BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002241
(948 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NU40|CTF18_XENLA Chromosome transmission fidelity protein 18 homolog OS=Xenopus laevis
GN=chtf18 PE=2 SV=1
Length = 1000
Score = 315 bits (807), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 272/894 (30%), Positives = 427/894 (47%), Gaps = 151/894 (16%)
Query: 117 DCLPVTAPSGGDRVYVKISSSGVEERVKKLDVRAHSNS---LTSEPIDVLLQKVEQEAFN 173
D + VT+ + G RVY+ + + K+ +++ +S L P L ++V E
Sbjct: 194 DYINVTS-TDGSRVYMALKEDNDGAQQKQGNLKWNSGQQLHLLGVPFSYLKEQVNDEHRR 252
Query: 174 KALNSSSE-------------GQSDRSLPE------------KPVVHEQLWVDKYAPNSF 208
K L S G++D + E +P H LWVD++ P +
Sbjct: 253 KVLEESQRLTEMLNSQINEEFGENDSEILENDDNAGEEDDEDEPSSH-SLWVDRFTPRHY 311
Query: 209 TELLSDEQTNREVLLWLKQWDSCVFGSE-IRSTSEEVLSALRRHSTISQNKKQNDSSFTR 267
TELLSD+ TNR +L WLK WD+ VFG E + + ++ H +N+K+ S F
Sbjct: 312 TELLSDDYTNRCLLKWLKLWDTVVFGKERVVRKPKAIVDPRANH---FKNQKEQQSKFKT 368
Query: 268 KNRGNRWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTL 327
K ++ ++ + P+ KV LLCGPPGLGKTTL
Sbjct: 369 K-----------------------AQITEEILEAELDHHNRPKNKVSLLCGPPGLGKTTL 405
Query: 328 AHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA-DSRPKCLVIDEIDGALGD 386
AHV A+H GY+VVE+NASDDRS +I QM SV+ D RP CL+IDEIDGA
Sbjct: 406 AHVIARHAGYNVVEMNASDDRSPEAFRTRIEAATQMKSVLGVDERPNCLIIDEIDGA--- 462
Query: 387 GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPA 446
++ ++L +V+ RK AKE A+ KKK + LLRP+ICICND Y P+
Sbjct: 463 PTVSINMLLSLVN--RKD--AKE--AEGGTEATTGKKKKKEGGLLLRPIICICNDQYVPS 516
Query: 447 LRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
LR LRQ A + F Q SR+V RL I + MK + AL L E TE DIRSC+NTLQ
Sbjct: 517 LRQLRQQAFMLNFPQTMPSRLVQRLYEIAVKQGMKADTGALMALCEKTENDIRSCINTLQ 576
Query: 507 FL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSN------ 559
FL + K+ LN+ + + +G KD ++ F +W+EIFQ K +R R ++N
Sbjct: 577 FLHGRGKKELNMRSVQTMRIGLKDQNKGLFSVWQEIFQLPKIQRKRIGQEVATNDLHLLL 636
Query: 560 -----------------VSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTV 602
V+ F + L ++ G+Y+ + G+++N L ++ +
Sbjct: 637 GSENDSLGMLAKPPLNAVAQRFHHILHLSTSTGEYEKLTMGLYDNFLNMKVKESNFSTVC 696
Query: 603 KCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRNAF 662
LD L +D+++ IM Q L Y P L + H L + P + +P S+ ++
Sbjct: 697 LALDWLEFTDIVNSTIMHGQNFQLMRYLPFLPVAFHLLFAASNVPRIAYPSSHYEAQSKL 756
Query: 663 MEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDL 722
+ ++ + S+I P I + +SLV D++ LL +LS P LRPV L S KEK L
Sbjct: 757 NQMQNLLNAMVSEISPAIRTRVGPQSLVLDALCLLLDVLS-PKLRPVNTQLFSTKEKQQL 815
Query: 723 AQLVSAMVSYSLTY--KNTKSDPLLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYV 780
A+L++ M++Y+LTY + T + L V DV D P+ + +T++
Sbjct: 816 AELINTMLAYNLTYHQERTMEGQYVYKLDPNV-EDVCRFP-DLPVRKPLTYQ-------- 865
Query: 781 LALAVKQVLVHEVEKQRIMQVTIGKSEHLADGYKENMDLAGEEDSKTESAKTNNAAVSAK 840
KQ++ E+E +R+ + + +++ + AG +++ +A AK
Sbjct: 866 ----TKQLIAREIELERMRRT---------EAFQQARN-AGRDNTTAAAAVKTADPKGAK 911
Query: 841 LIEKSKSLPYSRQCNPSTSTVLTTLDSSRSSTASVKPKSSGDTKKSFRSSSSFFDR--FR 898
K +L + ++ + + +T KP+ FF R +
Sbjct: 912 SAAKPAALNHEQRLE----------NIMKKATFEEKPE------------KDFFGRQIVK 949
Query: 899 KLSGKVSQDNDNAVQKATVER------DSLPLLFKFNEGFTNAVKRPVRMRDFL 946
K++ V+ +A Q+ +VER + + F+FNEG +NAV+R + ++D L
Sbjct: 950 KVAAPVTA---SANQEESVERRIGKAVGNSDVWFRFNEGVSNAVRRNIYIKDLL 1000
>sp|Q8WVB6|CTF18_HUMAN Chromosome transmission fidelity protein 18 homolog OS=Homo sapiens
GN=CHTF18 PE=1 SV=1
Length = 975
Score = 283 bits (725), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 191/562 (33%), Positives = 283/562 (50%), Gaps = 52/562 (9%)
Query: 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQN 257
LWVD++AP +TELLSD+ TNR +L WLK WD VFG E +
Sbjct: 281 LWVDEFAPRHYTELLSDDFTNRCLLKWLKLWDLVVFGHE------------------RPS 322
Query: 258 KKQNDSSFTRKNRGNRWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLC 317
+K S + + G +++ + E G+ S P+QKV LLC
Sbjct: 323 RKPRPSVEPARVSKEATAPGKWKSHEQV-LEEMLEAGLDPSQR--------PKQKVALLC 373
Query: 318 GPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM-ADSRPKCLV 376
GPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM SV+ A +P CLV
Sbjct: 374 GPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEVFRTRIEAATQMESVLGAGGKPNCLV 433
Query: 377 IDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVI 436
IDEIDGA A+ V+L +++ + + A P +++ + L+RP+I
Sbjct: 434 IDEIDGA---PVAAINVLLSILNRKGPQEVGPQGPAV---PSGGGRRRRAEGGLLMRPII 487
Query: 437 CICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC 496
CICND +AP+LR L+Q A + F SR+V RL+ + + M+ L L E T+
Sbjct: 488 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDN 547
Query: 497 DIRSCLNTLQFL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLR---- 551
DIR+C+NTLQFL + + L+V D+ + VG KD R F +W+E+FQ + +R R
Sbjct: 548 DIRACINTLQFLYSRGQRELSVRDVQATRVGLKDQRRGLFSVWQEVFQLPRAQRRRVGQD 607
Query: 552 ------------NSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVML 599
S ++ S F + ++ G+++ + G+ +N L+L+ D +
Sbjct: 608 PALPADTLLLGDGDAGSLTSASQRFYRVLHAAASAGEHEKVVQGLFDNFLRLRLRDSSLG 667
Query: 600 KTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYR 659
LD L DL+ +Q L Y P L + H L + P + +P S Q +
Sbjct: 668 AVCVALDWLAFDDLLAGAAHHSQSFQLLRYPPFLPVAFHVLFASSHTPRITFPSSQQEAQ 727
Query: 660 NAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEK 719
N + ++ ++ S I P +R +T + LL + P LRPV+ L S +EK
Sbjct: 728 NRMSQMRNLIQTLVSGIAP-ATRSRATPQALLLDALCLLLDILAPKLRPVSTQLYSTREK 786
Query: 720 NDLAQLVSAMVSYSLTYKNTKS 741
LA LV M++YSLTY+ ++
Sbjct: 787 QQLASLVGTMLAYSLTYRQERT 808
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 893 FFDRFRKLSGKVSQDNDNAVQKATVER------DSLPLLFKFNEGFTNAVKRPVRMRDFL 946
FF R S V D A ++ +VER + F+FNEG +NAV+R + +RD L
Sbjct: 916 FFGRVVVRSTAVPSAGDTAPEQDSVERRMGTAVGRSEVWFRFNEGVSNAVRRSLYIRDLL 975
>sp|Q8BIW9|CTF18_MOUSE Chromosome transmission fidelity protein 18 homolog OS=Mus musculus
GN=Chtf18 PE=2 SV=2
Length = 969
Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 234/778 (30%), Positives = 359/778 (46%), Gaps = 113/778 (14%)
Query: 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQN 257
LWVD++AP +TELLSD+ TNR +L WLK WD VFG E A + +
Sbjct: 276 LWVDEFAPQHYTELLSDDFTNRCLLKWLKLWDLVVFGRE--------RPARKPRPGVETT 327
Query: 258 KKQNDSSFTRKNRGNRWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLC 317
+ +++ K W S+ + +++ + + P QKV LLC
Sbjct: 328 RVGKEATAPGK-----W--------------KSHEQALEEMLEAELDPSQRPRQKVALLC 368
Query: 318 GPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA-DSRPKCLV 376
GPPGLGKTTLAHV A+H GY VVE+NASDDRS +I QM SV+ RP CLV
Sbjct: 369 GPPGLGKTTLAHVVARHAGYCVVEMNASDDRSPEAFRTRIEAATQMESVLGVGGRPNCLV 428
Query: 377 IDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVI 436
IDEIDGA A+ V+L +++ RK + ++ + L RP+I
Sbjct: 429 IDEIDGA---PTAAINVLLGILN--RKGPQEADQGGTAVAAGGRRRRA--EGGLLTRPII 481
Query: 437 CICNDLYAPALRSLRQIAKVHVFIQPSV-SRVVSRLKHICNNESMKTSSIALTTLAEYTE 495
CICND + P+LR L+Q A + + + P++ SR+V RL+ I M++ AL L E T+
Sbjct: 482 CICNDQFTPSLRQLKQQALL-LHVPPTLPSRLVQRLQEISLQHGMRSDPGALVALCEKTD 540
Query: 496 CDIRSCLNTLQFL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKR----- 549
DIR+C+NTLQFL + + L+V + + VG KD + F +W+E+FQ +T+R
Sbjct: 541 NDIRACINTLQFLYGRGRRELSVKAVQTTHVGLKDQRKGLFSVWQEVFQLPRTQRRIVGQ 600
Query: 550 ----------LRNSVSSSSNVSNE-FDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVM 598
L N S ++++ F + + ++ G+++ + G+ +N L+L+ D
Sbjct: 601 DLMLPAHALLLSNGDKGSLTLASQRFYHILRVTTSAGEHEKVVQGLFDNFLRLRLRD-SS 659
Query: 599 LKTVKC-LDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQR 657
L TV C LD L DL+ Q R Q L Y P + H L + P + +P S Q
Sbjct: 660 LSTVCCALDWLAFDDLLEQAAHRGQSFQLLCYLPFVPAAFHVLFASSHVPRITFPSSQQE 719
Query: 658 YRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAK 717
+ + + ++ S + P +R +T + LL + P LRPV+ L SA
Sbjct: 720 AQTRMSQTRNHIQTLVSGMAP-TTRSRATPQALVLDTLCLLLDVLAPKLRPVSTQLYSAH 778
Query: 718 EKNDLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTL-SFDPPINEFITFKGYRS 776
EK L+ LV M++YSLTY E + D L +P + E F +
Sbjct: 779 EKQQLSCLVGTMLAYSLTYH------------QERTPDGQYLYKLEPNVEEVCRFPELPA 826
Query: 777 NHYVLALAVKQVLVHEVEKQRIMQVTIGKSEHLADGYKENMDLAGEEDSKTESAKTNNAA 836
L KQ++ E+E +++ ++E LA + + + A+
Sbjct: 827 RK-PLTYQAKQLIAREIEMEKMR-----RAEALA---------WARSGPQVDQGSSGPAS 871
Query: 837 VSAKLIEKSKSLPYSRQCNPSTSTVLTTLDSSRSSTASVKPKSSGDTKKSFRSSSSFFDR 896
