Query 002236
Match_columns 949
No_of_seqs 577 out of 3541
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.3E-52 8E-57 469.2 29.3 228 623-854 21-254 (366)
2 2olj_A Amino acid ABC transpor 100.0 2.4E-51 8.1E-56 443.8 31.5 222 625-854 23-249 (263)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 7E-52 2.4E-56 464.9 28.2 221 626-854 4-229 (359)
4 1vpl_A ABC transporter, ATP-bi 100.0 1.7E-51 5.7E-56 443.4 30.0 225 624-856 13-238 (256)
5 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-51 4.2E-56 448.7 26.6 223 625-854 6-234 (275)
6 1b0u_A Histidine permease; ABC 100.0 3.6E-51 1.2E-55 442.1 29.8 221 626-854 6-243 (262)
7 3rlf_A Maltose/maltodextrin im 100.0 3.1E-51 1.1E-55 462.6 28.3 220 626-854 3-224 (381)
8 2pcj_A ABC transporter, lipopr 100.0 1.4E-50 4.7E-55 427.8 28.9 214 625-847 3-222 (224)
9 3tif_A Uncharacterized ABC tra 100.0 8E-51 2.7E-55 432.6 26.5 223 626-852 1-233 (235)
10 1z47_A CYSA, putative ABC-tran 100.0 1.5E-50 5.2E-55 453.9 28.9 222 624-854 12-236 (355)
11 2yyz_A Sugar ABC transporter, 100.0 1.9E-50 6.5E-55 454.0 27.4 220 626-854 3-224 (359)
12 2it1_A 362AA long hypothetical 100.0 3.5E-50 1.2E-54 452.3 29.4 220 626-854 3-224 (362)
13 1g6h_A High-affinity branched- 100.0 1.6E-50 5.6E-55 435.6 25.0 218 625-850 6-239 (257)
14 1ji0_A ABC transporter; ATP bi 100.0 4.9E-50 1.7E-54 427.7 28.4 220 625-853 5-228 (240)
15 1oxx_K GLCV, glucose, ABC tran 100.0 1.6E-50 5.3E-55 454.3 24.7 221 626-854 3-231 (353)
16 4g1u_C Hemin import ATP-bindin 100.0 7.4E-50 2.5E-54 432.8 29.1 218 625-852 10-236 (266)
17 1g29_1 MALK, maltose transport 100.0 5.2E-50 1.8E-54 452.8 29.1 221 626-854 3-230 (372)
18 1v43_A Sugar-binding transport 100.0 6.7E-50 2.3E-54 451.5 27.6 220 626-854 11-232 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 6.6E-50 2.3E-54 448.1 26.7 216 626-854 1-218 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 5.4E-50 1.8E-54 427.7 22.5 215 626-854 1-217 (240)
21 2yz2_A Putative ABC transporte 100.0 4.4E-49 1.5E-53 426.6 25.8 225 626-856 2-230 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 7.9E-49 2.7E-53 427.5 22.2 220 625-852 20-251 (279)
23 2zu0_C Probable ATP-dependent 100.0 9.2E-48 3.2E-52 416.5 26.8 224 624-854 18-255 (267)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 6.6E-48 2.3E-52 413.7 22.5 219 626-851 3-231 (250)
25 2ixe_A Antigen peptide transpo 100.0 1.9E-47 6.5E-52 415.0 26.3 221 625-854 15-246 (271)
26 2ff7_A Alpha-hemolysin translo 100.0 1.1E-47 3.6E-52 411.6 24.0 218 625-854 6-233 (247)
27 2nq2_C Hypothetical ABC transp 100.0 3E-47 1E-51 409.6 27.1 207 626-852 4-216 (253)
28 3nh6_A ATP-binding cassette SU 100.0 5.6E-47 1.9E-51 417.7 25.8 218 625-855 52-279 (306)
29 2qi9_C Vitamin B12 import ATP- 100.0 6.6E-47 2.3E-51 406.0 24.9 210 625-852 3-221 (249)
30 2pjz_A Hypothetical protein ST 100.0 5.9E-47 2E-51 409.4 22.8 214 626-854 1-216 (263)
31 1mv5_A LMRA, multidrug resista 100.0 2.3E-47 7.8E-52 407.8 18.2 215 626-854 1-227 (243)
32 1sgw_A Putative ABC transporte 100.0 6.6E-47 2.3E-51 397.3 16.7 202 624-842 8-210 (214)
33 2ghi_A Transport protein; mult 100.0 8.4E-46 2.9E-50 399.7 25.5 218 625-854 16-243 (260)
34 3gd7_A Fusion complex of cysti 100.0 6.8E-46 2.3E-50 421.2 19.0 214 625-854 18-243 (390)
35 2pze_A Cystic fibrosis transme 100.0 5.5E-45 1.9E-49 386.2 24.4 206 624-854 4-219 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.1E-44 3.6E-49 386.0 20.8 207 626-854 3-218 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 1.7E-43 5.7E-48 421.7 25.9 219 625-854 340-568 (582)
38 2yl4_A ATP-binding cassette SU 100.0 1.4E-43 4.9E-48 423.3 24.3 220 627-854 342-571 (595)
39 4a82_A Cystic fibrosis transme 100.0 1.4E-43 4.7E-48 422.2 23.8 219 625-855 338-566 (578)
40 3b60_A Lipid A export ATP-bind 100.0 1.7E-43 5.9E-48 421.6 24.5 220 625-855 340-569 (582)
41 3qf4_A ABC transporter, ATP-bi 100.0 3E-43 1E-47 419.9 25.1 218 625-854 340-567 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 2.3E-43 7.9E-48 421.8 21.0 218 625-855 353-580 (598)
43 2bbs_A Cystic fibrosis transme 100.0 4.9E-42 1.7E-46 375.9 20.6 199 625-853 39-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 8.5E-41 2.9E-45 430.2 20.4 226 625-859 1075-1310(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 4.1E-39 1.4E-43 413.6 25.7 220 625-855 386-615 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 1.2E-39 4.2E-44 418.5 20.8 223 625-856 1029-1261(1284)
47 4f4c_A Multidrug resistance pr 100.0 4.9E-39 1.7E-43 413.9 24.1 221 625-856 414-644 (1321)
48 3bk7_A ABC transporter ATP-bin 100.0 2E-38 7E-43 378.7 22.6 204 625-853 356-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 2.6E-38 8.8E-43 373.6 20.3 204 625-853 286-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 6.5E-38 2.2E-42 369.8 21.3 205 625-852 268-476 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 6E-37 2E-41 366.1 15.3 198 626-840 83-304 (607)
52 3j16_B RLI1P; ribosome recycli 100.0 2.1E-36 7.1E-41 361.1 18.5 202 630-854 350-560 (608)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 8.8E-37 3E-41 360.5 14.4 197 627-840 21-234 (538)
54 2iw3_A Elongation factor 3A; a 100.0 2.6E-36 8.7E-41 373.1 16.8 206 625-847 670-981 (986)
55 2iw3_A Elongation factor 3A; a 100.0 2.6E-35 8.9E-40 364.1 25.4 199 626-853 435-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 7.8E-36 2.7E-40 361.2 16.1 204 645-853 31-298 (670)
57 3j16_B RLI1P; ribosome recycli 100.0 9.8E-34 3.4E-38 338.1 16.7 196 631-841 82-298 (608)
58 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-33 7.2E-38 339.9 18.9 201 645-854 335-641 (670)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.8E-33 6.3E-38 331.9 15.1 192 631-841 4-214 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 1.5E-31 5.3E-36 327.7 17.3 211 625-854 501-828 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 2.7E-31 9.2E-36 326.2 18.3 211 625-854 628-943 (972)
62 3pih_A Uvrabc system protein A 100.0 1.6E-30 5.3E-35 321.2 21.8 202 645-854 597-903 (916)
63 2ygr_A Uvrabc system protein A 100.0 1.4E-30 4.9E-35 320.8 18.2 211 625-854 646-961 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.3E-32 4.6E-37 318.8 -9.3 196 625-852 117-337 (460)
65 4aby_A DNA repair protein RECN 100.0 3.1E-29 1.1E-33 285.4 18.3 197 646-845 49-380 (415)
66 3b85_A Phosphate starvation-in 99.9 4.1E-30 1.4E-34 268.6 -9.0 147 644-829 12-163 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.4E-26 1.8E-30 256.4 18.5 84 760-844 274-364 (365)
68 1e69_A Chromosome segregation 99.9 1.4E-25 4.9E-30 248.4 15.4 191 650-843 17-302 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 1.1E-28 3.8E-33 281.9 -12.3 174 645-840 36-254 (413)
70 1znw_A Guanylate kinase, GMP k 99.9 4.2E-29 1.4E-33 258.9 -16.5 176 644-838 8-202 (207)
71 4gp7_A Metallophosphoesterase; 99.9 2.3E-26 8E-31 231.9 3.3 146 650-829 1-164 (171)
72 1ye8_A Protein THEP1, hypothet 99.9 3.6E-26 1.2E-30 233.1 2.2 147 660-844 2-159 (178)
73 3b9q_A Chloroplast SRP recepto 99.9 3.5E-25 1.2E-29 243.8 -0.3 175 647-842 89-284 (302)
74 2dpy_A FLII, flagellum-specifi 99.9 3.5E-26 1.2E-30 263.6 -9.2 196 625-854 130-345 (438)
75 2v9p_A Replication protein E1; 99.9 1.6E-27 5.4E-32 262.4 -22.2 167 626-855 101-268 (305)
76 2obl_A ESCN; ATPase, hydrolase 99.9 1.3E-24 4.3E-29 243.7 -5.3 194 625-853 44-255 (347)
77 2og2_A Putative signal recogni 99.9 1.4E-23 4.6E-28 236.0 2.6 173 649-842 148-341 (359)
78 1z6g_A Guanylate kinase; struc 99.9 2.9E-26 9.8E-31 240.4 -19.9 177 645-835 10-205 (218)
79 3aez_A Pantothenate kinase; tr 99.9 3E-25 1E-29 245.4 -14.4 182 624-841 41-246 (312)
80 1tf7_A KAIC; homohexamer, hexa 99.9 5.1E-25 1.8E-29 259.4 -14.0 179 627-839 13-209 (525)
81 2o5v_A DNA replication and rep 99.9 2E-21 6.8E-26 218.6 15.3 86 760-851 259-354 (359)
82 3sop_A Neuronal-specific septi 99.9 5.2E-24 1.8E-28 230.9 -7.2 148 660-825 4-151 (270)
83 1cr0_A DNA primase/helicase; R 99.9 2.3E-22 7.8E-27 219.1 5.6 183 645-842 22-237 (296)
84 2o8b_B DNA mismatch repair pro 99.8 1.5E-22 5.2E-27 253.8 4.3 173 625-850 749-939 (1022)
85 2pt7_A CAG-ALFA; ATPase, prote 99.8 5.6E-23 1.9E-27 228.9 -1.8 132 647-842 160-292 (330)
86 2jeo_A Uridine-cytidine kinase 99.8 1.9E-22 6.5E-27 214.4 1.4 176 644-855 11-189 (245)
87 2ehv_A Hypothetical protein PH 99.8 1.8E-22 6.1E-27 212.3 -0.1 164 654-839 26-207 (251)
88 4ad8_A DNA repair protein RECN 99.8 8.9E-21 3E-25 223.0 13.4 80 761-841 392-474 (517)
89 3qkt_A DNA double-strand break 99.8 3.5E-20 1.2E-24 206.7 16.8 79 759-838 242-327 (339)
90 3pih_A Uvrabc system protein A 99.8 5.5E-21 1.9E-25 236.4 10.7 161 672-853 382-560 (916)
91 2r6f_A Excinuclease ABC subuni 99.8 5.2E-20 1.8E-24 226.7 12.0 150 682-853 432-600 (972)
92 1tf7_A KAIC; homohexamer, hexa 99.8 2.2E-20 7.5E-25 220.0 7.5 154 652-841 275-444 (525)
93 3thx_A DNA mismatch repair pro 99.8 8.3E-21 2.9E-25 235.6 1.5 168 626-851 631-811 (934)
94 2vf7_A UVRA2, excinuclease ABC 99.8 3.3E-19 1.1E-23 218.9 12.2 167 666-853 270-475 (842)
95 2eyu_A Twitching motility prot 99.8 4.1E-20 1.4E-24 199.4 0.6 132 646-839 15-147 (261)
96 2ygr_A Uvrabc system protein A 99.8 8.4E-19 2.9E-23 216.6 11.9 133 717-853 466-617 (993)
97 2qnr_A Septin-2, protein NEDD5 99.8 8.2E-21 2.8E-25 208.7 -6.3 164 630-826 2-169 (301)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.2E-18 7.4E-23 170.8 10.7 83 759-842 51-142 (148)
99 1ewq_A DNA mismatch repair pro 99.7 2.3E-19 8E-24 219.0 4.1 146 645-847 566-718 (765)
100 1w1w_A Structural maintenance 99.7 5.9E-18 2E-22 194.4 15.2 77 761-838 329-410 (430)
101 4a74_A DNA repair and recombin 99.7 6.3E-20 2.2E-24 190.4 -1.9 148 654-841 21-201 (231)
102 3thx_B DNA mismatch repair pro 99.7 2.5E-19 8.7E-24 221.8 2.0 154 644-844 659-816 (918)
103 3szr_A Interferon-induced GTP- 99.7 3.2E-20 1.1E-24 222.3 -7.8 190 626-851 10-235 (608)
104 3asz_A Uridine kinase; cytidin 99.7 1.1E-20 3.9E-25 194.9 -11.2 145 655-825 3-162 (211)
105 1s96_A Guanylate kinase, GMP k 99.7 1.1E-19 3.7E-24 191.2 -4.8 146 653-855 11-162 (219)
106 2w0m_A SSO2452; RECA, SSPF, un 99.7 7.4E-18 2.5E-22 174.4 9.1 169 645-841 9-193 (235)
107 1wb9_A DNA mismatch repair pro 99.7 1.8E-18 6.2E-23 212.3 3.1 154 645-847 595-752 (800)
108 2i3b_A HCR-ntpase, human cance 99.7 2.1E-20 7E-25 192.4 -12.1 158 658-845 1-168 (189)
109 2bdt_A BH3686; alpha-beta prot 99.7 1.4E-21 4.7E-26 198.6 -22.5 173 658-853 2-184 (189)
110 1rj9_A FTSY, signal recognitio 99.7 4.7E-19 1.6E-23 195.2 -4.3 150 657-825 101-259 (304)
111 1pui_A ENGB, probable GTP-bind 99.7 3.3E-19 1.1E-23 182.6 -6.0 179 626-816 3-202 (210)
112 1pzn_A RAD51, DNA repair and r 99.7 2.7E-18 9.2E-23 192.5 -2.7 163 646-847 118-309 (349)
113 2qag_C Septin-7; cell cycle, c 99.7 3.2E-18 1.1E-22 196.1 -3.2 165 625-825 10-178 (418)
114 1nlf_A Regulatory protein REPA 99.6 1.1E-16 3.8E-21 173.0 7.2 154 654-829 26-186 (279)
115 1lw7_A Transcriptional regulat 99.6 9.4E-21 3.2E-25 213.1 -26.9 176 648-853 158-355 (365)
116 3jvv_A Twitching mobility prot 99.6 4.1E-17 1.4E-21 183.4 1.7 135 645-840 103-246 (356)
117 1zp6_A Hypothetical protein AT 99.6 1.4E-18 4.9E-23 175.9 -13.7 152 654-822 5-159 (191)
118 1n0w_A DNA repair protein RAD5 99.6 4.4E-16 1.5E-20 162.9 3.7 146 654-841 20-210 (243)
119 3kta_B Chromosome segregation 99.6 1.1E-14 3.7E-19 147.9 13.0 84 758-842 57-146 (173)
120 2cvh_A DNA repair and recombin 99.6 1.1E-15 3.6E-20 157.6 5.5 154 645-841 6-186 (220)
121 2qm8_A GTPase/ATPase; G protei 99.6 1.9E-18 6.6E-23 192.8 -17.6 173 626-811 29-258 (337)
122 2ewv_A Twitching motility prot 99.6 3.5E-16 1.2E-20 176.9 0.4 130 647-838 127-257 (372)
123 1nij_A Hypothetical protein YJ 99.5 2.4E-18 8.3E-23 190.3 -17.8 160 659-832 5-197 (318)
124 2bbw_A Adenylate kinase 4, AK4 99.5 4.1E-17 1.4E-21 173.0 -8.5 142 657-812 26-197 (246)
125 1htw_A HI0065; nucleotide-bind 99.5 4.8E-17 1.7E-21 162.7 -8.6 89 630-730 11-99 (158)
126 2yhs_A FTSY, cell division pro 99.5 1.2E-16 4.1E-21 185.3 -8.2 158 648-827 283-451 (503)
127 2oap_1 GSPE-2, type II secreti 99.5 2.7E-17 9.2E-22 193.0 -13.9 174 644-832 246-458 (511)
128 2rcn_A Probable GTPase ENGC; Y 99.5 7.1E-15 2.4E-19 165.0 5.5 138 647-812 205-345 (358)
129 2qag_B Septin-6, protein NEDD5 99.5 7.2E-16 2.5E-20 176.4 -3.5 180 626-824 16-219 (427)
130 2gza_A Type IV secretion syste 99.5 2.6E-15 9E-20 169.0 0.5 137 648-841 165-303 (361)
131 3e70_C DPA, signal recognition 99.4 1.2E-14 4.2E-19 161.6 1.9 145 654-823 125-278 (328)
132 3auy_A DNA double-strand break 99.4 2.4E-13 8.3E-18 153.3 12.0 77 761-838 276-359 (371)
133 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.4E-16 4.8E-21 181.0 -14.7 167 654-847 16-207 (392)
134 2yv5_A YJEQ protein; hydrolase 99.4 2.7E-15 9.4E-20 164.8 -4.1 123 653-778 160-300 (302)
135 3ec2_A DNA replication protein 99.4 2.6E-14 8.9E-19 143.9 2.5 112 653-827 33-146 (180)
136 1sxj_E Activator 1 40 kDa subu 99.4 2.6E-13 9E-18 150.2 7.4 136 661-826 39-176 (354)
137 1in4_A RUVB, holliday junction 99.4 2.9E-16 1E-20 174.5 -16.9 175 627-833 19-211 (334)
138 2kjq_A DNAA-related protein; s 99.4 1.1E-13 3.9E-18 136.7 3.1 94 647-826 30-128 (149)
139 1sq5_A Pantothenate kinase; P- 99.3 4.8E-15 1.6E-19 163.2 -9.7 140 625-798 36-199 (308)
140 1p9r_A General secretion pathw 99.3 1.5E-15 5.2E-20 174.0 -14.9 148 627-789 144-315 (418)
141 2f1r_A Molybdopterin-guanine d 99.3 9.4E-15 3.2E-19 148.0 -9.2 108 659-786 3-124 (171)
142 1udx_A The GTP-binding protein 99.3 3E-13 1E-17 154.8 -0.7 165 648-834 147-319 (416)
143 1u0l_A Probable GTPase ENGC; p 99.3 7.9E-14 2.7E-18 153.0 -5.5 111 653-768 164-294 (301)
144 3lda_A DNA repair protein RAD5 99.3 9.8E-13 3.4E-17 150.0 3.1 147 653-841 173-364 (400)
145 1odf_A YGR205W, hypothetical 3 99.3 1.9E-13 6.4E-18 149.6 -3.0 125 657-799 30-168 (290)
146 1t9h_A YLOQ, probable GTPase E 99.2 2.3E-13 7.7E-18 150.0 -4.7 118 653-773 168-303 (307)
147 1lvg_A Guanylate kinase, GMP k 99.2 2E-15 6.9E-20 155.5 -21.1 152 656-838 2-172 (198)
148 2x8a_A Nuclear valosin-contain 99.2 8.5E-15 2.9E-19 158.7 -18.3 145 645-809 33-191 (274)
149 3tr0_A Guanylate kinase, GMP k 99.2 2.2E-12 7.4E-17 131.7 -0.3 126 652-792 1-127 (205)
150 2px0_A Flagellar biosynthesis 99.2 4.8E-11 1.6E-15 130.9 9.4 139 656-844 103-246 (296)
151 2dr3_A UPF0273 protein PH0284; 99.1 2.9E-12 1E-16 133.9 -1.8 173 645-840 9-197 (247)
152 3lnc_A Guanylate kinase, GMP k 99.1 5.4E-15 1.8E-19 155.1 -23.1 178 645-835 14-206 (231)
153 3c8u_A Fructokinase; YP_612366 99.1 4E-13 1.4E-17 138.9 -10.4 157 655-855 19-183 (208)
154 1ls1_A Signal recognition part 99.1 4.6E-10 1.6E-14 122.9 11.5 138 629-819 79-217 (295)
155 1vma_A Cell division protein F 99.0 1.1E-10 3.7E-15 128.7 5.6 112 650-810 96-210 (306)
156 3euj_A Chromosome partition pr 99.0 1.4E-10 4.9E-15 134.7 3.5 53 645-698 17-69 (483)
157 2zr9_A Protein RECA, recombina 98.8 3.4E-09 1.2E-13 118.8 8.1 144 654-847 57-237 (349)
158 2r6a_A DNAB helicase, replicat 98.8 1.6E-09 5.6E-14 125.2 5.5 175 645-842 190-401 (454)
159 2ius_A DNA translocase FTSK; n 98.8 1E-10 3.6E-15 136.8 -4.8 175 650-837 159-362 (512)
160 3k1j_A LON protease, ATP-depen 98.8 1.4E-10 4.7E-15 138.9 -5.9 156 645-810 47-227 (604)
161 1iy2_A ATP-dependent metallopr 98.8 7.8E-12 2.7E-16 134.8 -15.2 123 645-786 62-190 (278)
162 1qhl_A Protein (cell division 98.8 2.3E-10 7.9E-15 120.9 -4.3 74 626-713 9-91 (227)
163 1ixz_A ATP-dependent metallopr 98.8 8.5E-12 2.9E-16 132.3 -15.7 128 645-793 38-171 (254)
164 1oix_A RAS-related protein RAB 98.7 5.1E-10 1.7E-14 113.5 -2.2 134 660-810 31-188 (191)
165 1svm_A Large T antigen; AAA+ f 98.7 1.1E-10 3.7E-15 132.2 -11.1 138 645-794 156-312 (377)
166 2f9l_A RAB11B, member RAS onco 98.6 9.1E-10 3.1E-14 111.9 -6.2 35 774-810 130-164 (199)
167 4eun_A Thermoresistant glucoki 98.6 5E-09 1.7E-13 107.3 -1.5 74 647-724 18-91 (200)
168 1jjv_A Dephospho-COA kinase; P 98.5 1.2E-08 3.9E-13 104.6 -0.1 137 660-856 4-142 (206)
169 2qtf_A Protein HFLX, GTP-bindi 98.5 1.7E-08 5.8E-13 113.7 -0.6 136 660-810 181-350 (364)
170 3uie_A Adenylyl-sulfate kinase 98.4 1.2E-08 4.1E-13 104.5 -3.5 61 630-697 3-65 (200)
171 2xau_A PRE-mRNA-splicing facto 98.4 2.9E-07 1E-11 113.2 7.2 74 760-833 185-261 (773)
172 3cr8_A Sulfate adenylyltranfer 98.4 1.9E-08 6.5E-13 119.0 -3.4 92 653-752 364-468 (552)
173 1zu4_A FTSY; GTPase, signal re 98.3 1.5E-07 5.1E-12 104.3 2.3 71 648-718 95-176 (320)
174 2e87_A Hypothetical protein PH 98.3 4.6E-07 1.6E-11 101.4 6.1 127 658-828 167-296 (357)
175 4e22_A Cytidylate kinase; P-lo 98.3 9.5E-08 3.2E-12 101.8 0.0 59 656-714 25-96 (252)
176 3a00_A Guanylate kinase, GMP k 98.3 2E-07 6.9E-12 94.3 2.0 31 658-688 1-31 (186)
177 2j41_A Guanylate kinase; GMP, 98.3 2.8E-07 9.6E-12 93.6 3.0 35 653-687 1-35 (207)
178 3kta_A Chromosome segregation 98.2 4.1E-07 1.4E-11 91.0 3.4 136 647-809 14-167 (182)
179 3hr8_A Protein RECA; alpha and 98.2 1E-06 3.5E-11 98.9 7.0 71 654-726 57-128 (356)
180 2www_A Methylmalonic aciduria 98.2 1.4E-07 4.7E-12 105.6 -0.5 43 656-698 72-114 (349)
181 2dy1_A Elongation factor G; tr 98.2 4.6E-07 1.6E-11 109.7 2.7 133 652-827 3-139 (665)
182 2ce7_A Cell division protein F 98.2 1E-06 3.6E-11 102.5 5.6 115 646-828 39-168 (476)
183 2dhr_A FTSH; AAA+ protein, hex 98.2 2.9E-08 1E-12 116.1 -7.8 141 646-807 54-212 (499)
184 3nwj_A ATSK2; P loop, shikimat 98.1 2.1E-07 7E-12 99.7 -1.5 53 625-682 16-72 (250)
185 3t34_A Dynamin-related protein 98.1 4.4E-08 1.5E-12 109.7 -7.4 172 645-822 24-212 (360)
186 1fnn_A CDC6P, cell division co 98.1 2.4E-06 8.2E-11 94.9 5.2 127 657-831 41-176 (389)
187 1knq_A Gluconate kinase; ALFA/ 98.0 2.8E-07 9.5E-12 91.7 -2.6 39 656-698 6-44 (175)
188 3tqc_A Pantothenate kinase; bi 98.0 7.1E-08 2.4E-12 106.9 -8.0 139 630-798 64-211 (321)
189 3kl4_A SRP54, signal recogniti 98.0 1.6E-05 5.3E-10 91.5 10.1 125 657-824 96-224 (433)
190 1ega_A Protein (GTP-binding pr 97.9 6.6E-07 2.3E-11 97.9 -3.5 155 656-835 6-170 (301)
191 1sxj_C Activator 1 40 kDa subu 97.8 9.9E-08 3.4E-12 105.6 -11.5 51 645-695 31-83 (340)
192 2vp4_A Deoxynucleoside kinase; 97.8 6.6E-06 2.3E-10 86.1 2.7 39 654-696 16-54 (230)
193 1kgd_A CASK, peripheral plasma 97.8 6.2E-06 2.1E-10 83.0 2.2 36 656-691 3-39 (180)
194 1rz3_A Hypothetical protein rb 97.8 4.3E-06 1.5E-10 85.6 0.9 43 655-697 19-61 (201)
195 3vaa_A Shikimate kinase, SK; s 97.7 1.2E-05 4E-10 82.0 3.3 39 644-682 11-49 (199)
196 4a1f_A DNAB helicase, replicat 97.7 2.5E-05 8.5E-10 87.1 6.0 128 645-821 33-163 (338)
197 2qby_A CDC6 homolog 1, cell di 97.7 1.2E-05 4E-10 88.8 2.0 30 656-685 43-72 (386)
198 2ffh_A Protein (FFH); SRP54, s 97.7 0.00013 4.6E-09 83.6 10.8 59 630-698 80-138 (425)
199 1cke_A CK, MSSA, protein (cyti 97.6 3.7E-06 1.3E-10 86.8 -2.1 58 657-714 4-74 (227)
200 3tau_A Guanylate kinase, GMP k 97.6 2.5E-05 8.5E-10 80.4 3.6 29 656-684 6-34 (208)
201 2z43_A DNA repair and recombin 97.6 0.00013 4.4E-09 80.5 9.1 134 654-827 103-261 (324)
202 3ney_A 55 kDa erythrocyte memb 97.6 2.4E-05 8.2E-10 80.8 3.0 42 653-696 14-68 (197)
203 2p67_A LAO/AO transport system 97.6 7.5E-06 2.6E-10 91.1 -1.1 66 627-698 31-96 (341)
204 2z4s_A Chromosomal replication 97.5 1.1E-05 3.8E-10 92.9 -0.1 42 782-823 193-236 (440)
205 3lxx_A GTPase IMAP family memb 97.5 0.00055 1.9E-08 71.5 11.9 72 782-860 111-186 (239)
206 1v5w_A DMC1, meiotic recombina 97.5 0.00019 6.5E-09 79.9 8.7 135 654-828 118-278 (343)
207 2qt1_A Nicotinamide riboside k 97.5 6.5E-05 2.2E-09 76.7 4.2 32 652-683 15-46 (207)
208 3m6a_A ATP-dependent protease 97.4 2.1E-05 7E-10 93.1 -0.9 67 645-712 96-163 (543)
209 1j8m_F SRP54, signal recogniti 97.3 0.00083 2.8E-08 73.4 10.5 60 630-698 78-138 (297)
210 3b9p_A CG5977-PA, isoform A; A 97.3 0.00086 3E-08 72.0 10.4 59 767-825 97-170 (297)
211 1mky_A Probable GTP-binding pr 97.2 0.00018 6.1E-09 82.6 4.3 69 660-728 182-263 (439)
212 1kag_A SKI, shikimate kinase I 97.1 0.00014 4.9E-09 71.5 2.5 33 657-693 3-35 (173)
213 2pez_A Bifunctional 3'-phospho 97.1 9.5E-05 3.3E-09 73.7 0.9 40 656-696 3-44 (179)
214 3k53_A Ferrous iron transport 97.1 6.1E-05 2.1E-09 80.6 -1.2 46 792-837 144-191 (271)
215 3bh0_A DNAB-like replicative h 97.0 0.00025 8.6E-09 77.9 3.6 131 645-822 55-189 (315)
216 4fcw_A Chaperone protein CLPB; 97.0 0.00052 1.8E-08 74.0 6.0 31 659-689 48-78 (311)
217 1ypw_A Transitional endoplasmi 97.0 0.0003 1E-08 87.0 4.0 32 653-684 233-264 (806)
218 3cf0_A Transitional endoplasmi 97.0 0.0015 5.2E-08 70.9 9.1 31 653-683 44-74 (301)
219 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00037 1.3E-08 68.3 3.8 30 649-679 15-44 (149)
220 1u94_A RECA protein, recombina 96.9 0.0024 8.1E-08 71.6 9.8 36 646-681 49-86 (356)
221 1f6b_A SAR1; gtpases, N-termin 96.9 0.00024 8.1E-09 72.0 1.3 35 645-680 13-47 (198)
222 1sxj_D Activator 1 41 kDa subu 96.9 1.6E-05 5.6E-10 87.2 -7.9 52 782-834 132-184 (353)
223 4eaq_A DTMP kinase, thymidylat 96.8 0.00035 1.2E-08 73.3 2.4 46 647-693 12-60 (229)
224 1m2o_B GTP-binding protein SAR 96.8 0.00067 2.3E-08 68.0 4.3 34 646-680 12-45 (190)
225 1m7g_A Adenylylsulfate kinase; 96.8 0.00016 5.6E-09 74.2 -0.3 44 653-696 20-65 (211)
226 1njg_A DNA polymerase III subu 96.8 0.00079 2.7E-08 68.2 4.2 43 782-825 125-167 (250)
227 3ice_A Transcription terminati 96.7 0.00021 7.3E-09 80.7 -0.2 53 626-683 133-199 (422)
228 3llm_A ATP-dependent RNA helic 96.7 0.0018 6.1E-08 67.6 6.8 146 654-829 72-225 (235)
229 2gj8_A MNME, tRNA modification 96.7 0.001 3.6E-08 65.6 4.6 27 656-682 2-28 (172)
230 2qag_A Septin-2, protein NEDD5 96.6 0.00023 8E-09 79.8 -1.3 57 626-694 17-73 (361)
231 2w58_A DNAI, primosome compone 96.6 0.0026 8.8E-08 64.3 6.3 26 659-684 55-80 (202)
232 2wjg_A FEOB, ferrous iron tran 96.5 0.0016 5.6E-08 64.2 4.0 22 660-681 9-30 (188)
233 2yvu_A Probable adenylyl-sulfa 96.4 0.00078 2.7E-08 67.4 1.5 40 654-693 9-49 (186)
234 2wji_A Ferrous iron transport 96.4 0.0027 9.3E-08 61.9 5.4 25 660-684 5-29 (165)
235 3qks_A DNA double-strand break 96.4 0.0017 5.8E-08 66.7 3.8 29 650-679 16-44 (203)
236 1l8q_A Chromosomal replication 96.4 0.0034 1.2E-07 68.4 6.4 41 782-822 97-139 (324)
237 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0016 5.3E-08 74.1 3.7 41 654-694 18-69 (396)
238 2q6t_A DNAB replication FORK h 96.4 0.0021 7.3E-08 73.8 4.7 172 645-839 187-397 (444)
239 3bos_A Putative DNA replicatio 96.3 0.002 6.9E-08 65.9 3.9 27 657-683 51-77 (242)
240 3t61_A Gluconokinase; PSI-biol 96.3 0.00065 2.2E-08 68.9 0.2 35 658-696 18-52 (202)
241 2v1u_A Cell division control p 96.3 0.0035 1.2E-07 68.9 6.1 27 657-683 43-69 (387)
242 2if2_A Dephospho-COA kinase; a 96.1 0.0026 8.9E-08 64.3 3.3 21 660-680 3-23 (204)
243 3auy_A DNA double-strand break 96.0 0.0062 2.1E-07 68.3 6.1 32 647-679 15-46 (371)
244 1y63_A LMAJ004144AAA protein; 96.0 0.0031 1.1E-07 63.2 3.3 32 650-681 2-33 (184)
245 2qor_A Guanylate kinase; phosp 95.8 0.004 1.4E-07 63.4 3.1 29 655-683 9-37 (204)
246 3h4m_A Proteasome-activating n 95.8 0.015 5.3E-07 61.7 7.8 28 655-682 48-75 (285)
247 2zej_A Dardarin, leucine-rich 95.7 0.0047 1.6E-07 61.3 3.3 26 660-685 4-29 (184)
248 3dm5_A SRP54, signal recogniti 95.7 0.061 2.1E-06 61.9 12.9 34 657-690 99-132 (443)
249 2i1q_A DNA repair and recombin 95.7 0.0056 1.9E-07 66.9 4.0 27 654-680 94-120 (322)
250 2p5t_B PEZT; postsegregational 95.7 0.0029 1E-07 66.9 1.6 42 654-697 28-69 (253)
251 1np6_A Molybdopterin-guanine d 95.7 0.0038 1.3E-07 62.9 2.2 38 658-695 6-46 (174)
252 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0016 5.5E-08 72.9 -0.7 38 646-683 10-49 (359)
253 1q3t_A Cytidylate kinase; nucl 95.6 0.0029 1E-07 66.0 1.2 26 656-681 14-39 (236)
254 3cm0_A Adenylate kinase; ATP-b 95.6 0.0029 1E-07 62.8 1.1 25 656-680 2-26 (186)
255 1xp8_A RECA protein, recombina 95.5 0.069 2.4E-06 59.9 12.2 27 654-680 70-96 (366)
256 1ypw_A Transitional endoplasmi 95.4 0.0015 5.1E-08 80.8 -2.1 32 651-682 504-535 (806)
257 3n70_A Transport activator; si 95.4 0.03 1E-06 53.8 7.7 44 783-827 76-120 (145)
258 1lv7_A FTSH; alpha/beta domain 95.4 0.0059 2E-07 64.2 2.6 45 647-695 36-80 (257)
259 3zvl_A Bifunctional polynucleo 95.0 0.079 2.7E-06 60.3 10.8 26 656-681 256-281 (416)
260 4ag6_A VIRB4 ATPase, type IV s 95.0 0.0071 2.4E-07 68.0 2.0 47 782-828 261-311 (392)
261 1q57_A DNA primase/helicase; d 95.0 0.17 5.7E-06 58.8 13.7 35 646-680 230-264 (503)
262 2b8t_A Thymidine kinase; deoxy 95.0 0.026 8.9E-07 59.1 6.0 52 782-838 88-150 (223)
263 1jal_A YCHF protein; nucleotid 94.9 0.016 5.4E-07 65.1 4.5 36 658-693 2-48 (363)
264 3ihw_A Centg3; RAS, centaurin, 94.9 0.023 7.8E-07 56.5 5.2 28 660-687 22-54 (184)
265 1fzq_A ADP-ribosylation factor 94.8 0.014 4.8E-07 57.7 3.4 23 660-682 18-40 (181)
266 2r8r_A Sensor protein; KDPD, P 94.7 0.0013 4.5E-08 69.2 -4.7 47 781-827 82-135 (228)
267 3d8b_A Fidgetin-like protein 1 94.6 0.096 3.3E-06 58.2 9.7 26 657-682 116-141 (357)
268 2chg_A Replication factor C sm 94.5 0.11 3.9E-06 51.5 9.3 42 782-824 101-142 (226)
269 2qz4_A Paraplegin; AAA+, SPG7, 94.5 0.091 3.1E-06 54.7 8.8 26 657-682 38-63 (262)
270 3io5_A Recombination and repai 94.4 0.087 3E-06 58.2 8.7 27 655-682 26-53 (333)
271 3kb2_A SPBC2 prophage-derived 94.4 0.02 6.9E-07 55.6 3.2 23 660-682 3-25 (173)
272 3r20_A Cytidylate kinase; stru 94.4 0.0094 3.2E-07 62.9 0.8 25 657-681 8-32 (233)
273 3syl_A Protein CBBX; photosynt 94.3 0.18 6.2E-06 53.9 10.8 42 783-824 130-179 (309)
274 3cmw_A Protein RECA, recombina 94.2 0.068 2.3E-06 70.5 8.5 40 654-693 728-768 (1706)
275 1vht_A Dephospho-COA kinase; s 94.2 0.024 8.1E-07 58.0 3.4 24 657-680 3-26 (218)
276 4dcu_A GTP-binding protein ENG 94.0 0.035 1.2E-06 63.8 4.8 56 769-827 88-144 (456)
277 3lw7_A Adenylate kinase relate 94.0 0.028 9.5E-07 54.2 3.2 19 660-678 3-21 (179)
278 2rhm_A Putative kinase; P-loop 93.9 0.026 8.9E-07 56.0 3.1 26 656-681 3-28 (193)
279 1kht_A Adenylate kinase; phosp 93.9 0.03 1E-06 55.2 3.5 24 658-681 3-26 (192)
280 1qhx_A CPT, protein (chloramph 93.9 0.032 1.1E-06 54.7 3.6 26 658-683 3-28 (178)
281 1uf9_A TT1252 protein; P-loop, 93.9 0.027 9.1E-07 56.4 3.0 33 658-695 8-40 (203)
282 1gtv_A TMK, thymidylate kinase 93.8 0.0085 2.9E-07 60.7 -0.8 30 660-689 2-31 (214)
283 1gvn_B Zeta; postsegregational 93.8 0.03 1E-06 60.5 3.5 35 657-693 32-66 (287)
284 2v54_A DTMP kinase, thymidylat 93.4 0.042 1.4E-06 55.1 3.5 27 656-682 2-28 (204)
285 2jaq_A Deoxyguanosine kinase; 93.4 0.04 1.4E-06 55.0 3.3 23 660-682 2-24 (205)
286 2ze6_A Isopentenyl transferase 93.3 0.035 1.2E-06 58.8 2.9 24 659-682 2-25 (253)
287 3iij_A Coilin-interacting nucl 93.3 0.028 9.7E-07 55.5 2.0 25 656-680 9-33 (180)
288 2erx_A GTP-binding protein DI- 93.3 0.067 2.3E-06 51.1 4.6 22 660-681 5-26 (172)
289 2lkc_A Translation initiation 93.1 0.11 3.6E-06 50.3 5.9 26 657-682 7-32 (178)
290 1via_A Shikimate kinase; struc 93.1 0.04 1.4E-06 54.2 2.7 23 660-682 6-28 (175)
291 1jr3_A DNA polymerase III subu 93.1 0.072 2.5E-06 58.4 5.1 43 782-825 118-160 (373)
292 3b1v_A Ferrous iron uptake tra 93.1 0.046 1.6E-06 58.7 3.4 23 660-682 5-27 (272)
293 1ex7_A Guanylate kinase; subst 93.0 0.044 1.5E-06 55.7 3.0 22 661-682 4-25 (186)
294 1ly1_A Polynucleotide kinase; 93.0 0.049 1.7E-06 53.2 3.3 22 659-680 3-24 (181)
295 3trf_A Shikimate kinase, SK; a 93.0 0.052 1.8E-06 53.7 3.4 25 657-681 4-28 (185)
296 1qvr_A CLPB protein; coiled co 93.0 0.09 3.1E-06 65.3 6.3 35 659-693 589-624 (854)
297 1z0j_A RAB-22, RAS-related pro 92.9 0.06 2E-06 51.5 3.7 23 660-682 8-30 (170)
298 2plr_A DTMP kinase, probable t 92.9 0.055 1.9E-06 54.3 3.6 28 657-684 3-30 (213)
299 3bgw_A DNAB-like replicative h 92.9 0.13 4.4E-06 59.2 7.0 36 645-680 184-219 (444)
300 3co5_A Putative two-component 92.8 0.13 4.4E-06 49.3 5.9 38 784-822 76-114 (143)
301 2c95_A Adenylate kinase 1; tra 92.8 0.053 1.8E-06 53.9 3.2 26 656-681 7-32 (196)
302 3cbq_A GTP-binding protein REM 92.8 0.049 1.7E-06 54.7 2.9 22 660-681 25-46 (195)
303 1tev_A UMP-CMP kinase; ploop, 92.8 0.057 2E-06 53.3 3.4 23 658-680 3-25 (196)
304 2ged_A SR-beta, signal recogni 92.8 0.046 1.6E-06 54.0 2.7 24 660-683 50-73 (193)
305 1xjc_A MOBB protein homolog; s 92.8 0.034 1.2E-06 55.8 1.7 26 659-684 5-30 (169)
306 2wwf_A Thymidilate kinase, put 92.7 0.056 1.9E-06 54.4 3.3 26 656-681 8-33 (212)
307 3q72_A GTP-binding protein RAD 92.7 0.049 1.7E-06 52.0 2.7 24 660-683 4-27 (166)
308 2vhj_A Ntpase P4, P4; non- hyd 92.6 0.15 5.2E-06 56.3 6.8 28 653-680 118-145 (331)
309 2nzj_A GTP-binding protein REM 92.6 0.059 2E-06 51.9 3.1 23 660-682 6-28 (175)
310 3iby_A Ferrous iron transport 92.6 0.06 2E-06 57.2 3.4 23 660-682 3-25 (256)
311 1nn5_A Similar to deoxythymidy 92.6 0.061 2.1E-06 54.2 3.3 27 655-681 6-32 (215)
312 1xwi_A SKD1 protein; VPS4B, AA 92.4 0.63 2.2E-05 50.8 11.5 26 657-682 44-69 (322)
313 1d2n_A N-ethylmaleimide-sensit 92.4 0.28 9.6E-06 51.7 8.4 23 659-681 65-87 (272)
314 3tw8_B RAS-related protein RAB 92.4 0.064 2.2E-06 51.8 3.1 23 660-682 11-33 (181)
315 3ake_A Cytidylate kinase; CMP 92.4 0.059 2E-06 54.0 2.9 23 660-682 4-26 (208)
316 1ko7_A HPR kinase/phosphatase; 92.3 0.094 3.2E-06 57.7 4.6 35 645-680 132-166 (314)
317 3cmu_A Protein RECA, recombina 92.3 0.26 8.7E-06 66.0 9.5 49 646-694 369-420 (2050)
318 2dby_A GTP-binding protein; GD 92.3 0.054 1.9E-06 60.9 2.8 21 661-681 4-24 (368)
319 1moz_A ARL1, ADP-ribosylation 92.3 0.042 1.5E-06 53.5 1.7 22 659-680 19-40 (183)
320 2vli_A Antibiotic resistance p 92.3 0.051 1.8E-06 53.4 2.3 26 657-682 4-29 (183)
321 3q85_A GTP-binding protein REM 92.2 0.069 2.4E-06 51.2 3.1 23 661-683 5-27 (169)
322 1kao_A RAP2A; GTP-binding prot 92.2 0.063 2.1E-06 50.9 2.7 22 660-681 5-26 (167)
323 2ce2_X GTPase HRAS; signaling 92.2 0.056 1.9E-06 51.1 2.3 22 660-681 5-26 (166)
324 2dyk_A GTP-binding protein; GT 92.1 0.064 2.2E-06 50.8 2.7 23 660-682 3-25 (161)
325 1z2a_A RAS-related protein RAB 92.1 0.082 2.8E-06 50.4 3.4 23 660-682 7-29 (168)
326 1u8z_A RAS-related protein RAL 92.1 0.064 2.2E-06 50.9 2.6 22 660-681 6-27 (168)
327 3lxw_A GTPase IMAP family memb 92.0 0.071 2.4E-06 56.1 3.1 52 774-826 93-151 (247)
328 2z0h_A DTMP kinase, thymidylat 92.0 0.078 2.7E-06 52.7 3.2 23 660-682 2-24 (197)
329 1svi_A GTP-binding protein YSX 92.0 0.065 2.2E-06 52.8 2.6 22 660-681 25-46 (195)
330 3pqc_A Probable GTP-binding pr 91.9 0.067 2.3E-06 52.5 2.6 23 660-682 25-47 (195)
331 1z08_A RAS-related protein RAB 91.9 0.071 2.4E-06 51.0 2.7 23 660-682 8-30 (170)
332 1ky3_A GTP-binding protein YPT 91.8 0.072 2.5E-06 51.5 2.7 23 660-682 10-32 (182)
333 1nks_A Adenylate kinase; therm 91.8 0.079 2.7E-06 52.2 3.0 23 660-682 3-25 (194)
334 2ew1_A RAS-related protein RAB 91.8 0.12 4.2E-06 52.2 4.5 22 660-681 28-49 (201)
335 2fn4_A P23, RAS-related protei 91.8 0.067 2.3E-06 51.7 2.4 22 660-681 11-32 (181)
336 1c1y_A RAS-related protein RAP 91.7 0.097 3.3E-06 49.8 3.4 22 660-681 5-26 (167)
337 2cxx_A Probable GTP-binding pr 91.7 0.091 3.1E-06 51.3 3.3 22 661-682 4-25 (190)
338 1ek0_A Protein (GTP-binding pr 91.7 0.095 3.2E-06 49.9 3.3 22 661-682 6-27 (170)
339 1g16_A RAS-related protein SEC 91.7 0.069 2.4E-06 51.0 2.3 22 661-682 6-27 (170)
340 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.077 2.6E-06 51.3 2.7 23 660-682 9-31 (177)
341 2bwj_A Adenylate kinase 5; pho 91.7 0.058 2E-06 53.7 1.9 28 655-682 9-36 (199)
342 3cmw_A Protein RECA, recombina 91.7 0.69 2.3E-05 61.2 12.2 35 646-680 369-405 (1706)
343 3t1o_A Gliding protein MGLA; G 91.7 0.078 2.7E-06 52.0 2.8 25 660-684 16-40 (198)
344 1aky_A Adenylate kinase; ATP:A 91.6 0.1 3.4E-06 53.4 3.6 26 657-682 3-28 (220)
345 1m7b_A RND3/RHOE small GTP-bin 91.6 0.11 3.8E-06 51.0 3.8 22 660-681 9-30 (184)
346 4dsu_A GTPase KRAS, isoform 2B 91.5 0.081 2.8E-06 51.6 2.7 23 660-682 6-28 (189)
347 1r2q_A RAS-related protein RAB 91.5 0.081 2.8E-06 50.4 2.6 22 660-681 8-29 (170)
348 3clv_A RAB5 protein, putative; 91.4 0.084 2.9E-06 51.7 2.7 23 660-682 9-31 (208)
349 1zd8_A GTP:AMP phosphotransfer 91.4 0.097 3.3E-06 53.9 3.2 27 656-682 5-31 (227)
350 2oil_A CATX-8, RAS-related pro 91.4 0.084 2.9E-06 52.1 2.7 23 660-682 27-49 (193)
351 2hxs_A RAB-26, RAS-related pro 91.3 0.097 3.3E-06 50.6 3.0 23 660-682 8-30 (178)
352 3t5g_A GTP-binding protein RHE 91.3 0.14 4.9E-06 49.7 4.3 21 660-680 8-28 (181)
353 3u61_B DNA polymerase accessor 91.3 0.47 1.6E-05 51.2 8.8 43 782-825 104-147 (324)
354 3bc1_A RAS-related protein RAB 91.3 0.086 3E-06 51.4 2.6 22 660-681 13-34 (195)
355 1upt_A ARL1, ADP-ribosylation 91.3 0.089 3E-06 50.4 2.6 22 660-681 9-30 (171)
356 1r8s_A ADP-ribosylation factor 91.1 0.093 3.2E-06 50.0 2.6 20 661-680 3-22 (164)
357 2xtp_A GTPase IMAP family memb 91.1 0.093 3.2E-06 55.0 2.9 23 660-682 24-46 (260)
358 1zuh_A Shikimate kinase; alpha 91.1 0.12 4E-06 50.4 3.4 24 658-681 7-30 (168)
359 3fb4_A Adenylate kinase; psych 91.1 0.11 3.8E-06 52.7 3.2 21 660-680 2-22 (216)
360 1sky_E F1-ATPase, F1-ATP synth 91.0 0.048 1.6E-06 63.1 0.6 45 645-690 139-183 (473)
361 1a5t_A Delta prime, HOLB; zinc 91.0 0.32 1.1E-05 53.4 7.1 43 782-825 107-149 (334)
362 1z0f_A RAB14, member RAS oncog 91.0 0.096 3.3E-06 50.4 2.6 23 660-682 17-39 (179)
363 2pbr_A DTMP kinase, thymidylat 91.0 0.11 3.9E-06 51.1 3.2 23 660-682 2-24 (195)
364 2g6b_A RAS-related protein RAB 91.0 0.097 3.3E-06 50.7 2.6 23 660-682 12-34 (180)
365 3a4m_A L-seryl-tRNA(SEC) kinas 90.9 0.12 4.2E-06 54.6 3.6 26 656-681 2-27 (260)
366 1wf3_A GTP-binding protein; GT 90.9 0.11 3.8E-06 56.5 3.3 23 660-682 9-31 (301)
367 2a9k_A RAS-related protein RAL 90.9 0.1 3.4E-06 50.7 2.6 22 660-681 20-41 (187)
368 3a1s_A Iron(II) transport prot 90.9 0.11 3.8E-06 55.1 3.1 23 660-682 7-29 (258)
369 1ksh_A ARF-like protein 2; sma 90.9 0.12 3.9E-06 50.7 3.1 24 659-682 19-42 (186)
370 1w5s_A Origin recognition comp 90.8 0.38 1.3E-05 53.3 7.6 25 658-682 50-76 (412)
371 1ukz_A Uridylate kinase; trans 90.8 0.12 4.3E-06 51.8 3.4 25 657-681 14-38 (203)
372 3con_A GTPase NRAS; structural 90.8 0.1 3.5E-06 51.3 2.6 22 660-681 23-44 (190)
373 2y8e_A RAB-protein 6, GH09086P 90.8 0.096 3.3E-06 50.4 2.3 22 660-681 16-37 (179)
374 2cdn_A Adenylate kinase; phosp 90.8 0.14 4.7E-06 51.5 3.6 25 657-681 19-43 (201)
375 1vg8_A RAS-related protein RAB 90.7 0.11 3.6E-06 51.8 2.7 23 660-682 10-32 (207)
376 3t5d_A Septin-7; GTP-binding p 90.7 0.1 3.6E-06 55.5 2.8 23 660-682 10-32 (274)
377 1qf9_A UMP/CMP kinase, protein 90.7 0.12 4.2E-06 50.8 3.1 24 658-681 6-29 (194)
378 2bov_A RAla, RAS-related prote 90.6 0.11 3.7E-06 51.6 2.6 22 660-681 16-37 (206)
379 1nrj_B SR-beta, signal recogni 90.6 0.11 3.7E-06 52.5 2.6 23 660-682 14-36 (218)
380 3dl0_A Adenylate kinase; phosp 90.6 0.13 4.4E-06 52.3 3.2 22 660-681 2-23 (216)
381 1xx6_A Thymidine kinase; NESG, 90.6 0.3 1E-05 49.8 5.9 51 783-838 81-142 (191)
382 3cnl_A YLQF, putative uncharac 90.6 0.13 4.5E-06 54.8 3.4 30 659-688 100-129 (262)
383 1e6c_A Shikimate kinase; phosp 90.6 0.12 3.9E-06 50.4 2.7 23 659-681 3-25 (173)
384 2pt5_A Shikimate kinase, SK; a 90.6 0.14 4.8E-06 49.6 3.3 22 660-681 2-23 (168)
385 3te6_A Regulatory protein SIR3 90.5 0.54 1.8E-05 51.7 8.3 42 657-698 44-93 (318)
386 1sxj_B Activator 1 37 kDa subu 90.5 0.28 9.7E-06 52.3 6.0 43 782-825 106-148 (323)
387 2efe_B Small GTP-binding prote 90.5 0.12 3.9E-06 50.2 2.7 23 660-682 14-36 (181)
388 3i8s_A Ferrous iron transport 90.5 0.11 3.9E-06 55.4 2.9 23 660-682 5-27 (274)
389 1zak_A Adenylate kinase; ATP:A 90.5 0.11 3.9E-06 53.1 2.7 25 657-681 4-28 (222)
390 2bme_A RAB4A, RAS-related prot 90.5 0.11 3.6E-06 50.8 2.3 23 660-682 12-34 (186)
391 2gf0_A GTP-binding protein DI- 90.4 0.11 3.7E-06 51.3 2.4 22 660-681 10-31 (199)
392 1mh1_A RAC1; GTP-binding, GTPa 90.4 0.12 4.1E-06 50.2 2.6 22 660-681 7-28 (186)
393 2h57_A ADP-ribosylation factor 90.3 0.11 3.6E-06 51.3 2.3 23 660-682 23-45 (190)
394 3tkl_A RAS-related protein RAB 90.3 0.15 5.1E-06 50.1 3.3 23 660-682 18-40 (196)
395 2gf9_A RAS-related protein RAB 90.3 0.12 4.2E-06 50.9 2.6 23 660-682 24-46 (189)
396 2il1_A RAB12; G-protein, GDP, 90.3 0.13 4.6E-06 50.9 3.0 23 660-682 28-50 (192)
397 1zbd_A Rabphilin-3A; G protein 90.2 0.14 4.8E-06 51.0 3.1 23 660-682 10-32 (203)
398 3kkq_A RAS-related protein M-R 90.2 0.15 5.3E-06 49.6 3.3 22 660-681 20-41 (183)
399 2iyv_A Shikimate kinase, SK; t 90.1 0.13 4.3E-06 50.9 2.6 23 659-681 3-25 (184)
400 4bas_A ADP-ribosylation factor 90.1 0.15 5E-06 50.4 3.1 22 660-681 19-40 (199)
401 4dhe_A Probable GTP-binding pr 90.1 0.08 2.7E-06 53.6 1.2 23 660-682 31-53 (223)
402 2cjw_A GTP-binding protein GEM 90.0 0.13 4.5E-06 51.4 2.6 22 660-681 8-29 (192)
403 1gwn_A RHO-related GTP-binding 90.0 0.18 6.3E-06 50.9 3.8 23 660-682 30-52 (205)
404 3llu_A RAS-related GTP-binding 90.0 0.15 5.2E-06 50.7 3.1 25 660-684 22-46 (196)
405 2o52_A RAS-related protein RAB 89.9 0.14 4.8E-06 51.3 2.8 23 660-682 27-49 (200)
406 1zj6_A ADP-ribosylation factor 89.9 0.14 4.8E-06 50.3 2.8 22 660-681 18-39 (187)
407 3bwd_D RAC-like GTP-binding pr 89.9 0.14 4.7E-06 49.7 2.6 22 660-681 10-31 (182)
408 2wsm_A Hydrogenase expression/ 89.9 0.13 4.6E-06 52.0 2.6 23 660-682 32-54 (221)
409 2fg5_A RAB-22B, RAS-related pr 89.9 0.13 4.3E-06 51.0 2.4 23 660-682 25-47 (192)
410 2a5j_A RAS-related protein RAB 89.8 0.14 4.8E-06 50.6 2.7 23 660-682 23-45 (191)
411 1iqp_A RFCS; clamp loader, ext 89.8 0.17 5.9E-06 54.1 3.5 43 782-825 109-151 (327)
412 3oes_A GTPase rhebl1; small GT 89.8 0.13 4.4E-06 51.4 2.3 23 660-682 26-48 (201)
413 3c5c_A RAS-like protein 12; GD 89.7 0.22 7.6E-06 49.2 4.0 22 660-681 23-44 (187)
414 3reg_A RHO-like small GTPase; 89.7 0.14 4.9E-06 50.6 2.6 23 660-682 25-47 (194)
415 2xb4_A Adenylate kinase; ATP-b 89.7 0.17 5.8E-06 52.1 3.3 22 660-681 2-23 (223)
416 1z06_A RAS-related protein RAB 89.6 0.15 5.1E-06 50.2 2.7 22 660-681 22-43 (189)
417 2qu8_A Putative nucleolar GTP- 89.6 0.16 5.6E-06 51.9 3.1 23 660-682 31-53 (228)
418 3dz8_A RAS-related protein RAB 89.6 0.13 4.6E-06 50.7 2.3 23 660-682 25-47 (191)
419 3iev_A GTP-binding protein ERA 89.6 0.17 5.8E-06 55.1 3.3 23 660-682 12-34 (308)
420 3tlx_A Adenylate kinase 2; str 89.6 0.19 6.4E-06 52.7 3.5 24 657-680 28-51 (243)
421 3hu3_A Transitional endoplasmi 89.6 0.39 1.3E-05 55.9 6.5 25 658-682 238-262 (489)
422 2atv_A RERG, RAS-like estrogen 89.5 0.15 5.2E-06 50.6 2.7 22 660-681 30-51 (196)
423 2bcg_Y Protein YP2, GTP-bindin 89.5 0.14 4.7E-06 51.3 2.3 23 660-682 10-32 (206)
424 1zd9_A ADP-ribosylation factor 89.5 0.15 5.2E-06 50.3 2.6 22 660-681 24-45 (188)
425 1x3s_A RAS-related protein RAB 89.5 0.15 5.2E-06 50.0 2.6 23 660-682 17-39 (195)
426 2h17_A ADP-ribosylation factor 89.5 0.14 4.8E-06 50.1 2.3 23 660-682 23-45 (181)
427 2f7s_A C25KG, RAS-related prot 89.4 0.18 6.2E-06 50.8 3.2 24 660-683 27-50 (217)
428 2q3h_A RAS homolog gene family 89.4 0.18 6.2E-06 50.0 3.1 22 660-681 22-43 (201)
429 3def_A T7I23.11 protein; chlor 89.3 0.16 5.5E-06 53.6 2.9 23 660-682 38-60 (262)
430 2grj_A Dephospho-COA kinase; T 89.3 0.19 6.4E-06 51.1 3.2 24 658-681 12-35 (192)
431 2p5s_A RAS and EF-hand domain 89.3 0.16 5.4E-06 50.6 2.7 23 660-682 30-52 (199)
432 2iwr_A Centaurin gamma 1; ANK 89.3 0.12 4.2E-06 50.0 1.8 22 660-681 9-30 (178)
433 1jwy_B Dynamin A GTPase domain 89.3 0.16 5.4E-06 54.7 2.8 24 660-683 26-49 (315)
434 3v9p_A DTMP kinase, thymidylat 89.3 0.17 5.9E-06 52.9 3.0 28 656-683 23-50 (227)
435 2fh5_B SR-beta, signal recogni 89.3 0.2 7E-06 50.3 3.4 23 660-682 9-31 (214)
436 1uj2_A Uridine-cytidine kinase 89.3 0.19 6.3E-06 52.8 3.2 24 659-682 23-46 (252)
437 2j1l_A RHO-related GTP-binding 89.1 0.18 6.1E-06 51.1 2.9 22 660-681 36-57 (214)
438 3cph_A RAS-related protein SEC 89.1 0.17 5.8E-06 50.6 2.6 23 660-682 22-44 (213)
439 3vfd_A Spastin; ATPase, microt 89.0 0.87 3E-05 50.8 8.7 26 657-682 147-172 (389)
440 2fu5_C RAS-related protein RAB 88.9 0.13 4.5E-06 50.0 1.7 22 660-681 10-31 (183)
441 2orv_A Thymidine kinase; TP4A 88.9 0.6 2.1E-05 49.2 6.7 51 782-838 89-150 (234)
442 4edh_A DTMP kinase, thymidylat 88.8 0.23 7.9E-06 51.3 3.5 29 656-684 4-32 (213)
443 3euj_A Chromosome partition pr 88.8 0.43 1.5E-05 55.5 6.1 76 758-838 372-464 (483)
444 1a7j_A Phosphoribulokinase; tr 88.8 0.13 4.3E-06 55.8 1.5 26 657-682 4-29 (290)
445 2fv8_A H6, RHO-related GTP-bin 88.7 0.17 5.9E-06 50.8 2.4 23 660-682 27-49 (207)
446 2b6h_A ADP-ribosylation factor 88.6 0.19 6.7E-06 49.9 2.7 22 660-681 31-52 (192)
447 2f6r_A COA synthase, bifunctio 88.4 0.21 7.3E-06 53.6 3.0 23 658-680 75-97 (281)
448 1e4v_A Adenylate kinase; trans 88.3 0.22 7.6E-06 50.6 2.9 22 660-681 2-23 (214)
449 2v3c_C SRP54, signal recogniti 88.2 0.078 2.7E-06 60.8 -0.6 38 659-696 100-137 (432)
450 3be4_A Adenylate kinase; malar 88.1 0.24 8.1E-06 50.7 3.0 25 658-682 5-29 (217)
451 2aka_B Dynamin-1; fusion prote 88.1 0.2 6.9E-06 53.2 2.6 24 660-683 28-51 (299)
452 2atx_A Small GTP binding prote 88.1 0.2 6.9E-06 49.4 2.4 22 660-681 20-41 (194)
453 2gco_A H9, RHO-related GTP-bin 88.1 0.2 6.8E-06 50.1 2.3 23 660-682 27-49 (201)
454 1h65_A Chloroplast outer envel 88.0 0.22 7.5E-06 52.8 2.8 23 660-682 41-63 (270)
455 1jbk_A CLPB protein; beta barr 88.0 0.29 1E-05 47.2 3.5 25 658-682 43-67 (195)
456 2g3y_A GTP-binding protein GEM 88.0 0.25 8.6E-06 50.7 3.1 23 660-682 39-61 (211)
457 3lv8_A DTMP kinase, thymidylat 87.9 0.27 9.1E-06 51.8 3.3 27 657-683 26-52 (236)
458 4djt_A GTP-binding nuclear pro 87.8 0.13 4.4E-06 51.9 0.8 23 660-682 13-35 (218)
459 1ltq_A Polynucleotide kinase; 87.8 0.27 9.1E-06 52.6 3.3 32 659-693 3-34 (301)
460 1ak2_A Adenylate kinase isoenz 87.7 0.31 1.1E-05 50.3 3.7 26 657-682 15-40 (233)
461 4tmk_A Protein (thymidylate ki 87.6 0.29 9.9E-06 50.6 3.4 27 657-683 2-28 (213)
462 3cmu_A Protein RECA, recombina 87.6 0.49 1.7E-05 63.4 6.2 35 645-679 1066-1102(2050)
463 2yc2_C IFT27, small RAB-relate 87.5 0.13 4.3E-06 51.1 0.5 22 660-681 22-43 (208)
464 2h92_A Cytidylate kinase; ross 87.5 0.26 9E-06 50.0 2.9 25 658-682 3-27 (219)
465 2x77_A ADP-ribosylation factor 87.4 0.19 6.4E-06 49.4 1.7 21 660-680 24-44 (189)
466 3cpj_B GTP-binding protein YPT 87.2 0.26 9E-06 50.1 2.7 23 660-682 15-37 (223)
467 2hup_A RAS-related protein RAB 87.1 0.25 8.4E-06 49.6 2.4 23 660-682 31-53 (201)
468 3tmk_A Thymidylate kinase; pho 87.1 0.33 1.1E-05 50.5 3.3 33 656-689 3-35 (216)
469 2hf9_A Probable hydrogenase ni 87.0 0.26 9E-06 50.0 2.6 23 660-682 40-62 (226)
470 3umf_A Adenylate kinase; rossm 87.0 0.29 1E-05 50.9 2.9 25 656-680 27-51 (217)
471 2j9r_A Thymidine kinase; TK1, 86.4 1.2 4.1E-05 46.3 7.2 51 783-838 101-162 (214)
472 3pxi_A Negative regulator of g 86.4 1 3.5E-05 54.9 7.8 23 660-682 523-545 (758)
473 2j0v_A RAC-like GTP-binding pr 86.4 0.34 1.2E-05 48.5 3.0 22 660-681 11-32 (212)
474 3ld9_A DTMP kinase, thymidylat 86.3 0.4 1.4E-05 50.1 3.5 28 656-683 19-46 (223)
475 3tqf_A HPR(Ser) kinase; transf 86.3 0.57 1.9E-05 47.4 4.4 43 645-693 4-46 (181)
476 4gzl_A RAS-related C3 botulinu 86.3 0.24 8.2E-06 49.7 1.8 21 660-680 32-52 (204)
477 2ocp_A DGK, deoxyguanosine kin 86.2 0.37 1.3E-05 50.0 3.3 27 657-683 1-27 (241)
478 3q3j_B RHO-related GTP-binding 86.1 0.32 1.1E-05 49.4 2.6 22 660-681 29-50 (214)
479 3p32_A Probable GTPase RV1496/ 86.1 0.29 9.9E-06 54.3 2.5 34 658-691 79-112 (355)
480 3d3q_A TRNA delta(2)-isopenten 85.9 0.38 1.3E-05 53.5 3.2 25 659-683 8-32 (340)
481 1puj_A YLQF, conserved hypothe 85.6 0.49 1.7E-05 51.0 3.9 30 658-687 120-149 (282)
482 2p65_A Hypothetical protein PF 85.4 0.38 1.3E-05 46.5 2.6 26 658-683 43-68 (187)
