Your job contains 1 sequence.
>002241
MDMDMDMHIPLPEELELLEANYQDLDPPEQDPDPPEPVPPDSLPLEINGHKRPRSDTPKS
PIDVDEPQFDEKRSRIVDNDDEDWLRYSPPPPQARDDARVEVEEKFVSRYASEIDGDCLP
VTAPSGGDRVYVKISSSGVEERVKKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSS
EGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRST
SEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGNFRNSNNLEYENSNSKGIQDSWH
KKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDV
VQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKI
SKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESM
KTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKE
IFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLK
TVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRN
AFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKN
DLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYV
LALAVKQVLVHEVEKQRIMQVTIGKSEHLADGYKENMDLAGEEDSKTESAKTNNAAVSAK
LIEKSKSLPYSRQCNPSTSTVLTTLDSSRSSTASVKPKSSGDTKKSFRSSSSFFDRFRKL
SGKVSQDNDNAVQKATVERDSLPLLFKFNEGFTNAVKRPVRMRDFLLS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002241
(948 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1310473 - symbol:Chtf18 "CTF18, chromosome transmissi... 652 7.3e-85 4
UNIPROTKB|Q8WVB6 - symbol:CHTF18 "Chromosome transmission... 668 2.5e-83 3
ZFIN|ZDB-GENE-050522-508 - symbol:chtf18 "CTF18, chromoso... 754 1.5e-79 2
MGI|MGI:2384887 - symbol:Chtf18 "CTF18, chromosome transm... 639 1.8e-79 3
UNIPROTKB|E7EXA6 - symbol:CHTF18 "Chromosome transmission... 477 2.6e-73 4
UNIPROTKB|F1RG33 - symbol:CHTF18 "Uncharacterized protein... 469 3.8e-73 4
UNIPROTKB|F1PFW9 - symbol:CHTF18 "Uncharacterized protein... 606 5.3e-72 4
DICTYBASE|DDB_G0272758 - symbol:chtf18 "chromosome transm... 411 1.4e-71 4
UNIPROTKB|I3LC39 - symbol:CHTF18 "Uncharacterized protein... 453 4.4e-71 4
UNIPROTKB|E1B8Q4 - symbol:CHTF18 "Uncharacterized protein... 492 9.9e-66 3
UNIPROTKB|F1P1U8 - symbol:CHTF18 "Uncharacterized protein... 353 1.6e-60 4
FB|FBgn0015376 - symbol:cutlet "cutlet" species:7227 "Dro... 593 1.1e-57 2
POMBASE|SPBC902.02c - symbol:ctf18 "RFC-like complex subu... 455 5.2e-50 3
UNIPROTKB|F1NVV6 - symbol:CHTF18 "Uncharacterized protein... 415 1.8e-49 2
SGD|S000004683 - symbol:CTF18 "Subunit of a Ctf18 RFC-lik... 399 1.2e-43 3
WB|WBGene00010676 - symbol:K08F4.1 species:6239 "Caenorha... 197 9.3e-37 4
ASPGD|ASPL0000006457 - symbol:AN6694 species:162425 "Emer... 295 1.1e-33 5
GENEDB_PFALCIPARUM|PFA0545c - symbol:PFA0545c "replicatio... 179 4.2e-32 4
UNIPROTKB|Q8I233 - symbol:PFA_0545c "Replication factor c... 179 4.2e-32 4
UNIPROTKB|G4NIT3 - symbol:MGG_04123 "Chromosome transmiss... 294 3.3e-31 4
UNIPROTKB|F8WCC1 - symbol:CHTF18 "Chromosome transmission... 258 5.0e-29 2
CGD|CAL0003295 - symbol:CTF18 species:5476 "Candida albic... 231 2.4e-21 3
GENEDB_PFALCIPARUM|PFB0895c - symbol:PFB0895c "replicatio... 163 2.6e-21 4
UNIPROTKB|O96271 - symbol:PFB0895c "Replication factor C ... 163 2.6e-21 4
POMBASE|SPBC23E6.07c - symbol:rfc1 "DNA replication facto... 169 2.3e-18 3
DICTYBASE|DDB_G0285961 - symbol:rfc1 "replication factor ... 219 9.8e-18 3
ZFIN|ZDB-GENE-070410-99 - symbol:rfc1 "replication factor... 135 2.1e-16 4
UNIPROTKB|P35251 - symbol:RFC1 "Replication factor C subu... 143 1.2e-15 3
WB|WBGene00004337 - symbol:rfc-1 species:6239 "Caenorhabd... 136 3.1e-15 4
TAIR|locus:504956441 - symbol:RFC1 "replication factor C1... 217 8.5e-15 3
UNIPROTKB|F1NEP9 - symbol:RFC1 "Uncharacterized protein" ... 153 1.8e-14 3
UNIPROTKB|E1C339 - symbol:RFC1 "Uncharacterized protein" ... 153 1.8e-14 3
UNIPROTKB|F1S4I7 - symbol:RFC1 "Uncharacterized protein" ... 143 2.0e-14 3
RGD|620619 - symbol:Rfc1 "replication factor C (activator... 141 4.5e-14 3
SGD|S000005743 - symbol:RFC1 "Subunit of heteropentameric... 135 5.1e-14 3
MGI|MGI:97891 - symbol:Rfc1 "replication factor C (activa... 142 7.4e-14 4
UNIPROTKB|E2QW76 - symbol:RFC1 "Uncharacterized protein" ... 167 4.8e-11 2
ASPGD|ASPL0000007447 - symbol:uvsF species:162425 "Emeric... 156 2.0e-10 4
TAIR|locus:2204705 - symbol:AT1G77620 species:3702 "Arabi... 152 1.3e-09 3
UNIPROTKB|E2RCC4 - symbol:ATAD5 "Uncharacterized protein"... 106 4.6e-09 4
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 123 3.1e-08 3
UNIPROTKB|E1BCE1 - symbol:ATAD5 "Uncharacterized protein"... 100 2.0e-07 3
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 123 2.7e-07 4
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 114 5.4e-07 3
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 104 6.5e-07 3
ZFIN|ZDB-GENE-070912-20 - symbol:atad5a "ATPase family, A... 113 9.9e-07 3
FB|FBgn0004913 - symbol:Gnf1 "Germ line transcription fac... 149 1.3e-06 3
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 110 1.3e-06 3
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 110 1.3e-06 3
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 112 1.5e-06 3
ZFIN|ZDB-GENE-030131-338 - symbol:atad5b "ATPase family, ... 87 1.5e-06 3
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 112 2.2e-06 3
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 112 3.8e-06 3
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 113 4.2e-06 3
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 112 4.3e-06 3
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 112 5.4e-06 3
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 111 5.5e-06 3
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 108 5.7e-06 3
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 108 5.7e-06 3
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 110 6.0e-06 3
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 114 7.3e-06 3
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 106 9.3e-06 3
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 114 1.0e-05 3
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 99 1.3e-05 3
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 131 1.3e-05 2
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 110 1.6e-05 3
UNIPROTKB|F1NJA2 - symbol:F1NJA2 "Uncharacterized protein... 117 1.9e-05 2
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 102 4.0e-05 3
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 103 4.6e-05 3
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 103 4.6e-05 3
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 112 7.4e-05 3
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 112 8.2e-05 3
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 112 8.5e-05 3
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 110 0.00012 3
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 110 0.00013 3
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 107 0.00023 3
UNIPROTKB|J9NTZ2 - symbol:ATAD5 "Uncharacterized protein"... 100 0.00024 4
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 110 0.00024 3
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 111 0.00031 3
POMBASE|SPBC947.11c - symbol:elg1 "DNA replication factor... 132 0.00034 2
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 99 0.00041 2
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 100 0.00042 3
UNIPROTKB|F1MNE5 - symbol:FIGNL1 "Uncharacterized protein... 102 0.00043 2
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 100 0.00059 3
UNIPROTKB|Q96QE3 - symbol:ATAD5 "ATPase family AAA domain... 102 0.00094 2
>RGD|1310473 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity factor 18
homolog (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR010372 Pfam:PF00004 Pfam:PF06144 SMART:SM00382
RGD:1310473 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 EMBL:CH473948 GO:GO:0003887 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OrthoDB:EOG44QT0B
GO:GO:0009360 OMA:TMLAYNL IPI:IPI00369267 RefSeq:NP_001099243.1
UniGene:Rn.53402 Ensembl:ENSRNOT00000026139 GeneID:287146
KEGG:rno:287146 UCSC:RGD:1310473 NextBio:625609 Uniprot:D4AC99
Length = 968
Score = 652 (234.6 bits), Expect = 7.3e-85, Sum P(4) = 7.3e-85
Identities = 166/453 (36%), Positives = 237/453 (52%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM- 367
P QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM SV+
Sbjct: 358 PRQKVALLCGPPGLGKTTLAHVVARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLG 417
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXX 427
A RP CLVIDEIDGA A+ V+L +++ + + A
Sbjct: 418 AGGRPNCLVIDEIDGA---PTAAINVLLSILNRKGPQEAEQGGTAVA---AAGGRRRRAE 471
Query: 428 XASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSV-SRVVSRLKHICNNESMKTSSIA 486
L RP+ICICND + P+LR L+Q A + + + P++ SR+V RL+ I M++ A
Sbjct: 472 GGLLTRPIICICNDQFTPSLRQLKQQALL-LHVPPTLPSRLVQRLQEISLQHGMRSDPGA 530
Query: 487 LTTLAEYTECDIRSCLNTLQFL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
L L E T+ DIR+C+NTLQFL + + L+V D+ + VG KD + F +W+E+FQ
Sbjct: 531 LAALCEKTDNDIRACINTLQFLYGRGQRELSVKDVQTTHVGLKDQRKGLFSVWQEVFQLP 590
Query: 546 KTKR--------------LRXXXXXXXXXXXEFDFLHSL--ISNRGDYDVIFDGIHENIL 589
+ +R L F H L ++ G+++ + G+ +N L
Sbjct: 591 RAQRRLVGQDLMLPTHALLLNDSDKGSLTLASQRFYHILRVTTSAGEHEKVVQGLFDNFL 650
Query: 590 QLQYHDPVMLKTVKC-LDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPN 648
+L+ D L TV C LD L DL+ Q Q L Y P L H L + P
Sbjct: 651 RLRLRDS-SLGTVCCALDWLAFDDLLEQAAHHGQSFQLLRYLPFLPAAFHVLFASSHVPR 709
Query: 649 LEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRP 708
+ +P S Q + + + ++ S + P + ++LV D++ LL +LSP LRP
Sbjct: 710 ITFPSSQQEAQTRLSQTRNHIQTLVSGMAPATRSRATPQALVLDTLCLLLDVLSPK-LRP 768
Query: 709 VALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKS 741
V+ L SA+EK L+ LV M++YSLTY ++
Sbjct: 769 VSTQLYSAREKQQLSSLVGTMLAYSLTYHQERT 801
Score = 138 (53.6 bits), Expect = 7.3e-85, Sum P(4) = 7.3e-85
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 189 PEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSE 236
P + LWVD++AP +TELLSD+ TNR +L WLK WD VFG E
Sbjct: 265 PGQETAQHCLWVDEFAPQHYTELLSDDFTNRCLLKWLKLWDLVVFGHE 312
Score = 66 (28.3 bits), Expect = 7.3e-85, Sum P(4) = 7.3e-85
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 926 FKFNEGFTNAVKRPVRMRDFL 946
F+FNEG +NAV+R + +RD L
Sbjct: 948 FRFNEGVSNAVRRSLYIRDLL 968
Score = 50 (22.7 bits), Expect = 7.3e-85, Sum P(4) = 7.3e-85
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 116 GDCLPVTAPSGGDRVYVKISSSGVEERVKKLDVRAHSNSLTSEP-IDVLLQKVEQEAFNK 174
GD +P P+G S + V++ D A S+ + P +DV+ +++ E +
Sbjct: 59 GDIVPRPCPAGSSGN----DSRNTRKNVRR-DQPAPSSPMVKRPRLDVV-KRLNFEPDKE 112
Query: 175 ALNSSSEGQSDRSLPEKPVVHEQLW 199
L D + P P V ++W
Sbjct: 113 ELLYPDSPPGDITPPPSPEVFPEMW 137
>UNIPROTKB|Q8WVB6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260
EMBL:CH471112 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 EMBL:AK024476 EMBL:AL031033 EMBL:BC006278
EMBL:BC006437 EMBL:BC018184 IPI:IPI00414657 IPI:IPI00872454
IPI:IPI00895945 RefSeq:NP_071375.1 UniGene:Hs.153850
ProteinModelPortal:Q8WVB6 SMR:Q8WVB6 IntAct:Q8WVB6 STRING:Q8WVB6
DMDM:74751544 PaxDb:Q8WVB6 PRIDE:Q8WVB6 Ensembl:ENST00000262315
Ensembl:ENST00000455171 GeneID:63922 KEGG:hsa:63922 UCSC:uc002cke.4
UCSC:uc002ckf.4 CTD:63922 GeneCards:GC16P000838 HGNC:HGNC:18435
MIM:613201 neXtProt:NX_Q8WVB6 PharmGKB:PA134908713
HOVERGEN:HBG062099 KO:K11269 GenomeRNAi:63922 NextBio:65649
ArrayExpress:Q8WVB6 Bgee:Q8WVB6 CleanEx:HS_CHTF18
Genevestigator:Q8WVB6 Uniprot:Q8WVB6
Length = 975
Score = 668 (240.2 bits), Expect = 2.5e-83, Sum P(3) = 2.5e-83
Identities = 162/452 (35%), Positives = 236/452 (52%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM- 367
P+QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM SV+
Sbjct: 365 PKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLG 424
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXX 427
A +P CLVIDEIDGA A+ V+L +++ + + A P
Sbjct: 425 AGGKPNCLVIDEIDGA---PVAAINVLLSILNRKGPQEVGPQGPAV---PSGGGRRRRAE 478
Query: 428 XASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIAL 487
L+RP+ICICND +AP+LR L+Q A + F SR+V RL+ + + M+ L
Sbjct: 479 GGLLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVL 538
Query: 488 TTLAEYTECDIRSCLNTLQFL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRK 546
L E T+ DIR+C+NTLQFL + + L+V D+ + VG KD R F +W+E+FQ +
Sbjct: 539 AALCEKTDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPR 598
Query: 547 TKRLRX-----------------XXXXXXXXXXEFDFLHSLISNRGDYDVIFDGIHENIL 589
+R R + LH+ S G+++ + G+ +N L
Sbjct: 599 AQRRRVGQDPALPADTLLLGDGDAGSLTSASQRFYRVLHAAAS-AGEHEKVVQGLFDNFL 657
Query: 590 QLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNL 649
+L+ D + LD L DL+ +Q L Y P L + H L + P +
Sbjct: 658 RLRLRDSSLGAVCVALDWLAFDDLLAGAAHHSQSFQLLRYPPFLPVAFHVLFASSHTPRI 717
Query: 650 EWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPV 709
+P S Q +N + ++ ++ S I P + ++L+ D++ LL IL+P LRPV
Sbjct: 718 TFPSSQQEAQNRMSQMRNLIQTLVSGIAPATRSRATPQALLLDALCLLLDILAPK-LRPV 776
Query: 710 ALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKS 741
+ L S +EK LA LV M++YSLTY+ ++
Sbjct: 777 STQLYSTREKQQLASLVGTMLAYSLTYRQERT 808
Score = 140 (54.3 bits), Expect = 2.5e-83, Sum P(3) = 2.5e-83
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 163 LLQKVEQEAFNKALNSSSEGQSDRSLP-----EKPVVHEQ-----LWVDKYAPNSFTELL 212
LLQ E + + L+S G+ + + P E+P + LWVD++AP +TELL
Sbjct: 238 LLQ--EAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSHCLWVDEFAPRHYTELL 295
Query: 213 SDEQTNREVLLWLKQWDSCVFGSE 236
SD+ TNR +L WLK WD VFG E
Sbjct: 296 SDDFTNRCLLKWLKLWDLVVFGHE 319
Score = 68 (29.0 bits), Expect = 2.5e-83, Sum P(3) = 2.5e-83
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 902 GKVSQDNDNAVQKATVERDSLPLLFKFNEGFTNAVKRPVRMRDFL 946
G + + D+ ++ + F+FNEG +NAV+R + +RD L
Sbjct: 931 GDTAPEQDSVERRMGTAVGRSEVWFRFNEGVSNAVRRSLYIRDLL 975
>ZFIN|ZDB-GENE-050522-508 [details] [associations]
symbol:chtf18 "CTF18, chromosome transmission
fidelity factor 18 homolog (S. cerevisiae)" species:7955 "Danio
rerio" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-050522-508 GO:GO:0005524 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:BX323038
EMBL:BX004779 IPI:IPI00810052 RefSeq:NP_001103572.2
UniGene:Dr.83128 ProteinModelPortal:F1QF60
Ensembl:ENSDART00000092058 GeneID:554366 KEGG:dre:554366
NextBio:20880755 ArrayExpress:F1QF60 Bgee:F1QF60 Uniprot:F1QF60
Length = 957
Score = 754 (270.5 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 227/733 (30%), Positives = 354/733 (48%)
Query: 116 GDCLPVTAPSGGDRVYVKISSSGVEERVKKLDVRAHSNSLT-----SEPIDVLLQKVEQE 170
GD + VT S G+RVY+ VE K D RA NSL + PI+VL +++ +
Sbjct: 178 GDYITVT-DSMGNRVYLN-KKEDVE---KTPDPRAFRNSLNGLGLLAVPIEVLKEQIAER 232
Query: 171 AFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDS 230
+ + E Q L + + + L ++ + DE ++R LW+ Q+
Sbjct: 233 RHRQVVE---ESQRLTELMKSGIDSDLLAEEQTDSGVDGDSGEDEASSR---LWVDQFSP 286
Query: 231 CVFGSEIRS--TSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGNFRXXXXXXXX 288
+ + T+ +L L+ T+ +++ + R N + N
Sbjct: 287 QHYTDLLSDDFTNRCLLKWLKLWDTVVFGRERKSRPVPVEARSNFTNAQNQNQAQRFKTK 346
Query: 289 XXXXKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDR 348
+ I ++ + + P+ KV LL GPPGLGKTTLAH+ AKH GY+VVE+NASDDR
Sbjct: 347 SQMTEEILEAELDQYKR---PKFKVALLSGPPGLGKTTLAHIIAKHAGYNVVEINASDDR 403
Query: 349 SSSTIENKILDVVQMNSVM-ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTA 407
S+ + +I QM SV+ A+ +P CL+IDEIDGA A+ ++L ++ RK +
Sbjct: 404 SAELFQKRIDTATQMKSVLGANEKPNCLIIDEIDGAPA---AAINILLATLN--RKDS-- 456
Query: 408 KENVAKEDQPEXXXXXXXXXXASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRV 467
K+ E+ + LLRP+ICICNDLY PALR LRQ A + VF Q SR+
Sbjct: 457 KDG---EETGVNALKKKKKKQSVLLRPIICICNDLYVPALRPLRQQAFLLVFPQTLPSRL 513
Query: 468 VSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVG 526
RL I + MK + L L E T+ DIRSC+NTLQFL + ++ L+ + S VG
Sbjct: 514 AQRLAEISRRQGMKADTGTLMALCEKTDNDIRSCINTLQFLHSRGQKHLDQRSVSSMCVG 573
Query: 527 RKDMSRSAFDIWKEIFQKRKTKRLRXXXXXXXXX--------XXEFDFLHSLISNRGDYD 578
KD ++ F +W+EIFQ + KR R + L+S+ G+++
Sbjct: 574 LKDQNKGLFSVWQEIFQLPRLKRKRIGGDPFSGYDELGPKEGAQRLQHILHLVSSTGEHE 633
Query: 579 VIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVH 638
+ G+++N L ++ DP ML LD L SDL+++ ++ Q L Y P L H
Sbjct: 634 KLTQGLYDNFLSMKLKDPGMLGVCSGLDWLCFSDLLNECVLHGQNYSLMRYFPFLPAAFH 693
Query: 639 RLVSQIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLL 698
+L + P + +P S+ + + + IPP I + SL D +S LL
Sbjct: 694 QLYAATSVPRINYPHSHYEAFTKTQHIRNALLAMLNDIPPAIQSRVCMSSLCLDILSLLL 753
Query: 699 HILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVST 758
++SP LRPV L S +EK L L+ M++Y+LTY+ ++ P E + T
Sbjct: 754 ELISPK-LRPVNPQLYSTREKQQLYDLIDTMINYNLTYRQDRT-P-------EGQY---T 801
Query: 759 LSFDPPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRIMQVTIGKSEHLADGYKENMD 818
+P I + + + G L VKQ++ E E +R+ +V +++ + K
Sbjct: 802 YVLEPNIEDVVNYPGLPPRRQ-LTYQVKQLIARETELERMRRVE--RAQQSRNPQKMETV 858
Query: 819 LAGEEDSKTESAK 831
+E+ KTE K
Sbjct: 859 NKNQEEKKTEVKK 871
Score = 64 (27.6 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 926 FKFNEGFTNAVKRPVRMRDFL 946
F+FNEG +NAV+R V +R+ L
Sbjct: 937 FRFNEGVSNAVRRNVYIRELL 957
>MGI|MGI:2384887 [details] [associations]
symbol:Chtf18 "CTF18, chromosome transmission fidelity
factor 18" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
MGI:MGI:2384887 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0007049 GO:GO:0017111 HSSP:P38630
eggNOG:COG0470 CTD:63922 HOVERGEN:HBG062099 KO:K11269 EMBL:AK077947
EMBL:BC024142 IPI:IPI00153429 RefSeq:NP_663384.2 UniGene:Mm.102540
ProteinModelPortal:Q8BIW9 SMR:Q8BIW9 STRING:Q8BIW9
PhosphoSite:Q8BIW9 PaxDb:Q8BIW9 PRIDE:Q8BIW9
Ensembl:ENSMUST00000048054 GeneID:214901 KEGG:mmu:214901
UCSC:uc008bbk.2 GeneTree:ENSGT00550000075029 HOGENOM:HOG000067805
InParanoid:Q8BIW9 OrthoDB:EOG44QT0B NextBio:374509 Bgee:Q8BIW9
Genevestigator:Q8BIW9 Uniprot:Q8BIW9
Length = 969
Score = 639 (230.0 bits), Expect = 1.8e-79, Sum P(3) = 1.8e-79
Identities = 164/453 (36%), Positives = 236/453 (52%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA 368
P QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM SV+
Sbjct: 360 PRQKVALLCGPPGLGKTTLAHVVARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLG 419
Query: 369 -DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXX 427
RP CLVIDEIDGA A+ V+L +++ + + A
Sbjct: 420 VGGRPNCLVIDEIDGA---PTAAINVLLGILNRKGPQEADQGGTAVA----AGGRRRRAE 472
Query: 428 XASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSV-SRVVSRLKHICNNESMKTSSIA 486
L RP+ICICND + P+LR L+Q A + + + P++ SR+V RL+ I M++ A
Sbjct: 473 GGLLTRPIICICNDQFTPSLRQLKQQALL-LHVPPTLPSRLVQRLQEISLQHGMRSDPGA 531
Query: 487 LTTLAEYTECDIRSCLNTLQFL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
L L E T+ DIR+C+NTLQFL + + L+V + + VG KD + F +W+E+FQ
Sbjct: 532 LVALCEKTDNDIRACINTLQFLYGRGRRELSVKAVQTTHVGLKDQRKGLFSVWQEVFQLP 591
Query: 546 KTKR--------------LRXXXXXXXXXXXEFDFLHSL--ISNRGDYDVIFDGIHENIL 589
+T+R L F H L ++ G+++ + G+ +N L
Sbjct: 592 RTQRRIVGQDLMLPAHALLLSNGDKGSLTLASQRFYHILRVTTSAGEHEKVVQGLFDNFL 651
Query: 590 QLQYHDPVMLKTVKC-LDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPN 648
+L+ D L TV C LD L DL+ Q R Q L Y P + H L + P
Sbjct: 652 RLRLRDS-SLSTVCCALDWLAFDDLLEQAAHRGQSFQLLCYLPFVPAAFHVLFASSHVPR 710
Query: 649 LEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRP 708
+ +P S Q + + + ++ S + P + ++LV D++ LL +L+P LRP
Sbjct: 711 ITFPSSQQEAQTRMSQTRNHIQTLVSGMAPTTRSRATPQALVLDTLCLLLDVLAPK-LRP 769
Query: 709 VALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKS 741
V+ L SA EK L+ LV M++YSLTY ++
Sbjct: 770 VSTQLYSAHEKQQLSCLVGTMLAYSLTYHQERT 802
Score = 139 (54.0 bits), Expect = 1.8e-79, Sum P(3) = 1.8e-79
Identities = 28/57 (49%), Positives = 36/57 (63%)
Query: 181 EGQ-SDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSE 236
EG ++ P + LWVD++AP +TELLSD+ TNR +L WLK WD VFG E
Sbjct: 258 EGPPAEEPAPGQNTAQHCLWVDEFAPQHYTELLSDDFTNRCLLKWLKLWDLVVFGRE 314
Score = 66 (28.3 bits), Expect = 1.8e-79, Sum P(3) = 1.8e-79
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 926 FKFNEGFTNAVKRPVRMRDFL 946
F+FNEG +NAV+R + +RD L
Sbjct: 949 FRFNEGVSNAVRRSLYIRDLL 969
>UNIPROTKB|E7EXA6 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00178203
ProteinModelPortal:E7EXA6 SMR:E7EXA6 PRIDE:E7EXA6
Ensembl:ENST00000317063 OMA:TMLAYNL PhylomeDB:E7EXA6
ArrayExpress:E7EXA6 Bgee:E7EXA6 Uniprot:E7EXA6
Length = 1184
Score = 477 (173.0 bits), Expect = 2.6e-73, Sum P(4) = 2.6e-73
Identities = 108/243 (44%), Positives = 143/243 (58%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM- 367
P+QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM SV+
