Query 002240
Match_columns 948
No_of_seqs 197 out of 734
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 19:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2043 Signaling protein SWIF 100.0 9.7E-35 2.1E-39 347.3 26.6 266 659-941 611-884 (896)
2 KOG4362 Transcriptional regula 99.5 8.9E-14 1.9E-18 162.9 12.4 186 721-913 478-680 (684)
3 KOG3548 DNA damage checkpoint 99.4 1E-12 2.2E-17 155.7 11.6 199 717-922 924-1173(1176)
4 PF00533 BRCT: BRCA1 C Terminu 99.1 3.3E-10 7.2E-15 96.9 9.0 72 718-790 5-78 (78)
5 cd00027 BRCT Breast Cancer Sup 99.0 7.7E-10 1.7E-14 90.5 7.8 71 721-791 1-72 (72)
6 KOG3524 Predicted guanine nucl 99.0 1.8E-10 3.8E-15 134.3 4.1 185 710-923 110-295 (850)
7 PF12738 PTCB-BRCT: twin BRCT 98.9 7.9E-10 1.7E-14 93.6 4.4 62 722-785 1-63 (63)
8 smart00292 BRCT breast cancer 98.9 3.8E-09 8.2E-14 88.4 8.3 74 719-793 3-80 (80)
9 KOG1929 Nucleotide excision re 98.9 1.2E-08 2.6E-13 123.1 13.0 184 714-922 5-190 (811)
10 PF00533 BRCT: BRCA1 C Terminu 98.5 5.8E-07 1.3E-11 77.0 8.1 74 826-908 3-78 (78)
11 KOG3226 DNA repair protein [Re 98.3 7.1E-07 1.5E-11 99.1 5.7 86 719-806 318-404 (508)
12 smart00292 BRCT breast cancer 98.2 5E-06 1.1E-10 69.5 8.1 76 827-910 1-79 (80)
13 cd00027 BRCT Breast Cancer Sup 98.1 1.9E-05 4.1E-10 64.5 8.3 69 831-908 1-71 (72)
14 PLN03122 Poly [ADP-ribose] pol 98.0 1.8E-05 3.8E-10 96.9 8.6 87 717-804 188-278 (815)
15 PLN03123 poly [ADP-ribose] pol 97.7 6.7E-05 1.4E-09 93.6 8.5 89 715-804 390-481 (981)
16 KOG1929 Nucleotide excision re 97.6 0.00039 8.5E-09 85.2 12.3 149 709-859 94-270 (811)
17 KOG0966 ATP-dependent DNA liga 96.8 0.022 4.8E-07 69.5 15.6 194 718-915 633-876 (881)
18 PF12738 PTCB-BRCT: twin BRCT 96.7 0.0024 5.2E-08 54.2 4.7 63 832-903 1-63 (63)
19 PLN03122 Poly [ADP-ribose] pol 96.4 0.0095 2.1E-07 73.7 9.3 87 825-921 186-278 (815)
20 KOG0966 ATP-dependent DNA liga 95.9 0.016 3.5E-07 70.6 7.6 91 826-923 631-724 (881)
21 PRK06195 DNA polymerase III su 95.5 0.032 7E-07 61.8 7.5 73 718-790 220-306 (309)
22 PRK07956 ligA NAD-dependent DN 95.4 0.04 8.7E-07 67.2 8.3 73 719-792 591-664 (665)
23 PRK06063 DNA polymerase III su 95.3 0.047 1E-06 60.9 7.7 71 719-790 233-305 (313)
24 PRK14351 ligA NAD-dependent DN 95.2 0.057 1.2E-06 66.2 8.6 75 718-792 609-684 (689)
25 PRK06063 DNA polymerase III su 95.2 0.056 1.2E-06 60.3 7.9 74 826-908 230-305 (313)
26 KOG3226 DNA repair protein [Re 95.2 0.031 6.6E-07 63.4 5.7 95 826-929 315-410 (508)
27 KOG0323 TFIIF-interacting CTD 94.8 0.011 2.5E-07 71.1 1.5 95 711-806 434-533 (635)
28 PLN03123 poly [ADP-ribose] pol 94.8 0.066 1.4E-06 67.8 8.0 88 824-921 389-481 (981)
29 PRK14350 ligA NAD-dependent DN 94.7 0.065 1.4E-06 65.5 7.5 71 719-790 594-665 (669)
30 KOG2481 Protein required for n 94.3 0.063 1.4E-06 63.1 5.8 109 826-943 325-436 (570)
31 TIGR00575 dnlj DNA ligase, NAD 94.3 0.073 1.6E-06 64.9 6.6 67 718-785 584-651 (652)
32 KOG2481 Protein required for n 93.8 0.053 1.1E-06 63.7 3.8 79 718-804 327-416 (570)
33 COG0272 Lig NAD-dependent DNA 93.6 0.21 4.5E-06 60.8 8.3 72 717-789 593-665 (667)
34 PRK06195 DNA polymerase III su 93.3 0.58 1.3E-05 52.0 10.8 156 738-908 130-306 (309)
35 PRK14350 ligA NAD-dependent DN 93.1 0.27 5.8E-06 60.4 8.4 71 827-906 592-663 (669)
36 COG5163 NOP7 Protein required 92.6 0.15 3.3E-06 58.5 4.9 83 826-920 348-438 (591)
37 PRK07956 ligA NAD-dependent DN 91.6 0.52 1.1E-05 57.9 8.4 72 828-908 590-662 (665)
38 COG5163 NOP7 Protein required 91.4 0.17 3.8E-06 58.0 3.8 78 719-804 351-440 (591)
39 COG0272 Lig NAD-dependent DNA 91.4 0.59 1.3E-05 57.1 8.4 72 827-907 593-665 (667)
40 PRK14351 ligA NAD-dependent DN 91.4 0.63 1.4E-05 57.4 8.7 74 827-909 608-683 (689)
41 KOG3548 DNA damage checkpoint 88.6 0.55 1.2E-05 58.7 5.1 98 824-923 921-1038(1176)
42 TIGR00575 dnlj DNA ligase, NAD 87.7 1.1 2.3E-05 55.1 6.9 68 827-903 583-651 (652)
43 COG5275 BRCT domain type II [G 86.2 3.2 7E-05 44.9 8.5 72 718-789 156-228 (276)
44 KOG3524 Predicted guanine nucl 83.5 0.61 1.3E-05 56.9 2.0 88 717-806 209-296 (850)
45 COG5275 BRCT domain type II [G 59.3 28 0.0006 38.1 7.0 76 826-909 154-230 (276)
46 KOG2093 Translesion DNA polyme 55.2 20 0.00044 45.5 5.9 128 710-844 39-177 (1016)
47 PRK05601 DNA polymerase III su 49.0 37 0.00081 39.7 6.4 72 719-791 295-368 (377)
48 PRK05601 DNA polymerase III su 33.7 96 0.0021 36.4 6.6 74 826-909 292-368 (377)
49 KOG2043 Signaling protein SWIF 29.1 67 0.0015 41.5 4.8 120 60-199 150-271 (896)
50 cd03821 GT1_Bme6_like This fam 28.8 53 0.0011 34.4 3.3 63 721-783 234-311 (375)
51 TIGR00936 ahcY adenosylhomocys 24.3 2.3E+02 0.0049 33.7 7.6 61 824-899 25-85 (406)
52 PF15101 DUF4557: Domain of un 23.4 1.6E+02 0.0034 32.2 5.5 78 829-920 1-87 (212)
53 COG4446 Uncharacterized protei 21.3 71 0.0015 32.3 2.4 27 238-264 107-133 (141)
54 PF05991 NYN_YacP: YacP-like N 20.3 3.2E+02 0.0069 28.2 7.0 67 828-911 64-130 (166)
No 1
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=9.7e-35 Score=347.35 Aligned_cols=266 Identities=35% Similarity=0.499 Sum_probs=229.8
Q ss_pred CCcccccccCCCCcccCCcccccccccccccchhhHHHHHhhcCCCCCCCccchhhhhccCCCeEEEEcCCCCHHHHHHH
Q 002240 659 PANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDEDIIKQQ 738 (948)
Q Consensus 659 ~~~~~~~~~~~s~~~~~~~~~k~~c~r~L~rs~~~kEL~~L~~~~~ep~~~~K~sr~rr~ms~vrV~FSGf~dee~~k~L 738 (948)
+.....+-..+.|+|+..+|....| +-..+..+|+.....+..++.. + .+.++|+++.+... +
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~sr---~~~t~~~~e~~s~~~~~~e~~~------~-----r~~~lfs~~~~~~~---~ 673 (896)
T KOG2043|consen 611 SSSQGESCPDVPTICVRTNYSGASR---LASTPAASELRSSSANLNELAS------K-----RIEVLFSDKNDGKN---Y 673 (896)
T ss_pred ccccCCCCCCcccccccccccccch---hccccchhhhhhhhhccchhhc------c-----ceeeeeeeccCchh---h
Confidence 3344457788899999999766555 5577788888877666666664 1 19999999987653 5
Q ss_pred HHHHHHcCCEEeccCCCceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCCCCCCcccCCchhhhhcCCChhH
Q 002240 739 KKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPA 818 (948)
Q Consensus 739 KKiIk~LGGsVvddisd~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~VDEe~YeL~D~e~Eke~gfsL~~ 818 (948)
+..++.|||.++.++.++||+|+++++||.|||+||++|+|||+++||.+|++.|.|+||++|+|.|.+.|++|||+|..
T Consensus 674 k~~~k~lg~s~~ss~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~yil~D~ekEk~~gf~l~s 753 (896)
T KOG2043|consen 674 KLAKKFLGGSVASSDSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPYILHDEEKEKEFGFRLKS 753 (896)
T ss_pred hhHHhhccceeecccccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCccccccCHHHHhccCcchhh
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccC----CCCCCceEEEecCCchhccHHHhhc
Q 002240 819 SLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKD----DKLPDDLLILSCEEDYEICEPFLEK 894 (948)
Q Consensus 819 SLarArk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD----~~~pd~lIIISceeD~~~~~~llk~ 894 (948)
+|.||+..++|.|+.||+++.+.|+...+.+||+++||.|+...+...... ...+.++++|+|++|...|..++..