483 1lnz_A SPO0B-associated GTP-bi 85.3 0.56 1.9E-05 52.0 4.3 33 649-681 149-181 (342)
484 1wxq_A GTP-binding protein; st 85.3 0.37 1.3E-05 54.6 2.9 42 742-789 180-221 (397)
485 3exa_A TRNA delta(2)-isopenten 85.2 0.47 1.6E-05 52.2 3.6 25 658-682 3-27 (322)
486 1p5z_B DCK, deoxycytidine kina 85.2 0.31 1.1E-05 51.3 2.0 27 656-682 22-48 (263)
487 2orw_A Thymidine kinase; TMTK, 85.1 0.48 1.6E-05 47.6 3.3 52 782-838 75-137 (184)
488 2gno_A DNA polymerase III, gam 85.1 0.55 1.9E-05 51.2 4.0 42 782-824 81-122 (305)
489 3a8t_A Adenylate isopentenyltr 84.9 0.49 1.7E-05 52.5 3.5 26 657-682 39-64 (339)
490 2qmh_A HPR kinase/phosphorylas 84.8 0.69 2.4E-05 47.8 4.3 35 646-681 23-57 (205)
491 2zts_A Putative uncharacterize 84.6 0.61 2.1E-05 47.7 3.9 60 779-838 131-206 (251)
492 3crm_A TRNA delta(2)-isopenten 84.5 0.49 1.7E-05 52.2 3.3 24 659-682 6-29 (323)
493 3th5_A RAS-related C3 botulinu 84.4 0.21 7E-06 49.9 0.0 21 660-680 32-52 (204)
494 3sr0_A Adenylate kinase; phosp 83.8 0.56 1.9E-05 48.2 3.2 22 660-681 2-23 (206)
495 2hjg_A GTP-binding protein ENG 83.7 0.47 1.6E-05 54.0 2.9 22 660-681 5-26 (436)
496 2r62_A Cell division protease 83.6 0.16 5.5E-06 53.2 -1.0 29 651-681 39-67 (268)
497 3gj0_A GTP-binding nuclear pro 83.3 0.34 1.2E-05 49.0 1.4 22 660-681 17-39 (221)
498 3sjy_A Translation initiation 83.2 0.59 2E-05 52.7 3.4 24 660-683 10-33 (403)
499 3l0i_B RAS-related protein RAB 83.1 0.16 5.3E-06 50.7 -1.3 23 660-682 35-57 (199)
500 1g5t_A COB(I)alamin adenosyltr 82.6 0.76 2.6E-05 47.1 3.6 70 771-840 106-180 (196)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.3e-52 Score=469.20 Aligned_cols=228 Identities=28% Similarity=0.437 Sum_probs=208.8
Q ss_pred CCCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc---
Q 002236 623 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--- 699 (949)
Q Consensus 623 ~~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--- 699 (949)
...+|+++||+|.|+++. ..+.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 21 ~~~mi~v~~ls~~y~~~~--~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp --CCEEEEEEEEEEECSS--SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCceEEEEeEEEEeCCCC--CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 345799999999997421 236799999999999999999999999999999999999999999999999999642
Q ss_pred -HHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 700 -MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 700 -~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
..+.|++|||+||++.+++.+||+||+.+..+.++.+.++.+++++++|+.+||. +.+++++.+|||||||||+|||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG--DKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG--GGTTCCTTTSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHH
Confidence 2345789999999999999999999999998888888888889999999999997 4889999999999999999999
Q ss_pred HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 779 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 779 ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||+.+|++|||||||+||||.+++.++++|++++ .|.|||++||+|+++..+||||++|++|++++.|+++++.+.
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999863 499999999999999999999999999999999999998654
No 2
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.4e-51 Score=443.80 Aligned_cols=222 Identities=24% Similarity=0.428 Sum_probs=203.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC---ccHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~---~~~~ 701 (949)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. ....
T Consensus 23 ~~l~i~~l~~~y~~------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 96 (263)
T 2olj_A 23 QMIDVHQLKKSFGS------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96 (263)
T ss_dssp CSEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHH
T ss_pred heEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHH
Confidence 36999999999963 57999999999999999999999999999999999999999999999999984 2334
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~-~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+.+++|||+||++.+++.+||+||+.+.. +.++.+.++.+++++++++.++|. +..++++.+|||||||||+||+||
T Consensus 97 ~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK--DKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCChhhCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999864 555665556677899999999996 478999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+.+|+++||||||+||||.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|++++.|+++++.+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999986 4699999999999999999999999999999999999998764
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7e-52 Score=464.87 Aligned_cols=221 Identities=25% Similarity=0.399 Sum_probs=204.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC---ccHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~---~~~~~ 702 (949)
+|+++||+|.|++ +.||+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .....
T Consensus 4 ~l~i~~ls~~y~~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccch
Confidence 6999999999973 67999999999999999999999999999999999999999999999999983 22234
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.+++|||+||+..+|+.+||+||+.|..+.++.+.++.+++++++++.++|. +++++++.+|||||||||+|||||+.
T Consensus 78 ~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS--ELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp GGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999987777777788889999999999997 58999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|++|||||||+|||+..|+.+++.|++. +.|.|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999988764 3599999999999999999999999999999999999998764
No 4
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-51 Score=443.40 Aligned_cols=225 Identities=30% Similarity=0.536 Sum_probs=207.0
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....+.
T Consensus 13 ~~~l~i~~l~~~y~~------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp -CCEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred CCeEEEEEEEEEECC------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHH
Confidence 357999999999963 57999999999999999999999999999999999999999999999999987655567
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.|||+||++.+++.+||+||+.++.+.++.+.++.+++++++++.++|. +..++++.+|||||||||+||+||+.+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG--EKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG--GGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc--hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 789999999999999999999999987776666555667899999999996 478999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
|+++||||||+||||.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|++++.|+++++.+.+.
T Consensus 165 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 238 (256)
T 1vpl_A 165 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238 (256)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhcc
Confidence 9999999999999999999999999986 469999999999999999999999999999999999999987653
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-51 Score=448.67 Aligned_cols=223 Identities=26% Similarity=0.416 Sum_probs=203.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc---cHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~---~~~ 701 (949)
.+|+++||+|.|++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ...
T Consensus 6 ~~l~i~~ls~~y~~-----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNYNYSD-----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp EEEEEEEEEEECTT-----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHH
T ss_pred cEEEEEEEEEEECC-----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHH
Confidence 47999999999974 2469999999999999999999999999999999999999999999999999842 234
Q ss_pred HhhccEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 702 RIYTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 702 ~~r~~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
+.|++|||+||++ ..+..+||+||+.+.....+.+.++.+++++++++.++|. ++.++++.+|||||||||+||+||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHHHHHHHHHHHH
Confidence 5678999999986 2333789999999988877877778888999999999996 588999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+.+|++|||||||+||||.+++.++++|++++ +|+|||++||++++++.+||||++|++|++++.|+++++.+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999864 499999999999999999999999999999999999998653
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-51 Score=442.07 Aligned_cols=221 Identities=24% Similarity=0.415 Sum_probs=201.5
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-------
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 698 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~------- 698 (949)
+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~~------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 79 (262)
T 1b0u_A 6 KLHVIDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79 (262)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred eEEEeeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccc
Confidence 6999999999963 579999999999999999999999999999999999999999999999999851
Q ss_pred ----c---HHHhhccEEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCc-ccccCCCCChh
Q 002236 699 ----D---MDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSGG 769 (949)
Q Consensus 699 ----~---~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~-~l~g~~~~~~~~~v~~~L~~l~L~~~~~-~~~~~~~LSGG 769 (949)
. ..+.++++||+||++.+++.+||+||+.+.. +.++.+.++.+++++++++.+||. +. .++++.+||||
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID--ERAQGKYPVHLSGG 157 (262)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC--HHHHTSCGGGSCHH
T ss_pred ccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhcCCcccCCHH
Confidence 1 1345678999999999999999999999864 555655556677899999999996 47 89999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 770 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 770 qKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|||||+|||||+.+|++|||||||+||||.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|++++.|++
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDP 237 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred HHHHHh
Q 002236 849 KELKAR 854 (949)
Q Consensus 849 ~~Lk~~ 854 (949)
+++.+.
T Consensus 238 ~~~~~~ 243 (262)
T 1b0u_A 238 EQVFGN 243 (262)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 998754
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.1e-51 Score=462.56 Aligned_cols=220 Identities=27% Similarity=0.451 Sum_probs=206.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ +.||+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... .++
T Consensus 3 ~l~~~~l~~~yg~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r 75 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AER 75 (381)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGS
T ss_pred EEEEEeEEEEECC------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHC
Confidence 5899999999973 679999999999999999999999999999999999999999999999999865332 357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
.|||+||++.||+.+||+||+.|..+.++.++++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred CEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999998888888888889999999999997 58999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||||+|||+..|+.+++.|+++ ++ |.|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999986 44 99999999999999999999999999999999999998654
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.4e-50 Score=427.76 Aligned_cols=214 Identities=22% Similarity=0.356 Sum_probs=194.8
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-H---
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M--- 700 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~--- 700 (949)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 3 ~~l~~~~l~~~y~~------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (224)
T 2pcj_A 3 EILRAENIKKVIRG------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76 (224)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHH
T ss_pred cEEEEEeEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 36999999999963 5799999999999999999999999999999999999999999999999998642 1
Q ss_pred HHhh-ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 701 DRIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 701 ~~~r-~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
.+.+ ++|||+||++.+++.+||+||+.+....++.+.++.+++++++++.++|. +..++++.+|||||||||+||+|
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG--DKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 2233 67999999999999999999999977766665556677899999999997 47899999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
|+.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++ .+|||+++|++|++++.|+
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999986 4699999999999998 7999999999999999886
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8e-51 Score=432.63 Aligned_cols=223 Identities=23% Similarity=0.411 Sum_probs=194.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HH---
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD--- 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~--- 701 (949)
+|+++||+|.|+++. ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ..
T Consensus 1 ~l~~~~l~~~y~~~~--~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCC--cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHH
Confidence 478999999997421 125699999999999999999999999999999999999999999999999998642 22
Q ss_pred Hh-hccEEEEcCCCCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 702 RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 702 ~~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~---g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
+. ++.|||+||++.+++.+||+||+.+....+ +.+.++..+++.++++.++|.+ ...++++.+||||||||++||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-RFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred HHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 22 356999999999999999999999876554 3455666788999999999963 235999999999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|||+.+|++|||||||+||||.+++.++++|+++ ++ |+|||++||+++.+ .+|||+++|++|+++..++++++.
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999986 34 99999999999965 789999999999999999887764
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.5e-50 Score=453.94 Aligned_cols=222 Identities=29% Similarity=0.491 Sum_probs=205.2
Q ss_pred CCcEEEEeEEEEc-CCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHH
Q 002236 624 SHAIISDNLRKIY-PGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 702 (949)
Q Consensus 624 ~~~I~v~nL~K~Y-~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~ 702 (949)
..+|+++||+|.| ++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 12 ~~~l~~~~l~~~y~g~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGG------ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL-PP 84 (355)
T ss_dssp CEEEEEEEEEECCTTS------TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC-CG
T ss_pred CceEEEEEEEEEEcCC------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC-Ch
Confidence 3579999999999 52 5699999999999999999999999999999999999999999999999998643 23
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
.+++|||+||+..+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||+.
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE--SYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999988777777777788999999999996 58999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|++|||||||+|||+.+|+.+++.|+++ ++ |+|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999986 33 89999999999999999999999999999999999998653
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-50 Score=453.99 Aligned_cols=220 Identities=29% Similarity=0.468 Sum_probs=202.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 75 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYR 75 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGT
T ss_pred EEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hhhC
Confidence 5899999999963 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+|||+||+..+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID--NLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999987766655555567899999999996 58999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||||+|||+..|+.+++.|+++ ++ |.|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999986 33 89999999999999999999999999999999999998654
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.5e-50 Score=452.31 Aligned_cols=220 Identities=27% Similarity=0.455 Sum_probs=203.8
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 75 (362)
T 2it1_A 3 EIKLENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-PKDR 75 (362)
T ss_dssp CEEEEEEEEESSS------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGT
T ss_pred EEEEEeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-HhHC
Confidence 5899999999963 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+|||+||+..+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID--KLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999987777777777788999999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++||||||+|||+..|+.+++.|+++ ++ |+|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998653
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.6e-50 Score=435.61 Aligned_cols=218 Identities=24% Similarity=0.413 Sum_probs=197.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc--HHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~--~~~ 702 (949)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 6 ~~l~i~~l~~~y~~------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 79 (257)
T 1g6h_A 6 EILRTENIVKYFGE------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79 (257)
T ss_dssp EEEEEEEEEEEETT------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred cEEEEeeeEEEECC------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 36999999999963 5799999999999999999999999999999999999999999999999998642 234
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhh--cC-----------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRL--KN-----------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l--~g-----------~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG 769 (949)
.++.|||+||++.+++.+||+||+.+.... .+ ...++.+++++++++.+||. +..++++.+||||
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG 157 (257)
T 1g6h_A 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS--HLYDRKAGELSGG 157 (257)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHH
T ss_pred HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc--hhhCCCchhCCHH
Confidence 567899999999999999999999986543 23 23445567899999999996 4789999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCH
Q 002236 770 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 848 (949)
Q Consensus 770 qKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~ 848 (949)
|||||+||+||+.+|++|||||||+||||.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|+++..|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred HH
Q 002236 849 KE 850 (949)
Q Consensus 849 ~~ 850 (949)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-50 Score=427.75 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=197.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHH-
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~- 702 (949)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..+
T Consensus 5 ~~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEeEEEEECC------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 36999999999963 5799999999999999999999999999999999999999999999999998642 222
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~-L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.++++||+||++.+++.+||+||+.+... .....++.++.++++++.++ |. +..++++.+|||||||||+|||||+
T Consensus 79 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLK--ERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHH--TTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred HhCCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHh--hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 35669999999999999999999998642 22334456678899999995 86 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.+|+++||||||+||||.+++.+++.|++.+ +|+|||++||++++++.+|||+++|++|++++.|+++++.+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999999999999864 69999999999999999999999999999999999998853
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.6e-50 Score=454.27 Aligned_cols=221 Identities=27% Similarity=0.506 Sum_probs=203.8
Q ss_pred cEEEEeEEEEcCCCCCCCccc--eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc----
Q 002236 626 AIISDNLRKIYPGRDGNPEKV--AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 699 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~--al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~---- 699 (949)
+|+++||+|.|++ +. +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 3 ~l~i~~l~~~y~~------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CEEEEEEEEEEGG------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc
Confidence 5899999999963 56 99999999999999999999999999999999999999999999999998541
Q ss_pred HHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 700 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 700 ~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
....+++|||+||+..+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+||||
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH--HVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHH
Confidence 2345688999999999999999999999987777777667778999999999996 58999999999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|+.+|++|||||||+|||+..|+.+++.|+++ ++ |+|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999986 33 89999999999999999999999999999999999998654
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.4e-50 Score=432.80 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=199.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.
T Consensus 10 ~~l~~~~l~~~~~~------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 83 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83 (266)
T ss_dssp CEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH
T ss_pred ceEEEEeEEEEeCC------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH
Confidence 47999999999973 679999999999999999999999999999999999999999999999999975 34556
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC-
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG- 782 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~- 782 (949)
++.+||+||++.+++.+||+||+.+....+ ..++.+++++++++.++|. +..++++.+|||||||||+|||||+.
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCL--ALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp HHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCS--TTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred hheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 778999999999988899999999876543 3445677899999999997 48899999999999999999999999
Q ss_pred -----CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 783 -----NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 783 -----~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
+|++|||||||+||||.+++.++++|+++ ++ |+|||++||++++++.+|||+++|++|++++.|+++++.
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999986 33 579999999999999999999999999999999999874
No 17
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.2e-50 Score=452.77 Aligned_cols=221 Identities=26% Similarity=0.444 Sum_probs=204.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-----H
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-----~ 700 (949)
+|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 5899999999963 5799999999999999999999999999999999999999999999999998541 2
Q ss_pred HHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
...+++|||+||+..+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||
T Consensus 77 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT--ELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG--GGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCCcccCCHHHHHHHHHHHHH
Confidence 233578999999999999999999999988877777777788999999999996 489999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 781 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+.+|++|||||||+|||+..|+.+++.|+++ ++ |.|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999986 33 89999999999999999999999999999999999998654
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.7e-50 Score=451.49 Aligned_cols=220 Identities=28% Similarity=0.443 Sum_probs=196.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 11 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 83 (372)
T 1v43_A 11 EVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDR 83 (372)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGG
T ss_pred eEEEEEEEEEECC------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hhhC
Confidence 5999999999963 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+|||+||+..+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE--ELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG--GGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999987766776677778899999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||||+|||+..|+.+++.|+++ ++ |.|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999986 34 89999999999999999999999999999999999998654
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.6e-50 Score=448.09 Aligned_cols=216 Identities=29% Similarity=0.512 Sum_probs=198.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ + +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...++
T Consensus 1 ml~~~~l~~~y~~------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~-~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL-SPEKH 72 (348)
T ss_dssp CEEEEEEEEECSS------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-CHHHH
T ss_pred CEEEEEEEEEECC------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-chhhC
Confidence 4789999999962 5 99999999999999999999999999999999999999999999999998642 23467
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+|||+||+..+|+.+||+||+.|..+.++.+.. ++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIE--HLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCT--TTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999998776665443 7889999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||||+|||+..|+.+++.|+++ + .|+|||++|||++|+..+|||+++|++|+++..|+++++.++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 3 499999999999999999999999999999999999998654
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-50 Score=427.74 Aligned_cols=215 Identities=22% Similarity=0.389 Sum_probs=194.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ +|+|+||+|++ |++||+||||||||||+|+|+|+++|++|+|.++|+++... ...++
T Consensus 1 ml~~~~l~~~y~~--------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN--------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERR 70 (240)
T ss_dssp CCEEEEEEEEETT--------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTS
T ss_pred CEEEEEEEEEeCC--------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhC
Confidence 3789999999962 59999999999 99999999999999999999999999999999999998642 23467
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
+|||+||++.+++.+||+||+.+..+.++. ...+++++++++.+||. +..++++.+||||||||++|||||+.+|+
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIA--HLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCT--TTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999986544332 22367789999999997 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++||||||+||||.+++.+++.|+++ ++ |+|||++||++++++.+|||+++|++|++++.|+++++.++
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 33 89999999999999999999999999999999999998764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.4e-49 Score=426.62 Aligned_cols=225 Identities=25% Similarity=0.383 Sum_probs=198.4
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|+..+ ...+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..++
T Consensus 2 ~l~~~~l~~~y~~~~-~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT-PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTS-TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHGG
T ss_pred EEEEEEEEEEecCCC-ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--Hhhh
Confidence 589999999996210 0015799999999999999999999999999999999999999999999999998643 5678
Q ss_pred cEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC--CCCcccccCCCCChhHHHHHHHHHHHcC
Q 002236 706 SMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIG 782 (949)
Q Consensus 706 ~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~--~~~~~~~~~~~LSGGqKqRLslA~ALi~ 782 (949)
+|||+||++ .++..+||+||+.++.... .+.++.+++++++++.+||. + ..++++.+|||||||||+||+||+.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDS--FKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHH--HTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcc--cccCChhhCCHHHHHHHHHHHHHHc
Confidence 899999995 5667799999999865433 33344467789999999995 4 6899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
+|+++||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|+++..|+++++.+...
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 230 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHSC
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCcc
Confidence 99999999999999999999999999986 469999999999999999999999999999999999999987644
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.9e-49 Score=427.53 Aligned_cols=220 Identities=24% Similarity=0.333 Sum_probs=193.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC--c-cHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--T-DMD 701 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~--~-~~~ 701 (949)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. . ...
T Consensus 20 ~~l~~~~l~~~y~~------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred ceEEEEeEEEEECC------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 47999999999963 57999999999999999999999999999999999999999999999999985 3 345
Q ss_pred HhhccEEEEcCCCCC--CCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 002236 702 RIYTSMGVCPQEDLL--WETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L--~~~lTv~E~L~~~~~----l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
+.+++|||+||++.+ ...+||+||+.+... +.+...++..++++++++.+||. +..++++.+|||||||||+
T Consensus 94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS--AKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHH
T ss_pred HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHH
Confidence 567889999998754 345799999987431 12223345567889999999996 4789999999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEE--EEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAI--ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tI--IltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|||||+.+|++|||||||+|||+.+++.++++|++++ +|+|| |++||++++++.+|||+++|++|+++..|+++++.
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999864 48999 99999999999999999999999999999998874
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=9.2e-48 Score=416.54 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=194.1
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCeecCcc-H
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-M 700 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl--~~ptsG~I~i~G~di~~~-~ 700 (949)
..+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+ .+|++|+|.++|.++... .
T Consensus 18 ~~~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp --CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CceEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 347999999999963 5799999999999999999999999999999999999 479999999999998642 2
Q ss_pred HH-hhccEEEEcCCCCCCCCCCHHHHHHHHhh-h---cC---CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHH
Q 002236 701 DR-IYTSMGVCPQEDLLWETLTGREHLLFYGR-L---KN---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMK 771 (949)
Q Consensus 701 ~~-~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l---~g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~-~LSGGqK 771 (949)
.. .++.+||+||++.+++.+|++|++.+... + .+ .+.++.+++++++++.+||.+ ...++++. +||||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT-TTTTSBTTTTCCHHHH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh-hHhcCCcccCCCHHHH
Confidence 22 24569999999999999999999987531 1 12 233445678899999999952 36788887 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHh-cCEEEEEeCCEEEEEcCHH
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPK 849 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l-~drI~Im~~G~l~~~Gs~~ 849 (949)
|||+|||||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||++++++.+ |||+++|++|+++..|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999874 589999999999999887 9999999999999999998
Q ss_pred HHHHh
Q 002236 850 ELKAR 854 (949)
Q Consensus 850 ~Lk~~ 854 (949)
++...
T Consensus 251 ~~~~~ 255 (267)
T 2zu0_C 251 LVKQL 255 (267)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87543
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.6e-48 Score=413.69 Aligned_cols=219 Identities=21% Similarity=0.290 Sum_probs=188.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCeecCcc-HH-
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD- 701 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl--~~ptsG~I~i~G~di~~~-~~- 701 (949)
+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++... ..
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~ 76 (250)
T 2d2e_A 3 QLEIRDLWASIDG------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76 (250)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHH
T ss_pred eEEEEeEEEEECC------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHH
Confidence 6899999999963 5799999999999999999999999999999999999 899999999999998642 22
Q ss_pred HhhccEEEEcCCCCCCCCCCHHHHHHHHhh-hcCC--CchhHHHHHHHHHHHcCCCCCCcccccCCC-CChhHHHHHHHH
Q 002236 702 RIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGK-YSGGMKRRLSVA 777 (949)
Q Consensus 702 ~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-l~g~--~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~-LSGGqKqRLslA 777 (949)
..++.+||+||++.+++.+|++||+.+... ..+. ...+..++++++++.+||.. +..++++++ |||||||||+||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE-SYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCG-GGGGSBTTCC----HHHHHHHH
T ss_pred HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCCh-hHhcCCcccCCCHHHHHHHHHH
Confidence 234569999999999999999999988653 2232 23345677899999999942 478999999 999999999999
Q ss_pred HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHh-cCEEEEEeCCEEEEEcCHHHH
Q 002236 778 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 778 ~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l-~drI~Im~~G~l~~~Gs~~~L 851 (949)
|||+.+|+++||||||+|||+.+++.++++|++.+ +|+|||++||++++++.+ |||+++|++|++++.|+++..
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELA 231 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHH
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999999999999999874 589999999999999998 599999999999999998743
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.9e-47 Score=414.99 Aligned_cols=221 Identities=20% Similarity=0.372 Sum_probs=191.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+|+++||+|.|++. .++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+
T Consensus 15 ~~l~~~~l~~~y~~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH---PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCEEEEEEEECCTTC---TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred ceEEEEEEEEEeCCC---CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH
Confidence 469999999999741 12569999999999999999999999999999999999999999999999999864 34456
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhH-----HHHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PAL-----TQAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~-~~~-----~~~v~~~L~~l--~L~~~~~~~~~~~~LSGGqKqRLs 775 (949)
+++|||+||++.+++ .||+||+.++.... .. .+. ...++++++.+ |+. ...++++.+|||||||||+
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgGq~QRv~ 166 (271)
T 2ixe_A 92 HTQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYD--TEVGETGNQLSGGQRQAVA 166 (271)
T ss_dssp HHHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGG--SBCCGGGTTSCHHHHHHHH
T ss_pred hccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchh--hhhcCCcCCCCHHHHHHHH
Confidence 788999999999987 59999998854221 22 211 12356678888 675 4688999999999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|||||+.+|++|||||||+|||+.+++.++++|++.. +|+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 38999999999999975 99999999999999999999976
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
.
T Consensus 246 ~ 246 (271)
T 2ixe_A 246 R 246 (271)
T ss_dssp H
T ss_pred C
Confidence 5
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.1e-47 Score=411.56 Aligned_cols=218 Identities=23% Similarity=0.435 Sum_probs=188.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
+.|+++||+|.|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+
T Consensus 6 ~~~~~~~l~~~y~~~----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEEESSTT----SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CceeEEEEEEEeCCC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 469999999999321 2579999999999999999999999999999999999999999999999999864 34556
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
+++|||+||++.+++ .|++||+.+... ... +++++++++.+++.+ +...++++.+|||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv 154 (247)
T 2ff7_A 82 RRQVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 154 (247)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH
T ss_pred HhcEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH
Confidence 788999999999987 599999987521 111 345666777777641 0234456789999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999987779999999999999975 999999999999999999998754
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3e-47 Score=409.55 Aligned_cols=207 Identities=23% Similarity=0.368 Sum_probs=186.9
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|. .++
T Consensus 4 ~l~i~~l~~~y~~-----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------------~~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------------VYQ 66 (253)
T ss_dssp EEEEEEEEEEETT-----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------------ECS
T ss_pred eEEEeeEEEEeCC-----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------------Eec
Confidence 6999999999962 24699999999999999999999999999999999999999999998 246
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhc-C---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLK-N---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 781 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~-g---~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi 781 (949)
.+||+||++.+++.+||+||+.+..... + ......+++++++++.+||. +..++++.+|||||||||+|||||+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~ 144 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT--HLAKREFTSLSGGQRQLILIARAIA 144 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh--HHhcCChhhCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999864322 2 12344567889999999996 4789999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
.+|+++||||||+|||+.+++.+++.|++. ++ |+|||++||++++++.+|||+++|++|+ ++.|+++++.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999986 44 8999999999999999999999999999 9999998874
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.6e-47 Score=417.68 Aligned_cols=218 Identities=21% Similarity=0.403 Sum_probs=190.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++||++.|++ .+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+
T Consensus 52 ~~i~~~~vs~~y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 52 GRIEFENVHFSYAD-----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CCEEEEEEEEESST-----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHH
T ss_pred CeEEEEEEEEEcCC-----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHH
Confidence 36999999999963 3579999999999999999999999999999999999999999999999999975 55678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++|||+||++.+|+ .||+||+.+..... . .++++++++.+++.+ +...++...+|||||||||
T Consensus 127 r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 127 RSHIGVVPQDTVLFN-DTIADNIRYGRVTA--G----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp HHTEEEECSSCCCCS-EEHHHHHHTTSTTC--C----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred hcceEEEecCCccCc-ccHHHHHHhhcccC--C----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 899999999999996 49999998753221 1 233445555554421 1245667789999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+||||||||+|||+.+++.+++.|++..+++|+|++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999998788999999999999987 999999999999999999999876
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
.
T Consensus 279 ~ 279 (306)
T 3nh6_A 279 G 279 (306)
T ss_dssp T
T ss_pred C
Confidence 4
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.6e-47 Score=405.97 Aligned_cols=210 Identities=20% Similarity=0.304 Sum_probs=190.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+++++||+|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.. ...+.
T Consensus 3 ~~l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 3 IVMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHH
T ss_pred cEEEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHH
Confidence 36899999985 3899999999999999999999999999999999999999 999999999854 34556
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++++||+||++.+++.+||+||+.+.. ..+. . +++++++++.++|. ++.++++.+||||||||++||+||+.+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~~---~-~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFATPVWHYLTLHQ-HDKT---R-TELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHEEEECSCCCCCTTCBHHHHHHTTC-SSTT---C-HHHHHHHHHHTTCG--GGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred hceEEEECCCCccCCCCcHHHHHHHhh-ccCC---c-HHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 788999999999999999999998752 2221 1 56789999999996 478999999999999999999999999
Q ss_pred Cc-------EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 784 PK-------VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 784 P~-------vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
|+ ++||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|++++.|+++++.