+ EK P R ++ + +T +P+ FF R
Sbjct: 872 LWTDSGEKGTRQPAPRNHEQRLEHIM------KRATVQEQPE------------RDFFGR 913
Query: 897 --FRKLS------GKVSQDNDNAVQKATVERDSLPLLFKFNEGFTNAVKRPVRMRDFL 946
RK++ +D D V R + F+FNEG +NAV+R + +RD L
Sbjct: 914 VVIRKVAVPSREVEAPQKDADEWRMGVAVGRSE--VWFRFNEGVSNAVRRSLYIRDLL 969
>sp|Q9USQ1|CTF18_SCHPO Chromosome transmission fidelity protein 18 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ctf18 PE=1 SV=1
Length = 960
Score = 173 bits (438), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 148/547 (27%), Positives = 264/547 (48%), Gaps = 51/547 (9%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA 368
P++++++L G G GKTTLAHV A GY V+E+NASDDR++ T+ K+ + +S ++
Sbjct: 414 PDKRIMMLTGLAGAGKTTLAHVIAHQAGYKVLEINASDDRTAHTVHEKVSSAISNHSALS 473
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428
S+P C+++DEIDG GD V +L ++ ++ K+ + + + KK K
Sbjct: 474 -SQPTCVIVDEIDG--GD-PAFVRALLSLLESDEKAT---------EYSQAGNSKKKKKF 520
Query: 429 ASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALT 488
L RP+ICICNDLY PALR LR A++ F P + +V RL+ IC NE++ S +LT
Sbjct: 521 KKLCRPIICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRSLT 580
Query: 489 TLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTK 548
L + DIRSC+N+LQ L + ++ I +++ K S S + + +F + K
Sbjct: 581 LLTDIYNSDIRSCINSLQLLSLNNKRIDSETI--KLLQPKSNSFSTSSLIQSLFLQLDNK 638
Query: 549 RLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCL 608
++R ++ +S + D L + I D + + L L + D ++ K + L
Sbjct: 639 QIR-AIEASQPTYSHLDALLARIDGANDSESVLMNCFHTYLDLPFTDSLLSKPALTSEWL 697
Query: 609 GNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEW-PKSYQRYRNAFMEKMD 667
D +H + L+ Y P I H L + +K L P+S + + +
Sbjct: 698 YFFDQLHSQCYKG-NYELWRYIPYSIIHFHYLYATPEKCRLPHPPRSDLEALKLYRTRKE 756
Query: 668 IFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVS 727
I S+ S + Y ++ S++ + I +L I PTL+ + + + + ++
Sbjct: 757 ILDSFISTLNAYENQMHGERSILLELIRTIL-ITINPTLKQKEDSMPRSALPSKIEHAIN 815
Query: 728 AMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYVLALAVKQ 787
+ Y+L ++ P+ + GN V +PP++E + + S++ +V+Q
Sbjct: 816 ILNHYNLRFQQL---PVGD--GNYV------YRLEPPLDELV-WDAPTSSY-----SVRQ 858
Query: 788 VLVHEVEKQRIMQV-------------TIGKSEHLADGYKENMDLAGE--EDSKTESAKT 832
+L E+ K+R+ + + K + G D G + K+E+ +
Sbjct: 859 MLSQELLKKRLADIKKQTLTDNPTSSNSSRKRKDFNSGKAIKRDFFGRIISEPKSEAVTS 918
Query: 833 NNAAVSA 839
NNAA++
Sbjct: 919 NNAALNT 925
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFG 234
++LWVD Y P F +LL DE+ +R + W+K WD CVFG
Sbjct: 350 QKLWVDTYRPQLFRDLLGDERVHRAAMHWIKAWDPCVFG 388
>sp|P49956|CTF18_YEAST Chromosome transmission fidelity protein 18 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CTF18 PE=1
SV=1
Length = 741
Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 139/479 (29%), Positives = 230/479 (48%), Gaps = 56/479 (11%)
Query: 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA 368
P +K+LLL GPPG+GKT++AHV AK G+ V E+NASD+R+ ++ KI +++ ++
Sbjct: 174 PPKKILLLHGPPGIGKTSVAHVIAKQSGFSVSEINASDERAGPMVKEKIYNLLFNHTF-- 231
Query: 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428
D+ P CLV DEIDG++ G + +++ ++ ++ K+ N QP+K KK+ K+
Sbjct: 232 DTNPVCLVADEIDGSIE--SGFIRILVDIMQSDIKAT----NKLLYGQPDKKDKKRKKKR 285
Query: 429 ASLL-RPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIAL 487
+ LL RP+ICICN+LYAP+L L+ ++ +PS + ++ RL IC+ E+M A+
Sbjct: 286 SKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAI 345
Query: 488 TTLAEYTECDIRSCLNTLQFL-------DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKE 540
L + + D+R+C+N LQFL D + KD S F I +
Sbjct: 346 NDLIDLAQGDVRNCINNLQFLASNVDSRDSSASDKPACAKNTWASSNKDSPISWFKIVNQ 405
Query: 541 IFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLK 600
+F+K + ++ +F L + + G+ D I G ++Y D + K
Sbjct: 406 LFRKDPHR----------DIKEQFYELLNQVELNGNSDRILQGCFNIFPYVKYSDNGIRK 455
Query: 601 TVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRN 660
D L DLM+Q M L Y + + + I K R +N
Sbjct: 456 PANISDWLFFHDLMYQS-MYAHNGELLRYSALVPLVFFQTFGDIAN------KDDIRMKN 508
Query: 661 AFMEKMDIFKSWHSKIPPYISRHLSTESLV----EDSISPLLHILSPPTLRPVA------ 710
+ E+ ++ K +S I I RH+S +S + D S + IL P L +
Sbjct: 509 SEYEQREL-KRANSDIVSLIMRHISVQSPLMASFTDRKSLIFEIL--PYLDSMISSDFNK 565
Query: 711 LHLLSAKEKNDLAQLVSAMVSYSLTYKNTKSDPLLNNLGNEVSHDVSTLSFDPPINEFI 769
+ L K+ + +LV + S+ L +S+ G +V L+ DPPI+E +
Sbjct: 566 IRNLKLKQA-IMEELVQLLKSFQLNLIQNRSE------GFDVR---GGLTIDPPIDEVV 614
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 160 IDVLLQKVEQEAFNKALNSSSEGQSDRSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNR 219
I+ LL K+E + + Q + K + + LWV+K+ P F +L+ +E+TNR
Sbjct: 83 INYLLDKIEASG-----DDRTNAQKTSPITGK-IGSDTLWVEKWRPKKFLDLVGNEKTNR 136
Query: 220 EVLLWLKQWDSCVFGSEI 237
+L WL+QW VF ++
Sbjct: 137 RMLGWLRQWTPAVFKEQL 154
>sp|P0C1D3|CTF18_EMENI Chromosome transmission fidelity protein 18 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=ctf18 PE=3 SV=1
Length = 993
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 176/748 (23%), Positives = 280/748 (37%), Gaps = 188/748 (25%)
Query: 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQN 257
+W +KY +TEL+ DE+TNR +L WL+ WD V+ S R+ QN
Sbjct: 257 MWTEKYRARKYTELIGDERTNRSILRWLRGWDPIVYPSLARA---------------KQN 301
Query: 258 KKQNDSSFTRKNRGNRWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLC 317
KK N+ R P +KVLLLC
Sbjct: 302 KKYNNDEEER-----------------------------------------PHRKVLLLC 320
Query: 318 GPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILD------VVQMNSVMADSR 371
GPPGLGKTTLAHV A+ GY V+E+NASD+RS ++ +I D V MN + + +
Sbjct: 321 GPPGLGKTTLAHVCARQAGYEVLEINASDERSRDVVKGRIRDALGTENVKGMNVELGEQK 380
Query: 372 PKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNT-----AKENVAKEDQPEKISKKKGC 426
+ + K+ T + N A+ + +K+
Sbjct: 381 VRKVGRPVCVVVDEVDGVVSGSGGSGEGGFMKALTDLVLLDQRNSARTSERASDGRKRKG 440
Query: 427 KKASLLRPVICICNDLYAPALRSLRQ--IAKVHVFIQPSVSRVVSRLKHICNNESMKTSS 484
LRP+I +CND+Y +LR LRQ +A++ Q + VVSR+K I E + + S
Sbjct: 441 DNFRFLRPLILVCNDVYHASLRPLRQSSVAEIIHVRQAPLENVVSRMKSIFTLEGIPSDS 500
Query: 485 IALTTLAEYT-----------------ECDIRSCLNTLQFLDKK---------------- 511
+ L E + E DIRS L +++ K
Sbjct: 501 DGVRRLCEASWGLAKRKQRGVRSTGAAEGDIRSVLVAAEWVAHKLRNESSAPLRLTRNWL 560
Query: 512 -KEILNVMDIGSQVVGRKDMSRSAF-DIWKEIFQKRKT--------KRLRNSVSSSSNVS 561
+ +L GS G M+R DI +F + + L++ S VS
Sbjct: 561 EQRVLADAGGGSFFKG---MNRGGVRDIVDRVFTEGAGFPDVPLGDESLQDPYDRSEAVS 617
Query: 562 ---------NEFDFLHSLISNRGDYD-VIFDGIHENILQLQYHDPVMLKTVKCLDCLGNS 611
+ L ++ GD+D + LQ D + K D L
Sbjct: 618 VDVANIKKRHAIRRLCEMVDASGDHDRCTSECFSSYPLQPYQDDTFLTKPNAAYDWLHFH 677
Query: 612 DLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYR------------ 659
D + I L Y H L + Q K+ Q+YR
Sbjct: 678 DTISSRIYSAHDWELGAYLSQATSAFHLLFATAQG------KAQQQYREIDEEEEEAHPF 731
Query: 660 ----------NAFMEKMDIFKSWHSKI-PPYISRHLSTESLVEDSISPLLHILSPPTLRP 708
A + I ++ S P + S+ ++ + I ++ +LS P ++P
Sbjct: 732 SGPRADYAAFEATKQNQAILSTFQSSFSAPLLRLFRSSNNVATELIPNVIRMLS-PDIKP 790
Query: 709 VALH------LLSAKEKNDLAQLVSA---MVSYSLTYKNTKSDPLLNNLGNEVSHDVSTL 759
V + + S +++++ A + SA M +T++ + + N G H
Sbjct: 791 VVVRGSEQKSVASVRKESERALVQSAVRVMTGLGVTFEKVR----IENEGG--GHGGWAY 844
Query: 760 SFDPPINEFITFK---GYRSNHYVLALAVKQVLVHEVEKQRIMQVTIGKSEHLADGYKEN 816
+PP++ ++F G+ S + AV+QVL E K+ I + + EN
Sbjct: 845 RMEPPLDALVSFSKVPGFSSATNPVRYAVRQVLDQEYRKESIRKNS------------EN 892
Query: 817 MDLAGEEDSKTESAKTN---NAAVSAKL 841
+ G + S T+S N A +AKL
Sbjct: 893 LSSTGSKKSTTKSDDIETPANPAEAAKL 920
>sp|A1RWU6|RFCL_THEPD Replication factor C large subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcL PE=3 SV=1
Length = 413
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 177/374 (47%), Gaps = 65/374 (17%)
Query: 297 DSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENK 356
+SW K G P +K LL GPPG GKT++ H AK + ++E+NASD R+ ++ +
Sbjct: 38 NSWVK-----GKPSKKAALLYGPPGSGKTSIVHATAKEFSWELIELNASDVRTREALQQR 92
Query: 357 ILDVVQMNSVMADSRPKCLVIDEIDG-ALGDGKGAVEVILKMVSAERKSNTAKENVAKED 415
+L + SV+ S K +++DE+DG + + G ++ I++++ KSN
Sbjct: 93 LLGALNTRSVLGYS-GKIILLDEVDGISTKEDAGGLQAIVELIE---KSNW--------- 139
Query: 416 QPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHIC 475
P++ ND + P LR LR + ++ F + ++ L++IC
Sbjct: 140 ------------------PIVLTANDPWDPKLRPLRDLCELIEFKKIGKRDIMKVLENIC 181
Query: 476 NNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAF 535
+ E ++ S L+ +A+ + D+R+ +N LQ L K+ +++ D+ Q++G + + F