Sbjct: 560 PKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLG 619
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXX 427
A +P CLVIDEIDGA A+ V+L +++ + + A P
Sbjct: 620 AGGKPNCLVIDEIDGA---PVAAINVLLSILNRKGPQEVGPQGPAV---PSGGGRRRRAE 673
Query: 428 XASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIAL 487
L+RP+ICICND +AP+LR L+Q A + F SR+V RL+ E M+ L
Sbjct: 674 GGLLMRPIICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQ-----EGMRADPGVL 728
Query: 488 TTLAEYTECDIRSCLNTLQFL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRK 546
L E T+ DIR+C+NTLQFL + + L+V D+ + VG KD R F +W+E+FQ +
Sbjct: 729 AALCEKTDNDIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPR 788
Query: 547 TKR 549
+R
Sbjct: 789 AQR 791
Score = 224 (83.9 bits), Expect = 2.6e-73, Sum P(4) = 2.6e-73
Identities = 54/175 (30%), Positives = 90/175 (51%)
Query: 567 LHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPL 626
LH+ S G+++ + G+ +N L+L+ D + LD L DL+ +Q L
Sbjct: 845 LHAAAS-AGEHEKVVQGLFDNFLRLRLRDSSLGAVCVALDWLAFDDLLAGAAHHSQSFQL 903
Query: 627 YVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLST 686
Y P L + H L + P + +P S Q +N + ++ ++ S I P +
Sbjct: 904 LRYPPFLPVAFHVLFASSHTPRITFPSSQQEAQNRMSQMRNLIQTLVSGIAPATRSRATP 963
Query: 687 ESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKS 741
++L+ D++ LL IL+P LRPV+ L S +EK LA LV M++YSLTY+ ++
Sbjct: 964 QALLLDALCLLLDILAPK-LRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERT 1017
Score = 143 (55.4 bits), Expect = 2.6e-73, Sum P(4) = 2.6e-73
Identities = 42/126 (33%), Positives = 63/126 (50%)
Query: 111 ASEIDGDCLPVTAPSGGDRVYVKISSSGVEERVKKLDVRAHSNSLTSEPIDVLLQKVEQE 170
A + G L V GG + +S + ++++V + R + D L + E+E
Sbjct: 395 APGVQGSLLHVPWRGGGQLDLLGVSLASLKKQVDG-ERRERLLQEAQKLSDTLHRSGEEE 453
Query: 171 AFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDS 230
A + L + E +D + LWVD++AP +TELLSD+ TNR +L WLK WD
Sbjct: 454 AA-QPLGAPEEEPTDG----QDASSHCLWVDEFAPRHYTELLSDDFTNRCLLKWLKLWDL 508
Query: 231 CVFGSE 236
VFG E
Sbjct: 509 VVFGHE 514
Score = 68 (29.0 bits), Expect = 2.6e-73, Sum P(4) = 2.6e-73
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 902 GKVSQDNDNAVQKATVERDSLPLLFKFNEGFTNAVKRPVRMRDFL 946
G + + D+ ++ + F+FNEG +NAV+R + +RD L
Sbjct: 1140 GDTAPEQDSVERRMGTAVGRSEVWFRFNEGVSNAVRRSLYIRDLL 1184
Score = 41 (19.5 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 430 SLLRPVICICNDLYAPALR 448
+LL +C+ D+ AP LR
Sbjct: 965 ALLLDALCLLLDILAPKLR 983
>UNIPROTKB|F1RG33 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR010372
Pfam:PF00004 Pfam:PF06144 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887
GeneTree:ENSGT00550000075029 GO:GO:0009360 EMBL:FP016225
Ensembl:ENSSSCT00000008778 Uniprot:F1RG33
Length = 978
Score = 469 (170.2 bits), Expect = 3.8e-73, Sum P(4) = 3.8e-73
Identities = 107/248 (43%), Positives = 141/248 (56%)
Query: 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNS 365
+G P QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM S
Sbjct: 363 SGRPRQKVALLCGPPGLGKTTLAHVIARHAGYCVVEMNASDDRSPEAFRTRIEAATQMES 422
Query: 366 VMADS-RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXX 424
V+ RP CLVIDEIDGA A+ V+L ++ +RK E A
Sbjct: 423 VLGSGGRPNCLVIDEIDGA---PTAAINVLLSVL--DRKGPQEAEPGAPA-MAAGGGRRR 476
Query: 425 XXXXASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSS 484
L+RP+ICICND +AP+LR L+ A + F SR+ RL+ I M+
Sbjct: 477 RAEGGLLMRPIICICNDQFAPSLRQLKPQALLLHFPPTLPSRLTQRLQEISQQRGMQADP 536
Query: 485 IALTTLAEYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543
AL L E T+ DIR+C+N LQFL + + L++ + + VG KD + F +W+E+FQ
Sbjct: 537 GALAALCEKTDNDIRACINALQFLHGRGRRKLSIQVVQTTRVGLKDQRKGLFSVWQEVFQ 596
Query: 544 KRKTKRLR 551
+ +R R
Sbjct: 597 LPRAQRRR 604
Score = 227 (85.0 bits), Expect = 3.8e-73, Sum P(4) = 3.8e-73
Identities = 67/238 (28%), Positives = 110/238 (46%)
Query: 564 FDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQ 623
+ LH+ S G+++ + G+ +N L+L+ D + LD L DL+ + Q
Sbjct: 642 YHILHAAAS-AGEHEKVVQGLFDNFLRLRLRDSSLGTVCVALDWLAFDDLLGRAAHHGQN 700
Query: 624 MPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRH 683
L Y P L H L + P + +P S Q +N ++ K+ S I P
Sbjct: 701 FQLLRYLPFLPPAFHLLFATSHVPRIAFPSSQQEAQNRMNRTQNLIKTLVSGITPATRSR 760
Query: 684 LSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDP 743
+ ++LV D++ LL IL+P LRPV+ L S +EK LA LV M++YSLTY+ ++
Sbjct: 761 AAPQALVLDTLCLLLDILAPK-LRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERTPD 819
Query: 744 LLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRIMQV 801
G V +P + E F + L KQ++ E+E +++ +V
Sbjct: 820 -----GQYVYR------LEPNVEEVCRFPELPARK-PLTYQAKQLIAREIEVEKMRRV 865
Score = 146 (56.5 bits), Expect = 3.8e-73, Sum P(4) = 3.8e-73
Identities = 34/106 (32%), Positives = 57/106 (53%)
Query: 134 ISSSGVEERV---KKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSSEGQSDRSLPE 190
+S + ++E+V ++ + + L+ + +KVE+EA + ++ P
Sbjct: 221 VSFTSLKEKVDSERRQRLLKEAQQLSDTLCSLRAEKVEEEA------QPTGAPAEEPAPH 274
Query: 191 KPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSE 236
+ LWVD++AP +TELLSD+ TNR +L WLK WD VFG +
Sbjct: 275 QDASEHCLWVDEFAPQRYTELLSDDFTNRCLLKWLKLWDPVVFGQD 320
Score = 62 (26.9 bits), Expect = 3.8e-73, Sum P(4) = 3.8e-73
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 926 FKFNEGFTNAVKRPVRMRDFL 946
F+F EG +NAV+R V +RD L
Sbjct: 958 FRFKEGVSNAVRRGVYIRDLL 978
Score = 38 (18.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 430 SLLRPVICICNDLYAPALR 448
+L+ +C+ D+ AP LR
Sbjct: 765 ALVLDTLCLLLDILAPKLR 783
>UNIPROTKB|F1PFW9 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000075029
OMA:TMLAYNL EMBL:AAEX03004670 Ensembl:ENSCAFT00000031175
Uniprot:F1PFW9
Length = 1140
Score = 606 (218.4 bits), Expect = 5.3e-72, Sum P(4) = 5.3e-72
Identities = 171/516 (33%), Positives = 249/516 (48%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM- 367
P QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASDDRS I QM SV+
Sbjct: 522 PRQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEAFRTCIEAATQMESVLG 581
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXX 427
A +P CLVIDEIDGA A+ V+L ++ +RK E+ P
Sbjct: 582 AGGKPNCLVIDEIDGA---PVAAINVLLNVL--DRKGPQDAES-GGPGVPTSGGRRHRAD 635
Query: 428 XASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIAL 487
L+RP+ICICND + P+LR LRQ A + F SR+ RL+ E M+ AL
Sbjct: 636 GGLLMRPIICICNDQFVPSLRQLRQQAFLLHFPPILSSRLTQRLQ-----EGMQADPGAL 690
Query: 488 TTLAEYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRK 546
L E T+ DIR+C+NTLQFL + + L+V + + VG KD + F +W+EIFQ +
Sbjct: 691 AALCEKTDNDIRACINTLQFLHGRGRRELSVRAVQTTRVGLKDQRKGLFSVWQEIFQLPR 750
Query: 547 TKRLRXXXXXXXX---------------XXXEFDF------LHSLI---SNRGDYDVIFD 582
+R R E LH ++ ++ G+++ +
Sbjct: 751 AQRQRWAQDPSSAPHMLLLGDAHLGPGPRAAEAPLTTAAQRLHRILHVAASAGEHEKVVQ 810
Query: 583 GIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVS 642
G+ +N L+L+ D + LD L DL+ Q L Y P L H L +
Sbjct: 811 GLFDNFLRLRLRDSSLGTVCTALDWLAFDDLLTCTAHHGQSFQLLRYLPFLPAAFHLLFA 870
Query: 643 QIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILS 702
P + +P S Q ++ ++ + + I P + ++L+ D++ +L IL+
Sbjct: 871 SSHVPRIAFPSSQQEAQSRTSRTQNLIHTLVAGIAPATRSRATPQALILDALCLILDILA 930
Query: 703 PPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLSFD 762
P LRPV+ L S +EK LA LV M++YSLTY+ + G + +
Sbjct: 931 PK-LRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERRPD-----GQYIYR------LE 978
Query: 763 PPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRI 798
P + E F + L KQ++ HE+E +++
Sbjct: 979 PNVEEVCRFPELPARK-PLTYQAKQLIAHEIEMEKM 1013
Score = 138 (53.6 bits), Expect = 5.3e-72, Sum P(4) = 5.3e-72
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 182 GQSDRSLPEKPVVHEQ-LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSE 236
G + L P + LWVD++AP +TELLSD+ TNR +L WLK WD VFG E
Sbjct: 421 GAPEEELANSPDGSQHCLWVDEFAPQYYTELLSDDFTNRCLLKWLKLWDPVVFGRE 476
Score = 65 (27.9 bits), Expect = 5.3e-72, Sum P(4) = 5.3e-72
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 902 GKVSQDNDNAVQKATVERDSLPLLFKFNEGFTNAVKRPVRMRDFL 946
G V+ + D A ++ + F+F EG +NAV+R V +RD L
Sbjct: 1096 GAVAPETDVAERRIGRAVGRSDVWFRFKEGVSNAVRRRVPVRDLL 1140
Score = 43 (20.2 bits), Expect = 5.3e-72, Sum P(4) = 5.3e-72
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 84 WLRYSPPPPQA-RD 96
WL++ PP P+A RD
Sbjct: 50 WLQHPPPRPRAPRD 63
Score = 40 (19.1 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 681 SRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTK 740
S+ S E ++ED + L P + L K LA +++ YS+ N
Sbjct: 499 SKWKSHEQVLEDMLEADLDPSRRPRQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNAS 558
Query: 741 SD 742
D
Sbjct: 559 DD 560
>DICTYBASE|DDB_G0272758 [details] [associations]
symbol:chtf18 "chromosome transmission fidelity
protein 18 homolog" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 dictyBase:DDB_G0272758 GO:GO:0005524
EMBL:AAFI02000008 GO:GO:0017111 eggNOG:COG0470 KO:K11269
RefSeq:XP_001134625.1 ProteinModelPortal:Q86L47
EnsemblProtists:DDB0232234 GeneID:8618623 KEGG:ddi:DDB_G0272758
InParanoid:Q86L47 OMA:QPEGESM ProtClustDB:CLSZ2497422
Uniprot:Q86L47
Length = 937
Score = 411 (149.7 bits), Expect = 1.4e-71, Sum P(4) = 1.4e-71
Identities = 103/303 (33%), Positives = 161/303 (53%)
Query: 121 VTAPSGG--DRVYVKISSSGVEERVKKLDVRAHSNSLTSEPIDVLLQKVEQ-EAFN-KA- 175
+T+ SG RV +S + + K ++ N L +PI+ +L+++E E+ K+
Sbjct: 78 ITSFSGHRITRVVKSQNSENISTSLSKSNILF--NDLLKKPINEILEEIENIESLKLKSE 135
Query: 176 --LNSSS-EGQSDRSLPEKPVVHE--QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDS 230
NS+S + + E+ V ++ +LWVDKYAP SF +LLSD N EVL WL+ WD
Sbjct: 136 LIKNSNSLTPTKSKGVSEEIVKNKDNRLWVDKYAPTSFHDLLSDTTMNLEVLNWLELWDH 195
Query: 231 CVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGN--F-RXXXXXXX 287
VF + S + + S ++ + N N+++ N N S G F +
Sbjct: 196 IVFDKPL-SKNLIMPSTFNNNNNNNNNNNNNNNNNNNNNNKNSSSTGGGYFNKFNSKFTT 254
Query: 288 XXXXXKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347
+ Q+ + G P K++LL G PGLGKTTLAHV AK Y+ VE+NAS+D
Sbjct: 255 SSNSNQQHQNQGQYLLQEDGTPIAKIILLTGGPGLGKTTLAHVLAKQANYNPVEINASED 314
Query: 348 RSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTA 407
RS E+K+L ++M S+ D++P CL+IDEIDG G G +E+++K++ K
Sbjct: 315 RSGEAFESKLLSAIEMKSLFNDNKPNCLIIDEIDGISGRDNGPIELLIKLIDNSLKLGNH 374
Query: 408 KEN 410
K++
Sbjct: 375 KKS 377
Score = 356 (130.4 bits), Expect = 1.4e-71, Sum P(4) = 1.4e-71
Identities = 104/330 (31%), Positives = 166/330 (50%)
Query: 431 LLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTL 490
LLRP+ICICND Y P+LR LRQ A V F P + ++SRLK IC+NE + + L L
Sbjct: 434 LLRPIICICNDQYVPSLRKLRQKAMVFDFQAPKKNDLLSRLKVICSNEGLSATDATLNAL 493
Query: 491 AEYTECDIRSCLNTLQFLDKKKEILN---VMDIGSQVVGRKDMSRSAFDIWKEIFQKRK- 546
+ T DIR+C+N+LQF+ K +LN + + + V+G+KDM + +IW IF+
Sbjct: 494 IDMTGSDIRACINSLQFIKSKTTVLNSELLKNKSNIVIGQKDMEKGLVEIWNNIFKSSSI 553
Query: 547 ---TKRLRXXXXXXXXXXXEFDFLHSLIS---NRGDYDV----IFDGIHENILQLQYHDP 596
T +L D ++S+ + N+ D+ + D + + + + +
Sbjct: 554 TSSTNKLSKYSNTISSSSSSIDSINSISNDYLNQLDFQIGACNQVDKLIDGVYENYLTNM 613
Query: 597 VMLKTV-KCLDCLGNSDLMHQYIMRTQQMPLYV---YQPPLAITVHRLVSQIQKPNLEWP 652
T+ K +DCL D M + Q + ++ Y+ + + +H+ S P ++ P
Sbjct: 614 SSDYTMQKTMDCL---DWM---VFGDQMLNVHADEKYRSLVPLAIHQRCSTYS-PKIQLP 666
Query: 653 KSYQRYRNAFMEKMD--IFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVA 710
S Y N +K + I S++S +P I +L+ + V D I P + ILS P +R
Sbjct: 667 HS--DYDNFIKKKSNSNIKDSFYSDLPATIYSYLTKKCFVIDFIYPFVDILSLP-VRVTN 723
Query: 711 LHLLSAKEKNDLAQLVSAMVSYSLTYKNTK 740
+ L S EK +L +LV M Y L+YK K
Sbjct: 724 VQLYSQTEKTNLNRLVEIMKFYRLSYKLEK 753
Score = 88 (36.0 bits), Expect = 1.4e-71, Sum P(4) = 1.4e-71
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 902 GKVSQDNDNAVQKATVERDSLP-LLFKFNEGFTNAVKRPVRMRDFL 946
G+V Q + +K T+E + P + ++F EGFTNAVK+ V ++DFL
Sbjct: 893 GRVIQTSPET-KKKTMEATAGPNIKYRFQEGFTNAVKKTVYVKDFL 937
Score = 41 (19.5 bits), Expect = 1.4e-71, Sum P(4) = 1.4e-71
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 809 LADGYKENMDLAGEEDSKTESAKTNNAAVSAKLIEKSKSLPYSRQCNP 856
L D E D + + K ++ +T + + KL +L Y + NP
Sbjct: 768 LVDSLDEKDDEELQRNKKQQNQQTQDITMQYKLEPPIDTLLYFQNQNP 815
>UNIPROTKB|I3LC39 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:FP016225
Ensembl:ENSSSCT00000031631 Uniprot:I3LC39
Length = 1007
Score = 453 (164.5 bits), Expect = 4.4e-71, Sum P(4) = 4.4e-71
Identities = 106/248 (42%), Positives = 140/248 (56%)
Query: 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNS 365
+G P QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM S
Sbjct: 395 SGRPRQKVALLCGPPGLGKTTLAHVIARHAGYCVVEMNASDDRSPEAFRTRIEAATQMES 454
Query: 366 VMADS-RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXX 424
V+ RP CLVIDEIDGA A+ V+L ++ +RK E A
Sbjct: 455 VLGSGGRPNCLVIDEIDGA---PTAAINVLLSVL--DRKGPQEAEPGAPA-MAAGGGRRR 508
Query: 425 XXXXASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSS 484
L+RP+ICICND +AP+LR L+ A + F SR+ RL+ M+
Sbjct: 509 RAEGGLLMRPIICICNDQFAPSLRQLKPQALLLHFPPTLPSRLTQRLQE---QRGMQADP 565
Query: 485 IALTTLAEYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543
AL L E T+ DIR+C+N LQFL + + L++ + + VG KD + F +W+E+FQ
Sbjct: 566 GALAALCEKTDNDIRACINALQFLHGRGRRKLSIQVVQTTRVGLKDQRKGLFSVWQEVFQ 625
Query: 544 KRKTKRLR 551
+ +R R
Sbjct: 626 LPRAQRRR 633
Score = 227 (85.0 bits), Expect = 4.4e-71, Sum P(4) = 4.4e-71
Identities = 67/238 (28%), Positives = 110/238 (46%)
Query: 564 FDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQ 623
+ LH+ S G+++ + G+ +N L+L+ D + LD L DL+ + Q
Sbjct: 671 YHILHAAAS-AGEHEKVVQGLFDNFLRLRLRDSSLGTVCVALDWLAFDDLLGRAAHHGQN 729
Query: 624 MPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRH 683
L Y P L H L + P + +P S Q +N ++ K+ S I P
Sbjct: 730 FQLLRYLPFLPPAFHLLFATSHVPRIAFPSSQQEAQNRMNRTQNLIKTLVSGITPATRSR 789
Query: 684 LSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDP 743
+ ++LV D++ LL IL+P LRPV+ L S +EK LA LV M++YSLTY+ ++
Sbjct: 790 AAPQALVLDTLCLLLDILAPK-LRPVSTQLYSTREKQQLASLVGTMLAYSLTYRQERTPD 848
Query: 744 LLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRIMQV 801
G V +P + E F + L KQ++ E+E +++ +V
Sbjct: 849 -----GQYVYR------LEPNVEEVCRFPELPARK-PLTYQAKQLIAREIEVEKMRRV 894
Score = 146 (56.5 bits), Expect = 4.4e-71, Sum P(4) = 4.4e-71
Identities = 34/106 (32%), Positives = 57/106 (53%)
Query: 134 ISSSGVEERV---KKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSSEGQSDRSLPE 190
+S + ++E+V ++ + + L+ + +KVE+EA + ++ P
Sbjct: 253 VSFTSLKEKVDSERRQRLLKEAQQLSDTLCSLRAEKVEEEA------QPTGAPAEEPAPH 306
Query: 191 KPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSE 236
+ LWVD++AP +TELLSD+ TNR +L WLK WD VFG +
Sbjct: 307 QDASEHCLWVDEFAPQRYTELLSDDFTNRCLLKWLKLWDPVVFGQD 352
Score = 62 (26.9 bits), Expect = 4.4e-71, Sum P(4) = 4.4e-71
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 926 FKFNEGFTNAVKRPVRMRDFL 946
F+F EG +NAV+R V +RD L
Sbjct: 987 FRFKEGVSNAVRRGVYIRDLL 1007
Score = 38 (18.4 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 430 SLLRPVICICNDLYAPALR 448
+L+ +C+ D+ AP LR
Sbjct: 794 ALVLDTLCLLLDILAPKLR 812
>UNIPROTKB|E1B8Q4 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111 CTD:63922
KO:K11269 GeneTree:ENSGT00550000075029 OMA:TMLAYNL
EMBL:DAAA02057284 IPI:IPI00717859 RefSeq:NP_001179389.1
UniGene:Bt.60318 Ensembl:ENSBTAT00000026311 GeneID:517007
KEGG:bta:517007 NextBio:20872353 Uniprot:E1B8Q4
Length = 978
Score = 492 (178.3 bits), Expect = 9.9e-66, Sum P(3) = 9.9e-66
Identities = 146/447 (32%), Positives = 219/447 (48%)
Query: 117 DCLPVTAPSGGDRVYVKISS----SGVEERVKKLDVRAHSN-SLTSEPIDVLLQKVEQEA 171
D + VT+ +GGDR ++ + + +GV+ R L P L +KV+ E
Sbjct: 176 DYVNVTS-TGGDRAFLVLRADPVGTGVQSPFHDTGWRGRGQLDLLGMPFTSLKEKVDSER 234
Query: 172 FNKALNSSSEGQSDR--SLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWD 229
+ L + SD SL + V E AP E +D Q + LW+ ++
Sbjct: 235 RRRLLEEAQR-LSDMLCSLRSQEVEEETQ--PSGAPE---EEPADSQDASQHCLWVDEFA 288
Query: 230 SCVFGSEIRS---TSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGNFRXXXXXX 286
+ +E+ S T+ +L L+ + +++ +K R + +
Sbjct: 289 PQRY-TELLSDDFTNRCLLKWLKLWDLVVFGREKP----VQKPRPSAEPARGGKEATASS 343
Query: 287 XXXXXXKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASD 346
+ +++ + +G P QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASD
Sbjct: 344 KWKSHEQVLEEMLEAELDPSGRPRQKVALLCGPPGLGKTTLAHVIARHAGYCVVEMNASD 403
Query: 347 DRSSSTIENKILDVVQMNSVM-ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSN 405
DRS +I QM SV+ A RP CLVIDEIDGA A+ V+L ++ +RK
Sbjct: 404 DRSPEAFRTRIEAATQMESVLGAGGRPNCLVIDEIDGA---PTAAINVLLSVL--DRKG- 457
Query: 406 TAKENVAKEDQPEXXXXXXXXXXASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVS 465
+ P L+RP+ICICND +AP+LR L+Q A + F S
Sbjct: 458 PQQAGPGGPSVPTGGGRRRRAEAGLLMRPIICICNDPFAPSLRQLKQQALLLHFPPTLPS 517
Query: 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQV 524
R++ RL+ I M+ AL L E T+ DIR+C+N LQFL ++ + L+V + S
Sbjct: 518 RLMQRLQEISLRRGMRADPGALAALCEKTDNDIRACINALQFLHRRGQRELSVQAVQSTR 577
Query: 525 VGRKDMSRSAFDIWKEIFQKRKTKRLR 551
+G KD + F +W+E+FQ + +R R
Sbjct: 578 IGLKDQRKGLFSVWQEVFQLPRAQRRR 604
Score = 234 (87.4 bits), Expect = 9.9e-66, Sum P(3) = 9.9e-66
Identities = 65/238 (27%), Positives = 114/238 (47%)
Query: 564 FDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQ 623
+ LH +S G+++ + G+ +N L+++ D + LD L DL+ + + +Q
Sbjct: 642 YHILHVAMS-AGEHEKVVQGLFDNFLRMRLRDSSLGAVCTALDWLAFDDLLGRAALHSQS 700
Query: 624 MPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRH 683
L Y P L H L + P + +P S Q +N + ++ ++ S I P
Sbjct: 701 FQLMCYLPFLLPAFHLLFASSHVPRITFPSSQQEAQNRMNQTQNLIQTLVSGITPATRSW 760
Query: 684 LSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDP 743
+ ++L+ D++ LL IL+P LRPV+ L SA+EK LA LV M++YSLTY+ ++
Sbjct: 761 AAPQALILDTLCLLLDILTPK-LRPVSTQLYSAREKQQLASLVGTMLAYSLTYRQDRTPD 819
Query: 744 LLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRIMQV 801
G + +P + E F + L KQ++ EVE +++ +V
Sbjct: 820 -----GQYIYR------LEPNVEEVCRFPELPARK-PLTYQAKQLIAREVEVEKMRRV 865
Score = 64 (27.6 bits), Expect = 9.9e-66, Sum P(3) = 9.9e-66
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 902 GKVSQDNDNAVQKATVERDSLPLLFKFNEGFTNAVKRPVRMRDFL 946
G + + D A ++ + F+F EG +NAV+R + +RD L
Sbjct: 934 GHEAPETDTAERRVGTAVGRSDVWFRFKEGVSNAVRRSLYIRDLL 978
>UNIPROTKB|F1P1U8 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0017111
GeneTree:ENSGT00550000075029 OMA:TMLAYNL EMBL:AADN02023682
EMBL:AADN02023683 IPI:IPI01017334 Ensembl:ENSGALT00000008510
ArrayExpress:F1P1U8 Uniprot:F1P1U8
Length = 967
Score = 353 (129.3 bits), Expect = 1.6e-60, Sum P(4) = 1.6e-60
Identities = 79/167 (47%), Positives = 103/167 (61%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM- 367
P+ KV LLCGPPGLGKTTLAHV A+H GY+VVE+NASDDRS T +I QM SV+
Sbjct: 358 PKYKVALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPETFRIRIEAATQMKSVLG 417
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXX 427
A+ +P CL+IDEIDGA ++ V+L +++++ + + + E
Sbjct: 418 AEEKPNCLIIDEIDGA---PTASITVLLNIINSKEPEGEVAASGGRRRRREGSL------ 468
Query: 428 XASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHI 474
LLRPVICICND Y PALR LRQ A + F Q + SR+ RL +
Sbjct: 469 ---LLRPVICICNDQYVPALRPLRQQAFLLSFPQTAPSRLAQRLGEV 512
Score = 221 (82.9 bits), Expect = 1.6e-60, Sum P(4) = 1.6e-60
Identities = 65/232 (28%), Positives = 104/232 (44%)
Query: 567 LHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPL 626
LH L S+ G+ + + G++EN L ++ D L+ L SD++ + ++ Q L
Sbjct: 620 LH-LASSSGEQEKLAQGLYENFLNMKLRDSSFSSVCLALEWLCFSDMLGRAVLHGQSFQL 678
Query: 627 YVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLST 686
Y P L + H L + P L +P S+ ++ S S I P
Sbjct: 679 MRYLPFLPVAFHMLFAATSIPRLSYPSSHHEALAKLNHMQNLMVSMVSGITPSARSRAGQ 738
Query: 687 ESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDPLLN 746
+SLV + + LL I++P LRPV L S KEK LA L+S M++Y+LTY +
Sbjct: 739 QSLVLEVLCLLLDIIAPK-LRPVNTQLYSLKEKQQLAALISTMLAYNLTYHQERLPE--- 794
Query: 747 NLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRI 798
G V DP + + F + L KQ++ HE+E +++
Sbjct: 795 --GQYV------YKLDPNVEDVCRFPDLPARKQ-LTYQAKQLIAHEIEMEKM 837
Score = 221 (82.9 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 74/206 (35%), Positives = 106/206 (51%)
Query: 359 DVVQMNSVMADSR-PKCLVI-----DEIDGALG-DGKGAVEVILKMVSAERKSNTAKENV 411
+VV+MN+ +D R P+ I ++ LG + K +I ++ A S T N+
Sbjct: 387 NVVEMNA--SDDRSPETFRIRIEAATQMKSVLGAEEKPNCLIIDEIDGAPTASITVLLNI 444
Query: 412 AKEDQPEXXXXXXXXXX-----ASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSR 466
+PE + LLRPVICICND Y PALR LRQ A + F Q + SR
Sbjct: 445 INSKEPEGEVAASGGRRRRREGSLLLRPVICICNDQYVPALRPLRQQAFLLSFPQTAPSR 504