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99 99999999999999999999999986 46999999999999999999999999999999999998874
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.9e-47 Score=409.44 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=191.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++.. ..+.+|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. ++
T Consensus 1 ml~~~~l~~~y~~~~--~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~ 74 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG--YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YI 74 (263)
T ss_dssp CEEEEEEEEEEEEET--TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CT
T ss_pred CEEEEEEEEEeCCCC--ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hh
Confidence 478999999996310 01579999999999 9999999999999999999999999 9999999999998644 33 67
Q ss_pred cEE-EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 706 SMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 706 ~iG-~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
++| |+||++.+ .+|++||+.++..+++ ..+++++++++.++|.. +..++++.+||||||||++|||||+.+|
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~----~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKG----LDRDLFLEMLKALKLGE-EILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTC----CCHHHHHHHHHHTTCCG-GGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcc----hHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 899 99999887 7899999999765542 12467889999999961 3789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcC-EEEEEeCCEEEEEcCHHHHHHh
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCD-RLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~d-rI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+++||||||+|||+.+++.+++.|++.++ |||++||++++++.+|| |+++|++|++++.|+++++.+.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999998765 99999999999999999 9999999999999999999754
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-47 Score=407.77 Aligned_cols=215 Identities=20% Similarity=0.351 Sum_probs=187.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhh
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 704 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r 704 (949)
+|+++||+|.|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....|
T Consensus 1 ml~~~~l~~~y~~-----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (243)
T ss_dssp CEEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEEeCC-----CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 4789999999942 2569999999999999999999999999999999999999999999999999864 233467
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcc-----------cccCCCCChhHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA-----------DKQAGKYSGGMKRR 773 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~-----------~~~~~~LSGGqKqR 773 (949)
++|||+||++.+++ .|++||+.++.. .+. .+++++++++.+++.+ .. ++++.+||||||||
T Consensus 76 ~~i~~v~q~~~l~~-~tv~enl~~~~~-~~~----~~~~~~~~l~~~~l~~--~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 76 SQIGFVSQDSAIMA-GTIRENLTYGLE-GDY----TDEDLWQVLDLAFARS--FVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTCCEECCSSCCCC-EEHHHHTTSCTT-SCS----CHHHHHHHHHHHTCTT--TTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred hhEEEEcCCCcccc-ccHHHHHhhhcc-CCC----CHHHHHHHHHHhChHH--HHHhCccchhchhccCcCcCCHHHHHH
Confidence 78999999999988 499999987422 111 1345778888888863 33 34568999999999
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|+|||||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++ .|||+++|++|++++.|+++++.+
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998767999999999999987 599999999999999999999875
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
.
T Consensus 227 ~ 227 (243)
T 1mv5_A 227 T 227 (243)
T ss_dssp H
T ss_pred c
Confidence 4
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.6e-47 Score=397.32 Aligned_cols=202 Identities=18% Similarity=0.332 Sum_probs=180.9
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+|+++||+|.|+ + .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..
T Consensus 8 ~~~l~~~~ls~~y~------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~ 76 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KV 76 (214)
T ss_dssp -CEEEEEEEEEESS------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GG
T ss_pred CceEEEEEEEEEeC------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hh
Confidence 35799999999995 3 6999999999999999999999999999999999999999999999999886 25
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.+||+||++.+++.+|++||+.++...++. ..+ +++++++++.++|.+ . ++++.+|||||||||+||+||+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~--~-~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLD--L-KKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCC--T-TSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCc--C-CCChhhCCHHHHHHHHHHHHHHhC
Confidence 78899999999999999999999987666554 233 577899999999973 6 999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
|+++||||||+||||.+++.+++.|++.+ +|+|||++||++++++.+|||++.+ +|+|
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999864 5899999999999999999998644 4544
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.4e-46 Score=399.73 Aligned_cols=218 Identities=22% Similarity=0.438 Sum_probs=187.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
.+|+++||+|.|+++. .+.+|+|+||+|++||++||+||||||||||+|+|+|+++| +|+|.++|+++.. ....+
T Consensus 16 ~~l~i~~l~~~y~~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT---NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CCEEEEEEEECCTTCC---SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHH
T ss_pred CeEEEEEEEEEeCCCC---cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHH
Confidence 3699999999997421 24699999999999999999999999999999999999987 8999999999864 34567
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
+++|||+||++.+++ .|++||+.+.. . ... ++++.++++.+++.+ +...++++.+|||||||||
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~-~-~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 92 RSIIGIVPQDTILFN-ETIKYNILYGK-L-DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp HTTEEEECSSCCCCS-EEHHHHHHTTC-T-TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred hccEEEEcCCCcccc-cCHHHHHhccC-C-CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 789999999999986 59999998742 1 111 345667777777631 0113467889999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++. |||+++|++|+++..|+++++.+.
T Consensus 165 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS-AESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999998779999999999999864 999999999999999999998764
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-46 Score=421.21 Aligned_cols=214 Identities=23% Similarity=0.385 Sum_probs=191.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++||+|.|++. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.. ...+.
T Consensus 18 ~~i~~~~l~~~y~~~----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG----GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp CCEEEEEEEEESSSS----SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CeEEEEEEEEEecCC----CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 469999999999531 3679999999999999999999999999999999999998 99999999999975 44567
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC-----------CChhHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKR 772 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~-----------LSGGqKq 772 (949)
|+.|||+||++.+|+ +||+||+.++.. ..++++.++++.++|. ++.++++.+ |||||||
T Consensus 93 rr~ig~v~Q~~~lf~-~tv~enl~~~~~-------~~~~~v~~~l~~~~L~--~~~~~~p~~l~~~i~~~g~~LSGGqrQ 162 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFS-GTFRKNLDPNAA-------HSDQEIWKVADEVGLR--SVIEQFPGKLDFVLVDGGCVLSHGHKQ 162 (390)
T ss_dssp HHTEEEESCCCCCCS-EEHHHHHCTTCC-------SCHHHHHHHHHHTTCH--HHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred hCCEEEEcCCcccCc-cCHHHHhhhccc-------cCHHHHHHHHHHhCCH--HHHhhcccccccccccccccCCHHHHH
Confidence 889999999999998 699999974321 1246788999999996 478888888 9999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHH
Q 002236 773 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 852 (949)
Q Consensus 773 RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk 852 (949)
||+|||||+.+|++|||||||+|||+..++.+++.|++.++++|||++||+++.+ ..||||++|++|+++..|+++++.
T Consensus 163 RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877789999999998765 569999999999999999999997
Q ss_pred Hh
Q 002236 853 AR 854 (949)
Q Consensus 853 ~~ 854 (949)
++
T Consensus 242 ~~ 243 (390)
T 3gd7_A 242 HY 243 (390)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.5e-45 Score=386.19 Aligned_cols=206 Identities=20% Similarity=0.345 Sum_probs=173.8
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHh
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
..+|+++|++|.|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 4 ~~~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------- 69 (229)
T 2pze_A 4 TTEVVMENVTAFWEEG----GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69 (229)
T ss_dssp CEEEEEEEEEECSSTT----SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----------
T ss_pred cceEEEEEEEEEeCCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----------
Confidence 3479999999999631 35799999999999999999999999999999999999999999999998
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
+|||+||++.+++. |++||+.++... .. ....+.++.+++.+ ....++++.+|||||||||
T Consensus 70 --~i~~v~q~~~~~~~-tv~enl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv 139 (229)
T 2pze_A 70 --RISFCSQFSWIMPG-TIKENIIFGVSY---DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 139 (229)
T ss_dssp --CEEEECSSCCCCSB-CHHHHHHTTSCC---CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHH
T ss_pred --EEEEEecCCcccCC-CHHHHhhccCCc---Ch----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 39999999999886 999999874321 11 12233444444321 0123456789999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L-~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
+|||||+.+|+++||||||+|||+.+++.+++.+ ++.++|+|||++||++++++. |||+++|++|+++..|+++++.+
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH-CSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999974 555568999999999999875 99999999999999999999875
Q ss_pred h
Q 002236 854 R 854 (949)
Q Consensus 854 ~ 854 (949)
+
T Consensus 219 ~ 219 (229)
T 2pze_A 219 L 219 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=385.97 Aligned_cols=207 Identities=24% Similarity=0.419 Sum_probs=174.0
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
+|+++||+|.|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------ 66 (237)
T 2cbz_A 3 SITVRNATFTWARS----DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------ 66 (237)
T ss_dssp CEEEEEEEEESCTT----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------
T ss_pred eEEEEEEEEEeCCC----CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------
Confidence 58999999999631 25799999999999999999999999999999999999999999999998
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHH---HHHHcCCCCC---CcccccCCCCChhHHHHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE---SLKSVNLFHG---GVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~---~L~~l~L~~~---~~~~~~~~~LSGGqKqRLslA~A 779 (949)
++||+||++.+ +.+|++||+.++... ..+. .+++.+ +++.+++.+. ...++++.+||||||||++||||
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 39999999875 578999999875432 1111 122222 2233333210 13578899999999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHH---HhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVK---RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~---~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
|+.+|+++||||||+||||.+++.+++.|. +.++|+|||++||++++++ .|||+++|++|++++.|+++++.+.
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 999999999999999999999999999995 3456899999999999986 6999999999999999999998764
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.7e-43 Score=421.75 Aligned_cols=219 Identities=19% Similarity=0.405 Sum_probs=191.8
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|+++ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +....
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHH
Confidence 469999999999741 2569999999999999999999999999999999999999999999999999865 45667
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|+++||+||++.+|+. |++||+.+... .+ ..+++++++++.+++.+ +...+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~----~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 416 RRHFALVSQNVHLFND-TIANNIAYAAE-GE----YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred hcCeEEEcCCCccccc-cHHHHHhccCC-CC----CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 8899999999999985 99999987531 11 12456777888887742 0123445689999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|++++|||||+|||+.+++.+++.|++.++|+|+|++||++++++ .||||++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999877999999999999997 6999999999999999999999765
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-43 Score=423.35 Aligned_cols=220 Identities=25% Similarity=0.472 Sum_probs=188.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 705 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~ 705 (949)
|+++|+++.|+++ +++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|+
T Consensus 342 i~~~~v~~~y~~~---~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPAR---PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEEECSSC---TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEeCCC---CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 9999999999742 12569999999999999999999999999999999999999999999999999975 4566788
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 002236 706 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 776 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLsl 776 (949)
+|||+||++.+++. |++||+.+....+ ....+++++++++.+++.+ +...+++..+||||||||++|
T Consensus 419 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~i 494 (595)
T 2yl4_A 419 KIGTVSQEPILFSC-SIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494 (595)
T ss_dssp SEEEECSSCCCCSS-BHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHH
T ss_pred ceEEEccCCcccCC-CHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 99999999999975 9999999853211 1122456788888887631 012234458999999999999
Q ss_pred HHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 777 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 777 A~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
||||+.+|++++|||||+|||+.+++.+++.|++.++|+|+|++||++++++. ||||++|++|++++.|+++++.++
T Consensus 495 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp HHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEEEEEETTEEEEEECSCC----
T ss_pred HHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999998779999999999999975 999999999999999999999764
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.4e-43 Score=422.16 Aligned_cols=219 Identities=24% Similarity=0.412 Sum_probs=190.8
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++. ++.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. +.++.
T Consensus 338 ~~i~~~~v~~~y~~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CCEEEEEEEECSCSS----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 469999999999742 3579999999999999999999999999999999999999999999999999975 55678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|+++||+||++.+|+. |++||+.+... . ..++++.+.++..++.+ +...+++..+||||||||+
T Consensus 414 r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv 486 (578)
T 4a82_A 414 RNQIGLVQQDNILFSD-TVKENILLGRP-----T-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486 (578)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHGGGCS-----S-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred hhheEEEeCCCccCcc-cHHHHHhcCCC-----C-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH
Confidence 8999999999999987 99999987421 1 11345566666665531 1233455679999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
++||||+.+|++++|||||+|||+.+++.+.+.|++.++|+|+|++||++++++. ||||++|++|++++.|+++++.++
T Consensus 487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999875 999999999999999999999875
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
.
T Consensus 566 ~ 566 (578)
T 4a82_A 566 Q 566 (578)
T ss_dssp T
T ss_pred C
Confidence 3
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.7e-43 Score=421.62 Aligned_cols=220 Identities=21% Similarity=0.403 Sum_probs=192.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|+++ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +..+.
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415 (582)
T ss_dssp CCEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CcEEEEEEEEEcCCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHH
Confidence 469999999999731 2569999999999999999999999999999999999999999999999999975 45677
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|+++||+||++.+|+. |++||+.++.. .+. .+++++++++.+++.+ +...+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 416 RNQVALVSQNVHLFND-TVANNIAYART-EEY----SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHHTTTT-SCC----CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred HhhCeEEccCCcCCCC-CHHHHHhccCC-CCC----CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 8899999999999985 99999987531 111 2356777787777642 1233456789999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|++++|||||+|||+.+++.+++.|++.++|+|+|++||++++++ .||||++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999999877999999999999986 6999999999999999999999876
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
.
T Consensus 569 ~ 569 (582)
T 3b60_A 569 H 569 (582)
T ss_dssp T
T ss_pred C
Confidence 3
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3e-43 Score=419.95 Aligned_cols=218 Identities=24% Similarity=0.452 Sum_probs=189.5
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++. ++.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. +.+++
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN----TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CCEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHH
T ss_pred CcEEEEEEEEEcCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHH
Confidence 469999999999642 3579999999999999999999999999999999999999999999999999975 55678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++|||+||++.+|+. |++||+.+... ... ++++.+.++..++.+ +...+++..+||||||||+
T Consensus 416 r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 416 RGHISAVPQETVLFSG-TIKENLKWGRE--DAT----DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHTTTCS--SCC----HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred HhheEEECCCCcCcCc-cHHHHHhccCC--CCC----HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence 8999999999999976 99999986421 111 233344444443310 1355778899999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|++++|||||++||+.+++.+.+.|++.++|+|+|++||+++.+. .||||++|++|++++.|+++++.++
T Consensus 489 ~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999888999999999999986 7999999999999999999999875
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-43 Score=421.77 Aligned_cols=218 Identities=22% Similarity=0.430 Sum_probs=188.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|++ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 353 ~~i~~~~v~~~y~~-----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK-----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CCEEEEEEECCSSS-----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEECCC-----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH
Confidence 36999999999964 3569999999999999999999999999999999999999999999999999975 56678
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|+++||+||++.+|+. |++||+.+... +.+. +++.+.++.+++.+ +...++...+||||||||+
T Consensus 428 r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv 500 (598)
T 3qf4_B 428 RSSIGIVLQDTILFST-TVKENLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500 (598)
T ss_dssp HHHEEEECTTCCCCSS-BHHHHHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH
T ss_pred HhceEEEeCCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 8999999999999975 99999987421 1222 33455555555531 0122344579999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|++++|||||+|||+.+++.+.+.|++..+|+|+|++||++++++. ||||++|++|++++.|+++++.++
T Consensus 501 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988789999999999999976 999999999999999999999876
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
.
T Consensus 580 ~ 580 (598)
T 3qf4_B 580 R 580 (598)
T ss_dssp T
T ss_pred C
Confidence 3
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.9e-42 Score=375.91 Aligned_cols=199 Identities=21% Similarity=0.332 Sum_probs=157.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..|+++||++.+ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~--------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99 (290)
T ss_dssp -----------C--------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------
T ss_pred ceEEEEEEEEcC--------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------
Confidence 469999999854 3599999999999999999999999999999999999999999999998
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 775 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRLs 775 (949)
+|||+||++.+++. |++||+. ... ... ..+.+.++.+++.+ ....++++.+||||||||++
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~ 169 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TTC---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Ccc---cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHH
Confidence 39999999999885 9999997 221 111 12334444444421 01234456899999999999
Q ss_pred HHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 776 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 776 lA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L-~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
|||||+.+|+++||||||+|||+.+++.+++.+ ++.++|+|||++||++++++ .|||+++|++|+++..|+++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999999999999999974 45556899999999999986 599999999999999999999864
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.5e-41 Score=430.21 Aligned_cols=226 Identities=26% Similarity=0.508 Sum_probs=195.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++||+++|+++ ++.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.|+++ +.+.+
T Consensus 1075 g~I~f~nVsf~Y~~~---~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER---PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CCEEEEEEEECCTTS---CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHH
T ss_pred CeEEEEEEEEeCCCC---CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHH
Confidence 369999999999753 34679999999999999999999999999999999999999999999999999986 77889
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC------C---CcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH------G---GVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~------~---~~~~~~~~~LSGGqKqRL 774 (949)
|++|||+||++.||+. |++|||.++.. +.+..++++.++++..++.+ + ........+||||||||+
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gld----~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGLD----PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSSC----TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred HhheEEECCCCEeeCc-cHHHHHhccCC----CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH
Confidence 9999999999999997 99999976421 12233567788888887631 0 122334457999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+|||||||||+||+++.+.+.+.|++..+|+|+|+++|.++.+.. ||||++|++|++++.|++++|.++
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999998889999999999999875 999999999999999999999988
Q ss_pred cCCcE
Q 002236 855 YGGSY 859 (949)
Q Consensus 855 ~g~~y 859 (949)
-|..+
T Consensus 1306 ~g~y~ 1310 (1321)
T 4f4c_A 1306 KGAYY 1310 (1321)
T ss_dssp C----
T ss_pred CcHHH
Confidence 55433
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.1e-39 Score=413.59 Aligned_cols=220 Identities=27% Similarity=0.483 Sum_probs=189.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|++|.|+++ +++.+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+.. +.+.+
T Consensus 386 g~i~~~~v~~~y~~~---~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR---KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CCEEEEEEEECCSST---TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCC---CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHH
Confidence 359999999999753 23579999999999999999999999999999999999999999999999999975 56778
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++||||||++.+|+. |++||+.+... .... +++.+.++..++.+ +...++...+||||||||+
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri 535 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRE--DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCS--SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH
Confidence 8999999999999987 99999998632 1222 23334444333310 1234566779999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+|+||||||++||+.+++.+.+.+++..+|+|+|++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 536 aiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 536 AIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999888889999999999999976 999999999999999999999875
Q ss_pred c
Q 002236 855 Y 855 (949)
Q Consensus 855 ~ 855 (949)
.
T Consensus 615 ~ 615 (1284)
T 3g5u_A 615 K 615 (1284)
T ss_dssp T
T ss_pred C
Confidence 4
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-39 Score=418.50 Aligned_cols=223 Identities=22% Similarity=0.467 Sum_probs=189.8
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|+++ +++.+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|+|++. +.+.+
T Consensus 1029 g~i~~~~v~~~y~~~---~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR---PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CCEEEEEEEBCCSCG---GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHH
T ss_pred CcEEEEEEEEECCCC---CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHH
Confidence 359999999999753 23569999999999999999999999999999999999999999999999999975 56778
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++|||+||++.+|+ .|++||+.+....+..+ ++++.+.++..++.+ +........+|||||||||
T Consensus 1106 r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv 1180 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180 (1284)
T ss_dssp TTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH
T ss_pred HhceEEECCCCcccc-ccHHHHHhccCCCCCCC----HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHH
Confidence 899999999999886 59999998753322222 233444555544421 0122334568999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||+.+|+||||||||+|||+.+++.+++.|++..+|+|||++||++++++. ||||++|++|++++.|+++++.++
T Consensus 1181 ~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1181 AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999965 999999999999999999999886
Q ss_pred cC
Q 002236 855 YG 856 (949)
Q Consensus 855 ~g 856 (949)
.|
T Consensus 1260 ~g 1261 (1284)
T 3g5u_A 1260 KG 1261 (1284)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.9e-39 Score=413.85 Aligned_cols=221 Identities=24% Similarity=0.457 Sum_probs=194.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 703 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~ 703 (949)
..|+++|+++.|+++ +++++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.|++. +.+.+
T Consensus 414 g~I~~~nvsF~Y~~~---~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR---PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CCEEEEEEEECCSSS---TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CcEEEEEeeeeCCCC---CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHH
Confidence 369999999999753 35789999999999999999999999999999999999999999999999999986 67789
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~---------~~~~~~~~~~LSGGqKqRL 774 (949)
|++||||||++.||+. |++|||.|+. + ...++++.++++..++.+ +........+||||||||+
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~-----~-~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGK-----E-GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTC-----T-TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hhcccccCCcceeeCC-chhHHHhhhc-----c-cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 9999999999999987 9999998752 1 122455666766666521 1233455678999999999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHh
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 854 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~ 854 (949)
+||||++.+|+|+|||||||+||+.+++.+.+.|.+..+|||+|++||+++.+. .||+|++|++|++++.|+.+||.++
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTT
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHHh
Confidence 999999999999999999999999999999999999889999999999999886 5999999999999999999999876
Q ss_pred cC
Q 002236 855 YG 856 (949)
Q Consensus 855 ~g 856 (949)
-|
T Consensus 643 ~g 644 (1321)
T 4f4c_A 643 QG 644 (1321)
T ss_dssp TC
T ss_pred hh
Confidence 44
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-38 Score=378.72 Aligned_cols=204 Identities=25% Similarity=0.313 Sum_probs=181.1
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+++++|++|.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +
T Consensus 356 ~~l~~~~l~~~~~~-------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------~ 416 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS-------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------D 416 (607)
T ss_dssp EEEEECCEEEECSS-------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------C
T ss_pred eEEEEeceEEEecc-------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------------e
Confidence 47899999999963 3799999999999999999999999999999999999999999975 2
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
.+|||+||+..+.+.+||+|++....... ....+.++++++.+++. +..++++.+|||||||||+||+||+.+|
T Consensus 417 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 417 LTVAYKPQYIKAEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGII--DLYDRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCT--TTTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred eEEEEEecCccCCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 46999999988878899999887641110 01235678899999996 4789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeC--CEEEEEcCHHHHHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 853 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~--G~l~~~Gs~~~Lk~ 853 (949)
++|||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++ |++...|+++++..
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999986 3599999999999999999999999996 88888999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.6e-38 Score=373.58 Aligned_cols=204 Identities=24% Similarity=0.324 Sum_probs=180.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..++++|+++.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ .
T Consensus 286 ~~l~~~~l~~~~~~-------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------~ 346 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS-------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------D 346 (538)
T ss_dssp EEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------C
T ss_pred eEEEEeeEEEEECC-------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------------C
Confidence 46899999999963 4799999999999999999999999999999999999999999975 2
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
..|||+||+..+.+.+||.|++...... +.. ..+.++++++.+++. +..++++.+|||||||||+||+||+.+|
T Consensus 347 ~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 347 LTVAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGII--DLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCG--GGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred ceEEEEecCCcCCCCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 4699999998877889999988754111 111 135678899999996 4789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEeC--CEEEEEcCHHHHHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 853 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~~--G~l~~~Gs~~~Lk~ 853 (949)
++|||||||+|||+.+++.++++|+++. +|+|||++|||++++..+||||++|++ |++...|+++++..
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999863 499999999999999999999999996 78888999987764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.5e-38 Score=369.77 Aligned_cols=205 Identities=23% Similarity=0.290 Sum_probs=177.3
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
..++++|++|.|++ ..+++.||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 268 ~~l~~~~l~~~~~~-------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~----------- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK----------- 329 (538)
T ss_dssp EEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----------
T ss_pred ceEEEcceEEEECC-------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 47899999999963 468888999999999999999999999999999999999999999765
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.++|+||+......+||+|++.+.... ... .....++++++.++|. +..++++.+|||||||||+|||||+.+|
T Consensus 330 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~--~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGq~QRv~iAraL~~~p 404 (538)
T 3ozx_A 330 QILSYKPQRIFPNYDGTVQQYLENASKD-ALS--TSSWFFEEVTKRLNLH--RLLESNVNDLSGGELQKLYIAATLAKEA 404 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHCSS-TTC--TTSHHHHHTTTTTTGG--GCTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred eeeEeechhcccccCCCHHHHHHHhhhh-ccc--hhHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3589999997777788999999874211 111 1234678899999996 4889999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeC--CEEEEEcCHHHHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELK 852 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~--G~l~~~Gs~~~Lk 852 (949)
+||||||||+|||+.+++.++++|+++ +.|+|||++|||++++..+||||++|++ |.....+++.++.
T Consensus 405 ~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999986 3589999999999999999999999986 5566666665443
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6e-37 Score=366.10 Aligned_cols=198 Identities=25% Similarity=0.343 Sum_probs=166.5
Q ss_pred cEEE--------EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE--------
Q 002236 626 AIIS--------DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-------- 689 (949)
Q Consensus 626 ~I~v--------~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I-------- 689 (949)
+|++ +||+|.|++ ...+++|+| ++++||++||+||||||||||+|+|+|+++|++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~ 156 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV-----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVI 156 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHH
T ss_pred eEEEecCCccccCCeEEEECC-----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhh
Confidence 5777 889999964 125999999 999999999999999999999999999999999996
Q ss_pred -EEcCeecCccHH---HhhccEEEEcCCCCCCC---CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc
Q 002236 690 -YVQGLDIRTDMD---RIYTSMGVCPQEDLLWE---TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 762 (949)
Q Consensus 690 -~i~G~di~~~~~---~~r~~iG~~pQ~~~L~~---~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~ 762 (949)
.++|.++..... ..+..+++++|+..+.+ ..|++|++.. +. ..++++++++.+||. ...+++
T Consensus 157 ~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~~-----~~~~~~~~L~~lgL~--~~~~~~ 225 (607)
T 3bk7_A 157 RAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----VD-----EVGKFEEVVKELELE--NVLDRE 225 (607)
T ss_dssp HHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----TC-----CSSCHHHHHHHTTCT--TGGGSB
T ss_pred heeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----hH-----HHHHHHHHHHHcCCC--chhCCC
Confidence 456766532111 12346899999743322 1399999863 11 124578899999997 478999
Q ss_pred CCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCC
Q 002236 763 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 840 (949)
Q Consensus 763 ~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G 840 (949)
+.+|||||||||+||+||+.+|++|||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+||||++|.+|
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999999986 46999999999999999999999999864
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=361.10 Aligned_cols=202 Identities=23% Similarity=0.312 Sum_probs=173.0
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCC-----cEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~G-----ei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
+++.+.|++ .+.+++++||++++| |++||+||||||||||+|+|+|+++|++|+. +. +
T Consensus 350 ~~~~~~y~~-----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~ 412 (608)
T 3j16_B 350 ASRAFSYPS-----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------K 412 (608)
T ss_dssp SSSCCEECC-----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------S
T ss_pred cceeEEecC-----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc------C
Confidence 345667763 246899999999999 8899999999999999999999999999972 21 2
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
..++|+||+.......|++|++.. .+++.. ...+.++++++.++|. +..++++.+|||||||||+||+||+.+|
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~--~~~~~~--~~~~~~~~~l~~l~l~--~~~~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFK--KIRGQF--LNPQFQTDVVKPLRID--DIIDQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHH--HCSSTT--TSHHHHHHTHHHHTST--TTSSSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred CcEEEecccccccCCccHHHHHHH--Hhhccc--ccHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 469999999776666799998753 222211 1235678899999997 4899999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCcEEEEEcCCHHHHHHhcCEEEEEeC--CEEEEEcCHHHHHHh
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKAR 854 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~--~~g~tIIltTH~meeae~l~drI~Im~~--G~l~~~Gs~~~Lk~~ 854 (949)
+||||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+||||++|++ |++...|+|+++...
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999985 3599999999999999999999999997 899999999888653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.8e-37 Score=360.50 Aligned_cols=197 Identities=23% Similarity=0.305 Sum_probs=163.2
Q ss_pred EEE-EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE---------EEcCeec
Q 002236 627 IIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA---------YVQGLDI 696 (949)
Q Consensus 627 I~v-~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I---------~i~G~di 696 (949)
.++ +||+|.|++ ...+++|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++
T Consensus 21 ~~~~~~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~ 94 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94 (538)
T ss_dssp ---CCCEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTH
T ss_pred hhHhcCcEEEECC-----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccH
Confidence 344 689999974 125999999 999999999999999999999999999999999995 4567655
Q ss_pred CccH---HHhhccEEEEcCCCCCCCC---CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 697 RTDM---DRIYTSMGVCPQEDLLWET---LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 697 ~~~~---~~~r~~iG~~pQ~~~L~~~---lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
.... ...+..+++++|+..+++. .|++|++... +..++++++++.+||. ...++++.+|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------~~~~~~~~~l~~lgl~--~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------DETGKLEEVVKALELE--NVLEREIQHLSGGE 163 (538)
T ss_dssp HHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---------CSSSCHHHHHHHTTCT--TTTTSBGGGCCHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---------hHHHHHHHHHHHcCCC--hhhhCChhhCCHHH
Confidence 3211 1123468999997544332 3899987531 1124578899999997 47899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEEeCC
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 840 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im~~G 840 (949)
||||+||+||+.+|++|||||||++||+.+++.+++.|+++ ++|.|||++||++++++.+||||++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999986 46999999999999999999999999864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.6e-36 Score=373.09 Aligned_cols=206 Identities=24% Similarity=0.344 Sum_probs=166.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|+++|++|.|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 670 ~mL~v~nLs~~Y~g~----~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~---------- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGT----SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN---------- 735 (986)
T ss_dssp EEEEEEEEEECCTTC----SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT----------
T ss_pred ceEEEEeeEEEeCCC----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc----------
Confidence 479999999999642 256999999999999999999999999999999999999999999999862
Q ss_pred ccEEEEcCCCCC----CCCCCHHHHHHHHhh-------------------------------------------------
Q 002236 705 TSMGVCPQEDLL----WETLTGREHLLFYGR------------------------------------------------- 731 (949)
Q Consensus 705 ~~iG~~pQ~~~L----~~~lTv~E~L~~~~~------------------------------------------------- 731 (949)
.++||++|+... ....|++|++.+...
T Consensus 736 ~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~ 815 (986)
T 2iw3_A 736 CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 815 (986)
T ss_dssp CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEE
T ss_pred cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccc
Confidence 147777776421 123466666543110
Q ss_pred ----------------------------------------------------hcCCCchhHHHHHHHHHHHcCCCCCCc-
Q 002236 732 ----------------------------------------------------LKNLKGPALTQAVEESLKSVNLFHGGV- 758 (949)
Q Consensus 732 ----------------------------------------------------l~g~~~~~~~~~v~~~L~~l~L~~~~~- 758 (949)
..|......+++++++++.+||.+ ..
T Consensus 816 ~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~-~~~ 894 (986)
T 2iw3_A 816 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDP-EIV 894 (986)
T ss_dssp EEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCH-HHH
T ss_pred hhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCc-hhh
Confidence 001111112457889999999962 23
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 759 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 759 ~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
.++++++|||||||||+||+||+.+|++|||||||+|||+.+++.+++.|++. |.|||++||++++++.+|||+++|.
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCB
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 58899999999999999999999999999999999999999999999998755 5799999999999999999999999
Q ss_pred CCEEEEEcC
Q 002236 839 DGSLQCIGN 847 (949)
Q Consensus 839 ~G~l~~~Gs 847 (949)
+|+++..|+
T Consensus 973 ~G~Iv~~G~ 981 (986)
T 2iw3_A 973 DGRMTPSGH 981 (986)
T ss_dssp TTBCCC---
T ss_pred CCEEEEeCC
Confidence 999987764
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.6e-35 Score=364.11 Aligned_cols=199 Identities=20% Similarity=0.295 Sum_probs=173.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.+...|++|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+| |+| +|.+... +.
T Consensus 435 ~L~~~~ls~~yg~------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~ 495 (986)
T 2iw3_A 435 DLCNCEFSLAYGA------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----EC 495 (986)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TS
T ss_pred eeEEeeEEEEECC------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----ce
Confidence 5777799999973 579999999999999999999999999999999995 554 5554321 12
Q ss_pred cEEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 706 SMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 706 ~iG~~pQ~~-~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+++|++|+. .+++.+|+.|++.+ ...+. +++++++++.+||.+ ...++++++|||||||||+||+||+.+|
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~-~~~~~~~~~LSGGqkQRvaLArAL~~~P 567 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTD-EMIAMPISALSGGWKMKLALARAVLRNA 567 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCH-HHHHSBGGGCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 479999984 78889999999975 22221 567899999999952 3679999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EEcCHHHHHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKA 853 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~-~~Gs~~~Lk~ 853 (949)
++|||||||+|||+.+++.+++.|++ +|+|||++||++++++.+|||+++|++|+++ ..|+++++..
T Consensus 568 ~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 568 DILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999988 6899999999999999999999999999997 6899988753
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.8e-36 Score=361.17 Aligned_cols=204 Identities=20% Similarity=0.290 Sum_probs=142.7
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHH---------------------HHHhCCCCCC-------cceEEEcCeec
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFI---------------------SMMIGITRTT-------SGTAYVQGLDI 696 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLl---------------------k~L~Gl~~pt-------sG~I~i~G~di 696 (949)
+.+|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5699999999999999999999999999998 9999999999 45566666554
Q ss_pred CccHHHhhccEEEEcCCCC-------------------CCCCCCHHHHHHHHhhhcCCC--chhHH------HHHHHHHH
Q 002236 697 RTDMDRIYTSMGVCPQEDL-------------------LWETLTGREHLLFYGRLKNLK--GPALT------QAVEESLK 749 (949)
Q Consensus 697 ~~~~~~~r~~iG~~pQ~~~-------------------L~~~lTv~E~L~~~~~l~g~~--~~~~~------~~v~~~L~ 749 (949)
.. ..++.+|+++|... .++.+|++||+.++..+.... ....+ ....++++
T Consensus 111 ~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 111 SR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred hc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 32 12334555555332 346789999998864332111 10001 11124588
Q ss_pred HcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHH
Q 002236 750 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEE 826 (949)
Q Consensus 750 ~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~--vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~mee 826 (949)
.+||.+ ...++++.+|||||||||+|||||+.+|+ +|||||||+||||.+++.++++|+++ ++|.|||++|||+++
T Consensus 188 ~~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 188 NVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HTTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HcCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 999963 34789999999999999999999999998 99999999999999999999999986 469999999999998
Q ss_pred HHHhcCEEEEE------eCCEEEEEcCHHHHHH
Q 002236 827 AEALCDRLGIF------VDGSLQCIGNPKELKA 853 (949)
Q Consensus 827 ae~l~drI~Im------~~G~l~~~Gs~~~Lk~ 853 (949)
++. |||+++| ++|++++.|+++++.+
T Consensus 267 ~~~-~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 267 MLA-ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHH-CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred Hhh-CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 875 9999999 8999999999999864
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-34 Score=338.06 Aligned_cols=196 Identities=21% Similarity=0.316 Sum_probs=153.7
Q ss_pred eEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE-----------EEcCeecCcc
Q 002236 631 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-----------YVQGLDIRTD 699 (949)
Q Consensus 631 nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I-----------~i~G~di~~~ 699 (949)
|++|+|+. ....+++++ .+++||++||+||||||||||+|+|+|+++|++|+| ++.|.++...
T Consensus 82 ~~~~~Y~~-----~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~ 155 (608)
T 3j16_B 82 HVTHRYSA-----NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155 (608)
T ss_dssp TEEEECST-----TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHH
T ss_pred CeEEEECC-----CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhh
Confidence 45777864 235778777 699999999999999999999999999999999998 3444433221
Q ss_pred HH-HhhccE--EEEcCCCCC------CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 700 MD-RIYTSM--GVCPQEDLL------WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 700 ~~-~~r~~i--G~~pQ~~~L------~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
.. ...+.+ .+.+|.... -+..++.+++... .+..+++++++++.+||. ...++++.+|||||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-------~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGe 226 (608)
T 3j16_B 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-------MEKSPEDVKRYIKILQLE--NVLKRDIEKLSGGE 226 (608)
T ss_dssp HHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-------CCSCHHHHHHHHHHHTCT--GGGGSCTTTCCHHH
T ss_pred hhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-------hhhHHHHHHHHHHHcCCc--chhCCChHHCCHHH
Confidence 11 112222 344554211 1123566655432 112346788999999997 48999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
||||+||+||+.+|++|||||||+||||.+++.++++|++++ +|+|||++||++++++.+||||++|.+|.
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999874 58999999999999999999999998764
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.1e-33 Score=339.93 Aligned_cols=201 Identities=21% Similarity=0.347 Sum_probs=157.7
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh----------------------CCCCCCcceEEEcCeecCccHH-
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------------GITRTTSGTAYVQGLDIRTDMD- 701 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~----------------------Gl~~ptsG~I~i~G~di~~~~~- 701 (949)
+.+|+||||+|++||++||+||||||||||+++|. |+..+ +|.+.++|.++.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46999999999999999999999999999998753 44444 4688898887742110
Q ss_pred ---H-------------------h-------------------hccEEEEcCCCCCCC----------------------
Q 002236 702 ---R-------------------I-------------------YTSMGVCPQEDLLWE---------------------- 718 (949)
Q Consensus 702 ---~-------------------~-------------------r~~iG~~pQ~~~L~~---------------------- 718 (949)
. + ....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0 0 012244444333222
Q ss_pred ----------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---c
Q 002236 719 ----------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---K 785 (949)
Q Consensus 719 ----------~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P---~ 785 (949)
.+|++||+.++.... ..+++.+.++.+++.. ...++++.+|||||||||+|||||+.+| +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~------~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~ 566 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIP------KIKRKLETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 566 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCH------HHHHHHHHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhh------hHHHHHHHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCCCCCc
Confidence 479999998864321 2345677888999963 3578999999999999999999999887 5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHHh
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 854 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~~ 854 (949)
+|||||||+||||.+++.++++|+++ ++|+|||++|||+++++ .||||++| ++|++++.|+++++.+.
T Consensus 567 llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 567 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 99999999999999999999999986 46999999999999985 69999999 89999999999999753
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-33 Score=331.87 Aligned_cols=192 Identities=24% Similarity=0.270 Sum_probs=153.4
Q ss_pred eEEEEcCCCCCCCccceeeeeEEEE-eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE-----------EEcCeecCc
Q 002236 631 NLRKIYPGRDGNPEKVAVNGLSLAL-PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-----------YVQGLDIRT 698 (949)
Q Consensus 631 nL~K~Y~~~~~~~~~~al~~lSl~v-~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I-----------~i~G~di~~ 698 (949)
+.+.+|+. ..++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|.++..
T Consensus 4 ~~~~~~~~-------~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 4 EVIHRYKV-------NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp CEEEESST-------TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CCceecCC-------CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHH
Confidence 56788974 2344444554 4999999999999999999999999999999998 677776643
Q ss_pred cHHHh---hccEEEEcCCC----CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 002236 699 DMDRI---YTSMGVCPQED----LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (949)
Q Consensus 699 ~~~~~---r~~iG~~pQ~~----~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK 771 (949)
..... ...+...+|.. .++. .|++|++... +.+++++++++.+++. ...++++.+||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 77 YFKELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI---------DERGKKDEVKELLNMT--NLWNKDANILSGGGL 144 (538)
T ss_dssp HHHHHHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH---------CCSSCHHHHHHHTTCG--GGTTSBGGGCCHHHH
T ss_pred HHHHHhhcccchhhccchhhhhhhhcc-CcHHHHhhcc---------hhHHHHHHHHHHcCCc--hhhcCChhhCCHHHH
Confidence 21111 12344444443 2333 3788765421 1123567899999996 478999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
|||+||+||+.+|++|||||||+|||+.+++.++++|+++++|+|||++||++++++.+||||.+|.+|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999998779999999999999999999999998753
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=1.5e-31 Score=327.70 Aligned_cols=211 Identities=24% Similarity=0.324 Sum_probs=164.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHH-HhCCC-------CC------------
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISM-MIGIT-------RT------------ 684 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~-L~Gl~-------~p------------ 684 (949)
..|+++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 501 ~~L~v~~l~~-----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~ 569 (842)
T 2vf7_A 501 GWLELNGVTR-----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADH 569 (842)
T ss_dssp CEEEEEEEEE-----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC---------------
T ss_pred ceEEEEeeee-----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccc
Confidence 4689999974 26999999999999999999999999999997 76543 23
Q ss_pred ------Ccc-------eEEEcCeecCccH-----------HHhhc---------cEEEEcCC------------------
Q 002236 685 ------TSG-------TAYVQGLDIRTDM-----------DRIYT---------SMGVCPQE------------------ 713 (949)
Q Consensus 685 ------tsG-------~I~i~G~di~~~~-----------~~~r~---------~iG~~pQ~------------------ 713 (949)
.+| .|.++|.++.... +.+|+ ..||.++.
T Consensus 570 ~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~ 649 (842)
T 2vf7_A 570 TAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGW 649 (842)
T ss_dssp --CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSE
T ss_pred ccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCc
Confidence 467 6889988874321 12221 22332221
Q ss_pred ----CCC------------------------CC--------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCC
Q 002236 714 ----DLL------------------------WE--------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 757 (949)
Q Consensus 714 ----~~L------------------------~~--------~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~ 757 (949)
-.+ +. .+|++|++.|+.. ....+++.++|+.++|.. .
T Consensus 650 ~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~~~~~~~~~~L~~~gL~~-~ 722 (842)
T 2vf7_A 650 VMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD------ESAIFRALDTLREVGLGY-L 722 (842)
T ss_dssp EEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------SHHHHHHHHHHHHTTCTT-S
T ss_pred cchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------chHHHHHHHHHHHcCCCc-c
Confidence 111 11 2456666655422 122357889999999963 2
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCC---CcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCE
Q 002236 758 VADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDR 833 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~ALi~~---P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~dr 833 (949)
..++++.+|||||||||+||++|+.+ |+|+||||||+|||+.+++.++++|+++ ++|+|||++||+++++ ..|||
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDr 801 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDW 801 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSE
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCE
Confidence 46899999999999999999999996 7999999999999999999999999986 5799999999999999 68999
Q ss_pred EEEE------eCCEEEEEcCHHHHHHh
Q 002236 834 LGIF------VDGSLQCIGNPKELKAR 854 (949)
Q Consensus 834 I~Im------~~G~l~~~Gs~~~Lk~~ 854 (949)
|++| ++|+++..|+++++.+.
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9999 79999999999998754
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=2.7e-31 Score=326.21 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=167.4
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh-CCC-------CCCcc---------
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-GIT-------RTTSG--------- 687 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~-Gl~-------~ptsG--------- 687 (949)
..|+++|+++ .+|+||||+|++||++||+|+||||||||+++|. |.+ .++.|
T Consensus 628 ~~L~v~~l~~-----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4688888851 3799999999999999999999999999999853 221 12333
Q ss_pred ----eEEEcCeecCcc----H-------HHh---------hccEEEEcCCCCCC--------------------------
Q 002236 688 ----TAYVQGLDIRTD----M-------DRI---------YTSMGVCPQEDLLW-------------------------- 717 (949)
Q Consensus 688 ----~I~i~G~di~~~----~-------~~~---------r~~iG~~pQ~~~L~-------------------------- 717 (949)
.|.++|.++... . +.+ .+.+||+||...+.
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 378888877421 1 011 13468888853221
Q ss_pred --------------------C--------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 002236 718 --------------------E--------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (949)
Q Consensus 718 --------------------~--------~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG 769 (949)
. .||+.|++.|+..+. . .+++.++|+.+||.. ...++++.+||||
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~-----~-~~~~~~~L~~~gL~~-~~l~~~~~~LSGG 849 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP-----K-IKRKLETLYDVGLGY-MKLGQPATTLSGG 849 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH-----H-HHHHHHHHHHTTCSS-SBTTCCGGGCCHH
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch-----h-HHHHHHHHHHcCCCc-ccccCchhhCCHH
Confidence 0 468888888764321 1 234578999999963 2678999999999
Q ss_pred HHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eC
Q 002236 770 MKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VD 839 (949)
Q Consensus 770 qKqRLslA~ALi~~P---~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~ 839 (949)
|||||+||+||+.+| +++||||||+|||+.+++.++++|+++ ++|+|||++||++++++ .||||++| ++
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCC
Confidence 999999999999875 999999999999999999999999986 56999999999999985 79999999 78
Q ss_pred CEEEEEcCHHHHHHh
Q 002236 840 GSLQCIGNPKELKAR 854 (949)
Q Consensus 840 G~l~~~Gs~~~Lk~~ 854 (949)
|++++.|+++++.+.
T Consensus 929 G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEV 943 (972)
T ss_dssp CSEEEEESHHHHHTC
T ss_pred CEEEEecCHHHHHhC
Confidence 999999999999764
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.6e-30 Score=321.19 Aligned_cols=202 Identities=21% Similarity=0.337 Sum_probs=160.9
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHH---------HHHhCCCCCCc------c------eEEEcCeecCccH---
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFI---------SMMIGITRTTS------G------TAYVQGLDIRTDM--- 700 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLl---------k~L~Gl~~pts------G------~I~i~G~di~~~~--- 700 (949)
..+|+||||+|++||++||+|+||||||||+ +++.|...+.. | .+.+++.++....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 45555544433 3 2444444432100
Q ss_pred --------HH-------------------------------hhccEEEEcCCCCCCC-----------------------
Q 002236 701 --------DR-------------------------------IYTSMGVCPQEDLLWE----------------------- 718 (949)
Q Consensus 701 --------~~-------------------------------~r~~iG~~pQ~~~L~~----------------------- 718 (949)
+. ..+..|+++|+..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 00 1134577777766554
Q ss_pred ---------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---cE
Q 002236 719 ---------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KV 786 (949)
Q Consensus 719 ---------~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P---~v 786 (949)
.+|++|++.|+... ....++.++|+.+||.. ...++++.+|||||||||+||+||+.+| +|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~L 829 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTL 829 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEE
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCE
Confidence 37899999887532 22356788999999963 3468999999999999999999999875 79
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHHh
Q 002236 787 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 854 (949)
Q Consensus 787 llLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~~ 854 (949)
+||||||+|||+.+++.++++|+++ ++|+|||++||+|+++.. ||||++| ++|++++.|+++++.+.
T Consensus 830 LILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 830 YILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999986 569999999999999865 9999999 89999999999999864
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=1.4e-30 Score=320.84 Aligned_cols=211 Identities=21% Similarity=0.319 Sum_probs=164.7
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh-C----CCC---CCcce--------
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-G----ITR---TTSGT-------- 688 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~-G----l~~---ptsG~-------- 688 (949)
..++++|+++ .+|+||||+|++||++||+|+||||||||+++|. | .+. +..|.
T Consensus 646 ~~L~v~~l~~-----------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~ 714 (993)
T 2ygr_A 646 RQLTVVGARE-----------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLD 714 (993)
T ss_dssp SEEEEEEECS-----------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCT
T ss_pred ceEEEecCcc-----------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCcc
Confidence 4688998851 2799999999999999999999999999999853 2 222 23443
Q ss_pred -----EEEcCeecCc----cH-------HHh---------hccEEEEcCCCCCC----------------------C---
Q 002236 689 -----AYVQGLDIRT----DM-------DRI---------YTSMGVCPQEDLLW----------------------E--- 718 (949)
Q Consensus 689 -----I~i~G~di~~----~~-------~~~---------r~~iG~~pQ~~~L~----------------------~--- 718 (949)
|.++|.++.. +. +.+ .+..||.||...+. +
T Consensus 715 ~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~ 794 (993)
T 2ygr_A 715 YLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVY 794 (993)
T ss_dssp TCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEE
T ss_pred ccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccce
Confidence 4555555531 11 011 13468888753221 1
Q ss_pred -----------------------------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 002236 719 -----------------------------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 769 (949)
Q Consensus 719 -----------------------------~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG 769 (949)
.||+.|++.|+..+. . .+++.++|+.+||.. ...++++.+||||
T Consensus 795 ~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~-----~-~~~~~~~L~~lgL~~-~~l~~~~~~LSGG 867 (993)
T 2ygr_A 795 VPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA-----G-VHRYLRTLVDVGLGY-VRLGQPAPTLSGG 867 (993)
T ss_dssp EECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH-----H-HHHHHHHHHHTTGGG-SBTTCCGGGSCHH
T ss_pred eeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch-----H-HHHHHHHHHHcCCCc-ccccCccccCCHH
Confidence 367888888764321 1 234578999999962 2578999999999
Q ss_pred HHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcCEEEEE------eC
Q 002236 770 MKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VD 839 (949)
Q Consensus 770 qKqRLslA~ALi~~P---~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~drI~Im------~~ 839 (949)
|||||+||+||+.+| +|+||||||+|||+.+++.++++|+++ ++|+|||++||+++++ ..||||++| .+
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCC
Confidence 999999999999875 999999999999999999999999986 5699999999999998 479999999 68
Q ss_pred CEEEEEcCHHHHHHh
Q 002236 840 GSLQCIGNPKELKAR 854 (949)
Q Consensus 840 G~l~~~Gs~~~Lk~~ 854 (949)
|++++.|+++++.+.