T Consensus 754 sl~RAr~~plL~g~~v~vtp~v~p~~~~v~eiie~~ggnvv~~~p~~~~~~k~~l~~~~~~~v~itc~~D~~~~~~fl~~ 833 (896)
T KOG2043|consen 754 SLLRARADPLLEGINVHVTPSVTPSPKTVVEIIEISGGNVVSDSPKGVYTKKIVLSAHDLDVVGITCSEDRTFCDNFLDN 833 (896)
T ss_pred HHHHhhcchhhcCceEEeccccccCcchhHHHHhhcCcceecccCccceecccccccCcccceeeccccccccccccccc
Confidence 999999999999999999999999999999999999999998877532111 1123468999999999999999999
Q ss_pred CCe---EechhHHHHH-HhcCccCcccCccccccccccccccceeccCCce
Q 002240 895 GAA---VYSSELLLNG-MVTQKLEYERHRLFVDNVKRTRSTIWLRKDGHKF 941 (948)
Q Consensus 895 Gi~---VVSsEWILdS-IL~QkLE~E~y~Lf~d~v~~trs~~w~~~~~~~f 941 (948)
+.+ +|+++++|.. +..|..++..|+++-+++..+..+.|.++..-+|
T Consensus 834 ~~~~~~i~~~~~~l~~~~v~q~~~~~~~ri~l~~v~~~~~~~~~~~~~s~~ 884 (896)
T KOG2043|consen 834 GLEQENIFSPEYVLKGGLVQQQEPSPALRIPLDNVTTTKDTEQNRCVESIF 884 (896)
T ss_pred ccccccccchHhhhhccceeecccccceeccccccccccccccccccccch
Confidence 998 9999999998 4456679999999999999999999999765443
No 2
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=99.50 E-value=8.9e-14 Score=162.87 Aligned_cols=186 Identities=18% Similarity=0.231 Sum_probs=126.6
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeC-----CCCChHHHHHHHhCCCCeecHHHHHHHHHhCC
Q 002240 721 SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTD-----IFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794 (948)
Q Consensus 721 ~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~-----k~~RT~KfL~AIA~GipIVSp~WLedClkaGk 794 (948)
..+.+.+|.++++.. .+.++... ++...+. .+||+||. .+.||+|||.+|+.|+||+++.|+.+|++.++
T Consensus 478 k~~~~~s~l~p~ek~-~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~ 553 (684)
T KOG4362|consen 478 KLVLLVSGLTPSEKQ-LVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRK 553 (684)
T ss_pred ceeeeeccCCcchHH-HHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcC
Confidence 467778999988753 34433333 4444454 79999986 38999999999999999999999999999999
Q ss_pred CCCCCCcccCC-chhhhhcCCChhHHhhhcccCCCCCCceEEEeCCC-CCCHHHHHHHHHhCCcEEEeccCcccccCCCC
Q 002240 795 HIDEESYLLRD-TKKEKEFGFSMPASLARARKHPLLKDQRVLITPNI-KPSKETISSLIKSVHGQAVERLGRSALKDDKL 872 (948)
Q Consensus 795 ~VDEe~YeL~D-~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~~v-kPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~ 872 (948)
|++|++|+|.- ...-. -+.....-.+..++.+||.|..||+.+.+ .++.+.|..||.++||.++...+.. ..+..
T Consensus 554 ~~~eepfEl~~d~~~~~-~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~-~~~~k- 630 (684)
T KOG4362|consen 554 WVSEEPFELQIDVPGAR-EGPKEKRLRAESYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVA-YSDKK- 630 (684)
T ss_pred CCCCCCeeEeecccCcc-cCcccccccccccCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCcc-ccccc-
Confidence 99999999873 21111 11111211222345789999999987654 5779999999999999999875433 11111
Q ss_pred CCceEEEecC--CchhccH------H-HhhcCCeEechhHHHHHHhcCcc
Q 002240 873 PDDLLILSCE--EDYEICE------P-FLEKGAAVYSSELLLNGMVTQKL 913 (948)
Q Consensus 873 pd~lIIISce--eD~~~~~------~-llk~Gi~VVSsEWILdSIL~QkL 913 (948)
...+.+++-. -+...|. . ....+++.++..||+++|.-|++
T Consensus 631 ~s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~~~~ 680 (684)
T KOG4362|consen 631 KSTIVVLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAGYQI 680 (684)
T ss_pred ccceeEeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhceee
Confidence 1122222210 1111111 1 13468999999999999997764
No 3
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=99.40 E-value=1e-12 Score=155.66 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=122.5
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC-------------------C--------CceEEEeCCCCChHH
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI-------------------T--------DATHFVTDIFVRTRN 769 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddi-------------------s--------d~THLVA~k~~RT~K 769 (948)
--|.++.|+||+....+. .....+...||.|.+.. . ..-.||+++..||.|
T Consensus 924 niFd~cvF~lTsa~~sd~--~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~K 1001 (1176)
T KOG3548|consen 924 NIFDGCVFMLTSANRSDS--ASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHK 1001 (1176)
T ss_pred chhcceeEEEeccccchh--hhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHH
Confidence 447789999999654432 23445555666654321 0 124689999999999
Q ss_pred HHHHHhCCCCeecHHHHHHHHHhCCCCCCCCcccCCchhhhhcCCChhHHhhhc-c---c-----------CCCCCCceE
Q 002240 770 MLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARA-R---K-----------HPLLKDQRV 834 (948)
Q Consensus 770 fL~AIA~GipIVSp~WLedClkaGk~VDEe~YeL~D~e~Eke~gfsL~~SLarA-r---k-----------~~LF~G~rF 834 (948)
||.|+|+|+|+|++.||.+|++++++||..+|+|.... .|.|...+..+ . . +..+.|+.|
T Consensus 1002 YLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGy-----S~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v 1076 (1176)
T KOG3548|consen 1002 YLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGY-----SIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLSAREV 1076 (1176)
T ss_pred HHHHHHcCCCcccHHHHHHHHhccccccchhhcccCcc-----ccccccccccCccccCchhhccceeeEeeccccceeE
Confidence 99999999999999999999999999999999998631 12221111111 0 0 122233333
Q ss_pred EEeCCCCCCHHHHHHHHHhCCcEEEeccCcccc-cCCCCCCceEEEecCCchhccHHHh-hcCCeEechhHHHHHHhcCc
Q 002240 835 LITPNIKPSKETISSLIKSVHGQAVERLGRSAL-KDDKLPDDLLILSCEEDYEICEPFL-EKGAAVYSSELLLNGMVTQK 912 (948)
Q Consensus 835 yIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~l-KD~~~pd~lIIISceeD~~~~~~ll-k~Gi~VVSsEWILdSIL~Qk 912 (948)
.+.+.-....+.+.++++++|.-++......++ .|-..-...+|+.|+.-......++ ..++++|++|||++||+.+.
T Consensus 1077 ~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~ 1156 (1176)
T KOG3548|consen 1077 TQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTLGAPVVSSEWVIQTIILGK 1156 (1176)
T ss_pred EEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHhCCCccChhHhheeeeccc
Confidence 333222223566678888777766654211111 1111111235556665554444444 45899999999999999775
Q ss_pred -------cCcccCcccc
Q 002240 913 -------LEYERHRLFV 922 (948)
Q Consensus 913 -------LE~E~y~Lf~ 922 (948)
.+|+.|+|.+
T Consensus 1157 ~i~~~~hpk~d~y~~h~ 1173 (1176)
T KOG3548|consen 1157 AIEPNAHPKFDPYRLHH 1173 (1176)
T ss_pred cCCcccCccccccchhc
Confidence 3566666543
No 4
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.11 E-value=3.3e-10 Score=96.93 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=64.6
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC-CChHHHHHHHhCCCCeecHHHHHHHH
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF-VRTRNMLEAIASGKPVVTHLWLESIA 790 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~-~RT~KfL~AIA~GipIVSp~WLedCl 790 (948)
-+.++.|+|+++...+ .+.++++|+.+||.+...+. .+||||++.. .++.|++.|++.|+|||+++||.+|+
T Consensus 5 ~F~g~~f~i~~~~~~~-~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 5 IFEGCTFCISGFDSDE-REELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTEEEEESSTSSSH-HHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCEEEEEccCCCCC-HHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 4789999998887554 56789999999999988887 7999999987 78999999999999999999999996
No 5
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.03 E-value=7.7e-10 Score=90.50 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=60.9
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHH
Q 002240 721 SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (948)
Q Consensus 721 ~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClk 791 (948)
++.|+|+|..+......+++++..+||.+...+. .+||||++......++..|+..|+|||+++||.+|++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 4689999987333356789999999999999998 8999999987666669999999999999999999974
No 6
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=99.01 E-value=1.8e-10 Score=134.30 Aligned_cols=185 Identities=8% Similarity=0.050 Sum_probs=138.6
Q ss_pred cchhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHH
Q 002240 710 LKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLES 788 (948)
Q Consensus 710 ~K~sr~rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLed 788 (948)
..++.|...|.++..||||+...+. .+..+++.|||.|..+.. ..||||+.... ..||-.|+.. .|++.|.||.+
T Consensus 110 ~srply~~~m~~vvlcfTg~rkk~e--~lv~lvh~mgg~irkd~nsktthli~n~s~-gek~~~a~t~-~~~~rp~wv~~ 185 (850)
T KOG3524|consen 110 AARPLYCELMKDVVMCFTGERKKKE--ELVDLVHYMGGSIRKDTNSKTTHLIANKVE-GEKQSIALVG-VPTMRPDWVTE 185 (850)
T ss_pred cCCcccchhhcCceeeeeccchhhH--HHHHHHHHhcceeEeeeccCceEEEeeccc-ceEEEEEeec-cceechHhhhh
Confidence 3455677789999999999986543 688999999999998876 89999999764 7888888877 99999999999
Q ss_pred HHHhCCCCCCCCcccCCchhhhhcCCChhHHhhhcccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCccccc
Q 002240 789 IAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALK 868 (948)
Q Consensus 789 ClkaGk~VDEe~YeL~D~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lK 868 (948)
||....++. .| +..+.+...| +.+.|.|..|++.++.......|...++..||+.....+.+
T Consensus 186 aw~~rn~~y--fd-a~~~~f~d~h------------rl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~~d~~c--- 247 (850)
T KOG3524|consen 186 AWKHRNDSY--FD-AMEPCFVDKH------------RLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAPSDTLC--- 247 (850)
T ss_pred hhcCcchhh--hh-hhccchhhhh------------ccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccCCCCCc---
Confidence 999887654 11 2222222222 34789999999999988888999999999999987643332
Q ss_pred CCCCCCceEEEecCCchhccHHHhhcCCeEechhHHHHHHhcCccCcccCccccc
Q 002240 869 DDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERHRLFVD 923 (948)
