Query 002240
Match_columns 948
No_of_seqs 197 out of 734
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sqd_A PAX-interacting protein 100.0 5.6E-40 1.9E-44 337.8 18.6 201 719-920 14-218 (219)
2 2etx_A Mediator of DNA damage 100.0 2.6E-39 9E-44 328.6 20.8 204 711-924 2-205 (209)
3 3l41_A BRCT-containing protein 100.0 1.6E-38 5.5E-43 328.1 9.7 201 718-923 5-216 (220)
4 3al2_A DNA topoisomerase 2-bin 100.0 8E-31 2.7E-35 272.6 15.7 200 719-923 7-231 (235)
5 1l0b_A BRCA1; TANDEM-BRCT, thr 100.0 3.6E-29 1.2E-33 254.3 20.0 210 716-930 2-222 (229)
6 3u3z_A Microcephalin; DNA repa 100.0 1E-28 3.6E-33 250.4 15.7 183 721-921 11-198 (199)
7 1t15_A Breast cancer type 1 su 100.0 2E-27 6.9E-32 238.0 19.2 194 720-921 3-211 (214)
8 2nte_A BARD-1, BRCA1-associate 99.9 3.4E-26 1.2E-30 231.1 18.1 182 721-913 2-205 (210)
9 1kzy_C Tumor suppressor P53-bi 99.9 9.1E-25 3.1E-29 229.8 19.4 205 717-926 14-257 (259)
10 3olc_X DNA topoisomerase 2-bin 99.9 2.3E-22 7.8E-27 215.7 19.6 210 685-924 77-288 (298)
11 2vxb_A DNA repair protein RHP9 99.8 7.6E-21 2.6E-25 198.3 16.2 184 719-913 3-238 (241)
12 3t7k_A RTT107, regulator of TY 99.8 1.2E-18 4E-23 182.9 13.5 191 720-919 21-247 (256)
13 3ii6_X DNA ligase 4; XRCC4, NH 99.6 2.1E-14 7.2E-19 151.3 17.7 192 717-920 9-263 (263)
14 3l3e_A DNA topoisomerase 2-bin 99.5 4.5E-14 1.5E-18 129.6 9.7 87 717-804 14-103 (107)
15 1z56_C DNA ligase IV; DNA repa 99.5 6E-15 2.1E-19 153.8 0.4 192 718-920 5-261 (264)
16 2d8m_A DNA-repair protein XRCC 99.4 2E-13 6.9E-18 129.8 9.9 88 717-806 21-109 (129)
17 3l46_A Protein ECT2; alternati 99.4 5.1E-14 1.8E-18 132.4 4.4 87 718-806 21-108 (112)
18 2cou_A ECT2 protein; BRCT doma 99.4 8.3E-14 2.8E-18 129.2 3.3 88 717-806 11-99 (109)
19 4id3_A DNA repair protein REV1 99.3 2.2E-12 7.5E-17 113.8 9.2 82 718-803 7-91 (92)
20 2ebw_A DNA repair protein REV1 99.3 3.8E-12 1.3E-16 114.2 7.5 83 717-803 11-95 (97)
21 1wf6_A Similar to S.pombe -RAD 99.2 2.7E-11 9.3E-16 115.6 11.1 87 718-805 40-128 (132)
22 3pa6_A Microcephalin; BRCT dom 99.1 7.9E-11 2.7E-15 109.8 8.2 88 718-806 7-98 (107)
23 3ef0_A RNA polymerase II subun 99.1 6.2E-11 2.1E-15 131.3 8.6 88 715-803 279-371 (372)
24 3ef1_A RNA polymerase II subun 99.1 5.1E-11 1.7E-15 134.5 7.5 89 714-803 348-441 (442)
25 3olc_X DNA topoisomerase 2-bin 99.1 1.5E-10 5E-15 124.4 10.6 89 716-806 197-287 (298)
26 3pc6_A DNA repair protein XRCC 99.0 1.4E-09 4.7E-14 101.3 9.7 86 719-805 8-96 (104)
27 2ebw_A DNA repair protein REV1 98.8 5.8E-09 2E-13 93.5 8.4 88 825-922 9-97 (97)
28 4id3_A DNA repair protein REV1 98.8 1.6E-08 5.4E-13 89.1 9.2 86 826-920 5-91 (92)
29 3huf_A DNA repair and telomere 98.7 6.3E-08 2.2E-12 105.3 12.7 174 721-910 115-303 (325)
30 2d8m_A DNA-repair protein XRCC 98.7 6.3E-08 2.2E-12 92.0 9.9 96 826-930 20-116 (129)
31 3l46_A Protein ECT2; alternati 98.5 6.3E-08 2.1E-12 91.1 5.7 87 826-921 19-106 (112)
32 2cou_A ECT2 protein; BRCT doma 98.5 9.1E-08 3.1E-12 88.7 4.4 88 826-922 10-98 (109)
33 2jw5_A DNA polymerase lambda; 98.4 6.5E-08 2.2E-12 89.8 2.9 67 738-804 32-104 (106)
34 3l3e_A DNA topoisomerase 2-bin 98.4 5E-07 1.7E-11 82.8 8.5 89 826-923 13-105 (107)
35 1z56_C DNA ligase IV; DNA repa 98.4 8.8E-08 3E-12 99.9 2.1 87 719-805 161-263 (264)
36 2ep8_A Pescadillo homolog 1; A 98.4 4.9E-07 1.7E-11 83.4 6.8 76 719-802 13-100 (100)
37 3ii6_X DNA ligase 4; XRCC4, NH 98.3 1.3E-06 4.3E-11 92.2 9.6 89 825-923 7-98 (263)
38 2k6g_A Replication factor C su 98.3 1.9E-06 6.4E-11 80.8 9.2 76 718-793 32-108 (109)
39 2coe_A Deoxynucleotidyltransfe 98.3 1.5E-06 5.1E-11 83.0 8.4 82 719-802 21-112 (120)
40 2ebu_A Replication factor C su 98.3 2.1E-06 7.1E-11 81.0 9.2 76 718-793 22-98 (112)
41 1l7b_A DNA ligase; BRCT, autos 98.3 9E-07 3.1E-11 80.6 6.4 72 719-792 8-80 (92)
42 3pc6_A DNA repair protein XRCC 98.3 2.1E-06 7.3E-11 79.9 9.0 86 827-921 6-95 (104)
43 1kzy_C Tumor suppressor P53-bi 98.2 5.5E-06 1.9E-10 87.3 10.0 97 824-923 11-138 (259)
44 1wf6_A Similar to S.pombe -RAD 98.2 5.1E-06 1.7E-10 79.2 8.9 86 826-921 38-127 (132)
45 2vxb_A DNA repair protein RHP9 98.1 7.5E-06 2.6E-10 85.5 9.8 96 827-922 1-118 (241)
46 3pa6_A Microcephalin; BRCT dom 98.0 1.7E-05 5.9E-10 73.9 9.2 89 826-923 5-98 (107)
47 1l0b_A BRCA1; TANDEM-BRCT, thr 98.0 6.5E-06 2.2E-10 83.5 6.6 88 718-806 117-215 (229)
48 3u3z_A Microcephalin; DNA repa 98.0 3.3E-06 1.1E-10 85.7 4.4 79 718-804 119-198 (199)
49 3pc7_A DNA ligase 3; DNA repai 98.0 8E-06 2.7E-10 74.2 6.1 69 719-798 17-87 (88)
50 2cok_A Poly [ADP-ribose] polym 97.9 1.5E-05 5.1E-10 75.3 6.7 75 718-793 10-87 (113)
51 1t15_A Breast cancer type 1 su 97.9 9.1E-06 3.1E-10 81.2 4.6 87 718-805 115-212 (214)
52 2ep8_A Pescadillo homolog 1; A 97.8 3.7E-05 1.3E-09 70.9 8.2 86 826-918 10-99 (100)
53 3pc7_A DNA ligase 3; DNA repai 97.8 3.8E-05 1.3E-09 69.8 6.7 72 826-914 14-85 (88)
54 2l42_A DNA-binding protein RAP 97.7 3E-05 1E-09 71.8 5.5 85 826-925 9-99 (106)
55 2dun_A POL MU, DNA polymerase 97.7 4.1E-05 1.4E-09 74.3 6.4 84 719-802 11-105 (133)
56 2etx_A Mediator of DNA damage 97.7 6.9E-05 2.4E-09 76.1 7.6 88 716-805 113-203 (209)
57 2nte_A BARD-1, BRCA1-associate 97.6 1.9E-05 6.6E-10 79.6 2.6 83 717-799 103-209 (210)
58 1l7b_A DNA ligase; BRCT, autos 97.6 0.00011 3.8E-09 66.9 7.0 75 826-909 5-79 (92)
59 3ef0_A RNA polymerase II subun 97.6 0.00013 4.5E-09 81.0 8.7 87 826-921 280-372 (372)
60 3ef1_A RNA polymerase II subun 97.5 0.00015 5.1E-09 82.3 8.0 97 815-921 340-442 (442)
61 2cok_A Poly [ADP-ribose] polym 97.4 0.0003 1E-08 66.4 8.2 84 826-918 8-105 (113)
62 2k6g_A Replication factor C su 97.4 0.00062 2.1E-08 63.8 9.6 76 827-911 31-108 (109)
63 2ebu_A Replication factor C su 97.3 0.00069 2.4E-08 63.9 8.6 75 827-910 21-97 (112)
64 3sqd_A PAX-interacting protein 96.9 0.00085 2.9E-08 69.1 5.6 87 827-923 12-100 (219)
65 3al2_A DNA topoisomerase 2-bin 96.7 0.0027 9.1E-08 66.2 7.6 87 717-805 134-230 (235)
66 2coe_A Deoxynucleotidyltransfe 96.7 0.0058 2E-07 58.4 9.1 88 826-922 18-116 (120)
67 2jw5_A DNA polymerase lambda; 96.5 0.0018 6.2E-08 60.0 4.6 89 826-923 9-106 (106)
68 4gns_A Chitin biosynthesis pro 96.5 0.0063 2.2E-07 61.7 8.8 95 711-805 154-255 (290)
69 2l42_A DNA-binding protein RAP 96.0 0.0028 9.6E-08 58.9 2.5 82 719-809 12-100 (106)
70 2dun_A POL MU, DNA polymerase 95.8 0.01 3.5E-07 57.7 5.8 100 826-934 8-122 (133)
71 1dgs_A DNA ligase; AMP complex 95.5 0.0022 7.5E-08 76.2 0.0 74 718-793 587-661 (667)
72 2owo_A DNA ligase; protein-DNA 95.2 0.0034 1.2E-07 74.7 0.0 73 718-791 597-670 (671)
73 3l41_A BRCT-containing protein 94.0 0.041 1.4E-06 56.9 4.8 82 828-922 5-88 (220)
74 1dgs_A DNA ligase; AMP complex 89.7 0.062 2.1E-06 64.0 0.0 77 827-912 586-662 (667)
75 2owo_A DNA ligase; protein-DNA 88.3 0.09 3.1E-06 62.7 0.0 73 827-908 596-669 (671)
76 2k2w_A Recombination and DNA r 68.3 5.5 0.00019 38.1 4.9 35 825-861 10-44 (118)
77 3oq4_A DBF4, protein DNA52; DD 65.2 18 0.0006 35.4 7.8 57 736-792 33-97 (134)
78 3oq0_A DBF4, protein DNA52; DD 53.7 44 0.0015 33.3 8.4 57 736-792 50-114 (151)
79 3qbz_A DDK kinase regulatory s 45.7 28 0.00095 34.9 5.7 78 710-788 51-148 (160)
80 2bfw_A GLGA glycogen synthase; 38.7 82 0.0028 29.5 7.7 65 721-785 70-147 (200)
81 3qhp_A Type 1 capsular polysac 30.8 1.3E+02 0.0044 27.3 7.5 60 721-782 32-104 (166)
82 3fro_A GLGA glycogen synthase; 25.7 1.6E+02 0.0053 30.8 7.9 65 720-784 284-361 (439)
83 1f0k_A MURG, UDP-N-acetylgluco 20.1 2.4E+02 0.0083 28.9 7.9 59 721-784 212-281 (364)
No 1
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.6e-40 Score=337.83 Aligned_cols=201 Identities=32% Similarity=0.536 Sum_probs=184.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCCCC
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDE 798 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddisd~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~VDE 798 (948)
+.+++|+|||+.+.+ .+.+.++|+.|||.|++++.+|||||++.+.||.|||+|++.|+|||+++||.+|+++|+++||
T Consensus 14 ~~~~~i~~SG~~~~~-~~~l~~~i~~lGg~v~~~~~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l~e 92 (219)
T 3sqd_A 14 ELTPFVLFTGFEPVQ-VQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDE 92 (219)
T ss_dssp GGCCEEEECSCCHHH-HHHHHHHHHHTTCEECSSGGGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCCCS
T ss_pred CCCeEEEEeCCChHH-HHHHHHHHHHCCCEEeCCCCCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCCCh
Confidence 568999999998654 4678999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCcccCCchhhhhcCCChhHHhhhcccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcc--cc--cCCCCCC
Q 002240 799 ESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRS--AL--KDDKLPD 874 (948)
Q Consensus 799 e~YeL~D~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs--~l--KD~~~pd 874 (948)
++|++.|.++|+.|||++..++.++++.+||+|++|||++.+.|+++.|++||+++||+|+...|.. ++ +++..+.
T Consensus 93 ~~y~l~d~~~e~~~~~~l~~~l~ra~~~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~ 172 (219)
T 3sqd_A 93 QNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLS 172 (219)
T ss_dssp GGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSC
T ss_pred HhccCCCchhhhhcCCChHHHhhhhccccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCC
Confidence 9999999999999999999999999889999999999999999999999999999999999987643 11 1222334
Q ss_pred ceEEEecCCchhccHHHhhcCCeEechhHHHHHHhcCccCcccCcc
Q 002240 875 DLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERHRL 920 (948)
Q Consensus 875 ~lIIISceeD~~~~~~llk~Gi~VVSsEWILdSIL~QkLE~E~y~L 920 (948)
+++||+|++|...|..+.+.|++||++|||++||++|+|||+.|+|
T Consensus 173 ~~ivis~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q~ld~~~~~~ 218 (219)
T 3sqd_A 173 EIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTLDYESYKF 218 (219)
T ss_dssp EEEEEECGGGGGGGHHHHHTTCCCEETHHHHHHHHHTCCCTTTSBC
T ss_pred CEEEEecccHHHHHHHHHHCCCcEEeHHHHHHHHHheeecchhccc
Confidence 6899999999999999999999999999999999999999999987
No 2
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=100.00 E-value=2.6e-39 Score=328.57 Aligned_cols=204 Identities=27% Similarity=0.484 Sum_probs=179.6
Q ss_pred chhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHH
Q 002240 711 KDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIA 790 (948)
Q Consensus 711 K~sr~rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddisd~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedCl 790 (948)
++.++++...+++|+|||+.+.+ ++++|+.|||.+++++.+||||||+.+.||.|||+|++.|+|||+++||.+|+
T Consensus 2 ~~~~~~~~~~~~~v~~sG~~~~~----~~~~i~~lGg~~~~~~~~~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~ 77 (209)
T 2etx_A 2 HMTKLNQESTAPKVLFTGVVDAR----GERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSR 77 (209)
T ss_dssp ----------CCEEEECSSCCHH----HHHHHHHTTCEECSSTTTCSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHH
T ss_pred CcccccccCCCcEEEEeCCCcHH----HHHHHHHCCCEEeCCCCCceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHH
Confidence 35567788899999999998754 36789999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCcccCCchhhhhcCCChhHHhhhcccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCC
Q 002240 791 QVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDD 870 (948)
Q Consensus 791 kaGk~VDEe~YeL~D~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~ 870 (948)
++|+++||++|++.|...+..|+|+|..++.+++..+||+|++|||++...|+.+.|.+||+++||+|+...++..
T Consensus 78 ~~~~~l~e~~y~~~~~~~~~~~~~~l~~~~~~a~~~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~---- 153 (209)
T 2etx_A 78 KAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSY---- 153 (209)
T ss_dssp HHTSCCCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSC----
T ss_pred HcCCCCChhhccccChhhhhhcCCCHHHHHhhhhhCCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCC----
Confidence 9999999999999999999999999999999998889999999999999999999999999999999998766531
Q ss_pred CCCCceEEEecCCchhccHHHhhcCCeEechhHHHHHHhcCccCcccCcccccc
Q 002240 871 KLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERHRLFVDN 924 (948)
Q Consensus 871 ~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILdSIL~QkLE~E~y~Lf~d~ 924 (948)
....+||+|++|...|..+.+.|++||+.|||++||++|+|+++.|.|+.+.
T Consensus 154 --~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~ld~e~y~l~~~~ 205 (209)
T 2etx_A 154 --KPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLE 205 (209)
T ss_dssp --CTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHTCCCGGGGBCCTTC
T ss_pred --CCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhcccChHHheecCCC
Confidence 1246888999999899888899999999999999999999999999998764
No 3
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=100.00 E-value=1.6e-38 Score=328.07 Aligned_cols=201 Identities=25% Similarity=0.351 Sum_probs=175.2
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCCC
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHID 797 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddisd~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~VD 797 (948)
...+++|+|||+.+.+ ..++|+.|||.|++++.+||||||+++.||.|||+|++.|+|||+++||.+|+++|+++|
T Consensus 5 ~~~~~~v~fSG~~~~~----~~~~i~~lGg~v~~~~~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l~ 80 (220)
T 3l41_A 5 ASKRVYITFTGYDKKP----SIDNLKKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVD 80 (220)
T ss_dssp --CCEEEEECSCSSCC----CCGGGGGGTEEECSCTTTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCCC
T ss_pred ccceEEEEEeccCCCC----CcchHhhcceeeccCchhhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhccc
Confidence 3458999999998764 277899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCchhhhhcCCChhHHhhhccc--CCCCCCceEEEeCCC--CCCHHHHHHHHHhCCcEEEeccCccc-c-cCCC
Q 002240 798 EESYLLRDTKKEKEFGFSMPASLARARK--HPLLKDQRVLITPNI--KPSKETISSLIKSVHGQAVERLGRSA-L-KDDK 871 (948)
Q Consensus 798 Ee~YeL~D~e~Eke~gfsL~~SLarArk--~~LF~G~rFyIT~~v--kPskd~Lk~LIeaaGGkVVe~~prs~-l-KD~~ 871 (948)
|++|+|.|.+.|++|||+|..++.+++. .+||+|++|||++++ .|+.+.|++||+++||+|+. .|... . +...