T Consensus 947 G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAV 961 (993)
T ss_dssp SEEEEEECHHHHHHC
T ss_pred CEEEEecCHHHHHhC
Confidence 999999999999764
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-32 Score=318.78 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=165.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-e-EEEcCeecCccHHH
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-T-AYVQGLDIRTDMDR 702 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG-~-I~i~G~di~~~~~~ 702 (949)
.+++++||+|.|+ ++||++++||+++|+||||||||||+|+|+|+++|++| + |+++|.
T Consensus 117 ~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-------- 176 (460)
T 2npi_A 117 TMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-------- 176 (460)
T ss_dssp THHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--------
T ss_pred chhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--------
Confidence 4678889998883 69999999999999999999999999999999999999 9 999982
Q ss_pred hhccEEEEcCCCC---CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 703 IYTSMGVCPQEDL---LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 703 ~r~~iG~~pQ~~~---L~~~lTv~E~L~~~~~l-~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
.++.+||+||+.. +.+.+|++||+ +.... ++.. ..+++.++++.+|+.+ ..+ +.+|||||||||++|+
T Consensus 177 ~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~--~~~--~~~LSgGq~qrlalAr 248 (460)
T 2npi_A 177 PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLER--INE--NKDLYLECISQLGQVV 248 (460)
T ss_dssp TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSS--GGG--CHHHHHHHHHHHHHHH
T ss_pred ccCCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCc--ccc--hhhhhHHHHHHHHHHH
Confidence 3678999999984 44567999998 54432 2211 1234567788889863 444 8899999999999999
Q ss_pred H--HcCCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHH------HHHHhcCE-----EEEEe-C
Q 002236 779 S--LIGNPKV----VYMDE-PSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME------EAEALCDR-----LGIFV-D 839 (949)
Q Consensus 779 A--Li~~P~v----llLDE-PTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~me------eae~l~dr-----I~Im~-~ 839 (949)
| |+.+|++ +|||| ||+|||+. ++.+++++++. ++|+|++||+++ +++.+||| |++|+ +
T Consensus 249 a~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~ 325 (460)
T 2npi_A 249 GQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL 325 (460)
T ss_dssp HHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC
T ss_pred HHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC
Confidence 9 9999999 99999 99999999 77777776654 678999999988 89999999 99999 9
Q ss_pred CEEEEEcCHHHHH
Q 002236 840 GSLQCIGNPKELK 852 (949)
Q Consensus 840 G~l~~~Gs~~~Lk 852 (949)
|+++ .|++++++
T Consensus 326 G~iv-~g~~~~~~ 337 (460)
T 2npi_A 326 DGVS-AVDDVYKR 337 (460)
T ss_dssp TTCC-CCCHHHHH
T ss_pred CcEE-ECCHHHHh
Confidence 9999 99998874
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=3.1e-29 Score=285.40 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=151.6
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--------------------------------------CCcc
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--------------------------------------TTSG 687 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~--------------------------------------ptsG 687 (949)
.++++++|++++| +++|+|+||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4899999999999 999999999999999999977664 5588
Q ss_pred eEEEcCeecCc-cHHHhhc-cEEEEcCCCCCCCCCCHHHHHHHHhhhcCC----------------------C-------
Q 002236 688 TAYVQGLDIRT-DMDRIYT-SMGVCPQEDLLWETLTGREHLLFYGRLKNL----------------------K------- 736 (949)
Q Consensus 688 ~I~i~G~di~~-~~~~~r~-~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~----------------------~------- 736 (949)
+++++|.++.. +..++.+ .+++++|++.++.. +..++..|.-..... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999864 2344444 48999999876653 555555543221100 0
Q ss_pred -------------------------------chhHHHHHHHHHHHcCCCCCCc---------------------cc----
Q 002236 737 -------------------------------GPALTQAVEESLKSVNLFHGGV---------------------AD---- 760 (949)
Q Consensus 737 -------------------------------~~~~~~~v~~~L~~l~L~~~~~---------------------~~---- 760 (949)
.....+.+.+.++.+++..... ..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0112344556667776642100 00
Q ss_pred ---ccCCC-CChhHHHHHHHHHHHcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEE
Q 002236 761 ---KQAGK-YSGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 834 (949)
Q Consensus 761 ---~~~~~-LSGGqKqRLslA~ALi~~P--~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI 834 (949)
+++++ ||||||||++||++|+.+| ++|||||||+|||+.+++.+.+.|+++.+|++||++||+++.+ ..|||+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeE
Confidence 33333 5999999999999999999 9999999999999999999999999987899999999999877 579999
Q ss_pred EEE----eCCEEEEE
Q 002236 835 GIF----VDGSLQCI 845 (949)
Q Consensus 835 ~Im----~~G~l~~~ 845 (949)
++| .+|+++..
T Consensus 366 ~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 366 YKVEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred EEEEEeccCCceEEE
Confidence 999 89988653
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=4.1e-30 Score=268.62 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=106.2
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
++.+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.......++.+||+||++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecCCchhhhcceEEecCCH--------H
Confidence 36799996 89999999999999999999999999 99999994 3333322224567899999976 4
Q ss_pred HHH-HHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCH
Q 002236 724 EHL-LFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 798 (949)
Q Consensus 724 E~L-~~~----~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp 798 (949)
||+ .+. ..+.+... .++++++++. ++ |||||++|||||+.+|++|||||||+|
T Consensus 77 enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl---------------Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI---------------VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS---------------EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred HHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC---------------chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 454 221 12222111 2345555554 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCHHHHHH
Q 002236 799 ASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 829 (949)
Q Consensus 799 ~sr~~l~~~L~~~~~g~tIIltTH~meeae~ 829 (949)
+++.++++|++.++|+||| +||++++++.
T Consensus 135 -~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 -TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp -CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred -cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 8999999998875689999 9999998764
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=5.4e-26 Score=256.42 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=78.0
Q ss_pred cccCCCCChhHHHHHHHHHHHc------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhcC
Q 002236 760 DKQAGKYSGGMKRRLSVAISLI------GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 832 (949)
Q Consensus 760 ~~~~~~LSGGqKqRLslA~ALi------~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~d 832 (949)
++++.+|||||||||+||+||+ ++|+++||||||+||||.+++.+++.|+++ ++|+|||++||++++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788999999999999999999 899999999999999999999999999986 469999999999998 56799
Q ss_pred EEEEEeCCEEEE
Q 002236 833 RLGIFVDGSLQC 844 (949)
Q Consensus 833 rI~Im~~G~l~~ 844 (949)
|+++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.4e-25 Score=248.39 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=131.0
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-----------------------------------------------
Q 002236 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----------------------------------------------- 682 (949)
Q Consensus 650 ~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~----------------------------------------------- 682 (949)
++++++.+| +++|+|+|||||||++++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 99999999999999999998543
Q ss_pred ---CCCcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHh--------hhcC--C---CchhHH----
Q 002236 683 ---RTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG--------RLKN--L---KGPALT---- 741 (949)
Q Consensus 683 ---~ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~--------~l~g--~---~~~~~~---- 741 (949)
.+.+|.++++|.+++. +.......+|+.||+..+...-++.+++.... .... . ....+.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3345788999988743 33445567887777655443222333221100 0000 0 000011
Q ss_pred -----------------HHHHHHHHHcCCCC----CCcccccCCCCChhHHHHHHHHHHHc----CCCcEEEEeCCCCCC
Q 002236 742 -----------------QAVEESLKSVNLFH----GGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGL 796 (949)
Q Consensus 742 -----------------~~v~~~L~~l~L~~----~~~~~~~~~~LSGGqKqRLslA~ALi----~~P~vllLDEPTsGL 796 (949)
.+..+.++. ++.. .+..++++.+||||||||++||+||+ .+|+++||||||++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 111223332 2210 12357788999999999999999997 789999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEE--EEEeCCEEE
Q 002236 797 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL--GIFVDGSLQ 843 (949)
Q Consensus 797 Dp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI--~Im~~G~l~ 843 (949)
||..++.+++.|++..+|++||++||+++ +..+||++ ++|.+|+-+
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEEEEESSSCEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEEEEEeCCEEE
Confidence 99999999999998877899999999964 56689987 778887543
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=1.1e-28 Score=281.89 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=144.0
Q ss_pred cceeeeeEEEEeCCc--------------------EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 645 KVAVNGLSLALPSGE--------------------CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 645 ~~al~~lSl~v~~Ge--------------------i~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
+.+|++|||+|++|| ++||+||||||||||+|+|+|+.+|++|+|.++|.++. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence 579999999999999 99999999999999999999999999999999997653 1
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh--HHHHHHHHHHHcC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG--MKRRLSVAISLIG 782 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG--qKqRLslA~ALi~ 782 (949)
.|+++|++ .++.+|++|++.+.. . +..++++++.+++.+ . +..+. |||| ||||+.+|+||++
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~--~-~~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYE--Y-DFFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGG--C-SEEEE-EESSCCCHHHHHHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCc--c-CCeEE-eCCCCccHHHHHHHHHHHh
Confidence 28899985 577889988875431 1 235788999999862 3 34444 9999 9999999999999
Q ss_pred ----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHh------cC----CcEEEEEcCCHHH--HHHhcCEEE-EEeC
Q 002236 783 ----------NPKVVYMDEPSTGLDPASRNNLWNVVKRA------KQ----GRAIILTTHSMEE--AEALCDRLG-IFVD 839 (949)
Q Consensus 783 ----------~P~vllLDEPTsGLDp~sr~~l~~~L~~~------~~----g~tIIltTH~mee--ae~l~drI~-Im~~ 839 (949)
+|++++|||||+||||.+++++++.|++. +. .++|+++||.+++ ++++||+|. .|..
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 99999999999999999999999999875 22 3678999999998 999999884 4433
Q ss_pred C
Q 002236 840 G 840 (949)
Q Consensus 840 G 840 (949)
|
T Consensus 254 g 254 (413)
T 1tq4_A 254 Y 254 (413)
T ss_dssp G
T ss_pred c
Confidence 3
No 70
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.92 E-value=4.2e-29 Score=258.92 Aligned_cols=176 Identities=11% Similarity=0.059 Sum_probs=129.1
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCCH
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 722 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lTv 722 (949)
.+.+++| .+|++||++||+||||||||||+|+|+|+++. +.+++..... .....++.+||+||++.+|+.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 4568888 79999999999999999999999999999963 4444322211 112345789999999888888888
Q ss_pred HHHHHH----Hh--hhcCCCchhHHHHHHHH------HHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEe
Q 002236 723 REHLLF----YG--RLKNLKGPALTQAVEES------LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 790 (949)
Q Consensus 723 ~E~L~~----~~--~l~g~~~~~~~~~v~~~------L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLD 790 (949)
.|++.. ++ .++|.+.++.++++++. ++.+|+. ..+++++++|| ||+.+|++++||
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR--AIKKTMPEAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH--HHHHHCTTSEE-----------EEEECSCHHHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH--HHHHhcCCcEE-----------EEEECCCHHHHH
Confidence 887642 22 33455555556666665 5666664 36778888888 999999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 791 EPSTGL----DPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 791 EPTsGL----Dp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
|||+|+ |+..++++++.+++++ +|.|||++|||++++..+||||++|.
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999998 8899999999998863 48999999999999999999999985
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=2.3e-26 Score=231.88 Aligned_cols=146 Identities=17% Similarity=0.184 Sum_probs=103.6
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCC-CCCCCHHHHHHH
Q 002236 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL-WETLTGREHLLF 728 (949)
Q Consensus 650 ~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L-~~~lTv~E~L~~ 728 (949)
|+||++++||+++|+||||||||||+|++.+ |...++ .+.++ |+++|+..- ...-++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~-------~d~~~---g~~~~~~~~~~~~~~~~~~~-- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS-------SDFCR---GLMSDDENDQTVTGAAFDVL-- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE-------HHHHH---HHHCSSTTCGGGHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc-------cHHHH---HHhcCcccchhhHHHHHHHH--
Confidence 6899999999999999999999999998653 211111 12222 667776421 0000111211
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH---------
Q 002236 729 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA--------- 799 (949)
Q Consensus 729 ~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~--------- 799 (949)
...... ....+.. .........|||||||+++|+|++.+|++++|||||+|||+.
T Consensus 63 ------------~~~~~~-~~~~g~~---~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~ 126 (171)
T 4gp7_A 63 ------------HYIVSK-RLQLGKL---TVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQV 126 (171)
T ss_dssp ------------HHHHHH-HHHTTCC---EEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCC
T ss_pred ------------HHHHHH-HHhCCCe---EEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCC
Confidence 111222 2234443 222344566999999999999999999999999999999999
Q ss_pred -------HHHHHHHHHHHh-cCCcEEEEEcCCHHHHHH
Q 002236 800 -------SRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 829 (949)
Q Consensus 800 -------sr~~l~~~L~~~-~~g~tIIltTH~meeae~ 829 (949)
.++.+++.|+++ ++|.|+|++||+++++++
T Consensus 127 ~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 127 EEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 668889988775 459999999999999986
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=3.6e-26 Score=233.06 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=112.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-HHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 738 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~ 738 (949)
.++|+||||||||||+++|+|++. |.++|.+..... ...++++||++|+. ++.+++ .+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~--~~~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI--FSSK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE--EEET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH--HHhh------
Confidence 689999999999999999999985 567776653221 14567899999975 222322 1111
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH-----HcCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHh
Q 002236 739 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS-----LIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRA 811 (949)
Q Consensus 739 ~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A-----Li~~P~vllLDE--PTsGLDp~sr~~l~~~L~~~ 811 (949)
+...+...++++.+||||||||+++|+| ++.+|++++||| ||++||+..++.+++.+++
T Consensus 63 -------------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~- 128 (178)
T 1ye8_A 63 -------------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD- 128 (178)
T ss_dssp -------------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-
T ss_pred -------------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-
Confidence 1111125788899999999999999996 999999999999 9999999999999998865
Q ss_pred cCCcEEEEEc---CCHHHHHHhcCEEEEEeCCEEEE
Q 002236 812 KQGRAIILTT---HSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 812 ~~g~tIIltT---H~meeae~l~drI~Im~~G~l~~ 844 (949)
.+.|+|++| |++++++.+||| .+|++..
T Consensus 129 -~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 -PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp -TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred -CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 467788887 599999999998 4566655
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=3.5e-25 Score=243.78 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=143.3
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-----HHh--hccEEEEcCCCC-CCC
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI--YTSMGVCPQEDL-LWE 718 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-----~~~--r~~iG~~pQ~~~-L~~ 718 (949)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+ +..++|++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 456789999999999999999999999999999999999999999999986421 222 457999999998 899
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc--EEEEeCCCCCC
Q 002236 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGL 796 (949)
Q Consensus 719 ~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~--vllLDEPTsGL 796 (949)
.+|++|++.+.. .++.. ..+++.+|+. +..++++.+|| |||+++|+|++.+|+ +++|| ||+|+
T Consensus 169 ~~~v~e~l~~~~-~~~~d--------~~lldt~gl~--~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 169 ATVLSKAVKRGK-EEGYD--------VVLCDTSGRL--HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHH-HTTCS--------EEEECCCCCS--SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHH-HcCCc--------chHHhcCCCC--cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 999999998743 22211 1356678886 36778889999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHh--cCCcEEEEEcC---------CHHHHHHhcCEEEEEeCCEE
Q 002236 797 DPASRNNLWNVVKRA--KQGRAIILTTH---------SMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 797 Dp~sr~~l~~~L~~~--~~g~tIIltTH---------~meeae~l~drI~Im~~G~l 842 (949)
|+..+. ++. ..|.|+|++|| .++.+...+++|.++..|+.
T Consensus 234 D~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 998652 332 34899999999 66777888899999999964
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.89 E-value=3.5e-26 Score=263.59 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=160.9
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCe---ecCcc--
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTD-- 699 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~---di~~~-- 699 (949)
.++++++++|.|+. .+.||+++ |++.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++..-
T Consensus 130 ~~l~~~~v~~~~~t-----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE 203 (438)
T ss_dssp CTTTSCCCCSBCCC-----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH
T ss_pred CceEEeccceecCC-----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH
Confidence 46788999999963 25799999 999999999999999999999999999999999999999998 45321
Q ss_pred ----HHHhhccEEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 002236 700 ----MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 774 (949)
Q Consensus 700 ----~~~~r~~iG~~pQ~-~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL 774 (949)
....++.++|++|+ ..+++.+|+.+++.+.++..+... +.+. ...+ ....||+|| ||+
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-----------~~v~----~~ld-~l~~lS~g~-qrv 266 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-----------QHVL----LIMD-SLTRYAMAQ-REI 266 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-----------CEEE----EEEE-CHHHHHHHH-HHH
T ss_pred hhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-----------CCHH----HHHH-hHHHHHHHH-HHH
Confidence 23467889999995 567788899999988664321100 0010 1222 267899999 999
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----Cc-----EEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-----GR-----AIILTTHSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~-----g~-----tIIltTH~meeae~l~drI~Im~~G~l~~ 844 (949)
++| +++|++ |+||||..+..+++++.++.+ |+ ||+++|||++ +.+||++++|.+|+++.
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 999 899988 999999999999999988633 64 9999999999 67899999999999999
Q ss_pred EcCHHHHHHh
Q 002236 845 IGNPKELKAR 854 (949)
Q Consensus 845 ~Gs~~~Lk~~ 854 (949)
.|++.++...
T Consensus 336 ~~~~~~~~~~ 345 (438)
T 2dpy_A 336 SRRLAEAGHY 345 (438)
T ss_dssp CHHHHHTTCS
T ss_pred eCCHHHccCC
Confidence 9999887643
No 75
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=1.6e-27 Score=262.37 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=132.6
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhc
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 705 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~ 705 (949)
.|+++||++.|+ +.+|+++||+|++||+++|+||||||||||+++|+|++ +|+|.
T Consensus 101 ~i~~~~vs~~y~-------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF-------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------------- 155 (305)
T ss_dssp HHHHTTCCHHHH-------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---------------
T ss_pred eEEEEEEEEEcC-------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---------------
Confidence 366789999994 46999999999999999999999999999999999999 89883
Q ss_pred cEEEEcCCCCCCCCCCHHH-HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 706 SMGVCPQEDLLWETLTGRE-HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 706 ~iG~~pQ~~~L~~~lTv~E-~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+|++|++.+|.. |++| |+.+... .+ +.+.+.++.+ |.+ ..+ ..+|||||||| ||||+.+|
T Consensus 156 --~~v~q~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-L~~--gld--g~~LSgGqkQR---ARAll~~p 216 (305)
T 2v9p_A 156 --SFANHKSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-LRN--ALD--GYPVSIDRKHK---AAVQIKAP 216 (305)
T ss_dssp --CGGGTTSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-TTG--GGG--TCCEECCCSSC---CCCEECCC
T ss_pred --EEecCccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-hHc--cCC--ccCcCHHHHHH---HHHHhCCC
Confidence 456788777764 6776 6655311 11 1445566664 432 334 78999999999 99999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
+||| |++||+.+++.+.. .||+++.+ ..|||| +|++|++++.|++++++..|
T Consensus 217 ~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 217 PLLV----TSNIDVQAEDRYLY-------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CEEE----EESSCSTTCGGGGG-------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred CEEE----ECCCCHHHHHHHHH-------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 9999 99999999988863 18998875 579999 99999999999999995544
No 76
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.87 E-value=1.3e-24 Score=243.70 Aligned_cols=194 Identities=18% Similarity=0.287 Sum_probs=148.6
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc------
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 698 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~------ 698 (949)
.++++++++|.|+. .+.||+++ |+|.+||++||+||||||||||+++|+|+.+|+.|.+.+.|++...
T Consensus 44 ~~i~~~~l~~~~~t-----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA 117 (347)
T ss_dssp CSTTCCCCCSEECC-----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHT
T ss_pred CCeeecccceecCC-----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHH
Confidence 46788999999973 25799999 9999999999999999999999999999999999999999976321
Q ss_pred --cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcc--cccCCCCChhHHHHH
Q 002236 699 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA--DKQAGKYSGGMKRRL 774 (949)
Q Consensus 699 --~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~--~~~~~~LSGGqKqRL 774 (949)
.....++.+++++|.+. ...+++.-... ...+.+.+...+- +.. -..+.+||+|| ||+
T Consensus 118 ~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~---------~~~~ae~~~~~~~---~vl~~ld~~~~lS~g~-r~v 179 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDR-----PALERMKAAFT---------ATTIAEYFRDQGK---NVLLMMDSVTRYARAA-RDV 179 (347)
T ss_dssp TSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH---------HHHHHHHHHTTTC---EEEEEEETHHHHHHHH-HHH
T ss_pred hhhhhhhhceEEEEECCCC-----CHHHHHHHHHH---------HHHHHHHHHhccc---cHHHHHhhHHHHHHHH-HHH
Confidence 11224566888888642 33333321100 0011122111111 011 14678999999 899
Q ss_pred HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCc-----EEEEEcCCHHHHHHhcCEEEEEeCCEEEEEc
Q 002236 775 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIG 846 (949)
Q Consensus 775 slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~---~g~-----tIIltTH~meeae~l~drI~Im~~G~l~~~G 846 (949)
++| +++|++ |+|+||..+..++++++++. +|. ||+++||||+ +.+||++.+|.+|+++..|
T Consensus 180 ~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 180 GLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp HHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCH
T ss_pred HHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeC
Confidence 999 688888 99999999999999999864 377 9999999999 6789999999999999999
Q ss_pred CHHHHHH
Q 002236 847 NPKELKA 853 (949)
Q Consensus 847 s~~~Lk~ 853 (949)
++.++..
T Consensus 249 ~l~~~~~ 255 (347)
T 2obl_A 249 ELAEENH 255 (347)
T ss_dssp HHHTTTC
T ss_pred CHHHcCC
Confidence 9988753
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=1.4e-23 Score=236.02 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=142.9
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-----HH--hhccEEEEcCCCC-CCCCC
Q 002236 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DR--IYTSMGVCPQEDL-LWETL 720 (949)
Q Consensus 649 ~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-----~~--~r~~iG~~pQ~~~-L~~~l 720 (949)
+.+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... .. .+..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 5689999999999999999999999999999999999999999999986421 12 2457999999988 88999
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc--EEEEeCCCCCCCH
Q 002236 721 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDP 798 (949)
Q Consensus 721 Tv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~--vllLDEPTsGLDp 798 (949)
|++|++.+... ++.. ..+++.+|+. ...++.+.+|| |||+++|+|++.+|+ +++|| ||+|+|+
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~--~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRL--HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 292 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCS--SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCC--hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence 99999987532 2211 1356678886 36678889999 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHh--cCCcEEEEEcC---------CHHHHHHhcCEEEEEeCCEE
Q 002236 799 ASRNNLWNVVKRA--KQGRAIILTTH---------SMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 799 ~sr~~l~~~L~~~--~~g~tIIltTH---------~meeae~l~drI~Im~~G~l 842 (949)
..+. ++. ..|.|+|++|| .+..+..+++.|..+..|+-
T Consensus 293 ~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 293 LPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 8653 232 34899999999 46677788889999988864
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=2.9e-26 Score=240.38 Aligned_cols=177 Identities=8% Similarity=0.065 Sum_probs=124.3
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH--HHhhccEEEEcCCCCCCCCCCH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM--DRIYTSMGVCPQEDLLWETLTG 722 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~--~~~r~~iG~~pQ~~~L~~~lTv 722 (949)
...|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++.+.. ...++.++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999999 6 99999 88775321 2245789999998776654431
Q ss_pred -HHHHH---HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH-----HHHHcCCCcEEEEeCCC
Q 002236 723 -REHLL---FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV-----AISLIGNPKVVYMDEPS 793 (949)
Q Consensus 723 -~E~L~---~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLsl-----A~ALi~~P~vllLDEPT 793 (949)
.+++. +....+|.+ ...++++++...+. ..+ .+||||||||+++ |++++.+|++++|||||
T Consensus 86 ~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~---il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~ 155 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC---LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL 155 (218)
T ss_dssp TTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE---EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH
T ss_pred ccchhhhhhcccccCCCc----HHHHHHHHhCCCcE---EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH
Confidence 11111 112222222 23567777765432 233 6799999999999 89999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--------CCcEEEEEcCCHHHHHHhcCEEE
Q 002236 794 TGLDPASRNNLWNVVKRAK--------QGRAIILTTHSMEEAEALCDRLG 835 (949)
Q Consensus 794 sGLDp~sr~~l~~~L~~~~--------~g~tIIltTH~meeae~l~drI~ 835 (949)
+++|..+...+.+.+.+.+ ++...|+++|+++++...+++++
T Consensus 156 ~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 156 LTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 9999998888888886542 45678889999999988887764
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.86 E-value=3e-25 Score=245.41 Aligned_cols=182 Identities=12% Similarity=0.103 Sum_probs=140.2
Q ss_pred CCcEEEEeEEEEcCCCCCCCccceeeeeEEE-----------------------EeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 624 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLA-----------------------LPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 624 ~~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~-----------------------v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
+..|.++||+|.|+ ++++++++. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~--------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYL--------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh--------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45689999999994 466666654 89999999999999999999999999
Q ss_pred CCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc
Q 002236 681 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 760 (949)
Q Consensus 681 l~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~ 760 (949)
+++|+.|. +++++++|++.+++. |++||+.+.. .+|.+.....+.+.+.++.++ . +..+
T Consensus 113 ll~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~--~~~~ 171 (312)
T 3aez_A 113 LLARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-S--GSDY 171 (312)
T ss_dssp HHHTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-T--TCSC
T ss_pred hccccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-C--Cccc
Confidence 99998664 469999999999988 9999986532 235554445567888899888 3 3557
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHH-HHhcCEEEEEeC
Q 002236 761 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA-EALCDRLGIFVD 839 (949)
Q Consensus 761 ~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meea-e~l~drI~Im~~ 839 (949)
..+.+|||||+||+++|+|++.+|+|||||||++.+|+.. ..+++. -+ ..|+++|+.+.+ +++.+|...+.+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~-----~D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDL-----FD-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGG-----CS-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHHh-----cC-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999998621 111111 13 346666777653 445666655555
Q ss_pred CE
Q 002236 840 GS 841 (949)
Q Consensus 840 G~ 841 (949)
|+
T Consensus 245 ~~ 246 (312)
T 3aez_A 245 TA 246 (312)
T ss_dssp TG
T ss_pred cc
Confidence 54
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.86 E-value=5.1e-25 Score=259.45 Aligned_cols=179 Identities=20% Similarity=0.210 Sum_probs=132.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEE-EEeCCcEEEEECCCCCcHHHHHHH--HhCCCCCCcceEEEcCeecCccHHHh
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISM--MIGITRTTSGTAYVQGLDIRTDMDRI 703 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl-~v~~Gei~gLLG~NGAGKTTLlk~--L~Gl~~ptsG~I~i~G~di~~~~~~~ 703 (949)
++.+++.+..+ ...+|+++++ +|++||+++|+||||||||||+++ ++|+.+|++|.|+++|.+......+.
T Consensus 13 ~~~~~~~~~~~------g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~ 86 (525)
T 1tf7_A 13 SEHQAIAKMRT------MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKN 86 (525)
T ss_dssp -CCSSCCEECC------CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHH
T ss_pred ccccccccccC------CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHH
Confidence 44455655443 3679999999 999999999999999999999999 78999999999999999854444455
Q ss_pred hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 002236 704 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 783 (949)
Q Consensus 704 r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~ 783 (949)
++.+||++|+....+. +.+ ..... . +...++++.+++. +..++.+.+|||| +
T Consensus 87 ~~~~g~~~q~~~~~~~------l~~-~~~~~--~----~~~~~~l~~~~l~--~~~~~~~~~LS~g-------------~ 138 (525)
T 1tf7_A 87 ARSFGWDLAKLVDEGK------LFI-LDASP--D----PEGQEVVGGFDLS--ALIERINYAIQKY-------------R 138 (525)
T ss_dssp HGGGTCCHHHHHHTTS------EEE-EECCC--C----SSCCSCCSSHHHH--HHHHHHHHHHHHH-------------T
T ss_pred HHHcCCChHHhhccCc------EEE-EecCc--c----cchhhhhcccCHH--HHHHHHHHHHHHc-------------C
Confidence 6789999997542211 100 00000 0 0011223333332 2445555666665 5
Q ss_pred CcEEEEeCCCC-----CCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHH---------HHHhcCEEEEEeC
Q 002236 784 PKVVYMDEPST-----GLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE---------AEALCDRLGIFVD 839 (949)
Q Consensus 784 P~vllLDEPTs-----GLDp~sr~~l~~~L~~~~-~g~tIIltTH~mee---------ae~l~drI~Im~~ 839 (949)
|++|+|||||+ ++|+..++.+++++++++ +|.|||++||++++ ++.+||||++|++
T Consensus 139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 88999999998 569999999999999874 59999999999998 4777999999998
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=2e-21 Score=218.60 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=79.2
Q ss_pred cccCC-CCChhHHHHHHHHHHHc---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHH
Q 002236 760 DKQAG-KYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 829 (949)
Q Consensus 760 ~~~~~-~LSGGqKqRLslA~ALi---------~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~ 829 (949)
+++++ .||||||||+++|++|+ ++|+|+||||||++||+..++.+++.|.+.. .|+|++|| +++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT---
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc---
Confidence 55677 79999999999999999 9999999999999999999999999998865 79999999 455
Q ss_pred hcCEEEEEeCCEEEEEcCHHHH
Q 002236 830 LCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 830 l~drI~Im~~G~l~~~Gs~~~L 851 (949)
.||++++|++|++++.|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999999876
No 82
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=5.2e-24 Score=230.86 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=101.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~ 739 (949)
.+||+||||||||||+|+|+|+.+|++|+|.++|.++... ..++.+||++|++.+++.+||.|++.|+....+. .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~---~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE---N 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCT---T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccH---H
Confidence 4799999999999999999999999999999999988432 3457899999999999999999999887654431 2
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 002236 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 819 (949)
Q Consensus 740 ~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIl 819 (949)
..+.+.+.++. .+.++.+.+||||||||+++|||++. +++||||+.||||.. .++++++++..+||+
T Consensus 79 ~~~~i~~~~~~------~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~~~vI~ 145 (270)
T 3sop_A 79 CWEPIEKYINE------QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKVVNIIP 145 (270)
T ss_dssp CSHHHHHHHHH------HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH------HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhcCcEEE
Confidence 22334444441 36678889999999999999999885 999999999999987 344444433378888
Q ss_pred EcCCHH
Q 002236 820 TTHSME 825 (949)
Q Consensus 820 tTH~me 825 (949)
+.|..+
T Consensus 146 Vi~K~D 151 (270)
T 3sop_A 146 VIAKAD 151 (270)
T ss_dssp EETTGG
T ss_pred EEeccc
Confidence 888765
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.85 E-value=2.3e-22 Score=219.08 Aligned_cols=183 Identities=16% Similarity=0.114 Sum_probs=129.8
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG-~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
..+|+++++.+++||+++|+|+||||||||+++|+|...|++| .|.+.+.+.. ..+++++++...|...+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~~~----~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRVRL----RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTCCG----GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCCCh----hhc
Confidence 4589999999999999999999999999999999999999988 7765544432 23444455554444321 233
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHHcCCCcEEEEeCCCC---C---C
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISLIGNPKVVYMDEPST---G---L 796 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq-KqRLslA~ALi~~P~vllLDEPTs---G---L 796 (949)
+++... .+ +.++.++.++++++..++ ..+..+.++|.++ +||+. |+++..+|++|++||||+ + +
T Consensus 96 ~~l~~~-~~---~~~~~~~~~~~~l~~~~l----~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~ 166 (296)
T 1cr0_A 96 DSLKRE-II---ENGKFDQWFDELFGNDTF----HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGES 166 (296)
T ss_dssp HHHHHH-HH---HHTHHHHHHHHHHSSSCE----EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---------
T ss_pred cccccC-CC---CHHHHHHHHHHHhccCCE----EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCC
Confidence 444432 11 223344555555554444 2333456789998 66666 999999999999999999 5 5
Q ss_pred CH-HHHHHHHHHHHHh-cC-CcEEEEEcCCH--H--------------------HHHHhcCEEEEEeCCEE
Q 002236 797 DP-ASRNNLWNVVKRA-KQ-GRAIILTTHSM--E--------------------EAEALCDRLGIFVDGSL 842 (949)
Q Consensus 797 Dp-~sr~~l~~~L~~~-~~-g~tIIltTH~m--e--------------------eae~l~drI~Im~~G~l 842 (949)
|+ ...+.+++.|+++ ++ |.|||++||+. + +++.+||+|++|.+|+.
T Consensus 167 d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 167 DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 66 6778899988885 44 89999999995 6 78899999999999975
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.85 E-value=1.5e-22 Score=253.76 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=126.6
Q ss_pred CcEEEEe-----EEEEcCCCCCCCccceeeeeEEEEeC-------CcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc
Q 002236 625 HAIISDN-----LRKIYPGRDGNPEKVAVNGLSLALPS-------GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 692 (949)
Q Consensus 625 ~~I~v~n-----L~K~Y~~~~~~~~~~al~~lSl~v~~-------Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~ 692 (949)
.+|+++| |++.|++ ++.+++|++|++++ |++++|+|||||||||++|+| |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-----~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-----DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C-----CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred ceEEEEeccccEEEEEecC-----CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 4699999 9999942 25799999999987 999999999999999999999 99863
Q ss_pred CeecCccHHHhhccEE-EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 002236 693 GLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 771 (949)
Q Consensus 693 G~di~~~~~~~r~~iG-~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK 771 (949)
..++| ||||+.. .+|+.|++. ..+|+.+ ...+..+++|+||+
T Consensus 815 -----------~aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig~~d--~~~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 -----------MAQMGCYVPAEVC---RLTPIDRVF---------------------TRLGASD--RIMSGESTFFVELS 857 (1022)
T ss_dssp -----------HHTTTCCEESSEE---EECCCSBEE---------------------EECC-----------CHHHHHHH
T ss_pred -----------HhheeEEeccCcC---CCCHHHHHH---------------------HHcCCHH--HHhhchhhhHHHHH
Confidence 24567 9999863 445555431 1233331 33445578899888
Q ss_pred HHHHHHHHHcCCCcEEEEeCCCCCCCHHHH-HHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEEEEeCCEEE--EEc
Q 002236 772 RRLSVAISLIGNPKVVYMDEPSTGLDPASR-NNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQ--CIG 846 (949)
Q Consensus 772 qRLslA~ALi~~P~vllLDEPTsGLDp~sr-~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~Im~~G~l~--~~G 846 (949)
+ +++|++++.+|+++|||||++|+|+... ..+|++|+.+ ++ |.++|++||++++++.+||++.++ +|++. ..|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 6 9999999999999999999999999985 5589999886 44 899999999999999999999887 58888 456
Q ss_pred CHHH
Q 002236 847 NPKE 850 (949)
Q Consensus 847 s~~~ 850 (949)
.+++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 6554
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=5.6e-23 Score=228.86 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=111.4
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
+++++|+.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.+++++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g-------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG-------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC--------------
Confidence 8999999999999999999999999999999999999999999999975211 1112334444430
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 806 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~ 806 (949)
|||+||++||+||..+|++++|||||+ .++++
T Consensus 225 -----------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~ 256 (330)
T 2pt7_A 225 -----------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYD 256 (330)
T ss_dssp -----------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHH
T ss_pred -----------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHH
Confidence 899999999999999999999999998 24677
Q ss_pred HHHHhcCCc-EEEEEcCCHHHHHHhcCEEEEEeCCEE
Q 002236 807 VVKRAKQGR-AIILTTHSMEEAEALCDRLGIFVDGSL 842 (949)
Q Consensus 807 ~L~~~~~g~-tIIltTH~meeae~l~drI~Im~~G~l 842 (949)
.|+.+..|+ |+|+|||+++ +...|||+++|.+|+.
T Consensus 257 ~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 257 FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 887776665 7999999998 7788999999988853
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.84 E-value=1.9e-22 Score=214.38 Aligned_cols=176 Identities=14% Similarity=0.168 Sum_probs=120.2
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
++.+|+|+||++++|+++||+|||||||||++++|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCHh
Confidence 467999999999999999999999999999999999976 554443 3567899999995 77889999
Q ss_pred HHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHH
Q 002236 724 EHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 801 (949)
Q Consensus 724 E~L~~~~~l~g~~~~--~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr 801 (949)
|++.+.....+.... ...+.+.+.|+.+ . ...++++.+||+||+||+++ ++++.+|+++|||||....|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~--~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--V--EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--H--TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--H--CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 999876544333221 1233445555554 2 24577889999999999988 5889999999999998888764
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCHHHH-HHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 802 NNLWNVVKRAKQGRAIILTTHSMEEA-EALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 802 ~~l~~~L~~~~~g~tIIltTH~meea-e~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
+++ . .+.+|+++||+...+ ..+++++ .+|+ +.+++++++
T Consensus 150 --l~~----~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 150 --IRD----M-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp --HHT----T-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred --HHH----h-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 222 1 378999999985444 5555545 6674 677777654
No 87
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.83 E-value=1.8e-22 Score=212.26 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=113.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh--CCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhh
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMI--GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 731 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~--Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~ 731 (949)
.|++||+++|+||||||||||+++|+ |+.++.+|.+++.+.+......+..+.+|+.+|+....+.+++.++......
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 79999999999999999999999999 7767888889998876554444455678888887555555555444322110
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCC-----HHHHHHHHH
Q 002236 732 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD-----PASRNNLWN 806 (949)
Q Consensus 732 l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLD-----p~sr~~l~~ 806 (949)
.. .... .......+.++.++...+..-..+|++++|||||+++| +..++.+++
T Consensus 106 ~~-------~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~ 163 (251)
T 2ehv_A 106 LP-------SEEK---------------FVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLK 163 (251)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHH
T ss_pred cc-------cccc---------------eeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHH
Confidence 00 0000 00111223444444444444568999999999999998 777888999
Q ss_pred HHHHhc-CCcEEEEEcCCHHHH---------HHhc-CEEEEEeC
Q 002236 807 VVKRAK-QGRAIILTTHSMEEA---------EALC-DRLGIFVD 839 (949)
Q Consensus 807 ~L~~~~-~g~tIIltTH~meea---------e~l~-drI~Im~~ 839 (949)
+++.++ +|+|||++||+++++ +.+| |++++|++
T Consensus 164 l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 164 LNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 998864 599999999999999 6888 99999964
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=8.9e-21 Score=222.97 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=74.0
Q ss_pred ccCCCC-ChhHHHHHHHHHHHcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 761 KQAGKY-SGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 761 ~~~~~L-SGGqKqRLslA~ALi~~P--~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im 837 (949)
+++.+| |||||||++||+||+.+| ++|||||||+|||+.++..+++.|+++++|+|||++||+++.+. .|||+++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456778 999999999999999999 99999999999999999999999998766999999999999886 59999999
Q ss_pred eCCE
Q 002236 838 VDGS 841 (949)
Q Consensus 838 ~~G~ 841 (949)
.+|.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 7763
No 89
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=3.5e-20 Score=206.68 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=71.6
Q ss_pred ccccCCCCChhHHH------HHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhc
Q 002236 759 ADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALC 831 (949)
Q Consensus 759 ~~~~~~~LSGGqKq------RLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~ 831 (949)
.++++.+||||||| ||++|+||+++|+++||||||+||||..++.+++.|++. ++|++||++||+. ++...|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHHHhC
Confidence 46788999999999 678889999999999999999999999999999999985 5688999999995 467789
Q ss_pred CEEEEEe
Q 002236 832 DRLGIFV 838 (949)
Q Consensus 832 drI~Im~ 838 (949)
||+++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=5.5e-21 Score=236.35 Aligned_cols=161 Identities=23% Similarity=0.275 Sum_probs=130.5
Q ss_pred HHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch---------hHHH
Q 002236 672 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP---------ALTQ 742 (949)
Q Consensus 672 TTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~---------~~~~ 742 (949)
+|...|..+.++|.+|+|+++|++|.. +..+|+.|++.+...+. ++.. ...+
T Consensus 382 ~~C~~C~g~rl~~~~~~V~i~G~~i~~------------------~~~~~v~~~l~~~~~~~-l~~~~~~~~~~~~~~~~ 442 (916)
T 3pih_A 382 RTCSVCGGRRLNREALSVKINGLNIHE------------------FTELSISEELEFLKNLN-LTEREREIVGELLKEIE 442 (916)
T ss_dssp EECTTTCSCCBCTTGGGEEETTEEHHH------------------HHHSBHHHHHHHHHSCC-CCTTTTTTHHHHHHHHH
T ss_pred ccchhcccccCChHhcCcEECCccHHH------------------hhhCCHHHHHHHHHhcc-CcHHHHHHHHhhHHHHH
Confidence 345566778899999999999998742 22356777776644331 1110 1113
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 002236 743 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIIL 819 (949)
Q Consensus 743 ~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~--vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIl 819 (949)
+..+.|+.+||.+ ...++++.+|||||||||+||+||+.+|+ ++||||||+||||..++.++++|++++ +|.|||+
T Consensus 443 ~~~~~L~~vgL~~-l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 443 KRLEFLVDVGLEY-LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHHHHHTTTCTT-CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHHHHHcCCcc-ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3456788899963 23689999999999999999999999887 999999999999999999999999975 5999999
Q ss_pred EcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHH
Q 002236 820 TTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 853 (949)
Q Consensus 820 tTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~ 853 (949)
+|||++++.. ||||++| ++|++++.|+++++.+
T Consensus 522 VtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 522 VEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp ECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999876 9999999 8999999999999864
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=5.2e-20 Score=226.65 Aligned_cols=150 Identities=24% Similarity=0.341 Sum_probs=126.0
Q ss_pred CCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHc
Q 002236 682 TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSV 751 (949)
Q Consensus 682 ~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~----------~~~~~~v~~~L~~l 751 (949)
++|....|.|+|++|.. +..|||.|.+.|+..+. ++. +++.+++ +.|+.+
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~-l~~~~~~i~~~~~~ei~~Rl-~~L~~v 491 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLE-LTEKEAQIARLILREIRDRL-GFLQNV 491 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCC-CCHHHHHHSHHHHHHHHHHH-HHHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH-HHhhhC
Confidence 56778888888887642 23489999999977663 444 2445555 458999
Q ss_pred CCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--cEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHH
Q 002236 752 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAE 828 (949)
Q Consensus 752 ~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P--~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae 828 (949)
||.. -..++.+.+|||||||||.||++|..+| +++||||||+||||..++.++++|++++ .|.|||+++|++++++
T Consensus 492 GL~~-l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~ 570 (972)
T 2r6f_A 492 GLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML 570 (972)
T ss_dssp TCTT-SBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH
T ss_pred CCCc-cccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 9962 1369999999999999999999999985 9999999999999999999999999975 5999999999999986
Q ss_pred HhcCEEEEE------eCCEEEEEcCHHHHHH
Q 002236 829 ALCDRLGIF------VDGSLQCIGNPKELKA 853 (949)
Q Consensus 829 ~l~drI~Im------~~G~l~~~Gs~~~Lk~ 853 (949)
.||||++| ++|++++.|+++++.+
T Consensus 571 -~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 571 -AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp -SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred -hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 59999999 7999999999988753
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=2.2e-20 Score=220.03 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=121.9
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhh
Q 002236 652 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 731 (949)
Q Consensus 652 Sl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~ 731 (949)
+..+++|++++|+|+||||||||+++++|+.+|+ |+ +.+.+.+|+.. .++.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----------------~vi~~~~ee~~----~~l~~~~----~ 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----------------RAILFAYEESR----AQLLRNA----Y 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----------------CEEEEESSSCH----HHHHHHH----H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----------------CEEEEEEeCCH----HHHHHHH----H
Confidence 4499999999999999999999999999998885 53 11345555431 0122221 1
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH-----HHHHHHH
Q 002236 732 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA-----SRNNLWN 806 (949)
Q Consensus 732 l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~-----sr~~l~~ 806 (949)
..++. +++ +...|+. ...+..+.+|||||+||+.+|+++..+|++|++| ||+|||+. .++.+++
T Consensus 330 ~~g~~-------~~~-~~~~g~~--~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 330 SWGMD-------FEE-MERQNLL--KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp TTSCC-------HHH-HHHTTSE--EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred HcCCC-------HHH-HHhCCCE--EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 11222 112 2345554 3678889999999999999999999999999999 99999999 9999999
Q ss_pred HHHHhc-CCcEEEEEcCCH----------HHHHHhcCEEEEEeCCE
Q 002236 807 VVKRAK-QGRAIILTTHSM----------EEAEALCDRLGIFVDGS 841 (949)
Q Consensus 807 ~L~~~~-~g~tIIltTH~m----------eeae~l~drI~Im~~G~ 841 (949)
+++.++ +|.|||++||++ ++++.+||+|++|.+|+
T Consensus 399 ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 998864 699999999999 88899999999999987
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=8.3e-21 Score=235.63 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=120.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH--------hCCCCCCcceEEEcCeecC
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM--------IGITRTTSGTAYVQGLDIR 697 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L--------~Gl~~ptsG~I~i~G~di~ 697 (949)
.+.+++...-+-... ...+.+++|++|++++|++++|+|||||||||++|++ .|...|.++..