Sbjct: 182 SKEGVECSREVLSAIADNAKGDLRAAINDLQSLAMGKKTISLADL--QILGDRAEQETIF 239
Query: 536 DIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHD 595
DI + + + ++ + L SL DY+++ + ENI+ QY +
Sbjct: 240 DIVRSVLTAKYPEQ-----------ALAVTRLPSL-----DYEMLMQWLSENIV-YQY-E 281
Query: 596 PVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSY 655
P + D L +D+M + R QQ L Y L + + S ++P P +
Sbjct: 282 PSLQAIADAYDALSWADIMLTRMKREQQWALLSY--ALELMTAGVASARERP----PFKF 335
Query: 656 QRYRNAFMEKMDIF 669
+Y +F EK+ I
Sbjct: 336 VKY--SFPEKLRIL 347
>sp|A3MS27|RFCL_PYRCJ Replication factor C large subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcL PE=3 SV=1
Length = 421
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 161/353 (45%), Gaps = 58/353 (16%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W K+ R E + +LL GPPG+GKTTL H AK GY +VE+NASD R+ I +
Sbjct: 45 WAKR-RDKEIKEARAVLLWGPPGIGKTTLVHALAKEIGYELVELNASDVRTGERIRQVVG 103
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
++ S+ + K ++ DE+DG + + G +E IL ++ TAK
Sbjct: 104 RGLREASLFGYA-GKIVLFDEVDGLHVKEDLGGLEAILNLI------ETAKV-------- 148
Query: 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477
P++ N+ + P LR LR I+ V + S VV LK IC +
Sbjct: 149 ----------------PIVLTANNPFDPKLRPLRDISLVVGLKRLSEDEVVEVLKRICAS 192
Query: 478 ESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDI 537
E K AL +LA+ + D+R+ +N LQ +++L V DI + G ++ S F+I
Sbjct: 193 EGAKCEEEALRSLAKSSYGDLRAAINDLQLYLAGRKVLTVDDI--KRAGERNPQLSMFEI 250
Query: 538 WKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPV 597
+++ R R +VS + + E F+ +L + + Y D
Sbjct: 251 LDRVYKARWFDEAR-AVSFNPSFDWEQYFVWAL----------------ETIPIVYKDLE 293
Query: 598 MLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQ-KPNL 649
++ + D L +D+ + RTQ+ L Y LA+ VSQ++ KP L
Sbjct: 294 VMS--EAFDRLSKADMFIGIVKRTQEWELLSYAMELALGG---VSQVKNKPRL 341
>sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1 OS=Dictyostelium discoideum
GN=rfc1 PE=3 SV=1
Length = 1401
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 161/362 (44%), Gaps = 84/362 (23%)
Query: 299 WHKKTRSTGP---PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIEN 355
W + ST P ++ +LL GPPG+GKT+ A + K G+ +E+NASD RS S I+
Sbjct: 876 WLDQWNSTAPRDASKKNAVLLSGPPGIGKTSAALLICKQKGFEAIELNASDARSKSEIK- 934
Query: 356 KILDVVQMNS----------------VMADSRPK-CLVIDEIDGALGDG-KGAVEVILKM 397
++L V N V A+ + K +++DEIDG+ G+ +G + I+ +
Sbjct: 935 RLLSGVSDNQNITKFFGTTNQDTGKDVQANKKIKTAIILDEIDGSSGNSDRGGIAEIIGL 994
Query: 398 VSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVH 457
+ KK+ + P IC+CND Y+ + SLR
Sbjct: 995 I----------------------------KKSKM--PFICLCNDYYSSKVTSLRNHCMDL 1024
Query: 458 VFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNV 517
+P++++V SRL I +E MK SS + + + DIR +NTLQ + + K N
Sbjct: 1025 KLRKPTLNQVSSRLLAIAKHEGMKVSSYMIEKVYTSSHSDIRQSINTLQMMSRSKRDYNN 1084
Query: 518 MDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDY 577
++ +Q + KD S F + I ++ +SN++ + D+ S D+
Sbjct: 1085 DNV-TQSLQEKDFDISPFTAAELILRE-----------DNSNINKKLDYFFS------DF 1126
Query: 578 DVIFDGIHENIL---------QLQYHDPVMLKTVKCLDCLGNSDLMHQYI---MRTQQMP 625
++ I EN L Q +Y+D ++ D L +SD + I M +P
Sbjct: 1127 SLVPLIIQENYLKTRPYGGGSQSKYNDCELISM--AADALSDSDQFGRAIGKEMAWNLLP 1184
Query: 626 LY 627
Y
Sbjct: 1185 TY 1186
Score = 37.4 bits (85), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 186 RSLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCV 232
+S+ P H+ LWV+KY P +++ + +E WL QW+S
Sbjct: 838 KSISTIPKGHDILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTA 884
>sp|P60373|RFCL_NANEQ Replication factor C large subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcL PE=3 SV=1
Length = 430
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 143/323 (44%), Gaps = 63/323 (19%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSR 371
K LLL GPPG GKT+ + A GY V+EVNASD+R + I + + + + + R
Sbjct: 69 KALLLYGPPGTGKTSSVYALANELGYEVLEVNASDERDAIHIHHIVGEASKGKPLFHKGR 128
Query: 372 PKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKAS 430
+++DE+DG G + +G V ++ ++ K++S
Sbjct: 129 --IILVDEVDGLSGKEDRGGVGALVNII----------------------------KQSS 158
Query: 431 LLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTL 490
P+IC ND + L+ LR+I+ + F + S V + LK I NE +K S L +
Sbjct: 159 W--PIICTANDPWDQKLKKLREISIMVEFKRLSPKHVYNVLKKIVTNEKIKISDKILWDI 216
Query: 491 AEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRL 550
A + D+R+ +N L+ I+ I V DI+K + KT+ L
Sbjct: 217 AYKSGGDLRAAINDLE------TIIKSGIIDENFVKALGNREQEIDIFKALGIMFKTENL 270
Query: 551 RNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTV----KCLD 606
+VS+ +NV EF D IF + ENI PV K + +
Sbjct: 271 ATAVSAFNNVDLEF-------------DEIFPWLEENI-------PVEYKRLDDIYRAYY 310
Query: 607 CLGNSDLMHQYIMRTQQMPLYVY 629
LG +D+ + I++TQ L VY
Sbjct: 311 WLGKADIFRKRIIKTQHWRLLVY 333
>sp|A1RSA3|RFCL_PYRIL Replication factor C large subunit OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcL PE=3 SV=1
Length = 423
Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 161/354 (45%), Gaps = 59/354 (16%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W KK + E K +LL GPPG+GKTT+ H A+ Y ++E+NASD R+ I+ +
Sbjct: 45 WAKK-KDKEIVEAKAVLLAGPPGIGKTTIVHALAREIKYELIELNASDVRTGERIKQVVG 103
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
++ S+ K ++ DE+DG + + G +E I++++ +AK
Sbjct: 104 RGLREASLFG-YEGKLVLFDEVDGLHVKEDLGGLETIVEII-----------EIAKV--- 148
Query: 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477
PVI N+ Y P R LR IA V + S VV L+ IC N
Sbjct: 149 ----------------PVIMTANNPYDPKFRPLRDIALVINLKRLSEDDVVEVLRRICAN 192
Query: 478 ESMKTSSIALTTLAEYTECDIRSCLNTLQ-FLDKKKEILNVMDIGSQVVGRKDMSRSAFD 536
E K AL ++A+ + D+R+ +N LQ +L K+IL V DI + VG ++ S F+
Sbjct: 193 EGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSSGKKILTVDDI--KRVGERNPQLSMFE 250
Query: 537 IWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDP 596
I +++ R R ++S + + E FL +L + Y D
Sbjct: 251 ILDRVYRARWFDEAR-AISFNPSFDWEQYFLWAL----------------ETIPTVYKDL 293
Query: 597 VMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQ-KPNL 649
++ D L +D+ I +TQ+ L Y L++ +SQ++ KP L
Sbjct: 294 ELMAI--AYDRLSKADMFLGRIKKTQEWELLPYALELSLGG---ISQVKNKPRL 342
>sp|A5UMF4|RFCL_METS3 Replication factor C large subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcL PE=3 SV=1
Length = 492
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 41/236 (17%)
Query: 289 NSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDR 348
N+ K + W ++ P QK LLL GPPG+GKTTLA A+ + +E+NASD R
Sbjct: 18 NNKEKALIQKWVDNWKAGNP--QKPLLLVGPPGIGKTTLAQAIAREFSEY-IELNASDKR 74
Query: 349 SSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTA 407
S I++ I + S+ D K L++DE+DG G + +G V I ++
Sbjct: 75 SQDVIKSTIGESSSSKSLFGDDY-KLLILDEVDGIHGTNDRGGVRAIGDII--------- 124
Query: 408 KENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLR---QIAKVHVFIQPSV 464
KKA P+I I ND Y+ + SL+ + K+ PS+
Sbjct: 125 -------------------KKAK--HPMILIANDFYSKRIASLKTKCDVLKMSKVRSPSI 163
Query: 465 SRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDI 520
+++ LK I NE +K + AL LA+ + D+RS +NT Q L + E+L + DI
Sbjct: 164 NKL---LKQIAINEGIKANPAALKELAKKSNGDMRSAINTFQALANQNEVLELSDI 216
>sp|Q8ZYK3|RFCL_PYRAE Replication factor C large subunit OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcL PE=3 SV=1
Length = 422
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 158/354 (44%), Gaps = 59/354 (16%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W KK R E K +LL GPPG+GKTTL H A+ Y ++E+NASD R++ + I
Sbjct: 45 WAKK-RDKEVAEAKAILLAGPPGVGKTTLVHALAREIRYELIELNASDVRTADRLRQVIG 103
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
++ +S+ K ++ DE+DG + + KG + TAK
Sbjct: 104 RGLRESSLFG-FEGKMVLFDEVDGLHVKEDKGG------LEEIIEIIETAKI-------- 148
Query: 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477
P+I N+ Y P R LR I+ V + S VV L+ IC +
Sbjct: 149 ----------------PIIMTANNPYDPKFRPLRDISLVVNLKRLSEEEVVEVLRRICTS 192
Query: 478 ESMKTSSIALTTLAEYTECDIRSCLNTLQ-FLDKKKEILNVMDIGSQVVGRKDMSRSAFD 536
E K AL ++A+ + D+R+ +N LQ +L + IL + DI + VG ++ S F+
Sbjct: 193 EGAKCEEEALRSIAKSSMGDLRAAINDLQMYLSGGRRILTLDDI--KRVGERNPQLSMFE 250
Query: 537 IWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDP 596
I +++ R R +VS + + E F+ +L S + + Y D
Sbjct: 251 ILDRVYKARWFDEAR-AVSFNPSFDWEQYFIWALES----------------IPVVYKDL 293
Query: 597 VMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQ-KPNL 649