Query: 467 VVSRLKHI-CNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK--KEILNVMDIGSQ 523
+ RL + C K S+ +A + DIRSC+NTLQFL + KE L+V + +
Sbjct: 505 LAQRLGEVWC-----KPSTTPC--MAAWN--DIRSCINTLQFLHSRGQKE-LDVRVVQTM 554
Query: 524 VVGRKDMSRSAFDIWKEIFQKRKTKR 549
+G KD ++ F IW+EIFQ + +R
Sbjct: 555 KIGLKDQNKGLFSIWQEIFQLPRVQR 580
Score = 159 (61.0 bits), Expect = 1.6e-60, Sum P(4) = 1.6e-60
Identities = 38/100 (38%), Positives = 52/100 (52%)
Query: 170 EAFNKALNSSSEG--QSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQ 227
E N +S E Q + E+P H LWVDK+AP + ELLSD+ TNR +L WLK
Sbjct: 244 ETINSCSETSDEATEQPGDTGEEEPTPH-CLWVDKFAPRRYIELLSDDYTNRCLLKWLKL 302
Query: 228 WDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTR 267
WD+ VFG E ++ H Q+K+Q + T+
Sbjct: 303 WDTVVFGKE--KPVKKAKPGAEAHPPFRQHKEQQNKWKTK 340
Score = 65 (27.9 bits), Expect = 1.6e-60, Sum P(4) = 1.6e-60
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 926 FKFNEGFTNAVKRPVRMRDFL 946
F+FNEG +NAV+R + +RD L
Sbjct: 947 FRFNEGVSNAVRRNLYIRDLL 967
Score = 45 (20.9 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 430 SLLRPVICICNDLYAPALR 448
SL+ V+C+ D+ AP LR
Sbjct: 740 SLVLEVLCLLLDIIAPKLR 758
Score = 41 (19.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 923 PLLFKFNEGFTNAVKRPVRMRDFLLS 948
P++ N+ + A+ RP+R + FLLS
Sbjct: 472 PVICICNDQYVPAL-RPLRQQAFLLS 496
>FB|FBgn0015376 [details] [associations]
symbol:cutlet "cutlet" species:7227 "Drosophila melanogaster"
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=ISS;NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0008283
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
RefSeq:NP_787969.1 ProteinModelPortal:Q8IQ05 SMR:Q8IQ05
STRING:Q8IQ05 PaxDb:Q8IQ05 EnsemblMetazoa:FBtr0077541 GeneID:44637
KEGG:dme:Dmel_CG33122 UCSC:CG33122-RA CTD:44637 FlyBase:FBgn0015376
InParanoid:Q8IQ05 OMA:KRPNCIV OrthoDB:EOG44F4RB PhylomeDB:Q8IQ05
GenomeRNAi:44637 NextBio:837492 ArrayExpress:Q8IQ05 Bgee:Q8IQ05
Uniprot:Q8IQ05
Length = 993
Score = 593 (213.8 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 160/504 (31%), Positives = 249/504 (49%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G P QKV LLCGPPGLGKTTLAH A+H GY+V E+NASDDRS + + + QM+SV
Sbjct: 416 GRPMQKVALLCGPPGLGKTTLAHTIARHAGYNVREINASDDRSPEAFKLALENGTQMSSV 475
Query: 367 M-ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXX 425
+ D RP C+V+DEIDGA + +++ ++K +S + K AK +
Sbjct: 476 LNEDKRPNCIVLDEIDGA---PRQSIDYLVKFIS-DAVYTKVKAKGAKAEHNV------- 524
Query: 426 XXXASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
L RP+ICICND+Y PALR LRQ+A V F +R+ RL I E +KT
Sbjct: 525 -----LKRPIICICNDVYDPALRPLRQVAFVVTFPPIDAARLAERLVKIAFKEQLKTDFG 579
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
+L LAE + D+RSC++++QF + +K L + D+ + +G+KD + F +W IF+ +
Sbjct: 580 SLIALAEKSGNDVRSCISSMQFFNAQKHSLTLQDVLNNNLGQKDRHQGLFAVWDAIFRIQ 639
Query: 546 KTKRLRXXXXXXXXXXXEFDFLHSLISNR-----------GDYDVIFDGIHENILQLQYH 594
+ ++ + ++ ++ R GDY+ + G++EN LQ +
Sbjct: 640 RPRKTLHTDANKVDEPAQVTMTNTSVTTRVRNVLEVVHSSGDYERLTQGVYENYLQQKMP 699
Query: 595 DPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKS 654
DP + L +D + I R Q +Y Y + H L + + P + +P
Sbjct: 700 DPNFTGVCEALKWFCFTDTVQHQISRQQNYSVYPYLQYGFVAWHLLFATLAWPKIAFPTR 759
Query: 655 YQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLL 714
++ + +IF++ + +L+ D++ L ILSP LR VA+ LL
Sbjct: 760 GFEFQQKSTNQRNIFQALCKGVTTSALGVGQGGTLLLDTVPLLKRILSPQ-LRSVAVQLL 818
Query: 715 SAKEKNDLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLSFDPPINEFITFKGY 774
S KE+ DL + MV LT+ KS + H V +P ++ F GY
Sbjct: 819 SPKEQQDLRHTIEVMVDLGLTFVQVKS---------QEGHYV--FQTEPDLDALSAFPGY 867
Query: 775 RSNHYVLALAVKQVLVHEVEKQRI 798
L +Q++ EV+ +RI
Sbjct: 868 TG--LSLPYFSRQLIAREVDLERI 889
Score = 414 (150.8 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 114/331 (34%), Positives = 168/331 (50%)
Query: 95 RDD-ARVEVEEKFVSRYAS-EIDGDCLPVTAPSGGDRVYVKISSSGVEERVKKLDVRAHS 152
+DD +R++ F R S EI S +R+YV+ S E+R +LD+ +
Sbjct: 215 KDDVSRLKALHDFKMRNLSYEIPNWPFLAIQRSDLERIYVRFHSEDYEQR--QLDLISAR 272
Query: 153 NSLTSEPIDVLLQKVEQEAFNKALNSSSEGQ-SDRSLPEKPVVHE--QLWVDKYAPNSFT 209
+ + K+ QEA L+ ++ + +D +L E +LWVDKY P +
Sbjct: 273 GEVVGSLLGEAKDKIWQEAGEIVLSRATAAEDADVTLVNSNANSEPGRLWVDKYKPRKYI 332
Query: 210 ELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKN 269
+LLSDE TNR +L WLK WD VFG S E+ A+ + +SF ++
Sbjct: 333 DLLSDEMTNRSLLYWLKMWDKVVFGKAFHSKREQ--EAVTGEGGTAGGAANQLNSFNKRT 390
Query: 270 RGNRWSNGNFRXXXXXXXXXXXXKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAH 329
G SNG +R + + + + G P QKV LLCGPPGLGKTTLAH
Sbjct: 391 -GKFESNGGWRQRKS-----------RQALNTNVDALGRPMQKVALLCGPPGLGKTTLAH 438
Query: 330 VAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM-ADSRPKCLVIDEIDGALGDGK 388
A+H GY+V E+NASDDRS + + + QM+SV+ D RP C+V+DEIDGA +
Sbjct: 439 TIARHAGYNVREINASDDRSPEAFKLALENGTQMSSVLNEDKRPNCIVLDEIDGA---PR 495
Query: 389 GAVEVILKMVS------AERKSNTAKENVAK 413
+++ ++K +S + K A+ NV K
Sbjct: 496 QSIDYLVKFISDAVYTKVKAKGAKAEHNVLK 526
Score = 61 (26.5 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 905 SQDNDNAVQKATVERDSLPLLFKFNEGFTNAVKRPVRMRDFL 946
S ++A + T P+ +++ EGF NAV++ V + + L
Sbjct: 952 STSTNSAEESKTDAIVKSPIWYRYKEGFNNAVRKDVHIHELL 993
>POMBASE|SPBC902.02c [details] [associations]
symbol:ctf18 "RFC-like complex subunit Ctf18"
species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005657
"replication fork" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=IC] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0051455 "attachment of
spindle microtubules to kinetochore involved in homologous
chromosome segregation" evidence=IMP] [GO:0003689 "DNA clamp loader
activity" evidence=TAS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 PomBase:SPBC902.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0017111
eggNOG:COG0470 GO:GO:0005657 GO:GO:0051455 KO:K11269 EMBL:AB027926
PIR:T50383 RefSeq:NP_595200.1 ProteinModelPortal:Q9USQ1
STRING:Q9USQ1 EnsemblFungi:SPBC902.02c.1 GeneID:2541270
KEGG:spo:SPBC902.02c OrthoDB:EOG4HDX3F NextBio:20802382
GO:GO:0031390 GO:GO:0007062 Uniprot:Q9USQ1
Length = 960
Score = 455 (165.2 bits), Expect = 5.2e-50, Sum P(3) = 5.2e-50
Identities = 143/547 (26%), Positives = 258/547 (47%)
Query: 303 TRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQ 362
T + P++++++L G G GKTTLAHV A GY V+E+NASDDR++ T+ K+ +
Sbjct: 408 TSDSDRPDKRIMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASDDRTAHTVHEKVSSAIS 467
Query: 363 MNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXX 422
+S ++ S+P C+++DEIDG GD V +L ++ ++ K+ + +
Sbjct: 468 NHSALS-SQPTCVIVDEIDG--GD-PAFVRALLSLLESDEKAT---------EYSQAGNS 514
Query: 423 XXXXXXASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKT 482
L RP+ICICNDLY PALR LR A++ F P + +V RL+ IC NE++
Sbjct: 515 KKKKKFKKLCRPIICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAV 574
Query: 483 SSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIF 542
S +LT L + DIRSC+N+LQ L + ++ I +++ K S S + + +F
Sbjct: 575 DSRSLTLLTDIYNSDIRSCINSLQLLSLNNKRIDSETI--KLLQPKSNSFSTSSLIQSLF 632
Query: 543 QKRKTKRLRXXXXXXXXXXXEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTV 602
+ K++R D L + I D + + L L + D ++ K
Sbjct: 633 LQLDNKQIRAIEASQPTYS-HLDALLARIDGANDSESVLMNCFHTYLDLPFTDSLLSKPA 691
Query: 603 KCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWP-KSYQRYRNA 661
+ L D +H + L+ Y P I H L + +K L P +S
Sbjct: 692 LTSEWLYFFDQLHSQCYKGNY-ELWRYIPYSIIHFHYLYATPEKCRLPHPPRSDLEALKL 750
Query: 662 FMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKND 721
+ + +I S+ S + Y ++ S++ + I +L ++P TL+ + + +
Sbjct: 751 YRTRKEILDSFISTLNAYENQMHGERSILLELIRTILITINP-TLKQKEDSMPRSALPSK 809
Query: 722 LAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYVL 781
+ ++ + Y+L ++ P+ + GN V +PP++E + + S++ V
Sbjct: 810 IEHAINILNHYNLRFQQL---PVGD--GNYVYR------LEPPLDELV-WDAPTSSYSVR 857
Query: 782 ALAVKQVL---VHEVEKQRIMQ--VTIGKSEHLAD---GYKENMDLAGE--EDSKTESAK 831
+ +++L + +++KQ + + S D G D G + K+E+
Sbjct: 858 QMLSQELLKKRLADIKKQTLTDNPTSSNSSRKRKDFNSGKAIKRDFFGRIISEPKSEAVT 917
Query: 832 TNNAAVS 838
+NNAA++
Sbjct: 918 SNNAALN 924
Score = 127 (49.8 bits), Expect = 5.2e-50, Sum P(3) = 5.2e-50
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFG 234
++LWVD Y P F +LL DE+ +R + W+K WD CVFG
Sbjct: 350 QKLWVDTYRPQLFRDLLGDERVHRAAMHWIKAWDPCVFG 388
Score = 62 (26.9 bits), Expect = 5.2e-50, Sum P(3) = 5.2e-50
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 927 KFNEGFTNAVKRPVRMRDFL 946
KF++GF+NAV++P+ + + L
Sbjct: 939 KFHDGFSNAVRKPISLNEIL 958
>UNIPROTKB|F1NVV6 [details] [associations]
symbol:CHTF18 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00550000075029
EMBL:AADN02023682 EMBL:AADN02023683 IPI:IPI00595250
Ensembl:ENSGALT00000040599 ArrayExpress:F1NVV6 Uniprot:F1NVV6
Length = 582
Score = 415 (151.1 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 100/244 (40%), Positives = 138/244 (56%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM- 367
P+ KV LLCGPPGLGKTTLAHV A+H GY+VVE+NASDDRS T +I QM SV+
Sbjct: 349 PKYKVALLCGPPGLGKTTLAHVIARHAGYNVVEMNASDDRSPETFRIRIEAATQMKSVLG 408
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXX 427
A+ +P CL+IDEIDGA ++ V+L +++++ + + + E
Sbjct: 409 AEEKPNCLIIDEIDGA---PTASITVLLNIINSKEPEGEVAASGGRRRRREGSL------ 459
Query: 428 XASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIAL 487
LLRPVICICND Y PALR LRQ A + F Q + SR+ RL + N + + +
Sbjct: 460 ---LLRPVICICNDQYVPALRPLRQQAFLLSFPQTAPSRLAQRLGEVWNWDGSEAQGDVM 516
Query: 488 TTLAEYTECDIRSCLNTLQFLDKK--KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
L R+ N FL + KE L+V + + +G KD ++ F IW+EIFQ
Sbjct: 517 A-LCNTPRRSNRTRGNGFHFLHSRGQKE-LDVRVVQTMKIGLKDQNKGLFSIWQEIFQLP 574
Query: 546 KTKR 549
+ +R
Sbjct: 575 RVQR 578
Score = 159 (61.0 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 38/100 (38%), Positives = 52/100 (52%)
Query: 170 EAFNKALNSSSEG--QSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQ 227
E N +S E Q + E+P H LWVDK+AP + ELLSD+ TNR +L WLK
Sbjct: 235 ETINSCSETSDEATEQPGDTGEEEPTPH-CLWVDKFAPRRYIELLSDDYTNRCLLKWLKL 293
Query: 228 WDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTR 267
WD+ VFG E ++ H Q+K+Q + T+
Sbjct: 294 WDTVVFGKE--KPVKKAKPGAEAHPPFRQHKEQQNKWKTK 331
Score = 41 (19.5 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 923 PLLFKFNEGFTNAVKRPVRMRDFLLS 948
P++ N+ + A+ RP+R + FLLS
Sbjct: 463 PVICICNDQYVPAL-RPLRQQAFLLS 487
>SGD|S000004683 [details] [associations]
symbol:CTF18 "Subunit of a Ctf18 RFC-like complex"
species:4932 "Saccharomyces cerevisiae" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IGI;IMP] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0043596 "nuclear replication
fork" evidence=IDA] [GO:0035753 "maintenance of DNA trinucleotide
repeats" evidence=IMP] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
SGD:S000004683 GO:GO:0005739 GO:GO:0005524 GO:GO:0003677
EMBL:BK006946 GO:GO:0006270 GO:GO:0043596 GO:GO:0000724 EMBL:Z49259
GO:GO:0017111 eggNOG:COG0470 GO:GO:0007064 OMA:YNEGFSN KO:K11269
GeneTree:ENSGT00550000075029 OrthoDB:EOG4HDX3F GO:GO:0031390
EMBL:L24514 PIR:S50340 RefSeq:NP_013795.1 ProteinModelPortal:P49956
SMR:P49956 DIP:DIP-5868N IntAct:P49956 MINT:MINT-626774
STRING:P49956 PaxDb:P49956 EnsemblFungi:YMR078C GeneID:855102
KEGG:sce:YMR078C CYGD:YMR078c HOGENOM:HOG000066044 NextBio:978425
Genevestigator:P49956 GermOnline:YMR078C GO:GO:0035753
Uniprot:P49956
Length = 741
Score = 399 (145.5 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
Identities = 140/510 (27%), Positives = 235/510 (46%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA 368
P +K+LLL GPPG+GKT++AHV AK G+ V E+NASD+R+ ++ KI +++ N
Sbjct: 174 PPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDERAGPMVKEKIYNLL-FNHTF- 231
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXXX 428
D+ P CLV DEIDG++ G + +++ ++ ++ K+ N QP+
Sbjct: 232 DTNPVCLVADEIDGSIESG--FIRILVDIMQSDIKAT----NKLLYGQPDKKDKKRKKKR 285
Query: 429 ASLL-RPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIAL 487
+ LL RP+ICICN+LYAP+L L+ ++ +PS + ++ RL IC+ E+M A+
Sbjct: 286 SKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAI 345
Query: 488 TTLAEYTECDIRSCLNTLQFL-------DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKE 540
L + + D+R+C+N LQFL D + KD S F I +
Sbjct: 346 NDLIDLAQGDVRNCINNLQFLASNVDSRDSSASDKPACAKNTWASSNKDSPISWFKIVNQ 405
Query: 541 IFQKRKTKRLRXXXXXXXXXXXEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLK 600
+F+K + ++ ++ L+ + N G+ D I G ++Y D + K
Sbjct: 406 LFRKDPHRDIKEQF---------YELLNQVELN-GNSDRILQGCFNIFPYVKYSDNGIRK 455
Query: 601 TVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRN 660
D L DLM+Q M L Y + + + I K R +N
Sbjct: 456 PANISDWLFFHDLMYQS-MYAHNGELLRYSALVPLVFFQTFGDIAN------KDDIRMKN 508
Query: 661 AFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKN 720
+ E+ ++ K +S I I RH+S +S + S + ++ + P ++S+ + N
Sbjct: 509 SEYEQREL-KRANSDIVSLIMRHISVQSPLMASFTDRKSLIFE--ILPYLDSMISS-DFN 564
Query: 721 DLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVS-HDV-STLSFDPPINEFITFKGYRSNH 778
+ L + KS L N + N DV L+ DPPI+E + N
Sbjct: 565 KIRNLKLKQAIMEELVQLLKSFQL-NLIQNRSEGFDVRGGLTIDPPIDEVVLLNPKHINE 623
Query: 779 YV------LALAVKQVLVHEVEKQRIMQVT 802
L+ + ++ + +K+ I QVT
Sbjct: 624 VQHKRANNLSSLLAKIEENRAKKRHIDQVT 653
Score = 129 (50.5 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
Identities = 38/127 (29%), Positives = 65/127 (51%)
Query: 130 VYVKISSSGVEERVKKLDVR-AHSN-SLTSEPIDVLLQKVEQEAFN--KALNSSSEGQSD 185
++ +SS+G ++KK + A N SL + P D + + + N L+ D
Sbjct: 38 IHAFVSSTGETVQLKKKPAKLATGNISLYTNP-DTVWRSDDTYGININYLLDKIEASGDD 96
Query: 186 RSLPEK--PVV----HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRS 239
R+ +K P+ + LWV+K+ P F +L+ +E+TNR +L WL+QW VF ++
Sbjct: 97 RTNAQKTSPITGKIGSDTLWVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPK 156
Query: 240 --TSEEV 244
T +EV
Sbjct: 157 LPTEKEV 163
Score = 52 (23.4 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 927 KFNEGFTNAVKRPV 940
K+NEGF+NAV++ V
Sbjct: 721 KYNEGFSNAVRKNV 734
>WB|WBGene00010676 [details] [associations]
symbol:K08F4.1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006974
GO:GO:0017111 eggNOG:COG0470 KO:K11269 GeneTree:ENSGT00550000075029
EMBL:Z68879 PIR:T23478 RefSeq:NP_501841.1 ProteinModelPortal:Q21350
SMR:Q21350 PaxDb:Q21350 EnsemblMetazoa:K08F4.1.1
EnsemblMetazoa:K08F4.1.2 EnsemblMetazoa:K08F4.1.3 GeneID:177879
KEGG:cel:CELE_K08F4.1 UCSC:K08F4.1.2 CTD:177879 WormBase:K08F4.1
HOGENOM:HOG000017144 InParanoid:Q21350 OMA:LRCDLST NextBio:898772
Uniprot:Q21350
Length = 850
Score = 197 (74.4 bits), Expect = 9.3e-37, Sum P(4) = 9.3e-37
Identities = 80/345 (23%), Positives = 142/345 (41%)
Query: 430 SLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTT 489
++ RP+I ICN+LY PALR LR +A + + RL+ IC+ E ++ L
Sbjct: 422 AIRRPIIGICNNLYTPALRDLRGVAWCVQLVATKQDVLAKRLEEICDRERLRCDLSTLRK 481
Query: 490 LAEYTECDIRSCLNTLQFLD----KKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
L E D+R +NTLQ++ K + + I + K S S F+ W I +
Sbjct: 482 LCELCANDMRHSINTLQWVAVAARKSNRAIGMKLIHEVIEKEKGGSASIFEHWSSILELS 541
Query: 546 KTKRLRXXXXXXXXXXXEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCL 605
K + FD + + ++ G + G+H N L P+ +
Sbjct: 542 KHTDAKGGIKSVRERI--FD-IERISADHGGEERFVSGLHANYLVTL---PIGVIRKAST 595
Query: 606 DCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRNAFMEK 665
L D+ + + Q + Y +++H ++ + + +P+ Q E
Sbjct: 596 WFLFYDDIQ-KIVHSLQNWSVLKYVFSFFVSLHLNIATHARVPIAYPQLEQNIFQKTKES 654
Query: 666 MDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQL 725
+ + S +R + L+ D + +++I+ PP ++P+ L + +E Q
Sbjct: 655 EETISAVRSC--GQSTRGAPKKELLLDILPFIVNIVQPP-IKPMNESLYNQRELATFNQT 711
Query: 726 VSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTL-SFDPPINEFI 769
VS M Y LTY T +N L S D+ T+ D P ++
Sbjct: 712 VSIMCDYGLTYTATMVKDQVNWLFTP-SIDILTMFPLDGPKRPYL 755
Score = 190 (71.9 bits), Expect = 9.3e-37, Sum P(4) = 9.3e-37
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILD--VVQMNSV 366
P K+LLL GP GLGK+TLA + A+ GY ++VNASD R+ + + NK+L+ V ++
Sbjct: 328 PSSKMLLLSGPAGLGKSTLARIVARQAGYSTIDVNASDARTVADL-NKVLEGAVKTSRTL 386
Query: 367 MADSRPKCLVIDEIDG 382
AD RP CL++DEIDG
Sbjct: 387 DADQRPACLILDEIDG 402
Score = 154 (59.3 bits), Expect = 9.3e-37, Sum P(4) = 9.3e-37
Identities = 42/119 (35%), Positives = 66/119 (55%)
Query: 128 DRVYVKISSSGVEERVK-KLDVRA-HSNSLTSEPIDVLLQKV---EQEA-FNKALNSS-- 179
DR+ V + S ++ + ++ RA S SE + L ++ EQEA F++ L +
Sbjct: 190 DRLSVPLVESITQQATRSRVGFRAFQSICQESERLSKLKEESRVKEQEAEFSRMLKETET 249
Query: 180 -SEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEI 237
SE ++++S PE LWV+KY +F++LLSD NR +L WLK WD CVF ++
Sbjct: 250 PSEYENNKSHPES-----SLWVNKYEAKNFSDLLSDSTVNRNILTWLKMWDECVFHQKV 303
Score = 83 (34.3 bits), Expect = 5.2e-25, Sum P(4) = 5.2e-25
Identities = 39/162 (24%), Positives = 71/162 (43%)
Query: 681 SRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTK 740
+R + L+ D + +++I+ PP ++P+ L + +E Q VS M Y LTY T
Sbjct: 668 TRGAPKKELLLDILPFIVNIVQPP-IKPMNESLYNQRELATFNQTVSIMCDYGLTYTATM 726
Query: 741 SDPLLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRIMQ 800
V V+ L F P I+ F LA A +Q++ H++ +M+
Sbjct: 727 -----------VKDQVNWL-FTPSIDILTMFPLDGPKRPYLANATRQMIAHKIT---LMR 771
Query: 801 VTIGKSEHLADGYKENMD-LAGEEDSKTESAKTNNAAVSAKL 841
V + +S + N D + +S+++ K +A +L
Sbjct: 772 VRLTESTSNTERISTNADKIKAIVESESKKKKRLSAGAMKRL 813
Score = 41 (19.5 bits), Expect = 3.6e-25, Sum P(4) = 3.6e-25
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 157 SEPID--VLLQKVEQEAFNKALNSSSEGQSDRSLPEK----PVVHEQLWVDKYAPNSFTE 210
S P+D + ++ V E K+ ++ + ++ SL +K E+ + + N+F +
Sbjct: 74 SHPMDWHMRMETVSSEVLQKSQVNAVKRRALESLEQKINEAAAQAERKMNENHHSNAFDD 133
Query: 211 LLSDEQT 217
S EQT
Sbjct: 134 FQSGEQT 140
Score = 38 (18.4 bits), Expect = 9.3e-37, Sum P(4) = 9.3e-37
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 924 LLFKFNEGFTNAVKRPVRMR 943
++F +G ++AVK+ V M+
Sbjct: 821 IVFNHQDGDSSAVKKKVTMQ 840
>ASPGD|ASPL0000006457 [details] [associations]
symbol:AN6694 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0051455
"attachment of spindle microtubules to kinetochore involved in
homologous chromosome segregation" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0007049
EMBL:BN001301 GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000112
ProteinModelPortal:P0C1D3 EnsemblFungi:CADANIAT00007479
HOGENOM:HOG000180892 OMA:YNEGFSN OrthoDB:EOG4S1XG8 Uniprot:P0C1D3
Length = 993
Score = 295 (108.9 bits), Expect = 1.1e-33, Sum P(5) = 1.1e-33
Identities = 78/203 (38%), Positives = 111/203 (54%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILD------VVQ 362
P +KVLLLCGPPGLGKTTLAHV A+ GY V+E+NASD+RS ++ +I D V
Sbjct: 312 PHRKVLLLCGPPGLGKTTLAHVCARQAGYEVLEINASDERSRDVVKGRIRDALGTENVKG 371
Query: 363 MNSVMADS------RPKCLVIDEIDGAL----GDGKGAVEVILKMVSAERKSNTAKENVA 412
MN + + RP C+V+DE+DG + G G+G L + + N+A+ +
Sbjct: 372 MNVELGEQKVRKVGRPVCVVVDEVDGVVSGSGGSGEGGFMKALTDLVLLDQRNSARTSER 431
Query: 413 KEDQPEXXXXXXXXXXASLLRPVICICNDLYAPALRSLRQ--IAKV-HVFIQPSVSRVVS 469
D + LRP+I +CND+Y +LR LRQ +A++ HV P + VVS
Sbjct: 432 ASDGRKRKGDNFR-----FLRPLILVCNDVYHASLRPLRQSSVAEIIHVRQAP-LENVVS 485
Query: 470 RLKHICNNESMKTSSIALTTLAE 492
R+K I E + + S + L E
Sbjct: 486 RMKSIFTLEGIPSDSDGVRRLCE 508
Score = 118 (46.6 bits), Expect = 1.1e-33, Sum P(5) = 1.1e-33
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRS 239
+W +KY +TEL+ DE+TNR +L WL+ WD V+ S R+
Sbjct: 257 MWTEKYRARKYTELIGDERTNRSILRWLRGWDPIVYPSLARA 298
Score = 79 (32.9 bits), Expect = 1.1e-33, Sum P(5) = 1.1e-33
Identities = 45/195 (23%), Positives = 90/195 (46%)
Query: 661 AFMEKMDIFKSWHSKIP-PYISRHLSTESLVEDSISPLLHILSPPTLRPVALH------L 713
A + I ++ S P + S+ ++ + I ++ +LSP ++PV + +
Sbjct: 743 ATKQNQAILSTFQSSFSAPLLRLFRSSNNVATELIPNVIRMLSPD-IKPVVVRGSEQKSV 801
Query: 714 LSAKEKNDLAQLVSA---MVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLSFDPPINEFIT 770
S +++++ A + SA M +T++ + + N G H +PP++ ++
Sbjct: 802 ASVRKESERALVQSAVRVMTGLGVTFEKVR----IENEGG--GHGGWAYRMEPPLDALVS 855
Query: 771 FK---GYRSNHYVLALAVKQVLVHEVEKQRIMQVTIGKSEHLAD-GYKENMDLAGEEDSK 826
F G+ S + AV+QVL E K+ I + SE+L+ G K++ + +D +
Sbjct: 856 FSKVPGFSSATNPVRYAVRQVLDQEYRKESIRK----NSENLSSTGSKKSTTKS--DDIE 909
Query: 827 TESAKTNNAAVSAKL 841
T + N A +AKL
Sbjct: 910 TPA----NPAEAAKL 920
Score = 56 (24.8 bits), Expect = 1.1e-33, Sum P(5) = 1.1e-33
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 928 FNEGFTNAVKRPVRMRDFL 946
+++GF+NAV++P+ M + L
Sbjct: 972 YHDGFSNAVRKPISMAELL 990
Score = 37 (18.1 bits), Expect = 1.1e-33, Sum P(5) = 1.1e-33