T Consensus 81 e~~y~l~d~~~e~~~~~~l~~~~~rar~~~~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~-~p~~~~~~~~~~ 159 (220)
T 3l41_A 81 EEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCST-LNVYNKRLARHL 159 (220)
T ss_dssp SGGGBCCCHHHHHHHTSCHHHHHHHHHHHCSCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEE-ECSCCHHHHHHH
T ss_pred cCccccCCcHHHhhccccHHHHHHHHHhcCchhhhheeEEEeccccCCCCCceEEEEEecCCcEech-hhHHHHHHHHhc
Confidence 9999999999999999999999988875 899999999999998 88899999999999999998 44211 0 0001
Q ss_pred CCCceEEEecCCchhccHHHhhc-----CCeEechhHHHHHHhcCccCcccCccccc
Q 002240 872 LPDDLLILSCEEDYEICEPFLEK-----GAAVYSSELLLNGMVTQKLEYERHRLFVD 923 (948)
Q Consensus 872 ~pd~lIIISceeD~~~~~~llk~-----Gi~VVSsEWILdSIL~QkLE~E~y~Lf~d 923 (948)
.++.++||+|++|...|..|.+. ++.||++||||++|++|+|+|+++.+++.
T Consensus 160 ~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~~~~~~~~~~ 216 (220)
T 3l41_A 160 EDGNVVLITCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEIDVNDRIADEF 216 (220)
T ss_dssp HHCCEEEEECGGGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCCCTTCCBCGGG
T ss_pred ccCCEEEEEeCCcchHHHHhhccccccceEEEechhHHHHHHHHHHcCcchHHHHHH
Confidence 12458999999999999877653 34599999999999999999999988864
No 4
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.97 E-value=8e-31 Score=272.63 Aligned_cols=200 Identities=14% Similarity=0.165 Sum_probs=152.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEec--cC-CCceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCC
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVS--SI-TDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIH 795 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvd--di-sd~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~ 795 (948)
...++|+|||+.+++ .+.+.++|+.|||.++. ++ .+||||||+.+.||+|||+|||.|+|||+++||.+|+++|+|
T Consensus 7 ~~~~~~~~Sg~~~~~-~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~~ 85 (235)
T 3al2_A 7 KKQYIFQLSSLNPQE-RIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHF 85 (235)
T ss_dssp -CCCEEEEESCCHHH-HHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTSC
T ss_pred CCCEEEEEcCCCHHH-HHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCCC
Confidence 457999999998554 55789999999999986 35 489999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCchhhh---hcCCC---hhHHhhhcc-------c----CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEE
Q 002240 796 IDEESYLLRDTKKEK---EFGFS---MPASLARAR-------K----HPLLKDQRVLITPNIKPSKETISSLIKSVHGQA 858 (948)
Q Consensus 796 VDEe~YeL~D~e~Ek---e~gfs---L~~SLarAr-------k----~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkV 858 (948)
+||++|+|.+...+. .+++. |..+..++| . .+||.|++|||+++ .+..+.|++||+++||+|
T Consensus 86 l~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~~-~~~~~~l~~ii~agGg~v 164 (235)
T 3al2_A 86 VQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVD-QSREAGFKRLLQSGGAKV 164 (235)
T ss_dssp CCSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEECC-HHHHHHHHHHHHHTTCEE
T ss_pred CChhceeecCcchhccccCCChhhhHHHHHHHHHHHHHHhcccccccCCCCCCcEEEEecC-CCcHHHHHHHHHcCCcEE
Confidence 999999999876542 23322 333333222 1 58999999999986 355688999999999999
Q ss_pred EeccCcccccCCCCCCceEEEec---CCch-hccHHHhhcCCeEechhHHHHHHhcCcc-CcccCccccc
Q 002240 859 VERLGRSALKDDKLPDDLLILSC---EEDY-EICEPFLEKGAAVYSSELLLNGMVTQKL-EYERHRLFVD 923 (948)
Q Consensus 859 Ve~~prs~lKD~~~pd~lIIISc---eeD~-~~~~~llk~Gi~VVSsEWILdSIL~QkL-E~E~y~Lf~d 923 (948)
+...+.....+ ....+|... +++. ..+..+.+.|++||+.|||+++|++|++ +++.|.|...
T Consensus 165 l~~~~~~~~~~---~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~~~~~~~y~l~~~ 231 (235)
T 3al2_A 165 LPGHSVPLFKE---ATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVENYCLPEA 231 (235)
T ss_dssp CSSCCGGGGGG---CSEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSSCCCHHHHBCGGG
T ss_pred ecCCCCCcccc---CceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcCCCCChhheEcccc
Confidence 97654322221 112222211 1121 2455677889999999999999999987 9999988754
No 5
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.96 E-value=3.6e-29 Score=254.33 Aligned_cols=210 Identities=13% Similarity=0.162 Sum_probs=146.0
Q ss_pred hccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC-----CChHHHHHHHhCCCCeecHHHHHHH
Q 002240 716 RRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF-----VRTRNMLEAIASGKPVVTHLWLESI 789 (948)
Q Consensus 716 rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~-----~RT~KfL~AIA~GipIVSp~WLedC 789 (948)
.+.+.++.|+|||+.+.+ ...+.++++.+||.++.++. .|||||+... .||.|||+|++.|+|||+++||.+|
T Consensus 2 ~~~~~~~~i~~sg~~~~~-~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~ 80 (229)
T 1l0b_A 2 ERAERDISMVVSGLTPKE-VMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKS 80 (229)
T ss_dssp -CCCCCCEEEEESCCHHH-HHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHH
T ss_pred CCCCCCeEEEEcCCCHHH-HHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHH
Confidence 457889999999998655 56789999999999999986 7999999986 8999999999999999999999999
Q ss_pred HHhCCCCCCCCcccCCchhhhhcCCChhHHhhhcccCCCCCCceEEEeC-CCCCCHHHHHHHHHhCCcEEEeccCccccc
Q 002240 790 AQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITP-NIKPSKETISSLIKSVHGQAVERLGRSALK 868 (948)
Q Consensus 790 lkaGk~VDEe~YeL~D~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~-~vkPskd~Lk~LIeaaGGkVVe~~prs~lK 868 (948)
+++|+++||++|++.+...+.. ....+ ...+..+.+||.|+.|||.+ ...+.++.|++||+++||+|+...+.....
T Consensus 81 ~~~~~~~~e~~y~~~~~~~~~~-~~~~~-~~~r~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~ 158 (229)
T 1l0b_A 81 IQERKLLSVHEFEVKGDVVTGS-NHQGP-RRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRD 158 (229)
T ss_dssp HTTTSCCCSGGGBCCEETTTCS-SSCHH-HHHHHHC--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGC
T ss_pred HHCCCcCChHHeEecccccccc-ccccc-hhhhhhhhhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCccccccc
Confidence 9999999999999986432211 01111 12233346899999999976 455779999999999999999876542111
Q ss_pred CCCCCCceEEEecCC--chhccHHH-hhcCCeEechhHHHHHHhcCcc-CcccCcccccccccccc
Q 002240 869 DDKLPDDLLILSCEE--DYEICEPF-LEKGAAVYSSELLLNGMVTQKL-EYERHRLFVDNVKRTRS 930 (948)
Q Consensus 869 D~~~pd~lIIIScee--D~~~~~~l-lk~Gi~VVSsEWILdSIL~QkL-E~E~y~Lf~d~v~~trs 930 (948)
.....++|+.... +...+..+ ...+++||+++||++||..|++ +++.|.|......+.-|
T Consensus 159 --~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~~~~~~~~ 222 (229)
T 1l0b_A 159 --TGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLDAYLVQNITCGRDGS 222 (229)
T ss_dssp --CSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCGGGGBCC---------
T ss_pred --CCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCCccceEccccccccccC
Confidence 1112345554321 12223333 3468999999999999999875 89999998776444433
No 6
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.96 E-value=1e-28 Score=250.40 Aligned_cols=183 Identities=18% Similarity=0.229 Sum_probs=144.7
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCC-EEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCCCC
Q 002240 721 SIQVLFSHHLDEDIIKQQKKILDRLGA-SEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDE 798 (948)
Q Consensus 721 ~vrV~FSGf~dee~~k~LKKiIk~LGG-sVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~VDE 798 (948)
...|++||+.+++ .+.+.+++..||| .++.++. .|||||++...||.|||+||+.|+|||+++||.+|+++|+++||
T Consensus 11 ~~~~~~sgl~~~~-~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e 89 (199)
T 3u3z_A 11 TRTLVMTSMPSEK-QNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGHWISE 89 (199)
T ss_dssp CCEEEEESCCHHH-HHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTSCCCS
T ss_pred CeEEEEcCCCHHH-HHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCCCCh
Confidence 4678899997554 5678999999988 6778886 69999999999999999999999999999999999999999999
Q ss_pred CCcccCCchhhhhcCCChhHHh-hhcccCCCCCCce-EEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCce
Q 002240 799 ESYLLRDTKKEKEFGFSMPASL-ARARKHPLLKDQR-VLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDL 876 (948)
Q Consensus 799 e~YeL~D~e~Eke~gfsL~~SL-arArk~~LF~G~r-FyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~l 876 (948)
++|++.+...+... .++...+ ++....+||.|+. ||+++...|+++.|++||+++||+|+.....+ .
T Consensus 90 ~~y~~~~~~~~~~~-~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~~----------~ 158 (199)
T 3u3z_A 90 EPFELSHHFPAAPL-CRSECHLSAGPYRGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQA----------S 158 (199)
T ss_dssp GGGBCTTTCTHHHH-HHHHHHHCSSSCCCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGGC----------S
T ss_pred hhccccCCcccccc-chhhhhhhcccccchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCCC----------E
Confidence 99999986543321 1232221 1223468999995 88888888999999999999999998865321 2
Q ss_pred EEEecCCchhccHHHhhcCCeEechhHHHHHHhcCc-cCcccCccc
Q 002240 877 LILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQK-LEYERHRLF 921 (948)
Q Consensus 877 IIISceeD~~~~~~llk~Gi~VVSsEWILdSIL~Qk-LE~E~y~Lf 921 (948)
++|. +... ....+++||+++||+|||..++ ++++.|.+-
T Consensus 159 iiI~-~~~~-----~~~~~~~~V~p~Wi~DsI~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 159 IVIG-PYSG-----KKKATVKYLSEKWVLDSITQHKVCAPENYLLS 198 (199)
T ss_dssp EEES-CCCS-----CCCTTCEEECHHHHHHHHHHTSCCCGGGGBCC
T ss_pred EEEe-CCch-----hccCCCcEEChhHHHHHHHcCCcCChHhccCC
Confidence 4553 3221 1246899999999999999887 599999763
No 7
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.95 E-value=2e-27 Score=238.01 Aligned_cols=194 Identities=15% Similarity=0.161 Sum_probs=146.1
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC-----CChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 720 ASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF-----VRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 720 s~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~-----~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
.++.|++||+.+++ .+.+.++++.+||.++.++. .|||||+... .||.|||+|++.|+|||+++||.+|+++|
T Consensus 3 ~~~~~~~sg~~~~~-~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 3 KRMSMVVSGLTPEE-FMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp -CCEEEEESCCHHH-HHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CcEEEEECCCCHHH-HHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 47899999997554 56789999999999999986 7999999986 89999999999999999999999999999
Q ss_pred CCCCCCCcccCCchhhhhcCCChhHHhhhc---ccCCCCCCceEEEeCC-CCCCHHHHHHHHHhCCcEEEeccCcccccC
Q 002240 794 IHIDEESYLLRDTKKEKEFGFSMPASLARA---RKHPLLKDQRVLITPN-IKPSKETISSLIKSVHGQAVERLGRSALKD 869 (948)
Q Consensus 794 k~VDEe~YeL~D~e~Eke~gfsL~~SLarA---rk~~LF~G~rFyIT~~-vkPskd~Lk~LIeaaGGkVVe~~prs~lKD 869 (948)
+++||++|++.+...+. .......++ ...+||.|++|||.+. ..++++.|+.||+++||+|+...+....
T Consensus 82 ~~~~e~~y~~~~~~~~~----~~~~~~~~~r~~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~-- 155 (214)
T 1t15_A 82 KMLNEHDFEVRGDVVNG----RNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTL-- 155 (214)
T ss_dssp SCCCGGGGBCCEETTTB----TTCCHHHHHHTCTTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCC--
T ss_pred CcCChHHeEeecccccc----ccccchhhHhhcCCCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCcccccc--
Confidence 99999999998643221 111112222 2468999999999764 4567999999999999999987543211
Q ss_pred CCCCCceEEEecCCchh---ccHH-HhhcCCeEechhHHHHHHhcCcc-CcccCccc
Q 002240 870 DKLPDDLLILSCEEDYE---ICEP-FLEKGAAVYSSELLLNGMVTQKL-EYERHRLF 921 (948)
Q Consensus 870 ~~~pd~lIIISceeD~~---~~~~-llk~Gi~VVSsEWILdSIL~QkL-E~E~y~Lf 921 (948)
......+||..++... .... ....+++||+++||++||..|++ +++.|.|.
T Consensus 156 -~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 156 -GTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp -STTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGGGBCC
T ss_pred -CCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCcceeec
Confidence 1111223343322211 1111 23468999999999999999876 88999775
No 8
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.94 E-value=3.4e-26 Score=231.07 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=136.8
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC--CCChHHHHHHHhCCCCeecHHHHHHHHHhCCCCC
Q 002240 721 SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI--FVRTRNMLEAIASGKPVVTHLWLESIAQVKIHID 797 (948)
Q Consensus 721 ~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k--~~RT~KfL~AIA~GipIVSp~WLedClkaGk~VD 797 (948)
++.|++||+.+++ ...+.++++.|||.++.++. .|||||+.. ..||.|||+|++.|+|||+++||.+|+++|+++|
T Consensus 2 ~~vi~~sg~~~~~-~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~~ 80 (210)
T 2nte_A 2 PLVLIGSGLSSEQ-QKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQ 80 (210)
T ss_dssp CCEEEESSCCHHH-HHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSCCC
T ss_pred CEEEEECCCCHHH-HHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCcCC
Confidence 6889999998654 56789999999999999997 899999987 7999999999999999999999999999999999
Q ss_pred CCCcccCCchhhhhcCCChhHHhhhc-ccCCCCCCceEEEeCC-CCCCHHHHHHHHHhCCcEEEeccCccccc-------
Q 002240 798 EESYLLRDTKKEKEFGFSMPASLARA-RKHPLLKDQRVLITPN-IKPSKETISSLIKSVHGQAVERLGRSALK------- 868 (948)
Q Consensus 798 Ee~YeL~D~e~Eke~gfsL~~SLarA-rk~~LF~G~rFyIT~~-vkPskd~Lk~LIeaaGGkVVe~~prs~lK------- 868 (948)
|++|++.+... ...+.+. ...+||.|+.|||++. ..++++.|++||+++||+|+...|.....
T Consensus 81 e~~y~~~~~~~--------~~r~~~~~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~ 152 (210)
T 2nte_A 81 EEKYEIPEGPR--------RSRLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINT 152 (210)
T ss_dssp GGGTBCTTHHH--------HHHHHHHTTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCC
T ss_pred hhhccCCCCCh--------hhhhccccccccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccce
Confidence 99999986311 1112222 2368999999999874 45779999999999999999765532100
Q ss_pred ---------CCCCCCceEEEecCCchhccHH-HhhcCCeEechhHHHHHHhcCcc
Q 002240 869 ---------DDKLPDDLLILSCEEDYEICEP-FLEKGAAVYSSELLLNGMVTQKL 913 (948)
Q Consensus 869 ---------D~~~pd~lIIISceeD~~~~~~-llk~Gi~VVSsEWILdSIL~QkL 913 (948)
+..... .+||..+ ....... +...+++||+++||++||..++|
T Consensus 153 v~~~~~~~~~~~~~t-~~iv~~~-~~~~~~~~~~~~~v~~V~~~Wl~dcI~~~~l 205 (210)
T 2nte_A 153 VAYHARPDSDQRFCT-QYIIYED-LCNYHPERVRQGKVWKAPSSWFIDCVMSFEL 205 (210)
T ss_dssp CCTTSCTTCGGGTCC-EEEEECS-CSSCCCSCSEETTEEEEEHHHHHHHHHHTSC
T ss_pred eeeccCCCcccccce-EEEEecc-ccccCHHHHhccCcccccHHHHHHHHHhCee
Confidence 000001 2333222 1111011 12346799999999999999886
No 9
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.92 E-value=9.1e-25 Score=229.80 Aligned_cols=205 Identities=15% Similarity=0.179 Sum_probs=151.5
Q ss_pred ccCCCeEEEEcCCCCHH----------------------------HHHHHHHHHHHcCCEEeccCCC-------ceEEEe
Q 002240 717 RDMASIQVLFSHHLDED----------------------------IIKQQKKILDRLGASEVSSITD-------ATHFVT 761 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee----------------------------~~k~LKKiIk~LGGsVvddisd-------~THLVA 761 (948)
.-|.++.|++|+....+ ....++++|+.+||.|+.++.+ +||||+
T Consensus 14 ~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LIa 93 (259)
T 1kzy_C 14 TLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIA 93 (259)
T ss_dssp TTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEEE
T ss_pred cCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEEEc
Confidence 34889999999986432 2347899999999999998875 489999
Q ss_pred CCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCCCCCCcccCCchhhhhcCCChhHHhhhcccCCCCCCceEEEeCCCC
Q 002240 762 DIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIK 841 (948)
Q Consensus 762 ~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~VDEe~YeL~D~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~~vk 841 (948)
+...||.|||+|++.|+|||+++||.+|+++++++|+++|.|.+..... . ...+....+.+||+|++|||++...
T Consensus 94 ~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~~--~---~~~~~~~~~~~LF~G~~I~i~~~~~ 168 (259)
T 1kzy_C 94 DQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLE--E---QRILDWQPRENPFQNLKVLLVSDQQ 168 (259)
T ss_dssp SSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCEEETT--T---TEEECCCCCCCTTTTCEEEEEESCT
T ss_pred CCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCCcccc--c---chhhhccccCCCCCCeEEEEecCCC
Confidence 9999999999999999999999999999999999999999998632110 0 0011123347899999999998876
Q ss_pred C-CHHHHHHHHHhCCcEEEeccCcc-cccCC-CCCCceEEEecCCchhccHHHhhcCCeEechhHHHHHHhcCc-cCccc
Q 002240 842 P-SKETISSLIKSVHGQAVERLGRS-ALKDD-KLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQK-LEYER 917 (948)
Q Consensus 842 P-skd~Lk~LIeaaGGkVVe~~prs-~lKD~-~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILdSIL~Qk-LE~E~ 917 (948)
+ ..+.+..||+++||+++...... ..++. ..+.+++|+.............+.+++||+.|||++||+.|+ |+++.