+ T D L +D+ I RTQ+ L Y LA+ VSQI+ KP L
Sbjct: 294 EIAST--AYDRLSKADVFMGRIKRTQEWELLPYALELALGG---VSQIKGKPRL 342
>sp|A4WGV3|RFCL_PYRAR Replication factor C large subunit OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcL PE=3 SV=1
Length = 422
Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 69/359 (19%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W KK + + + +LL GPPG+GKTTL H A+ GY ++E+NASD R++ ++ +
Sbjct: 45 WAKK-KDKEILDARAVLLAGPPGVGKTTLIHALAREIGYELIELNASDVRTAERLKEVVG 103
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
++ S+ K ++ DE+DG + + G +E I++++ +
Sbjct: 104 RGLREGSLFGYG-GKIVLFDEVDGLHVKEDAGGLEAIIEIIENSKV-------------- 148
Query: 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477
P++ N+ Y P R LR I+ V + S VV L+ IC +
Sbjct: 149 ----------------PIVMTANNPYDPRFRPLRDISLVVNLKRLSEEEVVEVLRRICTS 192
Query: 478 ESMKTSSIALTTLAEYTECDIRSCLNTLQ-FLDKKKEILNVMDIGSQVVGRKDMSRSAFD 536
E K AL ++A+ + D+R+ +N LQ +L ++ L V DI + VG ++ S F+
Sbjct: 193 EGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSGGRKTLTVDDI--KRVGERNPQLSMFE 250
Query: 537 IWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISN-RGDYDVIFDGIHENILQLQYHD 595
I +++ R FD ++ N D++ F E I
Sbjct: 251 ILDRVYRAR-----------------WFDEARAISFNPSFDWEQYFIWATETI------- 286
Query: 596 PVMLKTVKCL----DCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQ-KPNL 649
PV+ K ++ + D L +D+ I RTQ+ L Y LA+ VSQI+ KP L
Sbjct: 287 PVVYKEIETMSVAYDRLSKADMFIGRIKRTQEWELLPYALELALGG---VSQIKSKPRL 342
>sp|A2BL93|RFCL_HYPBU Replication factor C large subunit OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=rfcL PE=3 SV=1
Length = 484
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/410 (23%), Positives = 175/410 (42%), Gaps = 65/410 (15%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W + PE+K L GP G+GKT+L AA G ++E+NASD R S IE +I
Sbjct: 32 WLRSWLQGRIPERKAALFYGPAGVGKTSLVEAAANEYGLELIEMNASDFRRKSDIE-RIA 90
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGALGDG-KGAVEVILKMVSAERKSNTAKENVAKEDQP 417
+ + + K +++DE+DG G +G ++ IL+++ N+ K
Sbjct: 91 KIAATQFSLFGRKRKIILLDEVDGISGTADRGGLDAILELI-----------NITKH--- 136
Query: 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477
P++ ND + L+ LR + + F + S VV LK IC
Sbjct: 137 ----------------PIVMTANDPWDQKLKPLRDASLMVPFYRLSERYVVQVLKRICAA 180
Query: 478 ESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDI 537
E+++ AL +A+ E D+RS +N LQ + + ++ V D+ ++ +D S +++
Sbjct: 181 ENIECEDEALKLIAQRAEGDLRSAINDLQAIAEGYGVVRV-DLVRALLATRDRQYSPWEM 239
Query: 538 WKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPV 597
+ +F + + + +V+ + DYD + I+ENI +QY P
Sbjct: 240 LRNLFMSKYIWQAKRAVTHTDL----------------DYDTLLQWINENI-AVQYTHPE 282
Query: 598 MLKTVKCLDCLGNSDLMHQYIMRTQQMPL--YVYQ---PPLAITVHRLVSQIQKPNLEWP 652
+ + L +D+ I R+ L YV+ P +A+ +K +W
Sbjct: 283 --DIWRAHEALARADIFLGRIKRSLSWDLLPYVFDLVGPGVALAR-------KKSKFKWA 333
Query: 653 KSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLST-ESLVEDSISPLLHIL 701
K + + K + + ++ L T ++ V+ + P L I+
Sbjct: 334 KYQFPQKILMLAKTKEVREIREAVAEVFAKRLHTSKATVKREVLPFLFII 383
>sp|B1YC69|RFCL_PYRNV Replication factor C large subunit OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rfcL PE=3 SV=1
Length = 422
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 163/358 (45%), Gaps = 67/358 (18%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W KK R E K +LL GPPG+GKTT+ H A+ Y ++E+NASD R+ I+ +
Sbjct: 45 WAKK-REKEVAEAKAVLLAGPPGIGKTTVVHALAREIRYELIELNASDIRTGERIKLVVG 103
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
++ +S+ K ++ DE+DG + + +G +E I+++V TAK
Sbjct: 104 RGLKESSLFG-YEGKLVLFDEVDGLHVKEDEGGLEAIVEIV------ETAKV-------- 148
Query: 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477
P++ N+ Y P R LR I+ V + S VV L+ IC
Sbjct: 149 ----------------PIVMTANNPYDPKFRPLRDISLVVNLKRLSEEEVVEVLRRICTA 192
Query: 478 ESMKTSSIALTTLAEYTECDIRSCLNTLQ-FLDKKKEILNVMDIGSQVVGRKDMSRSAFD 536
E K AL ++A+ + D+R+ +N LQ +L ++ L V DI + VG ++ S F+
Sbjct: 193 EGAKCEEEALRSIAKSSLGDLRAAINDLQMYLSGGRKTLTVDDI--KRVGERNPQLSMFE 250
Query: 537 IWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDP 596
+ +++ R R +VS + + E FL +L E + P
Sbjct: 251 VLDRVYRARWFDEAR-AVSFNPSFDWEQYFLWAL---------------ETV-------P 287
Query: 597 VMLKTVK----CLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQ-KPNL 649
V+ K V+ D L +D+ I R Q+ L Y LA+ VSQ++ KP L
Sbjct: 288 VVYKDVETAAAAYDRLSKADMFLGRIKRMQEWELLPYALELALGG---VSQVKNKPRL 342
>sp|P35600|RFC1_DROME Replication factor C subunit 1 OS=Drosophila melanogaster GN=Gnf1
PE=1 SV=2
Length = 986
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 137/319 (42%), Gaps = 59/319 (18%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS--------SSTIENKILDVVQM 363
K LL GPPG+GKTT A + K G+ VE NASD RS S+ + NK L
Sbjct: 481 KAALLSGPPGIGKTTTATLVVKELGFDAVEFNASDTRSKRLLKDEVSTLLSNKSLSGYFT 540
Query: 364 NSVMADSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISK 422
A SR L++DE+DG G + +G ++ ++ ++
Sbjct: 541 GQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALI------------------------ 576
Query: 423 KKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKT 482
K +S+ P+IC+CND P +RSL F +P + ++ ++ IC E +K
Sbjct: 577 ----KDSSI--PIICMCNDRNHPKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKI 630
Query: 483 SSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIF 542
S + + T DIR +N + L K+ + Q V KD+ +++ +++F
Sbjct: 631 SPAKVEEIIAATNNDIRQSINHIALLSAKE---DASQKSGQQVATKDLKLGPWEVVRKVF 687
Query: 543 QKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQL---QYHDPVML 599
+ K + S + S++ F H DY + + +N LQ+ V+
Sbjct: 688 TADEHKHM--SFADKSDL-----FFH-------DYSLAPLFVQQNYLQVLPQGNKKDVLA 733
Query: 600 KTVKCLDCLGNSDLMHQYI 618
K D L DL+ + I
Sbjct: 734 KVAATADALSLGDLVEKRI 752
>sp|Q2NH88|RFCL_METST Replication factor C large subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcL PE=3 SV=1
Length = 534
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 120/252 (47%), Gaps = 42/252 (16%)
Query: 289 NSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDR 348
N+ +K + W K S G P QK LLL GPPG+GKTT+AH+ K +EVNASD R
Sbjct: 18 NAKAKAQIEVWANKW-SKGVP-QKPLLLMGPPGIGKTTIAHLVGKEYFSETIEVNASDKR 75
Query: 349 SSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTA 407
S I++ I + Q S+ S K L++DE+DG G D G + + + +
Sbjct: 76 SYDIIKSSIGEAAQTRSLF-HSGYKLLIMDEVDGISGRDDSGGARAVNETIKNSK----- 129
Query: 408 KENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRV 467
+P+I + ND Y+ L S++ + F + + +
Sbjct: 130 -------------------------QPIILMANDAYSKRLTSIKPKCQGIKFTKVHTNSI 164
Query: 468 VSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL---DKKKEILNVMDIGSQV 524
++LK IC E ++ S AL TL++ + D+RS + +L+ + DKK + V
Sbjct: 165 NAQLKRICAREDIEYDSEALYTLSKESNGDLRSAITSLEAIVDNDKK-----ITKDSLSV 219
Query: 525 VGRKDMSRSAFD 536
+ +KD ++ FD
Sbjct: 220 IAKKDGEQNIFD 231
>sp|Q8Q084|RFCL_METMA Replication factor C large subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcL PE=3 SV=1
Length = 610
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 119/267 (44%), Gaps = 38/267 (14%)
Query: 290 SNSKGIQD--SWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347
N K +QD W ++ +S G PE++ ++L GP G+GKT+ AH A + V+E+NASD
Sbjct: 26 GNRKAVQDLRKWAEEWQS-GIPEKRAVILYGPAGIGKTSSAHALAGDMEWEVIELNASDQ 84
Query: 348 RSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTA 407
R++ IE MN+ R +++DE D G +A+R A
Sbjct: 85 RTAGVIEKIAGSAASMNTFFGGKR--LIILDEADNLHG-------------TADRGGMRA 129
Query: 408 KENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRV 467
+ K S L+P+I I ND+Y ++R I F +
Sbjct: 130 ISGIIK----------------STLQPIILIANDIYG-LTPTVRNICLEIKFGSVQSRSM 172
Query: 468 VSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGR 527
V LK +C +E + S A+ +AE D RS +N LQ K+ L DI + GR
Sbjct: 173 VPALKKVCESEGVSCSQEAVLQIAENAGGDFRSAINDLQAAANGKKALEAEDIST--AGR 230
Query: 528 KDMSRSAFDIWKEIFQKRKTKRLRNSV 554
D+ + F ++IF+ KR S
Sbjct: 231 -DVKENIFKAMQKIFKSTDCKRALESA 256
>sp|Q8TPU4|RFCL_METAC Replication factor C large subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcL
PE=3 SV=1
Length = 607
Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 121/264 (45%), Gaps = 42/264 (15%)
Query: 290 SNSKGIQD--SWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347
N K ++D +W ++ +S PE + ++L GP G+GKT+ AH A+ + V+E+NASD
Sbjct: 26 GNKKAVRDFRAWAEEWQSR-IPETRAVILYGPAGIGKTSSAHALARDMDWDVIELNASDQ 84