T Consensus 631 ~i~i~~~rHP~le~~-~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQ-DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC---CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred ceEeecCccchhhhc-CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 355655543332111 1135789999999999999999999999999999999 56555543221
Q ss_pred ccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 002236 698 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 777 (949)
Q Consensus 698 ~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA 777 (949)
++.+ + +++..+|+. +.....+|+||+++..+|
T Consensus 702 ---------~~~~---d-------------------------------~i~~~ig~~-----d~l~~~lStf~~e~~~~a 733 (934)
T 3thx_A 702 ---------VSIV---D-------------------------------CILARVGAG-----DSQLKGVSTFMAEMLETA 733 (934)
T ss_dssp ---------EECC---S-------------------------------EEEEECC--------------CHHHHHHHHHH
T ss_pred ---------chHH---H-------------------------------HHHHhcCch-----hhHHHhHhhhHHHHHHHH
Confidence 1110 0 112223332 334456888888888888
Q ss_pred HHH--cCCCcEEEEeCCCCCCCHHHHHHH-HHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHH
Q 002236 778 ISL--IGNPKVVYMDEPSTGLDPASRNNL-WNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 778 ~AL--i~~P~vllLDEPTsGLDp~sr~~l-~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~L 851 (949)
+++ +.+|+++||||||+|+||..+..+ |.+++.+ + .|.++|++||+++.+ .+||++..|.+|++.+.++.+++
T Consensus 734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 888 999999999999999999999888 7777775 3 489999999997665 68999999999999998887654
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=3.3e-19 Score=218.95 Aligned_cols=167 Identities=24% Similarity=0.276 Sum_probs=131.6
Q ss_pred CCCCcHHHHHHHHhCC---------CCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC-
Q 002236 666 PNGAGKTTFISMMIGI---------TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL- 735 (949)
Q Consensus 666 ~NGAGKTTLlk~L~Gl---------~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~- 735 (949)
.+..||+++.+.+... +.|.+|+|.++|++|..-. .|++.|.+.|...+...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~------------------~~~v~e~~~~~~~~~~~~ 331 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELS------------------RLPLARVSELLRPYAEER 331 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHH------------------HSBHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHh------------------hcCHHHHHHHHHhhhhhh
Confidence 3556899999888763 5678999999999885411 12333333333332110
Q ss_pred ----------C----------chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--cEEEEeCCC
Q 002236 736 ----------K----------GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEPS 793 (949)
Q Consensus 736 ----------~----------~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P--~vllLDEPT 793 (949)
. .+++.++++ .|+.+||.+ -..++.+.+|||||||||.||+||..+| +++||||||
T Consensus 332 ~~~~~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~-l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT 409 (842)
T 2vf7_A 332 EPGHAERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGY-LGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPS 409 (842)
T ss_dssp SSCSTTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTT-SBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTT
T ss_pred hhcccchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCc-CCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcc
Confidence 0 234566666 688999963 1369999999999999999999999999 599999999
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHH
Q 002236 794 TGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 853 (949)
Q Consensus 794 sGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~ 853 (949)
+||||..++.++++|++++ +|.|||+++|++++++ .||||++| ++|+++..|+++++.+
T Consensus 410 ~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 410 AGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp TTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999999999999999975 5999999999999775 69999999 7999999999988643
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=4.1e-20 Score=199.40 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=102.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt-sG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
.+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~---~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF---KHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC---CCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec---CCcceeeeHH-----------
Confidence 4899999 9999999999999999999999999999998 999999997753210 1112222221
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
.+++.. .+| |+++|+||..+|+++++|||| |+.+.+.
T Consensus 79 -------------------------~~gl~~--------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~- 115 (261)
T 2eyu_A 79 -------------------------EVGEDT--------KSF------ADALRAALREDPDVIFVGEMR---DLETVET- 115 (261)
T ss_dssp -------------------------EBTTTB--------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHH-
T ss_pred -------------------------HhCCCH--------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHH-
Confidence 244421 122 799999999999999999999 9988654
Q ss_pred HHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeC
Q 002236 805 WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 839 (949)
Q Consensus 805 ~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~ 839 (949)
+++....|++|++|||+++ +...|||++.|..
T Consensus 116 --~l~~~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 116 --ALRAAETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp --HHHHHHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred --HHHHHccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 4444567999999999987 6678999988754
No 96
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=8.4e-19 Score=216.64 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=112.5
Q ss_pred CCCCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC--C
Q 002236 717 WETLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--P 784 (949)
Q Consensus 717 ~~~lTv~E~L~~~~~l~g~~~----------~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~--P 784 (949)
+..|||.|.+.|+..+ +++. +++.+++ +.|+.+||.. -..++.+.+|||||||||.||+||..+ |
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~-l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEY-LSLSRAAATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGG-SCTTCBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCc-cccCCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 3457899999885544 3444 3445555 4588899952 126999999999999999999999999 5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEEEE------eCCEEEEEcCHHHHHH
Q 002236 785 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 853 (949)
Q Consensus 785 ~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~Im------~~G~l~~~Gs~~~Lk~ 853 (949)
+++||||||+||||..++.++++|++++ .|.|||+++|++++++ .||||++| ++|+++..|+++++.+
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 9999999999999999999999999875 6999999999999986 69999999 7999999999998865
No 97
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=8.2e-21 Score=208.74 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=89.2
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC-CCCCcceEEEcCeecCccHHHhhccEE
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMG 708 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl-~~ptsG~I~i~G~di~~~~~~~r~~iG 708 (949)
+||+|.|++ +.++++++|+| +|+|+||||||||+++|.|. ..|++| +.++|.++.... . ++.++
T Consensus 2 ~~l~~~~~~------~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~-~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVHR------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-Q-IEAST 66 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CE
T ss_pred CCCcceECC------EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-e-EeeEE
Confidence 578999973 67999999999 99999999999999999998 899999 988888775422 1 35689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEE
Q 002236 709 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 788 (949)
Q Consensus 709 ~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vll 788 (949)
+++|.+.+...+|+.|+..+...... .+..+..++. ++ +..+++++++|||||||+.+|+|++ +++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~-l~-------~~~~~~~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISY-ID-------EQFERYLHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EEEC---CCEEEEEEEEC-------------CTTHHHH-HH-------HHHHHHHHHHTSSCCTTCCCCCCCE----EEE
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHH-HH-------HHHHHHHHHhCHHhhhhhhhhhhhh----eee
Confidence 99999888888899888776433211 0000111111 11 2346788899999999999998886 999
Q ss_pred EeCCCC-CCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHH
Q 002236 789 MDEPST-GLDPASRNNLWNVVKRAK--QGRAIILTTHSMEE 826 (949)
Q Consensus 789 LDEPTs-GLDp~sr~~l~~~L~~~~--~g~tIIltTH~mee 826 (949)
+||||+ |||+..+ ++++++. .+.++|+++||+..
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999998 5999874 4555543 37899999999853
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=2.2e-18 Score=170.81 Aligned_cols=83 Identities=28% Similarity=0.407 Sum_probs=75.0
Q ss_pred ccccCCCCChhHHHHHHHH------HHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCCHHHHHHhc
Q 002236 759 ADKQAGKYSGGMKRRLSVA------ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALC 831 (949)
Q Consensus 759 ~~~~~~~LSGGqKqRLslA------~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~meeae~l~ 831 (949)
.++++.+||||||||+++| +||+++|++++|||||+|||+.+++.+++.|++. ++|+|||++||++ ++..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 5778999999999999886 8999999999999999999999999999999986 4589999999999 567899
Q ss_pred CEEEEE--eCCEE
Q 002236 832 DRLGIF--VDGSL 842 (949)
Q Consensus 832 drI~Im--~~G~l 842 (949)
||+++| .+|.-
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.75 E-value=2.3e-19 Score=219.05 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=113.6
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
+.+++|+||+ |++++|+|||||||||++|+|+|+.. ++.|.+. . ..+..+|+++| +++.+++.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----SSEEEECCCSE---EEEECCC-
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----hhccceeeHHH---hhccCCHH
Confidence 5799999999 99999999999999999999999874 7777642 1 12356888877 56666666
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH--cCCCcEEEEeCC---CCCCCH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVVYMDEP---STGLDP 798 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL--i~~P~vllLDEP---TsGLDp 798 (949)
|++.. .+|+||++++.+|+++ +.+|+++||||| |++||+
T Consensus 630 d~l~~------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 630 DDLAG------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp -----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred HHHHh------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 65421 3689999999999999 999999999999 999999
Q ss_pred HHH-HHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 799 ASR-NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 799 ~sr-~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
.++ ..+.+.|.+ .|.++|++||++++++ +| .-.+.++++.+...
T Consensus 674 ~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 674 VAIATAVAEALHE--RRAYTLFATHYFELTA-LG--LPRLKNLHVAAREE 718 (765)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHh--CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEEEc
Confidence 986 467777765 5899999999998865 56 33456666666543
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=5.9e-18 Score=194.40 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=68.8
Q ss_pred ccCCCCChhHHHHHHHHHHHc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhcCEEE
Q 002236 761 KQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLG 835 (949)
Q Consensus 761 ~~~~~LSGGqKqRLslA~ALi----~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH~meeae~l~drI~ 835 (949)
+++..||||||||++||++|+ ++|+++||||||++||+..++.+++.|++.. +|.++|+|||+.+. ...|||++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEE
Confidence 345569999999999999999 7899999999999999999999999999864 58899999999665 45799999
Q ss_pred EEe
Q 002236 836 IFV 838 (949)
Q Consensus 836 Im~ 838 (949)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=6.3e-20 Score=190.41 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=95.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-------CcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRT-------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-------tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
.|++||+++|+||||||||||+++|+|+..+ ..|.+++++.+... .+++++++|...+++. |+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence 6999999999999999999999999996655 44477777764311 1224444554444333 444443
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHHc-------CCCcEEEEeCCCCCCCH
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISLI-------GNPKVVYMDEPSTGLDP 798 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq-KqRLslA~ALi-------~~P~vllLDEPTsGLDp 798 (949)
.+.. .+++++ ++.+..+.+++ .+|++++|||||+++|+
T Consensus 95 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 95 YVAR----------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp EEEE----------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred EEEe----------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 3211 112222 22233333333 49999999999999998
Q ss_pred H-------HH-----HHHHHHHHHh-c-CCcEEEEEcCCHHH----HHHhcCEEEEEeCCE
Q 002236 799 A-------SR-----NNLWNVVKRA-K-QGRAIILTTHSMEE----AEALCDRLGIFVDGS 841 (949)
Q Consensus 799 ~-------sr-----~~l~~~L~~~-~-~g~tIIltTH~mee----ae~l~drI~Im~~G~ 841 (949)
. .+ +.+++.|.+. + .|.|||++||.+++ ++.+||++++|++|+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3 22 3566666654 3 49999999997666 999999999998763
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.74 E-value=2.5e-19 Score=221.84 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=105.5
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
++.+++|++|++++|++++|+|||||||||+||+++++..... .-+++|+...-...
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-------------------~g~~vpa~~~~i~~---- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-------------------IGSYVPAEEATIGI---- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-------------------HTCCBSSSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-------------------cCccccchhhhhhH----
Confidence 3579999999999999999999999999999999976421100 00122221110000
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 803 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~ 803 (949)
+++++..+++. +...+..+++|+||+|++.++++ +.+|+++||||||+|+||..+..
T Consensus 716 --------------------~d~i~~~ig~~--d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 716 --------------------VDGIFTRMGAA--DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp --------------------CSEEEEEC------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred --------------------HHHHHHhCChH--HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 01122233333 23455678899999999999999 89999999999999999999988
Q ss_pred HH-HHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEE-EeCCEEEE
Q 002236 804 LW-NVVKRA-K-QGRAIILTTHSMEEAEALCDRLGI-FVDGSLQC 844 (949)
Q Consensus 804 l~-~~L~~~-~-~g~tIIltTH~meeae~l~drI~I-m~~G~l~~ 844 (949)
+. .+++.+ + .|.+||++||+++.+ .+||+..- +.++++.+
T Consensus 773 i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 773 IAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence 86 677765 4 599999999999876 46776532 45566555
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.73 E-value=3.2e-20 Score=222.29 Aligned_cols=190 Identities=15% Similarity=0.243 Sum_probs=124.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeee----------EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCe
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGL----------SLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGL 694 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~l----------Sl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-tsG~I~i~G~ 694 (949)
.+.++||++.|+.+ .+.+++.+ +++++. +||+|+||||||||+++|+|+..| ++|.|+++|.
T Consensus 10 ~i~~~~l~~~~~~~----~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~ 82 (608)
T 3szr_A 10 SVAENNLCSQYEEK----VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPL 82 (608)
T ss_dssp ----------CHHH----HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCE
T ss_pred hhhhhhhhHHHHHH----HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCE
Confidence 47788999999631 12344433 366665 999999999999999999999989 8999999999
Q ss_pred ecCc----cHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 695 DIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 695 di~~----~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
++.. ....+++.+||++|+..+++.+||+|++.+.....+... -++.
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s---------------- 133 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGIS---------------- 133 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCC----------------
T ss_pred EEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccc----------------
Confidence 9631 124567899999999999999999999987543221100 0111
Q ss_pred HHHHHHHHHHcCCCcEEEEeCC------CCCCCHHHHHHHHHHHHHh-cC--CcEEEEEcCCHHH--------HHHh---
Q 002236 771 KRRLSVAISLIGNPKVVYMDEP------STGLDPASRNNLWNVVKRA-KQ--GRAIILTTHSMEE--------AEAL--- 830 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEP------TsGLDp~sr~~l~~~L~~~-~~--g~tIIltTH~mee--------ae~l--- 830 (949)
++++.++++..+.|+++++||| |+|||+..++.++++++++ ++ +.+++++||+++. +..+
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 1223334445568999999999 9999999999999999984 33 6788999999762 2333
Q ss_pred -cCEEEEEeCCEEEEEcCHHHH
Q 002236 831 -CDRLGIFVDGSLQCIGNPKEL 851 (949)
Q Consensus 831 -~drI~Im~~G~l~~~Gs~~~L 851 (949)
+..|+|+.++.++..|+.+++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCC
T ss_pred CCceEEEecchhhcCcccHHHH
Confidence 356899999998888876544
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=1.1e-20 Score=194.90 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=118.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCC--CCCCHHHHHHHHhhh
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW--ETLTGREHLLFYGRL 732 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~--~~lTv~E~L~~~~~l 732 (949)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|+++++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999998865 489999998877 5689999876532
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH----HHHHHHHHHcCCCcEEEEeCCCCC-------CCHHHH
Q 002236 733 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK----RRLSVAISLIGNPKVVYMDEPSTG-------LDPASR 801 (949)
Q Consensus 733 ~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK----qRLslA~ALi~~P~vllLDEPTsG-------LDp~sr 801 (949)
+.+.....+++.+.++.+++.+ ..++++.++|+||+ ||+++|++++.+|+++++||||++ ||+..+
T Consensus 60 -~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 60 -DHPDAFDLALYLEHAQALLRGL--PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp -TSGGGBCHHHHHHHHHHHHTTC--CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred -CChhhhhHHHHHHHHHHHHcCC--CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 2222333456778888888863 56778899999974 688999999999999999999999 999999
Q ss_pred HHHHHHHHHh--cCCcEEEEEcCCHH
Q 002236 802 NNLWNVVKRA--KQGRAIILTTHSME 825 (949)
Q Consensus 802 ~~l~~~L~~~--~~g~tIIltTH~me 825 (949)
..+++.+++. .+|+|++.++|++.
T Consensus 137 ~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 137 ERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999774 46999999999854
No 105
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.72 E-value=1.1e-19 Score=191.23 Aligned_cols=146 Identities=17% Similarity=0.226 Sum_probs=108.2
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCH----HHHH
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG----REHL 726 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p--tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv----~E~L 726 (949)
-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.|.+.+. ..++.++|+||++.+|+.+++ .|++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 45789999999999999999999999999986 78999998876543 235679999998777666665 4544
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 806 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~ 806 (949)
.+++..+|.+. +.++ .++..++++||| ||+.+++.+++
T Consensus 88 ~~~~~~yg~~~----~~v~---------------------------------~~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 88 EVFGNYYGTSR----EAIE---------------------------------QVLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp EETTEEEEEEH----HHHH---------------------------------HHHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred HHHhccCCCCH----HHHH---------------------------------HHHhcCCeEEEE-----ECHHHHHHHHH
Confidence 43333332211 1122 233346999999 99999999999
Q ss_pred HHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 807 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 807 ~L~~~~~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
.+. ++.+|+++||+++++++ |+ +.+| .+++++++.++
T Consensus 126 ~l~---~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 126 KMP---HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HCT---TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred Hcc---CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 876 68999999999999886 43 6777 68888887764
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.72 E-value=7.4e-18 Score=174.42 Aligned_cols=169 Identities=16% Similarity=0.071 Sum_probs=119.0
Q ss_pred cceeeeeEE-EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHHhhccEEEEcCCCCCCCCCCH
Q 002236 645 KVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDLLWETLTG 722 (949)
Q Consensus 645 ~~al~~lSl-~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~~r~~iG~~pQ~~~L~~~lTv 722 (949)
..+|+++.. .+++|++++|+||||||||||++.|+|...+++|.+.+.+.+.... .......+|+.+|..... .+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 86 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI- 86 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE-
Confidence 568999998 8999999999999999999999999999888888888776554321 111112344433321100 000
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc--EEEEeCCCCCC--CH
Q 002236 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGL--DP 798 (949)
Q Consensus 723 ~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~--vllLDEPTsGL--Dp 798 (949)
.+.... +..+ . .+. ....|.+++++...+.+...+|+ ++++||||+++ |+
T Consensus 87 --------~~~~~~------------~~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~ 140 (235)
T 2w0m_A 87 --------IIDALM------------KEKE-D--QWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP 140 (235)
T ss_dssp --------EEECCC-----------------C--TTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG
T ss_pred --------EEeccc------------cccC-c--eee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH
Confidence 000000 0000 0 011 12349999998888888888999 99999999887 99
Q ss_pred HHHHHHHHHHHHh-c-CCcEEEEEcCCH--------HHHHHhcCEEEEEeCCE
Q 002236 799 ASRNNLWNVVKRA-K-QGRAIILTTHSM--------EEAEALCDRLGIFVDGS 841 (949)
Q Consensus 799 ~sr~~l~~~L~~~-~-~g~tIIltTH~m--------eeae~l~drI~Im~~G~ 841 (949)
..++.+++.|++. + .|.|||++||++ +.++.+||++++|.+.+
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 141 AMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9999999999875 3 589999999999 55999999999998754
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.70 E-value=1.8e-18 Score=212.29 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=112.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
+.+++|++|+ ++|++++|+|||||||||++|+|+|+..+ ..| ..+.. .+..+|+++| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----hcccceeHHH---HHhhCCHH
Confidence 5699999999 99999999999999999999999997432 222 12211 1235666655 55555655
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 803 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~ 803 (949)
|++.. ..+++|+||++ ++.+...+.+|+++|||||++|+|+..+..
T Consensus 661 d~l~~---------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~ 706 (800)
T 1wb9_A 661 DDLAS---------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLS 706 (800)
T ss_dssp ------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHH
T ss_pred HHHHh---------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHH
Confidence 55421 12346777765 555566799999999999999999988887
Q ss_pred H-HHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 804 L-WNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 804 l-~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
+ |++++.+ + .|.++|++||+++.++ +||++..+.+|++.....
T Consensus 707 i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 707 LAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEEEEEc
Confidence 6 8888875 4 4899999999998764 899988899999887643
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.70 E-value=2.1e-20 Score=192.43 Aligned_cols=158 Identities=18% Similarity=0.118 Sum_probs=108.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 737 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~ 737 (949)
||+++|+||||||||||+++|+|+++ ++| |.++|+++.. ....++++||++|+. ... ++++ +++.. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~-~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE-VRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-EP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE-EETTSSEEEEEEEET--TSC---EEEE---EECCC-CC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch-hHhhhceEEEEEEec--ccc---eehh---hcccc-cC
Confidence 78999999999999999999999999 999 9999988843 335678899999974 111 1111 11110 00
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH-HHHH---HHcCCCcEEEEeC--CCCCCCHHHHHHHHHHHHHh
Q 002236 738 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL-SVAI---SLIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRA 811 (949)
Q Consensus 738 ~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL-slA~---ALi~~P~vllLDE--PTsGLDp~sr~~l~~~L~~~ 811 (949)
. +........++...+|+|||+++ ++++ |+..+|+++|||| |+..+|+...+.++++++
T Consensus 69 ~-------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-- 133 (189)
T 2i3b_A 69 P-------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-- 133 (189)
T ss_dssp C-------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH--
T ss_pred C-------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh--
Confidence 0 00000123455667999999888 4454 6899999999999 899999987777776665
Q ss_pred cCCcEEEE----EcCCHHHHHHhcCEEEEEeCCEEEEE
Q 002236 812 KQGRAIIL----TTHSMEEAEALCDRLGIFVDGSLQCI 845 (949)
Q Consensus 812 ~~g~tIIl----tTH~meeae~l~drI~Im~~G~l~~~ 845 (949)
+.+++|+ +||+.+ ..++|||..+.+|++...
T Consensus 134 -~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 -TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp -CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred -CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 3445554 349863 234455555577777654
No 109
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.69 E-value=1.4e-21 Score=198.59 Aligned_cols=173 Identities=14% Similarity=0.079 Sum_probs=119.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 737 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~ 737 (949)
|++++|+|||||||||++++|++ |.+|.++++|.++... ..+|+++|.....+.+++++++.+.++......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM-----VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT-----CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh-----hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999997 7789999998765321 246788887655556688888876543221000
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCC--ChhHHHHHHHHH------HHcCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002236 738 PALTQAVEESLKSVNLFHGGVADKQAGKY--SGGMKRRLSVAI------SLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 809 (949)
Q Consensus 738 ~~~~~~v~~~L~~l~L~~~~~~~~~~~~L--SGGqKqRLslA~------ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~ 809 (949)
. ..+++.+. . ....+...++ |+||+|++.++. +++.+|+...+|| |+|+..++. |+.+.
T Consensus 74 ~------~~ild~~~-~--~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 74 N------DVVLDYIA-F--PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp C------EEEEESCC-C--HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred C------cEEEeecc-C--HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 0 00111110 0 0111222344 889998988888 8999998888884 899999999 99998
Q ss_pred Hhc-CCcEEEEEcCC-HHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 810 RAK-QGRAIILTTHS-MEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 810 ~~~-~g~tIIltTH~-meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
... .+.+||.+||. +++++++||+|+ ++|+++..|+++-|..
T Consensus 141 ~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~ 184 (189)
T 2bdt_A 141 SKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEH 184 (189)
T ss_dssp HTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--------
T ss_pred hcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhh
Confidence 864 57899999999 999999999998 9999999999887754
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.69 E-value=4.7e-19 Score=195.17 Aligned_cols=150 Identities=16% Similarity=0.102 Sum_probs=110.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-----HHHh--hccEEEEcCCCCCCCCCCHHHHHHHH
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRI--YTSMGVCPQEDLLWETLTGREHLLFY 729 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-----~~~~--r~~iG~~pQ~~~L~~~lTv~E~L~~~ 729 (949)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.|+... ...+ +..++|++|+..+++.+|++|++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999998542 1122 45799999999999989999998764
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 002236 730 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 809 (949)
Q Consensus 730 ~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~ 809 (949)
. .++.. ..+++..|+.+ ..+.. ++...|||+++|||++.+|+.++| +||+.+++.+++.++
T Consensus 181 ~-~~~~d--------~~llDt~G~~~--~~~~~---~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~ 241 (304)
T 1rj9_A 181 K-ARGYD--------LLFVDTAGRLH--TKHNL---MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAK 241 (304)
T ss_dssp H-HHTCS--------EEEECCCCCCT--TCHHH---HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHH
T ss_pred H-hCCCC--------EEEecCCCCCC--chHHH---HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHH
Confidence 2 22211 01233344431 22333 344558999999999999995555 555555566777776
Q ss_pred Hhc--CCcEEEEEcCCHH
Q 002236 810 RAK--QGRAIILTTHSME 825 (949)
Q Consensus 810 ~~~--~g~tIIltTH~me 825 (949)
+.. .|.|+|++||+.+
T Consensus 242 ~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 242 KFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHCCSEEEEECTTS
T ss_pred HHHHHcCCcEEEEECCcc
Confidence 642 3899999999844
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.68 E-value=3.3e-19 Score=182.61 Aligned_cols=179 Identities=16% Similarity=0.094 Sum_probs=101.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-----CCCcceEEEcCeecCccH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTDM 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~-----~ptsG~I~i~G~di~~~~ 700 (949)
+|+++|++|.|+ ..++++ |.+++|+.++|+|+||||||||++.|+|.. .|+.|++.+.|.-...+.
T Consensus 3 ~l~~~~~~~~~~-------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHFVMS-------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG 73 (210)
T ss_dssp --------CEEE-------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT
T ss_pred chhhhhhhheee-------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC
Confidence 478999999995 257888 999999999999999999999999999998 889998765331100000
Q ss_pred HHhhccEEEEcCCCCCCCCC--CHHHHHHHHhh----hcC------C--CchhHHHHHHHHHHHcCCCCCCcccccCCCC
Q 002236 701 DRIYTSMGVCPQEDLLWETL--TGREHLLFYGR----LKN------L--KGPALTQAVEESLKSVNLFHGGVADKQAGKY 766 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~l--Tv~E~L~~~~~----l~g------~--~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~L 766 (949)
..+...-|+..+.. -... ..+..+..+.+ ..+ . .....++++.++++..++.. -....++..+
T Consensus 74 ~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~nK~D~~ 150 (210)
T 1pui_A 74 KRLVDLPGYGYAEV--PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV-LVLLTKADKL 150 (210)
T ss_dssp EEEEECCCCC--------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGGS
T ss_pred EEEEECcCCccccc--CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEecccCC
Confidence 00000001100000 0000 01111222211 000 0 11223345666777777742 1236678899
Q ss_pred ChhHHHH-HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcE
Q 002236 767 SGGMKRR-LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRA 816 (949)
Q Consensus 767 SGGqKqR-LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~t 816 (949)
|+||||| +..+++++.+|+++++|||||++|+.+++++++.|.+. .+|.+
T Consensus 151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 151 ASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp CHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred CchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999 89999999999999999999999999999999999874 44543
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.66 E-value=2.7e-18 Score=192.52 Aligned_cols=163 Identities=12% Similarity=0.089 Sum_probs=106.7
Q ss_pred ceeeee-EEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCc----ce-EEEcCeecCccHHHhhccEEEEcCCCCCC
Q 002236 646 VAVNGL-SLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTS----GT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLW 717 (949)
Q Consensus 646 ~al~~l-Sl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~--~pts----G~-I~i~G~di~~~~~~~r~~iG~~pQ~~~L~ 717 (949)
..||++ .+.+++|++++|+||||||||||++.|+|.. +|++ |+ |+|++.+.. .++++++++|...++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----CHHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----CHHHHHHHHHHcCCC
Confidence 467776 6899999999999999999999999999998 7777 67 899987642 124466677766554
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-------CCCcEEEEe
Q 002236 718 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-------GNPKVVYMD 790 (949)
Q Consensus 718 ~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi-------~~P~vllLD 790 (949)
+. ++.||+.+... .-|++++|++..+++++ .+|++|++|
T Consensus 193 ~~-~v~~ni~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 193 PD-EVLKHIYVARA---------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp HH-HHGGGEEEEEC---------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred HH-HHhhCEEEEec---------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 33 44444322110 01455666666666666 799999999
Q ss_pred CCCCCCCHHH------------HHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcC
Q 002236 791 EPSTGLDPAS------------RNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 791 EPTsGLDp~s------------r~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs 847 (949)
|||+++|+.. .++++..|+++ + .|.|||+|+|..++.+...+.......|++...+.
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 9999999962 34555566653 3 48999999999987776555556667777665444
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=3.2e-18 Score=196.14 Aligned_cols=165 Identities=20% Similarity=0.185 Sum_probs=101.0
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhh
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 704 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r 704 (949)
.+|.++||++.|++ +.+++|++|+| +|+|+||||||||+++|+|+..|+.|. +|.++.......+
T Consensus 10 ~~l~~~~l~~~y~~------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYR------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTT------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----CCEE
T ss_pred CcEEEEecceeECC------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccceee
Confidence 36889999999973 57999999998 999999999999999999999876662 3333221111123
Q ss_pred ccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 002236 705 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 784 (949)
Q Consensus 705 ~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P 784 (949)
+.+++++|++.++..+|+.|++.+.....+ ....+.+.+.++ ..++.+++||++||+|++.+|
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~--------------~~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID--------------SKFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EEEECC------CEEEEEEECC--------------CHHHHHHHH--------------HHHHHHTTTSCC-CCCCCCCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccCC
Confidence 568999999988888999999877543221 111111222221 134567788999999999999
Q ss_pred c---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHH
Q 002236 785 K---VVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSME 825 (949)
Q Consensus 785 ~---vllLDEPT-sGLDp~sr~~l~~~L~~~~~g~tIIltTH~me 825 (949)
+ +|++|||| .|||+... ++++.++.+..||++.|-.|
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~D 178 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKAD 178 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTT
T ss_pred CeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEccc
Confidence 9 99999999 69999874 34444555777777777654
No 114
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.64 E-value=1.1e-16 Score=172.96 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=106.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 733 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~ 733 (949)
.+++|++++|+||||||||||++.|+|... .|++ +.|.++.. ...+.|+..++... .+.+.+. .+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~-----~~~v~~~~~e~~~~---~~~~r~~---~~- 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP-----TGPVIYLPAEDPPT---AIHHRLH---AL- 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC-----CCCEEEEESSSCHH---HHHHHHH---HH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC-----CccEEEEECCCCHH---HHHHHHH---HH-
Confidence 478999999999999999999999998654 5666 34554321 23577776554320 1111111 11
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCC--CCCHHHH---HHHHHHH
Q 002236 734 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST--GLDPASR---NNLWNVV 808 (949)
Q Consensus 734 g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTs--GLDp~sr---~~l~~~L 808 (949)
+... .....+++++.+++.+ ..++.+..||+||++++ ++++.+|++|++||||+ ++|+..+ +.+++.|
T Consensus 91 g~~~--~~~~~~~~~~~l~l~~--~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 91 GAHL--SAEERQAVADGLLIQP--LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp HTTS--CHHHHHHHHHHEEECC--CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred Hhhc--ChhhhhhccCceEEee--cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 1111 1234566788888863 67889999999998765 68888999999999999 9998544 7788888
Q ss_pred HHh-c-CCcEEEEEcCCHHHHHH
Q 002236 809 KRA-K-QGRAIILTTHSMEEAEA 829 (949)
Q Consensus 809 ~~~-~-~g~tIIltTH~meeae~ 829 (949)
+++ + .|.|||+++|++++++.
T Consensus 164 ~~l~~~~g~tvi~i~H~~~~~~~ 186 (279)
T 1nlf_A 164 EAIAADTGCSIVFLHHASKGAAM 186 (279)
T ss_dssp HHHHHHHCCEEEEEEEC------
T ss_pred HHHHHHcCCEEEEEecCCCcccc
Confidence 775 3 49999999999987653
No 115
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.63 E-value=9.4e-21 Score=213.13 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=115.7
Q ss_pred eeeeEEEEeC--CcEEEEECCCCCcHHHHHHHHhCCCCCCc----ceEEEc----CeecCccHHHhhccEEEEcCCCCCC
Q 002236 648 VNGLSLALPS--GECFGMLGPNGAGKTTFISMMIGITRTTS----GTAYVQ----GLDIRTDMDRIYTSMGVCPQEDLLW 717 (949)
Q Consensus 648 l~~lSl~v~~--Gei~gLLG~NGAGKTTLlk~L~Gl~~pts----G~I~i~----G~di~~~~~~~r~~iG~~pQ~~~L~ 717 (949)
.+.|+++|++ |+.++|+|+||||||||+++|+|+++|++ |+++++ |.++......+ ++|++++|+..++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDY 236 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHH
Confidence 4679999999 99999999999999999999999999999 888764 33321111111 2244444422111
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-CCCcEEEEeC---CC
Q 002236 718 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-GNPKVVYMDE---PS 793 (949)
Q Consensus 718 ~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi-~~P~vllLDE---PT 793 (949)
. .|++||+.+ ++. +..++.+..+|+|++|+..+++++. .+|++++||| |+
T Consensus 237 ~-~t~~~nl~~----------------------~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 237 A-VRHSHKIAF----------------------IDT---DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp H-HHHCSSEEE----------------------ESS---CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred H-HhccCCEEE----------------------EeC---CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 1 122222111 000 1223334456677788888887774 6999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEEeCCEEEEEcCHHHHHH
Q 002236 794 ------TGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 853 (949)
Q Consensus 794 ------sGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~ 853 (949)
.++|+..|..+++.|++. + .|.+||+++|. .+.+++++++.++++ +...|++++|++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 589999999999999875 3 38899999976 677888988877754 445556666543
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=4.1e-17 Score=183.39 Aligned_cols=135 Identities=19% Similarity=0.201 Sum_probs=96.3
Q ss_pred cceeeeeEE-------EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCeecCccHHHhhccEEEEcCCCCC
Q 002236 645 KVAVNGLSL-------ALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 716 (949)
Q Consensus 645 ~~al~~lSl-------~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt-sG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L 716 (949)
...++++.+ .+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++... .+...++++|....
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~~~~v~q~~~~ 179 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVH 179 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCSSSEEEEEEBT
T ss_pred CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhccccceeeeeec
Confidence 345666665 77899999999999999999999999999998 56665444333221 12233455554322
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCC
Q 002236 717 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 796 (949)
Q Consensus 717 ~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGL 796 (949)
...++..+ +||+||..+|+++++||||
T Consensus 180 ~~~~~~~~--------------------------------------------------~La~aL~~~PdvillDEp~--- 206 (356)
T 3jvv_A 180 RDTLGFSE--------------------------------------------------ALRSALREDPDIILVGEMR--- 206 (356)
T ss_dssp TTBSCHHH--------------------------------------------------HHHHHTTSCCSEEEESCCC---
T ss_pred cccCCHHH--------------------------------------------------HHHHHhhhCcCEEecCCCC---
Confidence 21111111 9999999999999999999
Q ss_pred CHHHHHHHHHHHHH-hcCCcEEEEEcCCHHHHHHhcCEEEEEeCC
Q 002236 797 DPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDG 840 (949)
Q Consensus 797 Dp~sr~~l~~~L~~-~~~g~tIIltTH~meeae~l~drI~Im~~G 840 (949)
|+.. ++.+.+ ...|++||+|+|+++.+ ..|||++.|..|
T Consensus 207 d~e~----~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 DLET----IRLALTAAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp SHHH----HHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred CHHH----HHHHHHHHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 6555 344333 45799999999999988 579999988654
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.59 E-value=1.4e-18 Score=175.91 Aligned_cols=152 Identities=10% Similarity=-0.001 Sum_probs=102.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 733 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~ 733 (949)
.+++|++++|+|||||||||++++|+|. |+.|.|.++|.++.... ..++.++|++|... +.+|+.|++.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78999999998763221 11244678888644 4578899887754321
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcc--cccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 002236 734 NLKGPALTQAVEESLKSVNLFHGGVA--DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 811 (949)
Q Consensus 734 g~~~~~~~~~v~~~L~~l~L~~~~~~--~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~ 811 (949)
...... ..++.+++.+++. ... +..+..+|+|++||+.+||++..+|+++ +|+..++.+++.++..
T Consensus 80 ~~~~~~--~~~~~~~~~~~l~--~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 80 AKEGYF--VILDGVVRPDWLP--AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHTSCE--EEECSCCCTTTTH--HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred hccCCe--EEEeccCcHHHHH--HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 000000 0011111111221 111 3456789999999999999999999876 6999999999888664
Q ss_pred cC-CcEEEEEcC
Q 002236 812 KQ-GRAIILTTH 822 (949)
Q Consensus 812 ~~-g~tIIltTH 822 (949)
.+ +..+|.++|
T Consensus 148 ~~~~~~~i~t~~ 159 (191)
T 1zp6_A 148 GAFEHHVLPVSG 159 (191)
T ss_dssp GGGGGGEEECTT
T ss_pred CcccccEEECCC
Confidence 32 344555553
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.58 E-value=4.4e-16 Score=162.86 Aligned_cols=146 Identities=12% Similarity=0.185 Sum_probs=88.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhC--CCCC-----CcceEEEcCeecC--ccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIG--ITRT-----TSGTAYVQGLDIR--TDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~G--l~~p-----tsG~I~i~G~di~--~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
.+++|++++|+||||||||||++.|+| +.+| ..|.+++++.+.. ....+..+.+|+.+|+ +.|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~ 91 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD 91 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence 588999999999999999999999999 5665 6788999887631 1122233344544331 111
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH-HHHHHHHc--CCCcEEEEeCCCCCCCHH--
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR-LSVAISLI--GNPKVVYMDEPSTGLDPA-- 799 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR-LslA~ALi--~~P~vllLDEPTsGLDp~-- 799 (949)
++ .+ ....++.+..+ +.-+.+++ .+|+++++|||++.+|+.
T Consensus 92 ~~-------------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 92 NV-------------------------AY---------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp TE-------------------------EE---------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred Ce-------------------------EE---------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 11 10 01123332221 22222222 689999999999999985
Q ss_pred -----H-----HHHHHHHHHHh-c-CCcEEEEEcCCHHHHHH-------------------hcCEEEEEeCCE
Q 002236 800 -----S-----RNNLWNVVKRA-K-QGRAIILTTHSMEEAEA-------------------LCDRLGIFVDGS 841 (949)
Q Consensus 800 -----s-----r~~l~~~L~~~-~-~g~tIIltTH~meeae~-------------------l~drI~Im~~G~ 841 (949)
+ .+.+++.|++. + .|.|||+++|.+++.+. +||++++|.+|+
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 3 33455555553 3 39999999998887665 899999998763
No 119
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=1.1e-14 Score=147.88 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=72.8
Q ss_pred cccccCCCCChhHHHHHHHHHHHc----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCE
Q 002236 758 VADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 833 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~ALi----~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~dr 833 (949)
..++.+..||||||||+++|++|+ .+|++++|||||+|||+.+++.+++.|++..++.++|++||+.+. ...|||
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~-~~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVM-MANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHH-HTTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHH-HHhCCE
Confidence 456778899999999999999997 457999999999999999999999999988777899999999765 468999
Q ss_pred EEEE--eCCEE
Q 002236 834 LGIF--VDGSL 842 (949)
Q Consensus 834 I~Im--~~G~l 842 (949)
++.+ .+|.-
T Consensus 136 i~~v~~~~g~s 146 (173)
T 3kta_B 136 IIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCEE
Confidence 9865 45543
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=1.1e-15 Score=157.57 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=102.5
Q ss_pred cceeeeeEE-EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 645 KVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl-~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
...|+++.. .+++|++++|.|+||||||||++.|++ .+..+.+++++.+- .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~-----------------------~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGG-----------------------FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCC-----------------------CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCC-----------------------CCHH
Confidence 457777776 799999999999999999999999999 44444555544320 0111
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH--HHHHHHHHHHcCC-CcEEEEeCCCCCCCHHH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--KRRLSVAISLIGN-PKVVYMDEPSTGLDPAS 800 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq--KqRLslA~ALi~~-P~vllLDEPTsGLDp~s 800 (949)
.+.-.....+... +++++.+. +.++|+++ +++++.+++++.+ |+++++||||+++|+..
T Consensus 61 -~~~~~~~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 61 -RLVQMAETRGLNP-------EEALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp -HHHHHHHTTTCCH-------HHHHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred -HHHHHHHhcCCCh-------HHHhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 1110011111111 12223222 22345553 5688889999986 99999999999999843
Q ss_pred H-----HH---HHHHHHHh-cC-CcEEEEEcCCHH-------------HHHHhcCEEEEEeCCE
Q 002236 801 R-----NN---LWNVVKRA-KQ-GRAIILTTHSME-------------EAEALCDRLGIFVDGS 841 (949)
Q Consensus 801 r-----~~---l~~~L~~~-~~-g~tIIltTH~me-------------eae~l~drI~Im~~G~ 841 (949)
. +. +.+.|+++ ++ |.+||+++|... .++.+||++++|.+..
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~ 186 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLP 186 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECS
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEec
Confidence 2 33 44446664 33 899999999876 5788999999998653
No 121
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.56 E-value=1.9e-18 Score=192.81 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=124.2
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-----
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----- 700 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~----- 700 (949)
+|+++++++.|+ .+.+++++|+++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.++....
T Consensus 29 ~ie~~~~~~~~~------~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~ 102 (337)
T 2qm8_A 29 LAESRRADHRAA------VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI 102 (337)
T ss_dssp HHTCSSHHHHHH------HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCS
T ss_pred HHeeCCcccccC------hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccch
Confidence 467788999995 257999999999999999999999999999999999999999999999999985422
Q ss_pred HHhhccEEEEcCCCCCCCCCC------------HHHHHHHHh-----------------------------hhcCCC-ch
Q 002236 701 DRIYTSMGVCPQEDLLWETLT------------GREHLLFYG-----------------------------RLKNLK-GP 738 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~lT------------v~E~L~~~~-----------------------------~l~g~~-~~ 738 (949)
...+++||+++|++.++...+ ++|.+.... .+.... ..
T Consensus 103 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 103 LGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGD 182 (337)
T ss_dssp SCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--
T ss_pred HHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcc
Confidence 235678999999988875321 233221110 000000 00
Q ss_pred hH---HHHHHHHHHHcCCCCCCcccc-cCCCCChhHHHHHHHHHHHcC------CCcEEEEeCCCCCCCHHHHHHHHHHH
Q 002236 739 AL---TQAVEESLKSVNLFHGGVADK-QAGKYSGGMKRRLSVAISLIG------NPKVVYMDEPSTGLDPASRNNLWNVV 808 (949)
Q Consensus 739 ~~---~~~v~~~L~~l~L~~~~~~~~-~~~~LSGGqKqRLslA~ALi~------~P~vllLDEPTsGLDp~sr~~l~~~L 808 (949)
+. ++.+.+....+.+. +.|. ...++|+|++|++..|++++. +|++++ +|++|+.....+|+.|
T Consensus 183 ~~~~i~~~i~~~~~ivvlN---K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 183 ELQGIKKGIFELADMIAVN---KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp ----CCTTHHHHCSEEEEE---CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred cHHHHHHHHhccccEEEEE---chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 10 00111222222232 3453 335689999999999999998 688887 9999999999999999
Q ss_pred HHh
Q 002236 809 KRA 811 (949)
Q Consensus 809 ~~~ 811 (949)
.+.
T Consensus 256 ~~~ 258 (337)
T 2qm8_A 256 EDH 258 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.55 E-value=3.5e-16 Score=176.87 Aligned_cols=130 Identities=21% Similarity=0.206 Sum_probs=102.5
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt-sG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~ 725 (949)
++++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. ..+..+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEeee-----------
Confidence 456655 7899999999999999999999999999998 8999887766542 2456788888841
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHH
Q 002236 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 805 (949)
Q Consensus 726 L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~ 805 (949)
+|+. +..+ +.+++.+|..+|+++++|||+ |+.. ++
T Consensus 191 -------------------------~g~~--------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~---~~ 225 (372)
T 2ewv_A 191 -------------------------VGED--------TKSF------ADALRAALREDPDVIFVGEMR---DLET---VE 225 (372)
T ss_dssp -------------------------BTTT--------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH---HH
T ss_pred -------------------------cCCC--------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH---HH
Confidence 2331 1233 469999999999999999999 7765 44
Q ss_pred HHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 806 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 806 ~~L~~~~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
.+++....|.+|+.|+|+.+ +...|||++.|.
T Consensus 226 ~~l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 226 TALRAAETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 55666667999999999965 778899987664
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.55 E-value=2.4e-18 Score=190.33 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=113.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC--------CCCcceEEEcCeecCcc----------------HHHhhccEEEE---c
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGIT--------RTTSGTAYVQGLDIRTD----------------MDRIYTSMGVC---P 711 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~--------~ptsG~I~i~G~di~~~----------------~~~~r~~iG~~---p 711 (949)
++++|+|+||||||||+|+|.|+. .|+.|+|.|+|.++... ....++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 88999999999988542 22345668877 6
Q ss_pred CCCCCCCCCCHHHHHHHHh--hh-cCC-CchhH--HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCc
Q 002236 712 QEDLLWETLTGREHLLFYG--RL-KNL-KGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 785 (949)
Q Consensus 712 Q~~~L~~~lTv~E~L~~~~--~l-~g~-~~~~~--~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~ 785 (949)
|+..++.++++.|+..+.. .+ +.+ ..... ...++.++..+++. ...++.. ++|+|||||+..+++++.+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~--~~~~~~~-~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAV--HADEQMN-QFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETT--THHHHHH-HCHHHHHHHHTCSEEEEECTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHH--HHHHHHh-hchHHHHHHHhCCEEEEECcc
Confidence 8776666777777664320 00 000 00000 01122233444554 2333333 799999999988888888888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcC
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCD 832 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~d 832 (949)
++ ||| +.+++.|++.+.+.+|+++||+..+++.+.|
T Consensus 162 l~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSC
T ss_pred cC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHhC
Confidence 87 888 7788888888789999999998777776654
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.54 E-value=4.1e-17 Score=173.03 Aligned_cols=142 Identities=19% Similarity=0.177 Sum_probs=106.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh---CCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhh--
Q 002236 657 SGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-- 731 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~---Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~-- 731 (949)
++++++|+|||||||||++++|+ |+..|++|++.++|.+... .....+++++|+..+++..++.|++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9999999999988765322 223445667788888888899999976321
Q ss_pred ------hcCCCchhHHHHHHHHHH--HcC------------CCCCCcccccCCCCChhHHHHHHHHHHH-cCCCcEEEEe
Q 002236 732 ------LKNLKGPALTQAVEESLK--SVN------------LFHGGVADKQAGKYSGGMKRRLSVAISL-IGNPKVVYMD 790 (949)
Q Consensus 732 ------l~g~~~~~~~~~v~~~L~--~l~------------L~~~~~~~~~~~~LSGGqKqRLslA~AL-i~~P~vllLD 790 (949)
+.|.+... ..++.+.+ .++ +. ...++++.+||| |+ +|+ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~--r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKD--RLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHH--HHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHH--HHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 23433322 22233221 222 11 234678889999 55 777 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhc
Q 002236 791 ----EPSTGLDPASRNNLWNVVKRAK 812 (949)
Q Consensus 791 ----EPTsGLDp~sr~~l~~~L~~~~ 812 (949)
|||+|+|+.+++.+++.++++.
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998754
No 125
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.53 E-value=4.8e-17 Score=162.70 Aligned_cols=89 Identities=24% Similarity=0.171 Sum_probs=75.4
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEE
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 709 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~ 709 (949)
++++|.|+ ++.+++++||++++||+++|+||||||||||+|+|+|++ |++|+|.++|+++.... +.+ .+
T Consensus 11 ~~~~~~~g------~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~-~~~---~~ 79 (158)
T 1htw_A 11 EFSMLRFG------KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY-NIA---GK 79 (158)
T ss_dssp HHHHHHHH------HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE-EET---TE
T ss_pred HHHHHHHH------HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec-cCC---Cc
Confidence 46677785 367999999999999999999999999999999999999 99999999999885321 111 27
Q ss_pred EcCCCCCCCCCCHHHHHHHHh
Q 002236 710 CPQEDLLWETLTGREHLLFYG 730 (949)
Q Consensus 710 ~pQ~~~L~~~lTv~E~L~~~~ 730 (949)
++|+..++ .+|+.|++.+.+
T Consensus 80 ~~q~~~l~-~ltv~e~l~~~g 99 (158)
T 1htw_A 80 MIYHFDLY-RLADPEELEFMG 99 (158)
T ss_dssp EEEEEECT-TCSCTTHHHHST
T ss_pred ceeccccc-cCCcHHHHHHcC
Confidence 99999888 899999997644
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.51 E-value=1.2e-16 Score=185.25 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=111.4
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-----HHH--hhccEEEEcCCCCCCCCC
Q 002236 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDR--IYTSMGVCPQEDLLWETL 720 (949)
Q Consensus 648 l~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-----~~~--~r~~iG~~pQ~~~L~~~l 720 (949)
.+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+... ... .|++|+|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4678999999999999999999999999999999999999999998887542 112 367899999999888889
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-CCC-cEEEEeCCCCCCCH
Q 002236 721 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-GNP-KVVYMDEPSTGLDP 798 (949)
Q Consensus 721 Tv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi-~~P-~vllLDEPTsGLDp 798 (949)
|+++++.+... ++.. . -+++..|+.+ ....... -.+|++.+++++. ..| .++|...+++|.|.