T Consensus 169 ~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~EWv~~sI~~~~ll~~~~ 248 (259)
T 1kzy_C 169 QNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQ 248 (259)
T ss_dssp TTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECHHHHHHHHHHTSCCCTTS
T ss_pred CCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecHHHHHHHHHhCCcCCCCc
Confidence 5 46778899999999999775311 01111 012344554322112222334567899999999999999987 69999
Q ss_pred Ccccccccc
Q 002240 918 HRLFVDNVK 926 (948)
Q Consensus 918 y~Lf~d~v~ 926 (948)
|.=|..++.
T Consensus 249 hp~~~~~~~ 257 (259)
T 1kzy_C 249 HPKYKHDYV 257 (259)
T ss_dssp SGGGSTTCC
T ss_pred Ccccccccc
Confidence 988766553
No 10
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.89 E-value=2.3e-22 Score=215.72 Aligned_cols=210 Identities=11% Similarity=0.094 Sum_probs=170.0
Q ss_pred cccccchhhHHHHHhhcCCCCCCCccchhhhhccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC
Q 002240 685 KNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI 763 (948)
Q Consensus 685 r~L~rs~~~kEL~~L~~~~~ep~~~~K~sr~rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k 763 (948)
+++ ++..+..+.+ ...+++...++.++..|.++.|+|||+.++ ....+.++|..+||.+..++. ++||||++.
T Consensus 77 ~iv-~p~~v~~c~~----~~~~lp~~~~P~y~~~l~g~~~~~tG~~~~-~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~ 150 (298)
T 3olc_X 77 RIV-GPQVVIFCMH----HQRCVPRAEHPVYNMVMSDVTISCTSLEKE-KREEVHKYVQMMGGRVYRDLNVSVTHLIAGE 150 (298)
T ss_dssp EEE-CHHHHHHHHH----TTCCCCCCSSCBCCCTTTTCEEEEESCCHH-HHHHHHHHHHHTTCEECSSCCTTCCEEEESS
T ss_pred CEE-CHHHHHHHHH----hCCcCCCCCCcccccccCCeEEEeCCCcHH-hHHHHHHHHHHCCCEEecCcCCCeeEEEEeC
Confidence 455 8888888887 455676677888888999999999999765 467899999999999999997 899999997
Q ss_pred CCChHHHHHHHhCCCCeecHHHHHHHHHhCCCCCCCCcccCCchhhhhcCCChhHHhhhcccCCCCCCceEEEeCCCCCC
Q 002240 764 FVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPS 843 (948)
Q Consensus 764 ~~RT~KfL~AIA~GipIVSp~WLedClkaGk~VDEe~YeL~D~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~~vkPs 843 (948)
. +|.||..|+..|+|||+++||.+|++.+..++...|. +... .....++|.|+.|++++...+.
T Consensus 151 ~-~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~~~~~~~~--~~~~-------------~~~~~~~f~g~~i~~tG~~~~~ 214 (298)
T 3olc_X 151 V-GSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYT--DINM-------------EDFKCPIFLGCIICVTGLCGLD 214 (298)
T ss_dssp S-CSHHHHHHHHTTCCEECHHHHHHHHHHHHTTCCSSGG--GSCG-------------GGGBCCTTTTCEEEECSCCHHH
T ss_pred C-CChHHHHHHHCCCeEeeHHHHHHHHHcCCcCCccccc--cccc-------------ccccccccCCeEEEEeCCCCcc
Confidence 6 6999999999999999999999999999988766551 1100 1113579999999999988778
Q ss_pred HHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHHHHHhcCc-cCcccCcccc
Q 002240 844 KETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQK-LEYERHRLFV 922 (948)
Q Consensus 844 kd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILdSIL~Qk-LE~E~y~Lf~ 922 (948)
++.|+.+|+.+||+++..... ....+||+.+.+-..+..+.+.|++||+++||++||...+ ++.+.|.+-.
T Consensus 215 r~~l~~li~~~GG~~~~~ls~--------~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 215 RKEVQQLTVKHGGQYMGQLKM--------NECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTEP 286 (298)
T ss_dssp HHHHHHHHHHTTCEECSSCCT--------TTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGSBSCC
T ss_pred HHHHHHHHHHcCCEEeceecC--------CCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCchhcCCCC
Confidence 999999999999999876531 1235777776655566666778999999999999999864 6999998865
Q ss_pred cc
Q 002240 923 DN 924 (948)
Q Consensus 923 d~ 924 (948)
..
T Consensus 287 ~~ 288 (298)
T 3olc_X 287 RP 288 (298)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 11
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.85 E-value=7.6e-21 Score=198.30 Aligned_cols=184 Identities=18% Similarity=0.174 Sum_probs=134.6
Q ss_pred CCCeEEEEcCC--CCHHHHHHHHHHHHHcCCEEecc--------CC-------------------CceEEEeCCCCChHH
Q 002240 719 MASIQVLFSHH--LDEDIIKQQKKILDRLGASEVSS--------IT-------------------DATHFVTDIFVRTRN 769 (948)
Q Consensus 719 ms~vrV~FSGf--~dee~~k~LKKiIk~LGGsVvdd--------is-------------------d~THLVA~k~~RT~K 769 (948)
|.++.|+||+. .++....+++++|+..||.|.++ .. .+||||++...||.|
T Consensus 3 F~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~K 82 (241)
T 2vxb_A 3 FDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKVK 82 (241)
T ss_dssp TTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCHH
T ss_pred CCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcHH
Confidence 67899999998 43344567899999999999886 11 359999999999999
Q ss_pred HHHHHhCCCCeecHHHHHHHHHhCCCCCCCCcccCCchhhhhc--------CCChhHHhh--hcccCCCCCCceEEEeCC
Q 002240 770 MLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEF--------GFSMPASLA--RARKHPLLKDQRVLITPN 839 (948)
Q Consensus 770 fL~AIA~GipIVSp~WLedClkaGk~VDEe~YeL~D~e~Eke~--------gfsL~~SLa--rArk~~LF~G~rFyIT~~ 839 (948)
|++|++.|+|||+++||.+|+++++++|+.+|.|.+....... .|+....+. ...+..||.|++|||..+
T Consensus 83 ~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Lf~g~~i~~~~~ 162 (241)
T 2vxb_A 83 YLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKILFIIP 162 (241)
T ss_dssp HHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTTEEEECCCCCCCTTSCHHHHHHHCCCTTTTCEEEECCC
T ss_pred HHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCCcchhccchhhccccCCChhhHHHHHHhhcCcCCCCcEEEEEeC
Confidence 9999999999999999999999999999999999865443221 122211111 123468999999999765
Q ss_pred CCC-C------------HHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHHH
Q 002240 840 IKP-S------------KETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLN 906 (948)
Q Consensus 840 vkP-s------------kd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILd 906 (948)
... . .+.+..|++++||++ .+.+. +.+ .+.+ +|+.++... ..+.+++||++|||++
T Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~-~~v~~--~~~--~~~d-~v~~~~~~~-----~~~~~~~iV~~eWv~~ 231 (241)
T 2vxb_A 163 EAKSWQKKIENTEQGQKALAHVYHALALGADV-EIRPN--VAH--LECD-LILTMDGNI-----VDETNCPVVDPEWIVE 231 (241)
T ss_dssp C------------CHHHHHHHHHHHHHTTCEE-ECCSC--CSS--CCCS-EEECSSSCC-----CSSCSSCEECHHHHHH
T ss_pred CCcccccccccccccchHHHHHHHHHHcCCce-ecccc--ccc--CCcc-EEEECCccc-----cccCCCCEecHHHHHH
Confidence 322 1 378999999999999 54432 111 1223 333332211 3457899999999999
Q ss_pred HHhcCcc
Q 002240 907 GMVTQKL 913 (948)
Q Consensus 907 SIL~QkL 913 (948)
||+.|++
T Consensus 232 ~i~~g~~ 238 (241)
T 2vxb_A 232 CLISQSD 238 (241)
T ss_dssp HHHHTSC
T ss_pred HHHhcee
Confidence 9999875
No 12
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=99.77 E-value=1.2e-18 Score=182.87 Aligned_cols=191 Identities=9% Similarity=0.196 Sum_probs=146.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC---CCceEEEeCCCCChHHHHHHHhCCCC--eecHHHHHHHHHh--
Q 002240 720 ASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI---TDATHFVTDIFVRTRNMLEAIASGKP--VVTHLWLESIAQV-- 792 (948)
Q Consensus 720 s~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddi---sd~THLVA~k~~RT~KfL~AIA~Gip--IVSp~WLedClka-- 792 (948)
..+++++||+..++..+...+.|+.||+.|++++ ..|+||||++..||.|||+|+|+|.- ||+|+||.+|++.
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih 100 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIH 100 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC
T ss_pred eeEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhh
Confidence 5899999999822333445778999999999999 47999999999999999999999875 9999999999998
Q ss_pred -CC------CCCCCCcccCCchhhhhcCCChhHHhhhcccCCCCCCce---EEEeCCCCCCHHHHHHHHHhCCcEEEecc
Q 002240 793 -KI------HIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQR---VLITPNIKPSKETISSLIKSVHGQAVERL 862 (948)
Q Consensus 793 -Gk------~VDEe~YeL~D~e~Eke~gfsL~~SLarArk~~LF~G~r---FyIT~~vkPskd~Lk~LIeaaGGkVVe~~ 862 (948)
|. .++.++|.|.|...|. +. .++.+.+||+|+. |+++.++....+.+++|+++.||+=+...
T Consensus 101 ~~~~~~~~~~l~~~dY~L~d~~~E~-----l~---r~~~~gkLf~~~~I~ciNls~dI~GG~e~issIleahG~~~~~~l 172 (256)
T 3t7k_A 101 SKKDKLSQININLFDYEINGINESI-----IS---KTKLPTKVFERANIRCINLVNDIPGGVDTIGSVLKAHGIEKINVL 172 (256)
T ss_dssp -------CCCCCSSTTBCTTCCHHH-----HH---HTTSSSCHHHHTTCCEEEEETTCTTCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcccccccCChhhccCCCcchhH-----Hh---hhccccccccCCcceeeeeccCCCCCHHHHHHHHHHcCCceeeec
Confidence 77 8899999999987662 11 1334578999995 55599998889999999999999755443
Q ss_pred Cc--ccccC-----------CCCCCceEEEe-cCCchhccHHHhh-----cCCeEechhHHHHHHhcCccCcccCc
Q 002240 863 GR--SALKD-----------DKLPDDLLILS-CEEDYEICEPFLE-----KGAAVYSSELLLNGMVTQKLEYERHR 919 (948)
Q Consensus 863 pr--s~lKD-----------~~~pd~lIIIS-ceeD~~~~~~llk-----~Gi~VVSsEWILdSIL~QkLE~E~y~ 919 (948)
+. ....+ +..++ +++|+ ...+...+..+.. ..+-+|.++|.+.||+.++++|+...
T Consensus 173 ~~~~~~~~dl~~n~~~~~~~~~~~~-~ILia~K~~q~k~Fkk~~~~~~~n~~~lvveWdWCVksIF~levd~~d~~ 247 (256)
T 3t7k_A 173 RSKKCTFEDIIPNDVSKQENGGIFK-YVLIVTKASQVKKFTKLINDRDKNETILIVEWNWCVESIFHLNVDFTSKK 247 (256)
T ss_dssp CTTTCCGGGCCCCC--------CCS-EEEECSCHHHHHHHHHHHHHHSTTSCEEEECHHHHHHHHHTTSCCTTCCT
T ss_pred ccccccHHHhhhccccccccCCCCC-EEEEEccHHHHHHHHHHhhcccccceEEEEEcHHHHHHHhheeeccCCCc
Confidence 32 11111 12333 45554 4456666666653 35789999999999999999998764
No 13
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.59 E-value=2.1e-14 Score=151.34 Aligned_cols=192 Identities=9% Similarity=0.108 Sum_probs=129.4
Q ss_pred ccCCCeEEEE-cCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCC-CCeecHHHHHHHHHhC
Q 002240 717 RDMASIQVLF-SHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASG-KPVVTHLWLESIAQVK 793 (948)
Q Consensus 717 r~ms~vrV~F-SGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~G-ipIVSp~WLedClkaG 793 (948)
.-|.++.||+ +|.... ..+.++++|..+||.+..+.. .+||+|+++ +|.|+-.++..| ++||+|+||.+|++++
T Consensus 9 ~lF~G~~f~V~sg~~~~-~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~--~~~k~~~~~~~g~~~IV~p~Wv~Dci~~~ 85 (263)
T 3ii6_X 9 NIFEDVEFCVMSGTDSQ-PKPDLENRIAEFGGYIVQNPGPDTYCVIAGS--ENIRVKNIILSNKHDVVKPAWLLECFKTK 85 (263)
T ss_dssp CTTTTCEEEECCCC--C-CHHHHHHHHHHTTCEECSSCCTTEEEEECSS--CCHHHHHHHHSCSCCEECHHHHHHHHHHT
T ss_pred ccCCCeEEEEEcCCCCC-CHHHHHHHHHHcCCEEEecCCCCEEEEEeCC--CCHHHHHHHhcCCCCEeehHHHHHHHhcC
Confidence 3588999987 675433 345789999999999998776 456668875 469999999998 9999999999999999
Q ss_pred CCCCCCCcccCCc-h-h----h---hhcC--C----C---hhHHhhhc--------------------------ccCCCC
Q 002240 794 IHIDEESYLLRDT-K-K----E---KEFG--F----S---MPASLARA--------------------------RKHPLL 829 (948)
Q Consensus 794 k~VDEe~YeL~D~-e-~----E---ke~g--f----s---L~~SLarA--------------------------rk~~LF 829 (948)
.+||.++|.+-.. . . . ..|| | + |...|.+- ....||
T Consensus 86 ~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lF 165 (263)
T 3ii6_X 86 SFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMF 165 (263)
T ss_dssp SCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHHHHHHHHTCTTCGGGTT
T ss_pred CcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHHHHHHhhcccCCcchhh
Confidence 9999888754321 1 1 1 1222 0 0 11111110 013599
Q ss_pred CCceEEEeCC---------CCC-CHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch--hccHHHh---hc
Q 002240 830 KDQRVLITPN---------IKP-SKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY--EICEPFL---EK 894 (948)
Q Consensus 830 ~G~rFyIT~~---------vkP-skd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~--~~~~~ll---k~ 894 (948)
+|++|||... +.. ..+.++.+|..+||+++...... -++||..+.+. ..+..+. ..
T Consensus 166 ~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~---------vTHVVv~~~~~r~~~~~~~~~~~~~ 236 (263)
T 3ii6_X 166 RRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEG---------VSHVIIGEDHSRVADFKAFRRTFKR 236 (263)
T ss_dssp TTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTT---------CCEEEECSCCTTHHHHHHHHHTCSS
T ss_pred CCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCC---------ceEEEECCCCccHHHHHHHHhhcCC
Confidence 9999999532 111 23456899999999999875431 24666654321 1122222 24
Q ss_pred CCeEechhHHHHHHhcCc-cCcccCcc
Q 002240 895 GAAVYSSELLLNGMVTQK-LEYERHRL 920 (948)
Q Consensus 895 Gi~VVSsEWILdSIL~Qk-LE~E~y~L 920 (948)
++.||+++||.+||-..+ |+-+.|.|
T Consensus 237 ~~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 237 KFKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp CCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 689999999999999865 57777754
No 14
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.50 E-value=4.5e-14 Score=129.64 Aligned_cols=87 Identities=24% Similarity=0.278 Sum_probs=77.9
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC--CCChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI--FVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k--~~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
+-+.++.|+|||+.+. ....++++|..+||.+..+++ +|||||++. ..++.||..|...|+|||+++||.+|+++|
T Consensus 14 ~~l~g~~i~isg~~~~-~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~~~ 92 (107)
T 3l3e_A 14 KPLHKVVVCVSKKLSK-KQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQEC 92 (107)
T ss_dssp CTTTTCEEEECGGGGG-GHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHHHT
T ss_pred CCCCCeEEEEeCCChH-hHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHHhC
Confidence 4588999999999864 456789999999999999996 799999953 356899999999999999999999999999
Q ss_pred CCCCCCCcccC
Q 002240 794 IHIDEESYLLR 804 (948)
Q Consensus 794 k~VDEe~YeL~ 804 (948)
+++||.+|.+.
T Consensus 93 ~~l~e~~Y~~~ 103 (107)
T 3l3e_A 93 KHLPESLYPHT 103 (107)
T ss_dssp SCCCGGGCCTT
T ss_pred CCCchhhCCCC
Confidence 99999999865
No 15
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.46 E-value=6e-15 Score=153.80 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=109.1
Q ss_pred cCCCeEEEE-cCCCCH-----HHHHHHHHHHHHcCCEEeccCC--C----ceEEEeCCCCChHHHHHHHhCCCCeecHHH
Q 002240 718 DMASIQVLF-SHHLDE-----DIIKQQKKILDRLGASEVSSIT--D----ATHFVTDIFVRTRNMLEAIASGKPVVTHLW 785 (948)
Q Consensus 718 ~ms~vrV~F-SGf~de-----e~~k~LKKiIk~LGGsVvddis--d----~THLVA~k~~RT~KfL~AIA~GipIVSp~W 785 (948)
-|.++.|++ +|..+. .....++++|+.+||.++.... . .||+|+++ .|.|+-.++..|++||+|+|
T Consensus 5 lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~--~t~k~~~~~~~~~~vV~p~W 82 (264)
T 1z56_C 5 IFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK--TTTECKALIDRGYDILHPNW 82 (264)
T ss_dssp CCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS--CCGGGGGGTTTTCCCBCSST
T ss_pred cCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC--CcHHHHHHHhCCCCEEechH
Confidence 377888865 664211 1234578899999998765432 1 47899985 57888888888999999999
Q ss_pred HHHHHHhCCCCCCCCcccCCchh---------hhhcCC------C---hhHHhhhc-----------------ccCCCCC
Q 002240 786 LESIAQVKIHIDEESYLLRDTKK---------EKEFGF------S---MPASLARA-----------------RKHPLLK 830 (948)
Q Consensus 786 LedClkaGk~VDEe~YeL~D~e~---------Eke~gf------s---L~~SLarA-----------------rk~~LF~ 830 (948)
|.+|+++|++++.++|.+-.... ...||- + |...+... ....||.