Query: 348 RSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTA 407
R++ IE MN++ R +++DE D G +A+R A
Sbjct: 85 RTAGVIEKIAGSAASMNTLFGSKR--LIILDEADNIHG-------------TADRGGMRA 129
Query: 408 KENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA--PALRSLRQIAKVHVFIQPSVS 465
+ K L+P++ I ND+Y P +R+L K F
Sbjct: 130 ISGIIK----------------GTLQPIVLIANDIYGLTPTIRNLCLEIK---FGSVQSR 170
Query: 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVV 525
+V LK +C E + S AL +AE D RS +N LQ KE L V DIG+
Sbjct: 171 SMVPALKKVCGAEGVYCSQEALLQIAENAGGDFRSAINDLQAAASGKEKLEVEDIGT--A 228
Query: 526 GRKDMSRSAFDIWKEIFQKRKTKR 549
GR D+ + F ++IF+ K+
Sbjct: 229 GR-DVKENIFKAMQKIFKSTDCKK 251
>sp|A9A6N2|RFCL_METM6 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcL PE=3 SV=1
Length = 484
Score = 99.8 bits (247), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 138/333 (41%), Gaps = 71/333 (21%)
Query: 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMAD 369
+QK +LL GPPG GKTTLA+ AK Y V+E+NASD R+ I + S+
Sbjct: 38 KQKPILLAGPPGSGKTTLAYAIAKDYAYDVIELNASDKRNKDVISQVVGTAATSKSITG- 96
Query: 370 SRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428
R +V+DE+DG G D +G V I+K++ EN
Sbjct: 97 -RRTLIVLDEVDGLSGNDDRGGVAEIIKVLK-------TAEN------------------ 130
Query: 429 ASLLRPVICICNDLYAPALRSLR------QIAKVHVFIQPSVSRVVSRLKHICNNESMKT 482
PVI ND+Y PAL +LR + VH P V L+ I E +
Sbjct: 131 -----PVILTANDVYKPALMTLRNNVNLINVGSVHTNSIPPV------LRKIALKEGFEI 179
Query: 483 SSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIF 542
+ T+A + D+R+ +N LQ L L V D ++ + +D +S FD + I
Sbjct: 180 DEKVIKTIASHAGGDLRAAINDLQSLATGGS-LEVED--AKELPDRDSEKSIFDAMRIIM 236
Query: 543 QKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQ--LQYHDPVMLK 600
KT + S++ +V E + IS EN+ + L+Y D
Sbjct: 237 ---KTTHYDIATSATRDVKEELGTIEEWIS-------------ENLPKEYLKYKD----- 275
Query: 601 TVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPL 633
D L SD+ + R Q L+ Y L
Sbjct: 276 LANGYDYLSKSDVFLGRVFRRQYFGLWRYASAL 308
>sp|Q4JAB1|RFCL_SULAC Replication factor C large subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcL PE=3 SV=1
Length = 437
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 50/288 (17%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G P K +LL GPPG+GKTTLA A+ ++E+NASD R+ I++ + + ++
Sbjct: 37 GEPTAKAVLLYGPPGVGKTTLAEALARDYKLELLEMNASDSRNLRDIKD-VAERASISGS 95
Query: 367 MADSRPKCLVIDEIDGALGDG-KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
+ + K +++DEIDG GA+ IL+++ +
Sbjct: 96 LFGIKGKIILLDEIDGIYSRADAGAIPAILELIEKTK----------------------- 132
Query: 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
PVI ND + P+LRSLR K+ + + LK IC E +
Sbjct: 133 -------YPVILTANDPWDPSLRSLRNAVKMIELKRLGKYPLKRLLKRICEKEKIVCIDE 185
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
AL + E +E D R C+N LQ + + + +D ++V RKD F+ +++F +
Sbjct: 186 ALDHIIEQSEGDARYCINMLQGIAEGYGKVT-LDNVKELVRRKDRELDPFETLRDVFWAK 244
Query: 546 KTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQY 593
+ +N+V++S + DY+++ ENI LQY
Sbjct: 245 YYWQAKNAVTNS----------------QVDYELLMRWFDENI-PLQY 275
>sp|O60182|RFC1_SCHPO Replication factor C subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc1 PE=1 SV=1
Length = 934
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 51/232 (21%)
Query: 293 KGIQDSWHKKTRST----GPPE---QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS 345
K +QD +HK +S GP K +LL GPPG+GKTT AH+ AK GY V+E+NAS
Sbjct: 385 KWLQD-YHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGYDVLELNAS 443
Query: 346 DDRSSSTIENKILDVVQMNSV------------MADSRPKCLVIDEIDGALGDGKGAVEV 393
D RS ++ ++ V S+ MA SR L++DEIDG +G V
Sbjct: 444 DTRSKRLLDEQLFGVTDSQSLAGYFGTKANPVDMAKSR-LVLIMDEIDGMSSGDRGGVGQ 502
Query: 394 ILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQI 453
+ ++ K S++ P+ICICND P LR L +
Sbjct: 503 LNMII-----------------------------KKSMI-PIICICNDRAHPKLRPLDRT 532
Query: 454 AKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTL 505
F +P + + SR+ I E +K S A+ L + T+ D+R +N L
Sbjct: 533 TFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLL 584
>sp|A6VIW1|RFCL_METM7 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcL PE=3 SV=1
Length = 482
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 141/333 (42%), Gaps = 71/333 (21%)
Query: 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMAD 369
+QK +LL GPPG GKTTLA+ AK + V+E+NASD R+ I ++++ + +
Sbjct: 38 KQKPILLAGPPGSGKTTLAYAIAKDYAFDVIELNASDKRNKDVI-SQVVGTAATSKSLTG 96
Query: 370 SRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428
R +V+DE+DG G D +G V I+K++ EN
Sbjct: 97 KRT-LIVLDEVDGLSGNDDRGGVAEIIKVLK-------TAEN------------------ 130
Query: 429 ASLLRPVICICNDLYAPALRSLR------QIAKVHVFIQPSVSRVVSRLKHICNNESMKT 482
PVI ND+Y PAL +LR + VH P V L+ I E +
Sbjct: 131 -----PVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPV------LRKIALKEGFEI 179
Query: 483 SSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIF 542
+ T+A + D+R+ +N LQ L I V D ++ + +D +S FD + I
Sbjct: 180 DEKVIKTIASHAGGDLRAAINDLQSLATGGSI-EVED--AKELPDRDSEKSIFDAMRIIM 236
Query: 543 QKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQ--LQYHDPVMLK 600
KT + S++ +V E + IS EN+ + L+Y D
Sbjct: 237 ---KTTHYDIATSATRDVKEELGTIEEWIS-------------ENLPKEYLKYKD----- 275
Query: 601 TVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPL 633
D L SD+ + R Q L+ Y L
Sbjct: 276 LANGYDYLSKSDVFLGRVFRRQYFGLWRYASAL 308
>sp|Q9YBS5|RFCL_AERPE Replication factor C large subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcL PE=3 SV=2
Length = 479
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/420 (23%), Positives = 176/420 (41%), Gaps = 69/420 (16%)
Query: 291 NSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS 350
+K I W K P+++ LL GPPG+GKT+L A ++E+NASD R
Sbjct: 29 QAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSLVEAIASEFNLEMIELNASDYRRR 88
Query: 351 STIENKILDVVQMNSVMADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKE 409
S IE + + S+ R +++DE+DG + G +E +L ++ E
Sbjct: 89 SDIERIVGAASRKRSMF--KRGVVILLDEVDGINPREDAGGIEALLSVIK-------TTE 139
Query: 410 NVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVS 469
N P++ ND + LR LR+++ + F +++ +V+
Sbjct: 140 N-----------------------PIVMTANDPWKDFLRPLREVSLMVEFRPLTLTHIVA 176
Query: 470 RLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKD 529
L+ IC E ++ AL +AE +E D+RS +N LQ + + + + V GR+
Sbjct: 177 VLQRICEAERIECEREALRYIAERSEGDLRSAINDLQAVAEGYGRVTLTLAREIVRGRE- 235
Query: 530 MSRSAFDIWK---EIFQK-RKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIH 585
+ DIW+ ++F K R+ R +VS S DY+ + I+
Sbjct: 236 ---KSIDIWRTLNQVFYKPRQAWMARKAVSQSEK----------------DYEELIAWIN 276
Query: 586 ENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPL---AITVHRLVS 642
+NI + +Y +P L + D L + + L Y L + R+
Sbjct: 277 DNIPR-KYGEPSDL--FRAFDALARATVFLGRAKFGGNWELLSYVFDLMGPGVAYARMEG 333
Query: 643 QIQKPNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYIS-RHLSTESLVEDSISPLLHIL 701
++ K +P+ + M ++ + K+ ++ R L + V+ + P+LH +
Sbjct: 334 EVLKTRYSYPEKIR-----MMAQLRGVRETREKLAEVLAKRLLMSRRAVKTEVLPILHYI 388
>sp|A4FZL6|RFCL_METM5 Replication factor C large subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcL PE=3 SV=1
Length = 484
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 139/333 (41%), Gaps = 71/333 (21%)
Query: 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMAD 369
+QK +LL GPPG GKTTLAH AK + V+E+NASD R+ I + S+
Sbjct: 38 KQKPILLAGPPGSGKTTLAHAIAKDYAFDVIELNASDKRNKDVIAQVVGTAATSKSLTG- 96
Query: 370 SRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428
+ +V+DE+DG G D +G V I+K++ EN
Sbjct: 97 -KRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTA-------EN------------------ 130
Query: 429 ASLLRPVICICNDLYAPALRSLR------QIAKVHVFIQPSVSRVVSRLKHICNNESMKT 482
PVI ND+Y PAL +LR + VH P V L+ I E +
Sbjct: 131 -----PVILTANDVYKPALMTLRNNVNLINVGSVHTNSIPPV------LRKIALKEGFEI 179
Query: 483 SSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIF 542
+ T+A ++ D+R+ +N LQ L L V D ++ + +D +S FD + I
Sbjct: 180 DEKVIKTIASHSGGDLRAAINDLQSLATGGS-LEVED--AKELPDRDSEKSIFDAMRIIM 236
Query: 543 QKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQ--LQYHDPVMLK 600
KT + S++ +V + + IS EN+ + L+Y D
Sbjct: 237 ---KTTHYDIATSATRDVKEDLGTIQEWIS-------------ENLPKEYLRYKD----- 275
Query: 601 TVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPL 633
D L SD+ + + Q L+ Y L