Q Consensus 869 D~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILdSIL~QkLE~E~y~Lf~d 923 (948)
.+|+..++......-.......++..||+|-+|.+|.-=++...|+.+
T Consensus 248 -------thvvv~e~~~~~~p~~~s~~~~~vk~ewfw~siq~g~~a~e~~yl~~~ 295 (850)
T KOG3524|consen 248 -------THVVVNEDNDEVEPLAVSSNQVHVKKEWFWVSIQRGCCAIEDNYLLPT 295 (850)
T ss_pred -------eeEeecCCccccccccccccceeecccceEEEEecchhccccceeccc
Confidence 466665543322222233456799999999999999765665555544
No 7
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.93 E-value=7.9e-10 Score=93.60 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=51.7
Q ss_pred eEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHH
Q 002240 722 IQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLW 785 (948)
Q Consensus 722 vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~W 785 (948)
++|+||||.+.+ ...+.+++..|||.+..++. .+||||+... .+.||-.|...|+|||+++|
T Consensus 1 ~~i~~sg~~~~~-~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~-~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKE-RSQLRKLIEALGGKYSKDLTKKTTHLICSSP-EGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTT-CCHHHHHHHCTT-EEESSSSTT-SEEEEES---HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHH-HHHHHHHHHHCCCEEeccccCCceEEEEeCC-CcHHHHHHHHCCCcEECCCC
Confidence 579999998776 56789999999999999997 7999999755 59999999999999999999
No 8
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.93 E-value=3.8e-09 Score=88.38 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=62.0
Q ss_pred CCCeEEEEcC-CCCHHHHHHHHHHHHHcCCEEeccCC--CceEEEeCCCCC-hHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 719 MASIQVLFSH-HLDEDIIKQQKKILDRLGASEVSSIT--DATHFVTDIFVR-TRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 719 ms~vrV~FSG-f~dee~~k~LKKiIk~LGGsVvddis--d~THLVA~k~~R-T~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
+.++.|+|+| +... ..+.+.+++..+||.+...+. .+||||+....- ..+++.|...++|||+++||.+|++.+
T Consensus 3 f~g~~~~~~g~~~~~-~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~~ 80 (80)
T smart00292 3 FKGKVFVITGKFDKN-ERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKAG 80 (80)
T ss_pred cCCeEEEEeCCCCCc-cHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHCc
Confidence 6789999999 5443 456789999999999999988 799999986433 333899999999999999999999864
No 9
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.87 E-value=1.2e-08 Score=123.14 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=142.3
Q ss_pred hhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHh
Q 002240 714 RKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (948)
Q Consensus 714 r~rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClka 792 (948)
.+.+.|.++.|+.|++.+. ..+.+.+.+..|||.+..++. .|||||++.+. +-||..|...+++||+.+|+...+..
T Consensus 5 ~~~~~~~~v~~~~t~i~p~-~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~-s~~~~~a~~~~~~~~~~~wi~~~~d~ 82 (811)
T KOG1929|consen 5 LYSKPMSGVTFSPTGINPI-KREELSKKFIKLGGIDFKDFTPSVTHLIVGSVT-SSKYAAAHRFDIKVLDSSWIDYIYDL 82 (811)
T ss_pred ccCcccCCceeccCcCCHH-HHHHHHHHHHhcCceeeeccCCcCceeeccccc-ccchhhhhcCCCceecchHHHHHHHH
Confidence 3456789999999999854 566788899999999998887 89999999886 77888888999999999999998887
Q ss_pred CCCCCCCCcccCCchhhhhcCCChhHHhhhcccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCC
Q 002240 793 KIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKL 872 (948)
Q Consensus 793 Gk~VDEe~YeL~D~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~ 872 (948)
... . ..=.+.+.-.. .+ ..+.|.|+.||+++...+.+..+..+|-..||+....+...+
T Consensus 83 ~~~-~-~e~~~~~~l~~-~~------------~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v------ 141 (811)
T KOG1929|consen 83 WLL-N-KEIRLLDPLRD-TM------------KCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDV------ 141 (811)
T ss_pred hhh-h-ccCccCccchh-hh------------cCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhh------
Confidence 765 2 22222222111 11 247899999999999988999999999999999887654321
Q ss_pred CCceEEEecCCchhccHHHhhcCCeEechhHHHHHHhcCc-cCcccCcccc
Q 002240 873 PDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQK-LEYERHRLFV 922 (948)
Q Consensus 873 pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILdSIL~Qk-LE~E~y~Lf~ 922 (948)
..+++...-....+..+++.+++||+.+|++++|.+-. ++.+.|++..
T Consensus 142 --~~~~~~~~~~~~kYe~al~wn~~v~~~~w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 142 --NSLKILPEVKTEKYEQALKWNIPVVSDDWLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred --heeeeccccchHHHHHHHhhCCccccHHHHhhhhccccccccccccccc
Confidence 23344333344667778899999999999999999764 4777777665
No 10
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.47 E-value=5.8e-07 Score=76.96 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=57.5
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCC--chhccHHHhhcCCeEechhH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE--DYEICEPFLEKGAAVYSSEL 903 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIIScee--D~~~~~~llk~Gi~VVSsEW 903 (948)
.++|+|+.|||.......++.|+.+|+..||++...... ...+||.... +...+......+++||+++|
T Consensus 3 ~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~---------~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~W 73 (78)
T PF00533_consen 3 PKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSK---------KTTHVIVGNPNKRTKKYKAAIANGIPIVSPDW 73 (78)
T ss_dssp TTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSST---------TSSEEEESSSHCCCHHHHHHHHTTSEEEETHH
T ss_pred CCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeeccc---------CcEEEEeCCCCCccHHHHHHHHCCCeEecHHH
Confidence 579999999997777777999999999999999765432 2245665544 44445556678999999999
Q ss_pred HHHHH
Q 002240 904 LLNGM 908 (948)
Q Consensus 904 ILdSI 908 (948)
|++||
T Consensus 74 i~~ci 78 (78)
T PF00533_consen 74 IEDCI 78 (78)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99997
No 11
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=98.30 E-value=7.1e-07 Score=99.08 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCCC
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHID 797 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~VD 797 (948)
|.++.|++|||...+. ..|....-.||+++.-+|. .||||||. |..|.||-.-.-.|--||+-+||++|..+.++||
T Consensus 318 L~GVV~VlSGfqNP~R-s~LRskAl~LGAkY~pDW~~gsThLICA-F~NTPKy~QV~g~Gg~IV~keWI~~Cy~~kk~lp 395 (508)
T KOG3226|consen 318 LEGVVFVLSGFQNPER-STLRSKALTLGAKYQPDWNAGSTHLICA-FPNTPKYRQVEGNGGTIVSKEWITECYAQKKLLP 395 (508)
T ss_pred hhceEEEEecccCchH-HHHHHHHHhhcccccCCcCCCceeEEEe-cCCCcchhhcccCCceEeeHHHHHHHHHHHhhcc
Confidence 7899999999987654 4577777799999999997 89999998 6679999999999999999999999999999999
Q ss_pred CCCcccCCc
Q 002240 798 EESYLLRDT 806 (948)
Q Consensus 798 Ee~YeL~D~ 806 (948)
.+.|.+...
T Consensus 396 ~rrYlm~~~ 404 (508)
T KOG3226|consen 396 IRRYLMHAG 404 (508)
T ss_pred HHHHHhcCC
Confidence 999988653
No 12
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.23 E-value=5e-06 Score=69.49 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=56.9
Q ss_pred CCCCCceEEEeC-CCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhc--cHHHhhcCCeEechhH
Q 002240 827 PLLKDQRVLITP-NIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEI--CEPFLEKGAAVYSSEL 903 (948)
Q Consensus 827 ~LF~G~rFyIT~-~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~--~~~llk~Gi~VVSsEW 903 (948)
++|+|+.||+.+ ...+.++.|.++|..+||+++...... ...+||....+... +......+++||+++|
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~--------~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~W 72 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSK--------TTTHVIVGSPEGGKLELLLAIALGIPIVTEDW 72 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCcc--------ceeEEEEcCCCCccHHHHHHHHcCCCCccHHH
Confidence 489999999998 556779999999999999998765320 23456654443322 3444567999999999
Q ss_pred HHHHHhc
Q 002240 904 LLNGMVT 910 (948)
Q Consensus 904 ILdSIL~ 910 (948)
|++||-.
T Consensus 73 i~~~~~~ 79 (80)
T smart00292 73 LLDCLKA 79 (80)
T ss_pred HHHHHHC
Confidence 9999863
No 13
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.08 E-value=1.9e-05 Score=64.54 Aligned_cols=69 Identities=13% Similarity=0.272 Sum_probs=53.6
Q ss_pred CceEEEeCCC-CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhc-cHHHhhcCCeEechhHHHHHH
Q 002240 831 DQRVLITPNI-KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEI-CEPFLEKGAAVYSSELLLNGM 908 (948)
Q Consensus 831 G~rFyIT~~v-kPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~-~~~llk~Gi~VVSsEWILdSI 908 (948)
|+.|||++.. .+.+..|+++|+.+||+++..... ...+||....+... .......+++||+++||++||
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~---------~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSK---------KTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccC---------CceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHh
Confidence 6789999987 788999999999999999876531 23566665544433 444557899999999999997
No 14
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.95 E-value=1.8e-05 Score=96.86 Aligned_cols=87 Identities=22% Similarity=0.307 Sum_probs=75.6
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCC--C--hHHHHHHHhCCCCeecHHHHHHHHHh
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFV--R--TRNMLEAIASGKPVVTHLWLESIAQV 792 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddisd~THLVA~k~~--R--T~KfL~AIA~GipIVSp~WLedClka 792 (948)
..+.+..|+|||.... ....++++|..+||.++.++..+||||+..-. + +-|+-.|...|+|||+.+||.+|++.