T Consensus 83 v~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~lF~ 162 (264)
T 1z56_C 83 VLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFS 162 (264)
T ss_dssp THHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCCSCCCCCCC---
T ss_pred HHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhhhhhhcccccCchhhhC
Confidence 99999999999999985431110 011110 0 11111110 2246999
Q ss_pred CceEEEeCCC-CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCc--hhc-cHHHh---h-c--------
Q 002240 831 DQRVLITPNI-KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEED--YEI-CEPFL---E-K-------- 894 (948)
Q Consensus 831 G~rFyIT~~v-kPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD--~~~-~~~ll---k-~-------- 894 (948)
|++|||.+.. ....+.|+.+|.++||+++..... ...+||..+.+ ... ...+. . .
T Consensus 163 g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~---------~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (264)
T 1z56_C 163 NRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSL---------CNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIP 233 (264)
T ss_dssp -----------------CHHHHHHHTTSCCCCSSS---------CSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCC
T ss_pred CeEEEEecCCCchhHHHHHHHHHHcCCEEecccCC---------CEEEEEeCCCccchHHHHHHHHHHHHhhcccccccC
Confidence 9999998753 233566789999999999865432 12455544322 111 11121 1 1
Q ss_pred C-CeEechhHHHHHHhcCcc-CcccCcc
Q 002240 895 G-AAVYSSELLLNGMVTQKL-EYERHRL 920 (948)
Q Consensus 895 G-i~VVSsEWILdSIL~QkL-E~E~y~L 920 (948)
+ ..||+++||.+||-.+++ +-+.|.+
T Consensus 234 ~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 234 KIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp CCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred CCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 3 389999999999998764 7777754
No 16
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=129.79 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=79.4
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCC
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIH 795 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~ 795 (948)
+-|.++.|+|||+...+ ...++++|..+||.+..++. .+||||+... ++.||..|+..|+|||+++||.+|++++++
T Consensus 21 ~~f~g~~i~itG~~~~~-r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~-~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~~ 98 (129)
T 2d8m_A 21 KILQGVVVVLSGFQNPF-RSELRDKALELGAKYRPDWTRDSTHLICAFA-NTPKYSQVLGLGGRIVRKEWVLDCHRMRRR 98 (129)
T ss_dssp TTSTTEEEEEESCCTTH-HHHHHHHHHHTTEEEESSCCTTCCEEEESSS-SCHHHHHHHHHTCEEEETHHHHHHHHTTSC
T ss_pred ccCCCeEEEEeCCCcHH-HHHHHHHHHHcCCEEeCCcCCCCeEEEecCC-CChHHHHHHHCCCcEecHHHHHHHHHhCCc
Confidence 34889999999998544 46789999999999999987 7999999954 699999999999999999999999999999
Q ss_pred CCCCCcccCCc
Q 002240 796 IDEESYLLRDT 806 (948)
Q Consensus 796 VDEe~YeL~D~ 806 (948)
+||.+|.+...
T Consensus 99 l~e~~Y~l~~~ 109 (129)
T 2d8m_A 99 LPSQRYLMAGP 109 (129)
T ss_dssp CCGGGGBCSSS
T ss_pred CChHhcccCCC
Confidence 99999998764
No 17
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.43 E-value=5.1e-14 Score=132.39 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=77.4
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCC
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHI 796 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~V 796 (948)
-|.+++||||||.+.+ .++++++|..+||.+...+. +|||||+.... +.||.+|...|++||+++||.+|++.|..+
T Consensus 21 ~F~g~~Ic~sGf~~~e-r~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~-~~K~~~A~~~~i~IVs~eWl~dsi~~g~~l 98 (112)
T 3l46_A 21 PFQDCILSFLGFSDEE-KTNMEEMTEMQGGKYLPLGDERCTHLVVEENI-VKDLPFEPSKKLYVVKQEWFWGSIQMDARA 98 (112)
T ss_dssp TTTTCEECEESCCHHH-HHHHHHHHHHTTCEECCTTCTTCSEEEECTTT-BSSCSSCCCSSCEEEEHHHHHHHHHHTSCC
T ss_pred ccCCeEEEEeCCCHHH-HHHHHHHHHHcCCEECcccCCCceEEEecCCc-hhhHHHHHHCCeeEecHHHHHHHHHcCCcc
Confidence 5889999999998655 67899999999999998776 89999999754 558889999999999999999999999999
Q ss_pred CCCCcccCCc
Q 002240 797 DEESYLLRDT 806 (948)
Q Consensus 797 DEe~YeL~D~ 806 (948)
||..|.+...
T Consensus 99 dE~~Y~~~~~ 108 (112)
T 3l46_A 99 GETMYLYEKA 108 (112)
T ss_dssp CGGGSBCCC-
T ss_pred ChhhceeccC
Confidence 9999998653
No 18
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.39 E-value=8.3e-14 Score=129.21 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=77.9
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCC
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIH 795 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~ 795 (948)
.-|.+++|+||||.+.+ ...++++|..+||.+...+. .|||||++... +.||..|...|++||+++||.+|++.|..
T Consensus 11 ~~F~g~~i~~sg~~~~~-r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~-~~K~~~a~~~~i~IV~~~Wl~dsi~~g~~ 88 (109)
T 2cou_A 11 PPFQDCILSFLGFSDEE-KHSMEEMTEMQGGSYLPVGDERCTHLIVEENT-VKDLPFEPSKKLFVVKQEWFWGSIQMDAR 88 (109)
T ss_dssp CTTTTCBEEEESSCHHH-HHHHHHHHHHHTCBCCCTTCTTCSEEEECTTT-CSSCSSCCCTTSEEECHHHHHHHHHTTSC
T ss_pred CcCCCeEEEecCCCHHH-HHHHHHHHHHcCCEEecccCCCccEEEEeCCc-cHHHHHHHHCCCeEecHHHHHHHHHcCCc
Confidence 35889999999998655 56789999999999988776 89999998653 67888999999999999999999999999
Q ss_pred CCCCCcccCCc
Q 002240 796 IDEESYLLRDT 806 (948)
Q Consensus 796 VDEe~YeL~D~ 806 (948)
+||..|.+.+.
T Consensus 89 ldE~~Y~~~~~ 99 (109)
T 2cou_A 89 AGETMYLYEKA 99 (109)
T ss_dssp CCGGGTBCCCC
T ss_pred CChhccCCCCC
Confidence 99999998763
No 19
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=2.2e-12 Score=113.76 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=69.9
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC---CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCC
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT---DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis---d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk 794 (948)
-|.++.|+|+|+.... ...++++|..+||.+...+. .+||||+.... +.|+.. +.|++||+++||.+|+++|+
T Consensus 7 ~f~g~~~~i~g~~~~~-~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~-~~K~~~--~~~~~iV~~~Wi~dci~~~~ 82 (92)
T 4id3_A 7 IFKNCVIYINGYTKPG-RLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLP-LKKRIE--FANYKVVSPDWIVDSVKEAR 82 (92)
T ss_dssp TTTTCEEEECSCCSSC-HHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCC-HHHHHH--TTTSCEECTHHHHHHHHHTS
T ss_pred ccCCEEEEEeCCCCcC-HHHHHHHHHHCCCEEEEEecCCCceEEEEecCCC-HHHHHH--cCCCCEEcccHHHHHHHcCC
Confidence 4789999999975443 45789999999999999885 79999998754 566543 48999999999999999999
Q ss_pred CCCCCCccc
Q 002240 795 HIDEESYLL 803 (948)
Q Consensus 795 ~VDEe~YeL 803 (948)
++||++|.|
T Consensus 83 ~l~e~~Y~l 91 (92)
T 4id3_A 83 LLPWQNYSL 91 (92)
T ss_dssp CCCGGGGBC
T ss_pred cCChhhccc
Confidence 999999976
No 20
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.29 E-value=3.8e-12 Score=114.21 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=70.2
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC--CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCC
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT--DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis--d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk 794 (948)
.-|.++.|+++|+...+ ...++++|..+||.+...+. .+||||++... +.|+..+ .+++||+|+||.+|+++|+
T Consensus 11 ~lF~g~~~~isg~~~~~-~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~-~~k~~~~--~~~~iV~p~Wl~dci~~~~ 86 (97)
T 2ebw_A 11 TIFSGVAIYVNGYTDPS-AEELRKLMMLHGGQYHVYYSRSKTTHIIATNLP-NAKIKEL--KGEKVIRPEWIVESIKAGR 86 (97)
T ss_dssp CTTTTCEEEECSSCSSC-HHHHHHHHHHTTCEECSSCCSSSCCEEECSCCC-TTHHHHT--SSSCCBCTHHHHHHHHHTS
T ss_pred CCCCCeEEEEeCCCccc-HHHHHHHHHHcCCEEeeecCCCCCEEEEecCCC-hHHHHHh--cCCCEeChHHHHHHHHcCC
Confidence 34889999999986544 46789999999999887653 79999999763 5677554 3999999999999999999
Q ss_pred CCCCCCccc
Q 002240 795 HIDEESYLL 803 (948)
Q Consensus 795 ~VDEe~YeL 803 (948)
++|+++|.+
T Consensus 87 ~l~~~~Y~l 95 (97)
T 2ebw_A 87 LLSYIPYQL 95 (97)
T ss_dssp CCCSGGGBS
T ss_pred ccCchHcEe
Confidence 999999976
No 21
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.24 E-value=2.7e-11 Score=115.57 Aligned_cols=87 Identities=14% Similarity=0.238 Sum_probs=72.0
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHH-hCCCCeecHHHHHHHHHhCCC
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAI-ASGKPVVTHLWLESIAQVKIH 795 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AI-A~GipIVSp~WLedClkaGk~ 795 (948)
-|.+++|+|+|+.... ...++.+|+.+||.++..+. .|||||++....+++-+.+. ..+++||+++||.+|+++|++
T Consensus 40 lF~g~~i~i~G~~~~~-~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~~~~~~~~iV~~~Wv~dsi~~~~l 118 (132)
T 1wf6_A 40 LLDGCRIYLCGFSGRK-LDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLECFSKGYM 118 (132)
T ss_dssp TTTTCEEEEESCCSHH-HHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHHHSCCCCCEEEHHHHHHHHHHSSC
T ss_pred ccCCEEEEEECCChHH-HHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHHhhCCCCeEechHHHHHHHHcCCc
Confidence 4889999999997654 56789999999999999886 79999998754444433222 368999999999999999999
Q ss_pred CCCCCcccCC
Q 002240 796 IDEESYLLRD 805 (948)
Q Consensus 796 VDEe~YeL~D 805 (948)
+||+.|.+.+
T Consensus 119 l~e~~Y~~~~ 128 (132)
T 1wf6_A 119 LSEEPYIHSG 128 (132)
T ss_dssp CCSGGGBCCC
T ss_pred CCHhhccCCC
Confidence 9999998765
No 22
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.13 E-value=7.9e-11 Score=109.77 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=73.5
Q ss_pred cCCCeEEEEcCCCC---HHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 718 DMASIQVLFSHHLD---EDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 718 ~ms~vrV~FSGf~d---ee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
-|.++.|+|..... +...+.+..++..|||.++..+. .+||||+.... +.+|-.|...|++||+++||.+|+++|
T Consensus 7 ~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~-~~~~~~A~~~~i~iV~~~Wv~~C~~~~ 85 (107)
T 3pa6_A 7 ILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGY-QSTWDKAQKRGVKLVSVLWVEKCRTAG 85 (107)
T ss_dssp TTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCC-HHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred ccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCC-ChHHHHHhcCCCEEECHHHHHHHHHhC
Confidence 37789999966541 11234578899999999999998 79999997653 677888999999999999999999999
Q ss_pred CCCCCCCcccCCc
Q 002240 794 IHIDEESYLLRDT 806 (948)
Q Consensus 794 k~VDEe~YeL~D~ 806 (948)
+.+||++|.+.++
T Consensus 86 ~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 86 AHIDESLFPAANM 98 (107)
T ss_dssp SCCCGGGSBCCCT
T ss_pred ccCChhcccCCCC
Confidence 9999999998764
No 23
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.13 E-value=6.2e-11 Score=131.27 Aligned_cols=88 Identities=24% Similarity=0.329 Sum_probs=76.8
Q ss_pred hhccCCCeEEEEcCCCCHH---HHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhC-CCCeecHHHHHHH
Q 002240 715 KRRDMASIQVLFSHHLDED---IIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIAS-GKPVVTHLWLESI 789 (948)
Q Consensus 715 ~rr~ms~vrV~FSGf~dee---~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~-GipIVSp~WLedC 789 (948)
+.+-+.+++|+|||+.+.. ....+++++..|||.++.+++ .+||||+... .|.|+..|... |++||+++||.+|
T Consensus 279 k~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~-~t~K~~~A~~~~~I~IV~~~Wl~~c 357 (372)
T 3ef0_A 279 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKI-RTEKVKKAVSMGNIKVVKLNWLTES 357 (372)
T ss_dssp HTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSC-CCHHHHHHHHSSSCCEEEHHHHHHH
T ss_pred HhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCC-CchHHHHHHhcCCCEEEcHHHHHHH
Confidence 3456899999999997431 123578899999999999998 8999999865 69999999998 8999999999999
Q ss_pred HHhCCCCCCCCccc
Q 002240 790 AQVKIHIDEESYLL 803 (948)
Q Consensus 790 lkaGk~VDEe~YeL 803 (948)
+++++.+||..|.|
T Consensus 358 ~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 358 LSQWKRLPESDYLL 371 (372)
T ss_dssp HHTTSCCCGGGGBC
T ss_pred HHhCCcCChhhcee
Confidence 99999999999976
No 24
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.12 E-value=5.1e-11 Score=134.53 Aligned_cols=89 Identities=24% Similarity=0.319 Sum_probs=77.5
Q ss_pred hhhccCCCeEEEEcCCCCHH---HHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhC-CCCeecHHHHHH
Q 002240 714 RKRRDMASIQVLFSHHLDED---IIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIAS-GKPVVTHLWLES 788 (948)
Q Consensus 714 r~rr~ms~vrV~FSGf~dee---~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~-GipIVSp~WLed 788 (948)
.+++-+.+++|||||+.+.. ....++.++..|||.++.++. .|||||+... +|.||..|... |++||+++||.+
T Consensus 348 ~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~-~t~K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 348 MKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKI-RTEKVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp HHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSC-CCHHHHHHHHHSSSEEEEHHHHHH
T ss_pred HhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCC-CCHHHHHHHhcCCCEEEeHHHHHH
Confidence 34567999999999987432 123578899999999999997 8999999965 69999999998 599999999999
Q ss_pred HHHhCCCCCCCCccc
Q 002240 789 IAQVKIHIDEESYLL 803 (948)
Q Consensus 789 ClkaGk~VDEe~YeL 803 (948)
|+..++.+||..|.|
T Consensus 427 cl~~~krldE~~YlL 441 (442)
T 3ef1_A 427 SLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHTSCCCGGGTBC
T ss_pred HHHcCCcCChhcccc
Confidence 999999999999976
No 25
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.12 E-value=1.5e-10 Score=124.45 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=79.9
Q ss_pred hccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC--CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 716 RRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT--DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 716 rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis--d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
..-+.++.|+|||+.+.+ ...++.+|..+||.++.++. .|||||+... .+.||..|...|+|||+++||.+|++.|
T Consensus 197 ~~~f~g~~i~~tG~~~~~-r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~-~g~K~~~A~~~gi~IV~~~Wl~dsi~~g 274 (298)
T 3olc_X 197 CPIFLGCIICVTGLCGLD-RKEVQQLTVKHGGQYMGQLKMNECTHLIVQEP-KGQKYECAKRWNVHCVTTQWFFDSIEKG 274 (298)
T ss_dssp CCTTTTCEEEECSCCHHH-HHHHHHHHHHTTCEECSSCCTTTCCEEECSSS-CSHHHHHHHHTTCEEECHHHHHHHHHHT
T ss_pred ccccCCeEEEEeCCCCcc-HHHHHHHHHHcCCEEeceecCCCceEEEEeCC-CchHHHHHHHCCCeEEeHHHHHHHHHCC
Confidence 356889999999998654 56799999999999999887 6999999976 4899999999999999999999999999
Q ss_pred CCCCCCCcccCCc
Q 002240 794 IHIDEESYLLRDT 806 (948)
Q Consensus 794 k~VDEe~YeL~D~ 806 (948)
..+||++|.+...
T Consensus 275 ~~lde~~Y~l~~~ 287 (298)
T 3olc_X 275 FCQDESIYKTEPR 287 (298)
T ss_dssp SCCCGGGSBSCC-
T ss_pred CCCCchhcCCCCC
Confidence 9999999998764
No 26
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=98.98 E-value=1.4e-09 Score=101.26 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHh--CCCCeecHHHHHHHHHhCCC
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIA--SGKPVVTHLWLESIAQVKIH 795 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA--~GipIVSp~WLedClkaGk~ 795 (948)
|.+++|+|++..+....+.+.+.|..+||.+.+..+ ++||+|++.. .+.+|..|.. -++.+|+|+||.+|++++++
T Consensus 8 F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~-~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~kl 86 (104)
T 3pc6_A 8 FEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQE-WDPNFEEALMENPSLAFVRPRWIYSCNEKQKL 86 (104)
T ss_dssp TTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSC-CCHHHHHHHTTCTTCEEECHHHHHHHHHHTSC
T ss_pred hCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCC-CChhHHHHhhhCCCCeEEccHHHHHHHhcCcc
Confidence 789999999988433456789999999999988775 7999999986 4788887774 46899999999999999999
Q ss_pred CCCCCcccCC
Q 002240 796 IDEESYLLRD 805 (948)
Q Consensus 796 VDEe~YeL~D 805 (948)
+++++|.+..
T Consensus 87 vp~~~y~~~~ 96 (104)
T 3pc6_A 87 LPHQLYGVVP 96 (104)
T ss_dssp CCGGGGBCCC
T ss_pred CCcccceecc
Confidence 9999998753
No 27
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=98.85 E-value=5.8e-09 Score=93.50 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=68.3
Q ss_pred cCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHH
Q 002240 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELL 904 (948)
Q Consensus 825 k~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWI 904 (948)
..++|+|+.|||++...+++..|+.+|+.+||+++..... ....+||+...+...+..+. +++||+++||
T Consensus 9 ~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~--------~~~THlI~~~~~~~k~~~~~--~~~iV~p~Wl 78 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSR--------SKTTHIIATNLPNAKIKELK--GEKVIRPEWI 78 (97)
T ss_dssp CCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCS--------SSCCEEECSCCCTTHHHHTS--SSCCBCTHHH
T ss_pred CCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCC--------CCCEEEEecCCChHHHHHhc--CCCEeChHHH
Confidence 3579999999999888888999999999999998764321 12357777655433333332 8999999999
Q ss_pred HHHHhcCc-cCcccCcccc
Q 002240 905 LNGMVTQK-LEYERHRLFV 922 (948)
Q Consensus 905 LdSIL~Qk-LE~E~y~Lf~ 922 (948)
++||-.++ |+++.|.||.