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 66 EPQFDEKRSRIVDNDDED 83
EP+ + +DNDD+D
Sbjct: 85 EPKRPKIMGGFLDNDDDD 102
>GENEDB_PFALCIPARUM|PFA0545c [details] [associations]
symbol:PFA0545c "replication factor c protein,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006260
GO:GO:0017111 EMBL:AL844501 GO:GO:0005663 RefSeq:XP_001351041.1
ProteinModelPortal:Q8I233 EnsemblProtists:PFA0545c:mRNA
GeneID:813246 KEGG:pfa:PFA_0545c HOGENOM:HOG000283786
ProtClustDB:CLSZ2500531 Uniprot:Q8I233
Length = 1167
Score = 179 (68.1 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 41/95 (43%), Positives = 60/95 (63%)
Query: 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADS 370
++VLLL G G GKTTLA+V A H ++++E+N SDDR+ T+ I VV +NSV S
Sbjct: 385 ERVLLLGGSSGKGKTTLAYVIANHFKFNIIEINGSDDRNKETLIPFIESVVCINSVT--S 442
Query: 371 RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSN 405
+P +IDEIDG L ++ I+K ++ + K N
Sbjct: 443 KPNLCIIDEIDG-LSSTHQNIDSIMKFLNKKDKKN 476
Score = 168 (64.2 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 433 RPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492
RP+ICICND+Y +L+ LR+I+KV + ++ + R+ +IC+ E++K ++ A+ L +
Sbjct: 482 RPIICICNDIYHKSLKELRKISKVVIVENINIEMLKIRINYICDKENIKINNEAINKLID 541
Query: 493 YTECDIRSCLNTLQFL 508
+ DIRS LNT+ FL
Sbjct: 542 ICKSDIRSILNTIYFL 557
Score = 104 (41.7 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 28/99 (28%), Positives = 55/99 (55%)
Query: 140 EERVKKLDVRAH--SNSLTSE---PIDVLLQKVEQE---AFNKALNSSSEGQSDRSLPEK 191
E+R K+ + H +N++ E D++ K+++ +N ++ + G+ + +
Sbjct: 260 EKRKKQTNNYYHHNNNNINLEGKSKYDIIKNKLKESNPNMYNAFSSNMNRGKKNDHNDDN 319
Query: 192 PVVHEQL-WVDKYAPNSFTELLSDEQTNREVLLWLKQWD 229
++ + +V+KY F+ELL+DE N EVLLWLK+W+
Sbjct: 320 DDNNKNINFVEKYRAKYFSELLTDESINLEVLLWLKKWN 358
Score = 91 (37.1 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 45/189 (23%), Positives = 81/189 (42%)
Query: 509 DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRXXXXXXXXXXXEFDFLH 568
+KK I+N M++ + + KD + + ++ I+ K K K++ DF +
Sbjct: 617 NKKVVIIN-MELLNSYLFYKDANNNYIELLNMIYVKNKNKKITKKLLQDCH-----DFFY 670
Query: 569 SLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCL---GNSDLMHQYIMR-TQQM 624
++N +Y + I++N+L + ++D K CLD L N + + I+ + Q
Sbjct: 671 INLANEYNYAQSYYYIYDNLLSIPFNDFDFCKLSYCLDFLCFCDNMEYEQKNILNYSLQK 730
Query: 625 PLYVYQPPLAITVH-RLVSQIQKP--NLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPY-- 679
LY IT+H S IQ N +QR +N + D F + + Y
Sbjct: 731 TLYYVVYLFIITIHLNTNSHIQYILINNSHSNYFQRKKNQVQKIKDNFVNEQFGVITYKY 790
Query: 680 -ISRHLSTE 687
S+H +E
Sbjct: 791 IYSKHFFSE 799
Score = 48 (22.0 bits), Expect = 2.3e-26, Sum P(4) = 2.3e-26
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 249 RRHSTISQNKKQNDSSFTRKNRGNRWSNGNF 279
RR+ I N N S+ RGN +N NF
Sbjct: 50 RRNENIHNNNNYN-SNININKRGNYGNNENF 79
>UNIPROTKB|Q8I233 [details] [associations]
symbol:PFA_0545c "Replication factor c protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
Pfam:PF00004 SMART:SM00382 GO:GO:0005524 GO:GO:0006260
GO:GO:0017111 EMBL:AL844501 GO:GO:0005663 RefSeq:XP_001351041.1
ProteinModelPortal:Q8I233 EnsemblProtists:PFA0545c:mRNA
GeneID:813246 KEGG:pfa:PFA_0545c HOGENOM:HOG000283786
ProtClustDB:CLSZ2500531 Uniprot:Q8I233
Length = 1167
Score = 179 (68.1 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 41/95 (43%), Positives = 60/95 (63%)
Query: 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADS 370
++VLLL G G GKTTLA+V A H ++++E+N SDDR+ T+ I VV +NSV S
Sbjct: 385 ERVLLLGGSSGKGKTTLAYVIANHFKFNIIEINGSDDRNKETLIPFIESVVCINSVT--S 442
Query: 371 RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSN 405
+P +IDEIDG L ++ I+K ++ + K N
Sbjct: 443 KPNLCIIDEIDG-LSSTHQNIDSIMKFLNKKDKKN 476
Score = 168 (64.2 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 433 RPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492
RP+ICICND+Y +L+ LR+I+KV + ++ + R+ +IC+ E++K ++ A+ L +
Sbjct: 482 RPIICICNDIYHKSLKELRKISKVVIVENINIEMLKIRINYICDKENIKINNEAINKLID 541
Query: 493 YTECDIRSCLNTLQFL 508
+ DIRS LNT+ FL
Sbjct: 542 ICKSDIRSILNTIYFL 557
Score = 104 (41.7 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 28/99 (28%), Positives = 55/99 (55%)
Query: 140 EERVKKLDVRAH--SNSLTSE---PIDVLLQKVEQE---AFNKALNSSSEGQSDRSLPEK 191
E+R K+ + H +N++ E D++ K+++ +N ++ + G+ + +
Sbjct: 260 EKRKKQTNNYYHHNNNNINLEGKSKYDIIKNKLKESNPNMYNAFSSNMNRGKKNDHNDDN 319
Query: 192 PVVHEQL-WVDKYAPNSFTELLSDEQTNREVLLWLKQWD 229
++ + +V+KY F+ELL+DE N EVLLWLK+W+
Sbjct: 320 DDNNKNINFVEKYRAKYFSELLTDESINLEVLLWLKKWN 358
Score = 91 (37.1 bits), Expect = 4.2e-32, Sum P(4) = 4.2e-32
Identities = 45/189 (23%), Positives = 81/189 (42%)
Query: 509 DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRXXXXXXXXXXXEFDFLH 568
+KK I+N M++ + + KD + + ++ I+ K K K++ DF +
Sbjct: 617 NKKVVIIN-MELLNSYLFYKDANNNYIELLNMIYVKNKNKKITKKLLQDCH-----DFFY 670
Query: 569 SLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCL---GNSDLMHQYIMR-TQQM 624
++N +Y + I++N+L + ++D K CLD L N + + I+ + Q
Sbjct: 671 INLANEYNYAQSYYYIYDNLLSIPFNDFDFCKLSYCLDFLCFCDNMEYEQKNILNYSLQK 730
Query: 625 PLYVYQPPLAITVH-RLVSQIQKP--NLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPY-- 679
LY IT+H S IQ N +QR +N + D F + + Y
Sbjct: 731 TLYYVVYLFIITIHLNTNSHIQYILINNSHSNYFQRKKNQVQKIKDNFVNEQFGVITYKY 790
Query: 680 -ISRHLSTE 687
S+H +E
Sbjct: 791 IYSKHFFSE 799
Score = 48 (22.0 bits), Expect = 2.3e-26, Sum P(4) = 2.3e-26
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 249 RRHSTISQNKKQNDSSFTRKNRGNRWSNGNF 279
RR+ I N N S+ RGN +N NF
Sbjct: 50 RRNENIHNNNNYN-SNININKRGNYGNNENF 79
>UNIPROTKB|G4NIT3 [details] [associations]
symbol:MGG_04123 "Chromosome transmission fidelity protein
18" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 EMBL:CM001236 KO:K11269 RefSeq:XP_003719706.1
EnsemblFungi:MGG_04123T0 GeneID:2677613 KEGG:mgr:MGG_04123
Uniprot:G4NIT3
Length = 1028
Score = 294 (108.6 bits), Expect = 3.3e-31, Sum P(4) = 3.3e-31
Identities = 83/237 (35%), Positives = 118/237 (49%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILD--------- 359
P +K+L+L GPPGLGKTTLAHV AK GY V+E+NASDDRS + +I
Sbjct: 304 PHRKILMLTGPPGLGKTTLAHVCAKQAGYEVLEINASDDRSRDVVRGRIRTSLGTENVKT 363
Query: 360 VVQMNSVMAD----SRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKED 415
V Q SV +RP C+V+DE+DG + G+ E + K + +
Sbjct: 364 VEQHKSVDGKPPKVARPVCVVVDEVDGVVSGSGGSGEGGFVKALIDLVMTDQKNSASGAS 423
Query: 416 QPEXXXXXXXXXXASLLRPVICICNDLYAPALRSLRQ--IAK-VHVFIQPSVSRVVSRLK 472
+RP+I ICND+Y +LR LRQ +A+ VHV +P++ VV+RLK
Sbjct: 424 GSSKSNRRKKGDDFRQMRPLILICNDVYHVSLRPLRQSGLAEIVHVG-KPTIEAVVTRLK 482
Query: 473 HICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKE--ILNVMDIGSQVVGR 527
I + E + A L EY + S ++ + + E + VM +G V GR
Sbjct: 483 SIFDKEGIPCEKDAARKLCEYA-WGMNSGIDARRGAESTVEGDLRGVMVVGEWVAGR 538
Score = 124 (48.7 bits), Expect = 3.3e-31, Sum P(4) = 3.3e-31
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQN 257
LW +KY +F +L+ D+ TNR+VL WLK+WD VF +S + A RR + Q
Sbjct: 240 LWTEKYRAKNFMDLVGDDLTNRQVLRWLKKWDPLVFPHTAKSKA--AARASRRGAGHQQQ 297
Query: 258 KKQND 262
+ ++D
Sbjct: 298 QTEDD 302
Score = 61 (26.5 bits), Expect = 3.3e-31, Sum P(4) = 3.3e-31
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 928 FNEGFTNAVKRPVRMRDFL 946
+NEG NAV++P+ + +FL
Sbjct: 1007 YNEGLNNAVRKPISLEEFL 1025
Score = 43 (20.2 bits), Expect = 3.3e-31, Sum P(4) = 3.3e-31
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 652 PKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHL-STESLVEDSISPLLHILSPPTLRPVA 710
P++ R A + ++ +++ P + R S E + D + L+ ++SP ++PV
Sbjct: 746 PRADYEAREAGKHNRAMLQAIQAQLNPALGRAFRSPEHVATDFLPYLVRLVSP-NVKPVV 804
Query: 711 L 711
+
Sbjct: 805 V 805
Score = 39 (18.8 bits), Expect = 8.6e-31, Sum P(4) = 8.6e-31
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 605 LDCLGNSDLMHQYIMRTQQMPLYVYQPPL 633
LD L + M YI+ TQ Y + L
Sbjct: 870 LDALSTFETMGAYILSTQAPTRYAVRQVL 898
>UNIPROTKB|F8WCC1 [details] [associations]
symbol:CHTF18 "Chromosome transmission fidelity protein 18
homolog" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524
EMBL:AL031033 HGNC:HGNC:18435 IPI:IPI00927525
ProteinModelPortal:F8WCC1 SMR:F8WCC1 Ensembl:ENST00000440239
ArrayExpress:F8WCC1 Bgee:F8WCC1 Uniprot:F8WCC1
Length = 456
Score = 258 (95.9 bits), Expect = 5.0e-29, Sum P(2) = 5.0e-29
Identities = 51/76 (67%), Positives = 57/76 (75%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM- 367
P+QKV LLCGPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM SV+
Sbjct: 366 PKQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLG 425
Query: 368 ADSRPKCLVIDEIDGA 383
A +P CLVIDEIDGA
Sbjct: 426 AGGKPNCLVIDEIDGA 441
Score = 140 (54.3 bits), Expect = 5.0e-29, Sum P(2) = 5.0e-29
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 163 LLQKVEQEAFNKALNSSSEGQSDRSLP-----EKPVVHEQ-----LWVDKYAPNSFTELL 212
LLQ E + + L+S G+ + + P E+P + LWVD++AP +TELL
Sbjct: 239 LLQ--EAQKLSDTLHSLRSGEEEAAQPLGAPEEEPTDGQDASSHCLWVDEFAPRHYTELL 296
Query: 213 SDEQTNREVLLWLKQWDSCVFGSE 236
SD+ TNR +L WLK WD VFG E
Sbjct: 297 SDDFTNRCLLKWLKLWDLVVFGHE 320
>CGD|CAL0003295 [details] [associations]
symbol:CTF18 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051455 "attachment of
spindle microtubules to kinetochore involved in homologous
chromosome segregation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0035753 "maintenance
of DNA trinucleotide repeats" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 CGD:CAL0003295
GO:GO:0005524 GO:GO:0017111 eggNOG:COG0470 EMBL:AACQ01000049
EMBL:AACQ01000048 KO:K11269 RefSeq:XP_717864.1 RefSeq:XP_717930.1
ProteinModelPortal:Q5A889 STRING:Q5A889 GeneID:3640431
GeneID:3640503 KEGG:cal:CaO19.10749 KEGG:cal:CaO19.3239
Uniprot:Q5A889
Length = 853
Score = 231 (86.4 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 95/364 (26%), Positives = 162/364 (44%)
Query: 158 EPIDVLLQKVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQT 217
EP L++ QE + + S S P K V K AP S + DE+
Sbjct: 79 EPNQESLKQDSQELVVVDFDDMDQDFSPASKPSKTVKLFSGKQIKLAPRSTERVNIDEKQ 138
Query: 218 NREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSS--FTRKNRGNRW- 274
+ L DS + +R++ +E L ++S K + SS +T K + N +
Sbjct: 139 LSGIFL---DMDSLTNKANLRNSFKENRKKLSDPPSLSSIKHDSTSSQIWTEKYKPNSFI 195
Query: 275 ---SNGNFRXXXXXXXXXXXXKGI---QDSWHKKTRST-GPPEQKVLLLCGPPGLGKTTL 327
S GN R + D + + G P +K+LL+ GP G+GKTT+
Sbjct: 196 QLCSAGNDRQYRLILQWLKKWSPVVFGDDILNTENSDLLGRPYKKILLIHGPTGIGKTTI 255
Query: 328 AHVAAKHCGYHVVEVNASDD----------------RSSSTIENKILDVVQMNSVMADSR 371
+H+ AKH GY V E+NA++ ++S ++ KI++ + NS+ + +
Sbjct: 256 SHILAKHMGYTVQELNAANSMDTLPQASGGGSTAYTNAASALKLKIVNALTSNSIHSQGK 315
Query: 372 PKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXXXASL 431
P CL+IDEID +L + V+V+ +V A+ ++ K + ++ E L
Sbjct: 316 PSCLIIDEID-SLANINDVVKVLNDLVQADHRALNKKLKRSSTEEIEAKKKSKKKDIF-L 373
Query: 432 LRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESM--KTSSIALTT 489
RP+ICI ND+Y+ +S R ++P +S ++ K + S KT A+ +
Sbjct: 374 NRPIICIANDIYSQ--QSNRFGPNPMEKLRP-ISEIIQFRKPTTSKTSSGAKTGGNAIKS 430
Query: 490 LAEY 493
+ +Y
Sbjct: 431 VKDY 434
Score = 99 (39.9 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 75/369 (20%), Positives = 146/369 (39%)
Query: 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIG- 521
++ V L I E+M + + E E DIR+C+N +QF I++ ++
Sbjct: 427 AIKSVKDYLMQINKQENMGLDHQEIGDIVEICEGDIRACINHMQF---NSRIVDTIERRI 483
Query: 522 SQVVGRKDMSRSAFDIWKEIFQKRKTKRLRXXXXXXXXXXXEFDFLHSLISNRGDYDVIF 581
S+ D S F + ++F KR + + +L SN G +D +
Sbjct: 484 SKDTHLIDRQLSWFAMTDQLF-KRDPQLSKEENLARLFDGFMNGEGRALASNSGTFDRVL 542
Query: 582 DGIHENILQ-LQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRL 640
GI + L + D ++K + D + + I T + Y P + + L
Sbjct: 543 KGIFDKYLDTVHIQDDSLIKPCELSDWISYQSRFTR-INETNE-----YSPLVLLKASSL 596
Query: 641 VSQIQ-KPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISP--L 697
S I+ +P + +N E + KS + I I LS + V ++
Sbjct: 597 FSDIRVQPGNQ--TLIPNAKNLDFEHSQLLKS-NKNIIRSIENRLSVQMRVALGMNAENA 653
Query: 698 LHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVS 757
++ P + ++ H+ SAK K+DL V+ K L ++ +S
Sbjct: 654 ASLVLPCLAKILSPHM-SAKVKSDLN--VTEKKCLERIAGLVKELDLSLEYSKDLETGLS 710
Query: 758 TLSFDPPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRIMQVTIGKSEHLADGYKENM 817
+L +P ++ + Y + A VKQ ++ +Q + + + + + D K+++
Sbjct: 711 SLKLNPDLDSLTIYDNYLTT-IPAASVVKQT---QLRRQSLFPLITAELDRI-DVSKKSV 765
Query: 818 DLAGEEDSK 826
+ EE++K
Sbjct: 766 KRSLEENTK 774
Score = 54 (24.1 bits), Expect = 2.4e-21, Sum P(3) = 2.4e-21
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 927 KFNEGFTNAVKRPVRMRD 944
K+NEGF+NAV++ + D
Sbjct: 832 KYNEGFSNAVRKNIGWND 849
>GENEDB_PFALCIPARUM|PFB0895c [details] [associations]
symbol:PFB0895c "replication factor C subunit 1,
putative" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 163 (62.4 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 40/112 (35%), Positives = 63/112 (56%)
Query: 293 KGIQDSWHKKTRSTGPP-EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS 351
KGI+ K R + LL GP G+GKTT A + ++ GY+V+E NASD+R+ +
Sbjct: 388 KGIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTAKIVSEASGYNVIEFNASDERNKA 447
Query: 352 TIENKILDVVQMN-SVMADSRPK----CLVIDEIDGALGDGKGAVEVILKMV 398
+E KI ++ S+M+ + K C+++DE+DG KG ILK++
Sbjct: 448 AVE-KISEMATGGYSIMSLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLI 498
Score = 136 (52.9 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 39/120 (32%), Positives = 57/120 (47%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+ICICND +R+L F P + VV RL IC E + AL L E
Sbjct: 504 PIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWES 563
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVVG-RKDMSRSA--FDIWKEIFQKRKTKRL 550
T DIR LNTLQ L K + +D+ ++ K++ A F+I ++ ++ +L
Sbjct: 564 TCGDIRQMLNTLQLLSKTYTRIQFLDLKKELNNSNKNIQSLANPFEITLKLLNFNESSKL 623
Score = 87 (35.7 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQW-DSCVFG 234
QLWV+KY P + EL+ + Q ++ WL W D C+ G
Sbjct: 351 QLWVEKYRPKNLNELVGNNQNVIKLQNWLASWEDVCIKG 389
Score = 46 (21.3 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 706 LRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKN-TKSDPLLNNLGNEVSHDVSTLSFDPP 764
L + +++ K D+ Q + M YS+T + T++ P L E +D D
Sbjct: 762 LNYIYFKIMTPLHKADVNQAIQIMEEYSITREMVTENLPCLRLPNQENLYD----KLDTK 817
Query: 765 INEFITFKGYRSNHYV 780
+ T + Y S+H +
Sbjct: 818 LKSSFT-RLYNSSHVI 832
Score = 46 (21.3 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 706 LRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLS 760
+ P AL LL D+ Q+++ + S TY + L L N + ++ +L+
Sbjct: 552 MEPNALELLWESTCGDIRQMLNTLQLLSKTYTRIQFLDLKKELNNS-NKNIQSLA 605
Score = 40 (19.1 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 255 SQNKKQNDSSFTRKNRGNRWSNGN 278
S++KK++D+ + N N +N N
Sbjct: 48 SKSKKKSDAIYIDDNESNNNNNYN 71
Score = 38 (18.4 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 481 KTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILN-VMDIGSQVVGRKDMSRSAFDIWK 539
K S A+ L E T+C I N Q +K + + N D+ + + + + +I K
Sbjct: 488 KGGSTAILKLIEKTKCPIICICNDRQN-NKMRTLANKCYDLKFSMPQKNSVVKRLLEICK 546
Query: 540 E 540
+
Sbjct: 547 K 547
>UNIPROTKB|O96271 [details] [associations]
symbol:PFB0895c "Replication factor C subunit 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0003689 EMBL:AE001362 HSSP:P26996 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 PIR:D71603 RefSeq:XP_001349697.1
ProteinModelPortal:O96271 PRIDE:O96271
EnsemblProtists:PFB0895c:mRNA GeneID:812779 KEGG:pfa:PFB0895c
EuPathDB:PlasmoDB:PF3D7_0219600 HOGENOM:HOG000284296 OMA:YNYEKKD
ProtClustDB:CLSZ2733780 Uniprot:O96271
Length = 904
Score = 163 (62.4 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 40/112 (35%), Positives = 63/112 (56%)
Query: 293 KGIQDSWHKKTRSTGPP-EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS 351
KGI+ K R + LL GP G+GKTT A + ++ GY+V+E NASD+R+ +
Sbjct: 388 KGIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTAKIVSEASGYNVIEFNASDERNKA 447
Query: 352 TIENKILDVVQMN-SVMADSRPK----CLVIDEIDGALGDGKGAVEVILKMV 398
+E KI ++ S+M+ + K C+++DE+DG KG ILK++
Sbjct: 448 AVE-KISEMATGGYSIMSLNNRKLTKTCIIMDEVDGMSSGDKGGSTAILKLI 498
Score = 136 (52.9 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 39/120 (32%), Positives = 57/120 (47%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+ICICND +R+L F P + VV RL IC E + AL L E
Sbjct: 504 PIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGIMMEPNALELLWES 563
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVVG-RKDMSRSA--FDIWKEIFQKRKTKRL 550
T DIR LNTLQ L K + +D+ ++ K++ A F+I ++ ++ +L
Sbjct: 564 TCGDIRQMLNTLQLLSKTYTRIQFLDLKKELNNSNKNIQSLANPFEITLKLLNFNESSKL 623
Score = 87 (35.7 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQW-DSCVFG 234
QLWV+KY P + EL+ + Q ++ WL W D C+ G
Sbjct: 351 QLWVEKYRPKNLNELVGNNQNVIKLQNWLASWEDVCIKG 389
Score = 46 (21.3 bits), Expect = 2.6e-21, Sum P(4) = 2.6e-21
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 706 LRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKN-TKSDPLLNNLGNEVSHDVSTLSFDPP 764
L + +++ K D+ Q + M YS+T + T++ P L E +D D
Sbjct: 762 LNYIYFKIMTPLHKADVNQAIQIMEEYSITREMVTENLPCLRLPNQENLYD----KLDTK 817
Query: 765 INEFITFKGYRSNHYV 780
+ T + Y S+H +
Sbjct: 818 LKSSFT-RLYNSSHVI 832
Score = 46 (21.3 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 706 LRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLS 760
+ P AL LL D+ Q+++ + S TY + L L N + ++ +L+
Sbjct: 552 MEPNALELLWESTCGDIRQMLNTLQLLSKTYTRIQFLDLKKELNNS-NKNIQSLA 605
Score = 40 (19.1 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 255 SQNKKQNDSSFTRKNRGNRWSNGN 278
S++KK++D+ + N N +N N
Sbjct: 48 SKSKKKSDAIYIDDNESNNNNNYN 71
Score = 38 (18.4 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 481 KTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILN-VMDIGSQVVGRKDMSRSAFDIWK 539
K S A+ L E T+C I N Q +K + + N D+ + + + + +I K
Sbjct: 488 KGGSTAILKLIEKTKCPIICICNDRQN-NKMRTLANKCYDLKFSMPQKNSVVKRLLEICK 546
Query: 540 E 540
+
Sbjct: 547 K 547
>POMBASE|SPBC23E6.07c [details] [associations]
symbol:rfc1 "DNA replication factor C complex subunit
Rfc1" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006272 "leading strand elongation" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0003689 "DNA clamp loader activity" evidence=IC]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357
PomBase:SPBC23E6.07c Pfam:PF00533 GO:GO:0005524 GO:GO:0005730
GO:GO:0051301 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0007049
GO:GO:0000790 GO:GO:0043596 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389 KO:K10754
eggNOG:COG5275 EMBL:AB027931 PIR:T39941 RefSeq:NP_596607.1
ProteinModelPortal:O60182 IntAct:O60182 STRING:O60182
EnsemblFungi:SPBC23E6.07c.1 GeneID:2540426 KEGG:spo:SPBC23E6.07c
HOGENOM:HOG000164552 OMA:KLRMDER OrthoDB:EOG4WDHM8 NextBio:20801553
Uniprot:O60182
Length = 934
Score = 169 (64.5 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 51/126 (40%), Positives = 70/126 (55%)
Query: 293 KGIQDSWHKKTRST----GPPE---QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS 345
K +QD +HK +S GP K +LL GPPG+GKTT AH+ AK GY V+E+NAS
Sbjct: 385 KWLQD-YHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNAS 443
Query: 346 DDRSSSTIENKILDVVQMNSV------------MADSRPKCLVIDEIDG-ALGD--GKGA 390
D RS ++ ++ V S+ MA SR L++DEIDG + GD G G
Sbjct: 444 DTRSKRLLDEQLFGVTDSQSLAGYFGTKANPVDMAKSR-LVLIMDEIDGMSSGDRGGVGQ 502
Query: 391 VEVILK 396
+ +I+K
Sbjct: 503 LNMIIK 508
Score = 111 (44.1 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+ICICND P LR L + F +P + + SR+ I E +K S A+ L +
Sbjct: 513 PIICICNDRAHPKLRPLDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQG 572
Query: 494 TECDIRSCLNTL 505
T+ D+R +N L
Sbjct: 573 TQSDMRQIINLL 584
Score = 80 (33.2 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 42/153 (27%), Positives = 67/153 (43%)
Query: 48 NGHKRPR-SDTPKSPIDVDEPQFDEKRSRIVDNDDEDWLRYSPPPPQARDDARVEVEEKF 106
N K+P+ S TP SP +P+ K+ RIV +DDED + P ++ + E +
Sbjct: 14 NAQKKPKVSPTPTSP----KPKRSLKKKRIVLSDDEDGTIENSKVPASKSKVQKRNESED 69
Query: 107 VSRYASEI--DGDCLPVTAPSGGDRVYVKISSSGVEERVK-KLDVRAHSNSLTSEPIDVL 163
+S I + D L G D V ++ + + R SN T+ DV+
Sbjct: 70 ISHSLPSIVHEDDKLV-----GSDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVV 124
Query: 164 LQKVEQEAFNKALNSSSEGQSDRSLPEKPVVHE 196
V+ E F L+++S+ KPVVH+
Sbjct: 125 -HPVKTENFANDLDTTSDS--------KPVVHQ 148
Score = 71 (30.1 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 165 QKVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLW 224
QK EQE K L + + +P Q+W KYAP S ++ ++ +++ W