T Consensus 188 kpL~G~~fviTGtl~~-sr~elK~~Ie~~GGkvsssVs~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~i~~ 266 (815)
T PLN03122 188 KPFSGMMISLSGRLSR-THQYWKKDIEKHGGKVANSVEGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDSIEK 266 (815)
T ss_pred CCcCCcEEEEeCCCCC-CHHHHHHHHHHcCCEEccccccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHHHhc
Confidence 3478999999997654 34578999999999999999999999986522 3 37999999999999999999999999
Q ss_pred CCCCCCCCcccC
Q 002240 793 KIHIDEESYLLR 804 (948)
Q Consensus 793 Gk~VDEe~YeL~ 804 (948)
+..+++..|.+.
T Consensus 267 ~k~~~~~~y~l~ 278 (815)
T PLN03122 267 QEAQPLEAYDVV 278 (815)
T ss_pred CCcccchhhhhc
Confidence 999999999874
No 15
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.73 E-value=6.7e-05 Score=93.60 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=75.5
Q ss_pred hhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC--CCChHHHHHHHhCCCCeecHHHHHHHHH
Q 002240 715 KRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI--FVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (948)
Q Consensus 715 ~rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k--~~RT~KfL~AIA~GipIVSp~WLedClk 791 (948)
..+-+.+++|+++|-.... ..++++.|..+||++...+. .+||||+.. -.+..|+-.|...|+|||+.+||.+|..
T Consensus 390 ~~~~l~~~~i~i~G~~~~~-~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~ 468 (981)
T PLN03123 390 ESEFLGDLKVSIVGASKEK-VTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFK 468 (981)
T ss_pred cCCCcCCeEEEEecCCCCc-HHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHh
Confidence 3445789999999976543 35788999999999999987 799999875 3457889999999999999999999999
Q ss_pred hCCCCCCCCcccC
Q 002240 792 VKIHIDEESYLLR 804 (948)
Q Consensus 792 aGk~VDEe~YeL~ 804 (948)
.+..+++..|.+.
T Consensus 469 ~~~~~p~~~y~~~ 481 (981)
T PLN03123 469 KKKKLPFDKYKLE 481 (981)
T ss_pred ccccCcchhhhhc
Confidence 9988898888665
No 16
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.60 E-value=0.00039 Score=85.15 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=110.8
Q ss_pred ccchhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHH
Q 002240 709 PLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLE 787 (948)
Q Consensus 709 ~~K~sr~rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLe 787 (948)
++-+.-+...+.+++||+||+...+ +.+++.+|..+||.....+. .++|+++....-|.||-+|+...++||+.+|++
T Consensus 94 ~l~~~~~~p~~~~~~Vc~tgl~~~e-K~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~~w~~ 172 (811)
T KOG1929|consen 94 PLRDTMKCPGFFGLKVCLTGLSGDE-KSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPVVSDDWLF 172 (811)
T ss_pred cchhhhcCCcccceEEEecccchHH-HHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCccccHHHHh
Confidence 3444455567889999999998655 45788999999999988887 677777777666899999999999999999999
Q ss_pred HHHHhCCCCCCCCcccCCchhhhhcC---C------------Ch------hHHhhh-----c-ccCCCCCCceEEEeCCC
Q 002240 788 SIAQVKIHIDEESYLLRDTKKEKEFG---F------------SM------PASLAR-----A-RKHPLLKDQRVLITPNI 840 (948)
Q Consensus 788 dClkaGk~VDEe~YeL~D~e~Eke~g---f------------sL------~~SLar-----A-rk~~LF~G~rFyIT~~v 840 (948)
+|+..+..+++..|++... ++..-+ - .+ .....+ . ....+..++.++..+..
T Consensus 173 ~s~~~~~~~~~~~~e~~~~-~~~is~~~~~~~~~~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~~c~v~~s~~~ 251 (811)
T KOG1929|consen 173 DSIEKTAVLETKPYEGAPV-AEAISGPIGSTLPKEILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLDDCLVETSGTT 251 (811)
T ss_pred hhhcccccccccccccccc-cceeccCCccccccccccccchhhhccccchhcccccccchhhhhccccccceeeecCCc
Confidence 9999999999999998762 111000 0 00 000111 0 01235678888888877
Q ss_pred CCCHHHHHHHHHhCCcEEE
Q 002240 841 KPSKETISSLIKSVHGQAV 859 (948)
Q Consensus 841 kPskd~Lk~LIeaaGGkVV 859 (948)
.-.++-|.+++..+||.-+
T Consensus 252 ~~~~s~l~r~~~~g~~~~~ 270 (811)
T KOG1929|consen 252 SRNRSALSRLSNNGGSLRF 270 (811)
T ss_pred ccchhHhHHhhhcccceee
Confidence 7778889999999888644
No 17
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=96.83 E-value=0.022 Score=69.48 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=113.8
Q ss_pred cCCCeEEE-EcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEe--CCCCChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 718 DMASIQVL-FSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVT--DIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 718 ~ms~vrV~-FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA--~k~~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
.+.++.|| |+|....+.+..+.++|...||.|+.++. ..||.|+ +... |..-..|+..++-||.|+||.+|.+..
T Consensus 633 if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et-~~vk~~~~~~~cdVl~p~Wlldcc~~~ 711 (881)
T KOG0966|consen 633 IFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKET-TRVKAQAIKRSCDVLKPAWLLDCCKKQ 711 (881)
T ss_pred hhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccc-hHHHHHHHhccCceeeHHHHHHHHhhh
Confidence 45667666 58876555567789999999999999987 4888885 5443 666667888899999999999999988
Q ss_pred CCCCCCCccc-C--Cc---hhhhhc---C------CC---hhHHhhhcc-------------------c-CCCCCCce-E
Q 002240 794 IHIDEESYLL-R--DT---KKEKEF---G------FS---MPASLARAR-------------------K-HPLLKDQR-V 834 (948)
Q Consensus 794 k~VDEe~YeL-~--D~---e~Eke~---g------fs---L~~SLarAr-------------------k-~~LF~G~r-F 834 (948)
.+++-.++.+ . +. ..++++ | .. |..+++... + .-+|..++ |
T Consensus 712 ~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~S~ds~~~~~~~~~~~~e~r~~~~~~~~~~f 791 (881)
T KOG0966|consen 712 RLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGIKKSQDSLPPMGASEKDSLERRFSLFLSSLRMF 791 (881)
T ss_pred hccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhhhhcccccCchhhhhhhcHHHhhccccccceee
Confidence 8887666432 1 11 112222 1 22 222232211 1 11233333 4
Q ss_pred EEeCCCCCCHHH-HHHHHHhCCcEEEeccCcccccCCCCCCceEEE-ecC-CchhccHHHhh----cCCeEechhHHHHH
Q 002240 835 LITPNIKPSKET-ISSLIKSVHGQAVERLGRSALKDDKLPDDLLIL-SCE-EDYEICEPFLE----KGAAVYSSELLLNG 907 (948)
Q Consensus 835 yIT~~vkPskd~-Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIII-Sce-eD~~~~~~llk----~Gi~VVSsEWILdS 907 (948)
|.......+.+. +.--++.+||.++.....+.. ...+ -+++| .|- ++......... ..-.||.++||-+|
T Consensus 792 ~~~~~~~~se~~~~~l~~k~~g~~i~~~~~~~~~--~~~~-~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s 868 (881)
T KOG0966|consen 792 YVLRRKLSSEEVIIELKLKNFGGRITDAQSECNN--IGAK-YTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHS 868 (881)
T ss_pred ecccccccHHHHHHHHHHHHhcceeeeccchhhh--cccc-eeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHh
Confidence 444333333333 455677889999876543311 0111 12333 333 33322221111 11289999999999
Q ss_pred HhcCccCc
Q 002240 908 MVTQKLEY 915 (948)
Q Consensus 908 IL~QkLE~ 915 (948)
|-...+-+
T Consensus 869 ~~~~~~~~ 876 (881)
T KOG0966|consen 869 INENCLLP 876 (881)
T ss_pred hcccccCc
Confidence 98776633
No 18
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=96.69 E-value=0.0024 Score=54.18 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=47.9
Q ss_pred ceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhH
Q 002240 832 QRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSEL 903 (948)
Q Consensus 832 ~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEW 903 (948)
++|++++...+++..|..+|+..||.+...... ...++|+....-..+..+.+.|++||+++|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~---------~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTK---------KTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSST---------T-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccC---------CceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 368899888888999999999999999887632 235777766666777788889999999999
No 19
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=96.44 E-value=0.0095 Score=73.73 Aligned_cols=87 Identities=9% Similarity=0.123 Sum_probs=67.4
Q ss_pred cCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch-----hccHHHhhcCCeEe
Q 002240 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY-----EICEPFLEKGAAVY 899 (948)
Q Consensus 825 k~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~-----~~~~~llk~Gi~VV 899 (948)
..+.|.|++|.|++....++.+++.+|+.+||+|...... .+++|+...+. ..+..+...|++||
T Consensus 186 ~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssVs~----------~T~lIvt~~ev~k~gsSKlkkAk~lgIpIV 255 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSVEG----------VTCLVVSPAERERGGSSKIAEAMERGIPVV 255 (815)
T ss_pred cCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccccc----------ceEEEEcCccccccCccHHHHHHHcCCcCc
Confidence 4567999999999988778999999999999999887532 13444444331 34566777899999
Q ss_pred chhHHHHHHhcCc-cCcccCccc
Q 002240 900 SSELLLNGMVTQK-LEYERHRLF 921 (948)
Q Consensus 900 SsEWILdSIL~Qk-LE~E~y~Lf 921 (948)
+.+||++++-.++ +++..|.+.