T Consensus 363 tV~e~l~~a~~-~~~D------v--VLIDTaGrl~--~~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~a 427 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID------V--LIADTAGRLQ--NKSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA 427 (503)
T ss_dssp HHHHHHHHHHH-TTCS------E--EEECCCCSCC--CHHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH
T ss_pred HHHHHHHHHHh-cCCC------E--EEEeCCCccc--hhhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHH
Confidence 99999987533 2221 0 0223333321 1111112 3357788888764 456 46666669998765
Q ss_pred HHHHHHHHHHHHh--cCCcEEEEEcCCHHHH
Q 002236 799 ASRNNLWNVVKRA--KQGRAIILTTHSMEEA 827 (949)
Q Consensus 799 ~sr~~l~~~L~~~--~~g~tIIltTH~meea 827 (949)
. +.++.. .-|.|.|+.|| +++.
T Consensus 428 l------~~ak~f~~~~~itgvIlTK-LD~t 451 (503)
T 2yhs_A 428 V------SQAKLFHEAVGLTGITLTK-LDGT 451 (503)
T ss_dssp H------HHHHHHHHHTCCSEEEEEC-GGGC
T ss_pred H------HHHHHHHhhcCCCEEEEEc-CCCc
Confidence 5 233333 24788999999 6653
No 127
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.51 E-value=2.7e-17 Score=193.01 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=120.0
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCee-cCccHHHhhccEEEEcCCC--------
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDMDRIYTSMGVCPQED-------- 714 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~d-i~~~~~~~r~~iG~~pQ~~-------- 714 (949)
...+++++++.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+ +.... ...+++..|..
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~ 322 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDM 322 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCH
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCH
Confidence 3568999999999999999999999999999999999999999999999865 22110 12344444321
Q ss_pred --------------CCCCCCCHHHHHHHHhhhc-CCC------chhHHHHHHHHHHH-cCCCCC--Cccc---ccCCCCC
Q 002236 715 --------------LLWETLTGREHLLFYGRLK-NLK------GPALTQAVEESLKS-VNLFHG--GVAD---KQAGKYS 767 (949)
Q Consensus 715 --------------~L~~~lTv~E~L~~~~~l~-g~~------~~~~~~~v~~~L~~-l~L~~~--~~~~---~~~~~LS 767 (949)
.++.++++.|.+.++.... |.. .....+.++.+... +++... ...+ .+...+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 2345677788776655543 321 12222223222211 222110 0112 3445689
Q ss_pred hhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEE--EcCCHHHHHHhcC
Q 002236 768 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIIL--TTHSMEEAEALCD 832 (949)
Q Consensus 768 GGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIl--tTH~meeae~l~d 832 (949)
||||||+++|++ | ++||||..++.+|+.|.+.. +|+|+++ +||++++++.+|+
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999998876521 7 99999999999988887764 5889985 9999999998884
No 128
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.50 E-value=7.1e-15 Score=164.99 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=103.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEc-CeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQ-GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-ptsG~I~i~-G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
.+++|++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.+. |.+..+ ..++.++++||+..+++..|++|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t---t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT---TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc---eEEEEEEEECCCCEecCcccHHH
Confidence 56777765 4899999999999999999999999999 999999987 765432 23567999999999999999998
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
+ .+.+++.++..+.+.++++.+++. .+.++...+|| ||+||+++|+++ ++..|...
T Consensus 281 ~-----~l~~l~~~e~~~~~~e~l~~~gl~--~f~~~~~~~lS-G~~~r~ala~gl----------------i~~~R~~~ 336 (358)
T 2rcn_A 281 F-----GLWHLEPEQITQGFVEFHDYLGHC--KYRDCKHDADP-GCAIREAVENGA----------------IAETRFEN 336 (358)
T ss_dssp C-----CCCCCCHHHHHHTSGGGGGGTTCS--SSTTCCSSSCT-TCHHHHHHHHTS----------------SCHHHHHH
T ss_pred h-----hhcCCCHHHHHHHHHHHHHHcCCc--hhcCCCcccCC-HHHHHHHHHhcC----------------CCHHHHHH
Confidence 4 234555666777888999999997 48999999999 999999999764 45567777
Q ss_pred HHHH-HHhc
Q 002236 805 WNVV-KRAK 812 (949)
Q Consensus 805 ~~~L-~~~~ 812 (949)
|..| .+.+
T Consensus 337 y~~l~~e~~ 345 (358)
T 2rcn_A 337 YHRILESMA 345 (358)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 6655 4443
No 129
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=7.2e-16 Score=176.44 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=117.7
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcE--EEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHH
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 702 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei--~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~ 702 (949)
.+++++ +|.|++ +. ++++||++++|++ +||+|+||||||||+++|+|+. ++|.++.. ....
T Consensus 16 ~l~~~~-~~~y~~------~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~ 79 (427)
T 2qag_B 16 TVPLAG-HVGFDS------LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGV 79 (427)
T ss_dssp -CCCCC-CC-CC--------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSC
T ss_pred eEEEee-EEEECC------ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccc
Confidence 355666 888863 45 9999999999999 9999999999999999999984 34444321 1122
Q ss_pred hhccEEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCch----hHHHHHHHHHHHc-CCCCC--CcccccC-----------
Q 002236 703 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGP----ALTQAVEESLKSV-NLFHG--GVADKQA----------- 763 (949)
Q Consensus 703 ~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g-~~~~----~~~~~v~~~L~~l-~L~~~--~~~~~~~----------- 763 (949)
.++.+||++|++.+++.+|+.|++.+...... .... .+.+..+++++.. ++... ...|.++
T Consensus 80 ~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 80 QLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 34679999999998888999999866432110 0011 1344555666655 44210 1122221
Q ss_pred CCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCcEEEEEcCCH
Q 002236 764 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHSM 824 (949)
Q Consensus 764 ~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~-~~-~g~tIIltTH~m 824 (949)
..|+-.. +.++++|..+.+||++|||+..|.+.....+.+.|++ ++ .|..|+.+|.+-
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 2455554 7899999999999999999999999999999999986 64 588999988753
No 130
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.49 E-value=2.6e-15 Score=168.96 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=105.0
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEc-CCCCCCCCCCHHHHH
Q 002236 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGREHL 726 (949)
Q Consensus 648 l~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~p-Q~~~L~~~lTv~E~L 726 (949)
++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|..- ......++.+++++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e-~~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE-LFLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC-CCCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc-cCccccCCEEEEeecCcccc----------
Confidence 4999999999999999999999999999999999999999999998531 11223467789998 65431
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 806 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~ 806 (949)
+ ++++...|-.|+.++..+|+.+++||+.. .+.++
T Consensus 234 -------------------------~-------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~ 268 (361)
T 2gza_A 234 -------------------------E-------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD 268 (361)
T ss_dssp -------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH
T ss_pred -------------------------c-------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH
Confidence 0 01222356777778888999999999986 35677
Q ss_pred HHHHhcCC-cEEEEEcCCHHHHHHhcCEEEEEeCCE
Q 002236 807 VVKRAKQG-RAIILTTHSMEEAEALCDRLGIFVDGS 841 (949)
Q Consensus 807 ~L~~~~~g-~tIIltTH~meeae~l~drI~Im~~G~ 841 (949)
.|+.+..| .|++.++|..+ ++..+||+..|..|.
T Consensus 269 ~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 269 FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 78777665 57899999965 778899999988774
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.45 E-value=1.2e-14 Score=161.60 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=102.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-----HHhhc--cEEEEcCCCCCCCCCCHHHHH
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRIYT--SMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-----~~~r~--~iG~~pQ~~~L~~~lTv~E~L 726 (949)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+++ .+.+++|...+.+.++++|++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999999999986421 22233 455999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 806 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~ 806 (949)
.+... .+... -+++..|+.+ ..+....+|| .+++++..++.+++||.+| | +.+.+
T Consensus 205 ~~~~~-~~~d~--------vliDtaG~~~--~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~------~~~~~ 259 (328)
T 3e70_C 205 QHAKA-RGIDV--------VLIDTAGRSE--TNRNLMDEMK-------KIARVTKPNLVIFVGDALA-G------NAIVE 259 (328)
T ss_dssp HHHHH-HTCSE--------EEEEECCSCC--TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-T------THHHH
T ss_pred HHHHh-ccchh--------hHHhhccchh--HHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-H------HHHHH
Confidence 86432 11110 0123344431 2233333343 3889999888888899554 4 34455
Q ss_pred HHHHhc--CCcEEEEEcCC
Q 002236 807 VVKRAK--QGRAIILTTHS 823 (949)
Q Consensus 807 ~L~~~~--~g~tIIltTH~ 823 (949)
.++... .+.|+|++||.
T Consensus 260 ~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 260 QARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHSCCCEEEEECG
T ss_pred HHHHHHHhcCCCEEEEeCc
Confidence 555543 48899999994
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=2.4e-13 Score=153.25 Aligned_cols=77 Identities=29% Similarity=0.406 Sum_probs=69.9
Q ss_pred ccCCCCChhHHHHH------HHHHHHcCC-CcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCE
Q 002236 761 KQAGKYSGGMKRRL------SVAISLIGN-PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 833 (949)
Q Consensus 761 ~~~~~LSGGqKqRL------slA~ALi~~-P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~dr 833 (949)
+++.+||||||||+ ++|+|++++ |+++||||||+|||+..++.+++.|++.+++.+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999987 567899999 999999999999999999999999998766679999999986 5789999
Q ss_pred EEEEe
Q 002236 834 LGIFV 838 (949)
Q Consensus 834 I~Im~ 838 (949)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 133
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=1.4e-16 Score=180.95 Aligned_cols=167 Identities=11% Similarity=0.109 Sum_probs=127.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhC------------CCCCCcceEEEcCeecCccH--HHhhccE---EEEcCCCCC
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIG------------ITRTTSGTAYVQGLDIRTDM--DRIYTSM---GVCPQEDLL 716 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~G------------l~~ptsG~I~i~G~di~~~~--~~~r~~i---G~~pQ~~~L 716 (949)
.+++|+.+||+|+||||||||+++|+| ...|++|.+.+.|..+.... .+-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 67799999999986542211 1112333 478888888
Q ss_pred CCCCCHHHHH--HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--cEEEEeCC
Q 002236 717 WETLTGREHL--LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEP 792 (949)
Q Consensus 717 ~~~lTv~E~L--~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P--~vllLDEP 792 (949)
.+.++..|++ .|.+.+++.. .++..++.. .+..+..+||++ +| ++.++|||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~----~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF----DDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC----CTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc----ccceeeeecccc------------Ccchhhhhchhh
Confidence 8888877766 5555554321 122233332 245566677764 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-cC-CcEEEEEcCCHHHHHHhcCEEE-EEeCC-EEEEEcC
Q 002236 793 STGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLG-IFVDG-SLQCIGN 847 (949)
Q Consensus 793 TsGLDp~sr~~l~~~L~~~-~~-g~tIIltTH~meeae~l~drI~-Im~~G-~l~~~Gs 847 (949)
+.++|+..+++.|+.+.+. .+ |.||+ +|.+++++++|||+. +|.+| +++..|+
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 9999999999999999886 54 67764 999999999999999 99999 8876665
No 134
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=2.7e-15 Score=164.84 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=91.7
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCeecCccHHHhh-ccEEEEcCCCCCC-----CCCCHH
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIY-TSMGVCPQEDLLW-----ETLTGR 723 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i---~G~di~~~~~~~r-~~iG~~pQ~~~L~-----~~lTv~ 723 (949)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++++......+ +.+||++|.+.+. +.+|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 345679999999999999999999999 99999999999 9998865433333 3689999998653 78899
Q ss_pred HHH--HHH------hhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 002236 724 EHL--LFY------GRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 778 (949)
Q Consensus 724 E~L--~~~------~~l~g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ 778 (949)
|++ .|. +++++ ....+...+++++++.++|.+ ...+++++.|||..+|++.+||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~-~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISC-ERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCH-HHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 887 332 13444 234445678999999999962 2678899999999999999986
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.43 E-value=2.6e-14 Score=143.89 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=77.4
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l 732 (949)
+.+++|+.++|.||||+|||||+++|+|.+.|++|... -| +++.|.+....
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-----------------~~----------~~~~~~~~~~~-- 83 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-----------------YF----------FDTKDLIFRLK-- 83 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-----------------CE----------EEHHHHHHHHH--
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-----------------EE----------EEHHHHHHHHH--
Confidence 45667999999999999999999999999877666311 01 23333322111
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHh
Q 002236 733 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNVVKRA 811 (949)
Q Consensus 733 ~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTs-GLDp~sr~~l~~~L~~~ 811 (949)
.....-.. . -+...+.+|++|+||||++ ++|+..++.+++++.+.
T Consensus 84 -------------~~~~~~~~------~---------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~ 129 (180)
T 3ec2_A 84 -------------HLMDEGKD------T---------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYR 129 (180)
T ss_dssp -------------HHHHHTCC------S---------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHH
T ss_pred -------------HHhcCchH------H---------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH
Confidence 11111000 0 0112234899999999985 99999999999999875
Q ss_pred -cCCcEEEEEcCCHHHH
Q 002236 812 -KQGRAIILTTHSMEEA 827 (949)
Q Consensus 812 -~~g~tIIltTH~meea 827 (949)
++|+++|+|||...+.
T Consensus 130 ~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 130 YNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTTCEEEEECCCCSCC
T ss_pred HHcCCCEEEEcCCChhH
Confidence 5799999999987543
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.6e-13 Score=150.25 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=80.1
Q ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-
Q 002236 661 FGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP- 738 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~G-l~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~- 738 (949)
+.|.||||+||||++++|+| +..|+.|++.++|.+...... .+..+++++|.+.+.-..+ + .+....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~ 107 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHLEITPS--D--------MGNNDRI 107 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC--------------CCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceEEecHh--h--------cCCcchH
Confidence 89999999999999999999 899999999999987754322 3567899999765421111 0 011111
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 002236 739 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAII 818 (949)
Q Consensus 739 ~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tII 818 (949)
..++.++++.+..++. ... +||| +.++|+++|+|||++ ||+.++..+++.+.+..++.++|
T Consensus 108 ~~~~~i~~~~~~~~~~------~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVD------FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEE
T ss_pred HHHHHHHHHHHhcccc------ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEE
Confidence 2233333333333332 111 5676 788999999999999 99999999999999877789999
Q ss_pred EEcCCHHH
Q 002236 819 LTTHSMEE 826 (949)
Q Consensus 819 ltTH~mee 826 (949)
++||+.+.
T Consensus 169 l~t~~~~~ 176 (354)
T 1sxj_E 169 MVCDSMSP 176 (354)
T ss_dssp EEESCSCS
T ss_pred EEeCCHHH
Confidence 99999764
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.38 E-value=2.9e-16 Score=174.46 Aligned_cols=175 Identities=20% Similarity=0.221 Sum_probs=123.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCC-------cEEEEECCCCCcHHHHHHHHhCCC----CCCcceEEEcCee
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSG-------ECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLD 695 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~G-------ei~gLLG~NGAGKTTLlk~L~Gl~----~ptsG~I~i~G~d 695 (949)
++.+++++.|++ ..+++++++.+++| +.++|.||||+|||||+++|+|.+ .+++|.+..+|.+
T Consensus 19 lr~~~l~~~~g~------~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 19 LRPKSLDEFIGQ------ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp TSCSSGGGCCSC------HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred cCCccHHHccCc------HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 334566666753 56899999999877 899999999999999999999998 7888988877766
Q ss_pred cCccHHHh-hccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC----chhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 002236 696 IRTDMDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 770 (949)
Q Consensus 696 i~~~~~~~-r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~----~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq 770 (949)
+....... +..|++++|.+.+.+ ++.|++.......+.. .....+.+...++.+++. .++..+..||+|+
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li---~at~~~~~Ls~~l 167 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV---GATTRSGLLSSPL 167 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEE---EEESCGGGSCHHH
T ss_pred HHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE---EecCCcccCCHHH
Confidence 54322222 467999999888776 7888885433322221 122234455566666663 3677889999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhcCE
Q 002236 771 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDR 833 (949)
Q Consensus 771 KqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--~g~tIIltTH~meeae~l~dr 833 (949)
|||+.++ .+|||.++..+.++|++.. .+ ++|+.+.++.++++
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 9998654 7889989999999998743 23 37999999998876
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.37 E-value=1.1e-13 Score=136.66 Aligned_cols=94 Identities=16% Similarity=0.336 Sum_probs=72.8
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG--~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
+++++ +|+.++|+||||+|||||+++|+|...+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 55555 8999999999999999999999999887 57 556555432211
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
+++.+|++|++|||++ +|+..++.+
T Consensus 79 ------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l 103 (149)
T 2kjq_A 79 ------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALL 103 (149)
T ss_dssp ------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHH
T ss_pred ------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHH
Confidence 2345799999999998 676669999
Q ss_pred HHHHHHh-cCCcE-EEEEcCC-HHH
Q 002236 805 WNVVKRA-KQGRA-IILTTHS-MEE 826 (949)
Q Consensus 805 ~~~L~~~-~~g~t-IIltTH~-mee 826 (949)
++++.+. .+|++ +|+|||. +++
T Consensus 104 ~~li~~~~~~g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 104 FSIFNRFRNSGKGFLLLGSEYTPQQ 128 (149)
T ss_dssp HHHHHHHHHHTCCEEEEEESSCTTT
T ss_pred HHHHHHHHHcCCcEEEEECCCCHHH
Confidence 9999875 45788 8999994 443
No 139
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.35 E-value=4.8e-15 Score=163.16 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=105.2
Q ss_pred CcEEEEeEEEEcCCCCCCCccceeeeeEEEE-------------------eCCcEEEEECCCCCcHHHHHHHHhCCCC--
Q 002236 625 HAIISDNLRKIYPGRDGNPEKVAVNGLSLAL-------------------PSGECFGMLGPNGAGKTTFISMMIGITR-- 683 (949)
Q Consensus 625 ~~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v-------------------~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-- 683 (949)
.+|+++||+|.|+ .+++++++.+ ++|+++||+|+||||||||+++|+|++.
T Consensus 36 ~~i~~~~v~~~y~--------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp TTCCHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred cccchHhHHHHHH--------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 4688999999993 5899999988 9999999999999999999999999988
Q ss_pred CCcceEEE---cCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc
Q 002236 684 TTSGTAYV---QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 760 (949)
Q Consensus 684 ptsG~I~i---~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~ 760 (949)
|++|+|.+ +|.... ...++.+|++ |...+++.+|+.+++.+..++++-.. .+ .
T Consensus 108 ~~~G~i~vi~~d~~~~~---~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------------~i------~ 163 (308)
T 1sq5_A 108 PEHRRVELITTDGFLHP---NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------------NV------T 163 (308)
T ss_dssp TTCCCEEEEEGGGGBCC---HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------------CE------E
T ss_pred CCCCeEEEEecCCccCc---HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------------ce------e
Confidence 99999999 887753 2345668999 88888888999999998776653211 00 1
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCH
Q 002236 761 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 798 (949)
Q Consensus 761 ~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp 798 (949)
.+.-..+. .+|+..+.+.+.+++++|+|.|....|+
T Consensus 164 ~P~~~~~~--~~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 164 APVYSHLI--YDVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECCEETTT--TEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccccc--cCcccccceecCCCCEEEECchhhCCCc
Confidence 11111111 1233323345678999999999998874
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.34 E-value=1.5e-15 Score=174.03 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=106.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-----H
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----D 701 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-----~ 701 (949)
+.+++|.+.|+ .+.+|+++ +. ++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... .
T Consensus 144 ~~l~~Lg~~~~------~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~ 215 (418)
T 1p9r_A 144 LDLHSLGMTAH------NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQT 215 (418)
T ss_dssp CCGGGSCCCHH------HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEE
T ss_pred CCHHHcCCCHH------HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceE
Confidence 45566666664 35688888 54 899999999999999999999999999999999999998875321 1
Q ss_pred HhhccEEEEc---------CCCCC--CCC----CCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCccccc
Q 002236 702 RIYTSMGVCP---------QEDLL--WET----LTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQ 762 (949)
Q Consensus 702 ~~r~~iG~~p---------Q~~~L--~~~----lTv~E~L~~~~~l~----g~~~~~~~~~v~~~L~~l~L~~~~~~~~~ 762 (949)
.+++.+|+.+ |++.+ +.+ .|+++++.+...-+ .+......+.+ +.|..+++.+ . ..
T Consensus 216 ~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~--~--~~ 290 (418)
T 1p9r_A 216 QVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEP--F--LI 290 (418)
T ss_dssp ECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCH--H--HH
T ss_pred EEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcH--H--HH
Confidence 2344566655 87754 344 68899887643211 11112222333 3577788852 2 37
Q ss_pred CCCCChhHHHHHHHHHHHcCCCcEEEE
Q 002236 763 AGKYSGGMKRRLSVAISLIGNPKVVYM 789 (949)
Q Consensus 763 ~~~LSGGqKqRLslA~ALi~~P~vllL 789 (949)
+.+|||||+|| ||++|+.+|++..-
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 78999999999 99999999999763
No 141
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.31 E-value=9.4e-15 Score=147.97 Aligned_cols=108 Identities=17% Similarity=0.128 Sum_probs=72.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCeecCc-c---HHHhh-ccEE----EEcCCCCCCCCCCHHHHH
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT-D---MDRIY-TSMG----VCPQEDLLWETLTGREHL 726 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~pt---sG~I~i~G~di~~-~---~~~~r-~~iG----~~pQ~~~L~~~lTv~E~L 726 (949)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++.. + .+.+| +.+| +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999999998 8999999998643 2 34555 4677 889987665 010
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHH-c-CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKS-V-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~-l-~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
+ ..+....++++++. + ++. ......||||||||++||||++++|++
T Consensus 77 -------~--~~~~~a~l~~~i~~~l~g~d-----t~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 -------V--SEEEGNDLDWIYERYLSDYD-----LVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp -------C--CHHHHTCHHHHHHHHTTTCS-----EEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred -------C--ChhhhhCHHHHHHhhCCCCC-----EEEECCcCCCCCcEEEEEecccCCCcc
Confidence 0 11111134455554 4 332 122234999999999999999999987
No 142
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.27 E-value=3e-13 Score=154.85 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=102.6
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCC----CCCCCCCHH
Q 002236 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED----LLWETLTGR 723 (949)
Q Consensus 648 l~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~----~L~~~lTv~ 723 (949)
-++++|+++.|++++|+|+||||||||+++|+|..+ .+.+++..+ +...+|++++++ .+++.....
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS----SCCEEEEEECSSSCEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce----ecceeeEEEecCcceEEEEeccccc
Confidence 479999999999999999999999999999999853 344444332 123466666543 111111000
Q ss_pred HHHHHHhhhcCCCchhHH--HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHH
Q 002236 724 EHLLFYGRLKNLKGPALT--QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 801 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~--~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr 801 (949)
+. .....++.....+ ++++.++..+++. ++++.+||+|++|++++|++|+.+|.++++ +++|+..+
T Consensus 217 ~~---a~~~~~L~~~fl~~~era~~lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 217 EG---ASEGKGLGLEFLRHIARTRVLLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CC---GGGSCCSCHHHHHHHTSSSEEEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cc---hhhhhhhhHHHHHHHHHHHhhhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 00 0011112111000 1112223333331 566788999999999999999999999999 99999877
Q ss_pred HHHHHHHHHhc-CCcEEE-EEcCCHHHHHHhcCEE
Q 002236 802 NNLWNVVKRAK-QGRAII-LTTHSMEEAEALCDRL 834 (949)
Q Consensus 802 ~~l~~~L~~~~-~g~tII-ltTH~meeae~l~drI 834 (949)
..+.++.+.++ .|.+++ +|+|..+.++.+++++
T Consensus 285 ~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 285 EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 43333334444 465555 5557666677666654
No 143
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.27 E-value=7.9e-14 Score=153.03 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=78.3
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCeecCccHHHhh-ccEEEEcCCCC-------------
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIY-TSMGVCPQEDL------------- 715 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i---~G~di~~~~~~~r-~~iG~~pQ~~~------------- 715 (949)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|++++......+ +.+||++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 9998865432222 36899999874
Q ss_pred ---CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 002236 716 ---LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 768 (949)
Q Consensus 716 ---L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSG 768 (949)
+|+++|+ ||+.|.... ...+...++.++|+.++|.. +..++++..||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~-~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEIAE-SRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCH-HHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCH-HHHHHHHHHHHH
Confidence 6888999 988874321 12334567899999999952 467888888885
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.27 E-value=9.8e-13 Score=149.95 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=91.2
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHH--HHhCCCCCCcc-----eEEEcCeecCc--cHHHhhccEEEEcCCCCCCCCCCHH
Q 002236 653 LALPSGECFGMLGPNGAGKTTFIS--MMIGITRTTSG-----TAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGR 723 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk--~L~Gl~~ptsG-----~I~i~G~di~~--~~~~~r~~iG~~pQ~~~L~~~lTv~ 723 (949)
=.|++|++++|+||||+|||||++ ++.++.+++.| .+++++.+... ....+.+++|+.+| ++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl 244 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL 244 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence 378999999999999999999999 44678777555 88888876321 11222334444333 222
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHHHHHHHHHHH--cCCCcEEEEeCCCCCCCHHH
Q 002236 724 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMKRRLSVAISL--IGNPKVVYMDEPSTGLDPAS 800 (949)
Q Consensus 724 E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSG-GqKqRLslA~AL--i~~P~vllLDEPTsGLDp~s 800 (949)
||+.+. ...++ .+.+.+.-+.++ ..+|++|++|||++.+|+..
T Consensus 245 eni~~~----------------------------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 245 NNVAYA----------------------------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp HTEEEE----------------------------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred hcEEEe----------------------------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 222110 00111 112222222222 25799999999999999753
Q ss_pred H------------HHHHHHHHHh-c-CCcEEEEEcCCHH-------------------HHHHhcCEEEEEeCCE
Q 002236 801 R------------NNLWNVVKRA-K-QGRAIILTTHSME-------------------EAEALCDRLGIFVDGS 841 (949)
Q Consensus 801 r------------~~l~~~L~~~-~-~g~tIIltTH~me-------------------eae~l~drI~Im~~G~ 841 (949)
. +.+.+.|+++ + .|.|||+++|... .++..+|.++.|.+|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 4566667664 3 3899999999832 2467788888888764
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.26 E-value=1.9e-13 Score=149.59 Aligned_cols=125 Identities=17% Similarity=0.098 Sum_probs=91.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHh------
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG------ 730 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~------ 730 (949)
++.++||.|++|||||||.+.|.+++.+. | . -++.+.+++|++.+++. +.++++.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------CCceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 57899999999999999999999999763 2 0 13446666999988875 8888887752
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCC------CCCcccccCCCCChhHHHHHHHH--HHHcCCCcEEEEeCCCCCCCHH
Q 002236 731 RLKNLKGPALTQAVEESLKSVNLF------HGGVADKQAGKYSGGMKRRLSVA--ISLIGNPKVVYMDEPSTGLDPA 799 (949)
Q Consensus 731 ~l~g~~~~~~~~~v~~~L~~l~L~------~~~~~~~~~~~LSGGqKqRLslA--~ALi~~P~vllLDEPTsGLDp~ 799 (949)
..+|.+.....+...+.++.+.-. ...........+||||+||+++| +++ +|+|||+|||++|+|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 123444443445566677776432 10123445578999999999987 555 99999999999999985
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.23 E-value=2.3e-13 Score=150.00 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=74.1
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCeecCccHHHhhccEEEEcCCCCCCC----CCCHHHH
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYTSMGVCPQEDLLWE----TLTGREH 725 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i---~G~di~~~~~~~r~~iG~~pQ~~~L~~----~lTv~E~ 725 (949)
+++.+|++++|+|+||||||||+|+|+|+.+|++|+|.+ +|+.++......+..+||++|.+.+.. .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567799999999999999999999999999999999999 888876543322333899999987765 6899 88
Q ss_pred HH-HHhhh---------cC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 002236 726 LL-FYGRL---------KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 773 (949)
Q Consensus 726 L~-~~~~l---------~g-~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqR 773 (949)
+. .+..+ ++ ....+...+++++++.++|. +.+.+...+++.|+|||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~--~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELK--QYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSC--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHhhc
Confidence 83 22221 22 12233456789999999996 34556667778888873
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.21 E-value=2e-15 Score=155.51 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=88.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC-------------CCcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITR-------------TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLT 721 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-------------ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lT 721 (949)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++.. .....++.+ +|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence 5799999999999999999999999875 77887 57776643 333444433 34443321 23
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH----HHHHHH-HHcCCCcEEEEeCCCCCC
Q 002236 722 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR----RLSVAI-SLIGNPKVVYMDEPSTGL 796 (949)
Q Consensus 722 v~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKq----RLslA~-ALi~~P~vllLDEPTsGL 796 (949)
+.+|+ +|.+ .+.++++++.-... ..+.. + .|-++ ++ .|+ +++.+|++++|||+|+++
T Consensus 76 ~~~n~------~g~~----~~~i~~~~~~~~~~---~~~~~---~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~ 137 (198)
T 1lvg_A 76 FSGNL------YGTS----KEAVRAVQAMNRIC---VLDVD---L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLR 137 (198)
T ss_dssp ETTEE------EEEE----HHHHHHHHHTTCEE---EEECC---H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcc------CCCC----HHHHHHHHHcCCcE---EEECC---H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhc
Confidence 33332 2322 23344444431110 11110 0 11111 12 344 677777888888889999
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhcCEEEEEe
Q 002236 797 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 838 (949)
Q Consensus 797 Dp~sr~~l~~~L~~~~~g~tIIltTH~meeae~l~drI~Im~ 838 (949)
|..+.+.+.+.|.+..++ +...|+ . ..+|+|++++
T Consensus 138 d~~~e~~i~~~l~~~~~~---~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 138 NTETEESLAKRLAAARTD---MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp TCSCHHHHHHHHHHHHHH---TTGGGS--T--TTCSEEEECS
T ss_pred CCCCHHHHHHHHHHHHHH---HHHhhc--c--CCceEEEECC
Confidence 999988898888765433 233452 1 4688887665
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.19 E-value=8.5e-15 Score=158.71 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=107.4
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhccEEEEcCCC-CCCCCCCH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQED-LLWETLTG 722 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~-~L~~~lTv 722 (949)
..+++++++.+++| ++|+||||+|||||+++|+|...+ |.+.++|.++.. ...+.++.+++++|.. ...+.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 46899999999999 999999999999999999999887 799999988754 2334456788888864 44555666
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCC--------
Q 002236 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-------- 794 (949)
Q Consensus 723 ~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTs-------- 794 (949)
.|++...+..++. .... .+. ...++...+|||||+||+.+++|+..+|++| ||+..
T Consensus 109 ~Deid~~~~~r~~------~~~~------~~~--~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 109 FDEVDALCPRRSD------RETG------ASV--RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp EETCTTTCC---------------------CT--THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred eehhhhhhcccCC------Ccch------HHH--HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 6666543221110 0000 121 3567778899999999999999999999975 99864
Q ss_pred ----CCCHHHHHHHHHHHH
Q 002236 795 ----GLDPASRNNLWNVVK 809 (949)
Q Consensus 795 ----GLDp~sr~~l~~~L~ 809 (949)
--|...|+.+++.+.
T Consensus 173 i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EECCSCCHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHH
Confidence 347888888888764
No 149
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.17 E-value=2.2e-12 Score=131.68 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=82.0
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-HHhhccEEEEcCCCCCCCCCCHHHHHHHHh
Q 002236 652 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYG 730 (949)
Q Consensus 652 Sl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~ 730 (949)
|+++++|+++||+||||||||||+++|+|+++ .+.+.|.++.... ...+..++|+||++.+++.+++.+++..++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57889999999999999999999999999974 6888887765432 234567999999988887777776665444
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCC
Q 002236 731 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 792 (949)
Q Consensus 731 ~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEP 792 (949)
...+.......+.+++.++.-.. -..+ +..+-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~---vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRD---VLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCE---EEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcCCe---EEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 33332222223345555544211 1122 233444555667778888999887
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.16 E-value=4.8e-11 Score=130.85 Aligned_cols=139 Identities=16% Similarity=0.218 Sum_probs=94.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 735 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~ 735 (949)
++|++++++|+||+||||+++.|++.+.+++| ++++++.++.. ..++.|.+..++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----------------~~V~lv~~D~~---r~~a~eqL~~~~~~~-- 160 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----------------KKIAFITTDTY---RIAAVEQLKTYAELL-- 160 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----------------CCEEEEECCCS---STTHHHHHHHHHTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------------CEEEEEecCcc---cchHHHHHHHHHHhc--
Confidence 47999999999999999999999999998888 12444444431 245667776654332
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc---
Q 002236 736 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--- 812 (949)
Q Consensus 736 ~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~--- 812 (949)
++.. ... .+. .. +..|++.+.+|+++|+| |+|+|+..+..++++.+...
T Consensus 161 ----------------gl~~--~~~-----~~~-~~--l~~al~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 161 ----------------QAPL--EVC-----YTK-EE--FQQAKELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ----------------TCCC--CBC-----SSH-HH--HHHHHHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ----------------CCCe--Eec-----CCH-HH--HHHHHHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 2321 111 122 22 34444456999999999 99999988877777665433
Q ss_pred C-CcEEEE-EcCCHHHHHHhcCEEEEEeCCEEEE
Q 002236 813 Q-GRAIIL-TTHSMEEAEALCDRLGIFVDGSLQC 844 (949)
Q Consensus 813 ~-g~tIIl-tTH~meeae~l~drI~Im~~G~l~~ 844 (949)
. +..+++ +||.+++++++++++..+..|.++.
T Consensus 213 ~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 213 SIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 2 335555 5999999999999876555555554
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.13 E-value=2.9e-12 Score=133.93 Aligned_cols=173 Identities=16% Similarity=0.075 Sum_probs=95.0
Q ss_pred cceeeee-EEEEeCCcEEEEECCCCCcHHHHH-HHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCH
Q 002236 645 KVAVNGL-SLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 722 (949)
Q Consensus 645 ~~al~~l-Sl~v~~Gei~gLLG~NGAGKTTLl-k~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv 722 (949)
...||++ .-.+++|++++|.|+||||||||+ +++.+..+...+.+++.+........+..+.+|+.+|+......+++
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence 3466766 668999999999999999999995 55566655555666666654322222222345554432100000000
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCcEEEEeCCCCCC--CH
Q 002236 723 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL--DP 798 (949)
Q Consensus 723 ~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi--~~P~vllLDEPTsGL--Dp 798 (949)
.+ .... .++... ..+.....-+....+.+..+..++ .+|+++++|||++.+ |+
T Consensus 89 ~~----------~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~ 145 (247)
T 2dr3_A 89 VD----------AFTA-----------GIGKSK--EYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKP 145 (247)
T ss_dssp EE----------CSTT-----------TTCC----CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCG
T ss_pred Ee----------cchh-----------hccccc--ccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCH
Confidence 00 0000 000000 000000000112222233333333 479999999999988 66
Q ss_pred HHHHHHHHHHHH-h-cCCcEEEEEcCCHHH--------HHHhcCEEEEEeCC
Q 002236 799 ASRNNLWNVVKR-A-KQGRAIILTTHSMEE--------AEALCDRLGIFVDG 840 (949)
Q Consensus 799 ~sr~~l~~~L~~-~-~~g~tIIltTH~mee--------ae~l~drI~Im~~G 840 (949)
..+++....+.+ + +.|.|||+++|...+ ++..||.++.|...
T Consensus 146 ~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 146 AMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp GGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 444455444444 4 458999999999877 57889999999753
No 152
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.12 E-value=5.4e-15 Score=155.13 Aligned_cols=178 Identities=11% Similarity=0.093 Sum_probs=73.0
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh-CCCCCCcceEEEcCeecCccHH--HhhccEEEEcCCCCCCCCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDMD--RIYTSMGVCPQEDLLWETLT 721 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~-Gl~~ptsG~I~i~G~di~~~~~--~~r~~iG~~pQ~~~L~~~lT 721 (949)
....+++||++++|+++||+|||||||||++++|+ |++++ ...+.++..... .....++|.++....+..++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-----~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-----IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLC 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C-----EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-----cccccccCCCCCCccccCCCeEEEecHHHhhhhh
Confidence 45788999999999999999999999999999999 99854 123332221100 01122345555544333333
Q ss_pred HHHHHHH----HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH-HHH-HHHcCCCcEEEEeCCCCC
Q 002236 722 GREHLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL-SVA-ISLIGNPKVVYMDEPSTG 795 (949)
Q Consensus 722 v~E~L~~----~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL-slA-~ALi~~P~vllLDEPTsG 795 (949)
..+++.. ...+++.+.+ .+++.++.-.. -..+-.+.. ....++++ .-+ ..++..|+..++||+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~---vild~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~ 160 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGVS---TLLVIDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCG 160 (231)
T ss_dssp HTTCEEEEEEETTEEEEEECT----THHHHHHHTCE---EEEECCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC---
T ss_pred hcCceehhhhhccccCCCCHH----HHHHHHHcCCe---EEEEcCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHH
Confidence 3333221 1122222222 23344443211 011111000 11123333 111 223456666777888999
Q ss_pred CCHHHHHHHHHHHHHh----c--CCcEEEEEcCCHHHHHHhcCEEE
Q 002236 796 LDPASRNNLWNVVKRA----K--QGRAIILTTHSMEEAEALCDRLG 835 (949)
Q Consensus 796 LDp~sr~~l~~~L~~~----~--~g~tIIltTH~meeae~l~drI~ 835 (949)
.|..+...+.+.|++. . +...+++.+|+++++.+-.++++
T Consensus 161 R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 161 RRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp -----------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 9888877777766542 1 24567788889988877665554
No 153
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.09 E-value=4e-13 Score=138.86 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=91.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhh
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 731 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt---sG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~ 731 (949)
.++|+++||+||||||||||+++|+|+++|+ .|.|.++|..+.... +..++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~---~~~~~~~~~------------------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL---LEPRGLLPR------------------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH---HGGGTCGGG-------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH---HHHhccccc-------------------
Confidence 4689999999999999999999999999864 566666665543211 011111000
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCC---CCcccccCCCCChhHHHHHHHH-HHHcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002236 732 LKNLKGPALTQAVEESLKSVNLFH---GGVADKQAGKYSGGMKRRLSVA-ISLIGNPKVVYMDEPSTGLDPASRNNLWNV 807 (949)
Q Consensus 732 l~g~~~~~~~~~v~~~L~~l~L~~---~~~~~~~~~~LSGGqKqRLslA-~ALi~~P~vllLDEPTsGLDp~sr~~l~~~ 807 (949)
++.+.........+.+..+...+ ....+ ....+|+||+||+++| ++++.++.++++|||. |..
T Consensus 77 -~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~ 143 (208)
T 3c8u_A 77 -KGAPETFDFEGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRD 143 (208)
T ss_dssp -TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGG
T ss_pred -CCCCchhhHHHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHH
Confidence 11111101111222222221100 01122 2345799999999887 7777777777777773 322
Q ss_pred HHHhcCCcEEEEEcCCHHH-HHHhcCEEEEEeCCEEEEEcCHHHHHHhc
Q 002236 808 VKRAKQGRAIILTTHSMEE-AEALCDRLGIFVDGSLQCIGNPKELKARY 855 (949)
Q Consensus 808 L~~~~~g~tIIltTH~mee-ae~l~drI~Im~~G~l~~~Gs~~~Lk~~~ 855 (949)
+.. .-..+|+++|+.+. .++++.|. +..|+ +.+++.+++
T Consensus 144 l~~--~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 144 LTA--IWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGG--TCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHH--hcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 222 12467888888886 67777772 34454 677777665
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.06 E-value=4.6e-10 Score=122.91 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=98.1
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEE
Q 002236 629 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 708 (949)
Q Consensus 629 v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG 708 (949)
++++++.|++ .. ++++|+ +|++++++|+||+||||+++.|+|++.+..|+|.+.+.|+......
T Consensus 79 ~~~l~~~~~~------~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------ 142 (295)
T 1ls1_A 79 YEALKEALGG------EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------ 142 (295)
T ss_dssp HHHHHHHTTS------SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH------
T ss_pred HHHHHHHHCC------CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH------
Confidence 4556677753 11 678888 9999999999999999999999999999999999999887542110
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEE
Q 002236 709 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 788 (949)
Q Consensus 709 ~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vll 788 (949)
+.+. .+.+..++. ..... ......+.+|.+++.+...+++++|
T Consensus 143 ---------------~ql~------------------~~~~~~~l~---~~~~~-~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 143 ---------------EQLR------------------LLGEKVGVP---VLEVM-DGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp ---------------HHHH------------------HHHHHHTCC---EEECC-TTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred ---------------HHHH------------------HhcccCCeE---EEEcC-CCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0110 112334553 11100 0123345578889988889999999
Q ss_pred EeCC-CCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 002236 789 MDEP-STGLDPASRNNLWNVVKRAKQGRAIIL 819 (949)
Q Consensus 789 LDEP-TsGLDp~sr~~l~~~L~~~~~g~tIIl 819 (949)
+||| +.|+|....+.+.++........++++
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv 217 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLV 217 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEE
Confidence 9999 999999999998888776655545443
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.04 E-value=1.1e-10 Score=128.70 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=84.2
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHH
Q 002236 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFY 729 (949)
Q Consensus 650 ~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~ 729 (949)
.+++..++|++++++|+||+||||+++.|+|.++++.|+|.+.+.|+.... ..|.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HHHH----
Confidence 345667889999999999999999999999999999999999887754211 0122
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH---HHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 002236 730 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL---SVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 806 (949)
Q Consensus 730 ~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRL---slA~ALi~~P~vllLDEPTsGLDp~sr~~l~~ 806 (949)
+..+++.+++. . ...+|||+.+++ ++++|+..+|+++|+|||.. +.....+++
T Consensus 151 --------------L~~~~~~~gl~---~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~ 206 (306)
T 1vma_A 151 --------------LKIWGERVGAT---V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLME 206 (306)
T ss_dssp --------------HHHHHHHHTCE---E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHH
T ss_pred --------------HHHHHHHcCCc---E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHH
Confidence 23344556663 2 235689999999 89999999999999999963 344555655
Q ss_pred HHHH
Q 002236 807 VVKR 810 (949)
Q Consensus 807 ~L~~ 810 (949)
.+++
T Consensus 207 eL~~ 210 (306)
T 1vma_A 207 ELRK 210 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.97 E-value=1.4e-10 Score=134.74 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=50.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~ 698 (949)
..+++++||+|++ |++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 3589999999999 9999999999999999999999999999999999998853
No 157
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.84 E-value=3.4e-09 Score=118.77 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=85.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcce-EEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~-I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l 732 (949)
.+++|+++.|.|+||+|||||...++.......|. ++++..... +. ...+++|+-+++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~-~~-~~a~~lG~~~~~------------------- 115 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL-DP-EYAKKLGVDTDS------------------- 115 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CH-HHHHHTTCCGGG-------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc-CH-HHHHHcCCCHHH-------------------
Confidence 58899999999999999999988877654433343 334332111 00 001111111110
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCcEEEEeCCCCCC----------CH--
Q 002236 733 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEPSTGL----------DP-- 798 (949)
Q Consensus 733 ~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~--~P~vllLDEPTsGL----------Dp-- 798 (949)
+-+ . ...+. .+-+.++++++. +|++|++||+++.+ |+
T Consensus 116 ------------------l~i-----~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 116 ------------------LLV-----S----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp ------------------CEE-----E----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred ------------------eEE-----e----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 000 0 11122 234556777764 49999999999998 43
Q ss_pred -HHHHHHHHHHHH----hc-CCcEEEEEcCCHHH----------------HHHhcCEEEEEeCCEEEEEcC
Q 002236 799 -ASRNNLWNVVKR----AK-QGRAIILTTHSMEE----------------AEALCDRLGIFVDGSLQCIGN 847 (949)
Q Consensus 799 -~sr~~l~~~L~~----~~-~g~tIIltTH~mee----------------ae~l~drI~Im~~G~l~~~Gs 847 (949)
...+.+.+.+++ ++ .|.+||+++|..+. .+.+||.++.++.++....|+
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 222334444433 23 48999999997542 567899999998877655444
No 158
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.83 E-value=1.6e-09 Score=125.25 Aligned_cols=175 Identities=11% Similarity=0.092 Sum_probs=114.3
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCeecCccHHHhhcc-----EEEEcCCCCCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTS-----MGVCPQEDLLWE 718 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG-~I~i~G~di~~~~~~~r~~-----iG~~pQ~~~L~~ 718 (949)
...|+++...+++|+++.|.|++|+||||++..+++...+..| .|.+.+.+... .++.++ .|+-++
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~--~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA--QQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH--HHHHHHHHHHHHTCCHH------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHHcCCCHH------
Confidence 4689999988999999999999999999999999987776555 56555443322 121111 121111
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCcEEEEeCCCCCC
Q 002236 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL 796 (949)
Q Consensus 719 ~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi--~~P~vllLDEPTsGL 796 (949)
.+. -..+. .+..+++.+.++.++.. ...-.....+|.++.+ +.+++++ .+|+++++|+++...