Sbjct: 331 QKKEQEE-KKILETVARMDDSNKKESQP---SQIWTSKYAPTSLKDICGNKGVVQKLQKW 386
Query: 225 LKQW 228
L+ +
Sbjct: 387 LQDY 390
Score = 40 (19.1 bits), Expect = 4.0e-11, Sum P(3) = 4.0e-11
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 706 LRPVALHLLSAKEKNDLAQLVSAMVSYSLT 735
L P A+ L ++D+ Q+++ + +Y L+
Sbjct: 561 LSPQAVDQLVQGTQSDMRQIINLLSTYKLS 590
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 219 (82.2 bits), Expect = 9.8e-18, Sum P(3) = 9.8e-18
Identities = 73/244 (29%), Positives = 114/244 (46%)
Query: 299 WHKKTRSTGPPE---QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIEN 355
W + ST P + + +LL GPPG+GKT+ A + K G+ +E+NASD RS S I+
Sbjct: 876 WLDQWNSTAPRDASKKNAVLLSGPPGIGKTSAALLICKQKGFEAIELNASDARSKSEIK- 934
Query: 356 KILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKED 415
++L S ++D++ I + G G K V A +K TA +
Sbjct: 935 RLL------SGVSDNQN----ITKFFGTTNQDTG------KDVQANKKIKTAIILDEIDG 978
Query: 416 QPEXXXXXXXXXXASLLR----PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRL 471
L++ P IC+CND Y+ + SLR +P++++V SRL
Sbjct: 979 SSGNSDRGGIAEIIGLIKKSKMPFICLCNDYYSSKVTSLRNHCMDLKLRKPTLNQVSSRL 1038
Query: 472 KHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMS 531
I +E MK SS + + + DIR +NTLQ + + K N ++ +Q + KD
Sbjct: 1039 LAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINTLQMMSRSKRDYNNDNV-TQSLQEKDFD 1097
Query: 532 RSAF 535
S F
Sbjct: 1098 ISPF 1101
Score = 93 (37.8 bits), Expect = 9.8e-18, Sum P(3) = 9.8e-18
Identities = 30/117 (25%), Positives = 48/117 (41%)
Query: 114 IDGDCLPVTAPSGGDRVYVKISSSGVEERVKKLDVRAHSNSLTSEPIDVLLQKVEQEAFN 173
I G LPV + SGG +K S V + + TS P +
Sbjct: 767 IKGPSLPVRSGSGGSSTGIKGPSLPVRSGSGGTTSSSPPLTFTSSPPTSTTTATTTTTSS 826
Query: 174 KALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDS 230
++ +S +S+ P H+ LWV+KY P +++ + +E WL QW+S
Sbjct: 827 PPISMASV-IVPKSISTIPKGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNS 882
Score = 46 (21.3 bits), Expect = 9.8e-18, Sum P(3) = 9.8e-18
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 804 GKSEHLADGYKE----NMDLAGEEDSKTESAKT-NNAAVSAKLIEKSKSLPYS 851
G ++A+GY+E + + EED +TE + N + + KS + P S
Sbjct: 1336 GGGTNIAEGYEEVEGESQNQIEEEDEETEEKDSLPNLVKKSSVKSKSDTKPKS 1388
Score = 41 (19.5 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 129 RVYVKISSSGVEERVKKLDVRAHSNSLTS 157
++ +K +EE KK+++ + ++S++S
Sbjct: 223 KIKLKTPEKKIEEPEKKVEIPSSTSSISS 251
Score = 40 (19.1 bits), Expect = 4.1e-17, Sum P(3) = 4.1e-17
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 905 SQDNDNAVQKATVERDSLPLLFK 927
SQ+ + T E+DSLP L K
Sbjct: 1352 SQNQIEEEDEETEEKDSLPNLVK 1374
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 135 (52.6 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV----- 366
K LL GPPG+GKTT A + + GY VE+NAS RS ++++ I + + S+
Sbjct: 638 KAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYT 697
Query: 367 ---MADSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAER 402
S L++DE+DG G + +G ++ ++ ++ +
Sbjct: 698 GASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKQSK 737
Score = 113 (44.8 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+IC+CND +RSL F +P V ++ + I E +K AL +
Sbjct: 739 PIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVILA 798
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVVG-RKDMSRSAFDIWKEIF 542
+ DIR L+ L K +++ + +KDM FD+ +++F
Sbjct: 799 SNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLGPFDVCRKVF 848
Score = 75 (31.5 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 198 LWVDKYAPNSFTELLS---DEQTNREVLLWLKQW 228
LWVDKY P S L+ D+ ++L WL+ W
Sbjct: 577 LWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQSW 610
Score = 67 (28.6 bits), Expect = 2.1e-16, Sum P(4) = 2.1e-16
Identities = 27/98 (27%), Positives = 43/98 (43%)
Query: 52 RPRSDTPKSPIDVDEPQFDEKRSRIVDNDDEDWLRYSPPPPQARDDARVEVEEKFVSRYA 111
RP+ +PKS ++P K+ IVD+D E+ + ++ + + E+K Y
Sbjct: 37 RPKVKSPKSD---EKPSGKRKKRVIVDSDSEEEKKVKTK--KSTKETSIPTEKKHPVTYV 91
Query: 112 SEIDGD----CLPVTAPS-GGDRVYVKISSSGVEERVK 144
S+ D D L P G K S SG ++VK
Sbjct: 92 SDSDSDGTFETLKKPKPKENGTAKGKKESDSGKAKQVK 129
Score = 46 (21.3 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 30/137 (21%), Positives = 59/137 (43%)
Query: 59 KSPIDVDEPQFDEKRSRIVDNDDEDWLRYSPPPPQARDDARVEVEEKFVSRYASEIDGDC 118
K+P++ DE DE ++ + D++ L Q DD E+F +R + +D
Sbjct: 195 KAPLETDESLSDEAIAKELQMDEDKELE-----KQIHDD------EEF-ARTLAMLDDAP 242
Query: 119 LPVTAPSGGDRVYV-KISSSGVEERVK-KLDVRAHSNSLTSEPIDVLLQKVEQEAFNKAL 176
LP A D + K SS + +K K D+ ++ + + +++ ++E +
Sbjct: 243 LPKKARV--DSISPSKSSSQAIASDIKPKKDLSPKTSPVKTSSKLAQMKRRQEERDEQGK 300
Query: 177 NSSSEGQSDRSLPEKPV 193
E Q S ++P+
Sbjct: 301 KDKGEKQIKISPKKEPI 317
Score = 37 (18.1 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 19/111 (17%), Positives = 42/111 (37%)
Query: 167 VEQEAFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLK 226
V Q+A N + ++S++ + + +P V +K + ++ D + E + K
Sbjct: 13 VAQKASNGSTSTSTDEEQKKKQKSRPKVKSPKSDEKPSGKRKKRVIVDSDSEEEKKVKTK 72
Query: 227 QWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNG 277
+ST E + ++H + +D +F + NG
Sbjct: 73 -----------KSTKETSIPTEKKHPVTYVSDSDSDGTFETLKKPKPKENG 112
>UNIPROTKB|P35251 [details] [associations]
symbol:RFC1 "Replication factor C subunit 1" species:9606
"Homo sapiens" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0007004 "telomere
maintenance via telomerase" evidence=TAS] [GO:0008047 "enzyme
activator activity" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0043085 "positive regulation of
catalytic activity" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0006355
GO:GO:0006351 GO:GO:0008047 GO:GO:0000084 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH471069 GO:GO:0007004
GO:GO:0000722 Pathway_Interaction_DB:faspathway Reactome:REACT_383
GO:GO:0006283 GO:GO:0003689 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754
eggNOG:COG5275 EMBL:L23320 EMBL:Z22642 EMBL:AF040250 EMBL:AY600371
EMBL:AK291612 EMBL:BC035297 EMBL:BC051751 EMBL:BC051786
IPI:IPI00375358 IPI:IPI00375359 PIR:A49651 PIR:JN0599
RefSeq:NP_001191676.1 RefSeq:NP_002904.3 UniGene:Hs.507475 PDB:2EBU
PDB:2K6G PDB:2K7F PDBsum:2EBU PDBsum:2K6G PDBsum:2K7F
ProteinModelPortal:P35251 SMR:P35251 IntAct:P35251 STRING:P35251
PhosphoSite:P35251 DMDM:56757608 PaxDb:P35251 PRIDE:P35251
DNASU:5981 Ensembl:ENST00000349703 Ensembl:ENST00000381897
GeneID:5981 KEGG:hsa:5981 UCSC:uc003gtx.2 UCSC:uc003gty.2 CTD:5981
GeneCards:GC04M039291 HGNC:HGNC:9969 HPA:CAB009520 MIM:102579
neXtProt:NX_P35251 PharmGKB:PA34338 HOGENOM:HOG000013116
HOVERGEN:HBG004167 InParanoid:P35251 OMA:GQINFPG OrthoDB:EOG4D26P3
ChiTaRS:RFC1 EvolutionaryTrace:P35251 GenomeRNAi:5981 NextBio:23281
PMAP-CutDB:P35251 ArrayExpress:P35251 Bgee:P35251 CleanEx:HS_RFC1
Genevestigator:P35251 GermOnline:ENSG00000035928 Uniprot:P35251
Length = 1148
Score = 143 (55.4 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM---- 367
K LL GPPG+GKTT A + + GY VE+NASD RS S+++ + + + S+
Sbjct: 645 KAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFYS 704
Query: 368 -----ADSRPKCLVIDEIDGALG-DGKGAVEVILKMV 398
+ S L++DE+DG G + +G ++ ++ ++
Sbjct: 705 NGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLI 741
Score = 102 (41.0 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+IC+CND P +RSL F +P V ++ + I E +K A+ +
Sbjct: 747 PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILG 806
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVV-GRKDMSRSAFDIWKEIF 542
DIR L+ L + + L + +KD+ FD+ +++F
Sbjct: 807 ANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVARKVF 856
Score = 93 (37.8 bits), Expect = 1.2e-15, Sum P(3) = 1.2e-15
Identities = 32/105 (30%), Positives = 47/105 (44%)
Query: 133 KISSSGVEERVKKLDVRAHSNSLTS---EPIDVLLQKV---EQEAFNKALNSSSEGQSDR 186
KIS S E KK + +SL + DV + + EQ A + +S + +D
Sbjct: 516 KISPSKKESESKKSRPTSKRDSLAKTIKKETDVFWKSLDFKEQVAEETSGDSKARNLADD 575
Query: 187 SLPEKPVVHEQLWVDKYAPNSFTELLS---DEQTNREVLLWLKQW 228
S K V LWVDKY P S ++ D+ ++L WL+ W
Sbjct: 576 SSENK--VENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNW 618
>WB|WBGene00004337 [details] [associations]
symbol:rfc-1 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005663
"DNA replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006260 GO:GO:0000003 GO:GO:0006974 eggNOG:COG0470
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:Z75532 PIR:T20230
RefSeq:NP_001256606.1 ProteinModelPortal:Q18841 SMR:Q18841
IntAct:Q18841 MINT:MINT-228102 STRING:Q18841 PaxDb:Q18841
EnsemblMetazoa:C54G10.2a GeneID:179967 KEGG:cel:CELE_C54G10.2
UCSC:C54G10.2 CTD:179967 WormBase:C54G10.2a HOGENOM:HOG000017534
InParanoid:Q18841 OMA:DYAPMLR NextBio:907580 Uniprot:Q18841
Length = 839
Score = 136 (52.9 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 35/114 (30%), Positives = 54/114 (47%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+ICICND P +R+L F +P V + SR+ IC+ E MK L + E
Sbjct: 446 PIICICNDRQHPKIRTLANYCYDLRFPKPRVETIRSRMMTICSQEKMKIGKEELDEIIEL 505
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKT 547
+ D+R + LQ K +G+++ +KDM+ AF + + R T
Sbjct: 506 SGHDVRQTIYNLQMRSK--------GVGAKI-NQKDMAVDAFSAARRLLDSRTT 550
Score = 124 (48.7 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 36/97 (37%), Positives = 51/97 (52%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV-MADS 370
K LL G PG+GKTT A++A + G +VE+NASD RS +E KI ++ + +
Sbjct: 341 KAALLSGSPGVGKTTCAYMACQQLGLQLVEMNASDVRSKKHLEAKIGELSGSHQIEQFFG 400
Query: 371 RPKC-----------LVIDEIDGALG--DGKGAVEVI 394
KC L++DE+DG G D G E+I
Sbjct: 401 AKKCAPQDNQKVHHILIMDEVDGMSGNEDRAGISELI 437
Score = 69 (29.3 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 23/94 (24%), Positives = 39/94 (41%)
Query: 140 EERVKKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQL- 198
+E KK + T + + ++K + +++ +SS S KP
Sbjct: 219 KEFPKKQSIPVKKEKETPQKKALSVKKDPPKVTSESSSSSQVSTSSVVFQPKPSGPPPAL 278
Query: 199 -WVDKYAPNSFTELLS---DEQTNREVLLWLKQW 228
WVDKY P EL+ D+ ++L W+K W
Sbjct: 279 SWVDKYKPKRMGELVGQNGDKSPINKLLEWIKDW 312
Score = 43 (20.2 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 20/85 (23%), Positives = 34/85 (40%)
Query: 663 MEKMDIFKSWHSKIPPYISRHLSTESLVEDS---ISPLLHILSP---PTLRPVALHLLSA 716
++ M F SW K R + LV+ + +S H + P LR L
Sbjct: 635 LKAMIQFPSWLGKNSTAGKRKRLLQQLVQHTHLKVSAGTHSFATDYAPMLRQKITKPLLE 694
Query: 717 KEKNDLAQLVSAMVSYSLTYKNTKS 741
E + + ++S M Y L +T++
Sbjct: 695 HEADGIPDVISTMTEYDLIKDDTEA 719
>TAIR|locus:504956441 [details] [associations]
symbol:RFC1 "replication factor C1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0031935
"regulation of chromatin silencing" evidence=IMP] [GO:0051570
"regulation of histone H3-K9 methylation" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0007126
"meiosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR010372 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF06144 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0009737 GO:GO:0007126 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006260 GO:GO:0006974 GO:GO:0051570
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
GO:GO:0003887 EMBL:AL589883 HSSP:P26996 GO:GO:0009360
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 OMA:KLRMDER
GO:GO:0031935 EMBL:BT014965 IPI:IPI00543426 RefSeq:NP_680188.1
UniGene:At.45635 ProteinModelPortal:Q9C587 SMR:Q9C587 STRING:Q9C587
PaxDb:Q9C587 PRIDE:Q9C587 EnsemblPlants:AT5G22010.1 GeneID:832261
KEGG:ath:AT5G22010 TAIR:At5g22010 HOGENOM:HOG000085054
InParanoid:Q9C587 PhylomeDB:Q9C587 ProtClustDB:CLSN2690182
Genevestigator:Q9C587 Uniprot:Q9C587
Length = 956
Score = 217 (81.4 bits), Expect = 8.5e-15, Sum P(3) = 8.5e-15
Identities = 72/234 (30%), Positives = 108/234 (46%)
Query: 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIE-NKILDVVQMNSVMAD 369
+K +LL G PG+GKTT A + ++ G+ VEVNASD R + K + NSV
Sbjct: 393 KKAVLLSGTPGIGKTTSAKLVSQMLGFQAVEVNASDSRGKANSNIAKGIGGSNANSV--- 449
Query: 370 SRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXXXA 429
K LV +E A D + +L M + S + VA
Sbjct: 450 ---KELVNNEAMAANFDRSKHPKTVLIMDEVDGMSAGDRGGVAD---------LIASIKI 497
Query: 430 SLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTT 489
S + P+ICICND Y+ L+SL + +P+ ++ RL HI E ++ + IAL
Sbjct: 498 SKI-PIICICNDRYSQKLKSLVNYCLPLNYRKPTKQQMAKRLMHIAKAEGLEINEIALEE 556
Query: 490 LAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGR-KDMSRSAFDIWKEIF 542
LAE DIR +N LQ++ ++ DI +++ KD S F ++F
Sbjct: 557 LAERVNGDIRLAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDKLF 610
Score = 63 (27.2 bits), Expect = 8.5e-15, Sum P(3) = 8.5e-15
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 168 EQEAFNKALNSSSEGQSDRSLPEKPVVHEQL-WVDKYAPNSFTELLSDEQTNREVLLWLK 226
++E K L SS + + + ++ L W +KY P E++ ++ ++ WL
Sbjct: 310 KEETRGKPLAKSSPKKVPPAKGKNKIIETSLPWTEKYRPKVPNEIVGNQSLVTQLHNWLS 369
Query: 227 QW 228
W
Sbjct: 370 HW 371
Score = 43 (20.2 bits), Expect = 8.5e-15, Sum P(3) = 8.5e-15
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 63 DVDEPQFDEKRSRIVDNDDEDW 84
D+ +P+ K +++VD+DD+D+
Sbjct: 88 DLVKPR-PRKVTKVVDDDDDDF 108
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 74 SRIVDNDDED 83
S+ VDNDD+D
Sbjct: 135 SKTVDNDDDD 144
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 153 (58.9 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 39/122 (31%), Positives = 64/122 (52%)
Query: 298 SWHK--------KTRSTGPPEQ----KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS 345
SWHK KT +G + K LL GPPG+GKTT A + K GY VE+NAS
Sbjct: 615 SWHKNTSEDGQAKTNKSGGKDDGASFKAALLSGPPGVGKTTTASLVCKELGYSYVELNAS 674
Query: 346 DDRSSSTIENKILDVVQMNSVM--------ADSRPKCLVIDEIDGALG-DGKGAVEVILK 396
D RS ++++ + + + S+ + S L++DE+DG G + +G ++ ++
Sbjct: 675 DTRSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELIG 734
Query: 397 MV 398
++
Sbjct: 735 LI 736
Score = 105 (42.0 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 28/110 (25%), Positives = 49/110 (44%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+IC+CND P +RSL F +P + ++ + I E +K A+ +
Sbjct: 742 PIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILA 801
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVV-GRKDMSRSAFDIWKEIF 542
DIR L+ L K + L + + +KD+ FD+ +++F
Sbjct: 802 ANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVF 851
Score = 68 (29.0 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 25/68 (36%), Positives = 31/68 (45%)
Query: 165 QKVEQ-EAFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSD--EQTNREV 221
Q VE+ EA N SE DR+ LWVDKY P S ++ EQ+
Sbjct: 556 QTVEKKEAPKPKGNFVSERSEDRT-------ETLLWVDKYKPVSLKAIIGQQGEQSCANK 608
Query: 222 LL-WLKQW 228
LL WL+ W
Sbjct: 609 LLRWLRSW 616
Score = 39 (18.8 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 135 SSSGVEERVKKLD-VRAHSNSLTSEPIDVLLQKVEQEAFNKALN-SSSEGQSDRSLPEK 191
SS V ER K+ V+A +NS +V Q + + L+ SS+G++ R+L EK
Sbjct: 253 SSPNVTERYKQSQRVKA-ANSAH----EVKEQTKSENSKEPNLHPQSSDGKTARALTEK 306
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 153 (58.9 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 39/122 (31%), Positives = 64/122 (52%)
Query: 298 SWHK--------KTRSTGPPEQ----KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS 345
SWHK KT +G + K LL GPPG+GKTT A + K GY VE+NAS
Sbjct: 619 SWHKNTSEDGQAKTNKSGGKDDGASFKAALLSGPPGVGKTTTASLVCKELGYSYVELNAS 678
Query: 346 DDRSSSTIENKILDVVQMNSVM--------ADSRPKCLVIDEIDGALG-DGKGAVEVILK 396
D RS ++++ + + + S+ + S L++DE+DG G + +G ++ ++
Sbjct: 679 DTRSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELIG 738
Query: 397 MV 398
++
Sbjct: 739 LI 740
Score = 105 (42.0 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 28/110 (25%), Positives = 49/110 (44%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+IC+CND P +RSL F +P + ++ + I E +K A+ +
Sbjct: 746 PIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIAFKEGLKIPPPAMNEIILA 805
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVV-GRKDMSRSAFDIWKEIF 542
DIR L+ L K + L + + +KD+ FD+ +++F
Sbjct: 806 ANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVF 855
Score = 68 (29.0 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 25/68 (36%), Positives = 31/68 (45%)
Query: 165 QKVEQ-EAFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSD--EQTNREV 221
Q VE+ EA N SE DR+ LWVDKY P S ++ EQ+
Sbjct: 560 QTVEKKEAPKPKGNFVSERSEDRT-------ETLLWVDKYKPVSLKAIIGQQGEQSCANK 612
Query: 222 LL-WLKQW 228
LL WL+ W
Sbjct: 613 LLRWLRSW 620
Score = 39 (18.8 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 135 SSSGVEERVKKLD-VRAHSNSLTSEPIDVLLQKVEQEAFNKALN-SSSEGQSDRSLPEK 191
SS V ER K+ V+A +NS +V Q + + L+ SS+G++ R+L EK
Sbjct: 255 SSPNVTERYKQSQRVKA-ANSAH----EVKEQTKSENSKEPNLHPQSSDGKTARALTEK 308
>UNIPROTKB|F1S4I7 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:FP089679 Ensembl:ENSSSCT00000009614
Uniprot:F1S4I7
Length = 1146
Score = 143 (55.4 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM---- 367
K LL GPPG+GKTT A + + GY VE+NASD RS ++++ I + + S+
Sbjct: 644 KAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKEIIAESLNNTSIKGFYS 703
Query: 368 -----ADSRPKCLVIDEIDGALG-DGKGAVEVILKMV 398
+ S L++DE+DG G + +G ++ ++ ++
Sbjct: 704 SGAAHSVSTKHALIMDEVDGMAGNEDRGGIQELIGLI 740
Score = 101 (40.6 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+IC+CND P +RSL F +P V ++ + I E +K A+ +
Sbjct: 746 PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILG 805
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVV-GRKDMSRSAFDIWKEIF 542
DIR L+ L + + L + +KD+ FD+ +++F
Sbjct: 806 ANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKLGPFDVARKVF 855
Score = 82 (33.9 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 45/165 (27%), Positives = 70/165 (42%)
Query: 74 SRIVDNDDEDWLRYSPPPPQARDDARVEVEEKFVSRYASEIDGDCLPVTAPSGGDRVYVK 133
++I+D D L + P +++ + VE E K + S+++ P D+ K
Sbjct: 465 TKIIDEDGLLNLIRTMPGKKSKYEIAVEAEMK---KEKSKLE------RTPQKKDQGKRK 515
Query: 134 ISSSGVEERVKKLDV---RAHS-NSLTSEPIDVL---LQKVEQEAFNKALNSSSEGQSDR 186
+S + E KK R S NS+ E V L EQ A +S + +D
Sbjct: 516 VSPTKKESESKKCKQTPKRESSINSIKKET-SVFRKGLDFKEQVAEETDGDSRARNLADD 574
Query: 187 SLPEKPVVHEQLWVDKYAPNSFTELLS---DEQTNREVLLWLKQW 228
S K V LWVDKY P S ++ D+ ++L WL+ W
Sbjct: 575 SSENK--VENLLWVDKYKPASLKTIIGQQGDQSCANKLLRWLQNW 617
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 141 (54.7 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM---- 367
K LL GPPG+GKTT A + + GY VE+NASD RS ++++ + + + S+
Sbjct: 628 KAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAIVAESLNNTSIKGFYT 687
Query: 368 ADSRPK-----CLVIDEIDGALG-DGKGAVEVILKMV 398
+ + P L++DE+DG G + +G ++ ++ ++
Sbjct: 688 SGASPSVSARHALIMDEVDGMAGNEDRGGIQELIGLI 724
Score = 107 (42.7 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 28/110 (25%), Positives = 50/110 (45%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+IC+CND P +RSL F +P V ++ S + I E +K A+ +
Sbjct: 730 PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILG 789
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVV-GRKDMSRSAFDIWKEIF 542
D+R L+ L + ++L + +KD+ FD+ +++F
Sbjct: 790 ANQDVRQVLHNLSMWCAQSKVLTYDQAKADSQRAKKDIRLGPFDVTRKVF 839
Score = 74 (31.1 bits), Expect = 4.5e-14, Sum P(3) = 4.5e-14
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 198 LWVDKYAPNSFTELLS---DEQTNREVLLWLKQW 228
LWVDKY P S ++ D+ ++L WL+ W
Sbjct: 569 LWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRNW 602
>SGD|S000005743 [details] [associations]
symbol:RFC1 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006272 "leading strand elongation"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 SGD:S000005743 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 EMBL:BK006948 GO:GO:0051301 GO:GO:0006298 EMBL:X92441
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0000278 GO:GO:0003689
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 PDB:1SXJ PDBsum:1SXJ
KO:K10754 eggNOG:COG5275 HOGENOM:HOG000164552 OMA:KLRMDER
OrthoDB:EOG4WDHM8 EMBL:U03102 EMBL:U26027 EMBL:Z75125 PIR:S44763
RefSeq:NP_014860.1 ProteinModelPortal:P38630 SMR:P38630
DIP:DIP-2527N IntAct:P38630 MINT:MINT-619267 STRING:P38630
PaxDb:P38630 PeptideAtlas:P38630 EnsemblFungi:YOR217W GeneID:854392
KEGG:sce:YOR217W CYGD:YOR217w EvolutionaryTrace:P38630
NextBio:976553 Genevestigator:P38630 GermOnline:YOR217W
Uniprot:P38630
Length = 861
Score = 135 (52.6 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 33/106 (31%), Positives = 57/106 (53%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA--- 368
+ +L GPPG+GKTT AH+ A+ GY ++E NASD RS + + + + + SV+
Sbjct: 347 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 406
Query: 369 --------DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNT 406