T Consensus 256 sEd~L~d~i~~~k~~~~~~y~l~ 278 (815)
T PLN03122 256 REAWLIDSIEKQEAQPLEAYDVV 278 (815)
T ss_pred cHHHHHHHHhcCCcccchhhhhc
Confidence 9999999999875 477777774
No 20
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=95.95 E-value=0.016 Score=70.59 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=71.8
Q ss_pred CCCCCCceEEEeCCCC--CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhH
Q 002240 826 HPLLKDQRVLITPNIK--PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSEL 903 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vk--Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEW 903 (948)
..+|.|..||+..... +.+..|+++|...||.++.....+ ....++++..+....+..++.++..|+.++|
T Consensus 631 s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~-------~~~ci~~a~~et~~vk~~~~~~~cdVl~p~W 703 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPS-------DTLCIATAGKETTRVKAQAIKRSCDVLKPAW 703 (881)
T ss_pred hhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCC-------CcceEEeccccchHHHHHHHhccCceeeHHH
Confidence 5799999999987654 447899999999999999875432 0123444555566677777888999999999
Q ss_pred HHHHHhcCc-cCcccCccccc
Q 002240 904 LLNGMVTQK-LEYERHRLFVD 923 (948)
Q Consensus 904 ILdSIL~Qk-LE~E~y~Lf~d 923 (948)
|++|+..|+ +.+.++.+|+.
T Consensus 704 lldcc~~~~l~p~~P~~~fh~ 724 (881)
T KOG0966|consen 704 LLDCCKKQRLLPWLPRDLFHA 724 (881)
T ss_pred HHHHHhhhhccccccHHHHhh
Confidence 999999999 58888888865
No 21
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=95.54 E-value=0.032 Score=61.78 Aligned_cols=73 Identities=19% Similarity=0.159 Sum_probs=57.8
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC--------CChHHHHHHHhC-----CCCeecH
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF--------VRTRNMLEAIAS-----GKPVVTH 783 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~--------~RT~KfL~AIA~-----GipIVSp 783 (948)
.+.+.+|||||-......++++++++.+||.|.++++ ++|+||++.. .-+-|+-.|... |++|++.
T Consensus 220 ~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~E 299 (309)
T PRK06195 220 AFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLNE 299 (309)
T ss_pred cccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEecH
Confidence 3779999999977443456788999999999999998 7889999842 236799999887 9999998
Q ss_pred HHHHHHH
Q 002240 784 LWLESIA 790 (948)
Q Consensus 784 ~WLedCl 790 (948)
+=+.+-+
T Consensus 300 ~~f~~l~ 306 (309)
T PRK06195 300 EEFLQKC 306 (309)
T ss_pred HHHHHHH
Confidence 6555443
No 22
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=95.40 E-value=0.04 Score=67.23 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHh
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClka 792 (948)
+.+..|||||....-....++.++..+||.|+++++ +++.||++.- -+-|+-.|...|++|++.+-+.+.+.+
T Consensus 591 ~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~-~gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 591 LAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEA-AGSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCC-CChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 789999999987542345788999999999999998 6888888864 357999999999999999998887654
No 23
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=95.27 E-value=0.047 Score=60.90 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC-CCChHHHHHHHhCCCCeecHHHHHHHH
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI-FVRTRNMLEAIASGKPVVTHLWLESIA 790 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k-~~RT~KfL~AIA~GipIVSp~WLedCl 790 (948)
..+.+|+|||-... ....+++++..+||.|.++++ +++.||++. ...+-|.-.|-..|+|||+.+=+.+-+
T Consensus 233 ~~g~~~v~TG~l~~-~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 233 VQGMRVALSAEVSR-THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred cCCCEEEEecCCCC-CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 46899999997753 345788999999999999998 789999986 333579999999999999998776655
No 24
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=95.17 E-value=0.057 Score=66.21 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=62.4
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHh
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClka 792 (948)
.+.+..|||||....-....++++|+.+||.|.++++ +++.||++.-.-.-|+-.|-..|++|++.+.+.+-++.
T Consensus 609 ~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 609 ALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 3789999999987542345788999999999999998 78899998644346999999999999999988876664
No 25
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=95.17 E-value=0.056 Score=60.30 Aligned_cols=74 Identities=15% Similarity=0.193 Sum_probs=58.4
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch--hccHHHhhcCCeEechhH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY--EICEPFLEKGAAVYSSEL 903 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~--~~~~~llk~Gi~VVSsEW 903 (948)
.+||.|++|.||+....++++++++|+..||+|.....+. ..+||..+.+- .....+.+.|++|++.+-
T Consensus 230 ~~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~---------t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~ 300 (313)
T PRK06063 230 RPLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRD---------TSLVVCNDPAPEQGKGYHARQLGVPVLDEAA 300 (313)
T ss_pred CcccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccC---------ccEEEECCCCCcccHHHHHHHcCCccccHHH
Confidence 4689999999999987789999999999999998876442 13555555443 456667778999999999
Q ss_pred HHHHH
Q 002240 904 LLNGM 908 (948)
Q Consensus 904 ILdSI 908 (948)
+++-|
T Consensus 301 f~~ll 305 (313)
T PRK06063 301 FLELL 305 (313)
T ss_pred HHHHH
Confidence 98744
No 26
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=95.15 E-value=0.031 Score=63.41 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=74.2
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
.+|++|..|.|+++.+|.+.+|+.-.-..|+++-....+ +..++|..-.....+......|..||+.|||+
T Consensus 315 ~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~---------gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~ 385 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNA---------GSTHLICAFPNTPKYRQVEGNGGTIVSKEWIT 385 (508)
T ss_pred HHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCC---------CceeEEEecCCCcchhhcccCCceEeeHHHHH
Confidence 369999999999999999999999998999987554321 33566655555656666677899999999999
Q ss_pred HHHhcC-ccCcccCccccccccccc
Q 002240 906 NGMVTQ-KLEYERHRLFVDNVKRTR 929 (948)
Q Consensus 906 dSIL~Q-kLE~E~y~Lf~d~v~~tr 929 (948)
+|.-.. .|++.+|.+......+.-
T Consensus 386 ~Cy~~kk~lp~rrYlm~~~~p~~p~ 410 (508)
T KOG3226|consen 386 ECYAQKKLLPIRRYLMHAGKPWRPS 410 (508)
T ss_pred HHHHHHhhccHHHHHhcCCCCCCCC
Confidence 998865 469999999887554433
No 27
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=94.85 E-value=0.011 Score=71.10 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=74.6
Q ss_pred chhhhhccCCCeEEEEcCCCCHH---HHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCC-CCeecHHH
Q 002240 711 KDLRKRRDMASIQVLFSHHLDED---IIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASG-KPVVTHLW 785 (948)
Q Consensus 711 K~sr~rr~ms~vrV~FSGf~dee---~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~G-ipIVSp~W 785 (948)
....+++.+.++.++|||+.+.- .....-.+...+|..++.++. ++||+|+-++ +|.|...|...+ ++||.+.|
T Consensus 434 i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~-gt~k~~~a~~~~~~~Vv~~~w 512 (635)
T KOG0323|consen 434 IPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANA-GTKKVYKAVVSGSAKVVNAAW 512 (635)
T ss_pred hhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhcc-CcceeeccccccceeEechhH
Confidence 33455567889999999965321 011223356678988887776 8999999987 599999999887 99999999
Q ss_pred HHHHHHhCCCCCCCCcccCCc
Q 002240 786 LESIAQVKIHIDEESYLLRDT 806 (948)
Q Consensus 786 LedClkaGk~VDEe~YeL~D~ 806 (948)
|..|++....++|..|-+.+.
T Consensus 513 l~~~~e~w~~v~ek~~~l~~~ 533 (635)
T KOG0323|consen 513 LWRSLEKWGKVEEKLEPLDDD 533 (635)
T ss_pred HHHHHHHhcchhccccccccc
Confidence 999999999999999987764
No 28
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=94.81 E-value=0.066 Score=67.77 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=67.1
Q ss_pred ccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch----hccHHHhhcCCeEe
Q 002240 824 RKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY----EICEPFLEKGAAVY 899 (948)
Q Consensus 824 rk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~----~~~~~llk~Gi~VV 899 (948)
+..++|.|+.|.+.+........++.+|+.+||++...... +.++||+++ +. ..+..+...+++||
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~---------~~t~l~tt~-e~~k~~~kv~qAk~~~ipIV 458 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKK---------DTNCLVVCG-ELDDEDAEMRKARRMKIPIV 458 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccC---------CceEEEccH-HhhhcchHHHHHHhcCCCcc
Confidence 45689999999999988777899999999999999886421 234666664 32 22445566799999
Q ss_pred chhHHHHHHhcC-ccCcccCccc
Q 002240 900 SSELLLNGMVTQ-KLEYERHRLF 921 (948)
Q Consensus 900 SsEWILdSIL~Q-kLE~E~y~Lf 921 (948)
+.+||.+|+... .+.++.|.+-
T Consensus 459 sedwL~ds~~~~~~~p~~~y~~~ 481 (981)
T PLN03123 459 REDYLVDCFKKKKKLPFDKYKLE 481 (981)
T ss_pred cHHHHHHHHhccccCcchhhhhc
Confidence 999999999976 5677777553
No 29
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=94.74 E-value=0.065 Score=65.52 Aligned_cols=71 Identities=10% Similarity=0.019 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHH
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIA 790 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedCl 790 (948)
+.+-.|+|||.........++++|+.+||.|.++++ ++++||++.-. +-|+-.|-..|+||++.+.+.+-+
T Consensus 594 l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~a-GsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 594 LFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKA-GLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred cCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCC-CchHHHHHHcCCEEecHHHHHHHh
Confidence 778999999965433345788999999999999998 68899998533 569999999999999999887743
No 30
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=94.34 E-value=0.063 Score=63.09 Aligned_cols=109 Identities=11% Similarity=0.205 Sum_probs=64.6
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEecc-C-cccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERL-G-RSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSEL 903 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~-p-rs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEW 903 (948)
..||.|+.|||...+ +++.|.-||.++||.|.-.. . -.+.++....-.-.||--+..... -.|-..|-+.|
T Consensus 325 kslF~glkFfl~reV--PresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~-----v~gR~YvQPQW 397 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREV--PRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTS-----VIGRTYVQPQW 397 (570)
T ss_pred HHHhhcceeeeeccC--chHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccce-----eeeeeeecchh
Confidence 579999999999877 68999999999999998552 1 111221100000122222221111 12556889999
Q ss_pred HHHHHhcCcc-CcccCccccccccccccccceeccCCceee
Q 002240 904 LLNGMVTQKL-EYERHRLFVDNVKRTRSTIWLRKDGHKFHP 943 (948)
Q Consensus 904 ILdSIL~QkL-E~E~y~Lf~d~v~~trs~~w~~~~~~~f~p 943 (948)
|+|||-...+ .-+.| |.....+--.+-|..-..+.++|
T Consensus 398 vfDsvNar~llpt~~Y--~~G~~LPpHlSPFv~~~~~~yiP 436 (570)
T KOG2481|consen 398 VFDSVNARLLLPTEKY--FPGKALPPHLSPFVDEKEGDYIP 436 (570)
T ss_pred hhhhccchhhccHhhh--CCCccCCcccCccccccccCcCC
Confidence 9999986544 33433 33333344445566666666776
No 31
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=94.31 E-value=0.073 Score=64.89 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=55.3
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHH
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLW 785 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~W 785 (948)
.+.+-.|||||.........++++++.+||.|.++++ ++++||++.-. +-|+-.|...|++|++.+.
