Query 002239
Match_columns 948
No_of_seqs 268 out of 771
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:15:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 100.0 2E-135 6E-140 1234.8 53.9 576 364-945 1-593 (770)
2 3eh2_A Protein transport prote 100.0 8E-134 3E-138 1220.0 53.8 565 375-945 15-589 (766)
3 3eh1_A Protein transport prote 100.0 2E-128 6E-133 1170.3 50.0 534 399-945 34-570 (751)
4 1m2v_B SEC24, protein transpor 100.0 2E-128 7E-133 1186.5 50.5 572 353-945 134-723 (926)
5 1pcx_A Protein transport prote 100.0 2E-127 5E-132 1171.6 50.9 546 391-945 49-607 (810)
6 2nut_A Protein transport prote 100.0 2E-111 6E-116 1026.2 38.4 522 393-945 6-594 (769)
7 1m2o_A SEC23, protein transpor 100.0 1E-110 5E-115 1018.7 41.8 510 402-945 6-596 (768)
8 2yrc_A Protein transport prote 99.5 8.4E-15 2.9E-19 122.9 3.3 44 453-496 6-51 (59)
9 4fx5_A VON willebrand factor t 99.4 3.9E-10 1.3E-14 130.6 34.5 339 533-937 77-451 (464)
10 3ibs_A Conserved hypothetical 98.9 2.2E-08 7.5E-13 102.5 17.3 174 531-771 9-213 (218)
11 3n2n_F Anthrax toxin receptor 98.6 1.1E-06 3.9E-11 87.2 17.9 155 533-753 7-168 (185)
12 1shu_X Anthrax toxin receptor 98.6 1.8E-06 6.3E-11 85.5 18.9 152 533-749 6-162 (182)
13 1atz_A VON willebrand factor; 98.5 1.1E-06 3.8E-11 88.3 15.4 156 533-755 5-171 (189)
14 1q0p_A Complement factor B; VO 98.5 1.5E-06 5E-11 88.9 16.4 172 532-754 14-205 (223)
15 4b4t_W RPN10, 26S proteasome r 98.5 3E-07 1E-11 99.2 11.4 148 535-746 5-163 (268)
16 4hqo_A Sporozoite surface prot 98.5 1.2E-06 4E-11 93.7 15.4 164 533-754 18-192 (266)
17 4hqf_A Thrombospondin-related 98.5 1.1E-06 3.6E-11 94.5 15.1 166 532-756 20-197 (281)
18 1ijb_A VON willebrand factor; 98.5 2.7E-06 9.3E-11 86.8 16.8 173 533-770 13-194 (202)
19 2b2x_A Integrin alpha-1; compu 98.5 1.2E-06 4.2E-11 90.5 14.0 171 533-771 22-211 (223)
20 1mf7_A Integrin alpha M; cell 98.5 1E-06 3.4E-11 88.9 12.4 174 533-772 5-190 (194)
21 1v7p_C Integrin alpha-2; snake 98.4 3.7E-06 1.3E-10 85.4 16.5 171 533-771 6-195 (200)
22 2x31_A Magnesium-chelatase 60 98.4 1.4E-08 4.8E-13 101.9 -2.1 177 532-771 4-187 (189)
23 1pt6_A Integrin alpha-1; cell 98.4 2.7E-06 9.2E-11 87.2 14.9 172 533-772 7-197 (213)
24 1n3y_A Integrin alpha-X; alpha 98.4 2.3E-06 7.8E-11 86.1 13.7 173 532-771 8-193 (198)
25 2odp_A Complement C2; C3/C5 co 98.4 2.8E-06 9.7E-11 98.2 16.3 180 532-770 8-209 (509)
26 1rrk_A Complement factor B; BB 98.4 5.8E-06 2E-10 95.1 17.5 176 534-754 2-191 (497)
27 2x5n_A SPRPN10, 26S proteasome 98.3 4.4E-06 1.5E-10 85.7 12.0 145 535-744 4-159 (192)
28 1mjn_A Integrin alpha-L; rossm 98.3 1.6E-05 5.5E-10 79.5 15.7 163 534-769 3-177 (179)
29 3hrz_D Complement factor B; se 98.1 1.9E-06 6.5E-11 104.1 7.2 178 532-754 242-433 (741)
30 1jey_B KU80; double-strand DNA 98.0 2E-05 6.9E-10 93.2 10.9 147 534-729 8-169 (565)
31 3zqk_A VON willebrand factor; 97.9 5.7E-05 2E-09 76.8 12.7 152 532-756 20-181 (199)
32 2xgg_A Microneme protein 2; A/ 97.9 0.0002 6.8E-09 71.4 15.9 142 533-737 17-168 (178)
33 3k6s_A Integrin alpha-X; cell 97.7 4.5E-05 1.5E-09 96.8 8.5 160 533-756 130-302 (1095)
34 1jey_A KU70; double-strand DNA 97.2 0.013 4.6E-07 69.8 20.5 153 534-730 36-208 (609)
35 2ww8_A RRGA, cell WALL surface 96.8 0.003 1E-07 78.5 10.8 146 531-676 222-394 (893)
36 3fcs_B Integrin beta-3; beta p 96.6 0.11 3.9E-06 62.8 21.7 234 533-792 111-369 (690)
37 3rag_A Uncharacterized protein 96.3 0.011 3.8E-07 62.7 9.8 94 532-659 133-227 (242)
38 3t3p_B Integrin beta-3; integr 95.6 1.6 5.6E-05 50.3 24.0 238 532-792 110-369 (472)
39 3v4v_B Integrin beta-7; cell a 95.3 0.9 3.1E-05 52.8 20.6 271 532-824 131-425 (503)
40 3vi3_B Integrin beta-1; beta p 95.3 0.38 1.3E-05 55.3 17.1 237 533-792 122-376 (454)
41 3k6s_B Integrin beta-2; cell r 95.3 0.054 1.8E-06 65.5 10.7 204 533-752 104-324 (687)
42 1yvr_A RO autoantigen, 60-kDa 94.8 0.027 9.2E-07 66.1 6.0 106 530-674 365-474 (538)
43 2iue_A Pactolus I-domain; memb 91.9 2 6.8E-05 44.6 13.8 115 534-680 4-125 (212)
44 2nvo_A RO sixty-related protei 79.5 2 6.7E-05 50.5 6.1 104 530-674 359-470 (535)
45 2j9u_B VPS36, vacuolar protein 66.3 1.3 4.5E-05 38.6 0.2 19 477-495 16-34 (76)
46 2a20_A Regulating synaptic mem 63.6 1.8 6.2E-05 36.0 0.6 27 456-486 33-59 (62)
47 1gh9_A 8.3 kDa protein (gene M 43.9 7.1 0.00024 33.8 1.0 30 456-491 4-33 (71)
48 3rag_A Uncharacterized protein 41.7 20 0.00068 37.9 4.3 44 709-752 28-75 (242)
49 2avu_E Flagellar transcription 41.4 5.2 0.00018 40.9 -0.2 31 452-485 130-161 (192)
50 4gat_A Nitrogen regulatory pro 39.8 10 0.00034 32.4 1.3 31 455-486 8-38 (66)
51 2zet_C Melanophilin; complex, 39.8 7.3 0.00025 38.4 0.6 33 457-489 86-119 (153)
52 2gmg_A Hypothetical protein PF 39.3 8.8 0.0003 35.6 1.0 36 455-495 66-101 (105)
53 1pft_A TFIIB, PFTFIIBN; N-term 36.5 34 0.0012 26.9 3.9 29 456-487 5-33 (50)
54 2csz_A Synaptotagmin-like prot 35.7 14 0.00048 32.3 1.6 31 457-487 43-73 (76)
55 6rxn_A Rubredoxin; electron tr 34.8 17 0.00059 28.8 1.9 9 478-486 30-38 (46)
56 2vut_I AREA, nitrogen regulato 34.5 11 0.00037 29.5 0.7 30 456-486 1-30 (43)
57 1zbd_B Rabphilin-3A; G protein 33.3 17 0.00059 35.0 2.0 33 457-489 73-109 (134)
58 1b3t_A Protein (nuclear protei 32.3 46 0.0016 31.7 4.6 31 553-583 113-144 (147)
59 1e8j_A Rubredoxin; iron-sulfur 31.6 24 0.00083 28.5 2.3 10 478-487 3-12 (52)
60 1s24_A Rubredoxin 2; electron 30.3 12 0.00041 33.6 0.3 32 455-486 34-76 (87)
61 1dx8_A Rubredoxin; electron tr 29.9 22 0.00075 30.6 1.9 31 456-486 7-48 (70)
62 2hgo_A CASSIICOLIN; toxin, dis 29.1 23 0.00077 24.3 1.4 26 458-484 2-27 (27)
63 1vq8_Z 50S ribosomal protein L 27.6 31 0.0011 30.6 2.5 29 456-488 27-55 (83)
64 6rxn_A Rubredoxin; electron tr 27.4 14 0.0005 29.2 0.3 13 477-489 3-15 (46)
65 2v3b_B Rubredoxin 2, rubredoxi 25.3 26 0.0009 28.7 1.5 9 478-486 36-44 (55)
66 2kn9_A Rubredoxin; metalloprot 25.0 26 0.00089 31.0 1.5 9 478-486 60-68 (81)
67 1x0t_A Ribonuclease P protein 24.9 22 0.00076 33.5 1.1 35 457-491 66-107 (120)
68 1gnf_A Transcription factor GA 24.1 16 0.00053 29.0 -0.1 30 456-486 4-33 (46)
69 1yuz_A Nigerythrin; rubrythrin 23.9 21 0.00073 36.5 0.8 26 456-488 171-196 (202)
70 1yk4_A Rubredoxin, RD; electro 23.8 20 0.00067 29.1 0.4 10 477-486 34-43 (52)
71 2k0a_A PRE-mRNA-splicing facto 23.7 25 0.00086 32.4 1.2 41 457-497 30-76 (109)
72 4hc9_A Trans-acting T-cell-spe 22.5 22 0.00075 33.4 0.5 30 456-486 5-34 (115)
73 4fpp_A Phosphotransferase; fou 21.0 3.1E+02 0.011 27.8 9.1 24 644-667 210-233 (247)
74 4rxn_A Rubredoxin; electron tr 20.4 26 0.00087 28.7 0.4 10 477-486 35-44 (54)
75 3j21_g 50S ribosomal protein L 20.1 28 0.00095 28.2 0.6 27 455-489 13-39 (51)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=1.8e-135 Score=1234.85 Aligned_cols=576 Identities=37% Similarity=0.704 Sum_probs=552.0
Q ss_pred CCCCCCcCCC-------cceeccCCCCCCCCCCCCCCceeecCCCCCCCCceeeeccccCCChhhhhhcCCccEEEEccC
Q 002239 364 QIPRPVPSST-------VVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPL 436 (948)
Q Consensus 364 ~iP~P~~~~~-------~~~~~t~~~~~~~~PP~~tt~~~~~D~gN~sP~fiR~T~n~iP~t~~ll~~~~LPLgivVqPf 436 (948)
|||+|+++.+ ..+|.|...+ ..||+++++|++.|+|||+|+|||+|||+||.|++++++++||||++|+||
T Consensus 1 ~~ps~~~~~~~~~~~~~~~~~~t~~~~--~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl 78 (770)
T 3efo_B 1 AMGSPIQVIENDRASRGGQVYATNTRG--QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPF 78 (770)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEETTSSS--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTT
T ss_pred CCCchHHHHHHHHHhcCCCCccCCCCC--CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcC
Confidence 6899987743 3478887544 469999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceecccCCCCCccCCCCCceeccCceEecCCCeEEEccCCCCCCCCcccccCCCCCCCCCCCCCCCCccCc
Q 002239 437 ALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRG 516 (948)
Q Consensus 437 a~~~~~e~pVPvvd~g~~~pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~g 516 (948)
+++.++|.++|+||+++.+|+||+||||||||||+|+++|++|+||||++.|++|.+|+++++.+|+|.|+++||||++|
T Consensus 79 ~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~ 158 (770)
T 3efo_B 79 ATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLG 158 (770)
T ss_dssp CCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCS
T ss_pred CCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccC
Confidence 99888777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccccc--cCCCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-----CCceEEEEEeCCeEEEEecC
Q 002239 517 TVEFVATKEYM--VRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-----PRTMVGIATFDSTIHFYNLK 589 (948)
Q Consensus 517 tVEfvap~eY~--~R~p~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~-----~rtrVGiITFds~VhfynL~ 589 (948)
+|||++|+||+ .|+++||+|+||||||.+++++|+++++|++|+++|+.||++ .|++|||||||++||||||+
T Consensus 159 tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~ 238 (770)
T 3efo_B 159 SYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK 238 (770)
T ss_dssp EEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC
T ss_pred ceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCC
Confidence 99999999999 589999999999999999999999999999999999999964 36899999999999999999
Q ss_pred cCCCCceEeeccCccccccCccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHh--cCCEEEEE
Q 002239 590 RALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TGGKLLVF 667 (948)
Q Consensus 590 ~~l~qpqmlVvsDldd~FvPl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF 667 (948)
..+++++|+||+|++|+|+|++++|||+++||++.|+++||+|+.+|.+++..++|+|+||++|+++|+. .||||++|
T Consensus 239 ~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F 318 (770)
T 3efo_B 239 SNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIF 318 (770)
T ss_dssp TTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CcccCceEEEecccccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999888999999999999999985 79999999
Q ss_pred eccCCC-CCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcc
Q 002239 668 QSVLPS-VGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG 746 (948)
Q Consensus 668 ~sg~Pt-~GpG~L~~red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG 746 (948)
++|+|+ +|||+|+.|++.. .++++||+++++++++|||+||++|+++||+||||+++.+|+||++|+.|++.|||
T Consensus 319 ~s~lP~t~GpG~l~~r~~~~----~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG 394 (770)
T 3efo_B 319 HSSLPTAEAPGKLKNRDDKK----LVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGG 394 (770)
T ss_dssp ECSCCCSSSTTCCCCCCCCC----CSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTC
T ss_pred ecCCCCcCCCcccccccccc----ccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCc
Confidence 999887 8999999998766 67789999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCchhhHHHHHHHHhccCCccccceeEEEeCCCceEeeeecccccCCCCceeecCCCCCceEEEEEEecCC
Q 002239 747 QVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDK 826 (948)
Q Consensus 747 ~v~~y~~F~~~~d~~kL~~dL~r~ltr~~g~da~mrVR~S~GL~V~~~~Gnf~~rst~~~~lp~id~dtSia~el~~d~~ 826 (948)
.+|+|++|+.+.|.++|.+||+|.+++++||||+||||||+||+|+++||||+.+++++|+|+++|+|++|+|+|+|+++
T Consensus 395 ~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~ 474 (770)
T 3efo_B 395 TLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDK 474 (770)
T ss_dssp CEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSC
T ss_pred eEEEecCCcchhHHHHHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEEEecCCcEEEEEEcCcccccCCHhHHHhhCCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 002239 827 LQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNA 906 (948)
Q Consensus 827 L~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~lpVts~l~~vf~saD~eAi~~llaK~a~~~~~~~~l~daR~~L~~~lv~i 906 (948)
+.++..+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++
T Consensus 475 l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~ 554 (770)
T 3efo_B 475 LSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHM 554 (770)
T ss_dssp CBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEEEEcCCCCEEEEEEEechhhcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 98777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCceecchhcchHHHHHHHHhcCccc
Q 002239 907 LVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHS 945 (948)
Q Consensus 907 L~~YRk~ca~~~s~gqLiLPesLKlLPlyilaLlKs~~~ 945 (948)
|.+|||+|+..++++||+|||+||+||+||++|+||.++
T Consensus 555 l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l 593 (770)
T 3efo_B 555 LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVL 593 (770)
T ss_dssp HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGG
T ss_pred HHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhh
Confidence 999999998877889999999999999999999999986
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=7.8e-134 Score=1220.00 Aligned_cols=565 Identities=40% Similarity=0.742 Sum_probs=539.6
Q ss_pred ceeccCCCCCCCCCCCCCCceeecCCCCCCCCceeeeccccCCChhhhhhcCCccEEEEccCCCCCCCCCCceecccCCC
Q 002239 375 VLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDM 454 (948)
Q Consensus 375 ~~~~t~~~~~~~~PP~~tt~~~~~D~gN~sP~fiR~T~n~iP~t~~ll~~~~LPLgivVqPfa~~~~~e~pVPvvd~g~~ 454 (948)
.+|.|...+ ..||+++|+|++.|+|||+|+|||+|||+||.|++++++++||||++|+||+++.+.|+++|+||+++.
T Consensus 15 ~~f~t~~~~--~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~ 92 (766)
T 3eh2_A 15 EPFVTGVRG--QVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES 92 (766)
T ss_dssp SEEETTSTT--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred CCcccCCCC--CCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCC
Confidence 468887644 469999999999999999999999999999999999999999999999999998887888999999888
Q ss_pred CCccCCCCCceeccCceEecCCCeEEEccCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEecccccc--CCCC
Q 002239 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMV--RDPM 532 (948)
Q Consensus 455 ~pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~~--R~p~ 532 (948)
+|+||+||||||||||+|+++|++|+||||++.|++|.+|+++++.+|+|.|+++||||++|+|||++|+||+. |+++
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~ 172 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPS 172 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 8899
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-----CCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-----PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~-----~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~F 607 (948)
||+|+||||||.+++++|+++++|++|+++|+.||++ ++++|||||||++||||||+.++++++|+|++|++|+|
T Consensus 173 pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f 252 (766)
T 3eh2_A 173 PPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMF 252 (766)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCC
T ss_pred CCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChhhhc
Confidence 9999999999999999999999999999999999965 36899999999999999999988899999999999999
Q ss_pred cCccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHh--cCCEEEEEeccCCC-CCccccccccc
Q 002239 608 TPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TGGKLLVFQSVLPS-VGIGALSAREA 684 (948)
Q Consensus 608 vPl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF~sg~Pt-~GpG~L~~red 684 (948)
+|++++|||+++||++.|+++||+|+.+|.+++..++|+|+||++|+++|+. .||||++|++|+|+ .|||+|+.|++
T Consensus 253 ~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~ 332 (766)
T 3eh2_A 253 VPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDD 332 (766)
T ss_dssp CCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCC
T ss_pred cccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCcccccccc
Confidence 9999999999999999999999999999998888999999999999999985 69999999999887 79999999987
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEEEeCCCCCCchhhHHH
Q 002239 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLY 764 (948)
Q Consensus 685 ~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~~F~~~~d~~kL~ 764 (948)
.. .++++||+++++++++|||+||++|+++||+||||+++.+|+||++|+.|++.|||.+|+|++|+.++|.++|.
T Consensus 333 ~~----~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~ 408 (766)
T 3eh2_A 333 RK----LINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFL 408 (766)
T ss_dssp GG----GTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred cc----cCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHH
Confidence 65 67788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCccccceeEEEeCCCceEeeeecccccCCCCceeecCCCCCceEEEEEEecCCCCCCCceeEEEEEEEEec
Q 002239 765 NDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTV 844 (948)
Q Consensus 765 ~dL~r~ltr~~g~da~mrVR~S~GL~V~~~~Gnf~~rst~~~~lp~id~dtSia~el~~d~~L~~~~~~yIQ~AlLYT~~ 844 (948)
+||+|.+++++||||+||||||+||+|+++||||+.+++++|+|+++|+|++|+|+|+|++++.++..+|||+|++||+.