T Consensus 262 ------~l~----~g~l~-~~~~~~~~~a~~~l~~~--~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 ------NLR----TGKLT-PEDWGKLTMAMGSLSNA--GIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp ------HHH----TSCCC-HHHHHHHHHHHHHHHSS--CEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred ------HHh----cCCCC-HHHHHHHHHHHHHHhcC--CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 110 01122 22233455555555433 1223335689999987 4566665 689999999999887
Q ss_pred CH--------HHHHHHHHHHHHh-cC-CcEEEEEcC---------C--HH--------HHHHhcCEEEEEeCCEE
Q 002236 797 DP--------ASRNNLWNVVKRA-KQ-GRAIILTTH---------S--ME--------EAEALCDRLGIFVDGSL 842 (949)
Q Consensus 797 Dp--------~sr~~l~~~L~~~-~~-g~tIIltTH---------~--me--------eae~l~drI~Im~~G~l 842 (949)
++ .....+.+.|+.+ ++ |.+||+++| + +. .++..||.|++|..++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 2335566666664 33 899999999 2 22 57889999999998765
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.83 E-value=1e-10 Score=136.79 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=111.1
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCcceEEEcCeecCccHHHhhccEEEEcCCC-CCCCCCCHHHHH
Q 002236 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-LLWETLTGREHL 726 (949)
Q Consensus 650 ~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G--l~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~-~L~~~lTv~E~L 726 (949)
-+++++.++..+.+.|.+||||||+++.|.+ +.+++.|++.+.+.|.....-..... +|.-- .... ...+-.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~---lPhl~~~Vvt--d~~~a~ 233 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG---IPHLLTEVVT--DMKDAA 233 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT---CTTBSSSCBC--SHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc---CCcccceeec--CHHHHH
Confidence 4678889999999999999999999999876 67788899998888865311111111 11110 0111 122222
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc---ccCCCCChhHHHHH----------HHHHHHcCCCc-EEEEeCC
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD---KQAGKYSGGMKRRL----------SVAISLIGNPK-VVYMDEP 792 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~---~~~~~LSGGqKqRL----------slA~ALi~~P~-vllLDEP 792 (949)
.....+ ..+.+++ .++++..|+.+ ..+ +....+||||+|+. .+|+++...|. ++++||+
T Consensus 234 ~~L~~~----~~EmerR-~~ll~~~Gv~~--i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~ 306 (512)
T 2ius_A 234 NALRWC----VNEMERR-YKLMSALGVRN--LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEF 306 (512)
T ss_dssp HHHHHH----HHHHHHH-HHHHHHTTCSS--HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETH
T ss_pred HHHHHH----HHHHHHH-HHHHHHcCCcc--HHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCH
Confidence 221111 2345555 36788888752 222 22346788987753 34566778898 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHh----cC-CcEEEEEcCCHH-------HHHHhcCEEEEE
Q 002236 793 STGLDPASRNNLWNVVKRA----KQ-GRAIILTTHSME-------EAEALCDRLGIF 837 (949)
Q Consensus 793 TsGLDp~sr~~l~~~L~~~----~~-g~tIIltTH~me-------eae~l~drI~Im 837 (949)
++-+|.. ...+.+.|.++ +. |.++|++||.++ ....+.+||++-
T Consensus 307 ~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 307 ADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred HHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 9988843 34455555432 22 779999999987 456777888664
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.78 E-value=1.4e-10 Score=138.94 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=102.4
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCeecCccHHHhhccEEEEcCCCC--------
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIYTSMGVCPQEDL-------- 715 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts-G~I~i~G~di~~~~~~~r~~iG~~pQ~~~-------- 715 (949)
..+++++++.+.+|+.+.|+||||+|||||+++|+|+.++.. |.+.+.+.+... ....+++||+...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecchHHHHHHHHH
Confidence 579999999999999999999999999999999999999988 888888876542 2356889887531
Q ss_pred --------------CCCCCCHHHHHHHHhh-hcCCCc-hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 002236 716 --------------LWETLTGREHLLFYGR-LKNLKG-PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 779 (949)
Q Consensus 716 --------------L~~~lTv~E~L~~~~~-l~g~~~-~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~A 779 (949)
.+..+++.+|+..... ..+.+- ........+ .+|.. ++.....+.+|+|++|++..++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~---L~G~~--~~~~~~~g~~~~g~~~~i~~g~~ 197 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGA---LLGDV--RHDPFQSGGLGTPAHERVEPGMI 197 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHH---HHCEE--CCCCC----CCCCGGGGEECCHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHh---cCceE--EechhhcCCccccccccccCcee
Confidence 1111111111110000 000000 000001112 22221 12223446799999999999999
Q ss_pred HcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002236 780 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 810 (949)
Q Consensus 780 Li~~P~vllLDEPTsGLDp~sr~~l~~~L~~ 810 (949)
...++.+|+|||... |+|.....+.+.|.+
T Consensus 198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999988 899998888888875
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.78 E-value=7.8e-12 Score=134.78 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=87.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHHhhccEEEEcCCCC-CCCCCCH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETLTG 722 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~~r~~iG~~pQ~~~-L~~~lTv 722 (949)
..+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++... ....++.+++++|... ..+.+++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEe
Confidence 46899999999999 99999999999999999999886 89999998776321 1223345677777642 4566777
Q ss_pred HHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 723 REHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 723 ~E~L~~~~~l~g~----~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
.|++...+..++. ...+..+.+.++ ..+|||||+||+.+++|+..+|++
T Consensus 138 iDeid~l~~~~~~~~~~~~~~~~~~~~~l---------------l~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 138 IDEIDAVGRKRGSGVGGGNDEREQTLNQL---------------LVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EETHHHHHCC--------CHHHHHHHHHH---------------HHHHTTCCTTCCEEEEEEESCTTS
T ss_pred hhhhHhhhcccccccCCcchHHHHHHHHH---------------HHHHhCCCCCCCEEEEEecCCchh
Confidence 7777544322211 112222222222 345889999999999999999976
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.76 E-value=2.3e-10 Score=120.90 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=52.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc------
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 699 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~------ 699 (949)
.|+++|+.+.|+ . ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...
T Consensus 9 ~l~l~~~~~~~~-------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRD 74 (227)
T ss_dssp EEEEEEETTEEE-------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----------------
T ss_pred EEEEEeeecccC-------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccc
Confidence 578888876653 1 466666 89999999999999999999999999999999999987321
Q ss_pred ---HHHhhccEEEEcCC
Q 002236 700 ---MDRIYTSMGVCPQE 713 (949)
Q Consensus 700 ---~~~~r~~iG~~pQ~ 713 (949)
...++..++|++|.
T Consensus 75 ~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 75 KGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp --CGGGBCSSEEEEEEE
T ss_pred cchhhHhhcCcEEEEEe
Confidence 12245789999984
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.75 E-value=8.5e-12 Score=132.32 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=89.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHHhhccEEEEcCCC-CCCCCCCH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQED-LLWETLTG 722 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~~r~~iG~~pQ~~-~L~~~lTv 722 (949)
..+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++... ....++.+++++|.. ...+.+++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 46899999999999 99999999999999999999886 89999998776321 122334567777764 34566777
Q ss_pred HHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCC
Q 002236 723 REHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 793 (949)
Q Consensus 723 ~E~L~~~~~l~g~----~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPT 793 (949)
.|++...+..++. ..++..+.+.++ ...|||||+||+.+++|+..+|++ +|++.
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~l---------------l~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTLNQL---------------LVEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EETHHHHHC---------CHHHHHHHHHH---------------HHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred ehhhhhhhcccCccccccchHHHHHHHHH---------------HHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 7777544332211 112222233333 235789999999999999999987 56653
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.75 E-value=5.1e-10 Score=113.48 Aligned_cols=134 Identities=11% Similarity=0.152 Sum_probs=75.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CcceEEEcCeecCc---cHHHhhccEEEEcCCC----C---CCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRT-----------TSGTAYVQGLDIRT---DMDRIYTSMGVCPQED----L---LWE 718 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~p-----------tsG~I~i~G~di~~---~~~~~r~~iG~~pQ~~----~---L~~ 718 (949)
.++|+|+||||||||++.++|...+ ++|+|.++|.++.. +....++..++.+|.. . .++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999998875 58999999976531 1111112222332210 0 011
Q ss_pred CCC--HHHHHHHH-hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCC
Q 002236 719 TLT--GREHLLFY-GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 795 (949)
Q Consensus 719 ~lT--v~E~L~~~-~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsG 795 (949)
... ..+++..+ ..++..... ...+..++.+++| ..-.+++...|++++.+|+++++| ||+
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl-------------~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDL-------------RHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGG-------------GGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccc-------------ccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 100 11222110 000000000 0000001111111 111123467899999999999999 999
Q ss_pred CCHHHHHHHHHHHHH
Q 002236 796 LDPASRNNLWNVVKR 810 (949)
Q Consensus 796 LDp~sr~~l~~~L~~ 810 (949)
+|+.+.+++++.|.+
T Consensus 174 ld~~~v~~l~~~l~~ 188 (191)
T 1oix_A 174 LDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998865
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.67 E-value=1.1e-10 Score=132.17 Aligned_cols=138 Identities=17% Similarity=0.262 Sum_probs=91.3
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCC-CCCCCCHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGR 723 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~-L~~~lTv~ 723 (949)
..+++++++++++|++++|+||||||||||+++|+|. .+|++...+ ... +..+..+|++||... ++++++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 4689999999999999999999999999999999985 467776511 111 122234778888764 44554433
Q ss_pred HHHHHHhhhcCCCc-hh--HHHHHHHHHHH---cCCC-----------CCCcccccCCCCChhHHHHHHHHHHHcCCCcE
Q 002236 724 EHLLFYGRLKNLKG-PA--LTQAVEESLKS---VNLF-----------HGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 786 (949)
Q Consensus 724 E~L~~~~~l~g~~~-~~--~~~~v~~~L~~---l~L~-----------~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~v 786 (949)
.++ .++... .. ....+.+.++. +.+. .....+.....+++|++||+..+++++.+|++
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 321 111111 11 11233444431 1011 01244667778999999999999899999999
Q ss_pred EE-EeCCCC
Q 002236 787 VY-MDEPST 794 (949)
Q Consensus 787 ll-LDEPTs 794 (949)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 88 999987
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.58 E-value=9.1e-10 Score=111.94 Aligned_cols=35 Identities=9% Similarity=0.252 Sum_probs=31.4
Q ss_pred HHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002236 774 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 810 (949)
Q Consensus 774 LslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~ 810 (949)
...|++++.+|++.++| ||++|+.+.+++++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45688999999999999 999999999999998865
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.55 E-value=5e-09 Score=107.27 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=48.5
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
.+-+..++.++|++++|+|+|||||||++++|+|.+ |.+.++|.++.......+..+|+++|+..+++.+++.+
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 91 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLA 91 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHH
Confidence 344444667889999999999999999999999987 99999998876533333345688888644433333333
No 168
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.51 E-value=1.2e-08 Score=104.58 Aligned_cols=137 Identities=18% Similarity=0.245 Sum_probs=88.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 739 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~ 739 (949)
++||+|+|||||||+.++|+++ |...+++-++ .+.+. + + +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~-------~~~~~---~-----~---------------~----- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV-------AREVV---A-----K---------------D----- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH-------HHHTT---C-----S---------------S-----
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH-------HHHHc---c-----C---------------C-----
Confidence 6899999999999999999993 5555554221 11100 0 0 0
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 002236 740 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 819 (949)
Q Consensus 740 ~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIl 819 (949)
...+.++.+.+|.. .. .+.|+.+|..++.....+|+....+ .+.++|..++.+++.+.... +.++|+
T Consensus 44 -~~~~~~i~~~~g~~---~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~-~~~vv~ 110 (206)
T 1jjv_A 44 -SPLLSKIVEHFGAQ---IL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT-APYTLF 110 (206)
T ss_dssp -CHHHHHHHHHHCTT---CC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC-SSEEEE
T ss_pred -hHHHHHHHHHhCHH---Hh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC-CCEEEE
Confidence 01234455555543 11 3678888999998888888644333 45778999988888776543 568999
Q ss_pred EcCCHHHH--HHhcCEEEEEeCCEEEEEcCHHHHHHhcC
Q 002236 820 TTHSMEEA--EALCDRLGIFVDGSLQCIGNPKELKARYG 856 (949)
Q Consensus 820 tTH~meea--e~l~drI~Im~~G~l~~~Gs~~~Lk~~~g 856 (949)
.+|.+.|. ...||+++++. .+++.+.+|..
T Consensus 111 ~~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~Rl~ 142 (206)
T 1jjv_A 111 VVPLLIENKLTALCDRILVVD-------VSPQTQLARSA 142 (206)
T ss_dssp ECTTTTTTTCGGGCSEEEEEE-------CCHHHHHHHHC
T ss_pred EechhhhcCcHhhCCEEEEEE-------CCHHHHHHHHH
Confidence 99999887 67899987774 56777766653
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.46 E-value=1.7e-08 Score=113.70 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=85.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-----------CCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHH
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITR-----------TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 728 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~-----------ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~ 728 (949)
+++|+|++|||||||++.|+|... |+.|++.++|.++. +....|++.+.+. -.+...-..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~-----l~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM-----LVDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE-----EEECCCBCSSCCG----GGHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE-----EEeCCCchhcCCH----HHHHHHHHH
Confidence 489999999999999999999876 67899999987652 1123455444221 011110000
Q ss_pred Hhhhc---------CCCch-----hHHHHHHHHHHHcCCCCCCcc----cccCCCCChhHHHHHHHH----HHH-cCCCc
Q 002236 729 YGRLK---------NLKGP-----ALTQAVEESLKSVNLFHGGVA----DKQAGKYSGGMKRRLSVA----ISL-IGNPK 785 (949)
Q Consensus 729 ~~~l~---------g~~~~-----~~~~~v~~~L~~l~L~~~~~~----~~~~~~LSGGqKqRLslA----~AL-i~~P~ 785 (949)
...++ ..+.. +..+.+.++++.+++.+ .. ..++..+|+|+++|+..+ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 00111 11111 12234567788877642 22 344667898988888877 666 44555
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 002236 786 VVYMDEPSTGLDPASRNNLWNVVKR 810 (949)
Q Consensus 786 vllLDEPTsGLDp~sr~~l~~~L~~ 810 (949)
+ +|+|++|......+++.|.+
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHH
Confidence 4 89999999999999999876
No 170
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.40 E-value=1.2e-08 Score=104.49 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=47.7
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE--EEcCeecC
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQGLDIR 697 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I--~i~G~di~ 697 (949)
+|+++.++ ...+.++.++..++|++++|+|+|||||||+.++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~------~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHEC------SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------C------CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCccccc------ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 45666554 3567888999999999999999999999999999999988 78988 88987664
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.37 E-value=2.9e-07 Score=113.21 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=61.7
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCC-CCCHHHHHHHHHHHHHhc-CCcEEEEE-cCCHHHHHHhcCE
Q 002236 760 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNVVKRAK-QGRAIILT-THSMEEAEALCDR 833 (949)
Q Consensus 760 ~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTs-GLDp~sr~~l~~~L~~~~-~g~tIIlt-TH~meeae~l~dr 833 (949)
+..+.-+|+|+.+|..++.+++.++++|++|||.. ++|......+++.+.... +.++|++| ||+.+++..++++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 44566789999999999999999999999999996 999888777777776654 46788885 9999988887764
No 172
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.36 E-value=1.9e-08 Score=119.04 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=61.1
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEE-EcCeecCc-----------cHHHhhccEEEEcCCCCCCCC
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAY-VQGLDIRT-----------DMDRIYTSMGVCPQEDLLWET 719 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG-~I~-i~G~di~~-----------~~~~~r~~iG~~pQ~~~L~~~ 719 (949)
..+++|++++|+|+|||||||++++|+|.+.|++| ++. ++|.++.. +....++.+++++|+
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~------ 437 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE------ 437 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH------
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH------
Confidence 35789999999999999999999999999999997 784 88876532 111223446666664
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC
Q 002236 720 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVN 752 (949)
Q Consensus 720 lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~ 752 (949)
++..+++.+.. .+.+....++.+.++++.+|
T Consensus 438 l~~~~~ivi~~--~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 438 ITKNRGIAICA--PIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHHTTCEEEEC--CCCCCHHHHHHHHHHHHTTS
T ss_pred HHhcCCEEEEe--cCCccHHHHHHHHHHHHHcC
Confidence 12222221111 11123556677888888877
No 173
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.31 E-value=1.5e-07 Score=104.26 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=58.4
Q ss_pred eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccH-----HHh-----hccEEEE-cCCCCC
Q 002236 648 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI-----YTSMGVC-PQEDLL 716 (949)
Q Consensus 648 l~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~-----~~~-----r~~iG~~-pQ~~~L 716 (949)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+.... ..+ +.+++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 47889999999999999999999999999999999999999999999986432 223 5679999 666444
Q ss_pred CC
Q 002236 717 WE 718 (949)
Q Consensus 717 ~~ 718 (949)
.+
T Consensus 175 ~p 176 (320)
T 1zu4_A 175 DP 176 (320)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.30 E-value=4.6e-07 Score=101.38 Aligned_cols=127 Identities=14% Similarity=0.215 Sum_probs=84.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 737 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~ 737 (949)
.-.++++|++|+|||||++.|+|... . +.+.+..+. ...++.+.+... .
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t~----~~~~~~~~~~~~---------------~------ 215 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTTR----GINVGQFEDGYF---------------R------ 215 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCSS----CEEEEEEEETTE---------------E------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCeee----ceeEEEEEecCc---------------e------
Confidence 34789999999999999999999752 1 222221110 112344433211 0
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCcE
Q 002236 738 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD-EPSTGLDPASRNNLWNVVKRAKQGRA 816 (949)
Q Consensus 738 ~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLD-EPTsGLDp~sr~~l~~~L~~~~~g~t 816 (949)
+..++.. +..+....++|+|++|++. +.+...++-++++| +|..|+|......+++.+.....+..
T Consensus 216 ----------~~l~Dt~--G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p 282 (357)
T 2e87_A 216 ----------YQIIDTP--GLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP 282 (357)
T ss_dssp ----------EEEEECT--TTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC
T ss_pred ----------EEEEeCC--CccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 0111111 2344567789999998876 66666788899999 99999999998888888876544777
Q ss_pred EEEEc--CCHHHHH
Q 002236 817 IILTT--HSMEEAE 828 (949)
Q Consensus 817 IIltT--H~meeae 828 (949)
+|++. ||+.+..
T Consensus 283 iilV~NK~Dl~~~~ 296 (357)
T 2e87_A 283 FLVVINKIDVADEE 296 (357)
T ss_dssp EEEEECCTTTCCHH
T ss_pred EEEEEECcccCChH
Confidence 77777 8875543
No 175
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.28 E-value=9.5e-08 Score=101.82 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=52.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHh---CCCCCCcceEE--------EcCeecCc--cHHHhhccEEEEcCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAY--------VQGLDIRT--DMDRIYTSMGVCPQED 714 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~---Gl~~ptsG~I~--------i~G~di~~--~~~~~r~~iG~~pQ~~ 714 (949)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++.. ...++++.+|+++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999999 99998843 4567788999999854
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.26 E-value=2e-07 Score=94.30 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=27.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcce
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGT 688 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~ 688 (949)
|++++|+||||||||||+++|+|+++++.|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 6799999999999999999999999855444
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.26 E-value=2.8e-07 Score=93.61 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.1
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 687 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG 687 (949)
+++++|++++|+|||||||||++++|+|++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.23 E-value=4.1e-07 Score=91.00 Aligned_cols=136 Identities=13% Similarity=0.160 Sum_probs=84.7
Q ss_pred ee--eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCe--ec-CccHH----HhhccEEEEcCCCCC-
Q 002236 647 AV--NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL--DI-RTDMD----RIYTSMGVCPQEDLL- 716 (949)
Q Consensus 647 al--~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~--di-~~~~~----~~r~~iG~~pQ~~~L- 716 (949)
.+ +++++++.+| +++|+|+|||||||++++|.+++.++.|...-.+. ++ ..... ..+..|.+++|++.-
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 55 7889999999 99999999999999999999999888775433221 11 11100 234578899987531
Q ss_pred CC----CCCHHHHHHHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEE
Q 002236 717 WE----TLTGREHLLFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 788 (949)
Q Consensus 717 ~~----~lTv~E~L~~~----~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vll 788 (949)
++ .+++...+.-. ..+.| .....+.+.++++.+++..+ + ..-++.|+.+++.
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g--~~~~~~~~~~~l~~~~l~~~---~--~~~~~qg~~~~l~------------- 152 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNG--RRATRSEILDILTAAMISPD---G--YNIVLQGDITKFI------------- 152 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETT--EEECHHHHHHHHHHTTCCTT---C--TTEECTTCTTHHH-------------
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECC--eEcCHHHHHHHHHHcCCCCC---C--CEEEEcccHHHHH-------------
Confidence 11 12222111000 00111 11224678889999999641 1 1347888877764
Q ss_pred EeCCCCCCCHHHHHHHHHHHH
Q 002236 789 MDEPSTGLDPASRNNLWNVVK 809 (949)
Q Consensus 789 LDEPTsGLDp~sr~~l~~~L~ 809 (949)
-++|..|+++++.+.
T Consensus 153 ------~~~~~~r~~~ld~~~ 167 (182)
T 3kta_A 153 ------KMSPLERRLLIDDIS 167 (182)
T ss_dssp ------HSCHHHHHHHHHHHH
T ss_pred ------hCCHHHHHHHHHHHH
Confidence 246788888888764
No 179
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.23 E-value=1e-06 Score=98.92 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=51.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE-EEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I-~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
.+++|+++.|.||+|+|||||+..+++...+..|.+ ++++....... ..+++|+.+|+..+....++.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHHHH
Confidence 488999999999999999999999999888877865 77765543222 335577777665444444554443
No 180
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.22 E-value=1.4e-07 Score=105.61 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=37.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~ 698 (949)
+++.+++|+|++|||||||++.|+|...+++|+|.|.+.|+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3578999999999999999999999999999999998877653
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.17 E-value=4.6e-07 Score=109.67 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=85.7
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCCHHHHHHH
Q 002236 652 SLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLF 728 (949)
Q Consensus 652 Sl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p--tsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~ 728 (949)
++++++|+.++|+|++|||||||++.|+|...+ +.|+| .+|..+.. ...+.++.+++.+|...+... +++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 456789999999999999999999999987665 67888 67776653 344556778887776544321 1100
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002236 729 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 807 (949)
Q Consensus 729 ~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~-~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~ 807 (949)
+ ..|.+.. .++ .......-..+..++++| |+.|+|+..+ .+|+.
T Consensus 77 -----------------------n-----liDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-~~~~~ 121 (665)
T 2dy1_A 77 -----------------------F-----LLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE-RAWTV 121 (665)
T ss_dssp -----------------------E-----EEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-HHHHH
T ss_pred -----------------------E-----EEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-HHHHH
Confidence 0 1121110 011 112222335678899999 9999999877 44554
Q ss_pred HHHhcCCcEEEEEcCCHHHH
Q 002236 808 VKRAKQGRAIILTTHSMEEA 827 (949)
Q Consensus 808 L~~~~~g~tIIltTH~meea 827 (949)
+++ .+..+|++.|.+|..
T Consensus 122 ~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH--TTCCEEEEEECGGGC
T ss_pred HHH--ccCCEEEEecCCchh
Confidence 443 477888999998853
No 182
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.17 E-value=1e-06 Score=102.48 Aligned_cols=115 Identities=21% Similarity=0.328 Sum_probs=76.7
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHH
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 725 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~ 725 (949)
..++++++.+++| +.|.||+|+|||||.+.|+|..... -+.+++. +
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~is~~-----------------------------~- 84 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHISGS-----------------------------D- 84 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEEEGG-----------------------------G-
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeCCHH-----------------------------H-
Confidence 3566777778887 7899999999999999999833100 0000000 0
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCC----------CCC
Q 002236 726 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP----------STG 795 (949)
Q Consensus 726 L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEP----------TsG 795 (949)
.....++ .|++++|-.++.|..+.|.||++||+ +.|
T Consensus 85 --------------------------------~~~~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g 130 (476)
T 2ce7_A 85 --------------------------------FVELFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130 (476)
T ss_dssp --------------------------------TTTCCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------
T ss_pred --------------------------------HHHHHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc
Confidence 0000001 26778888899999999999999999 457
Q ss_pred CCHHHHHHHHHHHHHh-----cCCcEEEEEcCCHHHHH
Q 002236 796 LDPASRNNLWNVVKRA-----KQGRAIILTTHSMEEAE 828 (949)
Q Consensus 796 LDp~sr~~l~~~L~~~-----~~g~tIIltTH~meeae 828 (949)
.|+..++.+.+++..+ +.+..||.+||..+.++
T Consensus 131 ~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 131 GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp --CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred CcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 8888777777777654 24678999999987654
No 183
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.16 E-value=2.9e-08 Score=116.13 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=95.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCcc-HHHhhccEEEEcCCCC-CCCCCCHH
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETLTGR 723 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~-~~~~r~~iG~~pQ~~~-L~~~lTv~ 723 (949)
.+++++++.+++| +.|.||||+|||||++.|+|... .|.+.++|.++... .....++++.++|... ..+.+.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 5788899999999 99999999999999999999875 78999999887432 1122334566677642 34445555
Q ss_pred HHHHHHhhhcC--C--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCC----
Q 002236 724 EHLLFYGRLKN--L--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG---- 795 (949)
Q Consensus 724 E~L~~~~~l~g--~--~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsG---- 795 (949)
|++...+.-++ . ...+..+.+.+++. .||||++|+..+++|...+|++ |||+..-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLlr~gRf 192 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRF 192 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTSSTTSS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHHHHH---------------HhcccccCccEEEEEecCChhh--cCccccccccc
Confidence 55543322111 0 12233334444443 3678888888999999999987 8988653
Q ss_pred --------CCHHHHHHHHHH
Q 002236 796 --------LDPASRNNLWNV 807 (949)
Q Consensus 796 --------LDp~sr~~l~~~ 807 (949)
-|...|+.+++.
T Consensus 193 dr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 193 DRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp CCEEECCCCCHHHHHHHHHH
T ss_pred ceEEecCCCCHHHHHHHHHH
Confidence 466677776653
No 184
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.12 E-value=2.1e-07 Score=99.65 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=36.1
Q ss_pred CcEEEEeE-EEEcCCCCCCCccceeeeeEEEEeC---CcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 625 HAIISDNL-RKIYPGRDGNPEKVAVNGLSLALPS---GECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 625 ~~I~v~nL-~K~Y~~~~~~~~~~al~~lSl~v~~---Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.+++++|+ +|.|++ .+.+|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~-----~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE-----EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecC-----cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 999932 36799999999999 9999999999999999999999855
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.11 E-value=4.4e-08 Score=109.68 Aligned_cols=172 Identities=17% Similarity=0.244 Sum_probs=88.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCcceEEEcCeecCcc-HHHhhccEEEEcCCCC-CCCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETL 720 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G--l~~ptsG~I~i~G~di~~~-~~~~r~~iG~~pQ~~~-L~~~l 720 (949)
..+|++++++++ .++++|++|||||||++.|+| ++++.+|.++-.+..+... .....+..+..++.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 459999999999 899999999999999999999 6677788776544433210 0001122333333221 11110
Q ss_pred -CHHHHHH-----HHhhhcCCCchhHHHHHH----HHHHHcCCCCCCccc-ccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 002236 721 -TGREHLL-----FYGRLKNLKGPALTQAVE----ESLKSVNLFHGGVAD-KQAGKYSGGMKRRLSVAISLIGNPKVVYM 789 (949)
Q Consensus 721 -Tv~E~L~-----~~~~l~g~~~~~~~~~v~----~~L~~l~L~~~~~~~-~~~~~LSGGqKqRLslA~ALi~~P~vllL 789 (949)
.+++.+. ..+..++++.....-.+. .-+..+++. +..+ ...++.+++++++..++++.+.+|++++|
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP--G~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iil 178 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP--GLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIIL 178 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC--CBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC--CCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEE
Confidence 1111111 111111111000000000 000011111 1111 11234678889999999999999998888
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc-CC-cEEEEEcC
Q 002236 790 DEPSTGLDPASRNNLWNVVKRAK-QG-RAIILTTH 822 (949)
Q Consensus 790 DEPTsGLDp~sr~~l~~~L~~~~-~g-~tIIltTH 822 (949)
.-..+..|... ...+++++... .| ++|++.|.
T Consensus 179 vv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 179 AISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred EeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 84444455433 44556666654 34 67777776
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=2.4e-06 Score=94.88 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=75.3
Q ss_pred CCc--EEEEECCCCCcHHHHHHHHhCCCCCCc--ceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhh
Q 002236 657 SGE--CFGMLGPNGAGKTTFISMMIGITRTTS--GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 732 (949)
Q Consensus 657 ~Ge--i~gLLG~NGAGKTTLlk~L~Gl~~pts--G~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l 732 (949)
.+. .+.|.||+|+||||+++.+.+...+.. .-++++..+. .+..+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~-----------------------~~~~~-------- 89 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY-----------------------RNFTA-------- 89 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC-----------------------CSHHH--------
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC-----------------------CCHHH--------
Confidence 355 899999999999999999999877653 2233332111 11111
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH-HHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 002236 733 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK-RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 811 (949)
Q Consensus 733 ~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqK-qRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l~~~L~~~ 811 (949)
.+..+++.++... .....+.++. +++.-...-.++|.+|++||+... |+.....+.+.+.+.
T Consensus 90 ----------~~~~l~~~l~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 90 ----------IIGEIARSLNIPF------PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEA 152 (389)
T ss_dssp ----------HHHHHHHHTTCCC------CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCH
T ss_pred ----------HHHHHHHHhCccC------CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhC
Confidence 1122233333310 1112222222 122111122467899999999876 988888888887653
Q ss_pred c----CCcEEEEEcCCHHHHHHhc
Q 002236 812 K----QGRAIILTTHSMEEAEALC 831 (949)
Q Consensus 812 ~----~g~tIIltTH~meeae~l~ 831 (949)
. .+.++|++||+.+..+.+.
T Consensus 153 ~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 153 DKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCCCcCCEEEEEEECCchHHHHhC
Confidence 2 4778999999987655443
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.03 E-value=2.8e-07 Score=91.67 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=34.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~ 698 (949)
.+|++++|+|+|||||||+.++|++.+ |.+++++.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 468999999999999999999999975 889999877654
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.02 E-value=7.1e-08 Score=106.88 Aligned_cols=139 Identities=11% Similarity=0.090 Sum_probs=79.3
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCc------EEEEECCCCCcHHHHHHHHhCCCC--CCcceEEEcCeecCc-cH
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGE------CFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRT-DM 700 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Ge------i~gLLG~NGAGKTTLlk~L~Gl~~--ptsG~I~i~G~di~~-~~ 700 (949)
+.|++.|+ .+.++++++..+.+++ ++||.||||||||||+++|.|++. |++|.+.+-+.|... ..
T Consensus 64 rll~~~~~------~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~ 137 (321)
T 3tqc_A 64 RLLSFYVT------ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN 137 (321)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred HHHHHhhc------chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch
Confidence 34455564 3678899999998887 999999999999999999999987 566765544333211 11
Q ss_pred HHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 002236 701 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 780 (949)
Q Consensus 701 ~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~AL 780 (949)
... ...|.. .-+|.+.....+...+.++.+.-. ......-.||.++.+|+.-+...
T Consensus 138 ~~l-~~~~~~--------------------~~~g~P~~~D~~~l~~~L~~L~~g---~~~v~~P~yd~~~~~r~~~~~~~ 193 (321)
T 3tqc_A 138 AKL-EKQGLM--------------------KRKGFPESYDMPSLLRVLNAIKSG---QRNVRIPVYSHHYYDIVRGQYEI 193 (321)
T ss_dssp HHH-HHTTCG--------------------GGTTSGGGBCHHHHHHHHHHHHTT---CSSEEEEEEETTTTEEEEEEEEE
T ss_pred hhh-hhHHHH--------------------hhccCcccccHHHHHHHHHhhhcc---ccccccchhhhhccccccCceee
Confidence 100 000000 001222111122233333333211 10112233555555555433456
Q ss_pred cCCCcEEEEeCCCCCCCH
Q 002236 781 IGNPKVVYMDEPSTGLDP 798 (949)
Q Consensus 781 i~~P~vllLDEPTsGLDp 798 (949)
+..|+|+|++.+....|+
T Consensus 194 v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 194 VDQPDIVILEGLNILQTG 211 (321)
T ss_dssp ECSCSEEEEECTTTTCCC
T ss_pred ccCCCEEEEEcccccccc
Confidence 789999999999887765
No 189
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=1.6e-05 Score=91.50 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=79.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 736 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~g~~ 736 (949)
++.+++++|+||+||||++..|++.+.+..++|.+-+.|+... ...|.+..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~---------------------~a~eqL~~~~~----- 149 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP---------------------AAYDQLLQLGN----- 149 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH---------------------HHHHHHHHHHH-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch---------------------hHHHHHHHHHH-----
Confidence 5789999999999999999999999999888888877664321 12334433332
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCC-CC--CCHHHHHHHHHHHHHhcC
Q 002236 737 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS-TG--LDPASRNNLWNVVKRAKQ 813 (949)
Q Consensus 737 ~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPT-sG--LDp~sr~~l~~~L~~~~~ 813 (949)
..++. ..... .....-.-.+-+++.+...+++++|+|+|. .+ .|+....++.++++..+.
T Consensus 150 -------------~~gv~---~~~~~-~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p 212 (433)
T 3kl4_A 150 -------------QIGVQ---VYGEP-NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP 212 (433)
T ss_dssp -------------TTTCC---EECCT-TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC
T ss_pred -------------hcCCc---eeecc-ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC
Confidence 22331 10000 011111122334556666799999999997 45 888888888887666654
Q ss_pred -CcEEEEEcCCH
Q 002236 814 -GRAIILTTHSM 824 (949)
Q Consensus 814 -g~tIIltTH~m 824 (949)
...+++.+|.-
T Consensus 213 d~vlLVlDa~~g 224 (433)
T 3kl4_A 213 DDVILVIDASIG 224 (433)
T ss_dssp SEEEEEEEGGGG
T ss_pred cceEEEEeCccc
Confidence 44556666543
No 190
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.87 E-value=6.6e-07 Score=97.93 Aligned_cols=155 Identities=12% Similarity=0.179 Sum_probs=85.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCC---CCCCCCHHHHHHHHhhh
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL---LWETLTGREHLLFYGRL 732 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~---L~~~lTv~E~L~~~~~l 732 (949)
.++..++|+|++|||||||++.|+|... .+......+. ..+..|++.+.+. +++. -+.+. .....+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~tT---r~~~~gi~~~~~~~i~~iDT-pG~~~-~~~~~l 74 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQTT---RHRIVGIHTEGAYQAIYVDT-PGLHM-EEKRAI 74 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSSCC---SSCEEEEEEETTEEEEEESS-SSCCH-HHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCCcc---eeeEEEEEEECCeeEEEEEC-cCCCc-cchhhH
Confidence 3455899999999999999999999642 1111111111 1245677777542 2221 11100 000000
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCcEEEEeCCCCCCCHHH-HHHHHHHHH
Q 002236 733 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGLDPAS-RNNLWNVVK 809 (949)
Q Consensus 733 ~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi--~~P~vllLDEPTsGLDp~s-r~~l~~~L~ 809 (949)
. +...+.+...++.+++-- -..|. ..+|+|++ .++.++. +.|.++++ +.+|... +..+.+.+.
T Consensus 75 ~----~~~~~~~~~~l~~~D~vl-~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~ 140 (301)
T 1ega_A 75 N----RLMNKAASSSIGDVELVI-FVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQ 140 (301)
T ss_dssp H----HHHTCCTTSCCCCEEEEE-EEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHH
T ss_pred H----HHHHHHHHHHHhcCCEEE-EEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHH
Confidence 0 000000111112222210 01222 23899986 4455565 78999999 7999877 677778887
Q ss_pred HhcC--C--cEEEEEcCCHHHHHHhcCEEE
Q 002236 810 RAKQ--G--RAIILTTHSMEEAEALCDRLG 835 (949)
Q Consensus 810 ~~~~--g--~tIIltTH~meeae~l~drI~ 835 (949)
++.+ | ..+.+++|+.+.++.++|.+.
T Consensus 141 ~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 141 FLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 6532 3 467778888888888777653
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=9.9e-08 Score=105.60 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=43.0
Q ss_pred cceeeeeEEEEeCCcE--EEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCee
Q 002236 645 KVAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei--~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~d 695 (949)
..+++.++..+++|++ +.|.||+|+||||+++++++.+.+..|.+.+.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 5688899999999999 99999999999999999999987777765444443
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.80 E-value=6.6e-06 Score=86.10 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=35.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeec
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di 696 (949)
+.++|++++|.|+|||||||++++|+|+ .|+|.+.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4578999999999999999999999998 78999998875
No 193
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.79 E-value=6.2e-06 Score=82.96 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=30.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEE
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYV 691 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p-tsG~I~i 691 (949)
.+|++++|+||||||||||+++|.|..++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36999999999999999999999998874 4565543
No 194
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.78 E-value=4.3e-06 Score=85.64 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=38.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~ 697 (949)
.++|+++||.|+|||||||++++|.+++++..|.|.+.|.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 5679999999999999999999999999999999988877654
No 195
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=1.2e-05 Score=82.04 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=24.8
Q ss_pred ccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 644 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 644 ~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
...+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 467999999999999999999999999999999999765
No 196
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.72 E-value=2.5e-05 Score=87.10 Aligned_cols=128 Identities=13% Similarity=0.216 Sum_probs=81.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
...|+.+.-.+++|+++.|.|++|+||||+..-++.......+. +.|+.= +++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~------------------Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG------------------VAVFSL------EMSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE------------------EEEEES------SSCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe------------------EEEEeC------CCCHHH
Confidence 45778877789999999999999999999998877543322222 223211 233333
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
- ..++......+++. +-.-+.||.++++|+..|...+.++++.+.|+|...+| .+
T Consensus 89 l---------------~~Rlls~~~~v~~~-----~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i 143 (338)
T 4a1f_A 89 L---------------ALRALSDLTSINMH-----DLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QI 143 (338)
T ss_dssp H---------------HHHHHHHHHCCCHH-----HHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HH
T ss_pred H---------------HHHHHHHhhCCCHH-----HHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HH
Confidence 2 22222222222221 11225799999999999999999999999999865433 34
Q ss_pred HHHHHHh--cC-CcEEEEEc
Q 002236 805 WNVVKRA--KQ-GRAIILTT 821 (949)
Q Consensus 805 ~~~L~~~--~~-g~tIIltT 821 (949)
...++++ +. |..+|++-
T Consensus 144 ~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 144 RLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp HHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEe
Confidence 4444443 23 56666663
No 197
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.65 E-value=1.2e-05 Score=88.77 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=25.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTT 685 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pt 685 (949)
.++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 357789999999999999999999877553
No 198
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.65 E-value=0.00013 Score=83.59 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=50.1
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc
Q 002236 630 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~ 698 (949)
++|++.|++. . ++++|+ +|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..
T Consensus 80 ~~L~~~~~~~------~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 80 EALKEALGGE------A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHTTSS------C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHhCCC------c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 3566677531 1 678887 899999999999999999999999999999999999988765
No 199
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.64 E-value=3.7e-06 Score=86.77 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=47.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC---CCCcceEEE--------cCeecCc--cHHHhhccEEEEcCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYV--------QGLDIRT--DMDRIYTSMGVCPQED 714 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~---~ptsG~I~i--------~G~di~~--~~~~~r~~iG~~pQ~~ 714 (949)
.+.+++|+|++||||||+.++|++.+ .+++|+++. +|.++.. ....+++.+|+.+|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 35789999999999999999999766 789999987 7877653 3445778899998864
No 200
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.61 E-value=2.5e-05 Score=80.43 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=27.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
++|++++|+|||||||||++++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999987
No 201
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.58 E-value=0.00013 Score=80.49 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=73.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC-CCC------CcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGI-TRT------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl-~~p------tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
.+++|+++.|.|++|+||||+...++.. ..| ..+.++++..... .. +.+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~-----------------------~~-~~l 158 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTF-----------------------RW-ERI 158 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-----------------------CH-HHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCC-----------------------CH-HHH
Confidence 6899999999999999999999888764 334 2334555543210 01 111
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh-HHHHHHHHHHHc---CCCcEEEEeCCCCCCCH----
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG-MKRRLSVAISLI---GNPKVVYMDEPSTGLDP---- 798 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGG-qKqRLslA~ALi---~~P~vllLDEPTsGLDp---- 798 (949)
.-.++-.|+.. +++++.+-+ . ...++. +.+.+..+++++ .++++|++|+.++-.+.
T Consensus 159 ~~~~~~~g~~~-------~~~~~~l~~-----~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 159 ENMAKALGLDI-------DNVMNNIYY-----I----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp HHHHHHTTCCH-------HHHHHTEEE-----E----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred HHHHHHhCCCH-------HHHhccEEE-----E----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 11111112211 112222111 1 112333 235567777777 78999999999876532
Q ss_pred ----HHH----HHHHHHHHHh-c-CCcEEEEEcCCHHHH
Q 002236 799 ----ASR----NNLWNVVKRA-K-QGRAIILTTHSMEEA 827 (949)
Q Consensus 799 ----~sr----~~l~~~L~~~-~-~g~tIIltTH~meea 827 (949)
..| .++...|+++ + .|.+||++.|-....
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 261 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecC
Confidence 222 2333334443 3 389999999976554
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.58 E-value=2.4e-05 Score=80.81 Aligned_cols=42 Identities=12% Similarity=0.332 Sum_probs=33.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-------------CCcceEEEcCeec
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITR-------------TTSGTAYVQGLDI 696 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~-------------ptsG~I~i~G~di 696 (949)
+...+|++++|+||||||||||++.|.+..+ |..|+ ++|.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y 68 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEY 68 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccc
Confidence 4445899999999999999999999999875 66676 567664
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.57 E-value=7.5e-06 Score=91.11 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=55.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc
Q 002236 627 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (949)
Q Consensus 627 I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~ 698 (949)
++.+++.+.|+ .+.+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..|++.+-+.|...
T Consensus 31 ie~~~~~~~~~------~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 31 VESRHPRHQAL------STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHCCCHHHHHH------HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred hhcCCchhhhH------HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 44556666664 2568999999999999999999999999999999999999999999888777643
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.55 E-value=1.1e-05 Score=92.89 Aligned_cols=42 Identities=10% Similarity=0.315 Sum_probs=35.0
Q ss_pred CCCcEEEEeCCCCCCCH-HHHHHHHHHHHHh-cCCcEEEEEcCC
Q 002236 782 GNPKVVYMDEPSTGLDP-ASRNNLWNVVKRA-KQGRAIILTTHS 823 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp-~sr~~l~~~L~~~-~~g~tIIltTH~ 823 (949)
.+|++|++||+..-.+. ..+..+...+... ..|+.||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999876654 6788888888875 568899999997
No 205
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.49 E-value=0.00055 Score=71.45 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=41.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCcEEEEEcC-CHHHHHHhcCEEEEEeCCEEEEEcCHHHHHHhcCC
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGRAIILTTH-SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 857 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~---~g~tIIltTH-~meeae~l~drI~Im~~G~l~~~Gs~~~Lk~~~g~ 857 (949)
.+++++|+..+.+.++...++.++.+++... ...+||+.|| |+.+.+.+.+.+.- .....+++.++++.
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~-------~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLRE-------APEDIQDLMDIFGD 183 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------------CHHHHHHHHHHSS
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHh-------chHHHHHHHHHcCC
Confidence 4789999999999999987777777765432 2368888888 33222222221100 01134666677777
Q ss_pred cEE
Q 002236 858 SYV 860 (949)
Q Consensus 858 ~y~ 860 (949)
.|.
T Consensus 184 ~~~ 186 (239)
T 3lxx_A 184 RYC 186 (239)
T ss_dssp SEE
T ss_pred EEE
Confidence 654
No 206
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.48 E-value=0.00019 Score=79.88 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=72.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC--CCC-----CcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGI--TRT-----TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl--~~p-----tsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
.+++|+++.|.|++|+||||+...++.. .++ ..+.++++....- ... .+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~-----------------------~~~-~l 173 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTF-----------------------RPD-RL 173 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCC-----------------------CHH-HH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCC-----------------------CHH-HH
Confidence 6889999999999999999999988874 322 2334455543310 111 11
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHHc----CCCcEEEEeCCCCCCCHH--
Q 002236 727 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISLI----GNPKVVYMDEPSTGLDPA-- 799 (949)
Q Consensus 727 ~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGq-KqRLslA~ALi----~~P~vllLDEPTsGLDp~-- 799 (949)
.-.+.-.|+.. +++++.+.+ . ...++.+ .+.+..++.++ .++++|++|+.++-.++.
T Consensus 174 ~~~~~~~g~~~-------~~~l~~l~~-----~----~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~ 237 (343)
T 1v5w_A 174 RDIADRFNVDH-------DAVLDNVLY-----A----RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS 237 (343)
T ss_dssp HHHHHHTTCCH-------HHHHHTEEE-----E----ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC
T ss_pred HHHHHHcCCCH-------HHHHhceeE-----e----ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhc
Confidence 11111112211 122332211 1 1123332 23444555555 789999999999866442
Q ss_pred ------HH----HHHHHHHHHh-c-CCcEEEEEcCCHHHHH
Q 002236 800 ------SR----NNLWNVVKRA-K-QGRAIILTTHSMEEAE 828 (949)
Q Consensus 800 ------sr----~~l~~~L~~~-~-~g~tIIltTH~meeae 828 (949)
.| .++...|+++ + .|.+||+++|.....+
T Consensus 238 ~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~ 278 (343)
T 1v5w_A 238 GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 278 (343)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCC
Confidence 12 2333344443 3 3899999999876543
No 207
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.46 E-value=6.5e-05 Score=76.67 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=28.5
Q ss_pred EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 652 SLALPSGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 652 Sl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
-=++++|++++|.|++||||||+.++|.+.++
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34577899999999999999999999999864
No 208
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.37 E-value=2.1e-05 Score=93.09 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=44.5
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc-cHHHhhccEEEEcC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQ 712 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ 712 (949)
..+++++++++ +|++++|+||||+|||||+++|++...+..|+|.+.|..... .....++.+|+.+|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~ 163 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPG 163 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCch
Confidence 56788888888 899999999999999999999999999999999888854321 11222345666655
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.27 E-value=0.00083 Score=73.43 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=49.2
Q ss_pred EeEEEEcCCCCCCCccceeee-eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCc
Q 002236 630 DNLRKIYPGRDGNPEKVAVNG-LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 698 (949)
Q Consensus 630 ~nL~K~Y~~~~~~~~~~al~~-lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~ 698 (949)
++|.+.|++. . ++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.|+..
T Consensus 78 ~~l~~~~~~~-----~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 78 DELSNLFGGD-----K---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHTTCS-----C---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHhccc-----c---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4556667531 1 45 788876 99999999999999999999999999989999998888754
No 210
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.26 E-value=0.00086 Score=72.00 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHhc-----CCcEEEEEcCCHH
Q 002236 767 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA----------SRNNLWNVVKRAK-----QGRAIILTTHSME 825 (949)
Q Consensus 767 SGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~----------sr~~l~~~L~~~~-----~g~tIIltTH~me 825 (949)
+++++.|..++.|...+|.+|++||+.+.++.. ....+...+.... .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 356777777888888899999999997765532 2223444444321 2346777888754
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.19 E-value=0.00018 Score=82.63 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=42.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC------------CCcceEEEcCeecCc-cHHHhhccEEEEcCCCCCCCCCCHHHHH
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHL 726 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~------------ptsG~I~i~G~di~~-~~~~~r~~iG~~pQ~~~L~~~lTv~E~L 726 (949)
.++|+|+||+|||||++.|+|... +.+|.+.++|.++.- +....++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 689999999999999999999864 678999999987531 2222344445555655555555555555
Q ss_pred HH
Q 002236 727 LF 728 (949)
Q Consensus 727 ~~ 728 (949)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 212
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.14 E-value=0.00014 Score=71.51 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G 693 (949)
.|++++|+|+|||||||+.++|++.+.+ .++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55554
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.11 E-value=9.5e-05 Score=73.67 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=32.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCeec
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDI 696 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG--~I~i~G~di 696 (949)
++|++++|.|++||||||+.++|.+.+++ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998766 56 566665443
No 214
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.06 E-value=6.1e-05 Score=80.61 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHh-c-CCcEEEEEcCCHHHHHHhcCEEEEE
Q 002236 792 PSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIF 837 (949)
Q Consensus 792 PTsGLDp~sr~~l~~~L~~~-~-~g~tIIltTH~meeae~l~drI~Im 837 (949)
|+++.+......+++.+.+. . +..++.+.+|..++++..++++.-.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999998764 3 3556678899999999998886433
No 215
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.05 E-value=0.00025 Score=77.93 Aligned_cols=131 Identities=13% Similarity=0.216 Sum_probs=79.2
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHH
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 724 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E 724 (949)
...|+++.-.+++|+++.|.|+.|+||||+..-++.-..- .| ..+.|+.= +++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----------------~~vl~~sl------E~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----------------DVVNLHSL------EMGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----------------CEEEEEES------SSCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----------------CeEEEEEC------CCCHHH
Confidence 4578888877999999999999999999998877642110 11 12333221 134333
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHHHH
Q 002236 725 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 804 (949)
Q Consensus 725 ~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTsGLDp~sr~~l 804 (949)
.. +++......+++. ...+.. ..||+++++|+.-|...+.++++++.|+|... + ..+
T Consensus 111 l~---------------~R~~~~~~~i~~~--~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~---~~i 167 (315)
T 3bh0_A 111 NI---------------KRLIVTAGSINAQ--KIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V---NYI 167 (315)
T ss_dssp HH---------------HHHHHHHTTCCHH--HHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---HHH
T ss_pred HH---------------HHHHHHHcCCCHH--HHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---HHH
Confidence 22 1222211122221 111111 23899999999999999999999999998643 3 335
Q ss_pred HHHHHHh-c-CCcE--EEEEcC
Q 002236 805 WNVVKRA-K-QGRA--IILTTH 822 (949)
Q Consensus 805 ~~~L~~~-~-~g~t--IIltTH 822 (949)
.+.++++ + .|.. +|++-|
T Consensus 168 ~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 168 WSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCCeEEEEeC
Confidence 5555543 2 2545 776654
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.00052 Score=73.96 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=27.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCcceE
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I 689 (949)
..+.|.||+|+||||+.+.|++...++.|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5899999999999999999999988777654
No 217
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.00 E-value=0.0003 Score=86.99 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=28.9
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
|.+++|+.+.|.||+|+||||++++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46788999999999999999999999998754
No 218
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.00 E-value=0.0015 Score=70.95 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=26.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
+.+.++..+.|.||+|+||||+.+.|++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3456788999999999999999999998763
No 219
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.99 E-value=0.00037 Score=68.32 Aligned_cols=30 Identities=20% Similarity=0.512 Sum_probs=24.7
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 002236 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (949)
Q Consensus 649 ~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~ 679 (949)
++.++++.+| +.+|+|||||||||++..|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455666655 99999999999999999987
No 220
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.90 E-value=0.0024 Score=71.64 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.3
Q ss_pred ceeeeeE--EEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 646 VAVNGLS--LALPSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 646 ~al~~lS--l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
..|+.+- =.+++|+++.|.|++|+|||||...++..