T Consensus 584 ~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~-gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 584 PLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKA-GSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCC-ChHHHHHHHcCCcEechhh
Confidence 3778999999976533345688999999999999998 68899998643 4599999999999998764
No 32
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=93.78 E-value=0.053 Score=63.67 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=61.5
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC---------CC--ceEEEeCCCCChHHHHHHHhCCCCeecHHHH
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI---------TD--ATHFVTDIFVRTRNMLEAIASGKPVVTHLWL 786 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddi---------sd--~THLVA~k~~RT~KfL~AIA~GipIVSp~WL 786 (948)
=+.++.+.++.-.+.+ .|.-+|..+||.|.-+. .+ .||=|++.+.-+.+| .|.--|.|+||
T Consensus 327 lF~glkFfl~reVPre---sL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~YvQPQWv 398 (570)
T KOG2481|consen 327 LFSGLKFFLNREVPRE---SLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTYVQPQWV 398 (570)
T ss_pred HhhcceeeeeccCchH---HHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeeeecchhh
Confidence 3778888888766544 56789999999987653 13 599999987644443 46677999999
Q ss_pred HHHHHhCCCCCCCCcccC
Q 002240 787 ESIAQVKIHIDEESYLLR 804 (948)
Q Consensus 787 edClkaGk~VDEe~YeL~ 804 (948)
.+|+.+|.+++-+.|...
T Consensus 399 fDsvNar~llpt~~Y~~G 416 (570)
T KOG2481|consen 399 FDSVNARLLLPTEKYFPG 416 (570)
T ss_pred hhhccchhhccHhhhCCC
Confidence 999999999999999654
No 33
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.21 Score=60.85 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=59.4
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHH
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESI 789 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedC 789 (948)
..+.+-.|+|||.++.-...+.+.+|+.|||+|+.+++ +.+.||++.-- +-|+-.|...|++|++.+++.+-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~a-GSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENA-GSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCC-ChHHHHHHHcCCeEecHHHHHHh
Confidence 34788999999987644455678899999999999999 56677777643 55999999999999999998764
No 34
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=93.31 E-value=0.58 Score=52.04 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=85.2
Q ss_pred HHHHHHHcCCEEeccCCCceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhC-CCCCCCCcccCCchhhhhcCCCh
Q 002240 738 QKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK-IHIDEESYLLRDTKKEKEFGFSM 816 (948)
Q Consensus 738 LKKiIk~LGGsVvddisd~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaG-k~VDEe~YeL~D~e~Eke~gfsL 816 (948)
|..+...+|... . .|=-.....-|..++.+++.-.-+-+..+|.+.+.-- ..+....|.............+.
T Consensus 130 L~~L~~~~gi~~-----~-~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (309)
T PRK06195 130 LNTVNNFLGYEF-----K-HHDALADAMACSNILLNISKELNSKDINEISKLLGVTLGYVNENGYKPSSRKGRILKRSNR 203 (309)
T ss_pred HHHHHHHcCCCC-----c-ccCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhCCccccccccCCCcccccccccccCCC
Confidence 345667777531 1 2333333444777888887666666666666655421 22333444322111100000000
Q ss_pred hHH-hhhc---c-cCCCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch-----
Q 002240 817 PAS-LARA---R-KHPLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY----- 885 (948)
Q Consensus 817 ~~S-LarA---r-k~~LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~----- 885 (948)
... .... . ....|.|++|+||+... .++++++++|+..||+|....... .+ +||.+..+.
T Consensus 204 ~~~~~~~~~~~~~~~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~--------t~-~lV~G~~~~~~~~~ 274 (309)
T PRK06195 204 QAPRKKKKIIESFGFTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKK--------TT-YLVTNTKDIEDLNR 274 (309)
T ss_pred CCCcccccccccCCCccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccC--------ce-EEEECCCcchhhcc
Confidence 000 0000 0 13479999999999874 679999999999999998876432 13 444443221
Q ss_pred ----hccHHHhh-----cCCeEechhHHHHHH
Q 002240 886 ----EICEPFLE-----KGAAVYSSELLLNGM 908 (948)
Q Consensus 886 ----~~~~~llk-----~Gi~VVSsEWILdSI 908 (948)
..+..+.+ .+++|++.+-+++-|
T Consensus 275 ~~~~~K~~kA~~l~~~g~~i~ii~E~~f~~l~ 306 (309)
T PRK06195 275 EEMSNKLKKAIDLKKKGQNIKFLNEEEFLQKC 306 (309)
T ss_pred cCcChHHHHHHHHHhCCCCcEEecHHHHHHHH
Confidence 12222222 289999998888743
No 35
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=93.09 E-value=0.27 Score=60.37 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=54.9
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 827 ~LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
.+|.|++|+||+... .++++++++|+..||+|....... .+ +||.+++--.....+.+.|++|++.+.++
T Consensus 592 ~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkk--------td-~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~ 662 (669)
T PRK14350 592 SFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKY--------LD-FLLVGEKAGLKLKKANNLGIKIMSLFDIK 662 (669)
T ss_pred CccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCC--------Cc-EEEECCCCCchHHHHHHcCCEEecHHHHH
Confidence 469999999999874 689999999999999999875432 13 44555433345566777899999999998
Q ss_pred H
Q 002240 906 N 906 (948)
Q Consensus 906 d 906 (948)
.
T Consensus 663 ~ 663 (669)
T PRK14350 663 S 663 (669)
T ss_pred H
Confidence 7
No 36
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=92.56 E-value=0.15 Score=58.50 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=54.7
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCc----hhcc-HHHhh---cCCe
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEED----YEIC-EPFLE---KGAA 897 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD----~~~~-~~llk---~Gi~ 897 (948)
..||.|+.|||+..+ +.+.|+-||.+|||.|+... + +.+ ..+ +.+-| .++| ++.+. .|..
T Consensus 348 ~slFS~f~FyisreV--p~dsLefiilscGG~V~~~p--~-~~~------i~~-~~~vD~~vth~i~drp~~~~kvegrt 415 (591)
T COG5163 348 KSLFSGFKFYISREV--PGDSLEFIILSCGGSVVGSP--C-EAD------IHV-SEKVDEKVTHQIVDRPVMKNKVEGRT 415 (591)
T ss_pred hhhhhceEEEEeccc--cchHHHHHHHHcCCcccCch--h-hcc------CCc-hhhccchhhhhhccchhhhhhhccee
Confidence 479999999999876 57899999999999998652 1 111 011 11111 1111 23332 3677
Q ss_pred EechhHHHHHHhcCccCcccCcc
Q 002240 898 VYSSELLLNGMVTQKLEYERHRL 920 (948)
Q Consensus 898 VVSsEWILdSIL~QkLE~E~y~L 920 (948)
.+.+.||++||-+.+|......+
T Consensus 416 YiQPQw~fDsiNkG~l~~~~~Y~ 438 (591)
T COG5163 416 YIQPQWLFDSINKGKLACVENYC 438 (591)
T ss_pred eechHHHHhhhccccchhhhhcc
Confidence 89999999999998885444333
No 37
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=91.62 E-value=0.52 Score=57.87 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=55.1
Q ss_pred CCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHHH
Q 002240 828 LLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLN 906 (948)
Q Consensus 828 LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILd 906 (948)
.|.|++|+||+... .++++++++|+..||+|....... .+ +||.+++.-.....+.+.|++|++.+-+++
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~k--------t~-~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~ 660 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKK--------TD-LVVAGEAAGSKLAKAQELGIEVLDEEEFLR 660 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCC--------CC-EEEECCCCChHHHHHHHcCCeEEcHHHHHH
Confidence 49999999999885 489999999999999998876432 13 444444333455666678999999999987
Q ss_pred HH
Q 002240 907 GM 908 (948)
Q Consensus 907 SI 908 (948)
-|
T Consensus 661 ~l 662 (665)
T PRK07956 661 LL 662 (665)
T ss_pred HH
Confidence 54
No 38
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=91.44 E-value=0.17 Score=57.99 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC------------CceEEEeCCCCChHHHHHHHhCCCCeecHHHH
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT------------DATHFVTDIFVRTRNMLEAIASGKPVVTHLWL 786 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis------------d~THLVA~k~~RT~KfL~AIA~GipIVSp~WL 786 (948)
++++.+.+|.-.+.+ .+.-+|...||.|..+.. .+||-|++++.-.-| ..|.--|.|+||
T Consensus 351 FS~f~FyisreVp~d---sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~k-----vegrtYiQPQw~ 422 (591)
T COG5163 351 FSGFKFYISREVPGD---SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNK-----VEGRTYIQPQWL 422 (591)
T ss_pred hhceEEEEeccccch---HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhh-----hcceeeechHHH
Confidence 667788877765554 467789999999865431 489999987642222 468888999999
Q ss_pred HHHHHhCCCCCCCCcccC
Q 002240 787 ESIAQVKIHIDEESYLLR 804 (948)
Q Consensus 787 edClkaGk~VDEe~YeL~ 804 (948)
.+|+..|.+..-+.|...