T Consensus 409 ~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~ 488 (766)
T 3eh2_A 409 SDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSC 488 (766)
T ss_dssp HHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECT
T ss_pred HHHHHHhhhcceeeEEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCCCCCCcEEEEEEEEeEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987789999999999999
Q ss_pred CCcEEEEEEcCcccccCCHhHHHhhCCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCCCcee
Q 002239 845 YGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLI 924 (948)
Q Consensus 845 ~GeRRIRV~Tl~lpVts~l~~vf~saD~eAi~~llaK~a~~~~~~~~l~daR~~L~~~lv~iL~~YRk~ca~~~s~gqLi 924 (948)
+|+|||||||++++|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++|++|||+|+..++.+||+
T Consensus 489 ~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~ 568 (766)
T 3eh2_A 489 AGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLI 568 (766)
T ss_dssp TSCEEEEEEEEEEEEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------CCCC
T ss_pred CCCEEEEEEEEeeEecCCHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777889999
Q ss_pred cchhcchHHHHHHHHhcCccc
Q 002239 925 LPEALKLLPLYTLGKYYNVHS 945 (948)
Q Consensus 925 LPesLKlLPlyilaLlKs~~~ 945 (948)
|||+||+||+||++|+||.++
T Consensus 569 lp~~lkllP~~~~~L~Ks~~l 589 (766)
T 3eh2_A 569 LPECMKLLPVYLNCVLKSDVL 589 (766)
T ss_dssp CCGGGTTHHHHHHHHHTSTTT
T ss_pred cCHHHHHHHHHHHHHHccHhh
Confidence 999999999999999999986
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=1.7e-128 Score=1170.35 Aligned_cols=534 Identities=37% Similarity=0.682 Sum_probs=500.4
Q ss_pred CCCCCCCCceeeeccccCCChhhhhhcCCccEEEEccCCCCCCCCCCceecccCCCCCccCCCCCceeccCceEecCCCe
Q 002239 399 DMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRR 478 (948)
Q Consensus 399 D~gN~sP~fiR~T~n~iP~t~~ll~~~~LPLgivVqPfa~~~~~e~pVPvvd~g~~~pvRC~rCrAYINPf~~f~d~G~~ 478 (948)
++|||+|+|||+|||+||.|++++++++||||++|+||++.. ++|+|++ .+|+||+||||||||||+|.+ +++
T Consensus 34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~~--~~p~RC~rCrayiNPf~~f~~-~~~ 106 (751)
T 3eh1_A 34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVITS--NTIVRCRSCRTYINPFVSFID-QRR 106 (751)
T ss_dssp HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEECC--SCCCBCTTTCCBCCTTCEESS-SSE
T ss_pred cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccCC--CCCCcccCccCEeCCceEEec-CCE
Confidence 489999999999999999999999999999999999999863 3898875 469999999999999999976 599
Q ss_pred EEEccCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHH
Q 002239 479 FICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSA 558 (948)
Q Consensus 479 W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av~sG~l~~v~~s 558 (948)
|+||||+..|++|.+|+++. ..++|.|.++||||++|||||++|+||++|+++||+||||||||.+++++|+++++|++
T Consensus 107 w~Cn~C~~~N~~P~~y~~~~-~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~s 185 (751)
T 3eh1_A 107 WKCNLCYRVNDVPEEFMYNP-LTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQS 185 (751)
T ss_dssp EECTTTCCEEECCGGGC----------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred EEcccccCCCCCCHHHhccc-ccccccCcccCchhccceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHH
Confidence 99999999999999997532 23456799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCccccceeehHHhHHHHHHHHhhccccccC
Q 002239 559 ISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQN 638 (948)
Q Consensus 559 I~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~ 638 (948)
|+++|+.||++.|++|||||||++||||||++++++++|+||+|++|+|+|++++|||+++||++.|+++||+|+++|.+
T Consensus 186 l~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~ 265 (751)
T 3eh1_A 186 LLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN 265 (751)
T ss_dssp HHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred HHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHHHHHHhcCCEEEEEeccCCCCCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhc
Q 002239 639 NRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEY 718 (948)
Q Consensus 639 ~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~ 718 (948)
++++++|+|+||++|+.+|+..||||++|++|+||+|||+|+.|++.+ ..+++||+++++++++||++||++|+++
T Consensus 266 ~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~~~----~~~~~ke~~~~~~a~~fY~~la~~~~~~ 341 (751)
T 3eh1_A 266 TRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDPN----QRSSTKVVQHLGPATDFYKKLALDCSGQ 341 (751)
T ss_dssp CSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCCSC----GGGGSSSCTTCSCSCSHHHHHHHHHHHT
T ss_pred CCCCccchHHHHHHHHHHhhcCCCEEEEEecCCCCCCCCccccccccc----cCCCchhhhhhcchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998765 3445678889999999999999999999
Q ss_pred CeEEEEEEccCccccccccccccccCcceEEEeCCCCCCc---hhhHHHHHHHHhccCCccccceeEEEeCCCceEeeee
Q 002239 719 QVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALS---DPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYH 795 (948)
Q Consensus 719 gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~~F~~~~---d~~kL~~dL~r~ltr~~g~da~mrVR~S~GL~V~~~~ 795 (948)
||+||||+++.+|+|+++|+.|++.|||.+|+|++|+.+. |.++|.+||+|.+++++||||+||||||+||+|+++|
T Consensus 342 ~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~ 421 (751)
T 3eh1_A 342 QTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFH 421 (751)
T ss_dssp TEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEE
T ss_pred CceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccceEEEEEecCCeEEEEee
Confidence 9999999999999999999999999999999999999764 3579999999999999999999999999999999999
Q ss_pred cccccCCCCceeecCCCCCceEEEEEEecCCCCCCCceeEEEEEEEEecCCcEEEEEEcCcccccCCHhHHHhhCCHHHH
Q 002239 796 GNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQ 875 (948)
Q Consensus 796 Gnf~~rst~~~~lp~id~dtSia~el~~d~~L~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~lpVts~l~~vf~saD~eAi 875 (948)
|||+.+++++|+++++|+|++|+|+|+|++++.++..+|||+|++||+.+|||||||||++++|++++.++|+++|+||+
T Consensus 422 G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~ 501 (751)
T 3eh1_A 422 GNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAA 501 (751)
T ss_dssp SSSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHH
T ss_pred CCeEeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEeeecCCCCEEEEEEEecccccCCHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCCCceecchhcchHHHHHHHHhcCccc
Q 002239 876 FTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHS 945 (948)
Q Consensus 876 ~~llaK~a~~~~~~~~l~daR~~L~~~lv~iL~~YRk~ca~~~s~gqLiLPesLKlLPlyilaLlKs~~~ 945 (948)
+++|+|+|+++++++++.|+|+||+++|+++|++|||+|+.+ ..+||+|||+||+||+||++|+||.++
T Consensus 502 ~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~-~~~~l~lpe~lkllP~~~~~L~Ks~~~ 570 (751)
T 3eh1_A 502 ICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNL-QHSALMAPSSLKLFPLYVLALLKQKAF 570 (751)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC------CCEEEGGGTTHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccC-CCccccCcHHHHHHHHHHHHHHccHhh
Confidence 999999999999999999999999999999999999999654 467999999999999999999999875
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=2e-128 Score=1186.52 Aligned_cols=572 Identities=29% Similarity=0.547 Sum_probs=533.5
Q ss_pred CCCCCCCCCCC-CCCCCCcCCCcceeccCCCCCCCCCCC----CCCceeecCCCCCCCCceeeeccccCCChhhhhhcCC
Q 002239 353 PMPASSKIDPQ-QIPRPVPSSTVVLYDTREGNQANPPPP----ATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGM 427 (948)
Q Consensus 353 ~~~~~~~idp~-~iP~P~~~~~~~~~~t~~~~~~~~PP~----~tt~~~~~D~gN~sP~fiR~T~n~iP~t~~ll~~~~L 427 (948)
+.++...+|.- ++|+++.+... +||+ +++.|+..|+|||+|+|||+|||+||.+++++++++|
T Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~~------------ppp~~~~~~~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~l 201 (926)
T 1m2v_B 134 PMNQLYPIDLLTELPPPITDLTL------------PPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKL 201 (926)
T ss_dssp CCCCCCEEETTTSCSCCCSGGGS------------CCCCCCCCGGGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTC
T ss_pred CcccceeeehhccCCCCCcccCC------------CCCCCCCCCCcccccccCCCCCCCceecccccCCCCHHHHHhCCC
Confidence 45777788884 44887765431 3333 3589999999999999999999999999999999999
Q ss_pred ccEEEEccCCCCCCCCCCceecccCCCCCccCCCCCceeccCceEecCCCeEEEccCCCCCCCCcccccCCCCCCCCCCC
Q 002239 428 QLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDA 507 (948)
Q Consensus 428 PLgivVqPfa~~~~~e~pVPvvd~g~~~pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~ 507 (948)
||||+|+||+++.++|+++|+++. .+|+||+||||||||||+|+++|++|+||||++.|++|.+|+ ++.+|+|.|+
T Consensus 202 Plg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~~Y~--~~~~~~~~d~ 277 (926)
T 1m2v_B 202 PFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMD--QSDPNDPKSR 277 (926)
T ss_dssp CCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGGT--TTSTTCGGGG
T ss_pred CeEEEEecCCCcccCCCCCCccCC--CCCCccCCccCEecCceEEeCCCCEEEccCCCCCCCCchhhc--cccccCcccc
Confidence 999999999998777778999875 359999999999999999999999999999999999999999 5888999999
Q ss_pred CCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEE
Q 002239 508 DDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFY 586 (948)
Q Consensus 508 ~~rPEL~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~Vhfy 586 (948)
++||||+++||||++++||++|++.+++||||||||.+++++|+|+++|++|+++|+.||+ +++++|||||||++||||
T Consensus 278 ~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y 357 (926)
T 1m2v_B 278 YDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYF 357 (926)
T ss_dssp GGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEE
T ss_pred ccCccccCceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999996 457999999999999999
Q ss_pred ecCcCCC-------CceEeeccCccccccCccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHh
Q 002239 587 NLKRALQ-------QPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS 659 (948)
Q Consensus 587 nL~~~l~-------qpqmlVvsDldd~FvPl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~ 659 (948)
+|+.++. +++|+|++|++|+|+|++++|||+++||++.|+++||+|+.+|.++++.++|+|+||++|+.+|+.
T Consensus 358 ~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~ 437 (926)
T 1m2v_B 358 KIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG 437 (926)
T ss_dssp ECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT
T ss_pred ecCCcccCCcccccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh
Confidence 9998765 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEeccCCCCCcccccccccccCCCCCCCcccccc-ccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccc
Q 002239 660 TGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHK-LLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASIS 738 (948)
Q Consensus 660 ~GGkIivF~sg~Pt~GpG~L~~red~~rsn~~~gt~ke~~-Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~ 738 (948)
.||||++|++|+||+|+|+|+.|++.+ +.+++||++ |++++++||++||++|+++||+||||+++.+|+||++|+
T Consensus 438 ~GGrI~~F~sg~Pt~GpG~l~~re~~~----~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~ 513 (926)
T 1m2v_B 438 VGGKIIVVSGTLPNLGIGKLQRRNESG----VVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLS 513 (926)
T ss_dssp TCEEEEEEESSCCCSSTTCCCCCCC--------CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHH
T ss_pred hCCEEEEEecCCCCCCCCccccccccc----ccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHH
Confidence 999999999999999999999998765 456788877 999999999999999999999999999999999999999
Q ss_pred cccccCcceEEEeCCCCCCc--hhhHHHHHHHHhccCCccccceeEEEeCCCceEeeeecccccCCCCceeecCCCCCce
Q 002239 739 VIPKTTGGQVYYYYPFSALS--DPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKA 816 (948)
Q Consensus 739 ~Ls~~TGG~v~~y~~F~~~~--d~~kL~~dL~r~ltr~~g~da~mrVR~S~GL~V~~~~Gnf~~rst~~~~lp~id~dtS 816 (948)
.|++.|||.+|+|++|+.++ |..+|.+||.+.|++++||+|+||||||+||+|+++||||+.+++++|+|+++|+|++
T Consensus 514 ~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~s~~~~l~~l~~d~s 593 (926)
T 1m2v_B 514 NLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQS 593 (926)
T ss_dssp HHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSSTTEEEEEEECSSCC
T ss_pred HHHhcCCceEEEcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCccccCcCceEeeccCCCCE
Confidence 99999999999999999875 7789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCCCCceeEEEEEEEEecCCcEEEEEEcCcccccCCHhHHHhhCCHHHHHHHHHHHHHHhcCCCChHHHH
Q 002239 817 IMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVR 896 (948)
Q Consensus 817 ia~el~~d~~L~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~lpVts~l~~vf~saD~eAi~~llaK~a~~~~~~~~l~daR 896 (948)
|+|+|++++++. ...+|||+|++||+.+|+|||||||++++|++++.+||+++|+||++++|+|+|+++++++++.|+|
T Consensus 594 ~av~f~~~~~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r 672 (926)
T 1m2v_B 594 YLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSLDDAR 672 (926)
T ss_dssp EEEEEEECSBCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHH
T ss_pred EEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 999999999986 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCC--ceecchhcchHHHHHHHHhcCccc
Q 002239 897 EQMMNLCVNALVSYRKFCATVSSSG--QLILPEALKLLPLYTLGKYYNVHS 945 (948)
Q Consensus 897 ~~L~~~lv~iL~~YRk~ca~~~s~g--qLiLPesLKlLPlyilaLlKs~~~ 945 (948)
+||+++|+++|++|||+|+..++.+ +|+|||+||+||+||++|+||.++
T Consensus 673 ~~L~~~li~il~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l 723 (926)
T 1m2v_B 673 VLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAF 723 (926)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999998765554 599999999999999999999875
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1.6e-127 Score=1171.64 Aligned_cols=546 Identities=29% Similarity=0.532 Sum_probs=493.9
Q ss_pred CCCceeecCCCCCCCCceeeeccccCCChhhhhhcCCccEEEEccCCCCCCCCCCceecccCCCCCccCCCCCceeccCc
Q 002239 391 ATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFM 470 (948)
Q Consensus 391 ~tt~~~~~D~gN~sP~fiR~T~n~iP~t~~ll~~~~LPLgivVqPfa~~~~~e~pVPvvd~g~~~pvRC~rCrAYINPf~ 470 (948)
+++.|+..|+|||+|+|||+|||+||.+++++++++|||||+|+||+++.++|+++|+++. .+|+||++|||||||||
T Consensus 49 ~~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~ 126 (810)
T 1pcx_A 49 PERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFV 126 (810)
T ss_dssp GGGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTC
T ss_pred CCCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCC--CCCCccCCccCEecCce
Confidence 3589999999999999999999999999999999999999999999998777778999875 35999999999999999
Q ss_pred eEecCCCeEEEccCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhh
Q 002239 471 KFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTG 550 (948)
Q Consensus 471 ~f~d~G~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av~sG 550 (948)
+|+++|++|+||||++.|++|.+|+ ++++|+|.|+++||||+++||||++++||+.|++.+++||||||||.+++++|
T Consensus 127 ~~~~~g~~W~C~~C~~~N~~P~~y~--~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g 204 (810)
T 1pcx_A 127 TFIEQGRRWRCNFCRLANDVPMQMD--QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSG 204 (810)
T ss_dssp EEETTTTEEECTTTCCEEECCGGGG--C-----CCCGGGSHHHHCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHT
T ss_pred EEeCCCCEEEccCCCCcCCCchhhc--cccccCccccccCccccCceEEEEcCchhccCCCCCcEEEEEEECChHHHhhh
Confidence 9999999999999999999999999 58889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEEecCcCCC-------CceEeeccCccccccCccccceeehHHhH
Q 002239 551 ATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQ-------QPLMLIVPDVEDVYTPLQSDIIVPVSECR 622 (948)
Q Consensus 551 ~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~VhfynL~~~l~-------qpqmlVvsDldd~FvPl~~~lLv~l~Esr 622 (948)
+|+++|++|+++|+.||+ +++++|||||||++||||+++.++. +++|+|++|++|+|+|++++||++++||+
T Consensus 205 ~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~ 284 (810)
T 1pcx_A 205 LLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACR 284 (810)
T ss_dssp HHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccccccCCCcccccccHHHHH
Confidence 999999999999999996 3579999999999999999998765 79999999999999999999999999999
Q ss_pred HHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhcCCEEEEEeccCCCCCcccccccccccCCCCCCCcccccc-cc
Q 002239 623 QHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHK-LL 701 (948)
Q Consensus 623 ~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~red~~rsn~~~gt~ke~~-Ll 701 (948)
+.|+++||+|+.+|.++++.++|+|+||++|+.+|+..||||++|++|+||+|+|+|+.|++.+ +.+++||+. |+
T Consensus 285 ~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~sg~pt~GpG~l~~r~~~~----~~~~~ke~~~l~ 360 (810)
T 1pcx_A 285 QNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESG----VVNTSKETAQLL 360 (810)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC---------------------
T ss_pred HHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCCccccccccc----ccCcccchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998765 456788877 99
Q ss_pred chhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEEEeCCCCCCc--hhhHHHHHHHHhccCCccccc
Q 002239 702 QPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALS--DPAKLYNDLRWNITRPQGFEA 779 (948)
Q Consensus 702 ~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~~F~~~~--d~~kL~~dL~r~ltr~~g~da 779 (948)
+++++||++||++|+++||+||||+++.+|+||++|+.|++.|||.+|+|++|+.++ |..+|.+||.+.|++++||+|
T Consensus 361 ~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a 440 (810)
T 1pcx_A 361 SCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMET 440 (810)
T ss_dssp ---CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred ccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHHHHhhhhcceeE
Confidence 999999999999999999999999999999999999999999999999999999875 778999999999999999999
Q ss_pred eeEEEeCCCceEeeeecccccCCCCceeecCCCCCceEEEEEEecCCCCCCCceeEEEEEEEEecCCcEEEEEEcCcccc
Q 002239 780 VMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859 (948)
Q Consensus 780 ~mrVR~S~GL~V~~~~Gnf~~rst~~~~lp~id~dtSia~el~~d~~L~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~lpV 859 (948)
+||||||+||+|+++||||+.+++++|+|+++|+|++|+|+|++++++. ...+|||+|++||+.+|+|||||||++++|
T Consensus 441 ~mrVR~S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~v 519 (810)
T 1pcx_A 441 VMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPT 519 (810)
T ss_dssp EEEEEECTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred EEEEEcCCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEecCccc
Confidence 9999999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred cCCHhHHHhhCCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCCC--ceecchhcchHHHHHH
Q 002239 860 TSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSG--QLILPEALKLLPLYTL 937 (948)
Q Consensus 860 ts~l~~vf~saD~eAi~~llaK~a~~~~~~~~l~daR~~L~~~lv~iL~~YRk~ca~~~s~g--qLiLPesLKlLPlyil 937 (948)
++++.++|+++|+||++++|+|+|+++++++++.|+|+||+++|+++|++|||+|+..++.+ +|+|||+||+||+||+
T Consensus 520 t~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~ 599 (810)
T 1pcx_A 520 TESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMH 599 (810)
T ss_dssp ESCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCC----CCSSCCEEEGGGTTHHHHHH
T ss_pred cCCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765544 5999999999999999
Q ss_pred HHhcCccc
Q 002239 938 GKYYNVHS 945 (948)
Q Consensus 938 aLlKs~~~ 945 (948)
+|+||.++
T Consensus 600 ~L~ks~~l 607 (810)
T 1pcx_A 600 SLTKHMAF 607 (810)
T ss_dssp HHHTSTTT
T ss_pred HHhcchhc
Confidence 99999875
No 6
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=1.7e-111 Score=1026.23 Aligned_cols=522 Identities=19% Similarity=0.274 Sum_probs=456.3
Q ss_pred CceeecCCCCCCCCceeeeccccCCChhhhhhcCCccEEEEccCCCCCCCCCCceecccCCCCCccCCC--CCceeccCc
Q 002239 393 SEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSR--CKAYINPFM 470 (948)
Q Consensus 393 t~~~~~D~gN~sP~fiR~T~n~iP~t~~ll~~~~LPLgivVqPfa~~~~~e~pVPvvd~g~~~pvRC~r--CrAYINPf~ 470 (948)
.+|...|++||+|+|||+|||+||.+++++++++||||++|+||++. +++|++++ +|+||++ |||||||||
T Consensus 6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~---~pvRC~~~~CrayiNPf~ 78 (769)
T 2nut_A 6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKER----PDLPPIQY---EPVLCSRTTCRAVLNPLC 78 (769)
T ss_dssp -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCC----SCCCCBCS---CCCBCSSTTCCCBCCTTS
T ss_pred cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCC----CCCCcCCC---CCCcCCCCCCCeEECCce
Confidence 46777889999999999999999999999999999999999999964 23888875 6999999 999999999
Q ss_pred eEecCCCeEEEccCCCCCCCCcccccCCCCCCCCCCCCCCCCc--cCccEEEEeccccccCCCCCcEEEEEEEcchhHHh
Q 002239 471 KFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL--CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQ 548 (948)
Q Consensus 471 ~f~d~G~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL--~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av~ 548 (948)
+|+++|++|+||||++.|++|.+|+ +++.. +.|||| +++||||+++++| +.+++||||||||.++++
T Consensus 79 ~~~~~~~~W~C~~C~~~N~~P~~Y~-~~~~~------~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~~ 147 (769)
T 2nut_A 79 QVDYRAKLWACNFCYQRNQFPPSYA-GISEL------NQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDED 147 (769)
T ss_dssp EEETTTTEEECSSSCCEEECCGGGT-TCBTT------BCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHHH
T ss_pred EEeCCCCEEEccCCCCCCCCChHHc-cCCcc------cCChhhcCCCCcEEEEccCCC----CCCCEEEEEEECCccHHH
Confidence 9999999999999999999999998 66543 468999 8999999999998 789999999999999987
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCC---------------CCce-EeeccC----c-----
