BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002240
(948 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN=PAXIP1 PE=2 SV=1
Length = 984
Score = 116 bits (290), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 5/201 (2%)
Query: 724 VLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTH 783
VLF+ + ++Q K L LG S TH + RT L AI+ K +VT
Sbjct: 784 VLFTG-FEPVQVQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTP 842
Query: 784 LWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPS 843
WLE + + +DE++YLLRD + E F FS+ SL RA PL K + ITP I PS
Sbjct: 843 EWLEECFKCQKFVDEQNYLLRDAEAEVLFSFSLEESLRRAHASPLFKAKYFYITPGICPS 902
Query: 844 KETISSLIKSVHGQAVERLG--RSAL--KDDKLPDDLLILSCEEDYEICEPFLEKGAAVY 899
T+ ++++ G+ + R R + K +K +++++SCE D +C + +G V+
Sbjct: 903 LSTMKAIVECAGGKVLSRQPSFRKLMEHKQNKSLSEIVLISCENDLHLCREYFARGIDVH 962
Query: 900 SSELLLNGMVTQKLEYERHRL 920
++E +L G++TQ L+YE ++
Sbjct: 963 NAEFVLTGVLTQTLDYESYKF 983
>sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2
Length = 1069
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 4/190 (2%)
Query: 735 IKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794
++Q K L LG S TH + RT L AI+ K +VT WLE + +
Sbjct: 879 VQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQK 938
Query: 795 HIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSV 854
IDE++Y+LRD + E F FS+ SL RA PL K + ITP I PS T+ ++++
Sbjct: 939 FIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECA 998
Query: 855 HGQAVERLG--RSAL--KDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVT 910
G+ + + R + K + +++++SCE D +C + +G V+++E +L G++T
Sbjct: 999 GGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLT 1058
Query: 911 QKLEYERHRL 920
Q L+YE ++
Sbjct: 1059 QTLDYESYKF 1068
>sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus GN=Paxip1 PE=1 SV=1
Length = 1056
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 102/190 (53%), Gaps = 4/190 (2%)
Query: 735 IKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794
++Q K L LG TH + RT L AI+ K +VT WLE + +
Sbjct: 866 VQQYIKKLYILGGEVAECTKKCTHLIASKVTRTVKFLTAISVVKHIVTPDWLEECFKRQT 925
Query: 795 HIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSV 854
IDE++Y+LRD + E F FS+ SL RA PL K + ITP I PS T+ ++++
Sbjct: 926 FIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKTKYFYITPGICPSLATMKAIVECA 985
Query: 855 HGQAVERLG--RSAL--KDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVT 910
G+ + + R + K +K +++++SCE D +C + +G V+++E +L G++T
Sbjct: 986 GGKVLAKQPSFRKLMEHKQNKSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLT 1045
Query: 911 QKLEYERHRL 920
Q L+YE ++
Sbjct: 1046 QTLDYESYKF 1055
>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis GN=paxip1 PE=1 SV=1
Length = 1256
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 107/202 (52%), Gaps = 5/202 (2%)
Query: 723 QVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVT 782
V+F+ D ++Q K L LG + TH V + RT L AI+ K +VT
Sbjct: 1055 HVIFTG-FDPLQVQQYIKKLYILGGEVADTAQKCTHLVANKVTRTVKFLTAISVAKHIVT 1113
Query: 783 HLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKP 842
WL+ + + +E++Y+LRD + E F FS+ SL +A +PL K + ITP I P
Sbjct: 1114 PEWLDESFKSQKFAEEQNYILRDAEAEVLFCFSLEESLKKAHVNPLFKGKYFYITPGICP 1173