T Consensus 423 fDsiNkG~l~~~~~Y~~G 440 (591)
T COG5163 423 FDSINKGKLACVENYCVG 440 (591)
T ss_pred Hhhhccccchhhhhcccc
Confidence 999999999998888754
No 39
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=91.41 E-value=0.59 Score=57.06 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=58.1
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 827 ~LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
.+|.|++|.+|+... -++++.+.+|++.||+|....... .-+||++++-=..+..+.+.|++|.+.++++
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkk---------tD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~ 663 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKK---------TDYVVAGENAGSKLAKAQELGVKIIDEEEFL 663 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceeccc---------ccEEEEcCCCChHHHHHHHcCCeEecHHHHH
Confidence 679999999999876 789999999999999998876432 1266666654446677788899999999988
Q ss_pred HH
Q 002240 906 NG 907 (948)
Q Consensus 906 dS 907 (948)
.-
T Consensus 664 ~l 665 (667)
T COG0272 664 AL 665 (667)
T ss_pred Hh
Confidence 63
No 40
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=91.37 E-value=0.63 Score=57.43 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=56.1
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch-hccHHHhhcCCeEechhHH
Q 002240 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY-EICEPFLEKGAAVYSSELL 904 (948)
Q Consensus 827 ~LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~-~~~~~llk~Gi~VVSsEWI 904 (948)
..|.|++|+||+... .++++++.+|+..||+|....... .+ +||.++..- .....+.+.|++|++.+-|
T Consensus 608 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~k--------t~-~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f 678 (689)
T PRK14351 608 DALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGN--------TD-YLVVGENPGQSKRDDAEANDVPTLDEEEF 678 (689)
T ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCC--------cc-EEEEcCCCChhHHHHHHHCCCeEecHHHH
Confidence 469999999999885 489999999999999998875432 13 444444322 4556667789999999999
Q ss_pred HHHHh
Q 002240 905 LNGMV 909 (948)
Q Consensus 905 LdSIL 909 (948)
++-|-
T Consensus 679 ~~ll~ 683 (689)
T PRK14351 679 EELLA 683 (689)
T ss_pred HHHHH
Confidence 87543
No 41
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=88.57 E-value=0.55 Score=58.68 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=63.2
Q ss_pred ccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCccccc-----------------CCCCCCceEEEecCCchh
Q 002240 824 RKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALK-----------------DDKLPDDLLILSCEEDYE 886 (948)
Q Consensus 824 rk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lK-----------------D~~~pd~lIIISceeD~~ 886 (948)
..+.||.||.|.++.-+ .+....+.-++.+||.|++.--+..+. ....--..+||+. ..+.
T Consensus 921 ~gkniFd~cvF~lTsa~-~sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsd-th~R 998 (1176)
T KOG3548|consen 921 IGKNIFDGCVFMLTSAN-RSDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISD-THYR 998 (1176)
T ss_pred hCcchhcceeEEEeccc-cchhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeeh-hhhH
Confidence 34689999999999765 345667777888999998763221110 0001112344442 2222
Q ss_pred --ccHHHhhcCCeEechhHHHHHHhcCc-cCcccCccccc
Q 002240 887 --ICEPFLEKGAAVYSSELLLNGMVTQK-LEYERHRLFVD 923 (948)
Q Consensus 887 --~~~~llk~Gi~VVSsEWILdSIL~Qk-LE~E~y~Lf~d 923 (948)
.+...+..|+|||...||-+|+-+.+ ++|-.|+|..-
T Consensus 999 t~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsG 1038 (1176)
T KOG3548|consen 999 THKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSG 1038 (1176)
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCc
Confidence 22334578999999999999999755 59999988643
No 42
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=87.69 E-value=1.1 Score=55.09 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=50.5
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhH
Q 002240 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSEL 903 (948)
Q Consensus 827 ~LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEW 903 (948)
..|.|++|+||+... .++++++.+|+..||+|....... .+ +||.+++.-..+..+.+.|++|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~k--------t~-~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKK--------TD-YVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCC--------cc-EEEECCCCChHHHHHHHcCCcEechhh
Confidence 469999999999875 689999999999999998876432 13 444444333355566677999998764
No 43
>COG5275 BRCT domain type II [General function prediction only]
Probab=86.18 E-value=3.2 Score=44.91 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=54.8
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHH
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESI 789 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedC 789 (948)
.+.+..|+|||.+..-.....+.+++.+||.|+-.++ ..|.||.+.-.--.||-.+-.++|+++..+=+..-
T Consensus 156 cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~L 228 (276)
T COG5275 156 CLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSL 228 (276)
T ss_pred cccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHH
Confidence 5779999999987532233457789999999999887 78888888654456677777789998887766543
No 44
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=83.49 E-value=0.61 Score=56.85 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=74.0
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCC
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHI 796 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddisd~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~V 796 (948)
..+.+..++|=||.+++ ...+...+..-||..+.+...|||||.+.- ++.-.-.+......+|...|..=+++.|+|.
T Consensus 209 ~~feg~~~~f~gF~~ee-~~~m~~sle~~gg~~a~~d~~cthvvv~e~-~~~~~p~~~s~~~~~vk~ewfw~siq~g~~a 286 (850)
T KOG3524|consen 209 GVFEGLSLFFHGFKQEE-IDDMLRSLENTGGKLAPSDTLCTHVVVNED-NDEVEPLAVSSNQVHVKKEWFWVSIQRGCCA 286 (850)
T ss_pred ccccCCeEeecCCcHHH-HHHHHHHHHhcCCcccCCCCCceeEeecCC-ccccccccccccceeecccceEEEEecchhc
Confidence 46788999999998776 456777888889999998889999999964 4555556778899999999999999999999
Q ss_pred CCCCcccCCc
Q 002240 797 DEESYLLRDT 806 (948)
Q Consensus 797 DEe~YeL~D~ 806 (948)
-|..|.+.+.
T Consensus 287 ~e~~yl~~~~ 296 (850)
T KOG3524|consen 287 IEDNYLLPTG 296 (850)
T ss_pred cccceecccc
Confidence 9999988765
No 45
>COG5275 BRCT domain type II [General function prediction only]
Probab=59.34 E-value=28 Score=38.11 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=57.3
Q ss_pred CCCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHH
Q 002240 826 HPLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELL 904 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWI 904 (948)
...|.|+.|.|++... -+++.-+.||...||.|+..... ...++|+..+........+.+.+|+++..|-|
T Consensus 154 ~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSs--------kTtflvlGdnaGP~K~ekiKqlkIkaidEegf 225 (276)
T COG5275 154 RECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSS--------KTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGF 225 (276)
T ss_pred cccccccEEEEecccccccchhHHHHHHHhCCeeeccccc--------ceeEEEecCCCChHHHHHHHHhCCccccHHHH
Confidence 3579999999999876 67889999999999999865321 12355555555666666677789999999988
Q ss_pred HHHHh
Q 002240 905 LNGMV 909 (948)
Q Consensus 905 LdSIL 909 (948)
..-|-
T Consensus 226 ~~LI~ 230 (276)
T COG5275 226 DSLIK 230 (276)
T ss_pred HHHHh
Confidence 76554
No 46
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=55.24 E-value=20 Score=45.49 Aligned_cols=128 Identities=10% Similarity=0.104 Sum_probs=82.5
Q ss_pred cchhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEecc--CCCceEEEeCCCCChHHHHHHHh---CCCCeecHH
Q 002240 710 LKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSS--ITDATHFVTDIFVRTRNMLEAIA---SGKPVVTHL 784 (948)
Q Consensus 710 ~K~sr~rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvdd--isd~THLVA~k~~RT~KfL~AIA---~GipIVSp~ 784 (948)
+........++++.++.-|..++. .+++++.-...|+..... -...||+|+..+- .++. .+--..++.
T Consensus 39 ~~~~t~~s~fs~is~~~ngs~~e~-~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~------a~~vk~~~~~~~~~~e 111 (1016)
T KOG2093|consen 39 WDAATGSSSFSGISISVNGSTDES-ANELKLQNMFHTGASAASYERSGTENIIAQGLP------ADLVKGFTIPKHISIE 111 (1016)
T ss_pred ccCcCCcceeeeeeeccCCccccc-hHHHhhhhhhcccccccccccccceeeecccch------HHHhccccchhhhcHH
Confidence 555555667788888887777664 456777777888876533 3479999998542 1111 223356899
Q ss_pred HHHHHHHhCCCCCCCCcccCCc-hhhhhcCCChhHHhhhc-----ccCCCCCCceEEEeCCCCCCH
Q 002240 785 WLESIAQVKIHIDEESYLLRDT-KKEKEFGFSMPASLARA-----RKHPLLKDQRVLITPNIKPSK 844 (948)
Q Consensus 785 WLedClkaGk~VDEe~YeL~D~-e~Eke~gfsL~~SLarA-----rk~~LF~G~rFyIT~~vkPsk 844 (948)
|+.+|.+.|..+...+|.+... ..++......+.+...- .-.++|....|+|.+...|..