Q 002239 549 TGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRAL---------------QQPL-MLIVPD----V----- 603 (948)
Q Consensus 549 sG~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l---------------~qpq-mlVvsD----l----- 603 (948)
++++|++|+++|+.||++ ++|||||||++||||+++.++ ++++ |++++| +
T Consensus 148 ---l~~l~~si~~~L~~Lp~~--~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~ 222 (769)
T 2nut_A 148 ---LQALKESMQMSLSLLPPT--ALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGP 222 (769)
T ss_dssp ---HHHHHHHHHHHHTTSCTT--CEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------
T ss_pred ---HHHHHHHHHHHHHhCCCC--ceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccc
Confidence 889999999999999976 899999999999999999865 3444 455764 3
Q ss_pred cccc-cCccccceeehHHhHHHHHHHHhhccc---cccCCCCCcccHHHHHHHHHHHHH----hcCCEEEEEeccCCCCC
Q 002239 604 EDVY-TPLQSDIIVPVSECRQHLELLLESIPS---MFQNNRTAESAFGAAVKAAFLALK----STGGKLLVFQSVLPSVG 675 (948)
Q Consensus 604 dd~F-vPl~~~lLv~l~Esr~~I~~lLd~Lp~---~f~~~~~~~~alG~AL~aA~~lL~----~~GGkIivF~sg~Pt~G 675 (948)
+|+| +|+ ++||++++||++.|+++||+|+. ++.++++.++|+|+||++|+.+|+ ..||||++|++|+||+|
T Consensus 223 ~~~f~~p~-~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~G 301 (769)
T 2nut_A 223 QVQQPPPS-NRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQG 301 (769)
T ss_dssp ------CC-CSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSS
T ss_pred cccCCCcc-cceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCC
Confidence 7887 666 89999999999999999999988 457788999999999999999999 68999999999999999
Q ss_pred cccccccccc--cCCCCCCCcccc-ccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEEEeC
Q 002239 676 IGALSAREAE--GRSNISSGEKET-HKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYY 752 (948)
Q Consensus 676 pG~L~~red~--~rsn~~~gt~ke-~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~ 752 (948)
||+|+.|++. .|+| .+++|| ++|++++++||++||++|+++||+||||+++.+|+|+++|+.|++.|||.+|+|+
T Consensus 302 pG~l~~r~~~~~~rs~--~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~ 379 (769)
T 2nut_A 302 PGMVVGDELKTPIRSW--HDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGD 379 (769)
T ss_dssp SSCCSCSBTTSCCCCH--HHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEES
T ss_pred CCCCcCcccccccccc--cccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcC
Confidence 9999999753 3443 224555 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHhccC--CccccceeEEEeCCCceEeeeecccc---------------cCCCCceeecCCCCCc
Q 002239 753 PFSALSDPAKLYNDLRWNITR--PQGFEAVMRVRCSQGIQVQEYHGNFC---------------KRIPTDIDLPAIDCNK 815 (948)
Q Consensus 753 ~F~~~~d~~kL~~dL~r~ltr--~~g~da~mrVR~S~GL~V~~~~Gnf~---------------~rst~~~~lp~id~dt 815 (948)
+|+.+++.++|.++|.+.+++ ++||||+||||||+||+|+++||||+ .+++++|+|+++|+|+
T Consensus 380 ~F~~~~~~~~l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~ 459 (769)
T 2nut_A 380 SFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTT 459 (769)
T ss_dssp CSSSHHHHHHHHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTC
T ss_pred CCchhhHHHHHHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCC
Confidence 998765555555444444433 79999999999999999999999986 5788999999999999
Q ss_pred eEEEEEEecCC----CCCCCceeEEEEEEEEecCCcEEEEEEcCcccccCCH---hHHHhhCCHHHHHHHHHHHHHHhcC
Q 002239 816 AIMVTLKHDDK----LQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNL---SNLYRSADLDTQFTCFMKQAASEIP 888 (948)
Q Consensus 816 Sia~el~~d~~----L~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~lpVts~l---~~vf~saD~eAi~~llaK~a~~~~~ 888 (948)
+|+|+|+++++ +.++..+|||+|++||+.+|+|||||||++++|++++ .++|+++|+||++++|+|+|+++++
T Consensus 460 s~~v~f~~~~~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~ 539 (769)
T 2nut_A 460 TLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAE 539 (769)
T ss_dssp CEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEecCccccccCCCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 99999999987 4456789999999999999999999999999999987 5999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHH---HHHHHHhccCCCCCCceecchhcchHHHHHHHHhcCccc
Q 002239 889 STPLANVREQMMNLCVNA---LVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHS 945 (948)
Q Consensus 889 ~~~l~daR~~L~~~lv~i---L~~YRk~ca~~~s~gqLiLPesLKlLPlyilaLlKs~~~ 945 (948)
++++.|+|+||+++|+++ |..|||+| +++|+|||+||+||+||++|+||.++
T Consensus 540 ~~~~~d~~~~ld~~li~l~~~~~~Yrk~~-----~~sl~lp~~lkllP~~~~~L~ks~~l 594 (769)
T 2nut_A 540 TEEGPDVLRWLDRQLIRLCQKFGEYHKDD-----PSSFRFSETFSLYPQFMFHLRRSSFL 594 (769)
T ss_dssp TC---CHHHHHHHHHHHHHHHHCBCCTTC-----GGGCBCCTTTTTHHHHHHHHHHSTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhCcC-----cccccccHHHHHHHHHHHHHhccccc
Confidence 999999999999999887 55788877 35799999999999999999999865
No 7
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=1.4e-110 Score=1018.69 Aligned_cols=510 Identities=19% Similarity=0.283 Sum_probs=455.2
Q ss_pred CCCCCceeeeccccCCChhhhhhcCCccEEEEccCCCCCCCCCCceecccCCCCCccCCC--CCceeccCceEecCCCeE
Q 002239 402 NCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSR--CKAYINPFMKFIDQGRRF 479 (948)
Q Consensus 402 N~sP~fiR~T~n~iP~t~~ll~~~~LPLgivVqPfa~~~~~e~pVPvvd~g~~~pvRC~r--CrAYINPf~~f~d~G~~W 479 (948)
||+++|||+|||+||.+++++++++||||++|+||++. +++|++++ +|+||++ |||||||||+|+++|++|
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~~---~pvRC~~~~CrayiNPf~~~~~~~~~W 78 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAPY---NPVVCSGPHCKSILNPYCVIDPRNSSW 78 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEECS---CCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC----CCCCcCCC---CCCccCCCCCCeEECCceEEeCCCCEE
Confidence 89999999999999999999999999999999999964 24888875 6999999 999999999999999999
Q ss_pred EEccCCCCCCCCcccccCCCCCCCCCCCCCCCCccCccEEEEeccccccCCCCCcEEEEEEEcchhHHhhhHHHHHHHHH
Q 002239 480 ICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAI 559 (948)
Q Consensus 480 ~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~~R~p~pp~yvFvIDVS~~av~sG~l~~v~~sI 559 (948)
+||||++.|++|.+|+ +++.+ +.||||+++||||++++ +++.+|+||||||||.++++ |+++|++|
T Consensus 79 ~C~~C~~~N~~P~~y~-~~~~~------~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl 144 (768)
T 1m2o_A 79 SCPICNSRNHLPPQYT-NLSQE------NMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESI 144 (768)
T ss_dssp CCTTTCCCCBCCGGGC-C---C------CCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHH
T ss_pred EcccCCCCCCCChHHc-cCCcc------cCChhhccCCEEEECCC----CCCCCCEEEEEEECCcCHHH---HHHHHHHH
Confidence 9999999999999998 66543 56899999999999997 47899999999999999987 89999999
Q ss_pred HHHHhcCCCCCCceEEEEEeCCeEEEEecCcCC---------------CCceEee--ccC-----c-----cccccCc--
Q 002239 560 SQVISDLPEGPRTMVGIATFDSTIHFYNLKRAL---------------QQPLMLI--VPD-----V-----EDVYTPL-- 610 (948)
Q Consensus 560 ~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l---------------~qpqmlV--vsD-----l-----dd~FvPl-- 610 (948)
+++|+.||++ ++|||||||++||||+++..+ ++.++++ +.| + +|.|+|+
T Consensus 145 ~~~L~~Lp~~--~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~ 222 (768)
T 1m2o_A 145 ITSLSLLPPN--ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPF 222 (768)
T ss_dssp HHHHHTSCTT--CEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSS
T ss_pred HHHHHhCCCC--CEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccccccccccccccC
Confidence 9999999976 899999999999999999764 2333333 333 2 6767776
Q ss_pred -cccceeehHHhHHHHHHHHhhccc---cccCCCCCcccHHHHHHHHHHHHH----hcCCEEEEEeccCCCCCccccccc
Q 002239 611 -QSDIIVPVSECRQHLELLLESIPS---MFQNNRTAESAFGAAVKAAFLALK----STGGKLLVFQSVLPSVGIGALSAR 682 (948)
Q Consensus 611 -~~~lLv~l~Esr~~I~~lLd~Lp~---~f~~~~~~~~alG~AL~aA~~lL~----~~GGkIivF~sg~Pt~GpG~L~~r 682 (948)
.++||++++||++.|+++||+|+. ++.++++.++|+|+||++|+.+|+ ..||||++|++|+||+|||+|+.|
T Consensus 223 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r 302 (768)
T 1m2o_A 223 SLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNS 302 (768)
T ss_dssp SGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCS
T ss_pred CccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccc
Confidence 589999999999999999999998 788889999999999999999999 589999999999999999999999
Q ss_pred cccc--CCCCCCCccc-cccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEEEeCCCCCCch
Q 002239 683 EAEG--RSNISSGEKE-THKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSD 759 (948)
Q Consensus 683 ed~~--rsn~~~gt~k-e~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~~F~~~~d 759 (948)
++.. |+|+ +++| +++|++++++||++||++|+++||+||||+++.+|+||++|+.|++.|||.+|+|++|+.
T Consensus 303 ~~~~~~rs~~--d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~--- 377 (768)
T 1m2o_A 303 ELKDPLRSHH--DIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFST--- 377 (768)
T ss_dssp BTTSCCCCHH--HHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTS---
T ss_pred cccccccccc--ccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCch---
Confidence 7543 4431 2344 478999999999999999999999999999999999999999999999999999999976
Q ss_pred hhHHHHHHHHhccC------CccccceeEEEeCCCceEeeeecccc----------------cCCCCceeecCCCCCceE
Q 002239 760 PAKLYNDLRWNITR------PQGFEAVMRVRCSQGIQVQEYHGNFC----------------KRIPTDIDLPAIDCNKAI 817 (948)
Q Consensus 760 ~~kL~~dL~r~ltr------~~g~da~mrVR~S~GL~V~~~~Gnf~----------------~rst~~~~lp~id~dtSi 817 (948)
++|.++|+|.+++ ++||+|+||||||+||+|+++||||+ .+++++|+|+++|+|++|
T Consensus 378 -~~~~~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~ 456 (768)
T 1m2o_A 378 -AIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSY 456 (768)
T ss_dssp -HHHHHHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCE
T ss_pred -HHHHHHHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEE
Confidence 4688888898887 79999999999999999999999998 366889999999999999
Q ss_pred EEEEEecCCCC-------------CCCceeEEEEEEEEecCCcEEEEEEcCcccccCC-HhHHHhhCCHHHHHHHHHHHH
Q 002239 818 MVTLKHDDKLQ-------------DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSN-LSNLYRSADLDTQFTCFMKQA 883 (948)
Q Consensus 818 a~el~~d~~L~-------------~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~lpVts~-l~~vf~saD~eAi~~llaK~a 883 (948)
+|+|++++++. +...+|||+|++||+.+|+|||||||++++|+++ +.++|+++|+||++++|+|+|
T Consensus 457 ~v~f~~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~a 536 (768)
T 1m2o_A 457 AIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIA 536 (768)
T ss_dssp EEEEEECCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHH
T ss_pred EEEEEeccccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999863 4678999999999999999999999999999986 999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHH---HHHHHHhccCCCCCCceecchhcchHHHHHHHHhcCccc
Q 002239 884 ASEIPSTPLANVREQMMNLCVNA---LVSYRKFCATVSSSGQLILPEALKLLPLYTLGKYYNVHS 945 (948)
Q Consensus 884 ~~~~~~~~l~daR~~L~~~lv~i---L~~YRk~ca~~~s~gqLiLPesLKlLPlyilaLlKs~~~ 945 (948)
+++++++++.|+|+||+++|+++ |..|||+|. ++|+|||+||+||+||++|+||.++
T Consensus 537 v~~~~~~~~~d~r~~l~~~li~l~~~~~~Yrk~~~-----~~l~lp~~lk~lP~~~~~L~ks~~l 596 (768)
T 1m2o_A 537 VHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDP-----QSFRLAPNFSLYPQFTYYLRRSQFL 596 (768)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHSBCCTTCG-----GGCBCCTTTTHHHHHHHHHHHSTTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCc-----cccccCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999 457888773 4899999999999999999999865
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.49 E-value=8.4e-15 Score=122.91 Aligned_cols=44 Identities=30% Similarity=0.663 Sum_probs=41.5
Q ss_pred CCCCccCCC--CCceeccCceEecCCCeEEEccCCCCCCCCccccc
Q 002239 453 DMGPVRCSR--CKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHC 496 (948)
Q Consensus 453 ~~~pvRC~r--CrAYINPf~~f~d~G~~W~CnfC~~~N~vP~~Y~~ 496 (948)
+++|+||++ |||||||||+|++++++|+||||+..|++|.+|+.
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~ 51 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAG 51 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhc
Confidence 467999999 99999999999999999999999999999999983
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.39 E-value=3.9e-10 Score=130.56 Aligned_cols=339 Identities=11% Similarity=0.052 Sum_probs=208.9
Q ss_pred CcEEEEEEEcchhHHh-hhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEe-cCcCCCCceEeeccCccccccCc
Q 002239 533 PAVFFFLIDVSMNALQ-TGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYN-LKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 533 pp~yvFvIDVS~~av~-sG~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~Vhfyn-L~~~l~qpqmlVvsDldd~FvPl 610 (948)
+..++||||+|.++.. ...++.++++++..|+.|.++ .+|+||+|++..+.+- +.
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~--drv~lV~Fs~~a~~~~p~t--------------------- 133 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDG--AFFAVVAGTEGARVVYPTG--------------------- 133 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTT--CEEEEEEESSSEEEEESSS---------------------
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCC--CEEEEEEEcCceEEEecCC---------------------
Confidence 4579999999999852 235889999999999999865 6999999998876532 11
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhcC---CEEEEEeccCCCCCcccccccccccC
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG---GKLLVFQSVLPSVGIGALSAREAEGR 687 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~G---GkIivF~sg~Pt~GpG~L~~red~~r 687 (948)
.++...-.+.++.+.+.|+.|.. ...+.++.||+.|.++|+... ..||++++|.++.+.
T Consensus 134 -~~l~~~~~~~~~~l~~~I~~L~~------~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~----------- 195 (464)
T 4fx5_A 134 -GQLLRADYQSRAAAKEAVGRLHA------NGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESET----------- 195 (464)
T ss_dssp -SSCEECSHHHHHHHHHHHHTCCC------CSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSC-----------
T ss_pred -cccccCCHHHHHHHHHHHHcCCC------CCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCC-----------
Confidence 11111112456677777887763 345789999999999997643 368888888765310
Q ss_pred CCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEEEeCCCCCCchhhHHHHHH
Q 002239 688 SNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDL 767 (948)
Q Consensus 688 sn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~~F~~~~d~~kL~~dL 767 (948)
. ....+ +.+..+.+|.|+.|.++.+ .|...|..|++.|||..++..++. +......++
T Consensus 196 -------~---------~~l~~--~~~a~~~~i~i~tiGiG~~-~d~~~L~~IA~~tgG~~~~v~d~~---~L~~~f~~i 253 (464)
T 4fx5_A 196 -------P---------ADLAR--AIQSSIGNFTADCRGIGED-WEPKELRKIADALLGTVGIIRDPA---TLAEDFREM 253 (464)
T ss_dssp -------H---------HHHHH--HHHHHTTTCEEEEEEESSS-SCHHHHHHHHHHTTCCEEEESSGG---GHHHHHHHH
T ss_pred -------h---------HHHHH--HHHHhcCCCeEEEEEeCCc-cCHHHHHHHHHhCCCEEEEcCCHH---HHHHHHHHH
Confidence 0 01111 2234467899999888654 677889999999999998887643 223333334
Q ss_pred HHhccCCccccceeEEEeCCCceEeeeecc------cc-cC------CCCceeecCCCCCce--EEEEEEecCCCCCCCc
Q 002239 768 RWNITRPQGFEAVMRVRCSQGIQVQEYHGN------FC-KR------IPTDIDLPAIDCNKA--IMVTLKHDDKLQDGSE 832 (948)
Q Consensus 768 ~r~ltr~~g~da~mrVR~S~GL~V~~~~Gn------f~-~r------st~~~~lp~id~dtS--ia~el~~d~~L~~~~~ 832 (948)
...+.....-++.++|++..|+.+..+..- +. .+ ....+.++.+ .+.. |.++|++...- .+..
T Consensus 254 ~~~~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~~-~g~~ 331 (464)
T 4fx5_A 254 TAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPGN-IGQE 331 (464)
T ss_dssp HHHHHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCCC-TTCE
T ss_pred HHHhhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCCC-CCce
Confidence 444556778899999999999988765321 11 11 1235778888 6655 55555555432 2444
Q ss_pred ee-EEEEEEEEecCCcEEEEEEcCcccccCCH-------hHHHhhCCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002239 833 CA-FQCALLYTTVYGQRRIRVTTLSLPCTSNL-------SNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCV 904 (948)
Q Consensus 833 ~y-IQ~AlLYT~~~GeRRIRV~Tl~lpVts~l-------~~vf~saD~eAi~~llaK~a~~~~~~~~l~daR~~L~~~lv 904 (948)
.. .++.+.|.+..|++.+.=..+.+.++.+. .+|.+...+.. +.-..+++...+..+++..+.+.|.....
T Consensus 332 ~~~~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~-~a~~~~~a~~~~~~gd~~~A~~~L~~A~~ 410 (464)
T 4fx5_A 332 KLAGRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAE-MAAAIQEGLDAQAAGDLDTATARLGRAMD 410 (464)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEcCCCccccccccceEEEEEccccccCCCCHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 79999999988874322223444444442 23333332222 22223455556666777777766654432
Q ss_pred HH--------HHHHHHhccCCCCCCceecchhcchHHHHHH
Q 002239 905 NA--------LVSYRKFCATVSSSGQLILPEALKLLPLYTL 937 (948)
Q Consensus 905 ~i--------L~~YRk~ca~~~s~gqLiLPesLKlLPlyil 937 (948)
.. +..-+|..--+...|...|=+..+.+=.-+|
T Consensus 411 ~~~~~g~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~ 451 (464)
T 4fx5_A 411 LAVESGHEDTVKMLRKVTEVDPATSKVRAKAKVDKGDAMEL 451 (464)
T ss_dssp HHHHHTCHHHHHHHHTTEEECTTTCCEEECSSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhhEEecCCCCeEEeccCCcccchhhh
Confidence 22 2233443211334566777666655444433
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=2.2e-08 Score=102.49 Aligned_cols=174 Identities=18% Similarity=0.158 Sum_probs=125.8
Q ss_pred CCCcEEEEEEEcchhHHhh----hHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCcccc
Q 002239 531 PMPAVFFFLIDVSMNALQT----GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDV 606 (948)
Q Consensus 531 p~pp~yvFvIDVS~~av~s----G~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~ 606 (948)
..+..++||||+|.++... ..++.+++.++..++.+++ .+||||+|++..+..-
T Consensus 9 ~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~~---~~v~lv~F~~~~~~~~------------------- 66 (218)
T 3ibs_A 9 RKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELDN---DKVGMIVFAGDAFTQL------------------- 66 (218)
T ss_dssp -CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCSS---CEEEEEEESSSEEEEE-------------------
T ss_pred cCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCCC---CeEEEEEECCCceEeC-------------------
Confidence 3466799999999998643 2588999999999999974 6999999997755321
Q ss_pred ccCccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc---CCEEEEEeccCCCCCcccccccc
Q 002239 607 YTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---GGKLLVFQSVLPSVGIGALSARE 683 (948)
Q Consensus 607 FvPl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~---GGkIivF~sg~Pt~GpG~L~~re 683 (948)
++...++.+..+|+.|..... ....+.++.||+.|..+++.. ...|+++++|.++.+
T Consensus 67 ----------~~~~~~~~~~~~l~~l~~~~~--~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------- 126 (218)
T 3ibs_A 67 ----------PITSDYISAKMFLESISPSLI--SKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------- 126 (218)
T ss_dssp ----------EEESCHHHHHHHHHTCCGGGC--CSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS--------
T ss_pred ----------CCCCCHHHHHHHHHhcCcccC--CCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC--------
Confidence 111224556778888864321 235578999999999988753 256888888876543
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCc------------------------ccccccccc
Q 002239 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT------------------------YVDIASISV 739 (948)
Q Consensus 684 d~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~------------------------~vDlatL~~ 739 (948)
-+.+++..+.+.+|.|..+.++.. ..|...|..
T Consensus 127 -----------------------~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~ 183 (218)
T 3ibs_A 127 -----------------------GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQE 183 (218)
T ss_dssp -----------------------CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHH
T ss_pred -----------------------cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHH
Confidence 024566778889999999988764 567788999
Q ss_pred ccccCcceEEEeCCCCCCchhhHHHHHHHHhc
Q 002239 740 IPKTTGGQVYYYYPFSALSDPAKLYNDLRWNI 771 (948)
Q Consensus 740 Ls~~TGG~v~~y~~F~~~~d~~kL~~dL~r~l 771 (948)
|++.|||..++..+- ..+.+.+.++|.+..
T Consensus 184 iA~~~gG~~~~~~~~--~~~~~~~~~~i~~l~ 213 (218)
T 3ibs_A 184 IAKDGKGIYVRVDNS--NSAQKAISQEISKMA 213 (218)
T ss_dssp HHHHTEEEEEEECSS--SHHHHHHHHHHHHHH
T ss_pred HHHhcCCEEEECCCC--hHHHHHHHHHHHHhh
Confidence 999999998887652 234566777776543
No 11
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.62 E-value=1.1e-06 Score=87.24 Aligned_cols=155 Identities=11% Similarity=0.091 Sum_probs=105.3
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCccc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl~~ 612 (948)
+.-++||||+|.++-.. .+.+++.+++.++.+-. ++.+||||+|++.+++.-
T Consensus 7 ~~div~vlD~SgSM~~~--~~~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~------------------------- 58 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHH--WNEIYYFVEQLAHKFIS-PQLRMSFIVFSTRGTTLM------------------------- 58 (185)
T ss_dssp EEEEEEEEECSGGGGGG--HHHHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE-------------------------
T ss_pred CeeEEEEEeCCCChhhh--HHHHHHHHHHHHHHhCC-CCcEEEEEEEecCceEEe-------------------------
Confidence 34589999999988543 56677777888877733 468999999998765421
Q ss_pred cceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHH--hcCC-----EEEEEeccCCCCCcccccccccc
Q 002239 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALK--STGG-----KLLVFQSVLPSVGIGALSAREAE 685 (948)
Q Consensus 613 ~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~--~~GG-----kIivF~sg~Pt~GpG~L~~red~ 685 (948)
++.+.++.+...|+.|..+. ....+.++.||+.|.+.|. ..++ .|+++++|.++.+.