Sbjct: 276 LAGGYDYLSKSDVFLGRVFKRQYFGLWRYASAL 308
>sp|A8AC24|RFCL_IGNH4 Replication factor C large subunit OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=rfcL PE=3 SV=1
Length = 476
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 148/343 (43%), Gaps = 51/343 (14%)
Query: 288 ENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347
+ +K + W KK S PPE++ LL GPPG+GKT+L +E+NASD
Sbjct: 20 DQEKAKEVLIPWIKKWLSGTPPEKRAALLWGPPGVGKTSLVEAICNEFNLEKIEMNASDF 79
Query: 348 RSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG-KGAVEVILKMVSAERKSNT 406
R IE ++ + + + +++DE+DG G +GAV IL+++ +
Sbjct: 80 RRKGDIE-RVAIAAATKKPLPPWKGRLILLDEVDGLSPRGDEGAVAAILELIKKTKN--- 135
Query: 407 AKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSR 466
P++ ND + LR +R+ + + F + ++
Sbjct: 136 ---------------------------PIVMTANDPWGTHLRPIREESLLVEFKRIPKTK 168
Query: 467 VVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVG 526
L IC E + A+ + E + D+R+ +N LQ + + + +D+ S ++
Sbjct: 169 AREFLLKICEKEGVYCEKEAVDYIIEKNKGDLRASINDLQSIAEAYGKVT-LDLASALLV 227
Query: 527 RKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHE 586
+D + +++ + +F + + + R +V+S+ DYD +F I E
Sbjct: 228 ERDRVLTPWEMLQSLFYSKYSWQARKAVTSTDL----------------DYDTLFLWIAE 271
Query: 587 NILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVY 629
N+ + DP L + ++ + +D+++ I RT L Y
Sbjct: 272 NVPKQYGDDPYDL--WRGMEAVSRADVIYGRIRRTMNWSLLPY 312
>sp|O26342|RFCL_METTH Replication factor C large subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcL PE=1 SV=1
Length = 479
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 146/338 (43%), Gaps = 62/338 (18%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W K ++ P QK LLL GPPG GKTTLAH+ K +E+NASD RS +
Sbjct: 28 WIKAWKAGKP--QKPLLLVGPPGTGKTTLAHIIGKEFS-DTLELNASDRRSQDALMRSAG 84
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
+ S+ + K +++DE+DG G + +G V+ I +++ R
Sbjct: 85 EASATRSLF-NHDLKLIILDEVDGIHGNEDRGGVQAINRIIKESR--------------- 128
Query: 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477
P++ ND Y+ L+S++ +V + S + + L+ IC
Sbjct: 129 ---------------HPMVLTANDPYSKRLQSIKPRCRVLNLRKVHTSSIAAALRRICRA 173
Query: 478 ESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVV--GRKDMSRSAF 535
E ++ L LA+ + D+RS +N L+ + + +E IG +++ G KD + + F
Sbjct: 174 EGIECPDDVLRELAKRSRGDLRSAINDLEAMAEGEE-----RIGEELLKMGEKDATSNLF 228
Query: 536 DIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHD 595
D + + + R ++R ++ D ++ + I EN+ + +Y
Sbjct: 229 DAVRAVLKSRDVSKVREAMRVDD-----------------DPTLVLEFIAENVPR-EYEK 270
Query: 596 PVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPL 633
P + + D L +D+ +RT+ + Y L
Sbjct: 271 PNEIS--RAYDMLSRADIFFGRAVRTRNYTYWRYASEL 306
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 199 WVDKYAPNSFTELLSDEQTNREVLLWLKQWDS 230
W +KY P SF E++ +++ E+ W+K W +
Sbjct: 3 WTEKYRPGSFDEVVGNQKVIAEIKEWIKAWKA 34
>sp|Q46AT6|RFCL_METBF Replication factor C large subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcL PE=3 SV=1
Length = 642
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 42/264 (15%)
Query: 290 SNSKGIQ--DSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347
N K +Q +W +K S G P+++ ++L GP G+GKT+ AH A+ + V+E+NASD
Sbjct: 21 GNKKAVQYLRTWAEKWLS-GIPDRRAVVLHGPAGVGKTSTAHALARDLDWEVIELNASDQ 79
Query: 348 RSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTA 407
R++ IE MN+ R +++DE D G +A+R A
Sbjct: 80 RTAGVIERVAGSAASMNTFFGGKR--LIILDEADNIHG-------------TADRGGMRA 124
Query: 408 KENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA--PALRSLRQIAKVHVFIQPSVS 465
+ K + L+P++ I ND+Y P +R+L K F
Sbjct: 125 IAGIIK----------------NTLQPIVLIANDIYGLTPTIRNLCLEIK---FGSVQSR 165
Query: 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVV 525
+V LK +C +E + S A+ +AE D+RS +N LQ ++ L V D+ +
Sbjct: 166 SMVPALKKVCESEDILCSPDAIQQIAEGAGGDLRSAINDLQAAATGRKTLEVEDLSTS-- 223
Query: 526 GRKDMSRSAFDIWKEIFQKRKTKR 549
GR D+ + F + IF+ K+
Sbjct: 224 GR-DVKENIFKAMQRIFKSTDCKK 246
>sp|C3NHF4|RFCL_SULIN Replication factor C large subunit OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rfcL PE=3 SV=1
Length = 405
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 124/283 (43%), Gaps = 49/283 (17%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G P K +LL GPPG+GKTTLA A ++E+NASD R I+ + + +
Sbjct: 36 GKPNAKAVLLHGPPGVGKTTLAEAVAHDYNLELLEMNASDSRKLQDIKG-VAEKASVYGS 94
Query: 367 MADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
+ +R K +++DE+DG + + GA++ IL+++ +
Sbjct: 95 IFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTK----------------------- 131
Query: 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
P+I ND + PALR LR K+ + + LK IC E +
Sbjct: 132 -------YPIIMTANDPWNPALRELRNKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDE 184
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
AL + + +E D R +N LQ + + + +D+ + RK+ F+ ++IF R
Sbjct: 185 ALNYIIDTSEGDTRYAINMLQGIGEGYGKV-TLDLVEAMARRKERELDPFETLRDIFWAR 243
Query: 546 KTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENI 588
+ +N+ +S+ + DYD++ I ENI
Sbjct: 244 YAWQAKNAATSA----------------QIDYDMLIRWISENI 270
>sp|C3NE95|RFCL_SULIY Replication factor C large subunit OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 124/283 (43%), Gaps = 49/283 (17%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G P K +LL GPPG+GKTTLA A ++E+NASD R I+ + + +
Sbjct: 36 GKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKG-VAEKASVYGS 94
Query: 367 MADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
+ +R K +++DE+DG + + GA++ IL+++ +
Sbjct: 95 IFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTK----------------------- 131
Query: 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
P+I ND + PALR LR K+ + + LK IC E +
Sbjct: 132 -------YPIIMTANDPWNPALRELRNKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDE 184
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
AL + + +E D R +N LQ + + + +D+ + RK+ F+ ++IF R
Sbjct: 185 ALNYIIDTSEGDARYAINMLQGIGEGYGKV-TLDLVEAMARRKERELDPFETLRDIFWAR 243
Query: 546 KTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENI 588
+ +N+ +S+ + DYD++ I ENI
Sbjct: 244 YAWQAKNAATSA----------------QIDYDMLIRWISENI 270
>sp|C3MQ13|RFCL_SULIL Replication factor C large subunit OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 124/283 (43%), Gaps = 49/283 (17%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G P K +LL GPPG+GKTTLA A ++E+NASD R I+ + + +
Sbjct: 36 GKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKG-VAEKASVYGS 94
Query: 367 MADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
+ +R K +++DE+DG + + GA++ IL+++ +
Sbjct: 95 IFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTK----------------------- 131
Query: 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
P+I ND + PALR LR K+ + + LK IC E +
Sbjct: 132 -------YPIIMTANDPWNPALRELRNKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDE 184
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
AL + + +E D R +N LQ + + + +D+ + RK+ F+ ++IF R
Sbjct: 185 ALNYIIDTSEGDARYAINMLQGIGEGYGKV-TLDLVEAMARRKERELDPFETLRDIFWAR 243
Query: 546 KTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENI 588
+ +N+ +S+ + DYD++ I ENI
Sbjct: 244 YAWQAKNAATSA----------------QIDYDMLIRWISENI 270
>sp|C4KHA7|RFCL_SULIK Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=rfcL PE=3 SV=1
Length = 405
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 49/283 (17%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G P K +LL GPPG+GKTTLA A ++E+NASD R I++ + + +
Sbjct: 36 GKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKS-VAEKASVYGS 94
Query: 367 MADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
+ +R K +++DE+DG + + GA++ IL+++ +
Sbjct: 95 IFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTK----------------------- 131
Query: 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
P+I ND + PALR LR K+ + + LK IC E +
Sbjct: 132 -------YPIIMTANDPWNPALRELRNKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDE 184
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
AL + + +E D R +N LQ + + + +D+ + RK+ F+ ++IF R
Sbjct: 185 ALNYIIDTSEGDARYAINMLQGIGEGYGKV-TLDLVEAMARRKERELDPFETLRDIFWAR 243
Query: 546 KTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENI 588
+ +N+ +S+ + DYD++ I ENI
Sbjct: 244 YAWQAKNAATSA----------------QIDYDMLIRWISENI 270