+ + +++DE+DG G +G V + + RK++T
Sbjct: 407 HNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC---RKTST 449
Score = 102 (41.0 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 28/105 (26%), Positives = 46/105 (43%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+I ICN+ P +R ++ F +P + + SRL I E K + L +
Sbjct: 450 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 509
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGS-QVVGRKDMSRSAFDI 537
T DIR +N L + + +N +I K+++ FDI
Sbjct: 510 TRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDI 554
Score = 81 (33.6 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 140 EERVKKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQ-- 197
E+ +KL+ + H N T E ++L++K E+ + A S G +R VV E+
Sbjct: 244 EKARRKLEEQ-H-NIATKEA-ELLVKKEEERSKKLAATRVSGGHLERD----NVVREEDK 296
Query: 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDS 230
LW KYAP + ++ ++ + ++ WL W++
Sbjct: 297 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWEN 329
>MGI|MGI:97891 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 MGI:MGI:97891 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0006260 GO:GO:0006351
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 CTD:5981
HOVERGEN:HBG004167 OrthoDB:EOG4D26P3 ChiTaRS:RFC1 EMBL:U01222
EMBL:X72711 EMBL:U36441 EMBL:U07157 EMBL:U15037 IPI:IPI00378168
IPI:IPI00896013 PIR:A49393 RefSeq:NP_035388.2 UniGene:Mm.148877
ProteinModelPortal:P35601 SMR:P35601 STRING:P35601
PhosphoSite:P35601 PaxDb:P35601 PRIDE:P35601 GeneID:19687
KEGG:mmu:19687 UCSC:uc008xni.2 UCSC:uc008xnj.2 InParanoid:P35601
NextBio:297020 CleanEx:MM_RFC1 Genevestigator:P35601
GermOnline:ENSMUSG00000029191 Uniprot:P35601
Length = 1131
Score = 142 (55.0 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 31/97 (31%), Positives = 56/97 (57%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM---- 367
K LL GPPG+GKTT A + + GY VE+NASD RS ++++ + + + S+
Sbjct: 629 KAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYT 688
Query: 368 ADSRPK-----CLVIDEIDGALG-DGKGAVEVILKMV 398
+ + P L++DE+DG G + +G ++ ++ ++
Sbjct: 689 SGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLI 725
Score = 103 (41.3 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 28/110 (25%), Positives = 49/110 (44%)
Query: 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
P+IC+CND P +RSL F +P V ++ S + I E +K A+ +
Sbjct: 731 PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILG 790
Query: 494 TECDIRSCLNTLQFLDKKKEILNVMDIGSQVV-GRKDMSRSAFDIWKEIF 542
D+R L+ L + + L + +KD+ FD+ +++F
Sbjct: 791 ANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRAKKDIRLGPFDVTRKVF 840
Score = 80 (33.2 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 30/108 (27%), Positives = 47/108 (43%)
Query: 124 PSGGDRVYVKISSSGVEERVKKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSSEGQ 183
P D+ KIS + E KK + NS P+ + K E + L+ E
Sbjct: 505 PQKNDQGKRKISPAKKESESKKCKLTLLKNS----PMKAV--KKEASTCPRGLDVK-ETH 557
Query: 184 SDRSLPEKPVVHEQLWVDKYAPNSFTELLS---DEQTNREVLLWLKQW 228
+RS ++ + LWVDKY P S ++ D+ ++L WL+ W
Sbjct: 558 GNRSSNKEECL---LWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNW 602
Score = 39 (18.8 bits), Expect = 7.4e-14, Sum P(4) = 7.4e-14
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 63 DVDEPQFDEKRSRIV-DNDDE 82
D +P+ K+ RI+ D+D E
Sbjct: 51 DASKPKQHSKKKRIIYDSDSE 71
>UNIPROTKB|E2QW76 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AAEX03002535
Ensembl:ENSCAFT00000025512 Uniprot:E2QW76
Length = 1152
Score = 167 (63.8 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 59/232 (25%), Positives = 97/232 (41%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSR 371
K LL GPPG+GKTT A + + GY VE+NASD RS ++++ + + + S+
Sbjct: 643 KAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKEVVAESLNNTSITGFYS 702
Query: 372 PKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEXXXXXXXXXXASL 431
D ++G K A+ I+ V ED+ +
Sbjct: 703 TSQHGSDGAAHSVGS-KHAL--IMDEVDGM---------AGNEDRGGIQELIGLIKHTKI 750
Query: 432 LRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491
P+IC+CND P +RSL F +P V ++ + I E +K A+ +
Sbjct: 751 --PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEII 808
Query: 492 EYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVV-GRKDMSRSAFDIWKEIF 542
DIR L+ L + + L + +KD+ FD+ +++F
Sbjct: 809 LGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIRLGPFDVARKVF 860
Score = 78 (32.5 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 37/162 (22%), Positives = 67/162 (41%)
Query: 74 SRIVDNDDEDWLRYSPPPPQARDDARVEVEEKFVSRYASEIDGDCLPVTAPSGGDRVYVK 133
+ I+D D L + P +++ + VE E K + S+++ P D+ K
Sbjct: 464 TNIIDEDGLLNLIRTMPGKKSKYEIAVEAEMK---KEKSKLE------RTPQKKDQGKRK 514
Query: 134 ISSSGVEERVKKLDVRAHSNSL---TSEPIDVLLQKVE-QEAFNKALNSSSEGQSDRSLP 189
IS + E K+ + +S + VL + + +E + N S ++
Sbjct: 515 ISPTKKESESKRSRLTPKKDSSIKSVKKETSVLWRCLNFEEQVAEETNDDSRARNLAGDS 574
Query: 190 EKPVVHEQLWVDKYAPNSFTELLS---DEQTNREVLLWLKQW 228
+ V LWVDKY P S ++ D+ ++L WL+ W
Sbjct: 575 SENKVENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLQNW 616
Score = 41 (19.5 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 17/74 (22%), Positives = 30/74 (40%)
Query: 139 VEERVKKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSSE-GQSDRSLPEKPVVHEQ 197
V + K+ A + L E I LQ E + L+ E ++ L E+P ++
Sbjct: 182 VASKRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKT-KK 240
Query: 198 LWVDKYAPNSFTEL 211
W D +F+ +
Sbjct: 241 AWKDPEERETFSSV 254
>ASPGD|ASPL0000007447 [details] [associations]
symbol:uvsF species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005663 "DNA replication
factor C complex" evidence=ISA] [GO:0006260 "DNA replication"
evidence=ISA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 GO:GO:0006260 EMBL:AACD01000107 EMBL:BN001301
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 HOGENOM:HOG000164552
OrthoDB:EOG4WDHM8 RefSeq:XP_663907.1 ProteinModelPortal:Q5AZH7
STRING:Q5AZH7 EnsemblFungi:CADANIAT00006686 GeneID:2871090
KEGG:ani:AN6303.2 OMA:PKMKPFD Uniprot:Q5AZH7
Length = 1092
Score = 156 (60.0 bits), Expect = 2.0e-10, Sum P(4) = 2.0e-10
Identities = 46/120 (38%), Positives = 66/120 (55%)
Query: 298 SWHKKTRS--TGPPEQ-----KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS 350
+W K ++ T P + + +++ GPPG+GKTT AH+ AK GY VVE NASD RS
Sbjct: 499 NWRKSAKANFTKPGKDGSGLYRSVMIHGPPGIGKTTAAHLVAKLEGYDVVESNASDTRSK 558
Query: 351 STIENKILDVVQMNSVMA---------DSRPKCLVI--DEIDG-ALGD--GKGAVEVILK 396
+E+ +L V+ S+ +S K LV+ DE+DG + GD G GA+ I K
Sbjct: 559 KLVESGLLGVLDTTSLQGYFSTSNKKVESGKKNLVLIMDEVDGMSAGDRGGVGAMAAIAK 618
Score = 117 (46.2 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 45/161 (27%), Positives = 71/161 (44%)
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGALGDG--KGAVEVILKMVSAERKSNTA-KENVAKED 415
DVV+ N+ +D+R K LV + G L +G K V + +K+ + V
Sbjct: 546 DVVESNA--SDTRSKKLVESGLLGVLDTTSLQGYFSTSNKKVESGKKNLVLIMDEVDGMS 603
Query: 416 QPEXXXXXXXXXXASLLR-PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHI 474
+ A + P+I ICN+ P ++ + F +P+V +V +RL I
Sbjct: 604 AGDRGGVGAMAAIAKKTQIPLILICNERRLPKMKPFDHVTFEIPFRRPTVEQVRARLLTI 663
Query: 475 CNNESMKTSSIALTTLAEYTECDIRSCLNTLQF--LDKKKE 513
C E MK L +L E T DIR +N L LD+ ++
Sbjct: 664 CFREKMKIPPQVLDSLIEGTHADIRQVINMLSAVRLDRSEQ 704
Score = 76 (31.8 bits), Expect = 2.0e-10, Sum P(4) = 2.0e-10
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 182 GQSDRSLPEKPV--VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQW 228
GQ+ + + +K +QLW KYAP S + ++ ++ WL+ W
Sbjct: 452 GQTTQDVKDKKENNADDQLWTSKYAPTSLNMICGNKGAVEKLQAWLRNW 500
Score = 56 (24.8 bits), Expect = 2.0e-10, Sum P(4) = 2.0e-10
Identities = 29/110 (26%), Positives = 47/110 (42%)
Query: 54 RSDTPKSPIDVDEPQFDEKRSRIVDNDDEDWLRYSPPPPQARDDARVEVEEKFVSRYASE 113
RS PK+ + + Q D K + + + SPPPPQ D+ + V SR
Sbjct: 257 RSKKPKA-LTAKQDQSDSKEIQDIFDSIPTIKAPSPPPPQGSDEKKKFVFGGGKSR--DP 313
Query: 114 IDGDC-LPVTAPS---GGDRVYVKISSSGVEERVKKLDVRAHSNSLTSEP 159
+ G LPV A + G V+ + + E + L V+ + +T+ P
Sbjct: 314 VSGGAELPVGAENCLAGLTFVFTGVLDTLGREEGQAL-VKRYGGKVTTAP 362
Score = 49 (22.3 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 71 EKRSRIVDNDDEDWLRYSPP--PPQARDDARVEVEEKFVSRYASEIDGDCLPVTAPSGG 127
+KRS + + DDED + P P A A + + K S A + D D + T+ S G
Sbjct: 197 KKRSALGE-DDEDVIMEDAPRRPASAAKPATSQTQRKRKSE-AVDKDDDDIQATSKSVG 253
Score = 40 (19.1 bits), Expect = 2.0e-10, Sum P(4) = 2.0e-10
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 817 MDLAGEEDSKTESAKTNNAAVSAKLIEKSKSLPYSRQCN 855
+ L ++SK + AA + ++S LPY + N
Sbjct: 953 LGLGPMDESKVKLETQTKAAFTRVYNQRSHPLPYMKASN 991
Score = 38 (18.4 bits), Expect = 1.2e-08, Sum P(4) = 1.2e-08
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 55 SDTPKSPIDVDEPQFD--EKRSRIVDNDDED 83
+ +P P E Q KR R V ND ED
Sbjct: 18 ASSPTKPPAKKEKQTPARNKRGRKVVNDSED 48
>TAIR|locus:2204705 [details] [associations]
symbol:AT1G77620 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR004582 SMART:SM00382 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0006281
GO:GO:0007049 GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470
PANTHER:PTHR12172 UniGene:At.17804 IPI:IPI00527278 PIR:G96805
RefSeq:NP_177885.1 UniGene:At.50043 ProteinModelPortal:Q9CAP6
SMR:Q9CAP6 PaxDb:Q9CAP6 PRIDE:Q9CAP6 EnsemblPlants:AT1G77620.1
GeneID:844097 KEGG:ath:AT1G77620 TAIR:At1g77620
HOGENOM:HOG000152243 InParanoid:Q9CAP6 OMA:QLMDECS PhylomeDB:Q9CAP6
ProtClustDB:CLSN2912865 Genevestigator:Q9CAP6 Uniprot:Q9CAP6
Length = 1151
Score = 152 (58.6 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 54/224 (24%), Positives = 96/224 (42%)
Query: 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMAD 369
++ VLL+ GP G GK+ H AK G+ ++E N S+ RS + + K + ++ S+
Sbjct: 384 QKNVLLIVGPAGSGKSAAIHACAKEQGFKILESNTSECRSGTVVRQKFGEALKSYSL--- 440
Query: 370 SRPKCLVIDEIDGALGDGKGAVEVI--LKMVSAERKSNTAKENVAKED------QPEXXX 421
SR +D + + DG G +V+ + ++ + K + ED +
Sbjct: 441 SRS----LDPLFNSCTDGNGVEDVVEVMPVLHIQNDGANLKPLILFEDVDICFAEDRGLV 496
Query: 422 XXXXXXXASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMK 481
PV+ ND +L +I +++ F PS + + L +C E +K
Sbjct: 497 SAIQQIAVKAKGPVVLTANDKNHGLPDNLERI-EIY-FSLPSKEELFNHLSLVCAAEEVK 554
Query: 482 TSSIALTTLAEYTECDIRSCLNTLQFL--DKKKEILNVMDIGSQ 523
+ +L + + DIR + LQF K K V + G+Q
Sbjct: 555 VNHGSLEEMTTFCGGDIRKAIMQLQFWFQSKPKRARKVKNTGNQ 598
Score = 80 (33.2 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQW 228
+LWVDKY P S +E+ + ++ + + WL+QW
Sbjct: 311 RLWVDKYQPRSASEVCGNTESVKVMNEWLRQW 342
Score = 46 (21.3 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 59 KSPIDVDEPQFDEKRSRIVDNDDEDWLRYSPPPPQARDDARVEVEE 104
KSP + K + D SPP P R +A++ EE
Sbjct: 71 KSPRKTTPKKCATKNGIVAAGDQMIAANVSPPVPNLRLEAKLRAEE 116
>UNIPROTKB|E2RCC4 [details] [associations]
symbol:ATAD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 OMA:LDVYNAV
GeneTree:ENSGT00670000098003 EMBL:AAEX03006644 EMBL:AAEX03006645
Ensembl:ENSCAFT00000029357 Uniprot:E2RCC4
Length = 1883
Score = 106 (42.4 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 33/108 (30%), Positives = 51/108 (47%)
Query: 135 SSSGVEERVKKLDVRAHSN------SLTSEPIDVLLQ---KVEQEAFNKA----LNSSSE 181
S + E+ ++LD R +SN S TS L KVE EA ++ E
Sbjct: 1018 SPKKINEKPEELDKRNNSNRIKQGLSKTSRKKQTTLSIACKVETEAVEDPDVLIIDDGKE 1077
Query: 182 GQSDRS-LPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQW 228
S+RS +P+ + LW +KY P + EL+ +E +++ WLK W
Sbjct: 1078 SPSERSPIPDSGT-EDMLWTEKYQPQNSNELIGNELAIKKLHSWLKDW 1124
Score = 100 (40.3 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
+L+ GP G+GKT + A+ G+ + EVNAS RS I +++ + Q + V
Sbjct: 1169 VLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQV 1221
Score = 77 (32.2 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 26/80 (32%), Positives = 35/80 (43%)
Query: 429 ASLLRPVICICNDLYAPALRSLRQIAKVHV-FIQPSVSRVVSRLKHICNNESMKTSSIAL 487
A+ RPVI +D P + + F PS+ V S L+ IC E+ +T
Sbjct: 1366 ATTKRPVILTTSD---PTFSLMFDGCFEEINFSTPSLRNVASYLQMICLAENFRTDVKDF 1422
Query: 488 TTLAEYTECDIRSCLNTLQF 507
TL CDIR + LQF
Sbjct: 1423 VTLLTANTCDIRKSILYLQF 1442
Score = 44 (20.5 bits), Expect = 4.6e-09, Sum P(4) = 4.6e-09
Identities = 25/98 (25%), Positives = 45/98 (45%)
Query: 642 SQIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHIL 701
S+ +KP + K Q+ + ++ D+F + ++SR ++ S EDS +
Sbjct: 1591 SEGEKPLKKPQKKKQKKKMEILDDSDLFDTELDFSNEFLSRSPASSSNSEDSKARDKE-- 1648
Query: 702 SPPTLRPVALHLLSAKE-----KNDLAQLVSAMVSYSL 734
S P ++ + L S KE K + SA+VS+ L
Sbjct: 1649 SNPDVKKLNKCLESNKESIPCPKTPAEKKCSALVSHCL 1686
Score = 42 (19.8 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 461 QPSVSRVVSRLKHICNNESMK 481
Q S++ + L++IC E +K
Sbjct: 1830 QASITEYLPTLRNICRTEKLK 1850
Score = 38 (18.4 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 920 DSLPLLFKFNEGFTNAVK 937
+ + ++F+ + GF NA+K
Sbjct: 1345 EEVDVIFEEDAGFLNAIK 1362
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 123 (48.4 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 34/101 (33%), Positives = 52/101 (51%)
Query: 314 LLLCGPPGLGKTTLAH-VAAKHCG---YH--VVEVNASDDRSSSTIENKILDVVQMNSVM 367
+++ G PG+GKTT H +A + G YH +E+NASDDR + NKI Q +
Sbjct: 45 MIISGLPGIGKTTSIHCLAYELLGDEHYHQATMELNASDDRGIDVVRNKIKQFAQTKISL 104
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAK 408
R K +++DE D GA + + + + E SNT +
Sbjct: 105 PPGRQKIIILDEADSMT---PGAQQALRRTI--EIYSNTTR 140
Score = 65 (27.9 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 191 KPVVHEQLWVDKYAPNSFTELLSDEQT 217
KPV E WV+KY P +++ +E+T
Sbjct: 3 KPVTLELPWVEKYRPKKLEDIVGNEET 29
Score = 55 (24.4 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
S V++RL I E +K ++ L L E D+R +N LQ
Sbjct: 168 SDEEVLARLLEIIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQ 211
>UNIPROTKB|E1BCE1 [details] [associations]
symbol:ATAD5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 CTD:79915 OMA:LDVYNAV
GeneTree:ENSGT00670000098003 EMBL:DAAA02048524 IPI:IPI00702968
RefSeq:NP_001193418.1 UniGene:Bt.53428 PRIDE:E1BCE1
Ensembl:ENSBTAT00000024464 GeneID:513059 KEGG:bta:513059
NextBio:20870685 Uniprot:E1BCE1
Length = 1847
Score = 100 (40.3 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
+L+ GP G+GKT + A+ G+ + EVNAS RS I +++ + Q + V
Sbjct: 1128 VLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQV 1180
Score = 88 (36.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 140 EERVKKLDVRAHSNSLTSEPIDVLL--QKV--EQEAFNKALNSSSEGQSDRSLPEKPVVH 195
E + K+++ H S +P + L +K+ + E +K N+SS + D S + +
Sbjct: 995 ETKRKRVETENHK-SKRRKPNEYLESPRKINGKPEELDKR-NNSSGIKLDSS--KDSGIE 1050
Query: 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQW 228
+ LW +KY P + +EL+ +E +++ WLK W
Sbjct: 1051 DMLWTEKYQPQNSSELIGNELAIKKLHSWLKDW 1083
Score = 77 (32.2 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 26/80 (32%), Positives = 35/80 (43%)
Query: 429 ASLLRPVICICNDLYAPALRSLRQIAKVHV-FIQPSVSRVVSRLKHICNNESMKTSSIAL 487
A+ RPVI +D P + + F PS+ V S L+ IC E+ +T
Sbjct: 1326 ATTKRPVILTTSD---PTFSLMFDGCFEEINFNTPSLLNVASYLQMICLTENFRTDVKDF 1382
Query: 488 TTLAEYTECDIRSCLNTLQF 507
TL CDIR + LQF
Sbjct: 1383 VTLLTANTCDIRKSILYLQF 1402
Score = 53 (23.7 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 18/85 (21%), Positives = 41/85 (48%)
Query: 188 LPEKPVVHEQLWVDKY--APNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVL 245
L ++ + + +D Y +SF ++ +Q + LW + +C ++++ + +V+
Sbjct: 843 LLKRQIAKKAAVLDVYNAVSSSFQRVVHVQQKDHGCHLWHLKPPTCPLLTKLKELNTKVI 902
Query: 246 S------ALRRHSTISQNKKQNDSS 264
AL ST++ N K N+S+
Sbjct: 903 DLSKCVMALGEFSTLNSNSKSNNST 927
Score = 42 (19.8 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 461 QPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
Q S+ + L++IC E +K + Y E
Sbjct: 1794 QASIIEYLPTLRNICRTEKLKEQGKSKRRFLHYLE 1828
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 123 (48.4 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 37/96 (38%), Positives = 50/96 (52%)
Query: 314 LLLCGPPGLGKT-TLAHVAAKHCG--YH--VVEVNASDDRSSSTIENKILDVVQMNSV-M 367
LLL GPPG GKT T+ VA K G Y ++E+NASDDR + +I D S +
Sbjct: 75 LLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSL 134
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVE-VILKMVSAER 402
S K +++DE D D + A+ VI K + R
Sbjct: 135 GKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTR 170
Score = 64 (27.6 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 470 RLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
RLKH+ E + S L L + D+R LN LQ
Sbjct: 205 RLKHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQ 241
Score = 44 (20.5 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 199 WVDKYAPNSFTELLSDEQTNREVL 222
WV+KY P S L D +R+++
Sbjct: 41 WVEKYRPQS----LDDVAAHRDII 60
Score = 42 (19.8 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 60 SPIDVDEPQFDEKRSRIVDNDDEDWLRYSPPPPQARDDARVE 101
S +D+D DE + R N +D + + PPP Q++ VE
Sbjct: 6 SAMDID---VDEIQPRKPINKGKDVVGFGPPP-QSKATPWVE 43
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 114 (45.2 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 314 LLLCGPPGLGKTT----LAHVAAKHCGYH--VVEVNASDDRSSSTIENKILDVVQMNSVM 367
L++ G PG+GKTT LAH A Y V+E+NASD+R + N+I Q ++
Sbjct: 57 LVISGMPGIGKTTSILCLAH-ALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVIL 115
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVS 399
R K +++DE D + A+ +++ S
Sbjct: 116 PPGRHKIIILDEADSMTAGAQQALRRTMEIYS 147
Score = 60 (26.2 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
+V+ RL +IC E + + L L E D+R +N LQ
Sbjct: 182 QVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQ 222
Score = 59 (25.8 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 173 NKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQT 217
+ A++SS G+ + S V +E WV+KY P +++ +E+T
Sbjct: 2 SNAVSSSVFGEKNNS-----VAYELPWVEKYRPIVLDDIVGNEET 41
Score = 37 (18.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 447 LRSLRQIAKVHVFIQPSVSRVVSRLKHICN--NESMKTSSIAL 487
L L++I + H+ I V ++ +C MK S +
Sbjct: 300 LEMLKEIGQTHMIILEGVQTLLQLSGLVCRLAKSQMKPESFII 342
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 104 (41.7 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC-GY----HVVEVNASDDRSSSTIENKILDVVQMN--SV 366
+LL GPPG GKT+ A++ G ++E+NASD+R + + KI + Q++ SV
Sbjct: 66 MLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSV 125
Query: 367 MADSRP----KCLVIDEID 381
D +P K +++DE D
Sbjct: 126 RPDGKPCPPFKIIILDEAD 144
Score = 77 (32.2 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKK---EILNVMDI 520
+V+ RLK+IC E +K A ++ + + D+R + TLQ + K I+N D+
Sbjct: 197 KVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADL 254
Score = 53 (23.7 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 170 EAFNKALNSSSEGQSDRSLPEKPVVHEQL---WVDKYAPNSFTELLSDEQTNREVLLWLK 226
+AF K S+ G D+S P + WV+KY P + +++ EQ+ EV+ L+
Sbjct: 2 QAFLKT-GKSTAGSGDKS-QGTPAARRKPPAPWVEKYRPRNVDDVV--EQS--EVVAVLR 55
Query: 227 QWDSCVFGSEI 237
+ CV G ++
Sbjct: 56 K---CVEGGDL 63
>ZFIN|ZDB-GENE-070912-20 [details] [associations]
symbol:atad5a "ATPase family, AAA domain containing
5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-070912-20 GO:GO:0005524 GO:GO:0017111
GeneTree:ENSGT00670000098003 EMBL:FP016144 IPI:IPI00773299
Ensembl:ENSDART00000103733 Ensembl:ENSDART00000103737
Uniprot:E7FE92
Length = 1778
Score = 113 (44.8 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 71/297 (23%), Positives = 119/297 (40%)
Query: 85 LRYSPPP-PQARDDAR-VEVEEKFVSRY-ASEIDGDCLPVTAPSGGDRVYVKISSSGVEE 141
+R S P P R R ++ E ++ + A++++ + D V K E
Sbjct: 846 MRISNPSFPHQRFFTRFIKRREDYILQASAADLEDESKESCHAGSSDAVGRKRKRVDEGE 905
Query: 142 RVKKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQLWVD 201
K+ + S S T + DV++ +V + +A S G+ RSL +K E D
Sbjct: 906 ATGKIGKKTKS-SHTDD--DVIVIEVSPPSRGEAAQPSGRGRRGRSLRQKQK-EESKPED 961
Query: 202 KYAP-NSFTELL--------SDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHS 252
+ +P N ++ S E +E +LW +++ SEI E V R HS
Sbjct: 962 QTSPVNDDVMIVEPAVSRNTSTEDGIKEDVLWTEKYQP-QHSSEIIGNMESVR---RLHS 1017
Query: 253 TISQNKKQNDSSFTRKNRGNRWSNGNFRXXXXXXXXXXXXKGIQDSWHKKTRSTGPPEQ- 311
+ + K + D RK + + + DSW + E
Sbjct: 1018 WLKEWKLRADREERRKQQEKKHEEDS-----------------NDSW-LMSEDLDETEDF 1059
Query: 312 --KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
LL+ GP G+GKT + A+ G+ V EVN+S RS I +++ + Q + V
Sbjct: 1060 LCNTLLITGPTGVGKTAAVYACAQELGFKVFEVNSSSQRSGRQILSQLKEATQSHQV 1116
Score = 103 (41.3 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 433 RPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492
RPVI +D A+ Q ++H F PSV+ V S ++ +C E+++T S ++ L E
Sbjct: 1275 RPVILTTSDSTFGAMFD-GQFEEIH-FKSPSVADVSSYVRLLCLAENLRTDSKDVSCLLE 1332