T Consensus 59 ----~l~~~~~~~~~~i~~l~~~~---~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~--------- 122 (185)
T 3n2n_F 59 ----KLTEDREQIRQGLEELQKVL---PGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDL--------- 122 (185)
T ss_dssp ----EEECCHHHHHHHHHHHHTCC---CCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHH---------
T ss_pred ----ccCCCHHHHHHHHHHHhhhc---CCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCc---------
Confidence 11123555667777776532 2456789999999999773 2232 57777777643210
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEEEeCC
Q 002239 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753 (948)
Q Consensus 686 ~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~~ 753 (948)
..-.++.+.++.+.||.|..+.++ ..|...|..|+.. +|.+|+..+
T Consensus 123 -------------------~~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 123 -------------------FFYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp -------------------HHHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEHHH
T ss_pred -------------------ccchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEecc
Confidence 001245777888899888777776 5688889999865 577777754
No 12
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.61 E-value=1.8e-06 Score=85.48 Aligned_cols=152 Identities=12% Similarity=0.073 Sum_probs=100.9
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCccc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl~~ 612 (948)
+.-++||||+|.++.... . ..++.+++.+..+-. ++.+||||+|++..+..-
T Consensus 6 ~~dvv~vlD~SgSM~~~~-~-~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~------------------------- 57 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNW-I-EIYNFVQQLAERFVS-PEMRLSFIVFSSQATIIL------------------------- 57 (182)
T ss_dssp CEEEEEEEECSGGGGGGH-H-HHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE-------------------------
T ss_pred ceeEEEEEECCCCcccCH-H-HHHHHHHHHHHHhcC-CCceEEEEEeCCCceEEE-------------------------
Confidence 457899999999885432 2 345566666666533 458999999998765321
Q ss_pred cceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc-----CCEEEEEeccCCCCCcccccccccccC
Q 002239 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSAREAEGR 687 (948)
Q Consensus 613 ~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~red~~r 687 (948)
++...++.+..+|+.|..+. ....+.++.||+.|...|+.. ...|+++++|.++.+
T Consensus 58 ----~~~~~~~~~~~~l~~l~~~~---~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~------------ 118 (182)
T 1shu_X 58 ----PLTGDRGKISKGLEDLKRVS---PVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL------------ 118 (182)
T ss_dssp ----EEECCHHHHHHHHHHHHTCC---CCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT------------
T ss_pred ----CCCCCHHHHHHHHHhcccCC---CCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC------------
Confidence 00112445566677665322 234678999999999999643 356777888765310
Q ss_pred CCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEE
Q 002239 688 SNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVY 749 (948)
Q Consensus 688 sn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~ 749 (948)
......+.+..+.+.+|.|..+.++ ..|...|..|+..+||..+
T Consensus 119 ----------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~~~ 162 (182)
T 1shu_X 119 ----------------VPSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFP 162 (182)
T ss_dssp ----------------HHHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGEEE
T ss_pred ----------------CchhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCceEE
Confidence 0122355677788899888888776 4677889999999877533
No 13
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.54 E-value=1.1e-06 Score=88.33 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=108.5
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccCc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvPl 610 (948)
+.-.+||||+|.++-.+ .++.+++.|++.++.+.. ..+.+||||+|++.++.. .+..
T Consensus 5 ~~div~vlD~SgSm~~~-~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-------------------- 63 (189)
T 1atz_A 5 PLDVILLLDGSSSFPAS-YFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNV-------------------- 63 (189)
T ss_dssp CEEEEEEEECSSSSCHH-HHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTC--------------------
T ss_pred ceeEEEEEeCCCCCChh-hHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCC--------------------
Confidence 45689999999987533 478899999999998863 345899999999876532 1110
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc--C-----CE-EEEEeccCCCCCccccccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST--G-----GK-LLVFQSVLPSVGIGALSAR 682 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~--G-----Gk-IivF~sg~Pt~GpG~L~~r 682 (948)
...++.+.+.|+.|.. ....+.+|.||+.|.+.+... | -| |+++++|..+.
T Consensus 64 --------~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~-------- 122 (189)
T 1atz_A 64 --------VPEKAHLLSLVDVMQR-----EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD-------- 122 (189)
T ss_dssp --------CCCHHHHHHHHHTCCC-----CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS--------
T ss_pred --------CCCHHHHHHHHHhCcC-----CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc--------
Confidence 0124556677777764 235678999999999988642 1 25 67777764321
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcc-eEEEeCCCC
Q 002239 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG-QVYYYYPFS 755 (948)
Q Consensus 683 ed~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG-~v~~y~~F~ 755 (948)
+ ..+.+.++.+.||.|..+.++.+ .|...|..|+..++| .++...+|.
T Consensus 123 -~-----------------------~~~~~~~~~~~gi~v~~igvG~~-~~~~~L~~iA~~~~~~~~~~~~~~~ 171 (189)
T 1atz_A 123 -S-----------------------VDAAADAARSNRVTVFPIGIGDR-YDAAQLRILAGPAGDSNVVKLQRIE 171 (189)
T ss_dssp -C-----------------------CHHHHHHHHHTTEEEEEEEESSS-SCHHHHHHHTGGGGGGGCEEESSTT
T ss_pred -h-----------------------HHHHHHHHHHCCCEEEEEEcCCc-CCHHHHHHHHCCCcccCEEEecChh
Confidence 0 13456677789998888877653 577888999988875 567666663
No 14
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.54 E-value=1.5e-06 Score=88.92 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=109.1
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCc
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl 610 (948)
.+.-++||||+|.++-... ++.+++.++..++.|.. +...+||||+|++.++..- ++.+
T Consensus 14 ~~~div~vlD~SgSM~~~~-~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~----- 73 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASN-FTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE----- 73 (223)
T ss_dssp -CEEEEEEEECSTTTCHHH-HHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE--------------CTTS-----
T ss_pred CceeEEEEEeCCCCCchHH-HHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee--------------cccc-----
Confidence 4677999999999875433 67788888888776643 2347999999998775421 0100
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhcC-----------CEEEEEeccCCCCCcccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTG-----------GKLLVFQSVLPSVGIGAL 679 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~G-----------GkIivF~sg~Pt~GpG~L 679 (948)
.....++.+.+.|+.|..... .....+.++.||+.|...|...+ -.||++++|.++.|.-
T Consensus 74 ------~~~~~~~~~~~~i~~l~~~~~-~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~-- 144 (223)
T 1q0p_A 74 ------ADSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD-- 144 (223)
T ss_dssp ------GGGGCHHHHHHHHHTCCTTSC-SCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC--
T ss_pred ------CCCCCHHHHHHHHHhcccccc-cCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC--
Confidence 112234566777888864211 12456789999999999997421 2488899998876420
Q ss_pred cccccccCCCCCCCccccccccchhHHHHHHH------HHHHHhcCeEEEEEEccCccccccccccccccCcc--eEEEe
Q 002239 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAM------AIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG--QVYYY 751 (948)
Q Consensus 680 ~~red~~rsn~~~gt~ke~~Ll~pa~~FYk~L------A~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG--~v~~y 751 (948)
.. ...+..+++ +..+.+.+|.|..+.++. .+|...|..|+..||| .+|+.
T Consensus 145 -----~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~ 202 (223)
T 1q0p_A 145 -----PI----------------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKV 202 (223)
T ss_dssp -----TH----------------HHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEET
T ss_pred -----hH----------------HHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEc
Confidence 00 000011111 122345677777777654 4678899999999999 67766
Q ss_pred CCC
Q 002239 752 YPF 754 (948)
Q Consensus 752 ~~F 754 (948)
.++
T Consensus 203 ~~~ 205 (223)
T 1q0p_A 203 KDM 205 (223)
T ss_dssp TC-
T ss_pred CCH
Confidence 654
No 15
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=3e-07 Score=99.22 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=104.2
Q ss_pred EEEEEEEcchhHHhh----hHHHHHHHHHHHHHhcCC-CCCCceEEEEEeCC-eEEEEecCcCCCCceEeeccCcccccc
Q 002239 535 VFFFLIDVSMNALQT----GATAAACSAISQVISDLP-EGPRTMVGIATFDS-TIHFYNLKRALQQPLMLIVPDVEDVYT 608 (948)
Q Consensus 535 ~yvFvIDVS~~av~s----G~l~~v~~sI~~~L~~LP-~~~rtrVGiITFds-~VhfynL~~~l~qpqmlVvsDldd~Fv 608 (948)
..|||||+|.++... ..+++++++++..++.+. .++..+||||+|.. ..+++
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 469999999988532 257888888887776542 12336999999964 22221
Q ss_pred CccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc---C--CEEEEEeccCCCCCcccccccc
Q 002239 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST---G--GKLLVFQSVLPSVGIGALSARE 683 (948)
Q Consensus 609 Pl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~---G--GkIivF~sg~Pt~GpG~L~~re 683 (948)
+++...+..|...|+.|.. ...+.++.||+.|..+|++. + -|||+|+++.-+.
T Consensus 63 -------~plT~D~~~il~aL~~l~~------~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~--------- 120 (268)
T 4b4t_W 63 -------STFTAEFGKILAGLHDTQI------EGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD--------- 120 (268)
T ss_dssp -------EEEESCHHHHHHHHTTCCC------CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS---------
T ss_pred -------cCCcchHHHHHHHhhhcCc------CCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC---------
Confidence 1222235567777887753 45678999999999999863 2 3799999875210
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcc
Q 002239 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG 746 (948)
Q Consensus 684 d~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG 746 (948)
..+-..++++++.+++|.||++.|+.+..+-..|..|++..+|
T Consensus 121 --------------------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 121 --------------------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp --------------------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred --------------------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 1233578999999999999999999766666777777766655
No 16
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.51 E-value=1.2e-06 Score=93.75 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=108.7
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCcc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQ 611 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl~ 611 (948)
+.-++||||+|.++-...+.+.+++.++..++.|.- ....+||||+|++.++..- ++.+
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~--------------~l~~------ 77 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELI--------------RLGS------ 77 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEE--------------CTTS------
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEE--------------ecCC------
Confidence 466899999999886555546789999999999862 1348999999998765321 0100
Q ss_pred ccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhcCC------EEEEEeccCCCCCcccccccccc
Q 002239 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGG------KLLVFQSVLPSVGIGALSAREAE 685 (948)
Q Consensus 612 ~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~GG------kIivF~sg~Pt~GpG~L~~red~ 685 (948)
+ .+..++.+.+.|+.|...+ .....+.+|.||+.|..+++..|+ .||++++|.++.
T Consensus 78 --~---~~~~~~~~~~~i~~l~~~~--~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d----------- 139 (266)
T 4hqo_A 78 --G---QSIDKRQALSKVTELRKTY--TPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS----------- 139 (266)
T ss_dssp --H---HHHCHHHHHHHHHHHHHHC--CCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC-----------
T ss_pred --C---CccCHHHHHHHHHHhhhcc--CCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC-----------
Confidence 0 0112455566666664211 123467899999999999987533 477777776541
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccC--cc--eEEEeCCC
Q 002239 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTT--GG--QVYYYYPF 754 (948)
Q Consensus 686 ~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~T--GG--~v~~y~~F 754 (948)
..-..+.+.++.+.||.|..+.++. .+|-..|..|+... +| .+|++.+|
T Consensus 140 -------------------~~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~g~~~~~~~~d~ 192 (266)
T 4hqo_A 140 -------------------KYRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPREPNCKFYSYADW 192 (266)
T ss_dssp -------------------HHHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTCSSCTTEECSCH
T ss_pred -------------------chHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCCCCCCeEEecCH
Confidence 0113456778888998888777765 45666677888664 33 77777665
No 17
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.51 E-value=1.1e-06 Score=94.53 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=112.5
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccC
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTP 609 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~-~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvP 609 (948)
.+.-++||||+|.++-...+++.+++.++..++.|... ...+||||+|++.++.. .+....
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~----------------- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA----------------- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC-----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC-----------------
Confidence 35678999999998866666688999999999998742 34899999999877432 222110
Q ss_pred ccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhcCC------EEEEEeccCCCCCcccccccc
Q 002239 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGG------KLLVFQSVLPSVGIGALSARE 683 (948)
Q Consensus 610 l~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~GG------kIivF~sg~Pt~GpG~L~~re 683 (948)
...++.|.+.|+.|.... .....+.+|.||+.|...|...++ .||++++|.++.+
T Consensus 83 ---------~~~~~~l~~~i~~l~~~~--~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~-------- 143 (281)
T 4hqf_A 83 ---------SKNKEKALIIIKSLLSTN--LPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSI-------- 143 (281)
T ss_dssp ---------SSCHHHHHHHHHHHHHTT--GGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCH--------
T ss_pred ---------ccCHHHHHHHHHHHhhcc--CCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCc--------
Confidence 001334455566665311 123467899999999888876543 3777787765410
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCcccccccccccccc--Ccc--eEEEeCCCCC
Q 002239 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT--TGG--QVYYYYPFSA 756 (948)
Q Consensus 684 d~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~--TGG--~v~~y~~F~~ 756 (948)
.-..+.+.++.+.||.|..+.++.+ +|...|..|+.. +|| .+|+..+|+.
T Consensus 144 ----------------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 144 ----------------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp ----------------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred ----------------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 1124566777889988877777654 666778888766 676 7888888754
No 18
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.49 E-value=2.7e-06 Score=86.82 Aligned_cols=173 Identities=11% Similarity=0.125 Sum_probs=112.6
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccCc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~-~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvPl 610 (948)
+.-.+||||+|.+.-.. -++.+++.+++.++.|.-. .+.+||||+|++..+.. .+. +.
T Consensus 13 ~~divfvlD~SgSm~~~-~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~------------~~------- 72 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEA-EFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK------------DR------- 72 (202)
T ss_dssp CEEEEEEEECBTTSCHH-HHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT------------CC-------
T ss_pred cccEEEEEECCCCCCHH-HHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC------------CC-------
Confidence 46789999999986433 3678999999999998722 24899999999876542 111 00
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHH-HHHh---cC--CEEEEEeccCCCCCccccccccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFL-ALKS---TG--GKLLVFQSVLPSVGIGALSAREA 684 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~-lL~~---~G--GkIivF~sg~Pt~GpG~L~~red 684 (948)
..++.+.+.|++|... ....+.+|.||+.|.. +++. .+ -.||++++|.++.+.
T Consensus 73 ---------~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~-------- 131 (202)
T 1ijb_A 73 ---------KRPSELRRIASQVKYA----GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRM-------- 131 (202)
T ss_dssp ---------CCHHHHHHHHHTCCCC----CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGG--------
T ss_pred ---------CCHHHHHHHHHhCcCC----CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccc--------
Confidence 1244566677777641 1224789999999974 4432 11 247778887754210
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCcccccccccccccc-CcceEEEeCCCCCCchhhHH
Q 002239 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT-TGGQVYYYYPFSALSDPAKL 763 (948)
Q Consensus 685 ~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~-TGG~v~~y~~F~~~~d~~kL 763 (948)
. +-..+.+.++.+.||.|..+.++. ..|...|..|+.. ++|.+|+..+|+. -.++
T Consensus 132 -~-------------------~~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~~---L~~~ 187 (202)
T 1ijb_A 132 -S-------------------RNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPENKAFVLSSVDE---LEQQ 187 (202)
T ss_dssp -C-------------------TTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTCCCEEESSGGG---HHHH
T ss_pred -h-------------------HHHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcccEEEeCCHHH---HHHH
Confidence 0 002345667778898777776654 3677888888874 5789888887643 2345
Q ss_pred HHHHHHh
Q 002239 764 YNDLRWN 770 (948)
Q Consensus 764 ~~dL~r~ 770 (948)
.++|.+.
T Consensus 188 ~~~i~~~ 194 (202)
T 1ijb_A 188 RDEIVSY 194 (202)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 19
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.48 E-value=1.2e-06 Score=90.51 Aligned_cols=171 Identities=12% Similarity=0.110 Sum_probs=113.1
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCC-CCCCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccCc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP-~~~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvPl 610 (948)
+.-.+||||+|.++.. ++.+++.+++.++.|. ...+.+||||+|++.++.. .+ .|.
T Consensus 22 ~~div~vlD~SgSM~~---~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l------------~~~------- 79 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYP---WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL------------NKY------- 79 (223)
T ss_dssp CEEEEEEEECSTTCCC---HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECT------------TTC-------
T ss_pred cceEEEEEECCCChhh---HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEec------------CCC-------
Confidence 4668999999998753 6789999999999885 2235899999999877532 11 111
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHH-HHhc-C------CEEEEEeccCCCCCccccccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLA-LKST-G------GKLLVFQSVLPSVGIGALSAR 682 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~l-L~~~-G------GkIivF~sg~Pt~GpG~L~~r 682 (948)
..++.+.+.|+.|... ....+.++.||+.|.+. ++.. | ..||++++|.++.|.
T Consensus 80 ---------~~~~~~~~~i~~l~~~----gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~------ 140 (223)
T 2b2x_A 80 ---------SSTEEVLVAANKIVQR----GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY------ 140 (223)
T ss_dssp ---------CSHHHHHHHHTTCCCC----CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG------
T ss_pred ---------CCHHHHHHHHHhhhcc----CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------
Confidence 1123334455555321 12247899999999986 4321 1 247888888765321
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccc--------ccccccccccc-CcceEEEeCC
Q 002239 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYV--------DIASISVIPKT-TGGQVYYYYP 753 (948)
Q Consensus 683 ed~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~v--------DlatL~~Ls~~-TGG~v~~y~~ 753 (948)
-+++.+.++.+.||.|..+.++.+.- +...|..|+.. |||.+|+..+
T Consensus 141 ------------------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~ 196 (223)
T 2b2x_A 141 ------------------------RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSD 196 (223)
T ss_dssp ------------------------GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESS
T ss_pred ------------------------cHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCC
Confidence 03456777888999888887765431 03788999998 9999999887
Q ss_pred CCCCchhhHHHHHHHHhc
Q 002239 754 FSALSDPAKLYNDLRWNI 771 (948)
Q Consensus 754 F~~~~d~~kL~~dL~r~l 771 (948)
+.. -.++.++|.+.+
T Consensus 197 ~~~---L~~i~~~i~~~i 211 (223)
T 2b2x_A 197 ELA---LVTIVKALGERI 211 (223)
T ss_dssp TTG---GGGGHHHHHTTT
T ss_pred HHH---HHHHHHHHHHhh
Confidence 643 345556665544
No 20
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.45 E-value=1e-06 Score=88.87 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=112.0
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCccc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl~~ 612 (948)
+.-.+||||+|.++-.. -++.+++.++..++.|. ..+.+||||+|++.++..- ++.+.
T Consensus 5 ~~div~vlD~SgSm~~~-~~~~~k~~~~~~~~~l~-~~~~~v~vv~f~~~~~~~~--------------~l~~~------ 62 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPH-DFRRMKEFVSTVMEQLK-KSKTLFSLMQYSEEFRIHF--------------TFKEF------ 62 (194)
T ss_dssp CEEEEEEEECCTTSCHH-HHHHHHHHHHHHHHHHC-CTTEEEEEEEESSSEEEEE--------------CHHHH------
T ss_pred CeeEEEEEeCCCCCCHH-HHHHHHHHHHHHHHhcC-CCCeEEEEEEecCCceEEE--------------ecCCc------
Confidence 45689999999987543 36778888888888875 2348999999998765310 00000
Q ss_pred cceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHH-Hh-cCC------EEEEEeccCCCCCccccccccc
Q 002239 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-KS-TGG------KLLVFQSVLPSVGIGALSAREA 684 (948)
Q Consensus 613 ~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL-~~-~GG------kIivF~sg~Pt~GpG~L~~red 684 (948)
..++.+.+.|+.|.. ....+.+|.||+.|.+.| .. .|+ .|+++++|.++ | +
T Consensus 63 -------~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~-~--------d 121 (194)
T 1mf7_A 63 -------QNNPNPRSLVKPITQ-----LLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF-G--------D 121 (194)
T ss_dssp -------HHSCCHHHHHTTCCC-----CCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB-S--------C
T ss_pred -------CCHHHHHHHHHhCcC-----CCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-C--------C
Confidence 012234455666653 234678999999999644 32 232 38888988876 1 0
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCcc---ccccccccccccC-cceEEEeCCCCCCchh
Q 002239 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY---VDIASISVIPKTT-GGQVYYYYPFSALSDP 760 (948)
Q Consensus 685 ~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~---vDlatL~~Ls~~T-GG~v~~y~~F~~~~d~ 760 (948)
.. . +++.+.++.+.||.|..+.++.+. .+...|..|+..+ +|.+|+..+|.. -
T Consensus 122 ~~----~----------------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~---l 178 (194)
T 1mf7_A 122 PL----G----------------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEA---L 178 (194)
T ss_dssp SS----C----------------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGG---G
T ss_pred ch----h----------------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHH---H
Confidence 00 0 122345667889988888876553 2467889999886 588888887643 3
Q ss_pred hHHHHHHHHhcc
Q 002239 761 AKLYNDLRWNIT 772 (948)
Q Consensus 761 ~kL~~dL~r~lt 772 (948)
.++.++|.+.+.