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455552 14889999999999999999999777654
No 221
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.87 E-value=0.00024 Score=71.95 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.6
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
..+++++|+..++++ ++++|++|+|||||++.+++
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 468999999988885 68999999999999999997
No 222
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.87 E-value=1.6e-05 Score=87.16 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=36.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhcCEE
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME-EAEALCDRL 834 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~me-eae~l~drI 834 (949)
++++|+++|| ...|++.....+.+.+.+...+..+|++|++.+ ....+.+|.
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred CCceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 3678999999 788999999999998887655555666666554 233344443
No 223
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.85 E-value=0.00035 Score=73.33 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=33.0
Q ss_pred eeeeeEEEEe---CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 002236 647 AVNGLSLALP---SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (949)
Q Consensus 647 al~~lSl~v~---~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G 693 (949)
-|.++++.+. +|.+++|.|++||||||+++.|...+.+ .+.+....
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 4666777766 8999999999999999999999999887 66665443
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.83 E-value=0.00067 Score=68.03 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=20.5
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
.+++++++..++. .++++|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4889999998888 568999999999999999997
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.83 E-value=0.00016 Score=74.19 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=37.4
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCeec
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDI 696 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG--~I~i~G~di 696 (949)
+.+++|.++.|.|++||||||+.+.|.+.+.|+.| .++++|.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 33567899999999999999999999999988888 888876443
No 226
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.76 E-value=0.00079 Score=68.20 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 825 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~me 825 (949)
++|.+|++||.-. +|+.....+.+.+.+...+..+|++|++.+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 5688999999765 788888777777765445678888888754
No 227
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.74 E-value=0.00021 Score=80.68 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=47.1
Q ss_pred cEEEEeEEEEcCCCCCCCccceee--------------eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVN--------------GLSLALPSGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~--------------~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.+.++||+..|+. ++..++ |+.+.+.+||..+|+||+|+|||||+++|++...
T Consensus 133 ri~Fe~ltp~yP~-----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHAN-----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCC-----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCC-----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4678999999985 356888 8999999999999999999999999999988653
No 228
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.73 E-value=0.0018 Score=67.56 Aligned_cols=146 Identities=15% Similarity=0.069 Sum_probs=73.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecCccHHHhhccEEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 733 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~~~~~~~r~~iG~~pQ~~~L~~~lTv~E~L~~~~~l~ 733 (949)
.+.+|+.+.+.||+||||||++..+........|. ...++++.+.+......++.+++.-. .
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---------------~~~~~~l~~~p~~~la~q~~~~~~~~---~ 133 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---------------AAECNIVVTQPRRISAVSVAERVAFE---R 133 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---------------GGGCEEEEEESSHHHHHHHHHHHHHT---T
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---------------CCceEEEEeccchHHHHHHHHHHHHH---h
Confidence 34679999999999999999988764321111110 12345555554332222333433211 1
Q ss_pred CCCchhHHHHHHHHHHHcCCC--CCCc---ccccCCCCChhHHHHHHHHHHHcCCCcEEEEeCCCC-CCCHHHHHHHHHH
Q 002236 734 NLKGPALTQAVEESLKSVNLF--HGGV---ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNV 807 (949)
Q Consensus 734 g~~~~~~~~~v~~~L~~l~L~--~~~~---~~~~~~~LSGGqKqRLslA~ALi~~P~vllLDEPTs-GLDp~sr~~l~~~ 807 (949)
+..- -..+|.. .+.. .+..+--.+.|+..+. ..+.+.+-+++++||.-. ++|.......++.
T Consensus 134 ~~~~----------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 134 GEEP----------GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp TCCT----------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred cccc----------CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 1000 0000000 0000 0111112345665554 334688999999999966 6777766545554
Q ss_pred HHHhcC-CcEEEEE-cCCHHHHHH
Q 002236 808 VKRAKQ-GRAIILT-THSMEEAEA 829 (949)
Q Consensus 808 L~~~~~-g~tIIlt-TH~meeae~ 829 (949)
+..... -++|++| |.+.+...+
T Consensus 202 i~~~~~~~~~il~SAT~~~~~~~~ 225 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATIDTSMFCE 225 (235)
T ss_dssp HHHHCTTSEEEEEECSSCCHHHHH
T ss_pred HHhhCCCCeEEEEecCCCHHHHHH
Confidence 444333 3455553 555444433
No 229
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.72 E-value=0.001 Score=65.61 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999965
No 230
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.59 E-value=0.00023 Score=79.78 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=37.3
Q ss_pred cEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCe
Q 002236 626 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 694 (949)
Q Consensus 626 ~I~v~nL~K~Y~~~~~~~~~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~ 694 (949)
.+.++||.+.|++ +.++++++|+| +|+|++|+|||||++.|.|...+..|.+...+.
T Consensus 17 ~v~~~~l~~~~~~------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 17 YVGFANLPNQVHR------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ----CCHHHHHHT------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred eEEeccchHHhCC------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 4777888888863 56889999988 999999999999999999987776666544443
No 231
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.56 E-value=0.0026 Score=64.27 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999876543
No 232
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0016 Score=64.20 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 233
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.43 E-value=0.00078 Score=67.41 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=33.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-EcC
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-VQG 693 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~-i~G 693 (949)
...+|.+++|.|++||||||+.+.|++.+.+..|.+. +++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3457999999999999999999999999887777663 443
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.43 E-value=0.0027 Score=61.87 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
.++|+|++|+|||||++.|+|...+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~ 29 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVY 29 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee
Confidence 5899999999999999999997543
No 235
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.39 E-value=0.0017 Score=66.72 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=24.0
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 002236 650 GLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (949)
Q Consensus 650 ~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~ 679 (949)
+.++++.+ .+++|+|||||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 45566665 499999999999999999875
No 236
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.38 E-value=0.0034 Score=68.41 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=29.8
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHHHHHHHh-cCCcEEEEEcC
Q 002236 782 GNPKVVYMDEPST-GLDPASRNNLWNVVKRA-KQGRAIILTTH 822 (949)
Q Consensus 782 ~~P~vllLDEPTs-GLDp~sr~~l~~~L~~~-~~g~tIIltTH 822 (949)
.++++|++||+-. .-|+..+..+...+... ..|+.||++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999855 33557888888888764 45666666655
No 237
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.38 E-value=0.0016 Score=74.07 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=34.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC-----------CCCCcceEEEcCe
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGI-----------TRTTSGTAYVQGL 694 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl-----------~~ptsG~I~i~G~ 694 (949)
.+..|..+||+|+||+|||||++.|+|. ..|..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456788999999999999999999998 6788899888764
No 238
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.35 E-value=0.0021 Score=73.82 Aligned_cols=172 Identities=14% Similarity=0.068 Sum_probs=91.6
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-eE-EEcCeecCccHHHhhccE----EEEcCCCCCCC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TA-YVQGLDIRTDMDRIYTSM----GVCPQEDLLWE 718 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG-~I-~i~G~di~~~~~~~r~~i----G~~pQ~~~L~~ 718 (949)
...|+.+.-.+++|+++.|.|++|+||||+..-++.......| .| ++... ....++.+++ +-++.+...-
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE---~~~~~l~~R~~~~~~~i~~~~l~~- 262 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE---MPAAQLTLRMMCSEARIDMNRVRL- 262 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS---SCHHHHHHHHHHHHTTCCTTTCCG-
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC---CCHHHHHHHHHHHHcCCCHHHHhC-
Confidence 4567777767999999999999999999999877765433223 23 33221 1111111110 0001100000
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCcEEEEeCCCCCC
Q 002236 719 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL 796 (949)
Q Consensus 719 ~lTv~E~L~~~~~l~g~~~~~~~~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi--~~P~vllLDEPTsGL 796 (949)
+ .+...+ .+++.+.++.+.-.+ -+.+ ....+|..+-+ +.++.+. .+++++++|..+.-.
T Consensus 263 -----------g---~l~~~~-~~~~~~a~~~l~~~~-l~i~-d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 263 -----------G---QLTDRD-FSRLVDVASRLSEAP-IYID-DTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp -----------G---GCCHHH-HHHHHHHHHHHHTSC-EEEE-CCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCB
T ss_pred -----------C---CCCHHH-HHHHHHHHHHHhcCC-EEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcC
Confidence 0 111111 223333333332110 0122 23456766653 3455554 589999999987544
Q ss_pred CH------HHH----HHHHHHHHHh-cC-CcEEEEEcCCHH-------------------HHHHhcCEEEEEeC
Q 002236 797 DP------ASR----NNLWNVVKRA-KQ-GRAIILTTHSME-------------------EAEALCDRLGIFVD 839 (949)
Q Consensus 797 Dp------~sr----~~l~~~L~~~-~~-g~tIIltTH~me-------------------eae~l~drI~Im~~ 839 (949)
++ .+| ..+...|+.+ ++ +.+||+++|--. .++..||.|+.|..
T Consensus 324 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 324 GPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 32 122 3444555553 33 899999998311 25678899988864
No 239
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.33 E-value=0.002 Score=65.86 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
++..+.|.||.|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999987544
No 240
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.32 E-value=0.00065 Score=68.92 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=28.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeec
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di 696 (949)
..+++|.|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4589999999999999999998865 5566665544
No 241
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.0035 Score=68.92 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.+..+.|.||.|+||||+++.+.....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999987653
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.10 E-value=0.0026 Score=64.33 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 002236 660 CFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~G 680 (949)
+++|.|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 243
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.00 E-value=0.0062 Score=68.25 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=27.5
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 679 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~ 679 (949)
.+++..+++.+| ++.|.|+|||||||++..|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 447788888775 99999999999999998875
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.00 E-value=0.0031 Score=63.21 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=26.5
Q ss_pred eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 650 GLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 650 ~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
++|++..+|.+++|.|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.80 E-value=0.004 Score=63.42 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=26.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
..+|.+++|+||+||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45799999999999999999999988663
No 246
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.78 E-value=0.015 Score=61.67 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+.++..+.|.||.|+||||+.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998764
No 247
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.75 E-value=0.0047 Score=61.28 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRTT 685 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~pt 685 (949)
-++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
No 248
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.73 E-value=0.061 Score=61.91 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=27.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~ 690 (949)
++.++.++|++|+||||++.-|+..+....-+|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4679999999999999999999987665333443
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.70 E-value=0.0056 Score=66.92 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
.+++|+++.|.|++|+||||+...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999987774
No 250
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.67 E-value=0.0029 Score=66.88 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=33.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeecC
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 697 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di~ 697 (949)
..+++.++.|.|++||||||+.+.|...+. .|.+.++|..++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 345678999999999999999999998764 356777876553
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.66 E-value=0.0038 Score=62.94 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=29.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCee
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLD 695 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~pt---sG~I~i~G~d 695 (949)
-.+++|.|++|||||||++.|.+.+++. -|.+..++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 3666666544
No 252
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.62 E-value=0.0016 Score=72.87 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=34.0
Q ss_pred ceeeeeEEEEeCCcE--EEEECCCCCcHHHHHHHHhCCCC
Q 002236 646 VAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 646 ~al~~lSl~v~~Gei--~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478888889999999 99999999999999999998653
No 253
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.60 E-value=0.0029 Score=65.98 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.+|.+++|.|++||||||+.++|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999873
No 254
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.59 E-value=0.0029 Score=62.81 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.54 E-value=0.069 Score=59.94 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=23.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
.+++|+++.|.|+.|+|||||..-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 579999999999999999999876653
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.43 E-value=0.0015 Score=80.76 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=28.9
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 651 lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++.+.+|+.+.|.||+|+|||||.+.|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 45677899999999999999999999999876
No 257
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.43 E-value=0.03 Score=53.81 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=30.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-cEEEEEcCCHHHH
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQG-RAIILTTHSMEEA 827 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g-~tIIltTH~meea 827 (949)
+..+|++||.- .|++..+..+.+.+.....+ +.|..|+.++++.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHH
Confidence 34689999984 68999888888888544433 4555555566654
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.36 E-value=0.0059 Score=64.19 Aligned_cols=45 Identities=29% Similarity=0.481 Sum_probs=29.0
Q ss_pred eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCee
Q 002236 647 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (949)
Q Consensus 647 al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~d 695 (949)
.++++++.+++| +.|.||+|+||||+.+.|++..... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 344455555555 8899999999999999999876421 35555543
No 259
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.03 E-value=0.079 Score=60.28 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.+.+++.|.|++||||||+.+.|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999999763
No 260
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.01 E-value=0.0071 Score=67.98 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=39.3
Q ss_pred CCCcEEEEeCCCCCC---CHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHH
Q 002236 782 GNPKVVYMDEPSTGL---DPASRNNLWNVVKRAK-QGRAIILTTHSMEEAE 828 (949)
Q Consensus 782 ~~P~vllLDEPTsGL---Dp~sr~~l~~~L~~~~-~g~tIIltTH~meeae 828 (949)
+.|.++++||-=.=+ +|...+.+.+.+++.+ .|..++++||+++++.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 568999999997777 4778888888888865 5999999999998653
No 261
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.01 E-value=0.17 Score=58.83 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
..|+.+.-.+++|+++.|.|+.|+||||+..-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 35565544689999999999999999999766653
No 262
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.97 E-value=0.026 Score=59.12 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=38.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCC----------HHHHHHhcCEEEEEe
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHS----------MEEAEALCDRLGIFV 838 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~----------meeae~l~drI~Im~ 838 (949)
+++++|++||--. |++. +.+.+..+ +.|..||++-|+ ..++..+||+|.-|.
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999965 6654 33344442 458999999992 567778999998875
No 263
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.94 E-value=0.016 Score=65.12 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=30.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC-----------CCCCCcceEEEcC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIG-----------ITRTTSGTAYVQG 693 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~G-----------l~~ptsG~I~i~G 693 (949)
|-.++|+|.+|+|||||++.|+| -..|+.|.+.+.|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4467888888766
No 264
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.91 E-value=0.023 Score=56.50 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHh-CC----CCCCcc
Q 002236 660 CFGMLGPNGAGKTTFISMMI-GI----TRTTSG 687 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~-Gl----~~ptsG 687 (949)
-++|+|+.|+|||||++.++ |. ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 47899999999999996554 44 556655
No 265
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.85 E-value=0.014 Score=57.70 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|++|+|||||++.+++-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999863
No 266
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.70 E-value=0.0013 Score=69.18 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=31.3
Q ss_pred cCCCcEEEEeCCCCC-CCHHHHHHHHHHHHH-hcCCcEEEEEcC-----CHHHH
Q 002236 781 IGNPKVVYMDEPSTG-LDPASRNNLWNVVKR-AKQGRAIILTTH-----SMEEA 827 (949)
Q Consensus 781 i~~P~vllLDEPTsG-LDp~sr~~l~~~L~~-~~~g~tIIltTH-----~meea 827 (949)
..+|+++++||+-.- .+.......|+.+.. +..|..++.|+| ++++.
T Consensus 82 ~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~ 135 (228)
T 2r8r_A 82 KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQ 135 (228)
T ss_dssp HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHH
T ss_pred hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHH
Confidence 358999999998642 333333445555554 567889999999 55554
No 267
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.58 E-value=0.096 Score=58.16 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+...+.|.||.|+||||+.+.|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999998754
No 268
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.53 E-value=0.11 Score=51.54 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 824 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~m 824 (949)
+++.+|++||. ..+++.....+.+.+.....+..+|++|+..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 46899999995 4577877777887777655566777777765
No 269
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.49 E-value=0.091 Score=54.67 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
....+.|.||.|+||||+.+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999998743
No 270
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.44 E-value=0.087 Score=58.17 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.5
Q ss_pred EeCCcEEEEECCCCCcHHHHH-HHHhCCC
Q 002236 655 LPSGECFGMLGPNGAGKTTFI-SMMIGIT 682 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLl-k~L~Gl~ 682 (949)
+++| ++-|.||.|+|||||. .++....
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 7789 9999999999999994 4444433
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.39 E-value=0.02 Score=55.56 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+++|.|+.||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 272
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.36 E-value=0.0094 Score=62.93 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
+.-+++|.||+||||||+.+.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999843
No 273
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.27 E-value=0.18 Score=53.90 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.4
Q ss_pred CCcEEEEeCCCC--------CCCHHHHHHHHHHHHHhcCCcEEEEEcCCH
Q 002236 783 NPKVVYMDEPST--------GLDPASRNNLWNVVKRAKQGRAIILTTHSM 824 (949)
Q Consensus 783 ~P~vllLDEPTs--------GLDp~sr~~l~~~L~~~~~g~tIIltTH~m 824 (949)
++.+|++||--. ..++.....+.+.+.....+..+|++|+.-
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 467999999742 346777777777776655566777777654
No 274
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.21 E-value=0.068 Score=70.50 Aligned_cols=40 Identities=28% Similarity=0.560 Sum_probs=31.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE-EEcC
Q 002236 654 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQG 693 (949)
Q Consensus 654 ~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I-~i~G 693 (949)
.+++|+++.|.|++|+|||||...++.......|.+ ++.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 599999999999999999999998887654433433 4444
No 275
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.17 E-value=0.024 Score=57.99 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
++-+++|.|++||||||+.++|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 276
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.02 E-value=0.035 Score=63.84 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHcCCCcEEEEeCCC-CCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHHHH
Q 002236 769 GMKRRLSVAISLIGNPKVVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 827 (949)
Q Consensus 769 GqKqRLslA~ALi~~P~vllLDEPT-sGLDp~sr~~l~~~L~~~~~g~tIIltTH~meea 827 (949)
.+++....+...+.+++++++.... .|+.+.. ..+++.+++ .++.+|++-+-+|..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 3666666777777788887776554 4555543 456665543 467777777766644
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.96 E-value=0.028 Score=54.21 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 002236 660 CFGMLGPNGAGKTTFISMM 678 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L 678 (949)
+++|.|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.95 E-value=0.026 Score=55.98 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
+++.++.|.|+.||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.92 E-value=0.03 Score=55.24 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
|.++.|.|+.||||||+.+.|+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999763
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.91 E-value=0.032 Score=54.71 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
|.++.|.|+.||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999987654
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.89 E-value=0.027 Score=56.38 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCee
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 695 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~d 695 (949)
..+++|.|+.||||||+.++|+.. |-.+++.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 358999999999999999999985 666665433
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.83 E-value=0.0085 Score=60.69 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=24.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceE
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRTTSGTA 689 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I 689 (949)
+++|.|++||||||+++.|...+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998776543333
No 283
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.82 E-value=0.03 Score=60.52 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G 693 (949)
+|.++.|.||+||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999986542 36677765
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.43 E-value=0.042 Score=55.08 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.+|-+++|.|+.||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999876
No 285
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.38 E-value=0.04 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998754
No 286
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.33 E-value=0.035 Score=58.79 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.+++|.||+||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998744
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.28 E-value=0.028 Score=55.49 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
.++.++.|.|+.||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999984
No 288
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.067 Score=51.08 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 289
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.15 E-value=0.11 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+.-.++++|+.|+|||||++.+++-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998753
No 290
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.07 E-value=0.04 Score=54.25 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++.|.|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998643
No 291
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.07 E-value=0.072 Score=58.42 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=32.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 825 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~me 825 (949)
++++|+++||. -.|++.+...+.+.+.+...+..+|++|++.+
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 46799999995 45788887777777765445677888888764
No 292
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.07 E-value=0.046 Score=58.70 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.04 E-value=0.044 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 002236 661 FGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+.|.||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.02 E-value=0.049 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~G 680 (949)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 295
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.02 E-value=0.052 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.+.++.|.|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999754
No 296
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.00 E-value=0.09 Score=65.28 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=26.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQG 693 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~ptsG-~I~i~G 693 (949)
..+.|.||+|+|||++.+.|........+ -+.++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47889999999999999999987754433 344443
No 297
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.93 E-value=0.06 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.|-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998764
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.93 E-value=0.055 Score=54.29 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999875543
No 299
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.91 E-value=0.13 Score=59.16 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=29.6
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
...|+.+.-.+++|+++.|.|+.|+||||+.--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 346666665799999999999999999999866654
No 300
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.85 E-value=0.13 Score=49.26 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=27.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCcEEEEEcC
Q 002236 784 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTH 822 (949)
Q Consensus 784 P~vllLDEPTsGLDp~sr~~l~~~L~~~~-~g~tIIltTH 822 (949)
..+|++||.- .|++..+..+.+.+.+.. .+..+|.+|+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 4689999965 678888888888887653 3444555554
No 301
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.81 E-value=0.053 Score=53.88 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++.+++|.|+.||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999753
No 302
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.81 E-value=0.049 Score=54.68 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++++|+.|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999874
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.79 E-value=0.057 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
+.+++|.|+.||||||+.+.|+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999874
No 304
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.79 E-value=0.046 Score=53.98 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.++++|+.|+|||||++.|+|-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 688999999999999999998653
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.75 E-value=0.034 Score=55.79 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
.+++|.|++|||||||+..|.+.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999887653
No 306
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.75 E-value=0.056 Score=54.45 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.+|.+++|.|+.||||||+.+.|.-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999753
No 307
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.68 E-value=0.049 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
-++++|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 368999999999999999998543
No 308
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.61 E-value=0.15 Score=56.31 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=25.2
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 653 LALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 653 l~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
-.+++|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999999998875
No 309
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.61 E-value=0.059 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.++|-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999854
No 310
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.60 E-value=0.06 Score=57.17 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|..|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
No 311
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.57 E-value=0.061 Score=54.21 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++|-+++|.|+.||||||+.+.|.-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999853
No 312
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.44 E-value=0.63 Score=50.83 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+..-+.|.||.|+||||+.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44568899999999999999999865
No 313
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.43 E-value=0.28 Score=51.73 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
..+.|.||.|+||||+.+.++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46788999999999999999874
No 314
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.37 E-value=0.064 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|.|-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 315
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.36 E-value=0.059 Score=54.04 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+++|.|++||||||+.++|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 316
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.34 E-value=0.094 Score=57.72 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
...+++..+.+ .|.-+.|.|++|+||||+...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 45788888888 789999999999999999998887
No 317
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.34 E-value=0.26 Score=66.05 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=33.3
Q ss_pred ceeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCe
Q 002236 646 VAVNGLSL--ALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGL 694 (949)
Q Consensus 646 ~al~~lSl--~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~pts-G~I~i~G~ 694 (949)
..|+.+-= .+++|+++-|.||.|+|||||...++....... .-+++++.
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 34555532 499999999999999999999877765433222 23444443
No 318
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.33 E-value=0.054 Score=60.86 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 002236 661 FGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~Gl 681 (949)
+||+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 319
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.32 E-value=0.042 Score=53.53 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~G 680 (949)
=.++++|++|+|||||++.+++
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 320
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.32 E-value=0.051 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=18.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++.++.|.|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999997543
No 321
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.24 E-value=0.069 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 002236 661 FGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
++++|+.|+|||||++.++|...
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHHhccC
Confidence 68999999999999999987543
No 322
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.18 E-value=0.063 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998863
No 323
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.18 E-value=0.056 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 324
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.13 E-value=0.064 Score=50.84 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.+.|-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998754
No 325
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.11 E-value=0.082 Score=50.38 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998743
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.09 E-value=0.064 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 327
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.02 E-value=0.071 Score=56.07 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=33.4
Q ss_pred HHHHHHH---cCCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-c---CCcEEEEEcCCHHH
Q 002236 774 LSVAISL---IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K---QGRAIILTTHSMEE 826 (949)
Q Consensus 774 LslA~AL---i~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~---~g~tIIltTH~mee 826 (949)
-.+.+++ ..+++++|+--+.+.++.. .+.+++.+++. . .++.+|+++|-++.
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 93 EERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 3444444 3788888877666666554 45566666653 2 26899999998764
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.00 E-value=0.078 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998654
No 329
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.95 E-value=0.065 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++++|+.|+|||||++.|.|-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 330
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.91 E-value=0.067 Score=52.46 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.|.|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999998864
No 331
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.87 E-value=0.071 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 332
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.83 E-value=0.072 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988754
No 333
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.81 E-value=0.079 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++.|.|+.||||||+.+.|.-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999997644
No 334
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.80 E-value=0.12 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999988753
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.78 E-value=0.067 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 336
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.70 E-value=0.097 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 337
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.69 E-value=0.091 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 002236 661 FGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++++|+.|+|||||++.++|-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999854
No 338
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.69 E-value=0.095 Score=49.92 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 002236 661 FGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998643
No 339
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.68 E-value=0.069 Score=51.00 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 002236 661 FGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++++|+.|+|||||++.+.|-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998754
No 340
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.67 E-value=0.077 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999998643
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.67 E-value=0.058 Score=53.67 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 655 LPSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 655 v~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++++.+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999997643
No 342
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.66 E-value=0.69 Score=61.23 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=28.0
Q ss_pred ceeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 646 VAVNGLSL--ALPSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 646 ~al~~lSl--~v~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
..||.+-= .+++|+++-|.|+.|+|||||.--++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45666532 489999999999999999999876654
No 343
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.66 E-value=0.078 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
-++++|+.|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3689999999999999999986543
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.63 E-value=0.1 Score=53.40 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+|-.+.|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999997643
No 345
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.59 E-value=0.11 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999875
No 346
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.52 E-value=0.081 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998643
No 347
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.52 E-value=0.081 Score=50.41 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999863
No 348
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.40 E-value=0.084 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|+|-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999863
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.36 E-value=0.097 Score=53.86 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=22.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 350
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.36 E-value=0.084 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
No 351
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.35 E-value=0.097 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998743
No 352
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.34 E-value=0.14 Score=49.68 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 002236 660 CFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~G 680 (949)
-++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999983
No 353
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.31 E-value=0.47 Score=51.20 Aligned_cols=43 Identities=23% Similarity=0.385 Sum_probs=32.3
Q ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCcEEEEEcCCHH
Q 002236 782 GNPKVVYMDEPSTGLD-PASRNNLWNVVKRAKQGRAIILTTHSME 825 (949)
Q Consensus 782 ~~P~vllLDEPTsGLD-p~sr~~l~~~L~~~~~g~tIIltTH~me 825 (949)
++++++++||.- .|. ......+.+.+.+...+..+|++|+..+
T Consensus 104 ~~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 104 GRQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp SCEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 378999999984 344 6677777777776666678888888765
No 354
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.29 E-value=0.086 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 355
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.26 E-value=0.089 Score=50.39 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999763
No 356
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.15 E-value=0.093 Score=49.98 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 002236 661 FGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 661 ~gLLG~NGAGKTTLlk~L~G 680 (949)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999976
No 357
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.13 E-value=0.093 Score=55.01 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|+.|||||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 358
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.10 E-value=0.12 Score=50.38 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|.|+.||||||+-++|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999753
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.05 E-value=0.11 Score=52.70 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 002236 660 CFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~G 680 (949)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 360
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.05 E-value=0.048 Score=63.14 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=35.9
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 690 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~ 690 (949)
..+++.+ ..+-+|+..+|+|++|+|||||+++|++......|.+.
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 4577777 77889999999999999999999999876554344443
No 361
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.04 E-value=0.32 Score=53.36 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=30.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 825 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~me 825 (949)
++.+|+++||.= .|...+...+.+.+.+-..+..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 578999999973 4667666666665544334567788888865
No 362
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.03 E-value=0.096 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.00 E-value=0.11 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997643
No 364
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.98 E-value=0.097 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998744
No 365
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.94 E-value=0.12 Score=54.64 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++.++.|.|+.||||||+.+.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999864
No 366
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.93 E-value=0.11 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|+.|+|||||++.|+|-.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999853
No 367
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.89 E-value=0.1 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.|.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4789999999999999999864
No 368
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.88 E-value=0.11 Score=55.12 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|+.|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
No 369
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.88 E-value=0.12 Score=50.71 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
=-++++|+.|+|||||++.+++-.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999999743
No 370
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.85 E-value=0.38 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.3
Q ss_pred CcEEEE--ECCCCCcHHHHHHHHhCCC
Q 002236 658 GECFGM--LGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 658 Gei~gL--LG~NGAGKTTLlk~L~Gl~ 682 (949)
+..+.| .|+.|.|||||++.+....
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 446666 8999999999999987643
No 371
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.85 E-value=0.12 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
+..+++|.|+.||||||+.+.|+-.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 372
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.78 E-value=0.1 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++++|+.|+|||||++.|++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 373
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.77 E-value=0.096 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 374
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.76 E-value=0.14 Score=51.48 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.+-+++|.|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 375
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.73 E-value=0.11 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 376
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.71 E-value=0.1 Score=55.47 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++|+|+.|+|||||++.|.|--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 377
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.68 E-value=0.12 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 378
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.60 E-value=0.11 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.58 E-value=0.11 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.|++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998865
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.58 E-value=0.13 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 381
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.58 E-value=0.3 Score=49.77 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=37.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHH-hcCCcEEEEEcCCH----------HHHHHhcCEEEEEe
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSM----------EEAEALCDRLGIFV 838 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~-~~~g~tIIltTH~m----------eeae~l~drI~Im~ 838 (949)
+.++|++||--- +|+.. .+.+++ ...|..||++.+++ .+..++||.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999544 66543 445555 34589999999865 77888999997764
No 382
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.56 E-value=0.13 Score=54.82 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=23.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCcce
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGT 688 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~ 688 (949)
-.++++|.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 588999999999999999999977654443
No 383
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.56 E-value=0.12 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.+++|.|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 384
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.56 E-value=0.14 Score=49.60 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
+++|.|+.||||||+.+.|.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 385
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.53 E-value=0.54 Score=51.73 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=31.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC--------CCcceEEEcCeecCc
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITR--------TTSGTAYVQGLDIRT 698 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~--------ptsG~I~i~G~di~~ 698 (949)
++..+-|.||.|+|||++.+.++..+. |.--.|+|+|..+.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 567888999999999999999987653 122467778776554
No 386
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.53 E-value=0.28 Score=52.30 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 825 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~me 825 (949)
++++++++||. -.|+......+.+.+.+...+..+|++|++.+
T Consensus 106 ~~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 106 GKHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp TCCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 35899999995 34666777777777766555677888887754
No 387
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.52 E-value=0.12 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 388
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=90.52 E-value=0.11 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|..|+|||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.47 E-value=0.11 Score=53.07 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
++..+.|.|+.||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999754
No 390
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.45 E-value=0.11 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 391
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.40 E-value=0.11 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.|++-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999873
No 392
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.38 E-value=0.12 Score=50.23 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 393
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.30 E-value=0.11 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.++|-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 394
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.27 E-value=0.15 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
No 395
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.26 E-value=0.12 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 396
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.26 E-value=0.13 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|++-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
No 397
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.25 E-value=0.14 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 398
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.22 E-value=0.15 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.14 E-value=0.13 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.+++|.|+.||||||+-+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 400
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.11 E-value=0.15 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++|+|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
No 401
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.08 E-value=0.08 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.|+|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 402
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.01 E-value=0.13 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++|+|..|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 403
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.99 E-value=0.18 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 404
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.95 E-value=0.15 Score=50.75 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
-++++|+.|+|||||++.+.|-..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4789999999999999999986543
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.94 E-value=0.14 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 406
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.94 E-value=0.14 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++++|+.|+|||||++.+++-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999963
No 407
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.87 E-value=0.14 Score=49.65 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.87 E-value=0.13 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.|++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
No 409
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.86 E-value=0.13 Score=51.05 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 410
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.81 E-value=0.14 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 411
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.76 E-value=0.17 Score=54.10 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=31.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCHH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 825 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~me 825 (949)
++++++++||. -.|++.....+.+.+.+...+..+|++|.+.+
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 47899999996 45677777778777776555667777776654
No 412
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.75 E-value=0.13 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 413
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.71 E-value=0.22 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999888753
No 414
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.71 E-value=0.14 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.69 E-value=0.17 Score=52.12 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 416
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.65 E-value=0.15 Score=50.24 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 417
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.63 E-value=0.16 Score=51.95 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.++|-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998853
No 418
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.62 E-value=0.13 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++|+|+.|+|||||++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 46899999999999999998754
No 419
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.61 E-value=0.17 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|+.|||||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
No 420
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.58 E-value=0.19 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
++-+++|.|+.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999974
No 421
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.57 E-value=0.39 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
..-+.|.||.|+|||++.+.|+...
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4458899999999999999998754
No 422
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.54 E-value=0.15 Score=50.56 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 423
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.53 E-value=0.14 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.53 E-value=0.15 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 425
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.52 E-value=0.15 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|++-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 426
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.48 E-value=0.14 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999999753
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.41 E-value=0.18 Score=50.78 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
-++|+|+.|+|||||++.|++-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 368999999999999999987543
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.37 E-value=0.18 Score=50.04 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 429
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.34 E-value=0.16 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.|+|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999854
No 430
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.33 E-value=0.19 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.-++||.|..||||||+.++|.-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999864
No 431
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.33 E-value=0.16 Score=50.63 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999998754
No 432
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.32 E-value=0.12 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 433
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.30 E-value=0.16 Score=54.68 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.++++|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
No 434
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.29 E-value=0.17 Score=52.93 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=21.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.+|-++.+.|+.||||||+.+.|.-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999986553
No 435
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.26 E-value=0.2 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 436
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.26 E-value=0.19 Score=52.78 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++||.|+.||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997743
No 437
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.06 E-value=0.18 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 438
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.06 E-value=0.17 Score=50.56 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998643
No 439
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.00 E-value=0.87 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++..+.|.||.|+|||++.+.|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999997653
No 440
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.90 E-value=0.13 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=9.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 441
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.88 E-value=0.6 Score=49.18 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCcEEEEEcCC----------HHHHHHhcCEEEEEe
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHS----------MEEAEALCDRLGIFV 838 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~-~~g~tIIltTH~----------meeae~l~drI~Im~ 838 (949)
++.++|++||----.| ++++++.+ ..|..||++.++ +.+..++||.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 7889999999977644 56665553 478999999999 566778999998774
No 442
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.81 E-value=0.23 Score=51.33 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRT 684 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~p 684 (949)
.+|-++.+-|+.||||||+.+.|.-.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999765543
No 443
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.80 E-value=0.43 Score=55.50 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=55.9
Q ss_pred cccccCCCCChhHHHHHHHHHHHc--C---------------CCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Q 002236 758 VADKQAGKYSGGMKRRLSVAISLI--G---------------NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 820 (949)
Q Consensus 758 ~~~~~~~~LSGGqKqRLslA~ALi--~---------------~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIlt 820 (949)
+.++..+++||||+|..-+|++.. . .=.+++|||. +-||....+...++++++ |-=+|++
T Consensus 372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliia 448 (483)
T 3euj_A 372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIA 448 (483)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEE
T ss_pred eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEE
Confidence 566778999999999766655543 1 2268999999 999999999999999864 4446666
Q ss_pred cCCHHHHHHhcCEEEEEe
Q 002236 821 THSMEEAEALCDRLGIFV 838 (949)
Q Consensus 821 TH~meeae~l~drI~Im~ 838 (949)
|=+ .+...+|.++.+.
T Consensus 449 tP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 449 APE--NISPERGTTYKLV 464 (483)
T ss_dssp ESS--SCCCSSSEEEECC
T ss_pred Ccc--hhhhccCceEEEE
Confidence 655 4455567666554
No 444
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.77 E-value=0.13 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=19.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++-++||-|+.||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998643
No 445
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.68 E-value=0.17 Score=50.79 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 446
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.61 E-value=0.19 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999763
No 447
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.37 E-value=0.21 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.28 E-value=0.22 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999753
No 449
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.23 E-value=0.078 Score=60.84 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCeec
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 696 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G~di 696 (949)
.+++++|++|+||||+...|++.+.....+|.+-..|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58999999999999999999998765444565544443
No 450
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.10 E-value=0.24 Score=50.68 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
|-.+.|.|+.||||||+.+.|+-.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5578999999999999999997643
No 451
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.10 E-value=0.2 Score=53.24 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.++++|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999653
No 452
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.08 E-value=0.2 Score=49.39 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 453
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.05 E-value=0.2 Score=50.09 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998743
No 454
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.04 E-value=0.22 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999854
No 455
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.03 E-value=0.29 Score=47.22 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+..+.|.||.|+||||+++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999887754
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.00 E-value=0.25 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|..|+|||||++.++|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999743
No 457
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.91 E-value=0.27 Score=51.83 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
+|.++.+.|+.||||||+.+.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999976554
No 458
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=87.77 E-value=0.13 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|+|-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998643
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.76 E-value=0.27 Score=52.59 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=24.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G 693 (949)
.++.|.|++||||||+.+.|.-.+ .|-..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEecc
Confidence 478999999999999999998622 24455543
No 460
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.71 E-value=0.31 Score=50.33 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++..+.|.|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999997543
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.65 E-value=0.29 Score=50.64 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
+|.++.+-|+.||||||..+.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987554
No 462
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.63 E-value=0.49 Score=63.41 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=30.7
Q ss_pred cceeeeeE--EEEeCCcEEEEECCCCCcHHHHHHHHh
Q 002236 645 KVAVNGLS--LALPSGECFGMLGPNGAGKTTFISMMI 679 (949)
Q Consensus 645 ~~al~~lS--l~v~~Gei~gLLG~NGAGKTTLlk~L~ 679 (949)
...|+++. ..+++|+++.|.|+.|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45678887 579999999999999999999998776
No 463
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=87.52 E-value=0.13 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=4.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998865
No 464
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.50 E-value=0.26 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=87.41 E-value=0.19 Score=49.38 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 002236 660 CFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~G 680 (949)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999965
No 466
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.21 E-value=0.26 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++|+|+.|+|||||++.+++-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 467
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=87.12 E-value=0.25 Score=49.55 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37899999999999999997643
No 468
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.07 E-value=0.33 Score=50.46 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceE
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 689 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I 689 (949)
.+|.++.+-|+.||||||..+.|.-.+.. .|.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 46899999999999999999999887665 3443
No 469
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.01 E-value=0.26 Score=49.97 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++|+|+.|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67899999999999998887643
No 470
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.96 E-value=0.29 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~G 680 (949)
.+..++.|+||.||||+|..+.|+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
No 471
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.44 E-value=1.2 Score=46.27 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHH-hcCCcEEEEEcC----------CHHHHHHhcCEEEEEe
Q 002236 783 NPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTH----------SMEEAEALCDRLGIFV 838 (949)
Q Consensus 783 ~P~vllLDEPTsGLDp~sr~~l~~~L~~-~~~g~tIIltTH----------~meeae~l~drI~Im~ 838 (949)
+.++|++||--- +|+.. + +.+++ ...|..||++-+ -+.+..++||.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI---V-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTH---H-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHH---H-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999876 66542 2 55555 346899999999 5677888999998775
No 472
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.40 E-value=1 Score=54.94 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.+.|.||.|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 473
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.39 E-value=0.34 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999854
No 474
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.33 E-value=0.4 Score=50.09 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.+|-++.+-|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3588999999999999999999986554
No 475
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.28 E-value=0.57 Score=47.38 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=31.1
Q ss_pred cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 002236 645 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 693 (949)
Q Consensus 645 ~~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i~G 693 (949)
+..++..-+++ .|.-+.|.|++|+|||||...|.. .|.-.+.+
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~-----rG~~lvaD 46 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID-----RGHQLVCD 46 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH-----TTCEEEES
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH-----cCCeEecC
Confidence 44566666555 488999999999999999887764 35544443
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.26 E-value=0.24 Score=49.75 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 002236 660 CFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~G 680 (949)
.++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988874
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.22 E-value=0.37 Score=49.95 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
+|.+++|-|..||||||+.+.|.-.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366889999999999999999987653
No 478
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=86.14 E-value=0.32 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
-++++|+.|+|||||++.+++-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 479
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=86.13 E-value=0.29 Score=54.31 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=25.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 691 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG~I~i 691 (949)
.-+++|+|+.|+|||||++.|++.+....-+|.+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~v 112 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAV 112 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 3479999999999999999998765433333433
No 480
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.88 E-value=0.38 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.+++|.||+||||||+.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
No 481
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=85.56 E-value=0.49 Score=50.97 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITRTTSG 687 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ptsG 687 (949)
+-.++++|..|+|||||++.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999997644333
No 482
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.35 E-value=0.38 Score=46.50 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
+..+.|.||.|+||||+++.++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999887553
No 483
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=85.34 E-value=0.56 Score=52.05 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.8
Q ss_pred eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 649 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 649 ~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
+.+.++++----++|+|..|||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 456666665556899999999999999999874
No 484
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=85.31 E-value=0.37 Score=54.58 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCcEEEE
Q 002236 742 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 789 (949)
Q Consensus 742 ~~v~~~L~~l~L~~~~~~~~~~~~LSGGqKqRLslA~ALi~~P~vllL 789 (949)
+.+.++++.++... ...++|.++.+++.-...+...|-++++
T Consensus 180 ~~~~~~l~~l~~~~------~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 180 NDVWEAMHKLNLPE------DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHHTTCCS------CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHhccCC------ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 35667777777642 1358899998888877777789999887
No 485
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.23 E-value=0.47 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 658 GECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 658 Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
+.+++|.||+|+|||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998655
No 486
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.18 E-value=0.31 Score=51.35 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 656 PSGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 656 ~~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++-+++|-|+-||||||+.+.|...+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467799999999999999999998766
No 487
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=85.07 E-value=0.48 Score=47.61 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHH-hcCCcEEEEEcCCHH----------HHHHhcCEEEEEe
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSME----------EAEALCDRLGIFV 838 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~-~~~g~tIIltTH~me----------eae~l~drI~Im~ 838 (949)
+++++|++||--. +|+. +.+.|++ ..+|..||++.++.+ ....+||.|.-|.
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 4678999999743 5543 4455554 345889999888654 2334588886554
No 488
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.07 E-value=0.55 Score=51.16 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=29.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEcCCH
Q 002236 782 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 824 (949)
Q Consensus 782 ~~P~vllLDEPTsGLDp~sr~~l~~~L~~~~~g~tIIltTH~m 824 (949)
++.+|+|+||+= .|...+...+.+.|.+-.....+|++|++.
T Consensus 81 ~~~kvviIdead-~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 81 YTRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred CCceEEEeccHH-HhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 457899999984 466667666666665544566778888875
No 489
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.90 E-value=0.49 Score=52.54 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 002236 657 SGECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 657 ~Gei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
++.++.|+||.|+|||||-..|+--+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999866
No 490
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.83 E-value=0.69 Score=47.75 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.3
Q ss_pred ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 646 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 646 ~al~~lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
..++..-+.+ .|..+.|.||.|+|||||...|..-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566666665 5789999999999999999988754
No 491
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.62 E-value=0.61 Score=47.70 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=37.0
Q ss_pred HHcCCCcEEEEeCCCC----CCCHHHHHHHHHHHHH-hc-CCcEEEEEcCCHHH----------HHHhcCEEEEEe
Q 002236 779 SLIGNPKVVYMDEPST----GLDPASRNNLWNVVKR-AK-QGRAIILTTHSMEE----------AEALCDRLGIFV 838 (949)
Q Consensus 779 ALi~~P~vllLDEPTs----GLDp~sr~~l~~~L~~-~~-~g~tIIltTH~mee----------ae~l~drI~Im~ 838 (949)
.--.+++++++|--+. .-|+...+++...|++ ++ .|.++++++|-.+. .+.+||-|+.+.
T Consensus 131 ~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 131 VKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 3446899999995432 1144445555666655 34 38999999986422 345678777664
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.46 E-value=0.49 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 002236 659 ECFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 659 ei~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
.++.|.||+||||||+-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998755
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=84.44 E-value=0.21 Score=49.94 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 002236 660 CFGMLGPNGAGKTTFISMMIG 680 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~G 680 (949)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 478999999999999988875
No 494
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.80 E-value=0.56 Score=48.16 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
++.|+||.||||+|.-+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
No 495
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=83.70 E-value=0.47 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl 681 (949)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 496
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.65 E-value=0.16 Score=53.25 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=22.6
Q ss_pred eEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 002236 651 LSLALPSGECFGMLGPNGAGKTTFISMMIGI 681 (949)
Q Consensus 651 lSl~v~~Gei~gLLG~NGAGKTTLlk~L~Gl 681 (949)
+....++| +.|.||.|+||||+.+.|++.
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33344445 678999999999999999874
No 497
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=83.33 E-value=0.34 Score=49.00 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHH-HhCC
Q 002236 660 CFGMLGPNGAGKTTFISM-MIGI 681 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~-L~Gl 681 (949)
.++++|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999998 6553
No 498
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=83.23 E-value=0.59 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGITR 683 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~~ 683 (949)
.++++|+.|+|||||++.|+|...
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 579999999999999999999543
No 499
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=83.09 E-value=0.16 Score=50.70 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 002236 660 CFGMLGPNGAGKTTFISMMIGIT 682 (949)
Q Consensus 660 i~gLLG~NGAGKTTLlk~L~Gl~ 682 (949)
-++++|+.|+|||||++.|++-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 500
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=82.56 E-value=0.76 Score=47.12 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=52.2
Q ss_pred HHHHHHHHHHc--CCCcEEEEeCCCCC--CCHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhcCEEEEEeCC
Q 002236 771 KRRLSVAISLI--GNPKVVYMDEPSTG--LDPASRNNLWNVVKRAKQGRAIILTTHSM-EEAEALCDRLGIFVDG 840 (949)
Q Consensus 771 KqRLslA~ALi--~~P~vllLDEPTsG--LDp~sr~~l~~~L~~~~~g~tIIltTH~m-eeae~l~drI~Im~~G 840 (949)
++.+..|+..+ ++.++|||||.+.. ++-.....+.+.|.+.-++..||+|++.. ++..++||-|--|..-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 45566677777 77899999999762 33344456888887655678999999886 4777889999888654
Done!