Query: 493 YTECDIRSCLNTLQF 507
+ CDIR L LQF
Sbjct: 1333 WNGCDIRQSLLQLQF 1347
Score = 41 (19.5 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 505 LQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWK 539
L+ LD+ + + + + +++ GRK MS + D+++
Sbjct: 1484 LESLDEPSDDGSPLKVSARMKGRKKMSINHKDVFQ 1518
>FB|FBgn0004913 [details] [associations]
symbol:Gnf1 "Germ line transcription factor 1" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006260 "DNA replication" evidence=IEA;NAS] [GO:0005663 "DNA
replication factor C complex" evidence=IEA;NAS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0022008
GO:GO:0006355 GO:GO:0003677 GO:GO:0006260 GO:GO:0006351
GO:GO:0046331 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:L17340 EMBL:U97685 EMBL:AY122077
EMBL:BT003618 RefSeq:NP_001014605.1 RefSeq:NP_524229.1
UniGene:Dm.2491 ProteinModelPortal:P35600 SMR:P35600 DIP:DIP-18735N
IntAct:P35600 MINT:MINT-961959 STRING:P35600 PaxDb:P35600
EnsemblMetazoa:FBtr0078837 GeneID:40607 KEGG:dme:Dmel_CG1119
CTD:100035172 FlyBase:FBgn0004913 eggNOG:COG5275 InParanoid:P35600
OrthoDB:EOG4S1RP9 GenomeRNAi:40607 NextBio:819627 GermOnline:CG1119
Uniprot:P35600
Length = 986
Score = 149 (57.5 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 33/96 (34%), Positives = 55/96 (57%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV----- 366
K LL GPPG+GKTT A + K G+ VE NASD RS +++++ ++ S+
Sbjct: 481 KAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFT 540
Query: 367 ---MADSRPKCLVIDEIDGALG-DGKGAVEVILKMV 398
A SR L++DE+DG G + +G ++ ++ ++
Sbjct: 541 GQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALI 576
Score = 138 (53.6 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 46/196 (23%), Positives = 85/196 (43%)
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV----AKE 414
D V+ N+ +D+R K L+ DE+ L + + + + RK + V E
Sbjct: 507 DAVEFNA--SDTRSKRLLKDEVSTLLSNKSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNE 564
Query: 415 DQPEXXXXXXXXXXASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHI 474
D+ +S+ P+IC+CND P +RSL F +P + ++ ++ I
Sbjct: 565 DRGGMQELIALIKDSSI--PIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSI 622
Query: 475 CNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSA 534
C E +K S + + T DIR +N + L K++ Q V KD+
Sbjct: 623 CFKEKVKISPAKVEEIIAATNNDIRQSINHIALLSAKED---ASQKSGQQVATKDLKLGP 679
Query: 535 FDIWKEIFQKRKTKRL 550
+++ +++F + K +
Sbjct: 680 WEVVRKVFTADEHKHM 695
Score = 58 (25.5 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 166 KVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDE--QTNREVLL 223
KV++E ++ + S +D L VV WVDK+ P S E++ +N L+
Sbjct: 393 KVKKEPSSQKEHPPSPRTAD--LKTLDVVG-MAWVDKHKPTSIKEIVGQAGAASNVTKLM 449
Query: 224 -WLKQW 228
WL +W
Sbjct: 450 NWLSKW 455
Score = 39 (18.8 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 92 PQARDDARVEVEEKFVSRYASEIDGD-CLPVTAPSGGDRVYVKISSSGVEERVK 144
P+ + A +E E + + R E+D D + AP +V+ SS +R K
Sbjct: 110 PKPKTKAVLEFENEDIDRSLMEVDLDESIKEAAPE--KKVHSITRSSPSPKRAK 161
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 110 (43.8 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKTT + +A G V+E+NAS+DR + NKI Q +
Sbjct: 67 IIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 126
Query: 369 DSRPKCLVIDEIDGALGDG 387
R K +++DE D ++ DG
Sbjct: 127 KGRHKIIILDEAD-SMTDG 144
Score = 71 (30.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 178 SSSEGQSDRSLPEKPVVHEQL-WVDKYAPNSFTELLSDEQT 217
S S Q +P K H +L WV+KY P E++ +E T
Sbjct: 11 SESGAQEPSPVPSKTAGHYELPWVEKYRPLKLNEIVGNEDT 51
Score = 49 (22.3 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 465 SRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
++V++RL ++ E + + L + + D+R LN LQ
Sbjct: 191 AQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 232
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 110 (43.8 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKTT + +A G V+E+NAS+DR + NKI Q +
Sbjct: 67 IIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 126
Query: 369 DSRPKCLVIDEIDGALGDG 387
R K +++DE D ++ DG
Sbjct: 127 KGRHKIIILDEAD-SMTDG 144
Score = 68 (29.0 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 178 SSSEGQSDRS-LPEKPVVHEQL-WVDKYAPNSFTELLSDEQT 217
S+ G + S +P K H +L WV+KY P E++ +E T
Sbjct: 10 SAESGTQEPSPVPSKTTGHYELPWVEKYRPVKLNEIVGNEDT 51
Score = 52 (23.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 465 SRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
++V+SRL ++ E + + L + + D+R LN LQ
Sbjct: 191 AQVLSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQ 232
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 112 (44.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LLL GPPG GKT+ AK G V+E+NASDDR + IL ++
Sbjct: 55 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF 114
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D D + A+ +++
Sbjct: 115 KKGF-KLVILDEADAMTQDAQNALRRVIE 142
Score = 61 (26.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F + +V RL+H+ E + S + L +
Sbjct: 153 ICNYLSKIIPALQS--RCTRFR-FGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSS 209
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 210 GDMRRALNILQ 220
Score = 54 (24.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 189 PEKPVVHEQLWVDKYAPNSFTELLSDE 215
PE + WV+KY P + +L+S +
Sbjct: 11 PEAAKIRNLPWVEKYRPQTLDDLISHQ 37
>ZFIN|ZDB-GENE-030131-338 [details] [associations]
symbol:atad5b "ATPase family, AAA domain containing
5b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
ZFIN:ZDB-GENE-030131-338 GO:GO:0005524 GO:GO:0017111 EMBL:BC057535
IPI:IPI00508172 RefSeq:NP_001076298.2 UniGene:Dr.1990
ProteinModelPortal:Q6PFI7 GeneID:321619 KEGG:dre:321619 CTD:321619
HOVERGEN:HBG100651 InParanoid:Q6PFI7 NextBio:20807450
ArrayExpress:Q6PFI7 Uniprot:Q6PFI7
Length = 1060
Score = 87 (35.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEE 243
V + LW DKY P +E++ + + R++ WLK+W + E R +E
Sbjct: 362 VDDVLWTDKYQPQQSSEVIGNSASVRQLHSWLKEWKTRADTEERRRRQDE 411
Score = 87 (35.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADS-RP 372
+L+ GP G+GKT + A+ G+ V EVN+S R + +++ + Q + + +S +P
Sbjct: 444 VLITGPSGVGKTAAVYACAQELGFKVFEVNSSALRCGRLLLSQLTEATQSHQMDLESIKP 503
Query: 373 KCLVIDEIDGALGDGK-GAVEVILKMVSAERKSNTA--KE-NVAKED 415
++ G + + V A RK T+ KE +V + D
Sbjct: 504 SA--VESESGVINQSQIKPAPVSSTGKEAHRKVTTSPSKETSVCRSD 548
Score = 75 (31.5 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 433 RPVICICND-LYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491
RP+I ND L+ L+ ++H F PS+ + S L+ +C E+MKT + L
Sbjct: 649 RPIILTTNDPLFGARLKG--HFDEIH-FRTPSLQTIRSYLQCLCAVENMKTDPEYMAFLL 705
Query: 492 EYTECDIRSCLNTLQ 506
+ DIR + LQ
Sbjct: 706 CQNKGDIRQSILQLQ 720
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 112 (44.5 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LLL GPPG GKT+ AK G V+E+NASDDR + IL ++
Sbjct: 70 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF 129
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D D + A+ +++
Sbjct: 130 KKGF-KLVILDEADAMTQDAQNALRRVIE 157
Score = 61 (26.5 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F + +V RL+H+ E + S + L +
Sbjct: 168 ICNYLSKIIPALQS--RCTRFR-FGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSS 224
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 225 GDMRRALNILQ 235
Score = 55 (24.4 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 176 LNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDE 215
+ +S+ Q + PE + WV+KY P + +L+S +
Sbjct: 15 MQTSAHKQQQQ--PEATKIRNLPWVEKYRPQTLDDLISHQ 52
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 112 (44.5 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LLL GPPG GKT+ AK G V+E+NASDDR + IL ++
Sbjct: 55 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF 114
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D D + A+ +++
Sbjct: 115 KKGF-KLVILDEADAMTQDAQNALRRVIE 142
Score = 62 (26.9 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F + +V RL+H+ E + S + L +
Sbjct: 153 ICNYLSKIIPALQS--RCTRFR-FGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSS 209
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 210 GDMRRALNILQ 220
Score = 49 (22.3 bits), Expect = 3.8e-06, Sum P(3) = 3.8e-06
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 199 WVDKYAPNSFTELLSDE 215
WV+KY P + +L+S +
Sbjct: 21 WVEKYRPQTLNDLISHQ 37
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 113 (44.8 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LLL GPPG GKT+ AK G V+E+NASDDR I IL ++
Sbjct: 56 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIF 115
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D D + A+ +++
Sbjct: 116 KKGF-KLVILDEADAMTQDAQNALRRVIE 143
Score = 62 (26.9 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F + +V RL+H+ E + S + L +
Sbjct: 154 ICNYLSKIIPALQS--RCTRFR-FGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSS 210
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 211 GDMRRALNILQ 221
Score = 49 (22.3 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 199 WVDKYAPNSFTELLSDE 215
WV+KY P + +L+S +
Sbjct: 22 WVEKYRPQTLNDLISHQ 38
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 112 (44.5 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LLL GPPG GKT+ AK G V+E+NASDDR + IL ++
Sbjct: 55 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF 114
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D D + A+ +++
Sbjct: 115 KKGF-KLVILDEADAMTQDAQNALRRVIE 142
Score = 63 (27.2 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F + +V RL+H+ E++ S + L +
Sbjct: 153 ICNYLSKIIPALQS--RCTRFR-FGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSS 209
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 210 GDMRRALNILQ 220
Score = 49 (22.3 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 199 WVDKYAPNSFTELLSDE 215
WV+KY P + +L+S +
Sbjct: 21 WVEKYRPQTLADLISHQ 37
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 112 (44.5 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LLL GPPG GKT+ AK G V+E+NASDDR + IL ++
Sbjct: 55 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF 114
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D D + A+ +++
Sbjct: 115 KKGF-KLVILDEADAMTQDAQNALRRVIE 142
Score = 62 (26.9 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F + +V RL+H+ E + S + L +
Sbjct: 153 ICNYLSKIIPALQS--RCTRFR-FGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSS 209
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 210 GDMRRALNILQ 220
Score = 49 (22.3 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 199 WVDKYAPNSFTELLSDE 215
WV+KY P + +L+S +
Sbjct: 21 WVEKYRPQTLNDLISHQ 37
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 111 (44.1 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LLL GPPG GKT+ AK G V+E+NASDDR + IL ++
Sbjct: 55 LLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIF 114
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D D + A+ +++
Sbjct: 115 KRGF-KLVILDEADAMTQDAQNALRRVIE 142
Score = 63 (27.2 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F + +V RL+H+ E++ S + L +
Sbjct: 153 ICNYLSKIIPALQS--RCTRFR-FGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSS 209
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 210 GDMRRALNILQ 220
Score = 49 (22.3 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 199 WVDKYAPNSFTELLSDE 215
WV+KY P + +L+S +
Sbjct: 21 WVEKYRPQTLADLISHQ 37
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 108 (43.1 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
LLL G PG GKTT + +A++ G V+E+NASDDR + I ++I + +
Sbjct: 52 LLLAGAPGTGKTTSILCLASEMLGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLP 111
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVS 399
+ K +++DE+D + ++ I+++ S
Sbjct: 112 PGKHKIIILDEVDSMTTAAQQSLRRIMELYS 142
Score = 74 (31.1 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 432 LRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491
LR + YA L + + +H+ PS R+ + LKH N+E K IA + +
Sbjct: 209 LRKAVNCLQSTYA-GLEVINKENVLHICDIPSPERIENLLKHCVNSEWKKAHDIAYSMIK 267
Query: 492 E-YTECDIR-SCLNTLQFLDKKKEILNV--MDIGS 522
E +T DI + N L+ + E++ + + IG+
Sbjct: 268 EGHTPYDISLTSSNVLRRFNIGSEVIQIEFLKIGA 302
Score = 67 (28.6 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 459 FIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQF----LD--KKK 512
+ + S +V+ R+ IC+ E++K + L L + D+R +N LQ L+ K+
Sbjct: 170 YFKLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYAGLEVINKE 229
Query: 513 EILNVMDIGS 522
+L++ DI S
Sbjct: 230 NVLHICDIPS 239
Score = 41 (19.5 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 198 LWVDKYAPNSFTELLSD 214
+W++KY P E++ +
Sbjct: 17 IWIEKYRPEFLDEVVGN 33
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 108 (43.1 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
LLL G PG GKTT + +A++ G V+E+NASDDR + I ++I + +
Sbjct: 52 LLLAGAPGTGKTTSILCLASEMLGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLP 111
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVS 399
+ K +++DE+D + ++ I+++ S
Sbjct: 112 PGKHKIIILDEVDSMTTAAQQSLRRIMELYS 142
Score = 74 (31.1 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 432 LRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491
LR + YA L + + +H+ PS R+ + LKH N+E K IA + +
Sbjct: 209 LRKAVNCLQSTYA-GLEVINKENVLHICDIPSPERIENLLKHCVNSEWKKAHDIAYSMIK 267
Query: 492 E-YTECDIR-SCLNTLQFLDKKKEILNV--MDIGS 522
E +T DI + N L+ + E++ + + IG+
Sbjct: 268 EGHTPYDISLTSSNVLRRFNIGSEVIQIEFLKIGA 302
Score = 67 (28.6 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 459 FIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQF----LD--KKK 512
+ + S +V+ R+ IC+ E++K + L L + D+R +N LQ L+ K+
Sbjct: 170 YFKLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLRKAVNCLQSTYAGLEVINKE 229
Query: 513 EILNVMDIGS 522
+L++ DI S
Sbjct: 230 NVLHICDIPS 239
Score = 41 (19.5 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 198 LWVDKYAPNSFTELLSD 214
+W++KY P E++ +
Sbjct: 17 IWIEKYRPEFLDEVVGN 33
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 110 (43.8 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKTT + +A G V+E+NAS+DR + NKI Q +
Sbjct: 77 IIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 136
Query: 369 DSRPKCLVIDEIDGALGDG 387
R K +++DE D ++ DG
Sbjct: 137 KGRHKIIILDEAD-SMTDG 154
Score = 65 (27.9 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 163 LLQKVEQEAFNKALNSSSEGQSDRSLPEKPVV--HEQL-WVDKYAPNSFTELLSDEQTNR 219
+L+ VE E A + G +D +L P H +L WV+KY P E++ +E T
Sbjct: 6 VLEVVEDEKAGPAA-AEKRGPTD-TLGSAPAASGHYELPWVEKYRPLKLCEVVGNEDTVS 63
Query: 220 EVLLWLKQ 227
+ ++ K+
Sbjct: 64 RLEVFAKE 71
Score = 49 (22.3 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 465 SRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
S++++RL I E + + L + + D+R LN LQ
Sbjct: 201 SQILARLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQ 242
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 114 (45.2 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHCGYH-------VVEVNASDDRSSSTIENKILDVVQMNSV 366
LL GPPG GKT+ A+ Y V+E+NASDDR + +IL+ ++
Sbjct: 47 LLFYGPPGTGKTSTILACARQL-YSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTI 105
Query: 367 MADSRPKCLVIDEIDGALGDGKGAVEVILK 396
D+ K +++DE D D + A+ I++
Sbjct: 106 FCDTF-KLIILDEADAMTNDAQNALRRIIE 134
Score = 54 (24.1 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F S +++ RL+ I E+++ + L +
Sbjct: 145 ICNYLSKIIPALQS--RCTRFR-FAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLAK 201
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 202 GDMRKVLNVLQ 212
Score = 53 (23.7 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 199 WVDKYAPNSFTELLSDEQ 216
WV+KY P+ +L+S E+
Sbjct: 13 WVEKYRPSGLDDLISHEE 30
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 106 (42.4 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 31/97 (31%), Positives = 47/97 (48%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LL GPPG GKTT AA+ V+E+NASD+R + N I++ Q +
Sbjct: 65 LLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQ 124
Query: 368 ADSR-------P-KCLVIDEIDGALGDGKGAVEVILK 396
A S P K +++DE D D + A+ +++
Sbjct: 125 AFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIE 161
Score = 62 (26.9 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 438 ICNDLYA--PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L + PA++S + + F +V RL++I E +K + L ++
Sbjct: 172 ICNYLASIVPAIQS--RCTRFR-FAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSK 228
Query: 496 CDIRSCLNTLQ 506
D+R+ +NTLQ
Sbjct: 229 GDMRTVINTLQ 239
Score = 55 (24.4 bits), Expect = 9.3e-06, Sum P(3) = 9.3e-06
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 199 WVDKYAPNSFTELLSDEQ 216
WV+KY P+ EL++ EQ
Sbjct: 31 WVEKYRPSKLDELVAHEQ 48
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 114 (45.2 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 30/109 (27%), Positives = 51/109 (46%)
Query: 314 LLLCGPPGLGKTTLAHVAAKH---CGYH--VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKT+ A+ Y V E+NASDDR+ + +KI +
Sbjct: 56 IIISGPPGTGKTSSILCLARALLGANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLP 115
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
R K +++DE+D + A+ I+++ S + A K +P
Sbjct: 116 AGRHKIIILDEVDSMTSGAQQALRRIMEIYSGTTRFAFACNQSTKIIEP 164
Score = 59 (25.8 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 459 FIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVM 518
F + S S++++RL+ + E + + L + E D+R LN LQ ++N
Sbjct: 174 FTRLSDSQILTRLREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAE 233
Query: 519 DI 520
++
Sbjct: 234 NV 235
Score = 47 (21.6 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 199 WVDKYAPNSFTELLSDEQT 217
WV+KY P +++ +E+T
Sbjct: 22 WVEKYRPILIKDIVGNEET 40
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 99 (39.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 33/96 (34%), Positives = 45/96 (46%)
Query: 314 LLLCGPPGLGKT-TLAHVAAKHCG--YH--VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
LL GPPG GKT T+ +A K G Y V+E+NASDDR + +I
Sbjct: 60 LLFYGPPGTGKTSTIQAIARKLYGDNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFN 119
Query: 369 DSRP-KCLVIDEIDGALGDGKGAVE-VILKMVSAER 402
+ P K +++DE D + A+ VI K R
Sbjct: 120 TTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTR 155
Score = 72 (30.4 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 437 CI-CNDLYA--PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493
CI CN + PAL+S + + P+ + RLK I E++K S A+ + E
Sbjct: 157 CIVCNYVIKIIPALQS--RCTRFRFSPLPTPPTEI-RLKEIIEKENVKVDSKAMNAVLEL 213
Query: 494 TECDIRSCLNTLQ 506
D+R CLN LQ
Sbjct: 214 GCGDMRKCLNILQ 226
Score = 50 (22.7 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 199 WVDKYAPNSFTELLSDEQTNREV 221
WV+KY P + +L++ E + +
Sbjct: 26 WVEKYRPKNLDDLIAHEDITQTI 48
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 131 (51.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 36/109 (33%), Positives = 53/109 (48%)
Query: 314 LLLCGPPGLGKTT----LAH-VAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA 368
L+L GPPG GKTT LAH + + V+E+NASDDR + NKI Q +
Sbjct: 51 LILSGPPGTGKTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLP 110
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
R K +++DE D + A+ +++ S + A AK +P
Sbjct: 111 PGRHKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEP 159
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 195 HEQLWVDKYAPNSFTELLSDE 215
+ + WV+KY P+ +++ +E
Sbjct: 13 YNEPWVEKYRPSKVVDIVGNE 33
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 110 (43.8 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKTT + +A G V+E+NAS+DR + NKI Q +
Sbjct: 102 IIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 161
Query: 369 DSRPKCLVIDEIDGALGDG 387
R K +++DE D ++ DG
Sbjct: 162 KGRHKIIILDEAD-SMTDG 179
Score = 62 (26.9 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 169 QEAFNKALNSSSEGQSDRSLPEKPVV--HEQLWVDKYAPNSFTELLSDEQT 217
+E ++ + + D + P KP +E WV+KY P E++ +E+T
Sbjct: 37 KETDSEQTQADGPPKKDETAP-KPTTTAYELPWVEKYRPLKLNEIVGNEET 86
Score = 49 (22.3 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
+++ RL + E++ ++ L + + D+R LN LQ
Sbjct: 227 QIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQ 267
>UNIPROTKB|F1NJA2 [details] [associations]
symbol:F1NJA2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00670000098003
EMBL:AADN02030010 IPI:IPI00599627 Ensembl:ENSGALT00000005217
Uniprot:F1NJA2
Length = 1760
Score = 117 (46.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 40/161 (24%), Positives = 69/161 (42%)
Query: 209 TELLSDEQT---NREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSF 265