T Consensus 179 ~~~~~~i~~~ic 190 (194)
T 1mf7_A 179 KTIQNQLREKIF 190 (194)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455556655443
No 21
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.45 E-value=3.7e-06 Score=85.35 Aligned_cols=171 Identities=13% Similarity=0.073 Sum_probs=112.3
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccCc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvPl 610 (948)
+.-.+||||+|.++-. ++.+++.+++.++.+.. ..+.+||||+|++..+.. .+. |.
T Consensus 6 ~~div~vlD~SgSm~~---~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~------------~~------- 63 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYP---WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN------------TY------- 63 (200)
T ss_dssp CEEEEEEEECCTTCCC---HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT------------TC-------
T ss_pred cccEEEEEECCCCccc---HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC------------Cc-------
Confidence 4568999999998752 78899999999998862 134899999999877532 111 10
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHH-HHh-cC------CEEEEEeccCCCCCccccccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLA-LKS-TG------GKLLVFQSVLPSVGIGALSAR 682 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~l-L~~-~G------GkIivF~sg~Pt~GpG~L~~r 682 (948)
..++.+.+.|+.|... ....+.+|.||+.|.+. ++. .| ..|+++++|..+.+.
T Consensus 64 ---------~~~~~~~~~i~~l~~~----~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~------ 124 (200)
T 1v7p_C 64 ---------KTKEEMIVATSQTSQY----GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS------ 124 (200)
T ss_dssp ---------SSHHHHHHHHHHCCCC----CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG------
T ss_pred ---------CCHHHHHHHHHhhhcc----CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc------
Confidence 1233445566666421 11247899999999985 432 12 237888888754210
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccC----cccc----ccccccccccCcce-EEEeCC
Q 002239 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQ----TYVD----IASISVIPKTTGGQ-VYYYYP 753 (948)
Q Consensus 683 ed~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~----~~vD----latL~~Ls~~TGG~-v~~y~~ 753 (948)
-+++.+.++.+.||.|..+.+.. ..+| ..+|..|+..|||. +|...+
T Consensus 125 ------------------------~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~ 180 (200)
T 1v7p_C 125 ------------------------MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSD 180 (200)
T ss_dssp ------------------------GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESS
T ss_pred ------------------------cHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCC
Confidence 02456777888999888887742 2344 46789999999886 456666
Q ss_pred CCCCchhhHHHHHHHHhc
Q 002239 754 FSALSDPAKLYNDLRWNI 771 (948)
Q Consensus 754 F~~~~d~~kL~~dL~r~l 771 (948)
|. +-.++.++|.+.+
T Consensus 181 ~~---~l~~i~~~i~~~i 195 (200)
T 1v7p_C 181 EA---ALLEKAGTLGEQI 195 (200)
T ss_dssp SG---GGHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHhhh
Confidence 64 3455666665544
No 22
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.43 E-value=1.4e-08 Score=101.92 Aligned_cols=177 Identities=14% Similarity=0.166 Sum_probs=106.2
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcC-CCCCCceEEEEEeCC-eEEEEecCcCCCCceEeeccCccccccC
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDL-PEGPRTMVGIATFDS-TIHFYNLKRALQQPLMLIVPDVEDVYTP 609 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~L-P~~~rtrVGiITFds-~VhfynL~~~l~qpqmlVvsDldd~FvP 609 (948)
.+..++||||+|.++.. ..++.++++++..++.+ ..+ .+||||+|++ ..+ ..+|
T Consensus 4 ~~~~vv~vlD~SgSM~~-~~~~~~k~~~~~~~~~~~~~~--~~v~lv~f~~~~~~---------------------~~~~ 59 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAV-ARLSEAKGAVELLLGRAYAAR--DHVSLITFRGTAAQ---------------------VLLQ 59 (189)
T ss_dssp SCCEEEEEEECCTTSCC---CHHHHHHHHHHHHHSCTTT--SCCCEEEESBSCCC---------------------BCTT
T ss_pred CCeEEEEEEECCCCCCc-hHHHHHHHHHHHHHHHhcCCC--cEEEEEEECCCCce---------------------EecC
Confidence 35678999999998832 35778899999999887 443 7999999986 221 1111
Q ss_pred ccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc-----CCEEEEEeccCCCCCccccccccc
Q 002239 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSAREA 684 (948)
Q Consensus 610 l~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~red 684 (948)
. ...++.+.+.|+.|.. ...+.++.||+.|..+|+.. ...|+++++|.++.|...-..+++
T Consensus 60 ~--------~~~~~~~~~~i~~l~~------~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~ 125 (189)
T 2x31_A 60 P--------SRSLTQTKRQLQGLPG------GGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANREL 125 (189)
T ss_dssp T--------CSCHHHHHHHHHHCCC------CBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGG
T ss_pred C--------CCCHHHHHHHHhcCCC------CCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccc
Confidence 1 1124455667777752 34678999999999999753 247888899999876431000000
Q ss_pred ccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEEEeCCCCCCchhhHHH
Q 002239 685 EGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLY 764 (948)
Q Consensus 685 ~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~~F~~~~d~~kL~ 764 (948)
... . .. +++.++.+.+|.|..+.+... |...|..|++.|||..++.++ .+.+.|.
T Consensus 126 ~~~---~--~~--------------~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~----~~~~~~~ 180 (189)
T 2x31_A 126 AGE---Q--AT--------------KVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPR----ATAHKMA 180 (189)
T ss_dssp GTC---C--CE--------------EEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHH----HHHHHHH
T ss_pred hhH---H--HH--------------HHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeEEECCC----cchHHHH
Confidence 000 0 00 011112234443333333332 677899999999998665533 2345566
Q ss_pred HHHHHhc
Q 002239 765 NDLRWNI 771 (948)
Q Consensus 765 ~dL~r~l 771 (948)
+.+.+.+
T Consensus 181 ~~~~~~~ 187 (189)
T 2x31_A 181 DVLGAAL 187 (189)
T ss_dssp HHHHHCC
T ss_pred HHHHHhh
Confidence 6555543
No 23
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.42 E-value=2.7e-06 Score=87.21 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=113.0
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCC-CCCCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccCc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP-~~~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvPl 610 (948)
+.-.+||||+|.++.. ++.+++.+++.++.|. ...+.+||||+|++.++.. .+ .|.
T Consensus 7 ~~div~vlD~SgSm~~---~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l------------~~~------- 64 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYP---WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL------------NKY------- 64 (213)
T ss_dssp CEEEEEEEECCTTCCC---HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECT------------TTC-------
T ss_pred CccEEEEEECCCChhh---HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEec------------ccc-------
Confidence 4678999999998753 6788999999998875 2245899999999877532 11 010
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHH-Hh-cC------CEEEEEeccCCCCCccccccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-KS-TG------GKLLVFQSVLPSVGIGALSAR 682 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL-~~-~G------GkIivF~sg~Pt~GpG~L~~r 682 (948)
..++.+.+.|+.|... ....+.+|.||+.|.+.| +. .| ..|+++++|.++.+.
T Consensus 65 ---------~~~~~~~~~i~~l~~~----~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~------ 125 (213)
T 1pt6_A 65 ---------SSTEEVLVAAKKIVQR----GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNH------ 125 (213)
T ss_dssp ---------SSHHHHHHHHHTCCCC----CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSH------
T ss_pred ---------CCHHHHHHHHHhccCC----CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------
Confidence 1123344455555421 122468999999999863 32 11 237888888765320
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccc----c----cccccccccc-CcceEEEeCC
Q 002239 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYV----D----IASISVIPKT-TGGQVYYYYP 753 (948)
Q Consensus 683 ed~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~v----D----latL~~Ls~~-TGG~v~~y~~ 753 (948)
-+++.+.++.+.||.|..+.+..++- + ...|..|+.. |||.+|+..+
T Consensus 126 ------------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~ 181 (213)
T 1pt6_A 126 ------------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSD 181 (213)
T ss_dssp ------------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESS
T ss_pred ------------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCC
Confidence 13456777888999888887764321 1 3678889988 7899999887
Q ss_pred CCCCchhhHHHHHHHHhcc
Q 002239 754 FSALSDPAKLYNDLRWNIT 772 (948)
Q Consensus 754 F~~~~d~~kL~~dL~r~lt 772 (948)
+.. ..++.++|.+.+.
T Consensus 182 ~~~---l~~i~~~l~~~i~ 197 (213)
T 1pt6_A 182 ELA---LVTIVKTLGERIF 197 (213)
T ss_dssp GGG---GGGGHHHHHHHHT
T ss_pred HHH---HHHHHHHHHHhhe
Confidence 643 3455556655554
No 24
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.41 E-value=2.3e-06 Score=86.12 Aligned_cols=173 Identities=14% Similarity=0.105 Sum_probs=112.1
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccCc
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvPl 610 (948)
.+.-++||||+|.++.... ++.+++.++..++.|. ..+.+||||+|++.++.. .+. +.
T Consensus 8 ~~~div~vlD~SgSM~~~~-~~~~~~~~~~~~~~l~-~~~~~v~lv~f~~~~~~~~~~~------------~~------- 66 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRN-FATMMNFVRAVISQFQ-RPSTQFSLMQFSNKFQTHFTFE------------EF------- 66 (198)
T ss_dssp CCEEEEEEEECCTTSCHHH-HHHHHHHHHHHHTTSC-TTTEEEEEEEESSSEEEEECHH------------HH-------
T ss_pred CCeeEEEEEECCCCCCHHH-HHHHHHHHHHHHHhcC-CCCcEEEEEEeCCCccEEEecC------------cc-------
Confidence 3567899999999875433 5688889999999984 334899999999886532 110 00
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHH-HHHHhc-------CCEEEEEeccCCCCCccccccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF-LALKST-------GGKLLVFQSVLPSVGIGALSAR 682 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~-~lL~~~-------GGkIivF~sg~Pt~GpG~L~~r 682 (948)
..++.+.+.|+.|.. ....+.++.||+.|. .+++.. ...|+++++|.++.+.
T Consensus 67 ---------~~~~~~~~~i~~l~~-----~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~------ 126 (198)
T 1n3y_A 67 ---------RRSSNPLSLLASVHQ-----LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------ 126 (198)
T ss_dssp ---------HHCSSGGGGGTTCCC-----CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS------
T ss_pred ---------CCHHHHHHHHhcCcC-----CCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc------
Confidence 000111223333331 234678999999999 444431 1358888888876211
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCcc---ccccccccccccCcceE-EEeCCCCCCc
Q 002239 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY---VDIASISVIPKTTGGQV-YYYYPFSALS 758 (948)
Q Consensus 683 ed~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~---vDlatL~~Ls~~TGG~v-~~y~~F~~~~ 758 (948)
. -+.+.+.++.+.||.|..+.+..+. .|...|..|+..|||.. |...++.
T Consensus 127 ---~--------------------~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~--- 180 (198)
T 1n3y_A 127 ---L--------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFD--- 180 (198)
T ss_dssp ---S--------------------CHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGG---
T ss_pred ---c--------------------cHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHH---
Confidence 0 0244567778899999888887654 36789999999999975 6666653
Q ss_pred hhhHHHHHHHHhc
Q 002239 759 DPAKLYNDLRWNI 771 (948)
Q Consensus 759 d~~kL~~dL~r~l 771 (948)
+..++.++|.+.+
T Consensus 181 ~l~~~~~~i~~~i 193 (198)
T 1n3y_A 181 ALKDIQNQLKEKI 193 (198)
T ss_dssp GGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhe
Confidence 2344555555544
No 25
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.40 E-value=2.8e-06 Score=98.24 Aligned_cols=180 Identities=12% Similarity=0.079 Sum_probs=114.6
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCc
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl 610 (948)
.+.-+|||||+|.++-... ++.+++.|+..++.|.. ..+.+||||+|++..++.- ++.
T Consensus 8 ~~~divfvlD~SgSM~~~~-~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~--------------~l~------ 66 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSEND-FLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM--------------SVL------ 66 (509)
T ss_dssp SEEEEEEEEECSTTSCHHH-HHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE--------------CTT------
T ss_pred CCeeEEEEEeCCCccchhh-HHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE--------------ecc------
Confidence 4567899999999875443 57889999999888731 1238999999998775421 000
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc----C----------CEEEEEeccCCCCCc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST----G----------GKLLVFQSVLPSVGI 676 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~----G----------GkIivF~sg~Pt~Gp 676 (948)
. .....++.+.+.|+.|..... .....+.++.||+.|.++|+.. + ..||++++|..+.|.
T Consensus 67 -~----~~~~~~~~~~~~l~~l~~~~~-~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~ 140 (509)
T 2odp_A 67 -N----DNSRDMTEVISSLENANYKDH-ENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG 140 (509)
T ss_dssp -S----GGGGCHHHHHHHHHTCCGGGG-TTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS
T ss_pred -C----CCCCCHHHHHHHHHhcccccC-CCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC
Confidence 0 011235566777888864321 1135678999999999999541 1 247899999877641
Q ss_pred ccccccccccCCCCCCCccccccccchhHHHHHHHHHH-----HHhcCeEEEEEEccCccccccccccccccCcce--EE
Q 002239 677 GALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIE-----FAEYQVCVDVFITTQTYVDIASISVIPKTTGGQ--VY 749 (948)
Q Consensus 677 G~L~~red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~-----~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~--v~ 749 (948)
... +.-+.+.+. ..+.+|.|..+.+..+..|...|..|+..++|+ ++
T Consensus 141 -~~~-------------------------~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~ 194 (509)
T 2odp_A 141 -SPK-------------------------TAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAF 194 (509)
T ss_dssp -CTH-------------------------HHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEE
T ss_pred -Chh-------------------------HHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeE
Confidence 000 000111111 116677777777766558899999999999998 55
Q ss_pred EeCCCCCCchhhHHHHHHHHh
Q 002239 750 YYYPFSALSDPAKLYNDLRWN 770 (948)
Q Consensus 750 ~y~~F~~~~d~~kL~~dL~r~ 770 (948)
+.+++ +.|.+.+.+.
T Consensus 195 ~~~~~------~~l~~~~~~i 209 (509)
T 2odp_A 195 ILQDT------KALHQVFEHM 209 (509)
T ss_dssp EESSH------HHHHHHHHHH
T ss_pred EecCH------HHHHHHHHhh
Confidence 55443 4455444443
No 26
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.37 E-value=5.8e-06 Score=95.11 Aligned_cols=176 Identities=14% Similarity=0.133 Sum_probs=107.4
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCccc
Q 002239 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (948)
Q Consensus 534 p~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl~~ 612 (948)
.-++||||+|.++-.+ .++.+++.|+..++.|.. ..+.+||||+|++..++.- ++.+
T Consensus 2 ~div~vlD~SgSM~~~-~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~------- 59 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGAS-NFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE------- 59 (497)
T ss_dssp EEEEEEEECSTTTCHH-HHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTS-------
T ss_pred eeEEEEEECCCCcchh-hHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee--------------cccc-------
Confidence 3579999999987543 477888888888887642 2347999999998765421 1111
Q ss_pred cceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHh-----------cCCEEEEEeccCCCCCcccccc
Q 002239 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS-----------TGGKLLVFQSVLPSVGIGALSA 681 (948)
Q Consensus 613 ~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~-----------~GGkIivF~sg~Pt~GpG~L~~ 681 (948)
.....++.+.+.|+.|..... .....+.++.||+.|.++|.. ....||++++|..+.|......
T Consensus 60 ----~~~~~~~~~~~~l~~l~~~~~-~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~ 134 (497)
T 1rrk_A 60 ----ADSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITV 134 (497)
T ss_dssp ----GGGGCHHHHHHHHHHCCGGGS-CCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHH
T ss_pred ----ccccCHHHHHHHHHhCcCccc-cccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHH
Confidence 112335667778888864211 123568899999999999932 2246888999988875311100
Q ss_pred cccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcc--eEEEeCCC
Q 002239 682 REAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG--QVYYYYPF 754 (948)
Q Consensus 682 red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG--~v~~y~~F 754 (948)
.+. .+ +.. .+.+.+..+.+.+|.|..+.++. .+|...|..|+..+|| .+++.+++
T Consensus 135 ~~~-~~---------~~~-------~~~~~~~~~~~~~i~v~~igvG~-~~~~~~L~~iA~~~~g~~~~~~~~~~ 191 (497)
T 1rrk_A 135 IDE-IR---------DLL-------YIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVCKVKDM 191 (497)
T ss_dssp HHH-HH---------HHT-------TCSSCC-CCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEEETTCH
T ss_pred HHH-HH---------HHh-------hhhcccccchhcCeeEEEecCCC-ccCHHHHHHHhcCCCCcceEEEeCCH
Confidence 000 00 000 00000111234477777766653 3688899999999999 66666543
No 27
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.26 E-value=4.4e-06 Score=85.68 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=95.8
Q ss_pred EEEEEEEcchhHHhhh----HHHHHHHHHHHHHhcC-CCCCCceEEEEEeCCe-EEEEecCcCCCCceEeeccCcccccc
Q 002239 535 VFFFLIDVSMNALQTG----ATAAACSAISQVISDL-PEGPRTMVGIATFDST-IHFYNLKRALQQPLMLIVPDVEDVYT 608 (948)
Q Consensus 535 ~yvFvIDVS~~av~sG----~l~~v~~sI~~~L~~L-P~~~rtrVGiITFds~-VhfynL~~~l~qpqmlVvsDldd~Fv 608 (948)
..+|+||+|.++.+.. .++.++++++..+..+ ...++.+||||+|... -++
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~----------------------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV----------------------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE-----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE-----------------------
Confidence 5799999999986432 4777777776654432 1122369999999863 221
Q ss_pred CccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc-----CCEEEEEeccCCCCCcccccccc
Q 002239 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-----GGKLLVFQSVLPSVGIGALSARE 683 (948)
Q Consensus 609 Pl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re 683 (948)
++++...++.|..+|+.|.. ..++++|.||..|.++|++. ..||++|+++.-+ +
T Consensus 61 ------~~plT~d~~~i~~~L~~l~~------~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~---------~ 119 (192)
T 2x5n_A 61 ------LSTLTRDYGKFLSAMHDLPV------RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIV---------E 119 (192)
T ss_dssp ------EEEEESCHHHHHHHHTTCCC------CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCS---------S
T ss_pred ------ecCCCCCHHHHHHHHHcCCC------CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCC---------C
Confidence 12222335667777877542 24689999999999999873 3477888764210 0
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccC
Q 002239 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTT 744 (948)
Q Consensus 684 d~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~T 744 (948)
...-..++++++.+.||.|+++.++.+.-+-. |..+++.+
T Consensus 120 --------------------~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 120 --------------------DEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp --------------------CHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred --------------------CchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 01124678999999999999999987655545 78877774
No 28
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.26 E-value=1.6e-05 Score=79.53 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=105.2
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCcccc
Q 002239 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSD 613 (948)
Q Consensus 534 p~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl~~~ 613 (948)
.-.+||||.|.+.-... ++.+++.++..++.|. ..+.+||||+|++.++..- ++.+
T Consensus 3 ~divfvlD~S~Sm~~~~-~~~~k~~~~~~~~~l~-~~~~rv~vv~fs~~~~~~~--------------~l~~-------- 58 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPDE-FQKILDFMKDVMKKCS-NTSYQFAAVQFSTSYKTEF--------------DFSD-------- 58 (179)
T ss_dssp EEEEEEEECBTTCCHHH-HHHHHHHHHHHHHHTT-TSSEEEEEEEESSSEEEEE--------------CHHH--------
T ss_pred ccEEEEEeCCCCCCHHH-HHHHHHHHHHHHHHhC-CCCeEEEEEEECCceeEEE--------------cCcc--------
Confidence 45799999999864433 6788999999999883 2347999999998775310 0000
Q ss_pred ceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHH-HHHh-cCC------EEEEEeccCCCCCcccccccccc
Q 002239 614 IIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFL-ALKS-TGG------KLLVFQSVLPSVGIGALSAREAE 685 (948)
Q Consensus 614 lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~-lL~~-~GG------kIivF~sg~Pt~GpG~L~~red~ 685 (948)
..+++.++++++.|..+ ...+.+|.||+.|.+ ++.. .|+ .|+++++|.++.+.
T Consensus 59 -----~~~~~~~~~~~~~i~~~-----~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~--------- 119 (179)
T 1mjn_A 59 -----YVKRKDPDALLKHVKHM-----LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSG--------- 119 (179)
T ss_dssp -----HHHHCCHHHHHTTCCCC-----CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCS---------
T ss_pred -----cCCHHHHHHHHHhcccC-----CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCc---------
Confidence 01122356677777653 246789999999985 5543 232 48888888876431
Q ss_pred cCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccc---cccccccccccCcc-eEEEeCCCCCCchhh
Q 002239 686 GRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYV---DIASISVIPKTTGG-QVYYYYPFSALSDPA 761 (948)
Q Consensus 686 ~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~v---DlatL~~Ls~~TGG-~v~~y~~F~~~~d~~ 761 (948)
. . . .+.+|.|-.+.++.... |..+|..|+..++| .+|+..+|.. -.
T Consensus 120 ~-------------~--~------------~~~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~---L~ 169 (179)
T 1mjn_A 120 N-------------I--D------------AAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEK---LK 169 (179)
T ss_dssp C-------------C--G------------GGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGG---SC
T ss_pred c-------------h--H------------HHCCCEEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHH---HH
Confidence 0 0 0 13577776666665432 24789999999987 4777777754 23
Q ss_pred HHHHHHHH
Q 002239 762 KLYNDLRW 769 (948)
Q Consensus 762 kL~~dL~r 769 (948)
++.++|.+
T Consensus 170 ~i~~~i~~ 177 (179)
T 1mjn_A 170 DLCTELQK 177 (179)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHh
Confidence 45555554
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.14 E-value=1.9e-06 Score=104.13 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=110.8
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCc
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl 610 (948)
.+.-++||||.|.++-... ++.+++.+++.|+.|.. ..+.|||||+|++.++..- ++.+.