T Consensus 79 ~dci~~~~~l~~~~Y~l~~ 97 (97)
T 2ebw_A 79 VESIKAGRLLSYIPYQLYT 97 (97)
T ss_dssp HHHHHHTSCCCSGGGBSCC
T ss_pred HHHHHcCCccCchHcEecC
Confidence 99999876 5999999874
No 28
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=98.79 E-value=1.6e-08 Score=89.05 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=65.7
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
..+|+|+.|||++...+++..|+.+|+.+||+++...... +...+||+.......... ..+++||+++||+
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~-------~~~THlI~~~~~~~K~~~--~~~~~iV~~~Wi~ 75 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSK-------KTVTHIVASNLPLKKRIE--FANYKVVSPDWIV 75 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCT-------TTCCEEECSCCCHHHHHH--TTTSCEECTHHHH
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCC-------CceEEEEecCCCHHHHHH--cCCCCEEcccHHH
Confidence 4799999999999777889999999999999998765310 123577776654433221 2589999999999
Q ss_pred HHHhcCc-cCcccCcc
Q 002240 906 NGMVTQK-LEYERHRL 920 (948)
Q Consensus 906 dSIL~Qk-LE~E~y~L 920 (948)
+||-.++ |+.+.|.|
T Consensus 76 dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 76 DSVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHHTSCCCGGGGBC
T ss_pred HHHHcCCcCChhhccc
Confidence 9999865 58888875
No 29
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=98.71 E-value=6.3e-08 Score=105.28 Aligned_cols=174 Identities=15% Similarity=0.129 Sum_probs=103.2
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC-C-CceEEEeCC---CCChHHHHHHHhCCCCeecHHHHHHHHHhC--
Q 002240 721 SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI-T-DATHFVTDI---FVRTRNMLEAIASGKPVVTHLWLESIAQVK-- 793 (948)
Q Consensus 721 ~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddi-s-d~THLVA~k---~~RT~KfL~AIA~GipIVSp~WLedClkaG-- 793 (948)
.+.++||. .+...++...+..|||.++ ++ . +||||||.+ .+-|.|.|+|+..|+|||+++||.+....-
T Consensus 115 P~Vl~~Ss---ke~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~e~~ 190 (325)
T 3huf_A 115 SMCIQFDN---PEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTVKES 190 (325)
T ss_dssp CCCEEESC---HHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTCTTC
T ss_pred eeEEEecC---HHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHhhhh
Confidence 45666743 2334568889999999999 77 3 699999974 445899999999999999999999976532
Q ss_pred ------CCCCCCCcccCC-chhhhhcCCChhHHhhhcccCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcc-
Q 002240 794 ------IHIDEESYLLRD-TKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRS- 865 (948)
Q Consensus 794 ------k~VDEe~YeL~D-~e~Eke~gfsL~~SLarArk~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs- 865 (948)
.|.++.+|...- ...|. -..-++.+ .+-|.|+++++.... -++..|+++.|=++..-..--
T Consensus 191 ~~~~~~~wPdp~dflP~i~~g~Ep--~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 259 (325)
T 3huf_A 191 VIEDASLMPDALECFKNIIKNNDQ--FPSSPEDC-----INSLEGFSCAMLNTS----SESHHLLELLGLRISTFMSLGD 259 (325)
T ss_dssp CCCTTSSHHHHHHHHHHHHTTCTT--CCSCHHHH-----TTTTTTCEEEEETCC----HHHHHHHHHTTCEEEEEC----
T ss_pred hhhcccCCCChHHcCCCCCCCCCC--CCCCHHHh-----hcccCceEEEEEcCc----hhhhHHHHHhcceeeeeeeccc
Confidence 122223332210 00010 00001111 468999998887654 678999999999987653210
Q ss_pred cccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHHHHHhc
Q 002240 866 ALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVT 910 (948)
Q Consensus 866 ~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILdSIL~ 910 (948)
+.++--...+ +|+....-++.-+--...|+.|++.|-+|.-|+.
T Consensus 260 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (325)
T 3huf_A 260 IDKELISKTD-FVVLNNAVYDSEKISFPEGIFCLTIEQLWKIIIE 303 (325)
T ss_dssp --CCSSSSCS-EEEEC-------------CCCEEEHHHHHHHHHS
T ss_pred chHhhhcccc-EEEEcccccccccccCCcceEEEEHHHHHHHHhh
Confidence 1111111123 3333332222111112469999999999987773
No 30
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=6.3e-08 Score=92.03 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=76.9
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
..+|.|+.|+|++...+.+..|+.+|+..||+|...... ...+||+.......+..+.+.|++||+.+||+
T Consensus 20 ~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~---------~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~ 90 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTR---------DSTHLICAFANTPKYSQVLGLGGRIVRKEWVL 90 (129)
T ss_dssp TTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCT---------TCCEEEESSSSCHHHHHHHHHTCEEEETHHHH
T ss_pred cccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCC---------CCeEEEecCCCChHHHHHHHCCCcEecHHHHH
Confidence 468999999999998778999999999999999876432 23577776554455556667899999999999
Q ss_pred HHHhcCc-cCcccCcccccccccccc
Q 002240 906 NGMVTQK-LEYERHRLFVDNVKRTRS 930 (948)
Q Consensus 906 dSIL~Qk-LE~E~y~Lf~d~v~~trs 930 (948)
+||-..+ |+++.|.|..+......+
T Consensus 91 d~~~~~~~l~e~~Y~l~~~~~~~~~~ 116 (129)
T 2d8m_A 91 DCHRMRRRLPSQRYLMAGPGSSSEED 116 (129)
T ss_dssp HHHHTTSCCCGGGGBCSSSSCCSCCC
T ss_pred HHHHhCCcCChHhcccCCCCcCCCCc
Confidence 9999765 699999998876655544
No 31
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=98.54 E-value=6.3e-08 Score=91.13 Aligned_cols=87 Identities=9% Similarity=-0.081 Sum_probs=69.0
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
-++|.|++||+++.....+..|+.+|+..||++...... .-++||+.+.+...+....+.+++||+.|||+
T Consensus 19 ~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~---------~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~ 89 (112)
T 3l46_A 19 VPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDE---------RCTHLVVEENIVKDLPFEPSKKLYVVKQEWFW 89 (112)
T ss_dssp CCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCT---------TCSEEEECTTTBSSCSSCCCSSCEEEEHHHHH
T ss_pred CCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCC---------CceEEEecCCchhhHHHHHHCCeeEecHHHHH
Confidence 479999999999987667889999999999999875421 23577776655544555557899999999999
Q ss_pred HHHhcCc-cCcccCccc
Q 002240 906 NGMVTQK-LEYERHRLF 921 (948)
Q Consensus 906 dSIL~Qk-LE~E~y~Lf 921 (948)
+||-+.. ++-..|.+-
T Consensus 90 dsi~~g~~ldE~~Y~~~ 106 (112)
T 3l46_A 90 GSIQMDARAGETMYLYE 106 (112)
T ss_dssp HHHHHTSCCCGGGSBCC
T ss_pred HHHHcCCccChhhceec
Confidence 9999864 688888774
No 32
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.46 E-value=9.1e-08 Score=88.68 Aligned_cols=88 Identities=9% Similarity=-0.071 Sum_probs=69.0
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
.++|.|+.||+++.....+..|..+|+..||++..... +...+||+.+.....+....+.+++||+.+||+
T Consensus 10 ~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~---------~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~ 80 (109)
T 2cou_A 10 VPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGD---------ERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFW 80 (109)
T ss_dssp CCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTC---------TTCSEEEECTTTCSSCSSCCCTTSEEECHHHHH
T ss_pred CCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccC---------CCccEEEEeCCccHHHHHHHHCCCeEecHHHHH
Confidence 57999999999997766789999999999999876432 223577776555444455556799999999999
Q ss_pred HHHhcCc-cCcccCcccc
Q 002240 906 NGMVTQK-LEYERHRLFV 922 (948)
Q Consensus 906 dSIL~Qk-LE~E~y~Lf~ 922 (948)
+||-... ++...|.+..
T Consensus 81 dsi~~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 81 GSIQMDARAGETMYLYEK 98 (109)
T ss_dssp HHHHTTSCCCGGGTBCCC
T ss_pred HHHHcCCcCChhccCCCC
Confidence 9999865 6888887653
No 33
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.44 E-value=6.5e-08 Score=89.80 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=53.6
Q ss_pred HHHHHHHcCCEEeccCC-CceEEEeCC---CCChHHHHHH--HhCCCCeecHHHHHHHHHhCCCCCCCCcccC
Q 002240 738 QKKILDRLGASEVSSIT-DATHFVTDI---FVRTRNMLEA--IASGKPVVTHLWLESIAQVKIHIDEESYLLR 804 (948)
Q Consensus 738 LKKiIk~LGGsVvddis-d~THLVA~k---~~RT~KfL~A--IA~GipIVSp~WLedClkaGk~VDEe~YeL~ 804 (948)
..+.++.+||.+++++. .+||+|++. ..+.++.|.+ +..++.||+++||.+|++++.++||+.|.+.
T Consensus 32 ~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 32 FEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHHHHHHHTCSCCCGGGTBCS
T ss_pred HHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchHHHHHhcCcccCccccccc
Confidence 45578889999999986 799999974 3345555653 3345679999999999999999999999653
No 34
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=98.43 E-value=5e-07 Score=82.80 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=68.5
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCC---chhccHHHhhcCCeEechh
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE---DYEICEPFLEKGAAVYSSE 902 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIIScee---D~~~~~~llk~Gi~VVSsE 902 (948)
.++|.|+.|+|++...+.+..|+.+|+..||++...... ...+||+.++ ....+..+...|++||+++
T Consensus 13 ~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~---------~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~ 83 (107)
T 3l3e_A 13 PKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDE---------TVTHFIYQGRPNDTNREYKSVKERGVHIVSEH 83 (107)
T ss_dssp -CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCT---------TCCEEECCCCTTCCCHHHHHHHHTTCEEECHH
T ss_pred cCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccC---------CceEEEecCCCCCCCHHHHHHHHCCCeEecHH
Confidence 579999999999987777999999999999999876432 2356776321 1234556667899999999
Q ss_pred HHHHHHhcC-ccCcccCccccc
Q 002240 903 LLLNGMVTQ-KLEYERHRLFVD 923 (948)
Q Consensus 903 WILdSIL~Q-kLE~E~y~Lf~d 923 (948)
||++|+-.. .++.+.|.+..+
T Consensus 84 Wl~~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 84 WLLDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHHHHHHTSCCCGGGCCTTCC
T ss_pred HHHHHHHhCCCCchhhCCCCCC
Confidence 999999976 468888876543
No 35
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.36 E-value=8.8e-08 Score=99.89 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCC---Ch---HHHHHHHhCC----------CCeec
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFV---RT---RNMLEAIASG----------KPVVT 782 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddisd~THLVA~k~~---RT---~KfL~AIA~G----------ipIVS 782 (948)
|.+++|+|+++..+...+.++.+|..+||.+++++..+||.|+.... |. .++-..++.+ ..||+
T Consensus 161 F~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~ 240 (264)
T 1z56_C 161 FSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVA 240 (264)
T ss_dssp -------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCEEEC
T ss_pred hCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCCEEec
Confidence 67999999997544334456788999999999998876666554321 21 1233334433 38999
Q ss_pred HHHHHHHHHhCCCCCCCCcccCC
Q 002240 783 HLWLESIAQVKIHIDEESYLLRD 805 (948)
Q Consensus 783 p~WLedClkaGk~VDEe~YeL~D 805 (948)
++||.+|++.|+++||+.|.+.+
T Consensus 241 ~~Wv~dci~~~~ll~e~~Y~~~~ 263 (264)
T 1z56_C 241 PEWVDHSINENCQVPEEDFPVVN 263 (264)
T ss_dssp THHHHHHHTTSCCCSSCCC----
T ss_pred HHHHHHHHHcCCcCCHHHcCCCC
Confidence 99999999999999999997654
No 36
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=4.9e-07 Score=83.40 Aligned_cols=76 Identities=12% Similarity=0.228 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC------------CCceEEEeCCCCChHHHHHHHhCCCCeecHHHH
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI------------TDATHFVTDIFVRTRNMLEAIASGKPVVTHLWL 786 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddi------------sd~THLVA~k~~RT~KfL~AIA~GipIVSp~WL 786 (948)
+.++.|++++-.+. ..++.+|+.+||.|..+. ...||+|+++..-. + ...+..||.|+||
T Consensus 13 F~g~~F~i~~e~p~---~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~-~----~~~~r~~VqPqWV 84 (100)
T 2ep8_A 13 FEGLKFFLNREVPR---EALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQ-T----SVIGRCYVQPQWV 84 (100)
T ss_dssp TSSCEEECCSSSCH---HHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTS-C----CBTTBEEECTHHH
T ss_pred cCCcEEEEecCCCH---HHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchh-h----hcCCCeEEcchHH
Confidence 78999999875543 357789999999998752 36999999974211 1 2366789999999
Q ss_pred HHHHHhCCCCCCCCcc
Q 002240 787 ESIAQVKIHIDEESYL 802 (948)
Q Consensus 787 edClkaGk~VDEe~Ye 802 (948)
.+|++++.++|+++|.
T Consensus 85 ~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 85 FDSVNARLLLPVAEYF 100 (100)
T ss_dssp HHHHHHTSCCCTTTCC
T ss_pred HHHHhcCCcCChhhcC
Confidence 9999999999999993
No 37
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.32 E-value=1.3e-06 Score=92.24 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=68.0
Q ss_pred cCCCCCCceEEEe-CCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcC-CeEechh
Q 002240 825 KHPLLKDQRVLIT-PNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKG-AAVYSSE 902 (948)
Q Consensus 825 k~~LF~G~rFyIT-~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~G-i~VVSsE 902 (948)
...||.|+.|||. +...+++..|+.+|..+||+++.... +...+||++... ..+..+.+.| ++||.++
T Consensus 7 ~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~---------~~t~~iIa~~~~-~k~~~~~~~g~~~IV~p~ 76 (263)
T 3ii6_X 7 ISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPG---------PDTYCVIAGSEN-IRVKNIILSNKHDVVKPA 76 (263)
T ss_dssp CCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCC---------TTEEEEECSSCC-HHHHHHHHSCSCCEECHH
T ss_pred CcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCC---------CCEEEEEeCCCC-HHHHHHHhcCCCCEeehH
Confidence 3579999999995 45568899999999999999986431 234566766543 3455566666 9999999
Q ss_pred HHHHHHhcCc-cCcccCccccc
Q 002240 903 LLLNGMVTQK-LEYERHRLFVD 923 (948)
Q Consensus 903 WILdSIL~Qk-LE~E~y~Lf~d 923 (948)
||++||-+++ |++++|.++..
T Consensus 77 Wv~Dci~~~~llp~~p~~~~~~ 98 (263)
T 3ii6_X 77 WLLECFKTKSFVPWQPRFMIHM 98 (263)
T ss_dssp HHHHHHHHTSCCCCCGGGEEEC
T ss_pred HHHHHHhcCCcCCCCHHHHhhC
Confidence 9999999876 59999987755
No 38
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.30 E-value=1.9e-06 Score=80.81 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=65.1
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
.+.+..|+|||..+.-....++.+|+.+||.|+.+++ +++|||++.-.-+-|+-.|...|++||+.+|+.+.+..+
T Consensus 32 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~~ 108 (109)
T 2k6g_A 32 CLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRNL 108 (109)
T ss_dssp TTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHHT
T ss_pred CCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHhC
Confidence 4789999999987542345678899999999999998 799999987544589999999999999999999998765
No 39
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.5e-06 Score=82.97 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCCeEEEE--cCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCCh---HHHHHH----HhCCCCeecHHHHHH
Q 002240 719 MASIQVLF--SHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRT---RNMLEA----IASGKPVVTHLWLES 788 (948)
Q Consensus 719 ms~vrV~F--SGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT---~KfL~A----IA~GipIVSp~WLed 788 (948)
|.++.|.| .++ ......-+.++++..|+.|++.++ .+||+|+... +. ..+|.. .+.+..||+..||++
T Consensus 21 F~g~~iy~v~~~~-g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~-~~~e~~~~l~~~~l~~~~~~~lv~i~Wl~e 98 (120)
T 2coe_A 21 FQDLVVFILEKKM-GTTRRALLMELARRKGFRVENELSDSVTHIVAENN-SGSDVLEWLQAQKVQVSSQPELLDVSWLIE 98 (120)
T ss_dssp CTTCEEEEECTTT-CHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSC-CHHHHHHHHHHCCCCCSSCCEEEEHHHHHH
T ss_pred cCCeEEEEeeccc-chHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCC-CHHHHHHHHhccccccccccEEeecHHHHH
Confidence 66788877 333 344556778899999999999987 7999999743 44 334432 234678999999999
Q ss_pred HHHhCCCCCCCCcc
Q 002240 789 IAQVKIHIDEESYL 802 (948)
Q Consensus 789 ClkaGk~VDEe~Ye 802 (948)
|+++|+++||+.|.
T Consensus 99 smk~g~lv~ee~~~ 112 (120)
T 2coe_A 99 CIGAGKPVEMTGKH 112 (120)
T ss_dssp HHHTTSCCCCSSSS
T ss_pred HHHcCCccCcccce
Confidence 99999999997654
No 40
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.1e-06 Score=81.02 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=65.4
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
.+.+..|+|||....-...+++.+|+.+||.|+.+++ +++|||++.-.-+-|+-.|..+|++||+.+|+.+.+..+
T Consensus 22 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 22 CLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp SSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred CcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 4789999999987542345678899999999999998 799999997544589999999999999999999999854
No 41
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.28 E-value=9e-07 Score=80.58 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHh
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClka 792 (948)
+.+..|+|||..+. ....++.+|+.+||.|+.+++ ++||||++.- .+-|+-.|...|+|||+.+|+.+++..