>sp|Q2FQR4|RFCL_METHJ Replication factor C large subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcL PE=3 SV=1
Length = 483
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 133/334 (39%), Gaps = 64/334 (19%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W + PP L+L G PG+GKT+ A A + VVE+NASD R+ + IE
Sbjct: 28 WATRWTVESPP----LILYGKPGIGKTSSAWALAHDMNWEVVELNASDQRTKAVIEKVAG 83
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGALGDG-KGAVEVILKMVSAERKSNTAKENVAKEDQP 417
S+ +R K +++DE D G+ +G I +++ R+
Sbjct: 84 GSASTGSLTGAAR-KLIILDEADNLQGNADRGGARAIAEVIRQARQ-------------- 128
Query: 418 EKISKKKGCKKASLLRPVICICNDLYA--PALRSLRQIAKVHVFIQPSVSRVVSRLKHIC 475
P+I I NDLY +R+L KV P+ S +V RL+ IC
Sbjct: 129 ----------------PLILIANDLYGLDGTIRNL--CTKVQFKALPAKS-LVPRLREIC 169
Query: 476 NNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAF 535
+ E + S+ ALT +AE + DIRS + +L IG VG D+S SA
Sbjct: 170 SREQLTCSAQALTDIAEQSGGDIRSAVT----------MLYASAIGKDTVGEDDVSISAK 219
Query: 536 DIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHD 595
D IF V S ++S D D I I N+ L
Sbjct: 220 DSRASIFDLVAATLGYRQVPSLLDMSMSVDETP---------DTILQWIEGNLGVL---- 266
Query: 596 PVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVY 629
P KT + L +D+ Y TQ L+ Y
Sbjct: 267 PDRKKTAQAYAALSRADMYLGYTFLTQYYTLWRY 300
>sp|Q58294|RFCL_METJA Replication factor C large subunit OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rfcL PE=1 SV=1
Length = 516
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 147/346 (42%), Gaps = 58/346 (16%)
Query: 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSR 371
K +LL GPPG GKTTLA+ A G+ V+E+NASD R+SS I+ + +S+ +
Sbjct: 40 KPILLVGPPGCGKTTLAYALANDYGFEVIELNASDKRNSSAIKKVVGHAATSSSIFG--K 97
Query: 372 PKCLVIDEIDGALG--DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKA 429
+V+DE+DG G D G E+I K KKA
Sbjct: 98 KFLIVLDEVDGISGKEDAGGVSELI-----------------------------KVIKKA 128
Query: 430 SLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTT 489
P+I ND YAP++RSL +V + V LK I E + L
Sbjct: 129 K--NPIILTANDAYAPSIRSLLPYVEVIQLNPVHTNSVYKVLKKIAEKEGLDVDDKTLKM 186
Query: 490 LAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKR 549
+A+++ D+RS +N L+ L ++ + ++ RK + + FD + I KT
Sbjct: 187 IAQHSAGDLRSAINDLEALALSGDL--SYEAAQKLPDRKREA-NIFDALRVIL---KTTH 240
Query: 550 LRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLG 609
+ ++ NV DV+ + I EN+ + +Y P + + + L
Sbjct: 241 YGIATTALMNVDE-------------TPDVVIEWIAENVPK-EYEKPE--EVARAFEYLS 284
Query: 610 NSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSY 655
+D +MR Q + Y L +T +S+ +K P SY
Sbjct: 285 KADRYLGRVMRRQNYSFWKYATTL-MTAGVALSKDEKYRKWTPYSY 329
>sp|P35251|RFC1_HUMAN Replication factor C subunit 1 OS=Homo sapiens GN=RFC1 PE=1 SV=4
Length = 1148
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 142/363 (39%), Gaps = 101/363 (27%)
Query: 194 VHEQLWVDKYAPNSFTELLS---DEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRR 250
V LWVDKY P S ++ D+ ++L WL+ W +S+SE+ ++
Sbjct: 581 VENLLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQ--------KSSSED-----KK 627
Query: 251 HSTISQNKKQNDSSFTRKNRGNRWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPE 310
H+ F+ K+ G+ +
Sbjct: 628 HAA-------KFGKFSGKDDGSSF------------------------------------ 644
Query: 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA-- 368
K LL GPPG+GKTT A + + GY VE+NASD RS S+++ + + + S+
Sbjct: 645 -KAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSIKGFY 703
Query: 369 -------DSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKI 420
S L++DE+DG G + +G ++ ++ ++ + KI
Sbjct: 704 SNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLI-----------------KHTKI 746
Query: 421 SKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESM 480
P+IC+CND P +RSL F +P V ++ + I E +
Sbjct: 747 -------------PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGL 793
Query: 481 KTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQV-VGRKDMSRSAFDIWK 539
K A+ + DIR L+ L + + L + +KD+ FD+ +
Sbjct: 794 KIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDIKMGPFDVAR 853
Query: 540 EIF 542
++F
Sbjct: 854 KVF 856
>sp|C3MVD2|RFCL_SULIM Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=rfcL PE=3 SV=1
Length = 405
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 49/283 (17%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G P K +LL GPPG+GKTTLA A ++E+NASD R I++ + + +
Sbjct: 36 GKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKS-VAEKASVYGS 94
Query: 367 MADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
+ +R K +++DE+DG + + GA++ IL+++ +
Sbjct: 95 IFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTK----------------------- 131
Query: 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
P+I ND + PALR LR K+ + + LK IC E +
Sbjct: 132 -------YPLIMTANDPWNPALRELRNKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDE 184
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
AL + + +E D R +N LQ + + + +D+ + RK+ F+ ++IF R
Sbjct: 185 ALNYIIDTSEGDARYAINMLQGIGEGYGKV-TLDLVEAMARRKERELDPFETLRDIFWAR 243
Query: 546 KTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENI 588
+ +N+ +S+ + DYD++ I ENI
Sbjct: 244 YAWQAKNAATSA----------------QIDYDMLIRWISENI 270
>sp|C3N5N1|RFCL_SULIA Replication factor C large subunit OS=Sulfolobus islandicus (strain
M.16.27) GN=rfcL PE=3 SV=1
Length = 405
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 125/283 (44%), Gaps = 49/283 (17%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G P K +LL GPPG+GKTTLA A ++E+NASD R I++ + + +
Sbjct: 36 GKPNAKAVLLHGPPGVGKTTLAEALAHDYNLELLEMNASDSRKLQDIKS-VAEKASVYGS 94
Query: 367 MADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
+ +R K +++DE+DG + + GA++ IL+++ +
Sbjct: 95 IFGTRGKLILLDEVDGINVREDTGAIQGILELIEKTK----------------------- 131
Query: 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
P+I ND + PALR LR K+ + + LK IC E +
Sbjct: 132 -------YPLIMTANDPWNPALRELRNKTKMVGLNKLGKYPLRRLLKKICQAEKIICDDE 184
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545
AL + + +E D R +N LQ + + + +D+ + RK+ F+ ++IF R
Sbjct: 185 ALNYIIDTSEGDARYAINMLQGIGEGYGKV-TLDLVEAMARRKERELDPFETLRDIFWAR 243
Query: 546 KTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENI 588
+ +N+ +S+ + DYD++ I ENI
Sbjct: 244 YAWQAKNAATSA----------------QIDYDMLIRWISENI 270
>sp|A3DNV8|RFCL_STAMF Replication factor C large subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcL PE=3 SV=1
Length = 423
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 38/211 (18%)
Query: 297 DSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENK 356
+SW K G P +K LL GP G GKT+L AA G +VE+NASD R IE
Sbjct: 34 ESWLK-----GKPSKKAALLYGPAGCGKTSLVEAAANEYGLEIVEMNASDFRRRQDIERI 88
Query: 357 ILDVVQMNSVMADSRPKCLVIDEIDGALGDG-KGAVEVILKMVSAERKSNTAKENVAKED 415
M S+ A R K +++DE+DG G +GA++ IL ++ R
Sbjct: 89 AKTAAFMRSLFA--RGKIILLDEVDGISGTADRGAIDAILHLLEITRY------------ 134
Query: 416 QPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHIC 475
PV+ N+ + L+ LR + + F + S V+ LK IC
Sbjct: 135 ------------------PVVMTANNPWDQKLKPLRDASLMIAFKRLSERDVIIVLKRIC 176
Query: 476 NNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506
E ++ AL +A +E D+RS +N LQ
Sbjct: 177 QLEKLECEDAALREIARRSEGDLRSAINDLQ 207
>sp|Q975D4|RFCL_SULTO Replication factor C large subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcL PE=3
SV=2
Length = 440
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 133/299 (44%), Gaps = 57/299 (19%)
Query: 297 DSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENK 356
+SW K G P K +LL GPPG+GKTTLA A+ + E+NASD R+ + I
Sbjct: 32 ESWLK-----GKPNYKAVLLYGPPGVGKTTLAEALARDYKLELFEMNASDSRNLNDIRT- 85
Query: 357 ILDVVQMNSVMADSRPKCLVIDEIDG--ALGDGKGAVEVILKMVSAERKSNTAKENVAKE 414
+ + + + + K +++DE+DG A D GA++ IL++++ +
Sbjct: 86 MAERASITGTIFGIKGKLILLDEVDGLNARADA-GAIDAILELINKTK------------ 132
Query: 415 DQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHI 474
P+I ND + P+LR LR K+ + + + LK I
Sbjct: 133 ------------------YPIILTANDPWDPSLRPLRNAVKMIELKRLTKYPLKRILKKI 174
Query: 475 CNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSA 534
C E + AL + E +E D R +N LQ + + + +D+ +V RKD
Sbjct: 175 CEAEKITCEDEALDFIIEQSEGDARYAINMLQGVAEGYGRVT-LDMAKNLVRRKDRELDP 233
Query: 535 FDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQY 593
F+ + +F + + +++V+ + + DY+++ + ENI LQY
Sbjct: 234 FEALRGVFWAKYYWQAKSAVTDT----------------QIDYELLMRWLDENI-PLQY 275