T Consensus 242 ~~~div~vlD~SgSM~~~~-~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~--------------~l~~~---- 302 (741)
T 3hrz_D 242 GSMNIYLVLDGSGSIGASD-FTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSEA---- 302 (741)
T ss_dssp CEEEEEEEEECSTTTCHHH-HHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTSG----
T ss_pred CceeEEEEeccCCcccccc-hHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE--------------eeccc----
Confidence 4567999999999874433 67788888888888763 2348999999998654321 11100
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHh-----cCC------EEEEEeccCCCCCcccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS-----TGG------KLLVFQSVLPSVGIGAL 679 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~-----~GG------kIivF~sg~Pt~GpG~L 679 (948)
-...++.+.+.|+.|..... .....+.+|.||+.|.+.|.. .++ .||++++|.+|.|..-.
T Consensus 303 -------~~~~~~~~~~~i~~l~~~~~-~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~ 374 (741)
T 3hrz_D 303 -------DSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPI 374 (741)
T ss_dssp -------GGGCHHHHHHHHTTCCGGGG-SSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTH
T ss_pred -------CCcCHHHHHHHHHhcccccc-cCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCch
Confidence 01234556677777763211 134567899999999999821 112 48899999998764211
Q ss_pred cccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcce--EEEeCCC
Q 002239 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQ--VYYYYPF 754 (948)
Q Consensus 680 ~~red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~--v~~y~~F 754 (948)
...+ ..+ ......+.++++.+.+|.|..+.++. .+|...|..|+..++|. +|+..+|
T Consensus 375 ~~~~-~i~----------------~~~~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~g~~~~~~~~~~ 433 (741)
T 3hrz_D 375 TVID-EIR----------------DLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDM 433 (741)
T ss_dssp HHHH-HHH----------------HHTTCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEECBSSH
T ss_pred HHHH-HHH----------------HHhhcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCCCcceEEEeCCH
Confidence 1000 000 00000112334456777777766654 47778899999999996 6666654
No 30
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.96 E-value=2e-05 Score=93.23 Aligned_cols=147 Identities=10% Similarity=0.095 Sum_probs=87.4
Q ss_pred cEEEEEEEcchhHHhh-----hHHHHHHHHHHHHHhcC-CCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccc
Q 002239 534 AVFFFLIDVSMNALQT-----GATAAACSAISQVISDL-PEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVY 607 (948)
Q Consensus 534 p~yvFvIDVS~~av~s-----G~l~~v~~sI~~~L~~L-P~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~F 607 (948)
-..|||||+|.++.+. ..|+.++++|...++.. -..+..+||||+|++.-.--.+........+.++
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl------- 80 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVH------- 80 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEE-------
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEe-------
Confidence 4689999999988642 36888999999888841 0112259999999865321001100001111222
Q ss_pred cCccccceeehH-HhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhc------C-CEEEEEeccCCCCCcccc
Q 002239 608 TPLQSDIIVPVS-ECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST------G-GKLLVFQSVLPSVGIGAL 679 (948)
Q Consensus 608 vPl~~~lLv~l~-Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~------G-GkIivF~sg~Pt~GpG~L 679 (948)
.++. ...+.|..|.+.|. ......++|.||.+|..+|++. + =+||+|++|--+.|.
T Consensus 81 --------~~l~~~~~~~l~~l~~~l~-----~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~--- 144 (565)
T 1jey_B 81 --------RHLMLPDFDLLEDIESKIQ-----PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK--- 144 (565)
T ss_dssp --------EEEECCCHHHHHHHHTTCC-----CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC---
T ss_pred --------ecCCCCCHHHHHHHHhhcc-----CCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCH---
Confidence 2221 11233333322242 1124678999999999999764 2 268999887533310
Q ss_pred cccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEE-EEEccC
Q 002239 680 SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVD-VFITTQ 729 (948)
Q Consensus 680 ~~red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVD-lFl~s~ 729 (948)
.-..++++++.+.||.|+ ++.+..
T Consensus 145 --------------------------~~~~~~a~~l~~~gI~i~~vig~g~ 169 (565)
T 1jey_B 145 --------------------------SQLDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp --------------------------TTHHHHHHHHHHTTEEEEEEESSCC
T ss_pred --------------------------HHHHHHHHHHHhcCcEEEEEeccCC
Confidence 013678999999999999 665543
No 31
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.95 E-value=5.7e-05 Score=76.77 Aligned_cols=152 Identities=12% Similarity=0.059 Sum_probs=95.0
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccC
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTP 609 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvP 609 (948)
.+.-.+||||.|.+.-... ++.+++.+++.++.|.. ....+||||+|++.++.. .+. +.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~-~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~------------~~------ 80 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEAD-FNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFS------------EA------ 80 (199)
T ss_dssp CCCEEEEEEECCTTTCHHH-HHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTT------------SC------
T ss_pred CCcCEEEEEECCCCCCHHH-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecC------------Cc------
Confidence 4567899999999875433 67889999999999852 234899999999877542 111 00
Q ss_pred ccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHH-H-hcCC------EEEEEeccCCCCCcccccc
Q 002239 610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-K-STGG------KLLVFQSVLPSVGIGALSA 681 (948)
Q Consensus 610 l~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL-~-~~GG------kIivF~sg~Pt~GpG~L~~ 681 (948)
..++.+.+.|+.|... ....+.+|.||+.|.+.+ . ..|. .||++++|..+
T Consensus 81 ----------~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~-------- 138 (199)
T 3zqk_A 81 ----------QSKGDILQRLREIRYQ----GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPAS-------- 138 (199)
T ss_dssp ----------CCHHHHHHHHHHCCCC----CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCS--------
T ss_pred ----------CCHHHHHHHHHhCcCC----CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCc--------
Confidence 1244456667777531 122478999999998743 2 2232 36677776421
Q ss_pred cccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCccccccccccccccCcceEEEeCCCCC
Q 002239 682 REAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSA 756 (948)
Q Consensus 682 red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~TGG~v~~y~~F~~ 756 (948)
+..+ + + ..+|.|-.+.++. ..|..+|..|+. +|..|+..+|+.
T Consensus 139 --d~v~---------~--~----------------~~~v~v~~iGiG~-~~~~~~L~~iA~--~~~~~~~~~~~~ 181 (199)
T 3zqk_A 139 --DEIK---------R--L----------------PGDIQVVPIGVGP-NANVQELERIGW--PNAPILIQDFET 181 (199)
T ss_dssp --SCCC---------C--C----------------CTTEEEEEEEEST-TCCHHHHHHHHT--TSCCEEESCTTT
T ss_pred --hHHH---------H--H----------------hCCCEEEEEEcCC-CCCHHHHHHHhC--CCceEEeCCHHH
Confidence 1010 0 0 1455444444432 678888999987 566677777753
No 32
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.92 E-value=0.0002 Score=71.37 Aligned_cols=142 Identities=16% Similarity=0.118 Sum_probs=90.4
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccCc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~-~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvPl 610 (948)
+.-++||||+|.++-.. -++.+++.|+..++.|... ...+||||+|++.++.. .+. +..
T Consensus 17 ~~divfvlD~SgSm~~~-~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~------------~~~------ 77 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQ-NFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQ------------SPN------ 77 (178)
T ss_dssp CEEEEEEEECCTTTCHH-HHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTT------------SGG------
T ss_pred CeeEEEEEECCCCCCHH-HHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCC------------CCC------
Confidence 56789999999987433 3678899999999988632 34899999999887532 111 100
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHh--cC------CEEEEEeccCCCCCccccccc
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TG------GKLLVFQSVLPSVGIGALSAR 682 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~--~G------GkIivF~sg~Pt~GpG~L~~r 682 (948)
.+.++.+.+.|+.|.. ....+.++.||+.|.+.|.. .| ..||++++|.++.+
T Consensus 78 --------~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~------- 137 (178)
T 2xgg_A 78 --------AVDKQLAAHAVLDMPY-----KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSD------- 137 (178)
T ss_dssp --------GSCHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHH-------
T ss_pred --------ccCHHHHHHHHHhCCC-----CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCC-------
Confidence 0134556667777752 23467899999999997632 12 35777888765421
Q ss_pred ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCcccccccc
Q 002239 683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASI 737 (948)
Q Consensus 683 ed~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL 737 (948)
.-+++.+.++.+.||.|..+.+..+ +|-..|
T Consensus 138 -----------------------~~~~~~~~~l~~~gi~v~~igvG~~-~~~~~l 168 (178)
T 2xgg_A 138 -----------------------FRTVRAAKEIRELGGIVTVLAVGHY-VAAALV 168 (178)
T ss_dssp -----------------------HHHSHHHHHHHHTTCEEEEEECC---------
T ss_pred -----------------------ccHHHHHHHHHHCCCEEEEEEcCCc-CCHHHH
Confidence 0134567777888988877776543 444433
No 33
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.70 E-value=4.5e-05 Score=96.76 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=106.6
Q ss_pred CcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEE-ecCcCCCCceEeeccCccccccCcc
Q 002239 533 PAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFY-NLKRALQQPLMLIVPDVEDVYTPLQ 611 (948)
Q Consensus 533 pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~Vhfy-nL~~~l~qpqmlVvsDldd~FvPl~ 611 (948)
+.-.+||||.|.+.-.. -++.+++.+++.++.+.. .+.|||||+|++.++.. .|..- .|
T Consensus 130 ~~DIvfvlD~SgSm~~~-~f~~~k~fv~~lv~~~~~-~~~rVglV~Fs~~~~~~~~lt~~---------~~--------- 189 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSR-NFATMMNFVRAVISQFQR-PSTQFSLMQFSNKFQTHFTFEEF---------RR--------- 189 (1095)
T ss_dssp CEEEEEEEECCTTSCSH-HHHHHHHHHHHHHHSSCS-SSEEEEEEEESSSEEEEECSHHH---------HS---------
T ss_pred CccEEEEEcCCCCCChh-HHHHHHHHHHHHHHhccc-cccEEEEEEECCeEEEEecCccc---------CC---------
Confidence 45589999999987443 367899999999999874 35899999999876542 12110 01
Q ss_pred ccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHH-H-hcCC------EEEEEeccCCCCCcccccccc
Q 002239 612 SDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLAL-K-STGG------KLLVFQSVLPSVGIGALSARE 683 (948)
Q Consensus 612 ~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL-~-~~GG------kIivF~sg~Pt~GpG~L~~re 683 (948)
++.+.+.|+.|..+ ...+.+|.||+.|.+.| + ..|+ .||++++|..+.
T Consensus 190 ----------~~~l~~ai~~i~~~-----gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~--------- 245 (1095)
T 3k6s_A 190 ----------SSNPLSLLASVHQL-----QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEG--------- 245 (1095)
T ss_dssp ----------CSCGGGGTTTCCCC-----CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBS---------
T ss_pred ----------HHHHHHHHhhhhcc-----cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCC---------
Confidence 01112234455432 34678999999998754 2 2333 377777776531
Q ss_pred cccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCcc---ccccccccccccCcc-eEEEeCCCCC
Q 002239 684 AEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY---VDIASISVIPKTTGG-QVYYYYPFSA 756 (948)
Q Consensus 684 d~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~---vDlatL~~Ls~~TGG-~v~~y~~F~~ 756 (948)
+.. -+++.+.++.+.||.|-.+.+...+ +|..+|..|+..++| .+|...+|+.
T Consensus 246 d~~--------------------~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 246 DSL--------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp CSS--------------------CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred Cch--------------------hHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 000 1356677788889887777777653 689999999999887 6776777754
No 34
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.19 E-value=0.013 Score=69.83 Aligned_cols=153 Identities=8% Similarity=0.186 Sum_probs=90.9
Q ss_pred cEEEEEEEcchhHHhhh------HHHHHHHHHHHHHhc----CCCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCc
Q 002239 534 AVFFFLIDVSMNALQTG------ATAAACSAISQVISD----LPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDV 603 (948)
Q Consensus 534 p~yvFvIDVS~~av~sG------~l~~v~~sI~~~L~~----LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDl 603 (948)
-..||+||||.++.+.. .|+.+++.|...|.. .+. .+||||.|++.-. ...++..++++..+|
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~---D~vGlVlfgt~~t----~n~l~~d~i~v~~~L 108 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDR---DLLAVVFYGTEKD----KNSVNFKNIYVLQEL 108 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCC---CEEEEEEESCSSC----BSTTCCTTEEEEEEE
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCC---CeEEEEEEccCCC----CCcCCCCCeEEEecC
Confidence 35799999999886532 688888888888874 343 5999999997642 111222233333332
Q ss_pred cccccCccccceeehHHhHHHHHHHHh-----hccccccCCCCCcccHHHHHHHHHHHHHhcC-----CEEEEEeccCCC
Q 002239 604 EDVYTPLQSDIIVPVSECRQHLELLLE-----SIPSMFQNNRTAESAFGAAVKAAFLALKSTG-----GKLLVFQSVLPS 673 (948)
Q Consensus 604 dd~FvPl~~~lLv~l~Esr~~I~~lLd-----~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~G-----GkIivF~sg~Pt 673 (948)
+.+ +. +....|.++++ .+...+. ...+.++|.||.+|+.+|+..+ =+||+||++--+
T Consensus 109 ~~~----------~~-~~ik~l~~l~~~~~~~~~~~~~g--~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p 175 (609)
T 1jey_A 109 DNP----------GA-KRILELDQFKGQQGQKRFQDMMG--HGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNP 175 (609)
T ss_dssp ECC----------CH-HHHHHHHTTSHHHHHHHHHHHHC--CSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCT
T ss_pred CCC----------CH-HHHHHHHHHhhcccchhhhhhcC--CCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCC
Confidence 211 00 11111111111 0111111 1346789999999999998642 368888886533
Q ss_pred CCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEccCc
Q 002239 674 VGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQT 730 (948)
Q Consensus 674 ~GpG~L~~red~~rsn~~~gt~ke~~Ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~ 730 (948)
.| .++ ....-...+|.++.+.||.|.+|.++..
T Consensus 176 ~~------------------~~~------~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 176 HG------------------NDS------AKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp TT------------------TCH------HHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred CC------------------Cch------HHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 21 000 0012246789999999999999987654
No 35
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=96.83 E-value=0.003 Score=78.47 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=82.8
Q ss_pred CCCcEEEEEEEcchhHHhhh-----HHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEE---ecCcCCCCceEeecc-
Q 002239 531 PMPAVFFFLIDVSMNALQTG-----ATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFY---NLKRALQQPLMLIVP- 601 (948)
Q Consensus 531 p~pp~yvFvIDVS~~av~sG-----~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~Vhfy---nL~~~l~qpqmlVvs- 601 (948)
..+.-.|||||+|.++.... .++.++++++..|+.|....+.|||||+|++.+... .+........-.+..
T Consensus 222 ~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~ 301 (893)
T 2ww8_A 222 SVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLND 301 (893)
T ss_dssp TCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECC
T ss_pred CCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccccccccccccccccc
Confidence 45678999999999986543 467788888888887754345799999999865320 110000000000000
Q ss_pred ----Cccc-cccCccccc-eeehHHhHHHHHHHHhhccccccC-------CCCCcccHHHHHHHHHHHHHh-c--C--CE
Q 002239 602 ----DVED-VYTPLQSDI-IVPVSECRQHLELLLESIPSMFQN-------NRTAESAFGAAVKAAFLALKS-T--G--GK 663 (948)
Q Consensus 602 ----Dldd-~FvPl~~~l-Lv~l~Esr~~I~~lLd~Lp~~f~~-------~~~~~~alG~AL~aA~~lL~~-~--G--Gk 663 (948)
+.+. .|.-...+| .+++...++.|..|.+.|...... .....+.++.||..|..+|+. . + ..
T Consensus 302 ~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kv 381 (893)
T 2ww8_A 302 SLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKV 381 (893)
T ss_dssp CTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEE
T ss_pred ccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeE
Confidence 0000 000000111 234444454555455555432110 113467899999999999974 1 2 24
Q ss_pred EEEEeccCCCCCc
Q 002239 664 LLVFQSVLPSVGI 676 (948)
Q Consensus 664 IivF~sg~Pt~Gp 676 (948)
||++++|.++.+-
T Consensus 382 IILLTDG~pt~~~ 394 (893)
T 2ww8_A 382 IFHITDGVPTMSY 394 (893)
T ss_dssp EEEEESSCCSEEC
T ss_pred EEEEcCCCCCccc
Confidence 8888899999753
No 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.58 E-value=0.11 Score=62.75 Aligned_cols=234 Identities=16% Similarity=0.242 Sum_probs=118.6
Q ss_pred CcEEEEEEEcchhHHhh-hHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEee-ccCc-cccc--
Q 002239 533 PAVFFFLIDVSMNALQT-GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLI-VPDV-EDVY-- 607 (948)
Q Consensus 533 pp~yvFvIDVS~~av~s-G~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlV-vsDl-dd~F-- 607 (948)
|.=.+||||+|.++... .-|+.+...|.+.|..+-++ .||||..|-+.... |.+.. -.++ .++.
T Consensus 111 pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~--~r~Gfgsf~Dk~~~---------P~~~~~p~~~~~~pc~~ 179 (690)
T 3fcs_B 111 PVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSN--LRIGFGAFVDKPVS---------PYMYISPPEALENPCYD 179 (690)
T ss_dssp CEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSC--EEEEEEEECCCSST---------TTSCCCSTTTTTCTTSS
T ss_pred CccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcC--ceEEeEEeeccccC---------CccccChhhhccCCCcC
Confidence 56789999999988442 11233334444455555444 89999999764421 10000 0111 1110
Q ss_pred -----cC-ccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHH--HHHH--hcCCEEEEEeccCCCC--C
Q 002239 608 -----TP-LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF--LALK--STGGKLLVFQSVLPSV--G 675 (948)
Q Consensus 608 -----vP-l~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~--~lL~--~~GGkIivF~sg~Pt~--G 675 (948)
.| ..-...++|.+..+.+.+.|+++.- ..+...+|..|-+.+++|+ .-+. ...-|||||.+-.+-. |
T Consensus 180 ~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~i-sgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~ag 258 (690)
T 3fcs_B 180 MKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSV-SRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIAL 258 (690)
T ss_dssp SSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCC-CCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTT
T ss_pred CCCCCCCCccceeecccCCCHHHHHHHhhceec-cCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCC
Confidence 11 1112235677777777777777652 2334567777766666663 3332 1235899988888755 6
Q ss_pred cccccccc--cccCCCCCCCccccccccchhHH----HHHHHHHHHHhcCeEEEEEEccCcccccccccccc-ccCcceE
Q 002239 676 IGALSARE--AEGRSNISSGEKETHKLLQPADK----TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIP-KTTGGQV 748 (948)
Q Consensus 676 pG~L~~re--d~~rsn~~~gt~ke~~Ll~pa~~----FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls-~~TGG~v 748 (948)
-|+|...- +..+-| +. .+. ++..+.. -..+|.+.+.+++|.+ ||+.....+++. ..|+ ..+|+.+
T Consensus 259 Dg~l~gi~~pnd~~ch-l~-~~~---~y~~s~~~DypSi~ql~~~l~~~~i~~-ifavt~~~~~~y--~~l~~~i~~s~v 330 (690)
T 3fcs_B 259 DGRLAGIVQPNDGQCH-VG-SDN---HYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPGTTV 330 (690)
T ss_dssp GGGGGTCCSCCCCCCC-BC-TTC---BBGGGGTSCCCCHHHHHHHHHHTTCEE-EEEEEGGGHHHH--HHHHHHSTTCEE
T ss_pred CccccceecCCCccee-ec-CCC---ccccccccCCCCHHHHHHHHHHcCCeE-EEEEeCCchhhH--HHHHhhcCCcee
Confidence 77765321 222223 11 110 1111111 1467778888899955 555554444432 2333 2345555
Q ss_pred EEeCCCCCCchhhHHHHHHHHhccCCccccceeEEEe-CCCceEe
Q 002239 749 YYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRC-SQGIQVQ 792 (948)
Q Consensus 749 ~~y~~F~~~~d~~kL~~dL~r~ltr~~g~da~mrVR~-S~GL~V~ 792 (948)
-.... .+.+..+|..+-++.|. -.++|++.. .++|+|+
T Consensus 331 ~~l~~--dSsni~~li~~~y~~i~----s~v~l~~~~~p~~~~v~ 369 (690)
T 3fcs_B 331 GVLSM--DSSNVLQLIVDAYGKIR----SKVELEVRDLPEELSLS 369 (690)
T ss_dssp EEECT--TCTTHHHHHHHHHHHHT----TCEEEEEESCCTTEEEE
T ss_pred eeecc--ccHHHHHHHHHHHHhhh----cceeeeccCCCCcceEE
Confidence 55543 22344555555555443 333444432 5566655
No 37
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.35 E-value=0.011 Score=62.67 Aligned_cols=94 Identities=16% Similarity=0.124 Sum_probs=63.3
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-CCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCc
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-PRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPL 610 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~~-~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl 610 (948)
.+..+|||||+|.++- +-++.++++|++.|..+... .+.+|+||+|++...- . . .++.