T Consensus 112 ~iie~~~~~~~~~~~~~~~~t~~~h~q~~~~~~~~~~~~D~q~~~~~~ki~~~n~ikinG~~E~~~ 177 (1016)
T KOG2093|consen 112 WIIECCENGMDVGYYPYQLYTGQSHEQAQLAFPVTSFPKDQQISSQSSKIFKNNVIKINGYNEPES 177 (1016)
T ss_pred HHHHHHhccCccccccceeeccchhcccccCCCcccCCccccccccchhccccceeeecCCCCccc
Confidence 9999999999999988887643 22222211111111111 125799999999998765543
No 47
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=49.04 E-value=37 Score=39.67 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCC-ceEEEeCC-CCChHHHHHHHhCCCCeecHHHHHHHHH
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITD-ATHFVTDI-FVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddisd-~THLVA~k-~~RT~KfL~AIA~GipIVSp~WLedClk 791 (948)
..+++|+||+-...+. ..+...+-..|..+.+.++- ...|||+. ..-+-|-+.|-..|+|+|+..=..+++.
T Consensus 295 v~Gm~v~~~~e~~~~~-d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 295 VAGMEVVVAPEITMDP-DIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred ccCcEEEEeCCccCCH-HHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 3489999999653332 23556677889999999984 55666765 3458899999999999999876666554
No 48
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=33.68 E-value=96 Score=36.43 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=55.4
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch---hccHHHhhcCCeEechh
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY---EICEPFLEKGAAVYSSE 902 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~---~~~~~llk~Gi~VVSsE 902 (948)
.+|-+|+.|-|++.+.-+.++|.+-+-.+|=.+.+...+- .-||.|.... .......+.|+|+++-+
T Consensus 292 ~~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~----------tslvv~n~~~~~~gk~~~a~~~gipl~~d~ 361 (377)
T PRK05601 292 KGLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQ----------TSVVVCNQTRDLDGKAMHAQRKGIPLLSDV 361 (377)
T ss_pred CccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccc----------eeEEEeCCCCCccchhhhhhhcCCCccCHH
Confidence 4699999999999999889999888888888777765442 2344554432 23344557899999999
Q ss_pred HHHHHHh
Q 002240 903 LLLNGMV 909 (948)
Q Consensus 903 WILdSIL 909 (948)
=||..+-
T Consensus 362 ~fl~~~~ 368 (377)
T PRK05601 362 AFLAAVE 368 (377)
T ss_pred HHHHHHH
Confidence 9988765
No 49
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.09 E-value=67 Score=41.49 Aligned_cols=120 Identities=18% Similarity=0.072 Sum_probs=103.2
Q ss_pred ccCchhhhhhhcccccccCCCCCCCCCCCCCCCCCCCcccccccccccccccCCCCcccchhhhhHHHHHHHhcCCcccc
Q 002240 60 RVGSSTVRKLFTEDSVSQDKGLPNNGDNAAGGENLLQFPVNDDELAGLSYVDSQEPGEFSEANALTFVEQFIEKNNFVDF 139 (948)
Q Consensus 60 ~~~~st~rklf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~LsYv~SqEPg~~SQanAl~~Vd~~i~~~~~~~~ 139 (948)
+-.-.|++..|..+++.++- +.+.|+.+...|.|++.|+||..+++ |...+|-|+++. ...+
T Consensus 150 ~~~~~~~k~~~~~~~p~~~~----------------~~~~~~~~~~~l~~~~~~dP~~~~~~-~~~~~~~~~~~~-~~~~ 211 (896)
T KOG2043|consen 150 TPNDDTAKNHHVAISPDLSF----------------PSPDPGFLTPFLEDLDGQDPGSFPAD-AKSLTDAFGSID-RPIG 211 (896)
T ss_pred cccccccccCCCCCCccccc----------------CCCCcccccCcccccccCCCcccCCc-cccCCCCCCCcc-cccc
Confidence 34456777777777777663 23358899999999999999999999 999999999997 6666
Q ss_pred cccc--CCCCcCCCCCCCcccCcchhhhhhhccCCCCCCCCccccccCCCCcCCCccccccc
Q 002240 140 DHEV--DLGKSKGGKSKPVSTAKGPQSLAKKSNDRSKAGKTGIYDWDDSREDEGGGDLFCRR 199 (948)
Q Consensus 140 ~~e~--~~~k~~~~Ks~~v~~~kg~~~LAkk~~~~~~~~~~~ifdw~D~~ed~gggd~f~~r 199 (948)
.++. ++++.+..+.+......|.|-++.++-...+. -.|+||+|.+++.+++..|-++
T Consensus 212 ~~~~~~~~~~~~~s~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~a 271 (896)
T KOG2043|consen 212 HSANSPDLERTTFSQPKNQDMNVTWQFPMFKLQKGTPV--QSILDHQDFREGLPTAPELNRA 271 (896)
T ss_pred ccccCCCcccccccCCCcccccccccccccccccCCCc--ccchhhhhhhccCCCCchhhhh
Confidence 5554 78899999999999999999999999998888 8899999999999999999885
No 50
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=28.76 E-value=53 Score=34.42 Aligned_cols=63 Identities=25% Similarity=0.266 Sum_probs=36.4
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCE--E--ecc---------CCCceEEEeCCC--CChHHHHHHHhCCCCeecH
Q 002240 721 SIQVLFSHHLDEDIIKQQKKILDRLGAS--E--VSS---------ITDATHFVTDIF--VRTRNMLEAIASGKPVVTH 783 (948)
Q Consensus 721 ~vrV~FSGf~dee~~k~LKKiIk~LGGs--V--vdd---------isd~THLVA~k~--~RT~KfL~AIA~GipIVSp 783 (948)
.+++++-|..+......++.++..+|.. | ... +..|+.+|.+.. .-..++++|+++|+|||..
T Consensus 234 ~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~ 311 (375)
T cd03821 234 DWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTT 311 (375)
T ss_pred CeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEc
Confidence 5667776654332223344444555531 1 111 124666776542 2267899999999999985
No 51
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.28 E-value=2.3e+02 Score=33.67 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=41.6
Q ss_pred ccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEe
Q 002240 824 RKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVY 899 (948)
Q Consensus 824 rk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VV 899 (948)
...++|+|.+|-++-...+..-.|.+.+.++|++|.-.... | .|. +.+.+..+...|++||
T Consensus 25 ~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~n--------p-----~st--qd~vaaaL~~~gi~v~ 85 (406)
T TIGR00936 25 SEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCN--------P-----LST--QDDVAAALAKAGIPVF 85 (406)
T ss_pred hccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccC--------C-----ccc--cHHHHHHHHhCCceEE
Confidence 34688999999888777777788999999999997533100 0 122 2223445566799998
No 52
>PF15101 DUF4557: Domain of unknown function (DUF4557)
Probab=23.39 E-value=1.6e+02 Score=32.15 Aligned_cols=78 Identities=13% Similarity=0.220 Sum_probs=57.6
Q ss_pred CCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchh---cc---HHHhhcCCeEechh
Q 002240 829 LKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYE---IC---EPFLEKGAAVYSSE 902 (948)
Q Consensus 829 F~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~---~~---~~llk~Gi~VVSsE 902 (948)
|+|.+-+++..+. ..++++=...||.|+. ++. --+|.||..+.. .+ ..|++.++.|+.+-
T Consensus 1 F~~q~aWFs~SVs---~~~~~~Wv~~GG~isd--~~~---------AdFLFS~DAshpDT~~iy~S~dY~~d~aTVFha~ 66 (212)
T PF15101_consen 1 FQGQRAWFSGSVS---QDLRQFWVKEGGTISD--WDA---------ADFLFSCDASHPDTARIYQSLDYIEDRATVFHAS 66 (212)
T ss_pred CCCceeeeecCcc---hHHHHHHHhcCCccCC--hhh---------cceeeecCCCCcchHhhhhhhhhhhcCeeeeeHH
Confidence 8899999998874 5688999999999886 221 127788765432 11 24678889999999
Q ss_pred HHHHHHhc---CccCcccCcc
Q 002240 903 LLLNGMVT---QKLEYERHRL 920 (948)
Q Consensus 903 WILdSIL~---QkLE~E~y~L 920 (948)
||..+.-. ..+.+..|.|
T Consensus 67 yl~a~~na~s~~sV~LGhyVL 87 (212)
T PF15101_consen 67 YLSAVANAESKNSVALGHYVL 87 (212)
T ss_pred HHHHHhhhhhcCCccccceEe
Confidence 99876654 4568888988
No 53
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.34 E-value=71 Score=32.30 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=23.5
Q ss_pred CceeeccCCcccccccchhhhhHHHHH
Q 002240 238 DGITMRSDSRVTFNNIKKNEKKAEEAQ 264 (948)
Q Consensus 238 ~~~~~~sdsr~~~~~~k~~~k~~~~~~ 264 (948)
+.|+++|.||++-+++..|.+|+..-.
T Consensus 107 ~vi~vRSaSRiG~SDlGVNRrR~EqiR 133 (141)
T COG4446 107 NVIWVRSASRIGYSDLGVNRRRAEQIR 133 (141)
T ss_pred ceEEEeeccccccccccccHHHHHHHH
Confidence 458999999999999999999997643
No 54
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=20.34 E-value=3.2e+02 Score=28.21 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=43.9
Q ss_pred CCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHHHH
Q 002240 828 LLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNG 907 (948)
Q Consensus 828 LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILdS 907 (948)
-+.|..|++++.....-..|+++|...+.. +..++||++ |..........|+.++++++|+.-
T Consensus 64 ~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~~---------------~~~v~VVTS--D~~iq~~~~~~GA~~iss~ef~~~ 126 (166)
T PF05991_consen 64 EYGGIEVVFTKEGETADDYIERLVRELKNR---------------PRQVTVVTS--DREIQRAARGRGAKRISSEEFLRE 126 (166)
T ss_pred eeCceEEEECCCCCCHHHHHHHHHHHhccC---------------CCeEEEEeC--CHHHHHHHhhCCCEEEcHHHHHHH
Confidence 457888888876443344567777654321 234677764 444444456789999999999988
Q ss_pred HhcC
Q 002240 908 MVTQ 911 (948)
Q Consensus 908 IL~Q 911 (948)
|...
T Consensus 127 l~~~ 130 (166)
T PF05991_consen 127 LKAA 130 (166)
T ss_pred HHHH
Confidence 8754
Done!