Query: 843 SKETISSLIKSVHGQAVERLG--RSAL--KDDKLPDDLLILSCEEDYEICEPFLEKGAAV 898
S T+ ++++ G+ + + R + K +K +++++SCE D +C + V
Sbjct: 1174 SLSTMKAIVECAGGKILTKQPSFRKIMEHKQNKRLAEIILISCENDLHLCREYFAGSVDV 1233
Query: 899 YSSELLLNGMVTQKLEYERHRL 920
+++E +L G++TQ L+YE ++
Sbjct: 1234 HNAEFVLTGVLTQALDYESYKF 1255
>sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1
PE=3 SV=1
Length = 2042
Score = 100 bits (248), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 10/207 (4%)
Query: 710 LKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRN 769
L+ + ++ + +VLF+ +D + ++ +L LG S SS+ +A+H VTD RT
Sbjct: 1834 LRRTKPAQESTAPRVLFTGVVD---ARGERAVLA-LGGSLASSVAEASHLVTDRIRRTVK 1889
Query: 770 MLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLL 829
L A+ G P+++ WL + + + Y++ D ++EK FGFS+ +L+RAR+ LL
Sbjct: 1890 FLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVTDPEQEKNFGFSLREALSRARERKLL 1949
Query: 830 KDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICE 889
+ + +TP ++P + +I G + + RS K + ++++C +D+ C
Sbjct: 1950 EGYEIHVTPGVQPPPPQMGEIISCCGGTVLPSMPRS-YKPQR-----VVITCSQDFPRCS 2003
Query: 890 PFLEKGAAVYSSELLLNGMVTQKLEYE 916
G V S E LL G++ Q+ + E
Sbjct: 2004 VPFRLGLPVLSPEFLLTGVLKQEAKPE 2030
>sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 OS=Rattus norvegicus
GN=Mdc1 PE=2 SV=2
Length = 1279
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 10/203 (4%)
Query: 714 RKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEA 773
+ ++ A+ +VLF+ +D + ++ +L LG S SS+ +A+H VTD RT L A
Sbjct: 1078 KPNQEAAAPKVLFTGVVDS---RGERAVL-ALGGSLASSVNEASHLVTDRIRRTVKFLCA 1133
Query: 774 IASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQR 833
+ G P+++ WL + + + YL+ D ++EK F FS+ SL+RAR+ LL+D
Sbjct: 1134 VGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLSRARERRLLEDYE 1193
Query: 834 VLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLE 893
+ +TP ++P + +I G + + S KL ++++C ED C
Sbjct: 1194 IHVTPGVQPPPPQMGEIISCCGGTVLPSMPHSY----KL--HRVVITCTEDLPRCAIASR 1247
Query: 894 KGAAVYSSELLLNGMVTQKLEYE 916
G + S E LL G++ Q+ E
Sbjct: 1248 LGLPLLSPEFLLTGVLKQEATPE 1270
>sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1
PE=1 SV=3
Length = 2089
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 13/211 (6%)
Query: 709 PLKDLRKRR---DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFV 765
P + LR+ + + + +VLF+ +D + ++ +L LG S S +A+H VTD
Sbjct: 1877 PSRSLRRTKLNQESTAPKVLFTGVVD---ARGERAVLA-LGGSLAGSAAEASHLVTDRIR 1932
Query: 766 RTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARK 825
RT L A+ G P+++ WL + + + Y++ D ++EK FGFS+ +L+RAR+
Sbjct: 1933 RTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARE 1992
Query: 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY 885
LL+ + +TP ++P + +I G + + RS K + ++++C +D+
Sbjct: 1993 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRS-YKPQR-----VVITCPQDF 2046
Query: 886 EICEPFLEKGAAVYSSELLLNGMVTQKLEYE 916
C L G + S E LL G++ Q+ + E
Sbjct: 2047 PHCSIPLRVGLPLLSPEFLLTGVLKQEAKPE 2077
>sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1
PE=3 SV=1
Length = 2173
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 108/211 (51%), Gaps = 13/211 (6%)
Query: 709 PLKDLRKRR---DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFV 765