T Consensus 8 l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~-~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 8 LKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGEN-PGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp STTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSS-SSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred cCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCC-CChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 77999999998865 456789999999999999998 7999999964 368999999999999999999998863
No 42
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=98.28 E-value=2.1e-06 Score=79.88 Aligned_cols=86 Identities=9% Similarity=0.135 Sum_probs=63.7
Q ss_pred CCCCCceEEEeCCC-CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHh--hcCCeEechhH
Q 002240 827 PLLKDQRVLITPNI-KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFL--EKGAAVYSSEL 903 (948)
Q Consensus 827 ~LF~G~rFyIT~~v-kPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~ll--k~Gi~VVSsEW 903 (948)
.+|.|++|||.+.+ .+.+..|+++|.+.||.|...... .-.+||+...-......+. .-++.+|.++|
T Consensus 6 d~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~---------~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~W 76 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNE---------RVQFVITAQEWDPNFEEALMENPSLAFVRPRW 76 (104)
T ss_dssp CTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCT---------TCCEEEESSCCCHHHHHHHTTCTTCEEECHHH
T ss_pred hhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCC---------CceEEEeCCCCChhHHHHhhhCCCCeEEccHH
Confidence 69999999999988 567889999999999997765321 2357776643222222333 23689999999
Q ss_pred HHHHHhcCcc-CcccCccc
Q 002240 904 LLNGMVTQKL-EYERHRLF 921 (948)
Q Consensus 904 ILdSIL~QkL-E~E~y~Lf 921 (948)
|++||-+|++ ..+.|.+.
T Consensus 77 I~~Ci~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 77 IYSCNEKQKLLPHQLYGVV 95 (104)
T ss_dssp HHHHHHHTSCCCGGGGBCC
T ss_pred HHHHHhcCccCCcccceec
Confidence 9999999986 77777654
No 43
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.15 E-value=5.5e-06 Score=87.31 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=68.7
Q ss_pred ccCCCCCCceEEEeCCCCC-----------------------------CHHHHHHHHHhCCcEEEeccCcccccCCCCCC
Q 002240 824 RKHPLLKDQRVLITPNIKP-----------------------------SKETISSLIKSVHGQAVERLGRSALKDDKLPD 874 (948)
Q Consensus 824 rk~~LF~G~rFyIT~~vkP-----------------------------skd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd 874 (948)
+..+||.|+.|+||....+ .+.+|+.+|+.+||.|+.....+.. ....
T Consensus 11 ~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~---~~~~ 87 (259)
T 1kzy_C 11 LNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQC---NTAY 87 (259)
T ss_dssp SSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTT---TTTC
T ss_pred CCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCcccccc---ccCC
Confidence 3468999999999887553 4578999999999999976543210 1122
Q ss_pred ceEEEecCCc-hhccHHHhhcCCeEechhHHHHHHhcCc-cCcccCccccc
Q 002240 875 DLLILSCEED-YEICEPFLEKGAAVYSSELLLNGMVTQK-LEYERHRLFVD 923 (948)
Q Consensus 875 ~lIIISceeD-~~~~~~llk~Gi~VVSsEWILdSIL~Qk-LE~E~y~Lf~d 923 (948)
..++|+.... ...+...+..|++||+.+||.+|+-..+ ++++.|.|...
T Consensus 88 ~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g 138 (259)
T 1kzy_C 88 QCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAG 138 (259)
T ss_dssp EEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCE
T ss_pred CeEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCC
Confidence 4567775422 2223334467999999999999999876 59999998643
No 44
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=98.15 E-value=5.1e-06 Score=79.19 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=63.8
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHh---hcCCeEechh
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFL---EKGAAVYSSE 902 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~ll---k~Gi~VVSsE 902 (948)
..+|.|+.|||.+........|..+|+.+||+++..... .-++||+..... ....++ ..++.||+++
T Consensus 38 ~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~---------~vTHvI~~~~~~-~~~~~~~~~~~~~~iV~~~ 107 (132)
T 1wf6_A 38 EDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNE---------DVTHVIVGDYDD-ELKQFWNKSAHRPHVVGAK 107 (132)
T ss_dssp TTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCS---------SCCEEEESSCCS-HHHHHHHHSCCCCCEEEHH
T ss_pred ccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCC---------CCeEEEECCchH-HHHHHHHhhCCCCeEechH
Confidence 579999999999876666888999999999999876432 225777654322 222232 2468999999
Q ss_pred HHHHHHhcCc-cCcccCccc
Q 002240 903 LLLNGMVTQK-LEYERHRLF 921 (948)
Q Consensus 903 WILdSIL~Qk-LE~E~y~Lf 921 (948)
||++||-.++ |+.+.|.+.
T Consensus 108 Wv~dsi~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 108 WLLECFSKGYMLSEEPYIHS 127 (132)
T ss_dssp HHHHHHHHSSCCCSGGGBCC
T ss_pred HHHHHHHcCCcCCHhhccCC
Confidence 9999999876 588888654
No 45
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.11 E-value=7.5e-06 Score=85.52 Aligned_cols=96 Identities=7% Similarity=0.055 Sum_probs=66.7
Q ss_pred CCCCCceEEEeCC---CCCCHHHHHHHHHhCCcEEEeccCcccccCC--C---------------CCCceEEEecCCc-h
Q 002240 827 PLLKDQRVLITPN---IKPSKETISSLIKSVHGQAVERLGRSALKDD--K---------------LPDDLLILSCEED-Y 885 (948)
Q Consensus 827 ~LF~G~rFyIT~~---vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~--~---------------~pd~lIIISceeD-~ 885 (948)
.||.|+.|+|+.. ....+..|+++|+.+||+|+..--..++... . .-..++||+.... .
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 3899999999987 2346899999999999999875100000000 0 0023677776543 2
Q ss_pred hccHHHhhcCCeEechhHHHHHHhcCcc-CcccCcccc
Q 002240 886 EICEPFLEKGAAVYSSELLLNGMVTQKL-EYERHRLFV 922 (948)
Q Consensus 886 ~~~~~llk~Gi~VVSsEWILdSIL~QkL-E~E~y~Lf~ 922 (948)
..+...+..|++||+++||.+||-..++ +++.|.|..
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 2334445679999999999999998774 999998853
No 46
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.01 E-value=1.7e-05 Score=73.87 Aligned_cols=89 Identities=8% Similarity=0.046 Sum_probs=68.9
Q ss_pred CCCCCCceEEEeCCCC----CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEech
Q 002240 826 HPLLKDQRVLITPNIK----PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSS 901 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vk----Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSs 901 (948)
.++|+|+.+||..... ...+.|..+++..||+++....+ .-++||..+.....+....+.+++||++
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~---------~vTHvV~~~~~~~~~~~A~~~~i~iV~~ 75 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNK---------QVTHVIFKDGYQSTWDKAQKRGVKLVSV 75 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCT---------TCCEEEEESCCHHHHHHHHHHTCEEECH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCC---------CccEEEEeCCCChHHHHHhcCCCEEECH
Confidence 4799999999965532 23578999999999999987643 2357776555545556666779999999
Q ss_pred hHHHHHHhcC-ccCcccCccccc
Q 002240 902 ELLLNGMVTQ-KLEYERHRLFVD 923 (948)
Q Consensus 902 EWILdSIL~Q-kLE~E~y~Lf~d 923 (948)
+||.+|+-.. .+|-+.|.+..+
T Consensus 76 ~Wv~~C~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 76 LWVEKCRTAGAHIDESLFPAANM 98 (107)
T ss_dssp HHHHHHHHHTSCCCGGGSBCCCT
T ss_pred HHHHHHHHhCccCChhcccCCCC
Confidence 9999999976 469999988755
No 47
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.00 E-value=6.5e-06 Score=83.54 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=57.8
Q ss_pred cCCCeEEEEcC-CCCHHHHHHHHHHHHHcCCEEeccCCC------ceEEE-eCCC--CChHHHHH-HHhCCCCeecHHHH
Q 002240 718 DMASIQVLFSH-HLDEDIIKQQKKILDRLGASEVSSITD------ATHFV-TDIF--VRTRNMLE-AIASGKPVVTHLWL 786 (948)
Q Consensus 718 ~ms~vrV~FSG-f~dee~~k~LKKiIk~LGGsVvddisd------~THLV-A~k~--~RT~KfL~-AIA~GipIVSp~WL 786 (948)
-+.++.|+|+| +... ..+.++.+|+..||.|+..... ++||| +..- .+..++-. |...|++||+++||
T Consensus 117 lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~Wl 195 (229)
T 1l0b_A 117 LFEGLQIYCCEPFTNM-PKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWV 195 (229)
T ss_dssp CCTTCEEEECSCCSSS-CHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHH
T ss_pred hhcCceEEEEecCCCC-CHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHH
Confidence 48899999977 4432 2456889999999999988864 47744 4421 23333321 23479999999999
Q ss_pred HHHHHhCCCCCCCCcccCCc
Q 002240 787 ESIAQVKIHIDEESYLLRDT 806 (948)
Q Consensus 787 edClkaGk~VDEe~YeL~D~ 806 (948)
.+|+.++.++++++|.+...
T Consensus 196 ldsI~~~~~~~~~~Y~l~~~ 215 (229)
T 1l0b_A 196 LDSISVYRCRDLDAYLVQNI 215 (229)
T ss_dssp HHHHHTTSCCCGGGGBCC--
T ss_pred HHHHhcCCcCCccceEcccc
Confidence 99999999999999988753
No 48
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=97.99 E-value=3.3e-06 Score=85.67 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=63.6
Q ss_pred cCCCeE-EEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCC
Q 002240 718 DMASIQ-VLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHI 796 (948)
Q Consensus 718 ~ms~vr-V~FSGf~dee~~k~LKKiIk~LGGsVvddisd~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~V 796 (948)
=|.++. ++++++.... .+.++.+|+..||.|+.++..++++|++... +...+++||+|+||.+|+.++.++
T Consensus 119 LF~g~~~~~v~~~~~~~-~~~L~~lI~~~GG~v~~~~~~~~iiI~~~~~-------~~~~~~~~V~p~Wi~DsI~~~~ll 190 (199)
T 3u3z_A 119 LFADQPVMFVSPASSPP-VAKLCELVHLCGGRVSQVPRQASIVIGPYSG-------KKKATVKYLSEKWVLDSITQHKVC 190 (199)
T ss_dssp TTTTSCCEEECTTCSSC-HHHHHHHHHHTTCCBCSSGGGCSEEESCCCS-------CCCTTCEEECHHHHHHHHHHTSCC
T ss_pred hhCCCeEEEECCCCCCC-HHHHHHHHHHcCCEEeccCCCCEEEEeCCch-------hccCCCcEEChhHHHHHHHcCCcC
Confidence 477885 5667765433 3578999999999999999889988876322 235799999999999999999999
Q ss_pred CCCCcccC
Q 002240 797 DEESYLLR 804 (948)
Q Consensus 797 DEe~YeL~ 804 (948)
|+++|.+.
T Consensus 191 p~~~Y~~~ 198 (199)
T 3u3z_A 191 APENYLLS 198 (199)
T ss_dssp CGGGGBCC
T ss_pred ChHhccCC
Confidence 99999764
No 49
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=97.98 E-value=8e-06 Score=74.21 Aligned_cols=69 Identities=9% Similarity=0.148 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC--CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhCCCC
Q 002240 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT--DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHI 796 (948)
Q Consensus 719 ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis--d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaGk~V 796 (948)
+.++++.+.+-.+.. ..+.+.|.++||.|+.+.. ++||+|++.. ...+..+|+|+||.+|++.|++|
T Consensus 17 Fsg~~~~l~~~v~~~--~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~---------~~~~~~~V~p~WI~dcI~k~~Ll 85 (88)
T 3pc7_A 17 FTGVRLYLPPSTPDF--SRLRRYFVAFDGDLVQEFDMTSATHVLGSRD---------KNPAAQQVSPEWIWACIRKRRLV 85 (88)
T ss_dssp STTCEECCCTTSTTH--HHHHHHHHHTTCEECCGGGGGGCSEEESCCT---------TCTTSEEECHHHHHHHHHHTSCC
T ss_pred hcCeEEEccCCcCch--hhheeeeeecCCEEecccCCCcCeEEecCCC---------cCCCCcEEchHHHHHHHhCCccc
Confidence 778999996644333 4578899999999987554 7999998764 37889999999999999999999
Q ss_pred CC
Q 002240 797 DE 798 (948)
Q Consensus 797 DE 798 (948)
++
T Consensus 86 ~~ 87 (88)
T 3pc7_A 86 AP 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 50
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.90 E-value=1.5e-05 Score=75.29 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=61.2
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCC--CChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIF--VRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~--~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
.+.+..|+|||.+.. ...+++.+|+.+||.|+.+++ ++||||++.- .-+-|+-.|...|+|||+.+||.++...+
T Consensus 10 ~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~~ 87 (113)
T 2cok_A 10 PLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAST 87 (113)
T ss_dssp SSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSCC
T ss_pred CcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhhc
Confidence 378999999997754 356788999999999999998 6889998831 13579999999999999999966655443
No 51
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.85 E-value=9.1e-06 Score=81.21 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=62.7
Q ss_pred cCCCeEEEEcC-CCCHHHHHHHHHHHHHcCCEEeccCCCc-----eE-E-EeCCCCC--hHHH-HHHHhCCCCeecHHHH
Q 002240 718 DMASIQVLFSH-HLDEDIIKQQKKILDRLGASEVSSITDA-----TH-F-VTDIFVR--TRNM-LEAIASGKPVVTHLWL 786 (948)
Q Consensus 718 ~ms~vrV~FSG-f~dee~~k~LKKiIk~LGGsVvddisd~-----TH-L-VA~k~~R--T~Kf-L~AIA~GipIVSp~WL 786 (948)
-|.++.|+|++ +... ..+.++.+|+..||.|+...... +| + |++.-.. ..++ -.|...|++||+++||
T Consensus 115 lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi 193 (214)
T 1t15_A 115 IFRGLEICCYGPFTNM-PTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWV 193 (214)
T ss_dssp TTTTCEEEECSCCSSS-CHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHH
T ss_pred ccCCCEEEEEecCCCC-CHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHH
Confidence 48899999987 4322 24568899999999998877532 24 4 3432111 1122 1244679999999999
Q ss_pred HHHHHhCCCCCCCCcccCC
Q 002240 787 ESIAQVKIHIDEESYLLRD 805 (948)
Q Consensus 787 edClkaGk~VDEe~YeL~D 805 (948)
.+|+.++.++|+++|.+.+
T Consensus 194 ~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 194 LDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp HHHHHHTSCCCSGGGBCCC
T ss_pred HHhHhhcCcCCCcceeecc
Confidence 9999999999999998864
No 52
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=3.7e-05 Score=70.90 Aligned_cols=86 Identities=8% Similarity=0.105 Sum_probs=58.4
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccC---cccccCCCCCCceEEEecCCchhccHHHhhcCCeEechh
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLG---RSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSE 902 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~p---rs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsE 902 (948)
..||+|++|||...+ +++.|+.+|+++||+|+...- -+.+... .+..+++|++...... ...+..+|.++
T Consensus 10 ~~LF~g~~F~i~~e~--p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~-~~~iTh~I~drp~~~~----~~~~r~~VqPq 82 (100)
T 2ep8_A 10 KKLFEGLKFFLNREV--PREALAFIIRSFGGEVSWDKSLCIGATYDVT-DSRITHQIVDRPGQQT----SVIGRCYVQPQ 82 (100)
T ss_dssp CCTTSSCEEECCSSS--CHHHHHHHHHHTTCEEECCTTTSSCCCSCTT-CTTCCEEECSCTTTSC----CBTTBEEECTH
T ss_pred HHHcCCcEEEEecCC--CHHHHHHHHHHcCCEEEeccccccCcccccC-CCceEEEEecccchhh----hcCCCeEEcch
Confidence 579999999998754 689999999999999876420 0001100 1234677765322111 12356899999
Q ss_pred HHHHHHhcCcc-CcccC
Q 002240 903 LLLNGMVTQKL-EYERH 918 (948)
Q Consensus 903 WILdSIL~QkL-E~E~y 918 (948)
||++||-.++| +++.|
T Consensus 83 WV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 83 WVFDSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHHHHTSCCCTTTC
T ss_pred HHHHHHhcCCcCChhhc
Confidence 99999999875 77766
No 53
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=97.76 E-value=3.8e-05 Score=69.79 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=55.6
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
..+|.|++|||.+.+ +....|++.|.+.||.|+...... .-.+||.+.. ...+..+|.++||+
T Consensus 14 pdiFsg~~~~l~~~v-~~~~~l~RyiiAfgG~v~~~~~~~--------~vTHvI~~~~--------~~~~~~~V~p~WI~ 76 (88)
T 3pc7_A 14 LDIFTGVRLYLPPST-PDFSRLRRYFVAFDGDLVQEFDMT--------SATHVLGSRD--------KNPAAQQVSPEWIW 76 (88)
T ss_dssp CCCSTTCEECCCTTS-TTHHHHHHHHHHTTCEECCGGGGG--------GCSEEESCCT--------TCTTSEEECHHHHH
T ss_pred ChhhcCeEEEccCCc-CchhhheeeeeecCCEEecccCCC--------cCeEEecCCC--------cCCCCcEEchHHHH
Confidence 479999999998877 456799999999999998743211 1257775543 13478999999999
Q ss_pred HHHhcCccC
Q 002240 906 NGMVTQKLE 914 (948)
Q Consensus 906 dSIL~QkLE 914 (948)
+||-+++|-
T Consensus 77 dcI~k~~Ll 85 (88)
T 3pc7_A 77 ACIRKRRLV 85 (88)
T ss_dssp HHHHHTSCC
T ss_pred HHHhCCccc
Confidence 999999874
No 54
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=3e-05 Score=71.81 Aligned_cols=85 Identities=14% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCCCCCceEEEeCCCC-----CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEec
Q 002240 826 HPLLKDQRVLITPNIK-----PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYS 900 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vk-----Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVS 900 (948)
.++|+|+.|||..+.. ...+.|.++|.+.||.|+...|+. .....+|||..++. +++.|+
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~------s~~~~yVVSpyN~t---------~LpTVt 73 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRE------SKENVFIVSPYNHT---------NLPTVT 73 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCC------CSSCCCCBCTTCCC---------SSSBCC
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCccc------ccCCeEEEeCCCCC---------CCcccc
Confidence 5789999999987532 348999999999999999988753 12357888876665 579999
Q ss_pred hhHHHHHHhcCcc-CcccCccccccc
Q 002240 901 SELLLNGMVTQKL-EYERHRLFVDNV 925 (948)
Q Consensus 901 sEWILdSIL~QkL-E~E~y~Lf~d~v 925 (948)
+-||..||....| +.+.|.+..+..