T Consensus 133 ~~~~vvfLVDtSgSM~--~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~--------~-~-~ll~--------- 191 (242)
T 3rag_A 133 VALHLVVCLDTSASMR--DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEE--------A-T-RLVQ--------- 191 (242)
T ss_dssp SCEEEEEEEECSGGGT--TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTC--------S-C-EEEE---------
T ss_pred CCCCEEEEEECcccHH--HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCcc--------c-e-eecC---------
Confidence 4678999999999985 46999999999999987632 3589999999964310 0 0 0000
Q ss_pred cccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHh
Q 002239 611 QSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS 659 (948)
Q Consensus 611 ~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~ 659 (948)
+..... .+...|+.|+. ...+.+|.||..|+++++.
T Consensus 192 ------pfT~~~-~~~~~l~~L~a------gG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 192 ------PFSSEV-NVAALEAELVA------RGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp ------EEESSC-CHHHHHHHCCC------CSCCCHHHHHHHHHHHHHH
T ss_pred ------CCCChH-HHHHHHhhCCC------CCCCcHHHHHHHHHHHHHH
Confidence 111111 23445666652 4456799999999999864
No 38
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=95.63 E-value=1.6 Score=50.35 Aligned_cols=238 Identities=15% Similarity=0.225 Sum_probs=119.5
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHH---HHHHHHHhcCCCCCCceEEEEEeCCeEE--EEecCcC--CCCceEeeccCcc
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAAC---SAISQVISDLPEGPRTMVGIATFDSTIH--FYNLKRA--LQQPLMLIVPDVE 604 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~---~sI~~~L~~LP~~~rtrVGiITFds~Vh--fynL~~~--l~qpqmlVvsDld 604 (948)
.|.=.+||+|+|.++... ++.++ ..|.+.|..+-.+ .||||..|-+..- |++.... +..|- .+.+
T Consensus 110 ypvDLy~LmDlS~SM~dd--l~~lk~lg~~L~~~l~~~t~~--~riGfgsFvDk~v~P~~~~~p~~~l~nPc----~~~~ 181 (472)
T 3t3p_B 110 YPVDIYYLMDLSYSMKDD--LWSIQNLGTKLATQMRKLTSN--LRIGFGAFVDKPVSPYMYISPPEALENPC----YDMK 181 (472)
T ss_dssp CCEEEEEEEECSGGGHHH--HHHTTTHHHHHHHHHTTTCSC--EEEEEEEECCCSSTTTSCCCSHHHHHCTT----TTTT
T ss_pred CCceEEEEEccCcchHHH--HHHHHHHHHHHHHHHHhcCcC--cEEEEEEeeccccCccccCChhhhhcCCC----cccc
Confidence 356689999999988542 44444 4444445554443 8999999865421 1111000 00000 0000
Q ss_pred cccc-CccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHH--HHHH--hcCCEEEEEeccCCCC--Ccc
Q 002239 605 DVYT-PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF--LALK--STGGKLLVFQSVLPSV--GIG 677 (948)
Q Consensus 605 d~Fv-Pl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~--~lL~--~~GGkIivF~sg~Pt~--GpG 677 (948)
..-. +..-..++++.+..+.+.+.|+++.- ..+...+|..|.+-+++|+ +-+. ...-||+||.+-.+-. |-|
T Consensus 182 ~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~i-SGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDg 260 (472)
T 3t3p_B 182 TTCLPMFGYKHVLTLTDQVTRFNEEVKKQSV-SRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDG 260 (472)
T ss_dssp SCCCCCCSEEEEEEEESCHHHHHHHHHHCCC-CCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGG
T ss_pred cCCCCCcceeEeeccCCCHHHHHHHHhhccc-cCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCc
Confidence 0000 11112246777777777777777542 2344567777766666664 2232 1236899998888754 778
Q ss_pred cccccc--cccCCCCCCCccccccccchhH----HHHHHHHHHHHhcCeEEEEEEccCcccccccccccccc-CcceEEE
Q 002239 678 ALSARE--AEGRSNISSGEKETHKLLQPAD----KTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT-TGGQVYY 750 (948)
Q Consensus 678 ~L~~re--d~~rsn~~~gt~ke~~Ll~pa~----~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~-TGG~v~~ 750 (948)
+|...- +..+-| +. .+. ++..+. .-...|...+.+++|.+ ||+......++. ..|+++ .|+.+-.
T Consensus 261 kL~GIv~pnDg~CH-L~-~~~---~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~ 332 (472)
T 3t3p_B 261 RLAGIVQPNDGQCH-VG-SDN---HYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPGTTVGV 332 (472)
T ss_dssp GGGTCCCCCCCCCC-BC-TTC---BBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHHHH--HHHHHTSTTCEEEE
T ss_pred cccceecCCCCceE-EC-CCC---cccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchhHH--HHHHHhCCCceeee
Confidence 776432 222233 11 110 111111 12456777888888765 666555544432 222222 3444444
Q ss_pred eCCCCCCchhhHHHHHHHHhccCCccccceeEEE-eCCCceEe
Q 002239 751 YYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVR-CSQGIQVQ 792 (948)
Q Consensus 751 y~~F~~~~d~~kL~~dL~r~ltr~~g~da~mrVR-~S~GL~V~ 792 (948)
... .+...-+|..+-++.|. -.++|+.. ..++|+|+
T Consensus 333 L~~--dSsNiv~LI~~aY~~i~----s~V~l~~~~~p~~l~v~ 369 (472)
T 3t3p_B 333 LSM--DSSNVLQLIVDAYGKIR----SKVELEVRDLPEELSLS 369 (472)
T ss_dssp CCT--TSTTHHHHHHHHHHHHT----TCEEEEEESCCTTEEEE
T ss_pred ccc--cchhHHHHHHHHHHHhh----eEEEEeeCCCCCcEEEE
Confidence 432 22344556666555543 23344433 24566655
No 39
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=95.34 E-value=0.9 Score=52.80 Aligned_cols=271 Identities=15% Similarity=0.168 Sum_probs=130.3
Q ss_pred CCcEEEEEEEcchhHHhhhHHHHHHH---HHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEee--ccCcccc
Q 002239 532 MPAVFFFLIDVSMNALQTGATAAACS---AISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLI--VPDVEDV 606 (948)
Q Consensus 532 ~pp~yvFvIDVS~~av~sG~l~~v~~---sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlV--vsDldd~ 606 (948)
.|-=.+||+|+|.++... ++.+++ .|.+.|..+-.+ -||||..|-+..-. .-....|..+- -.+.++.
T Consensus 131 yPVDLyyLmDlS~SM~dd--l~~lk~lg~~L~~~l~~~t~~--~RiGfGsFvDK~v~---P~~~~~p~~l~~PC~~~~~~ 203 (503)
T 3v4v_B 131 YPVDLYYLMDLSYSMKDD--LERVRQLGHALLVRLQEVTHS--VRIGFGSFVDKTVL---PFVSTVPSKLRHPCPTRLER 203 (503)
T ss_dssp CCEEEEEEEECSGGGHHH--HHHHHHSSHHHHHHHTTTCSC--EEEEEEEECCCSST---TTSCCCHHHHHCCSSCSSSC
T ss_pred CceeEEEEEecCcchhhH--HHHHHHHHHHHHHHHHhhCcC--cEEeeeeecccccC---CcccCCHHHhcCCCcCCCCC
Confidence 356689999999988542 444444 444455555444 89999998543210 00000010000 0000000
Q ss_pred cc-CccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHH--HHHH-hcCCEEEEEeccCCCC--Cccccc
Q 002239 607 YT-PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF--LALK-STGGKLLVFQSVLPSV--GIGALS 680 (948)
Q Consensus 607 Fv-Pl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~--~lL~-~~GGkIivF~sg~Pt~--GpG~L~ 680 (948)
-. +..-.-++++.+..+.+.+.|+.+. ...+...++..|.+-+++|+ +-+. ...-||+||.+-.+-. |-|+|.
T Consensus 204 c~p~f~fr~~l~LT~d~~~F~~~V~~~~-iSGnlD~PEggfDAlmQaavC~~~IgWR~a~rllV~~TDA~fH~agDgkLa 282 (503)
T 3v4v_B 204 CQSPFSFHHVLSLTGDAQAFEREVGRQS-VSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTSDDTFHTAGDGKLG 282 (503)
T ss_dssp CCCCCSEEEEEEEESCSHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTGGGTT
T ss_pred CCCCcceEEEEEecCCHHHHHHHHhhcC-ccCCCCCCchHHHHHHHHhhcccccCCCcceEEEEEECCCCcCcCCCcccc
Confidence 00 0111224566666666666676654 23344567777766666764 2231 1146899998877754 777775
Q ss_pred ccc--cccCCCCCCCccccccccchhH----HHHHHHHHHHHhcCeEEEEEEccCcccccccccccccc-CcceEEEeCC
Q 002239 681 ARE--AEGRSNISSGEKETHKLLQPAD----KTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKT-TGGQVYYYYP 753 (948)
Q Consensus 681 ~re--d~~rsn~~~gt~ke~~Ll~pa~----~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~-TGG~v~~y~~ 753 (948)
..- +..+-| +. .+. ++..+. .-...|...+.+++|.+ ||+......++. ..|+++ .|+.+-....
T Consensus 283 GIv~pNDg~CH-L~-~~~---~Yt~s~~~DYPSv~ql~~kL~ennI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~Ls~ 354 (503)
T 3v4v_B 283 GIFMPSDGHCH-LD-SNG---LYSRSTEFDYPSVGQVAQALSAANIQP-IFAVTSAALPVY--QELSKLIPKSAVGELSE 354 (503)
T ss_dssp TCCSCCCSSCC-BC-TTS---BBGGGGGSCCCCHHHHHHHHHHHTEEE-EEEECSSSHHHH--HHHHTTSTTCEEEECCT
T ss_pred ceecCCCCCeE-EC-CCC---ccccccccCCCCHHHHHHHHHhcCCeE-EEEEcccchhHH--HHHHHhCCCceeeEccc
Confidence 432 222333 11 111 111111 12456777888889854 566666544432 233332 3444444433
Q ss_pred CCCCchhhHHHHHHHHhccCCccccceeEEEe-CCCceEeeee--ccccc-CCC--CceeecCCCCCceEEEEEEec
Q 002239 754 FSALSDPAKLYNDLRWNITRPQGFEAVMRVRC-SQGIQVQEYH--GNFCK-RIP--TDIDLPAIDCNKAIMVTLKHD 824 (948)
Q Consensus 754 F~~~~d~~kL~~dL~r~ltr~~g~da~mrVR~-S~GL~V~~~~--Gnf~~-rst--~~~~lp~id~dtSia~el~~d 824 (948)
.+...-+|..+-++.|. -.++|+... .++|+|+-.- ++... .+. ..-...++.-...+.|++++.
T Consensus 355 --dSsNiv~LI~~aY~~i~----S~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~ 425 (503)
T 3v4v_B 355 --DSSNVVQLIMDAYNSLS----STVTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQ 425 (503)
T ss_dssp --TSCTHHHHHHHHHHHHH----TCEEEECCCCCTTEEEEBCEECSSSCCCCCCCBSSEEECSCCTTCEEEEEEEEE
T ss_pred --cchhHHHHHHHHHHHhh----eEEEEecCCCCCceEEEEEEecCCCCccCcccccCCcccCcccCCEEEEEEEEE
Confidence 22334555555555443 233333322 4567765321 11000 000 112345555666666665554
No 40
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=95.30 E-value=0.38 Score=55.28 Aligned_cols=237 Identities=14% Similarity=0.239 Sum_probs=118.4
Q ss_pred CcEEEEEEEcchhHHhh-hHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCe-EE-EEecC-cCCCCceEeeccCcccccc
Q 002239 533 PAVFFFLIDVSMNALQT-GATAAACSAISQVISDLPEGPRTMVGIATFDST-IH-FYNLK-RALQQPLMLIVPDVEDVYT 608 (948)
Q Consensus 533 pp~yvFvIDVS~~av~s-G~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~-Vh-fynL~-~~l~qpqmlVvsDldd~Fv 608 (948)
|-=.+|++|+|.++... .-|+.+...|.+.|..+-.+ -||||..|-+. |. |.+.. ..+..|---. .+-+..|
T Consensus 122 PVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~--~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~-~~c~~~f- 197 (454)
T 3vi3_B 122 PIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSD--FRIGFGSFVEKTVMPYISTTPAKLRNPCTSE-QNCTTPF- 197 (454)
T ss_dssp CEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSS--EEEEEEEECCCSSTTTSCCSTTTTTCCSCSS-SCCCCCC-
T ss_pred ceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCC--eEEEEEEEeccccCCcccCChHHhcCCCcCc-cCCCCCc-
Confidence 56689999999988542 11334444444555555444 89999988643 21 11110 1111110000 0000111
Q ss_pred CccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHH--HHH--hcCCEEEEEeccCCCC--Cccccccc
Q 002239 609 PLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFL--ALK--STGGKLLVFQSVLPSV--GIGALSAR 682 (948)
Q Consensus 609 Pl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~--lL~--~~GGkIivF~sg~Pt~--GpG~L~~r 682 (948)
.-..++++.+..+.+++.++++. ...+...++..|-+-+++|+- -+. . .-||+||.+-.+-. |-|+|-..
T Consensus 198 --~fr~~l~LT~d~~~F~~~V~~~~-isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~fH~agDgkL~GI 273 (454)
T 3vi3_B 198 --SYKNVLSLTNKGEVFNELVGKQR-ISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGI 273 (454)
T ss_dssp --SEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTTTGGGTC
T ss_pred --ceeeeeecCCCHHHHHHHHhhcc-ccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCCcCcCCCccccce
Confidence 11225677777777777777754 233445677777666666642 121 2 45899998887754 88887543
Q ss_pred c--cccCCCCCCCccccccccchhH----HHHHHHHHHHHhcCeEEEEEEccCccccccccccccccC-cceEEEeCCCC
Q 002239 683 E--AEGRSNISSGEKETHKLLQPAD----KTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTT-GGQVYYYYPFS 755 (948)
Q Consensus 683 e--d~~rsn~~~gt~ke~~Ll~pa~----~FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~~T-GG~v~~y~~F~ 755 (948)
- +..+-|.. +. .+..+. .-.-.|++.+.+++|-+ ||+......++. ..|+++- |+.+-....
T Consensus 274 v~PNDg~CHL~---~~---~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~Ls~-- 342 (454)
T 3vi3_B 274 VLPNDGQCHLE---NN---MYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVY--KELKNLIPKSAVGTLSA-- 342 (454)
T ss_dssp CSCCCCCCCEE---TT---EECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHH--HHHHHHSTTEEEEEECT--
T ss_pred ecCCCCccEeC---CC---cccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHH--HHHHHhCCCceeeEccc--
Confidence 2 22333311 11 111111 12567888889999876 565555544432 2233222 333444332
Q ss_pred CCchhhHHHHHHHHhccCCccccceeEEEe-CCCceEe
Q 002239 756 ALSDPAKLYNDLRWNITRPQGFEAVMRVRC-SQGIQVQ 792 (948)
Q Consensus 756 ~~~d~~kL~~dL~r~ltr~~g~da~mrVR~-S~GL~V~ 792 (948)
.+...-+|..+-++.|. -.++|+... .+||+|+
T Consensus 343 dSsNiv~LI~~aY~~i~----S~V~l~~~~~p~~l~v~ 376 (454)
T 3vi3_B 343 NSSNVIQLIIDAYNSLS----SEVILENGKLSEGVTIS 376 (454)
T ss_dssp TCTTHHHHHHHHHHHHH----TCEEEEECCCCTTEEEE
T ss_pred cchhHHHHHHHHHHHhh----eEEEEecCCCCCceEEE
Confidence 22334455555554443 233333322 4466554
No 41
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=95.27 E-value=0.054 Score=65.47 Aligned_cols=204 Identities=18% Similarity=0.279 Sum_probs=101.4
Q ss_pred CcEEEEEEEcchhHHhh-hHHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEE-E-ec-CcCCCCceEeeccCcccccc
Q 002239 533 PAVFFFLIDVSMNALQT-GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHF-Y-NL-KRALQQPLMLIVPDVEDVYT 608 (948)
Q Consensus 533 pp~yvFvIDVS~~av~s-G~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~Vhf-y-nL-~~~l~qpqmlVvsDldd~Fv 608 (948)
|.=.+||||+|.++... .-|+.+...|.+.|..+-++ .||||..|-+.... | +. ...+..|- .+.+....
T Consensus 104 pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~--~r~GfgsFvDk~~~P~~~~~p~~~~~Pc----~~~~~~c~ 177 (687)
T 3k6s_B 104 PIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITES--GRIGFGSFVDKTVLPFVNTHPDKLRNPC----PNKEKECQ 177 (687)
T ss_dssp CCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCS--CEEEEEEECCCSSTTSSCCSSTTTTCCC----CSCCCCCC
T ss_pred ceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcC--cEEeeEEeeccccCCccccCchhccCCC----CCCCCCcC
Confidence 56789999999988442 11333344455566666554 89999999754311 0 00 00011110 00000001
Q ss_pred C-ccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHH--HHHH-hcCCEEEEEeccCCCC--Cccccccc
Q 002239 609 P-LQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAF--LALK-STGGKLLVFQSVLPSV--GIGALSAR 682 (948)
Q Consensus 609 P-l~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~--~lL~-~~GGkIivF~sg~Pt~--GpG~L~~r 682 (948)
| ..-..+++|.+..+.+.+.|+.+.- ..+...+|..|-+.++||+ +-+. ...-|||||.+-.+.. |-|+|-..
T Consensus 178 ~~f~f~~~l~lt~~~~~F~~~v~~~~i-sgn~D~PE~g~dAl~qa~vc~~~igWr~a~rllV~~TDa~~H~agDg~l~gi 256 (687)
T 3k6s_B 178 PPFAFRHVLKLTNNSNQFQTEVGKQLI-SGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDGFHFAGDGKLGAI 256 (687)
T ss_dssp CCCSCEEEEEEESCSHHHHHHHHTSCC-CCCSSSSCCHHHHHHHHTTCHHHHCCCSSCCEEEEECSSCCCCTTGGGGGTC
T ss_pred CcccceeecccCCCHHHHHHHHhhccc-cCCCCCCchHHHHHHHHhhcccccCCccceEEEEEECCCccccCCCccccce
Confidence 1 1112245666666666777776652 2344567777766666653 3331 1157899998877754 67776432
Q ss_pred c--cccCCCCCCCccccccccchhHH----HHHHHHHHHHhcCeEEEEEEccCccccccccccccc-cCcceEEEeC
Q 002239 683 E--AEGRSNISSGEKETHKLLQPADK----TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPK-TTGGQVYYYY 752 (948)
Q Consensus 683 e--d~~rsn~~~gt~ke~~Ll~pa~~----FYk~LA~~~~~~gIsVDlFl~s~~~vDlatL~~Ls~-~TGG~v~~y~ 752 (948)
- +..+-|.. +. ++..+.. -..+|++.+.+++|.+ ||+.....+++. ..|++ .+|+.+-...
T Consensus 257 ~~pndg~Chl~---~~---~y~~s~~~DyPS~~ql~~~l~~~~I~~-ifavt~~~~~~y--~~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 257 LTPNDGRCHLE---DN---LYKRSNEFDYPSVGQLAHKLAENNIQP-IFAVTSRMVKTY--EKLTEIIPKSAVGELS 324 (687)
T ss_dssp CCCCCSCCCCS---SS---BCSSGGGSCCCCGGGHHHHHHHTTCBC-CEEECGGGHHHH--HHHHHHSSSCCEEECC
T ss_pred ecCCCCccccC---CC---ccccccccCCCCHHHHHHHHHHcCCeE-EEEEeccchhhH--HHHHhhcCCceeeeec
Confidence 1 22222311 00 1111111 1245677777888854 455444444432 23332 2345555544
No 42
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=94.76 E-value=0.027 Score=66.14 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=58.9
Q ss_pred CCCCcEEEEEEEcchhHHhh--h-HHHHHHHH-HHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccc
Q 002239 530 DPMPAVFFFLIDVSMNALQT--G-ATAAACSA-ISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVED 605 (948)
Q Consensus 530 ~p~pp~yvFvIDVS~~av~s--G-~l~~v~~s-I~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd 605 (948)
+..+..++|+||+|.++... | .++....+ +...+....+ .+||||+|++.+...
T Consensus 365 ~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~---d~vglv~Fs~~~~~~------------------- 422 (538)
T 1yvr_A 365 EPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTE---KDSHMVAFSDEMLPC------------------- 422 (538)
T ss_dssp CCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHC---SSEEEEEESSSEECC-------------------
T ss_pred CCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccC---CceEEEEECCCceEc-------------------
Confidence 35667899999999987531 1 12221111 2222222222 479999999643211
Q ss_pred cccCccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhcCCEEEEEeccCCCC
Q 002239 606 VYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSV 674 (948)
Q Consensus 606 ~FvPl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~ 674 (948)
|+..+ .. |..+|+.|..+ ...++.++.||..|... +.....||++++|..+.