P + LR+ + + + +VLF+ +D Q ++ + LG S S +A+H VTD
Sbjct: 1961 PNRSLRRTKLNQESTAPKVLFTGVVD----AQGERAVLALGGSLAGSAAEASHLVTDRIR 2016
Query: 766 RTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARK 825
RT L A+ G P+++ WL + + + Y++ D ++EK FGFS+ +L+RAR+
Sbjct: 2017 RTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVTDPEQEKNFGFSLQDALSRARE 2076
Query: 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY 885
LL+ + +TP ++P + +I G + + RS K + ++++C +D+
Sbjct: 2077 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRS-YKPQR-----VVITCPQDF 2130
Query: 886 EICEPFLEKGAAVYSSELLLNGMVTQKLEYE 916
C L G + S E LL G++ Q+ + E
Sbjct: 2131 PRCSVPLRVGLPLLSPEFLLTGVLKQEAKPE 2161
>sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes
GN=MDC1 PE=3 SV=1
Length = 2171
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 13/211 (6%)
Query: 709 PLKDLRKRR---DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFV 765
P + LR+ + + + +VLF+ +D + ++ +L LG S S +A+H VTD
Sbjct: 1959 PSRSLRRTKLNQESTAPKVLFTGVVD---ARGERAVLA-LGGSLAGSAAEASHLVTDRIR 2014
Query: 766 RTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARK 825
RT L A+ G P+++ WL + + + Y++ D ++EK FGFS+ +L+RAR+
Sbjct: 2015 RTVKFLCALGRGIPILSLDWLHQSHKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARE 2074
Query: 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY 885
LL+ + +TP ++P + +I G + + RS K + ++++C +D+
Sbjct: 2075 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRS-YKPQR-----VVITCPQDF 2128
Query: 886 EICEPFLEKGAAVYSSELLLNGMVTQKLEYE 916
C L G + S E LL G++ Q+ + E
Sbjct: 2129 PHCSIPLRVGLPLLSPEFLLTGVLKQEAKPE 2159
>sp|Q5PSV9|MDC1_MOUSE Mediator of DNA damage checkpoint protein 1 OS=Mus musculus GN=Mdc1
PE=1 SV=1
Length = 1707
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 14/210 (6%)
Query: 711 KDLRKRRDMA----SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVR 766
K R RR + +VLF+ +D + ++ +L LG S SS+ +A+H VTD R
Sbjct: 1496 KPTRSRRTKPNQETAPKVLFTGVMDS---RGERAVL-ALGGSLASSVNEASHLVTDRIRR 1551
Query: 767 TRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKH 826
T L A+ G P+++ WL + + + YL+ D ++EK F FS+ SL RAR+
Sbjct: 1552 TVKFLCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLCRARER 1611
Query: 827 PLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYE 886
LL+D + +TP ++P + +I G + + S KL +I++C ED
Sbjct: 1612 RLLEDYEIHVTPGVQPPPPQMGEIISCCGGTFLPSMPHSY----KL--HRVIITCTEDLP 1665
Query: 887 ICEPFLEKGAAVYSSELLLNGMVTQKLEYE 916
C G + S E LL G++ Q+ E
Sbjct: 1666 RCAIPSRLGLPLLSPEFLLTGVLKQEATPE 1695
>sp|Q10337|BRC1_SCHPO BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=brc1 PE=1 SV=1
Length = 878
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 15/165 (9%)
Query: 742 LDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESY 801
L +L S S+ + TH + +RT L +I G VVT W+ S + +DEE Y
Sbjct: 683 LKKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPY 742
Query: 802 LLRDTKKEKEFGFSMPASLARARKH--PLLKDQRVLITP-NIKPSK-ETISSLIKSVHGQ 857
LL D +KE E G ++ ++L RAR LL+D V +T + P + S++KS G
Sbjct: 743 LLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGV 802
Query: 858 AV------ERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGA 896
+RL R L+D ++++++C ED I FL+ +