T Consensus 74 pTYI~aC~~~nTLLnv~~YLvp~d~~ 99 (106)
T 2l42_A 74 PTYIKACCQSNSLLNMENYLVPYDNL 99 (106)
T ss_dssp TTHHHHHHHSTTSCGGGGCCBCSCC-
T ss_pred HHHHHHHHhcCceecccccccCchhh
Confidence 9999999998875 999999887754
No 55
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=97.71 E-value=4.1e-05 Score=74.30 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCC-CHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC--CCChHHHHH----HH---hCCCCeecHHHHH
Q 002240 719 MASIQVLFSHHL-DEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI--FVRTRNMLE----AI---ASGKPVVTHLWLE 787 (948)
Q Consensus 719 ms~vrV~FSGf~-dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k--~~RT~KfL~----AI---A~GipIVSp~WLe 787 (948)
+.+++|.+=... ......-+.+++...|+.|.+.++ .+||+|+.. ..|...+|. ++ +.+.++|+..||.
T Consensus 11 F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdisWlt 90 (133)
T 2dun_A 11 FPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDISWLT 90 (133)
T ss_dssp EEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEHHHHH
T ss_pred cCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEeccHHHH
Confidence 456677663321 123455688999999999999998 799999975 445666662 12 2668899999999
Q ss_pred HHHHhCCCCCCCCcc
Q 002240 788 SIAQVKIHIDEESYL 802 (948)
Q Consensus 788 dClkaGk~VDEe~Ye 802 (948)
+|+++|+.||++.|.
T Consensus 91 ecm~~g~pV~~e~~~ 105 (133)
T 2dun_A 91 ESLGAGQPVPVECRH 105 (133)
T ss_dssp HHHHHTSCCCCCTTT
T ss_pred HHHhcCCcCCcccce
Confidence 999999999996654
No 56
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.66 E-value=6.9e-05 Score=76.07 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=66.8
Q ss_pred hccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCC---ceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHh
Q 002240 716 RRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITD---ATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQV 792 (948)
Q Consensus 716 rr~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddisd---~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClka 792 (948)
..-+.+++|+|++..... .+.++.+|+..||.|...... -+|+|.....-..++-.++..|+|||+++||.+|+..
T Consensus 113 ~~lF~g~~~~~~~~~~~~-~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~ 191 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPP-PPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLK 191 (209)
T ss_dssp SCTTTTCEEEECTTCSSC-HHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHH
T ss_pred CCCcCCcEEEEeCCCCCC-HHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHh
Confidence 356889999999875433 356889999999999887653 3677764332233444577889999999999999998
Q ss_pred CCCCCCCCcccCC
Q 002240 793 KIHIDEESYLLRD 805 (948)
Q Consensus 793 Gk~VDEe~YeL~D 805 (948)
+.+ |++.|.|..
T Consensus 192 q~l-d~e~y~l~~ 203 (209)
T 2etx_A 192 QEA-KPEAFVLSP 203 (209)
T ss_dssp TCC-CGGGGBCCT
T ss_pred ccc-ChHHheecC
Confidence 775 999998754
No 57
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.60 E-value=1.9e-05 Score=79.57 Aligned_cols=83 Identities=6% Similarity=-0.065 Sum_probs=57.7
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC------------------------CCceEEEeCCCCChHHHHH
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI------------------------TDATHFVTDIFVRTRNMLE 772 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddi------------------------sd~THLVA~k~~RT~KfL~ 772 (948)
.-|.++.|+|++.......+.++.+|+..||.|+... ..|||+|+....+-.+.-.
T Consensus 103 ~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~~~ 182 (210)
T 2nte_A 103 KLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHPER 182 (210)
T ss_dssp CTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCCSC
T ss_pred cccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCHHH
Confidence 3578999999983222234578999999999998511 2479998865321100001
Q ss_pred HHhCCCCeecHHHHHHHHHhCCCCCCC
Q 002240 773 AIASGKPVVTHLWLESIAQVKIHIDEE 799 (948)
Q Consensus 773 AIA~GipIVSp~WLedClkaGk~VDEe 799 (948)
+...+++||+++||.+|+.++.++|.+
T Consensus 183 ~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 183 VRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp SEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred HhccCcccccHHHHHHHHHhCeeccCC
Confidence 223566999999999999999999865
No 58
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.58 E-value=0.00011 Score=66.86 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=58.9
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
.++|.|++|+||+....++++++.+|+..||+|....... .+ +||..++.-..+..+.+.|++|++.+|++
T Consensus 5 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskk--------t~-~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~ 75 (92)
T 1l7b_A 5 GEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRK--------TS-YLVVGENPGSKLEKARALGVPTLTEEELY 75 (92)
T ss_dssp CCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSS--------CC-CBEECSSSSTTHHHHHCSSSCCEEHHHHH
T ss_pred CCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCC--------ee-EEEeCCCCChHHHHHHHcCCcEEeHHHHH
Confidence 3579999999999886689999999999999998775432 12 44444443355666777899999999999
Q ss_pred HHHh
Q 002240 906 NGMV 909 (948)
Q Consensus 906 dSIL 909 (948)
+.|-
T Consensus 76 ~~l~ 79 (92)
T 1l7b_A 76 RLLE 79 (92)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 59
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=97.56 E-value=0.00013 Score=81.00 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=68.1
Q ss_pred CCCCCCceEEEeCCC----CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhc-CCeEec
Q 002240 826 HPLLKDQRVLITPNI----KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEK-GAAVYS 900 (948)
Q Consensus 826 ~~LF~G~rFyIT~~v----kPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~-Gi~VVS 900 (948)
..+|.|++|+|++.. .+....+..+|+..||+++..... ..++||+.......+..+.+. |++||+
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~---------~vTHLVa~~~~t~K~~~A~~~~~I~IV~ 350 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSV---------PPTHLIAAKIRTEKVKKAVSMGNIKVVK 350 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSS---------CCSEEEECSCCCHHHHHHHHSSSCCEEE
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCC---------CceEEEEcCCCchHHHHHHhcCCCEEEc
Confidence 478999999999875 244688999999999999887532 235777765555556666666 799999
Q ss_pred hhHHHHHHhcC-ccCcccCccc
Q 002240 901 SELLLNGMVTQ-KLEYERHRLF 921 (948)
Q Consensus 901 sEWILdSIL~Q-kLE~E~y~Lf 921 (948)
++||++|+... .++-+.|.|+
T Consensus 351 ~~Wl~~c~~~~~~vdE~~Y~l~ 372 (372)
T 3ef0_A 351 LNWLTESLSQWKRLPESDYLLY 372 (372)
T ss_dssp HHHHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHHHHHhCCcCChhhceeC
Confidence 99999999865 5688888774
No 60
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=97.49 E-value=0.00015 Score=82.34 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=72.5
Q ss_pred ChhHHhhhcccCCCCCCceEEEeCCC----CCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHH
Q 002240 815 SMPASLARARKHPLLKDQRVLITPNI----KPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEP 890 (948)
Q Consensus 815 sL~~SLarArk~~LF~G~rFyIT~~v----kPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~ 890 (948)
++...+..-+ .++|.|+.|+|++.. .+.+..|..+|+..||++...... ..++||+.......+..
T Consensus 340 Dv~~il~~~k-~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~---------~vTHLVa~~~~t~K~~~ 409 (442)
T 3ef1_A 340 NVGLIIPKMK-QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSV---------PPTHLIAAKIRTEKVKK 409 (442)
T ss_dssp CHHHHHHHHH-HTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSS---------CCSEEEECSCCCHHHHH
T ss_pred cHHHHHHHHh-hcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCC---------CceEEEeCCCCCHHHHH
Confidence 3444443332 368999999999976 345689999999999999876532 23578777665566666
Q ss_pred Hhhc-CCeEechhHHHHHHhcC-ccCcccCccc
Q 002240 891 FLEK-GAAVYSSELLLNGMVTQ-KLEYERHRLF 921 (948)
Q Consensus 891 llk~-Gi~VVSsEWILdSIL~Q-kLE~E~y~Lf 921 (948)
+.+. |++||+++||++|+... +++-..|.|+
T Consensus 410 A~~~g~IkIVs~~WL~dcl~~~krldE~~YlLy 442 (442)
T 3ef1_A 410 AVSMGNIKVVKLNWLTESLSQWKRLPESDYLLY 442 (442)
T ss_dssp HHHHSSSEEEEHHHHHHHHHHTSCCCGGGTBCC
T ss_pred HHhcCCCEEEeHHHHHHHHHcCCcCChhccccC
Confidence 6666 59999999999999975 5788888774
No 61
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.44 E-value=0.0003 Score=66.38 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=63.5
Q ss_pred CCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCC---chhccHHHhhcCCeEechh
Q 002240 826 HPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE---DYEICEPFLEKGAAVYSSE 902 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIIScee---D~~~~~~llk~Gi~VVSsE 902 (948)
..+|.|++|.|++....++++++++|+..||+|....... ..+||++++ .-..+..+.+.|++|++.+
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskk---------T~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKA---------SLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTC---------SEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccC---------ccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 3579999999999987789999999999999998775432 246666621 1134455667899999999
Q ss_pred H----------HHHHHhcCcc-CcccC
Q 002240 903 L----------LLNGMVTQKL-EYERH 918 (948)
Q Consensus 903 W----------ILdSIL~QkL-E~E~y 918 (948)
| +.++|..+.+ +|+..
T Consensus 79 ~l~~~~~~~~~~~~~i~k~~i~~w~~~ 105 (113)
T 2cok_A 79 FLQDVSASTKSLQELFLAHILSSWGAE 105 (113)
T ss_dssp HHHHHHSCCSCHHHHHHHTBCSSCCCS
T ss_pred HHHHHHhhchhHHHHHHHhcCCCCCCC
Confidence 9 7777777765 66653
No 62
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.39 E-value=0.00062 Score=63.76 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=57.9
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch-hccHHHhhcCCeEechhHH
Q 002240 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY-EICEPFLEKGAAVYSSELL 904 (948)
Q Consensus 827 ~LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~-~~~~~llk~Gi~VVSsEWI 904 (948)
..|.|++|+||+... -++++++++|+..||+|....... .+ +||+.++.- ..+..+.+.|++|++.+||
T Consensus 31 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkk--------Td-~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f 101 (109)
T 2k6g_A 31 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKK--------TN-YLVMGRDSGQSKSDKAAALGTKIIDEDGL 101 (109)
T ss_dssp TTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTT--------CC-EEEECBCCCHHHHHHHHHHTCEEECHHHH
T ss_pred CCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCC--------ce-EEEECCCCChHHHHHHHHcCCeEEeHHHH
Confidence 479999999999874 479999999999999998875432 13 445444332 4555666789999999999
Q ss_pred HHHHhcC
Q 002240 905 LNGMVTQ 911 (948)
Q Consensus 905 LdSIL~Q 911 (948)
++.|-..
T Consensus 102 ~~ll~~~ 108 (109)
T 2k6g_A 102 LNLIRNL 108 (109)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9987543
No 63
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00069 Score=63.90 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCCCCceEEEeCCCC-CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCch-hccHHHhhcCCeEechhHH
Q 002240 827 PLLKDQRVLITPNIK-PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDY-EICEPFLEKGAAVYSSELL 904 (948)
Q Consensus 827 ~LF~G~rFyIT~~vk-Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~-~~~~~llk~Gi~VVSsEWI 904 (948)
..|.|++|+||+... -++++++++|+..||+|....... .+ +||+.++.- ..+..+.+.|++|++.+||
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkk--------Td-~LV~G~~~g~sKl~KA~~lgI~IisE~~f 91 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKK--------TN-YLVMGRDSGQSKSDKAAALGTKIIDEDGL 91 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSS--------CC-EEEECSSCCSHHHHHHHHHTCEEEEHHHH
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCC--------ee-EEEecCCCChHHHHHHHHcCCeEEeHHHH
Confidence 479999999999884 479999999999999998765432 12 455554432 4555666789999999999
Q ss_pred HHHHhc
Q 002240 905 LNGMVT 910 (948)
Q Consensus 905 LdSIL~ 910 (948)
++.|-.
T Consensus 92 ~~ll~~ 97 (112)
T 2ebu_A 92 LNLIRT 97 (112)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998864
No 64
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.89 E-value=0.00085 Score=69.13 Aligned_cols=87 Identities=11% Similarity=-0.027 Sum_probs=64.8
Q ss_pred CCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCC-chhccHHHhhcCCeEechhHHH
Q 002240 827 PLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE-DYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 827 ~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIIScee-D~~~~~~llk~Gi~VVSsEWIL 905 (948)
.++.|.+|++++......+.+..+|+..||+++..... -.+||+... ....+...+..|++||+++||.
T Consensus 12 ~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~~~----------~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~ 81 (219)
T 3sqd_A 12 TPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESAQK----------CTHLIASKVTRTVKFLTAISVVKHIVTPEWLE 81 (219)
T ss_dssp CGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSGGG----------CSEEECSSCCCCHHHHHHTTTCSEEECHHHHH
T ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCCCC----------ceEEEECCCCCCHHHHHHHHcCCCEecHHHHH
Confidence 46889999999976555678999999999999865422 246766432 2223444567899999999999
Q ss_pred HHHhcCc-cCcccCccccc
Q 002240 906 NGMVTQK-LEYERHRLFVD 923 (948)
Q Consensus 906 dSIL~Qk-LE~E~y~Lf~d 923 (948)
+|+-..+ ++.+.|.|..+
T Consensus 82 ~c~~~~~~l~e~~y~l~d~ 100 (219)
T 3sqd_A 82 ECFRCQKFIDEQNYILRDA 100 (219)
T ss_dssp HHHHHTSCCCSGGGBCCCH
T ss_pred HHHHcCCCCChHhccCCCc
Confidence 9999765 58888888643
No 65
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=96.69 E-value=0.0027 Score=66.19 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=68.3
Q ss_pred ccCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC-----CCceEEEeCCC--C---ChHHHHHHHhCCCCeecHHHH
Q 002240 717 RDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI-----TDATHFVTDIF--V---RTRNMLEAIASGKPVVTHLWL 786 (948)
Q Consensus 717 r~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddi-----sd~THLVA~k~--~---RT~KfL~AIA~GipIVSp~WL 786 (948)
+-+.+++|+|.+- ....+.++.+|+.-||.|.... .+.||++++.. . ...+|..+...|++||+++||
T Consensus 134 ~lF~g~~v~l~~~--~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewl 211 (235)
T 3al2_A 134 GAFSGWKVILHVD--QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYI 211 (235)
T ss_dssp STTTTCEEEEECC--HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHH
T ss_pred CCCCCcEEEEecC--CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHH
Confidence 4688999999874 3345678999999999997653 35799887631 1 013577778899999999999
Q ss_pred HHHHHhCCCCCCCCcccCC
Q 002240 787 ESIAQVKIHIDEESYLLRD 805 (948)
Q Consensus 787 edClkaGk~VDEe~YeL~D 805 (948)
.+++-...+.+.+.|.|..
T Consensus 212 ld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 212 ADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp HHHHHCSSCCCHHHHBCGG
T ss_pred HHHHhcCCCCChhheEccc
Confidence 9999999999999998865
No 66
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.0058 Score=58.39 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=62.5
Q ss_pred CCCCCCceEEEeCCCCCC--HHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhh-------cCC
Q 002240 826 HPLLKDQRVLITPNIKPS--KETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLE-------KGA 896 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkPs--kd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk-------~Gi 896 (948)
..+|.|+++||.+.-... .+.+..++...||+|+..... .-++||+.+.+...+..+++ .+.
T Consensus 18 ~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~---------~VTHVVve~~~~~e~~~~l~~~~l~~~~~~ 88 (120)
T 2coe_A 18 DIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSD---------SVTHIVAENNSGSDVLEWLQAQKVQVSSQP 88 (120)
T ss_dssp CCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCT---------TCCEEEESSCCHHHHHHHHHHCCCCCSSCC
T ss_pred ccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCC---------CcCEEEecCCCHHHHHHHHhcccccccccc
Confidence 479999999997654432 567899999999999876532 23577776555544444443 257
Q ss_pred eEechhHHHHHHhcCcc-Cc-ccCcccc
Q 002240 897 AVYSSELLLNGMVTQKL-EY-ERHRLFV 922 (948)
Q Consensus 897 ~VVSsEWILdSIL~QkL-E~-E~y~Lf~ 922 (948)
.+|+.+||.+||-..++ +- ..|+|-.
T Consensus 89 ~lv~i~Wl~esmk~g~lv~ee~~~~l~~ 116 (120)
T 2coe_A 89 ELLDVSWLIECIGAGKPVEMTGKHQLSG 116 (120)
T ss_dssp EEEEHHHHHHHHHTTSCCCCSSSSBCCC
T ss_pred EEeecHHHHHHHHcCCccCcccceEecc
Confidence 89999999999998765 55 4444443
No 67
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=96.55 E-value=0.0018 Score=60.01 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=60.9
Q ss_pred CCCCCCceEEEeCCCC--CCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecC-Cchhc-cHHHhh----cCCe
Q 002240 826 HPLLKDQRVLITPNIK--PSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCE-EDYEI-CEPFLE----KGAA 897 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vk--Pskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISce-eD~~~-~~~llk----~Gi~ 897 (948)
..+|+|++|||.+... +..+.+..+++..||+|+..... .-++||..+ .+... +..+.. .++.