TE LSD E +LW +++ SE+ +E+ R HS + + KK+ D
Sbjct: 957 TEYLSDTNALSVGVEDVLWTEKYQP-QDSSELVGNKKEIE---RLHSWLKEWKKRADWEE 1012
Query: 266 TRKNRGNRWSNGNFRXXXXXXXXXXXXKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKT 325
R +G + + + K + ++ +L+ GPPG+GKT
Sbjct: 1013 KRNQKGEK-EDKEHQDNSTDSLDSLDFKDDKSDIEEENNLCN-----TVLITGPPGVGKT 1066
Query: 326 TLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
+ A+ G+ + EVNAS RS I +++ + Q + V
Sbjct: 1067 AAVYACAQELGFKIFEVNASCQRSGRQILSQLKEATQSHQV 1107
Score = 79 (32.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 429 ASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALT 488
A+ RPVI ND +L +++ F PS+ S L+ +C E+++T L
Sbjct: 1245 ATAKRPVILTTNDPTF-SLMFDGYFEEIN-FQTPSLINAASYLQALCLAENLRTDVKDLA 1302
Query: 489 TLAEYTECDIRSCLNTLQF 507
TL CDIR + LQF
Sbjct: 1303 TLLATNNCDIRQSVLYLQF 1321
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 102 (41.0 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 314 LLLCGPPGLGKTTLAHVAA------KHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM 367
LL GPPG GKT+ A K V+E+NASDDR + IL ++
Sbjct: 50 LLFYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIF 109
Query: 368 ADSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D D + A+ +++
Sbjct: 110 KKGF-KLVILDEADAMTQDAQNALRRVIE 137
Score = 64 (27.6 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 438 ICNDL--YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
ICN L PAL+S + + F S ++++ RL+H+ ES+ + + + +
Sbjct: 148 ICNYLSKIIPALQS--RCTRFR-FGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVTLST 204
Query: 496 CDIRSCLNTLQ 506
D+R LN LQ
Sbjct: 205 GDMRRSLNILQ 215
Score = 49 (22.3 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 191 KPVVHEQLWVDKYAPNSFTELLSDE 215
+P WV+KY P + +L+S +
Sbjct: 8 QPQARNLPWVEKYRPQTLDDLISHQ 32
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 103 (41.3 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 314 LLLCGPPGLGKTT----LAH--VAAKHCGYHVVEVNASDDRSSSTIENKILDVVQM---- 363
L+ GPPG GKT+ LAH ++ V+E+NASDDR + + KI ++
Sbjct: 40 LIFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGINVVREKIKAYTRISISK 99
Query: 364 NSVMADSR---P--KCLVIDEIDGALGDGKGAVEVILKMVS 399
N + ++++ P K +V+DE D D + A+ I+++ S
Sbjct: 100 NKIHSETKEVLPSWKLVVLDEADMMTEDAQSALRRIIEIYS 140
Score = 69 (29.3 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 470 RLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQF---LDKKKEILNVMDI 520
+L +IC NE++ AL + E TE D+R ++ LQ ++ K + +V+D+
Sbjct: 179 KLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDV 232
Score = 42 (19.8 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 199 WVDKYAPNSFTELLSDEQTNREVLL 223
WV+KY P +++ Q N ++L
Sbjct: 6 WVEKYRPKRLDDIV--HQNNAVMML 28
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 103 (41.3 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 32/101 (31%), Positives = 54/101 (53%)
Query: 314 LLLCGPPGLGKTT----LAH--VAAKHCGYHVVEVNASDDRSSSTIENKILDVVQM---- 363
L+ GPPG GKT+ LAH ++ V+E+NASDDR + + KI ++
Sbjct: 40 LIFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGINVVREKIKAYTRISISK 99
Query: 364 NSVMADSR---P--KCLVIDEIDGALGDGKGAVEVILKMVS 399
N + ++++ P K +V+DE D D + A+ I+++ S
Sbjct: 100 NKIHSETKEVLPSWKLVVLDEADMMTEDAQSALRRIIEIYS 140
Score = 69 (29.3 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 470 RLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQF---LDKKKEILNVMDI 520
+L +IC NE++ AL + E TE D+R ++ LQ ++ K + +V+D+
Sbjct: 179 KLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDV 232
Score = 42 (19.8 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 199 WVDKYAPNSFTELLSDEQTNREVLL 223
WV+KY P +++ Q N ++L
Sbjct: 6 WVEKYRPKRLDDIV--HQNNAVMML 28
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 112 (44.5 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC---GYH--VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG+GKTT A+ Y V+E+NAS++R + NKI Q +
Sbjct: 52 IIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLP 111
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
R K +++DE D + A+ +++ S+ + A K +P
Sbjct: 112 RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEP 160
Score = 55 (24.4 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 199 WVDKYAPNSFTELLSDEQT 217
W++KY P F E++ +E T
Sbjct: 18 WIEKYRPVKFKEIVGNEDT 36
Score = 44 (20.5 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 459 FIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
F + S ++V+++L + E + + L + + D+R LN LQ
Sbjct: 170 FTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQ 217
Score = 37 (18.1 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 831 KTNNAAVSAKLIEKSK 846
K ++A V AKLIE +K
Sbjct: 172 KLSDAQVLAKLIEVAK 187
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 112 (44.5 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC---GYH--VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ G PG+GKTT H A Y V+E+NASDDR + N+I Q +
Sbjct: 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLP 104
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVS 399
+ K +++DE D + A+ +++ S
Sbjct: 105 PGKHKIVILDEADSMTAGAQQALRRTMELYS 135
Score = 50 (22.7 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 467 VVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
V+ RL I E +K ++ L + E D+R +N LQ
Sbjct: 171 VLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210
Score = 48 (22.0 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 199 WVDKYAPNSFTELLSDEQT 217
WV+KY P ++++ +++T
Sbjct: 11 WVEKYRPQVLSDIVGNKET 29
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 112 (44.5 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 314 LLLCGPPGLGKTT----LAH-VAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA 368
LL GPPG GKT+ LA + K+ V+E+NASDDR + N+I D + +
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS 108
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILK 396
K +++DE D + A+ +++
Sbjct: 109 KGF-KLIILDEADAMTNAAQNALRRVIE 135
Score = 54 (24.1 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 461 QPSVSRVVSR-LKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
QP + R + ++ +E +K S A L E + D+R LN LQ
Sbjct: 167 QPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQ 213
Score = 45 (20.9 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 176 LNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQ 216
+++S+E +S +LP WV+KY P + E+ +
Sbjct: 1 MSTSTEKRSKENLP---------WVEKYRPETLDEVYGQNE 32
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 110 (43.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKTT + +A G V+E+NAS+DR + NKI Q +
Sbjct: 70 IIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 129
Query: 369 DSRPKCLVIDEIDGALGDG 387
R K +++DE D ++ DG
Sbjct: 130 KGRHKIIILDEAD-SMTDG 147
Score = 56 (24.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 195 HEQL-WVDKYAPNSFTELLSDEQTNREVLLWLKQ 227
H +L WV+KY P E++ +E T + ++ K+
Sbjct: 31 HYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAKE 64
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
S ++V++RL + E + + L + + D+R LN +Q
Sbjct: 192 SDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQALNNVQ 235
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 110 (43.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKTT + +A G V+E+NAS+DR + NKI Q +
Sbjct: 70 IIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 129
Query: 369 DSRPKCLVIDEIDGALGDG 387
R K +++DE D ++ DG
Sbjct: 130 KGRHKIIILDEAD-SMTDG 147
Score = 54 (24.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 195 HEQL-WVDKYAPNSFTELLSDEQT 217
H +L WV+KY P E++ +E T
Sbjct: 31 HYELPWVEKYRPVKLNEIVGNEDT 54
Score = 46 (21.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
++++RL + E ++ + L + + D+R LN LQ
Sbjct: 195 QILARLLSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQ 235
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 107 (42.7 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYHV----VEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKTT + +A G + +E+NAS+DR + NKI Q +
Sbjct: 72 IIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLP 131
Query: 369 DSRPKCLVIDEIDGALGDG 387
R K +++DE D ++ DG
Sbjct: 132 KGRHKIIILDEAD-SMTDG 149
Score = 54 (24.1 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 195 HEQL-WVDKYAPNSFTELLSDEQT 217
H +L WV+KY P E++ +E T
Sbjct: 33 HYELPWVEKYRPVKLNEIVGNEDT 56
Score = 47 (21.6 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 465 SRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
+++++RL ++ E + + L + + D+R LN LQ
Sbjct: 196 AQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQ 237
>UNIPROTKB|J9NTZ2 [details] [associations]
symbol:ATAD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 GeneTree:ENSGT00670000098003
EMBL:AAEX03006644 EMBL:AAEX03006645 Ensembl:ENSCAFT00000043833
Uniprot:J9NTZ2
Length = 1836
Score = 100 (40.3 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
+L+ GP G+GKT + A+ G+ + EVNAS RS I +++ + Q + V
Sbjct: 1121 VLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQV 1173
Score = 77 (32.2 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 26/80 (32%), Positives = 35/80 (43%)
Query: 429 ASLLRPVICICNDLYAPALRSLRQIAKVHV-FIQPSVSRVVSRLKHICNNESMKTSSIAL 487
A+ RPVI +D P + + F PS+ V S L+ IC E+ +T
Sbjct: 1318 ATTKRPVILTTSD---PTFSLMFDGCFEEINFSTPSLRNVASYLQMICLAENFRTDVKDF 1374
Query: 488 TTLAEYTECDIRSCLNTLQF 507
TL CDIR + LQF
Sbjct: 1375 VTLLTANTCDIRKSILYLQF 1394
Score = 57 (25.1 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 139 VEERVKKLDVRAHSNSLTSEPIDVLLQKVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQL 198
VE + K R N + P + + E + N + N +G S S E + L
Sbjct: 997 VETDIHK-SKRKKPNESSPSPKKINEKPEELDKRNNS-NRIKQGLSKNSGTE-----DML 1049
Query: 199 WVDKYAPNSFTELLSDE 215
W +KY P + EL+ +E
Sbjct: 1050 WTEKYQPQNSNELIGNE 1066
Score = 44 (20.5 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 25/98 (25%), Positives = 45/98 (45%)
Query: 642 SQIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHIL 701
S+ +KP + K Q+ + ++ D+F + ++SR ++ S EDS +
Sbjct: 1544 SEGEKPLKKPQKKKQKKKMEILDDSDLFDTELDFSNEFLSRSPASSSNSEDSKARDKE-- 1601
Query: 702 SPPTLRPVALHLLSAKE-----KNDLAQLVSAMVSYSL 734
S P ++ + L S KE K + SA+VS+ L
Sbjct: 1602 SNPDVKKLNKCLESNKESIPCPKTPAEKKCSALVSHCL 1639
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 110 (43.8 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTT-LAHVAAKHCGYH----VVEVNASDDRSSSTIENKILDVVQMNSVMA 368
+++ GPPG GKTT + +A G V+E+NAS+DR + NKI Q +
Sbjct: 82 IIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 141
Query: 369 DSRPKCLVIDEIDGALGDG 387
R K +++DE D ++ DG
Sbjct: 142 KGRHKIIILDEAD-SMTDG 159
Score = 56 (24.8 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 195 HEQL-WVDKYAPNSFTELLSDEQTNREVLLWLKQ 227
H +L WV+KY P E++ +E T + ++ K+
Sbjct: 43 HYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAKE 76
Score = 42 (19.8 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
S ++V++RL + E + + L + + D+R LN +Q
Sbjct: 204 SDAQVLARLLTVLEQEKVPYTDDGLEAVIFTAQGDMRQALNNVQ 247
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 111 (44.1 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC-GYHV----VEVNASDDRSSSTIENKILDVVQMNSVMA 368
++L GPPG GKTT A+ G V +E+NASD+R + ++I Q +
Sbjct: 46 IVLSGPPGCGKTTSVWALARELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLP 105
Query: 369 DSRPKCLVIDEIDGALGDG 387
+ R K +++DE D ++ DG
Sbjct: 106 EGRHKIIILDEAD-SMTDG 123
Score = 50 (22.7 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILN 516
++++R+K + E + L + + D+R LN LQ E++N
Sbjct: 171 QLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAYELVN 221
Score = 44 (20.5 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 199 WVDKYAPNSFTELLSDE 215
WV+KY P +++ +E
Sbjct: 12 WVEKYRPKVLADIVGNE 28
>POMBASE|SPBC947.11c [details] [associations]
symbol:elg1 "DNA replication factor C complex subunit
Elg1" species:4896 "Schizosaccharomyces pombe" [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000781 "chromosome,
telomeric region" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=ISO]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=ISO] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=IC]
InterPro:IPR003959 Pfam:PF00004 PomBase:SPBC947.11c GO:GO:0005829
GO:GO:0005524 EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR
GO:GO:0006261 GO:GO:0000790 GO:GO:0043596 GO:GO:0006310
eggNOG:COG0470 GO:GO:0000781 GO:GO:0000723 GO:GO:0007064 PIR:T40771
RefSeq:NP_595265.1 ProteinModelPortal:O43086 STRING:O43086
EnsemblFungi:SPBC947.11c.1 GeneID:2541276 KEGG:spo:SPBC947.11c
KO:K11134 OrthoDB:EOG4KM2BD NextBio:20802388 GO:GO:0005663
GO:GO:0031391 Uniprot:O43086
Length = 920
Score = 132 (51.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 53/237 (22%), Positives = 101/237 (42%)
Query: 174 KALNSSSEGQSDRSLPEKPVVHEQ-LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCV 232
K L+ + +P P + E+ LWV KYAP+ + + Q ++ WL+ SC
Sbjct: 299 KVLSRLLPSDPNVEMPMIPQILEKGLWVSKYAPSKTQDCCAFSQCLSKIADWLR---SCR 355
Query: 233 FGSEIRSTSEEVLSALRRHSTISQ--NKKQNDSSFTRKNRGNRWSNGNFRXXXXXXXXXX 290
++ S+S S++ R STI + K+N+ S S +F
Sbjct: 356 L-TKPESSSVPPSSSISRSSTIHSCTSSKRNEDSL---------SESDFEPDIIEEEDDS 405
Query: 291 XXKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS 350
S KK + T +L+ G G+GKT+ + + + VVE++ RS
Sbjct: 406 DEFNPSVS-RKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAICRELNFEVVEIHPGMRRSG 464
Query: 351 STIENKILDVVQMNSV---MADSRPKCLVI-DEIDGALGDGKGAVEVILKMVSAERK 403
+ +I ++ Q + V ++ P L++ +E+D D +G + + ++ ++
Sbjct: 465 KELLERIGELTQSHIVDKSRLNNTPDILILLEEVDILFQDDRGFWQAVSTLIEKSKR 521
Score = 45 (20.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 647 PNL-EW-----PKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDS 693
PNL W PKS + A MEK+ I+ ++ Y+ S++ + ++
Sbjct: 659 PNLVNWRKVCVPKSEMEEKEAIMEKL-IYSHQYADSLSYVDYRFSSQPTIYET 710
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 99 (39.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC-G-----YHVVEVNASDDRSSSTIENKILDVVQM--NS 365
LL GPPG GKT+ AA+ G V+E+NASD+R + K+ + Q+ +
Sbjct: 74 LLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSG 133
Query: 366 VMADSRP----KCLVIDEIDGALGDGKGAV 391
+D +P K +++DE D + A+
Sbjct: 134 SRSDGKPCPPFKIVILDEADSMTSAAQAAL 163
Score = 52 (23.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 178 SSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQ 216
++S G S + KPV WV+KY P E+ E+
Sbjct: 23 AASAGSSGENKKAKPVP----WVEKYRPKCVDEVAFQEE 57
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 100 (40.3 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC-G-----YHVVEVNASDDRSSSTIENKILDVVQM--NS 365
LL GPPG GKT+ AA+ G V+E+NASD+R + K+ + Q+ +
Sbjct: 74 LLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSG 133
Query: 366 VMADSRP----KCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAK 408
+D +P K +++DE D A + L+ + E++S T +
Sbjct: 134 SRSDGKPCPPFKIVILDEADSMTS----AAQAALRR-TMEKESKTTR 175
Score = 53 (23.7 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 470 RLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQF---LDKKKEILN--VMDIGSQV 524
RL I E++K S + L + +E D+R + LQ L KEI + DI +
Sbjct: 210 RLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGDL 269
Query: 525 V 525
+
Sbjct: 270 I 270
Score = 52 (23.4 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 178 SSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQ 216
++S G S + KPV WV+KY P E+ E+
Sbjct: 23 AASAGSSGENKKAKPVP----WVEKYRPKCVDEVAFQEE 57
>UNIPROTKB|F1MNE5 [details] [associations]
symbol:FIGNL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051726 "regulation of cell cycle" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0033687 "osteoblast proliferation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001649 "osteoblast differentiation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR003960
Pfam:PF00004 PROSITE:PS00674 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0051726
GO:GO:0017111 GO:GO:0001649 InterPro:IPR015415 Pfam:PF09336
GeneTree:ENSGT00570000078874 OMA:QILRIQY GO:GO:0033687
EMBL:DAAA02009676 IPI:IPI00906035 Ensembl:ENSBTAT00000001962
Uniprot:F1MNE5
Length = 683
Score = 102 (41.0 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 31/85 (36%), Positives = 42/85 (49%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
GPP K +LL GPPG GKT + A G ++AS S E + + V + +V
Sbjct: 441 GPP--KGILLFGPPGTGKTLIGKCIASQAGATFFSISASSLTSKWVGEGEKM-VRALFAV 497
Query: 367 MADSRPKCLVIDEIDGAL---GDGK 388
+P + IDEID L GDG+
Sbjct: 498 ARCQQPAVIFIDEIDSLLSQRGDGE 522
Score = 72 (30.4 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 160 IDVLLQKVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQLWVDK 202
ID L + +AF+K ++ G+S SLP EQLWVD+
Sbjct: 275 IDALSTPILNKAFSKTEDNGQRGES--SLPAFKTAKEQLWVDQ 315
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 100 (40.3 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 314 LLLCGPPGLGKTTLAHVAAKHC-G-----YHVVEVNASDDRSSSTIENKILDVVQM--NS 365
LL GPPG GKT+ AA+ G V+E+NASD+R + K+ + Q+ +
Sbjct: 74 LLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSG 133
Query: 366 VMADSRP----KCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAK 408
+D +P K +++DE D A + L+ + E++S T +
Sbjct: 134 SRSDGKPCPPFKIVILDEADSMTS----AAQAALRR-TMEKESKTTR 175
Score = 53 (23.7 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 470 RLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQF---LDKKKEILN--VMDIGSQV 524
RL I E++K S + L + +E D+R + LQ L KEI + DI +
Sbjct: 210 RLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVI 269
Query: 525 VGRK 528
K
Sbjct: 270 PAEK 273
Score = 52 (23.4 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 178 SSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQ 216
++S G S + KPV WV+KY P E+ E+
Sbjct: 23 AASAGSSGENKKAKPVP----WVEKYRPKCVDEVAFQEE 57
>UNIPROTKB|Q96QE3 [details] [associations]
symbol:ATAD5 "ATPase family AAA domain-containing protein
5" species:9606 "Homo sapiens" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 PROSITE:PS00674
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0006974
GO:GO:0017111 EMBL:AJ314648 EMBL:AY557611 EMBL:AL832103
EMBL:BC015051 EMBL:AK022797 EMBL:AC127024 EMBL:AC130324
IPI:IPI00102575 IPI:IPI00885113 RefSeq:NP_079133.3
UniGene:Hs.528902 HSSP:P38630 ProteinModelPortal:Q96QE3 SMR:Q96QE3
STRING:Q96QE3 PhosphoSite:Q96QE3 DMDM:296439460 PaxDb:Q96QE3
PRIDE:Q96QE3 DNASU:79915 Ensembl:ENST00000321990 GeneID:79915
KEGG:hsa:79915 UCSC:uc002hfs.1 CTD:79915 GeneCards:GC17P029159
HGNC:HGNC:25752 MIM:609534 neXtProt:NX_Q96QE3 PharmGKB:PA162377100
eggNOG:COG0470 HOGENOM:HOG000034121 HOVERGEN:HBG101177
InParanoid:Q96QE3 OMA:LDVYNAV OrthoDB:EOG4NP731 PhylomeDB:Q96QE3
ChEMBL:CHEMBL1741209 GenomeRNAi:79915 NextBio:69790
ArrayExpress:Q96QE3 Bgee:Q96QE3 CleanEx:HS_ATAD5
Genevestigator:Q96QE3 Uniprot:Q96QE3
Length = 1844
Score = 102 (41.0 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 54/222 (24%), Positives = 92/222 (41%)
Query: 162 VLLQK-VEQEAFNKALNSSSEGQSDRSLPE---KPVVHEQLWVDKYAPNSFTELLSDEQT 217
+LL+K +E + + +S E ++D S E K V E + PN +++ L E+T
Sbjct: 966 LLLKKQIEHQVLSSECHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNL--EKT 1023
Query: 218 NR--EVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275
NR E L S S +E++L + + N+ + + + W
Sbjct: 1024 NRKSEELSKRNNSSGIKLDSSKDSGTEDMLWTEKYQPQTASELIGNELAIKKLHS---WL 1080
Query: 276 NGNFRXXXXXXXXXXXXKGIQDSWHK--------KTRSTGPPEQKV---LLLCGPPGLGK 324
R KG +D H+ K S E ++ +L+ GP G+GK
Sbjct: 1081 KDWKRRAELEERQNL--KGKRDEKHEDFSGGIDFKGSSDDEEESRLCNTVLITGPTGVGK 1138
Query: 325 TTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
T + A+ G+ + EVNAS RS I +++ + Q + V
Sbjct: 1139 TAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQV 1180
Score = 78 (32.5 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 26/80 (32%), Positives = 35/80 (43%)
Query: 429 ASLLRPVICICNDLYAPALRSLRQIAKVHV-FIQPSVSRVVSRLKHICNNESMKTSSIAL 487
A+ RPVI +D P + + F PS+ V S L+ IC E+ +T
Sbjct: 1326 ATTKRPVILTTSD---PTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFRTDVKDF 1382
Query: 488 TTLAEYTECDIRSCLNTLQF 507
TL CDIR + LQF
Sbjct: 1383 VTLLTANTCDIRKSILYLQF 1402
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 948 840 0.00081 122 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 85
No. of states in DFA: 625 (66 KB)
Total size of DFA: 421 KB (2202 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 81.30u 0.12s 81.42t Elapsed: 00:00:04
Total cpu time: 81.32u 0.12s 81.44t Elapsed: 00:00:04
Start: Sat May 11 05:46:10 2013 End: Sat May 11 05:46:14 2013