Sbjct: 803 CSTLNVYNKRLARH-LED----GNVVLITCNEDSHIWTNFLDNAS 842
>sp|O14079|MDB1_SCHPO Uncharacterized protein mdb1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mdb1 PE=1 SV=2
Length = 624
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 12/196 (6%)
Query: 733 DIIKQQKKILDRLGASEVSSITDATHFV---TDIFVRTRNMLEAIASGKPVVTHLWLESI 789
++ K K + R G S+TD T FV + RT L A + G P+V+ +L
Sbjct: 395 NLTKPMKSFIRRNGLRVQESVTDETDFVILGSPPLRRTHKFLLATSLGIPLVSSQYLTDC 454
Query: 790 AQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSK--ETI 847
+ +D SY +D + E ++GF L + +R+ IT I+ S ++I
Sbjct: 455 IKSGKVLDFRSYKYKDEEAEAKWGF----RLDDIHRRTCFNGKRLYITKAIRDSMVGDSI 510
Query: 848 SSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNG 907
L + E +G +K D +IL+ ++ + G VY EL+
Sbjct: 511 HGLYSILETSGAEIVGDIKRAQEK---DTIILAQPDNDQEGRNMSATGLNVYKIELVALS 567
Query: 908 MVTQKLEYERHRLFVD 923
++ +++++ + D
Sbjct: 568 ILRDRIDFDEFLIDYD 583
>sp|Q8FQP1|EX7L_COREF Exodeoxyribonuclease 7 large subunit OS=Corynebacterium efficiens
(strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC
100395) GN=xseA PE=3 SV=2
Length = 413
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 752 SITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLES-IAQVKIHIDEE-SYL-LRDTKK 808
S D V D+ + +N +E + HLW+E +AQ+ + + + SYL LRD ++
Sbjct: 6 STPDTPWPVRDVNNQVKNWIERLG-------HLWVEGQLAQINVKPNWKLSYLTLRDVEQ 58
Query: 809 EKEFGFSMPASLARARKHPLLKDQRVLI 836
E + P + R R PL RV++
Sbjct: 59 EVSVQLTCPTEIIRNRPTPLKDGDRVIV 86
>sp|E7FCN8|INTU_DANRE Protein inturned OS=Danio rerio GN=intu PE=3 SV=1
Length = 915
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 23/121 (19%)
Query: 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASG 777
D+ I + S LD + + +++I+ + SE S+ A V IF+ +MLE + G
Sbjct: 292 DVPHIAMFLSLRLDSETQQDEQEIVYQYPQSEASAQLKA---VRGIFLTLCDMLENVTGG 348
Query: 778 KPVVTHLWLESIAQVKIHID---EESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRV 834
+ + + LWL+ Q +H+ EES LL ++PAS + PLL Q V
Sbjct: 349 QIISSSLWLQ---QQLVHVGYWKEESNLLV---------IAVPAS-----RVPLLYLQTV 391
Query: 835 L 835
+
Sbjct: 392 I 392
>sp|A8Z5T3|RPOB_SULMW DNA-directed RNA polymerase subunit beta OS=Sulcia muelleri (strain
GWSS) GN=rpoB PE=3 SV=1
Length = 1328
Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 769 NMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTK-KEKEFGFSMPASLARARKHP 827
N +AI + VV W SI HIDE S +RDTK +EF F +P + K
Sbjct: 785 NFEDAIVISEKVVREDWFTSI-----HIDEYSLEVRDTKLGMEEFTFDIP-NFNEENKKK 838
Query: 828 LLKDQRVLITPNIKPSKETIS--------------SLIKSVHGQAVERLGRSALKDD 870
L K + I +KP I + +K++ G+ V + ++LK D
Sbjct: 839 LDKYGIIKIGSEVKPGDVLIGRITPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKAD 895
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,912,135
Number of Sequences: 539616
Number of extensions: 14783786
Number of successful extensions: 34258
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 33973
Number of HSP's gapped (non-prelim): 455
length of query: 948
length of database: 191,569,459
effective HSP length: 127
effective length of query: 821
effective length of database: 123,038,227
effective search space: 101014384367
effective search space used: 101014384367
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)