T Consensus 423 ---~~t~~--------~~-l~~~l~~l~~~----~~GgT~i~~aL~~a~~~-~~~~~~iIliTDg~~~~ 474 (538)
T 1yvr_A 423 ---PITVN--------ML-LHEVVEKMSDI----TMGSTDCALPMLWAQKT-NTAADIFIVFTDCETNV 474 (538)
T ss_dssp ---SCCTT--------SC-HHHHHHHHTTC----CCSCCCTTHHHHHHHHT-TCCCSEEEEEECCCCCS
T ss_pred ---CCCCc--------cc-HHHHHHHHhcC----CCCCCcHHHHHHHHHhc-cCCCCEEEEEcCCCCCC
Confidence 11111 01 34455555432 13356788899988765 33347888899887654
No 43
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=91.95 E-value=2 Score=44.64 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=62.6
Q ss_pred cEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCeEEEEecCcCCCCceEeeccCccccccCccc
Q 002239 534 AVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS 612 (948)
Q Consensus 534 p~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~LP~-~~rtrVGiITFds~VhfynL~~~l~qpqmlVvsDldd~FvPl~~ 612 (948)
-=.+||||+|.++.. .++.+++.+.++++.|.+ ..+.||||..|-.. . |
T Consensus 4 vDl~fl~D~S~SM~~--di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk-~-~-------------------------- 53 (212)
T 2iue_A 4 VDLYFLMGLSGSAQG--HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM-T-F-------------------------- 53 (212)
T ss_dssp EEEEEEEECCGGGTT--THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS-C-E--------------------------
T ss_pred eEEEEEEeCCCcchh--HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC-c-c--------------------------
Confidence 347999999999844 255555555544444321 12389999988544 0 0
Q ss_pred cceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHH--HH--HhcCCEEEEEeccCCCC--Cccccc
Q 002239 613 DIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFL--AL--KSTGGKLLVFQSVLPSV--GIGALS 680 (948)
Q Consensus 613 ~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~--lL--~~~GGkIivF~sg~Pt~--GpG~L~ 680 (948)
...+++.+..+.+++.|+++. ...+...+|..+.+-+++++. -+ +. .-|++||.+-.+-. |-|+|.
T Consensus 54 ~~~l~lT~d~~~F~~~v~~~~-vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~ 125 (212)
T 2iue_A 54 QHILKLTADSSQFQRELRKQL-VSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLG 125 (212)
T ss_dssp EEEEEEESCHHHHHHHHHTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGG
T ss_pred eecCCcCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCcccc
Confidence 001223333444555555532 122234566666554555432 12 23 67888888877754 445554
No 44
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=79.52 E-value=2 Score=50.45 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=57.3
Q ss_pred CCCCcEEEEEEEcchhHHhhh--------HHHHHHHHHHHHHhcCCCCCCceEEEEEeCCeEEEEecCcCCCCceEeecc
Q 002239 530 DPMPAVFFFLIDVSMNALQTG--------ATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVP 601 (948)
Q Consensus 530 ~p~pp~yvFvIDVS~~av~sG--------~l~~v~~sI~~~L~~LP~~~rtrVGiITFds~VhfynL~~~l~qpqmlVvs 601 (948)
++..-.++++||+|.++...+ .++.+ .+|. +-.+..+ .+|+||+|++.+....+..
T Consensus 359 ~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~A-a~la--~~~~r~~--d~v~lv~Fs~~~~~~~~~~----------- 422 (535)
T 2nvo_A 359 QPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAA-AAMS--LIALRTE--PDALTMGFAEQFRPLGITP----------- 422 (535)
T ss_dssp CCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHH-HHHH--HHHHHHS--SEEEEEEEBSSEEECCCCT-----------
T ss_pred CCCCceEEEEEECCccccCCCCCCCCcccHHHHH-HHHH--HHHcCcC--CceEEEEECCcceEcCCCc-----------
Confidence 356678999999999875411 12211 1221 1112122 4899999987553221110
Q ss_pred CccccccCccccceeehHHhHHHHHHHHhhccccccCCCCCcccHHHHHHHHHHHHHhcCCEEEEEeccCCCC
Q 002239 602 DVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSV 674 (948)
Q Consensus 602 Dldd~FvPl~~~lLv~l~Esr~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~ 674 (948)
+ +.|.++|+.|.... ..++.++.||..+.... .....||+++++--+.
T Consensus 423 ----------~----------~~l~~~l~~l~~~~----~ggTdi~~~l~~a~~~~-~~~~~vIliTD~~~~~ 470 (535)
T 2nvo_A 423 ----------R----------DTLESAMQKAQSVS----FGGTDCAQPILWAAQER-LDVDTFVVYTDNETWA 470 (535)
T ss_dssp ----------T----------CCHHHHHHHTCCSS----BCCCCTTHHHHHHHHTT-CCCSEEEEEESSCCCC
T ss_pred ----------c----------hhHHHHHHHHhhCC----CCCccHHHHHHHHHHhc-CCCCEEEEEeCCCccC
Confidence 0 11334566665432 23556777887765432 2357888899876544
No 45
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=66.34 E-value=1.3 Score=38.62 Aligned_cols=19 Identities=21% Similarity=0.793 Sum_probs=16.9
Q ss_pred CeEEEccCCCCCCCCcccc
Q 002239 477 RRFICSLCGFTDETPRDYH 495 (948)
Q Consensus 477 ~~W~CnfC~~~N~vP~~Y~ 495 (948)
-.|+|.+|...|.++.+|.
T Consensus 16 ~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEFT 34 (76)
T ss_dssp EEEECTTTCCEEEESSCCC
T ss_pred cceECccccccCcCccccC
Confidence 5899999999999998764
No 46
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=63.59 E-value=1.8 Score=36.03 Aligned_cols=27 Identities=22% Similarity=0.588 Sum_probs=19.0
Q ss_pred CccCCCCCceeccCceEecCCCeEEEccCCC
Q 002239 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (948)
Q Consensus 456 pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~ 486 (948)
.--|.||+.++.- ..+.-.|+||+|..
T Consensus 33 ~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 33 TKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CeeecccCCEeee----cCCeEEEEehhhhh
Confidence 4557888887654 33456899999964
No 47
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=43.86 E-value=7.1 Score=33.77 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=21.1
Q ss_pred CccCCCCCceeccCceEecCCCeEEEccCCCCCCCC
Q 002239 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETP 491 (948)
Q Consensus 456 pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N~vP 491 (948)
++||. |+.+ .-..++.+.-+|. ||..-.+-
T Consensus 4 vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 4 IFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred EEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence 68999 9997 2224455566798 99877653
No 48
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=41.66 E-value=20 Score=37.93 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCeEEEEEEccC-c---cccccccccccccCcceEEEeC
Q 002239 709 KAMAIEFAEYQVCVDVFITTQ-T---YVDIASISVIPKTTGGQVYYYY 752 (948)
Q Consensus 709 k~LA~~~~~~gIsVDlFl~s~-~---~vDlatL~~Ls~~TGG~v~~y~ 752 (948)
.+.|+.+.+.||.|+.+.+.. + ..|..+|..+++.|||..|+..
T Consensus 28 ~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~ 75 (242)
T 3rag_A 28 VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQ 75 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEEC
T ss_pred HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEee
Confidence 356778889999999999853 2 3467889999999999999874
No 49
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=41.40 E-value=5.2 Score=40.89 Aligned_cols=31 Identities=29% Similarity=0.625 Sum_probs=21.6
Q ss_pred CCCCCccCCCCCc-eeccCceEecCCCeEEEccCC
Q 002239 452 GDMGPVRCSRCKA-YINPFMKFIDQGRRFICSLCG 485 (948)
Q Consensus 452 g~~~pvRC~rCrA-YINPf~~f~d~G~~W~CnfC~ 485 (948)
+.....+|++|++ ||...-. ..+.++|.||+
T Consensus 130 ~~L~l~~C~~Cgg~fv~~~~~---~~~~f~Cp~C~ 161 (192)
T 2avu_E 130 GLLQLSSCNCCGGNFITHAHQ---PVGSFACSLCQ 161 (192)
T ss_dssp TSEEEEECTTTCCEEEEESSC---CSSCCCCTTC-
T ss_pred CceeeCcCCCCCCCeeCccCC---CCCCCcCCCCC
Confidence 3445789999987 5544432 34689999999
No 50
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=39.83 E-value=10 Score=32.39 Aligned_cols=31 Identities=29% Similarity=0.849 Sum_probs=27.0
Q ss_pred CCccCCCCCceeccCceEecCCCeEEEccCCC
Q 002239 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (948)
Q Consensus 455 ~pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~ 486 (948)
.+..|.+|++--.|..+-...|. ..||-||.
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 47889999999999998777776 99999984
No 51
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.81 E-value=7.3 Score=38.44 Aligned_cols=33 Identities=12% Similarity=0.475 Sum_probs=23.0
Q ss_pred ccCCCCCceeccCceE-ecCCCeEEEccCCCCCC
Q 002239 457 VRCSRCKAYINPFMKF-IDQGRRFICSLCGFTDE 489 (948)
Q Consensus 457 vRC~rCrAYINPf~~f-~d~G~~W~CnfC~~~N~ 489 (948)
..|..|+-+++--|.. ......|+|++|...-+
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 5677777777666662 33457899999986654
No 52
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.35 E-value=8.8 Score=35.58 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=26.4
Q ss_pred CCccCCCCCceeccCceEecCCCeEEEccCCCCCCCCcccc
Q 002239 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYH 495 (948)
Q Consensus 455 ~pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N~vP~~Y~ 495 (948)
.+.+|++|+--+ . ..-++.-+|+.|+..|-.+..|.
T Consensus 66 ~p~~C~~CG~~F---~--~~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 66 KPAQCRKCGFVF---K--AEINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp CCCBBTTTCCBC---C--CCSSCCSSCSSSCCCCBCCCCEE
T ss_pred ECcChhhCcCee---c--ccCCCCCCCcCCCCCccCCccee
Confidence 379999999653 1 23346689999999997766654
No 53
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=36.53 E-value=34 Score=26.87 Aligned_cols=29 Identities=17% Similarity=0.625 Sum_probs=22.1
Q ss_pred CccCCCCCceeccCceEecCCCeEEEccCCCC
Q 002239 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (948)
Q Consensus 456 pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~ 487 (948)
...|..|++- -..++.....++|..||..
T Consensus 5 ~~~CP~C~~~---~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACESA---ELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSCC---CEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCCc---ceEEcCCCCeEECcccCCc
Confidence 5679999981 2455666678999999974
No 54
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.66 E-value=14 Score=32.35 Aligned_cols=31 Identities=13% Similarity=0.428 Sum_probs=22.3
Q ss_pred ccCCCCCceeccCceEecCCCeEEEccCCCC
Q 002239 457 VRCSRCKAYINPFMKFIDQGRRFICSLCGFT 487 (948)
Q Consensus 457 vRC~rCrAYINPf~~f~d~G~~W~CnfC~~~ 487 (948)
..|..|+--+.-.|+....+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4566677667777776665578999999654
No 55
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=34.79 E-value=17 Score=28.77 Aligned_cols=9 Identities=33% Similarity=1.261 Sum_probs=5.4
Q ss_pred eEEEccCCC
Q 002239 478 RFICSLCGF 486 (948)
Q Consensus 478 ~W~CnfC~~ 486 (948)
.|+|+.|+.
T Consensus 30 dw~CP~Cg~ 38 (46)
T 6rxn_A 30 DWCCPVCGV 38 (46)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666664
No 56
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=34.46 E-value=11 Score=29.48 Aligned_cols=30 Identities=27% Similarity=0.804 Sum_probs=24.6
Q ss_pred CccCCCCCceeccCceEecCCCeEEEccCCC
Q 002239 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (948)
Q Consensus 456 pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~ 486 (948)
+..|.+|++--.|..+-..+|. ..||-||.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 3579999999999888777776 89999984
No 57
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.26 E-value=17 Score=34.96 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=23.2
Q ss_pred ccCCCCCceeccCceEec----CCCeEEEccCCCCCC
Q 002239 457 VRCSRCKAYINPFMKFID----QGRRFICSLCGFTDE 489 (948)
Q Consensus 457 vRC~rCrAYINPf~~f~d----~G~~W~CnfC~~~N~ 489 (948)
..|..|+-+++--|.... ....|+|++|...-+
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 567777777777776543 235899999987544
No 58
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=32.33 E-value=46 Score=31.71 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCC-CCCceEEEEEeCCeE
Q 002239 553 AAACSAISQVISDLPE-GPRTMVGIATFDSTI 583 (948)
Q Consensus 553 ~~v~~sI~~~L~~LP~-~~rtrVGiITFds~V 583 (948)
+.++++|+..+..-|. ..+++|-+++||..|
T Consensus 113 e~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V 144 (147)
T 1b3t_A 113 EVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGV 144 (147)
T ss_dssp HHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCcceEEEEEeCCCCc
Confidence 4789999988877663 245899999999876
No 59
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.63 E-value=24 Score=28.55 Aligned_cols=10 Identities=30% Similarity=1.454 Sum_probs=5.6
Q ss_pred eEEEccCCCC
Q 002239 478 RFICSLCGFT 487 (948)
Q Consensus 478 ~W~CnfC~~~ 487 (948)
+|+|..||..
T Consensus 3 ~y~C~~CGyv 12 (52)
T 1e8j_A 3 IYVCTVCGYE 12 (52)
T ss_dssp CEECSSSCCC
T ss_pred cEEeCCCCeE
Confidence 4556666544
No 60
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=30.33 E-value=12 Score=33.61 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=19.4
Q ss_pred CCccCCCCCceeccC-----------ceEecCCCeEEEccCCC
Q 002239 455 GPVRCSRCKAYINPF-----------MKFIDQGRRFICSLCGF 486 (948)
Q Consensus 455 ~pvRC~rCrAYINPf-----------~~f~d~G~~W~CnfC~~ 486 (948)
..-+|..|+-...+- ..|.+--..|+|.+|+.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 357788887544442 23444345688888885
No 61
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.92 E-value=22 Score=30.56 Aligned_cols=31 Identities=26% Similarity=0.656 Sum_probs=17.0
Q ss_pred CccCCCCCceeccC-----------ceEecCCCeEEEccCCC
Q 002239 456 PVRCSRCKAYINPF-----------MKFIDQGRRFICSLCGF 486 (948)
Q Consensus 456 pvRC~rCrAYINPf-----------~~f~d~G~~W~CnfC~~ 486 (948)
.-+|..|+=...+- ..|.+--..|+|++|+.
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCC
Confidence 45677777444331 22333334577777775
No 62
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=29.09 E-value=23 Score=24.35 Aligned_cols=26 Identities=31% Similarity=0.689 Sum_probs=21.5
Q ss_pred cCCCCCceeccCceEecCCCeEEEccC
Q 002239 458 RCSRCKAYINPFMKFIDQGRRFICSLC 484 (948)
Q Consensus 458 RC~rCrAYINPf~~f~d~G~~W~CnfC 484 (948)
.|-.|--|=|-||- ++-|+.|-|.=|
T Consensus 2 ~cvscv~fgngfcg-dncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCG-DNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEE-CSSSCEEECSCC
T ss_pred cceEeEeecCcccc-CCcCCcccccCC
Confidence 37788888899997 667899999876
No 63
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.60 E-value=31 Score=30.58 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=21.3
Q ss_pred CccCCCCCceeccCceEecCCCeEEEccCCCCC
Q 002239 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (948)
Q Consensus 456 pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N 488 (948)
--.|..|++-+ .|......|+|..|++..
T Consensus 27 ~y~Cp~CG~~~----v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 27 DHACPNCGEDR----VDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp CEECSSSCCEE----EEEEETTEEEETTTCCEE
T ss_pred cCcCCCCCCcc----eeccCCCeEECCCCCCEe
Confidence 45799999832 344556799999999764
No 64
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.41 E-value=14 Score=29.21 Aligned_cols=13 Identities=23% Similarity=1.270 Sum_probs=10.5
Q ss_pred CeEEEccCCCCCC
Q 002239 477 RRFICSLCGFTDE 489 (948)
Q Consensus 477 ~~W~CnfC~~~N~ 489 (948)
++|+|.+||..-+
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 5799999998653
No 65
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=25.35 E-value=26 Score=28.67 Aligned_cols=9 Identities=33% Similarity=1.202 Sum_probs=4.4
Q ss_pred eEEEccCCC
Q 002239 478 RFICSLCGF 486 (948)
Q Consensus 478 ~W~CnfC~~ 486 (948)
.|+|++|+.
T Consensus 36 dw~CP~Cga 44 (55)
T 2v3b_B 36 DWVCPDCGV 44 (55)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 455555553
No 66
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.02 E-value=26 Score=31.04 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=5.0
Q ss_pred eEEEccCCC
Q 002239 478 RFICSLCGF 486 (948)
Q Consensus 478 ~W~CnfC~~ 486 (948)
.|+|++|+.
T Consensus 60 dW~CPvCga 68 (81)
T 2kn9_A 60 DWSCPDCGA 68 (81)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 456666653
No 67
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=24.89 E-value=22 Score=33.49 Aligned_cols=35 Identities=23% Similarity=0.609 Sum_probs=25.2
Q ss_pred ccCCCCCceeccCce----EecCC---CeEEEccCCCCCCCC
Q 002239 457 VRCSRCKAYINPFMK----FIDQG---RRFICSLCGFTDETP 491 (948)
Q Consensus 457 vRC~rCrAYINPf~~----f~d~G---~~W~CnfC~~~N~vP 491 (948)
--|++|++++-|-.. +..++ -.|+|..||+..-+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 469999999877633 33332 367899999887765
No 68
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=24.05 E-value=16 Score=29.04 Aligned_cols=30 Identities=27% Similarity=0.783 Sum_probs=25.3
Q ss_pred CccCCCCCceeccCceEecCCCeEEEccCCC
Q 002239 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (948)
Q Consensus 456 pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~ 486 (948)
...|.+|++--.|..+-...|. ..||-||.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 33 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGH-YLCNACGL 33 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCC-CBCSHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCC-ccchHHHH
Confidence 5679999999999888777775 89999985
No 69
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.92 E-value=21 Score=36.51 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=18.1
Q ss_pred CccCCCCCceeccCceEecCCCeEEEccCCCCC
Q 002239 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGFTD 488 (948)
Q Consensus 456 pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N 488 (948)
.-+|..|+-... +...|+|++|+..-
T Consensus 171 ~~~C~~CG~i~~-------g~~p~~CP~C~~~k 196 (202)
T 1yuz_A 171 FHLCPICGYIHK-------GEDFEKCPICFRPK 196 (202)
T ss_dssp EEECSSSCCEEE-------SSCCSBCTTTCCBG
T ss_pred EEEECCCCCEEc-------CcCCCCCCCCCCCh
Confidence 578999985433 23459999999643
No 70
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.79 E-value=20 Score=29.09 Aligned_cols=10 Identities=40% Similarity=1.258 Sum_probs=5.9
Q ss_pred CeEEEccCCC
Q 002239 477 RRFICSLCGF 486 (948)
Q Consensus 477 ~~W~CnfC~~ 486 (948)
..|+|++|+.
T Consensus 34 ~dw~CP~Cg~ 43 (52)
T 1yk4_A 34 DDWVCPLCGA 43 (52)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 4566666664
No 71
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=23.66 E-value=25 Score=32.42 Aligned_cols=41 Identities=20% Similarity=0.480 Sum_probs=31.1
Q ss_pred ccCCCCCceeccCceEec------CCCeEEEccCCCCCCCCcccccC
Q 002239 457 VRCSRCKAYINPFMKFID------QGRRFICSLCGFTDETPRDYHCN 497 (948)
Q Consensus 457 vRC~rCrAYINPf~~f~d------~G~~W~CnfC~~~N~vP~~Y~~~ 497 (948)
-||--|-+|+.|...+.- +...=+|-+||....+.+.|||.
T Consensus 30 GkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~ 76 (109)
T 2k0a_A 30 GKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCW 76 (109)
T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECH
T ss_pred CcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehH
Confidence 689999999999543211 34466899999888888899875
No 72
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=22.46 E-value=22 Score=33.38 Aligned_cols=30 Identities=27% Similarity=0.755 Sum_probs=25.4
Q ss_pred CccCCCCCceeccCceEecCCCeEEEccCCC
Q 002239 456 PVRCSRCKAYINPFMKFIDQGRRFICSLCGF 486 (948)
Q Consensus 456 pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~ 486 (948)
...|.+|++-.-|..+-.+.| .|.||-|+.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 567999999999999876666 699999984
No 73
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=21.01 E-value=3.1e+02 Score=27.76 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHHhcCCEEEEE
Q 002239 644 SAFGAAVKAAFLALKSTGGKLLVF 667 (948)
Q Consensus 644 ~alG~AL~aA~~lL~~~GGkIivF 667 (948)
..+|..|..+..+++..||+|-+=
T Consensus 210 ~G~GLGLai~~~iv~~hGG~i~v~ 233 (247)
T 4fpp_A 210 GGPWVQAAYLNALVRAAGGQIAVE 233 (247)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCccHHHHHHHHHHHHcCCEEEEE
Confidence 355667777889999999999863
No 74
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.36 E-value=26 Score=28.73 Aligned_cols=10 Identities=40% Similarity=1.338 Sum_probs=6.1
Q ss_pred CeEEEccCCC
Q 002239 477 RRFICSLCGF 486 (948)
Q Consensus 477 ~~W~CnfC~~ 486 (948)
..|+|+.|+.
T Consensus 35 ~dw~CP~Cg~ 44 (54)
T 4rxn_A 35 DDWVCPLCGV 44 (54)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCcCCCC
Confidence 4566666664
No 75
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.10 E-value=28 Score=28.24 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=20.3
Q ss_pred CCccCCCCCceeccCceEecCCCeEEEccCCCCCC
Q 002239 455 GPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDE 489 (948)
Q Consensus 455 ~pvRC~rCrAYINPf~~f~d~G~~W~CnfC~~~N~ 489 (948)
..-.|.+|.+- ..-+.|.|-=||+.|-
T Consensus 13 ~k~iCpkC~a~--------~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGAT--------NPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCE--------ECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCc--------CCCCceecCCCCCccc
Confidence 34669999886 3346899999998853
Done!