T Consensus 9 ~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~---------~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~ 79 (106)
T 2jw5_A 9 EEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGP---------GVTHIVVDEGMDYERALRLLRLPQLPPGAQ 79 (106)
T ss_dssp GGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCT---------TCCEEEECSSSCHHHHHHHTTCSSCCSSCE
T ss_pred cCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCC---------CccEEEEcCCCCHHHHHHHHhhcccCCCcE
Confidence 3599999999865432 34667788999999999876421 235777753 22322 222221 3567
Q ss_pred EechhHHHHHHhcCc-cCcccCccccc
Q 002240 898 VYSSELLLNGMVTQK-LEYERHRLFVD 923 (948)
Q Consensus 898 VVSsEWILdSIL~Qk-LE~E~y~Lf~d 923 (948)
+|+.+||.+||-..+ ||-+.|.|+.+
T Consensus 80 iV~~~Wv~dci~~~~llde~~y~~~~~ 106 (106)
T 2jw5_A 80 LVKSAWLSLCLQERRLVDVAGFSIFIP 106 (106)
T ss_dssp EEEHHHHHHHHHTCSCCCGGGTBCSCC
T ss_pred EecCchHHHHHhcCcccCcccccccCC
Confidence 999999999999765 48889987753
No 68
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0063 Score=61.69 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=73.5
Q ss_pred chhhhhccCCCeEEEEcCCCCHHH--HHHHHHHHHHcCCEEec-cCC-CceEEEeCCC---CChHHHHHHHhCCCCeecH
Q 002240 711 KDLRKRRDMASIQVLFSHHLDEDI--IKQQKKILDRLGASEVS-SIT-DATHFVTDIF---VRTRNMLEAIASGKPVVTH 783 (948)
Q Consensus 711 K~sr~rr~ms~vrV~FSGf~dee~--~k~LKKiIk~LGGsVvd-dis-d~THLVA~k~---~RT~KfL~AIA~GipIVSp 783 (948)
-++-++.+|+++.||+.-+.+-.. .-++.+.+...|+.-.. .+. +.||+|++.+ .-...++.|--..+|||.|
T Consensus 154 lrthkmtdmsgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrp 233 (290)
T 4gns_A 154 LRTHKMTDMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRP 233 (290)
T ss_dssp EECCCTTCCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECT
T ss_pred eeecccccccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCH
Confidence 355667899999999987653210 11467789999986433 333 8999999863 4478899999999999999
Q ss_pred HHHHHHHHhCCCCCCCCcccCC
Q 002240 784 LWLESIAQVKIHIDEESYLLRD 805 (948)
Q Consensus 784 ~WLedClkaGk~VDEe~YeL~D 805 (948)
+|+.+|--..+++.-..|.+..
T Consensus 234 ewvracevekrivgvrgfylda 255 (290)
T 4gns_A 234 EWVRACEVEKRIVGVRGFYLDA 255 (290)
T ss_dssp HHHHHHHHTTSCCCSGGGBTTS
T ss_pred HHHHHHhhhheeeeeeeEEEcc
Confidence 9999999999999888876653
No 69
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0028 Score=58.91 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=59.8
Q ss_pred CCCeEEEEcC----CCCHHHHHHHHHHHHHcCCEEeccCCCc---eEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHH
Q 002240 719 MASIQVLFSH----HLDEDIIKQQKKILDRLGASEVSSITDA---THFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (948)
Q Consensus 719 ms~vrV~FSG----f~dee~~k~LKKiIk~LGGsVvddisd~---THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClk 791 (948)
+.++.+.+-. ......+++++++|...||.|...+.+- .++|+....-| ++|.|+|.||.+|++
T Consensus 12 F~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t---------~LpTVtpTYI~aC~~ 82 (106)
T 2l42_A 12 LSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT---------NLPTVTPTYIKACCQ 82 (106)
T ss_dssp SCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC---------SSSBCCTTHHHHHHH
T ss_pred ccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC---------CCccccHHHHHHHHh
Confidence 5566666622 1111124578999999999998877522 47777666644 999999999999999
Q ss_pred hCCCCCCCCcccCCchhh
Q 002240 792 VKIHIDEESYLLRDTKKE 809 (948)
Q Consensus 792 aGk~VDEe~YeL~D~e~E 809 (948)
++.+++-++|.++-.+.|
T Consensus 83 ~nTLLnv~~YLvp~d~~~ 100 (106)
T 2l42_A 83 SNSLLNMENYLVPYDNLE 100 (106)
T ss_dssp STTSCGGGGCCBCSCC--
T ss_pred cCceecccccccCchhhc
Confidence 999999999998755444
No 70
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=95.81 E-value=0.01 Score=57.73 Aligned_cols=100 Identities=11% Similarity=0.093 Sum_probs=69.8
Q ss_pred CCCCCCceEEEeCCCCC--CHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhh----------
Q 002240 826 HPLLKDQRVLITPNIKP--SKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLE---------- 893 (948)
Q Consensus 826 ~~LF~G~rFyIT~~vkP--skd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk---------- 893 (948)
...|.|.++||.+.-.. -++.|.+|+...|++|..... +.-++||+...+......+++
T Consensus 8 ~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S---------~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~ 78 (133)
T 2dun_A 8 STRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACS---------SEATHVVMEETSAEEAVSWQERRMAAAPPGC 78 (133)
T ss_dssp SCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCC---------TTCCEEEESSCCHHHHHHHHHHHHHHSCTTC
T ss_pred ccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccC---------CCceEEEecCCCHHHHHHHHHHhhcccCcCC
Confidence 36899999999875333 267799999999999987653 234688886666655444441
Q ss_pred cCCeEechhHHHHHHhcCcc-CcccCccccccc--cccccccce
Q 002240 894 KGAAVYSSELLLNGMVTQKL-EYERHRLFVDNV--KRTRSTIWL 934 (948)
Q Consensus 894 ~Gi~VVSsEWILdSIL~QkL-E~E~y~Lf~d~v--~~trs~~w~ 934 (948)
.+..+++..||.+|+-..++ +.+.+.++.... ....++.||
T Consensus 79 ~~~~lLdisWltecm~~g~pV~~e~~~~l~~~~~~~~~~~~~~~ 122 (133)
T 2dun_A 79 TPPALLDISWLTESLGAGQPVPVECRHRLEVAGPRKGPLSPAWM 122 (133)
T ss_dssp CCCEEEEHHHHHHHHHHTSCCCCCTTTSCCCCSCCCSCCCCCCC
T ss_pred CCcEEeccHHHHHHHhcCCcCCcccceEeecccccCCCCccccc
Confidence 45789999999999997664 776665665433 223345554
No 71
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.54 E-value=0.0022 Score=76.16 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=0.0
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHHhC
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVK 793 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClkaG 793 (948)
.+.+..|+|||.... ....++.+|+.+||.|+.+++ ++++||++.- -+-|+-.|...|++||+.+|+.+.+..+
T Consensus 587 ~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~-~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 587 LLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSYLVVGEN-PGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeEEEECCC-CChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 478999999998865 456788999999999999998 7899999864 3689999999999999999999988765
No 72
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.19 E-value=0.0034 Score=74.65 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHHHHHHHhCCCCeecHHHHHHHHH
Q 002240 718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQ 791 (948)
Q Consensus 718 ~ms~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~KfL~AIA~GipIVSp~WLedClk 791 (948)
.+.+..|+|||....-....++.+|+.+||.|+.+++ ++++||++.- -+-|+-.|...|++||+.+|+.+.+.
T Consensus 597 ~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~-~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 597 PFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEA-AGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCC-CChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 4789999999987553456788999999999999998 7899999864 36899999999999999999988763
No 73
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=94.04 E-value=0.041 Score=56.93 Aligned_cols=82 Identities=11% Similarity=-0.025 Sum_probs=57.0
Q ss_pred CCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCC-chhccHHHhhcCCeEechhHHHH
Q 002240 828 LLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEE-DYEICEPFLEKGAAVYSSELLLN 906 (948)
Q Consensus 828 LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIIScee-D~~~~~~llk~Gi~VVSsEWILd 906 (948)
+=.+.+|++++..... +..+|+..||.|+..... -.+||+..- -...+...+..|++||+++||.+
T Consensus 5 ~~~~~~v~fSG~~~~~---~~~~i~~lGg~v~~~~~~----------~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~ 71 (220)
T 3l41_A 5 ASKRVYITFTGYDKKP---SIDNLKKLDMSITSNPSK----------CTHLIAPRILRTSKFLCSIPYGPCVVTMDWINS 71 (220)
T ss_dssp --CCEEEEECSCSSCC---CCGGGGGGTEEECSCTTT----------CSEEECSSCCCBHHHHHHGGGCCEEECHHHHHH
T ss_pred ccceEEEEEeccCCCC---CcchHhhcceeeccCchh----------hhhhhhhhHhhhcceeecCCCCCeEEEhHHHHh
Confidence 4457788998765432 499999999998875422 246776432 12233344568999999999999
Q ss_pred HHhcCc-cCcccCcccc
Q 002240 907 GMVTQK-LEYERHRLFV 922 (948)
Q Consensus 907 SIL~Qk-LE~E~y~Lf~ 922 (948)
|+-..+ ++.+.|.|..
T Consensus 72 ~~~~~~~l~e~~y~l~d 88 (220)
T 3l41_A 72 CLKTHEIVDEEPYLLND 88 (220)
T ss_dssp HHHHTSCCCSGGGBCCC
T ss_pred hhhhhhccccCccccCC
Confidence 999765 5888888753
No 74
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=89.74 E-value=0.062 Score=63.98 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHHH
Q 002240 827 PLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLN 906 (948)
Q Consensus 827 ~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWILd 906 (948)
..|.|++|+||+....++++++.+|+..||+|....... ..+||++++.-..+..+.+.|++|++.+|+++
T Consensus 586 ~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkk---------Td~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~ 656 (667)
T 1dgs_A 586 DLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRK---------TSYLVVGENPGSKLEKARALGVAVLTEEEFWR 656 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCC---------eeEEEECCCCChHHHHHHHCCCeEEeHHHHHH
Confidence 469999999999886689999999999999998775432 12455554433455566677999999999999
Q ss_pred HHhcCc
Q 002240 907 GMVTQK 912 (948)
Q Consensus 907 SIL~Qk 912 (948)
.|-...
T Consensus 657 ~l~~~~ 662 (667)
T 1dgs_A 657 FLKEKG 662 (667)
T ss_dssp ------
T ss_pred HHhcCC
Confidence 875443
No 75
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=88.34 E-value=0.09 Score=62.69 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCceEEEeCCCCC-CHHHHHHHHHhCCcEEEeccCcccccCCCCCCceEEEecCCchhccHHHhhcCCeEechhHHH
Q 002240 827 PLLKDQRVLITPNIKP-SKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLL 905 (948)
Q Consensus 827 ~LF~G~rFyIT~~vkP-skd~Lk~LIeaaGGkVVe~~prs~lKD~~~pd~lIIISceeD~~~~~~llk~Gi~VVSsEWIL 905 (948)
..|.|++|.||+.... ++++++.+|+..||+|....... ..+||+++..-..+..+.+.|++|++.+|++
T Consensus 596 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkk---------Td~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~ 666 (671)
T 2owo_A 596 SPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKK---------TDLVIAGEAAGSKLAKAQELGIEVIDEAEML 666 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCc---------eeEEEECCCCChHHHHHHHCCCcEEcHHHHH
Confidence 4699999999998854 79999999999999998775432 1245555433345555667799999999999
Q ss_pred HHH
Q 002240 906 NGM 908 (948)
Q Consensus 906 dSI 908 (948)
+.|
T Consensus 667 ~~l 669 (671)
T 2owo_A 667 RLL 669 (671)
T ss_dssp ---
T ss_pred HHh
Confidence 865
No 76
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=68.28 E-value=5.5 Score=38.12 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=28.4
Q ss_pred cCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEec
Q 002240 825 KHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVER 861 (948)
Q Consensus 825 k~~LF~G~rFyIT~~vkPskd~Lk~LIeaaGGkVVe~ 861 (948)
+..||.|++|.+...- ..+.|..+|..+||.+.-.
T Consensus 10 ~~~LF~GKtFvFLn~K--Q~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 10 RKSIFKDKVFLFLNAK--QYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp CSCSSTTCEEEESCSS--THHHHHHHHHHTTCEEECC
T ss_pred HHhhccCCEEEEeCHH--HHHHHHHHHHhcCceEEec
Confidence 4679999998876432 4788999999999998755
No 77
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=65.17 E-value=18 Score=35.39 Aligned_cols=57 Identities=16% Similarity=-0.041 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCEEeccCC-CceEEEeCCCCChH-------HHHHHHhCCCCeecHHHHHHHHHh
Q 002240 736 KQQKKILDRLGASEVSSIT-DATHFVTDIFVRTR-------NMLEAIASGKPVVTHLWLESIAQV 792 (948)
Q Consensus 736 k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~-------KfL~AIA~GipIVSp~WLedClka 792 (948)
+.+++.+..||+.|+.-+. ++||||+.+..-.. =+..|...|+.|=+.+=|..-++.
T Consensus 33 ~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 33 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHHh
Confidence 4567888999999999887 89999998643233 367788889999999888877776
No 78
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=53.66 E-value=44 Score=33.27 Aligned_cols=57 Identities=16% Similarity=-0.029 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCEEeccCC-CceEEEeCCCCCh-------HHHHHHHhCCCCeecHHHHHHHHHh
Q 002240 736 KQQKKILDRLGASEVSSIT-DATHFVTDIFVRT-------RNMLEAIASGKPVVTHLWLESIAQV 792 (948)
Q Consensus 736 k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT-------~KfL~AIA~GipIVSp~WLedClka 792 (948)
+.+++.+..||+.|+.-++ ++||||+.+..-. -=+..|...|+.|=+.+=|..-++.
T Consensus 50 ~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 50 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp HHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeecHHHHHHHHHh
Confidence 3456788999999999887 8999999863222 2356777889999999988877776
No 79
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=45.68 E-value=28 Score=34.92 Aligned_cols=78 Identities=15% Similarity=-0.000 Sum_probs=50.2
Q ss_pred cchhhhhccCC-CeEEEEcCCCCH-------H----HHHHHHHHHHHcCCEEeccCC-CceEEEeCCCCChHH-------
Q 002240 710 LKDLRKRRDMA-SIQVLFSHHLDE-------D----IIKQQKKILDRLGASEVSSIT-DATHFVTDIFVRTRN------- 769 (948)
Q Consensus 710 ~K~sr~rr~ms-~vrV~FSGf~de-------e----~~k~LKKiIk~LGGsVvddis-d~THLVA~k~~RT~K------- 769 (948)
|+..+ ++.|. .++|.|=+..++ . ..+.+++.+..||+.|+.-++ ++||||+.+..-..+
T Consensus 51 WQ~~W-Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Di 129 (160)
T 3qbz_A 51 WQTNW-KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDI 129 (160)
T ss_dssp HHHHH-HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSH
T ss_pred HHHHH-HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhH
Confidence 66664 34576 699999654332 0 012244567799999999988 899999986433333
Q ss_pred HHHHHhCCCCeecHHHHHH
Q 002240 770 MLEAIASGKPVVTHLWLES 788 (948)
Q Consensus 770 fL~AIA~GipIVSp~WLed 788 (948)
|-.|-..++-|=+++=+..
T Consensus 130 l~~A~~~~mKVW~yeK~~R 148 (160)
T 3qbz_A 130 LSRAKKNYMKVWSYEKAAR 148 (160)
T ss_dssp HHHHHHTTCEEEEHHHHHH
T ss_pred HHHHHHcCceecchHHHHH
Confidence 5555566777766554443
No 80
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=38.70 E-value=82 Score=29.54 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=43.3
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcC-CEE-eccCC---------CceEEEeCCC--CChHHHHHHHhCCCCeecHHH
Q 002240 721 SIQVLFSHHLDEDIIKQQKKILDRLG-ASE-VSSIT---------DATHFVTDIF--VRTRNMLEAIASGKPVVTHLW 785 (948)
Q Consensus 721 ~vrV~FSGf~dee~~k~LKKiIk~LG-GsV-vddis---------d~THLVA~k~--~RT~KfL~AIA~GipIVSp~W 785 (948)
.+++++-|-.+.+..+.+++.+..+| ..+ ...+. .|..+|.+.. .-..+++.|+++|+|||...+
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 147 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV 147 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESC
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCC
Confidence 57888878655333456777888886 233 22222 4677776542 126889999999999998754
No 81
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=30.77 E-value=1.3e+02 Score=27.33 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=41.0
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccC----------CCceEEEeCCC--CChHHHHHHHhCCC-Ceec
Q 002240 721 SIQVLFSHHLDEDIIKQQKKILDRLGASEVSSI----------TDATHFVTDIF--VRTRNMLEAIASGK-PVVT 782 (948)
Q Consensus 721 ~vrV~FSGf~dee~~k~LKKiIk~LGGsVvddi----------sd~THLVA~k~--~RT~KfL~AIA~Gi-pIVS 782 (948)
++++++-|..+. .+.+++.+..+|..+.-.+ ..|..+|.+.. .=..+++.|+++|+ |||.
T Consensus 32 ~~~l~i~G~g~~--~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~ 104 (166)
T 3qhp_A 32 DIVLLLKGKGPD--EKKIKLLAQKLGVKAEFGFVNSNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIA 104 (166)
T ss_dssp GEEEEEECCSTT--HHHHHHHHHHHTCEEECCCCCHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCcc--HHHHHHHHHHcCCeEEEeecCHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEe
Confidence 577888775433 2456778888886443222 24677777642 22689999999998 9998
No 82
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=25.73 E-value=1.6e+02 Score=30.84 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=44.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHcCCEEe-cc-C---------CCceEEEeCCC--CChHHHHHHHhCCCCeecHH
Q 002240 720 ASIQVLFSHHLDEDIIKQQKKILDRLGASEV-SS-I---------TDATHFVTDIF--VRTRNMLEAIASGKPVVTHL 784 (948)
Q Consensus 720 s~vrV~FSGf~dee~~k~LKKiIk~LGGsVv-dd-i---------sd~THLVA~k~--~RT~KfL~AIA~GipIVSp~ 784 (948)
.++++++-|-.+....+.++++++.+|..+. .. + ..|..+|.+.. .-..++++|+++|+|||...
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~ 361 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASA 361 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEES
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcC
Confidence 3688888886655434567888888874332 11 1 24777777642 22588999999999999865
No 83
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=20.07 E-value=2.4e+02 Score=28.86 Aligned_cols=59 Identities=17% Similarity=0.037 Sum_probs=39.6
Q ss_pred CeE-EEEcCCCCHHHHHHHHHHHHHcC---CEEeccCC-------CceEEEeCCCCChHHHHHHHhCCCCeecHH
Q 002240 721 SIQ-VLFSHHLDEDIIKQQKKILDRLG---ASEVSSIT-------DATHFVTDIFVRTRNMLEAIASGKPVVTHL 784 (948)
Q Consensus 721 ~vr-V~FSGf~dee~~k~LKKiIk~LG---GsVvddis-------d~THLVA~k~~RT~KfL~AIA~GipIVSp~ 784 (948)
+++ +++.|-.+. +.+++.+..+| ..+..... .|..+|++.. ...+++|+++|+|||...
T Consensus 212 ~~~~l~i~G~~~~---~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg--~~~~~EAma~G~Pvi~~~ 281 (364)
T 1f0k_A 212 SVTIWHQSGKGSQ---QSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG--ALTVSEIAAAGLPALFVP 281 (364)
T ss_dssp GEEEEEECCTTCH---HHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC--HHHHHHHHHHTCCEEECC
T ss_pred CcEEEEEcCCchH---HHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc--hHHHHHHHHhCCCEEEee
Confidence 466 456776542 34566777776 34443332 4778888753 899999999999999753
Done!