>sp|Q6M0E9|RFCL_METMP Replication factor C large subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcL PE=3 SV=1
Length = 486
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 139/336 (41%), Gaps = 71/336 (21%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G QK +LL GPPG GKTTLA+ A + V+E+NASD R+ I + S+
Sbjct: 35 GGQNQKPILLAGPPGSGKTTLAYAIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSL 94
Query: 367 MADSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
R +V+DE+DG G D +G V I+K++ EN
Sbjct: 95 TG--RRTLIVLDEVDGLSGNDDRGGVAEIIKVLK-------TAEN--------------- 130
Query: 426 CKKASLLRPVICICNDLYAPALRSLR------QIAKVHVFIQPSVSRVVSRLKHICNNES 479
PVI ND+Y PAL +LR + VH P V L+ I E
Sbjct: 131 --------PVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPV------LRRIALKEG 176
Query: 480 MKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWK 539
+ + +A ++ D+R+ +N LQ L I + D ++ + +D +S FD +
Sbjct: 177 FEIDEKIIKMIASHSGGDLRAAINDLQSLATGGSI-EIED--AKELPDRDSEKSIFDAMR 233
Query: 540 EIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQ--LQYHDPV 597
I KT + S++ +V + D I + I EN+ + L+Y D
Sbjct: 234 IIM---KTTHYDIATSATRDV-------------KEDIGTIEEWISENLPKEYLKYKD-- 275
Query: 598 MLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPL 633
+ D L SD+ + R Q L+ Y L
Sbjct: 276 ---LAEGYDYLSKSDVFLGRVYRRQYFGLWRYASAL 308
>sp|O29072|RFCL_ARCFU Replication factor C large subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcL PE=1 SV=1
Length = 479
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 158/372 (42%), Gaps = 77/372 (20%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W K + P LLL GPPG+GKT+LA A G+ VE+NASD RS IE +I+
Sbjct: 28 WAKSWKRGSKP----LLLAGPPGVGKTSLALALANTMGWEAVELNASDQRSWRVIE-RIV 82
Query: 359 DVVQMNSVMAD---------SRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKE 409
N ++D + K +++DE+D KE
Sbjct: 83 GEGAFNETISDEGEFLSSRIGKLKLIILDEVDNI----------------------HKKE 120
Query: 410 NVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRV 467
+V E ++ K+K + P+I I ND Y +P LR+L ++ + V+RV
Sbjct: 121 DVGGEAALIRLIKRKPAQ------PLILIANDPYKLSPELRNLCEMINFKRLTKQQVARV 174
Query: 468 VSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGR 527
+ R I E +K L +AE D+R+ +N Q L + KE L D+ + +
Sbjct: 175 LER---IALKEGIKVDKSVLLKIAENAGGDLRAAINDFQALAEGKEELKPEDV---FLTK 228
Query: 528 KDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHEN 587
+ + F + + IF KTK + V NE +++ + DVI + EN
Sbjct: 229 RTQEKDIFRVMQMIF---KTK--------NPAVYNE-----AMLLDESPEDVI-HWVDEN 271
Query: 588 ILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKP 647
L L+Y ++ V + L +D+ + R Q L+ Y L + +Q+
Sbjct: 272 -LPLEYSG---VELVNAYEALSRADIFLGRVRRRQFYRLWKYASYL------MTVGVQQM 321
Query: 648 NLEWPKSYQRYR 659
E K + RYR
Sbjct: 322 KEEPKKGFTRYR 333
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQW 228
LWV+KY P + E+++D+ V+ W K W
Sbjct: 2 LWVEKYRPKTLEEVVADKSIITRVIKWAKSW 32
>sp|Q12TX1|RFCL_METBU Replication factor C large subunit OS=Methanococcoides burtonii
(strain DSM 6242) GN=rfcL PE=3 SV=1
Length = 497
Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 111/241 (46%), Gaps = 39/241 (16%)
Query: 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNS 365
+G PE++ ++L GP G+GKT+ AH A+ + +E+NASD R++ IE +M+S
Sbjct: 38 SGTPEKRAIILHGPAGVGKTSAAHALARDLDWETIELNASDQRTAGVIERVAGSASKMSS 97
Query: 366 VMADSRPKCLVIDEIDGALGDG-KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKK 424
+ + + +++DE D G+ +G I ++ NT DQ
Sbjct: 98 LTGTTAKRLIILDEADNIHGNADRGGARAIGGII-----KNT--------DQ-------- 136
Query: 425 GCKKASLLRPVICICNDLYA--PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKT 482
P++ I NDLY P++RSL K F ++ +K IC E +
Sbjct: 137 ---------PIVLIANDLYGLTPSVRSLCIELK---FNSVQGRSMIPAMKRICVEEKIMC 184
Query: 483 SSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIF 542
L LAE D+RS + LQ + ++ +++ DI + +D S F + +IF
Sbjct: 185 GVGVLEKLAESAGGDLRSAIKDLQAVATGRDEIHIEDIATS---ERDTKESIFKVLGKIF 241
Query: 543 Q 543
+
Sbjct: 242 K 242
>sp|Q9UXF6|RFCL_SULSO Replication factor C large subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcL
PE=1 SV=1
Length = 405
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 126/285 (44%), Gaps = 53/285 (18%)
Query: 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV 366
G K +LL GPPG+GKT LA A + ++E+NASD R I++ I + +
Sbjct: 36 GNSNVKAVLLHGPPGVGKTVLAEALAHDYNFELLEMNASDSRKLQDIKS-IAEKAAVYGS 94
Query: 367 MADSRPKCLVIDEIDGA-LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425
+ ++ K +++DE+DG + + GA++ IL+++ +
Sbjct: 95 IFGTKGKLILLDEVDGINVREDTGAIQGILELIEKTK----------------------- 131
Query: 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485
P+I ND + P LR LR AK+ + + LK IC E +
Sbjct: 132 -------YPIIMTANDPWNPGLRELRNKAKMIELSKLGKYPLRRILKKICQAEKIICDDE 184
Query: 486 ALTTLAEYTECDIRSCLNTLQFLDK--KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543
AL + + +E D R +N LQ + + K LN+++ + RK+ F+ ++IF
Sbjct: 185 ALNYIIDSSEGDARYAINILQGIGEGYGKVTLNLVE---SLAKRKERELDPFETLRDIFW 241
Query: 544 KRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENI 588
R + +N+ +S+ + DYD++ I ENI
Sbjct: 242 ARYAWQAKNAATSA----------------QIDYDMLIRWISENI 270
>sp|A2SQR6|RFCL_METLZ Replication factor C large subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcL PE=3 SV=1
Length = 476
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 141/331 (42%), Gaps = 58/331 (17%)
Query: 299 WHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL 358
W K T P+ + LL G PG+GKT+ A A+ + V+E+NASD R+ + IE
Sbjct: 28 WAK----TWTPDSRPLLFTGKPGIGKTSAALALARDMDWEVLELNASDARTKTIIERVAG 83
Query: 359 DVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPE 418
+ S+ R K ++IDE+D G+ A+R A ++ KE +
Sbjct: 84 NSSTTTSLFGAGR-KLIIIDEVDNLEGN-------------ADRGGARAIADILKEAK-- 127
Query: 419 KISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNE 478
+P++ I ND Y + S+R++ F VS + R+K IC E
Sbjct: 128 --------------QPIVLIANDAYGVS-DSIRRLCDPVPFRAIGVSTLQKRMKEICRFE 172
Query: 479 SMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIW 538
+ AL+ +AE + D+R+ +N L K ++V DI + +KD + FD+
Sbjct: 173 DIACGEDALSAIAESSAGDMRTAVNMLFGSSTGKTSISVGDINT---AQKDERATIFDLV 229
Query: 539 KEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVM 598
+F + L+ +S E D D + I E+I + HDP
Sbjct: 230 GGVFAGAPDRELQ-------KLSFECD---------EKPDSVMQWIEESIPLM--HDPK- 270
Query: 599 LKTVKCLDCLGNSDLMHQYIMRTQQMPLYVY 629
+ ++ + +D+ MR Q L+ Y
Sbjct: 271 -RRIRAYGRISRADVYLGRTMRRQYFTLWRY 300
>sp|P35601|RFC1_MOUSE Replication factor C subunit 1 OS=Mus musculus GN=Rfc1 PE=1 SV=2
Length = 1131
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 141/360 (39%), Gaps = 103/360 (28%)
Query: 198 LWVDKYAPNSFTELLS---DEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTI 254
LWVDKY P S ++ D+ ++L WL+ W +S+ EE A +
Sbjct: 569 LWVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWH--------KSSPEEKKHAAKFGKLA 620
Query: 255 SQNKKQNDSSFTRKNRGNRWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVL 314
S K + SSF K
Sbjct: 621 S---KDDGSSF----------------------------------------------KAA 631
Query: 315 LLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV----MADS 370
LL GPPG+GKTT A + + GY VE+NASD RS ++++ + + + S+ + +
Sbjct: 632 LLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGA 691
Query: 371 RPK-----CLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKK 424
P L++DE+DG G + +G ++ ++ ++ + KI
Sbjct: 692 APSVSARHALIMDEVDGMAGNEDRGGIQELIGLI-----------------KHTKI---- 730
Query: 425 GCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSS 484
P+IC+CND P +RSL F +P V ++ S + I E +K
Sbjct: 731 ---------PIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPP 781
Query: 485 IALTTLAEYTECDIRSCLNTLQFLDKKKEILNV--MDIGSQVVGRKDMSRSAFDIWKEIF 542
A+ + D+R L+ L + + L SQ +KD+ FD+ +++F
Sbjct: 782 PAMNEIILGANQDVRQVLHNLSMWCAQSKALTYDQAKADSQRA-KKDIRLGPFDVTRKVF 840
>sp|Q9HPI4|RFCL_HALSA Replication factor C large subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcL PE=3
SV=2
Length = 471
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 39/270 (14%)
Query: 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNS 365
T P ++ +++ G PG+GKT+ AH A G+ VVE+NASD R++ +E + + +
Sbjct: 32 TWPDHREAVVVHGSPGIGKTSAAHALANDAGWDVVELNASDQRTADVVERVAGEAARSGT 91
Query: 366 VMADSRPKCLV-IDEIDGALGD-GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKK 423
+ S + LV +DE D G+ +G I ++V +D P+
Sbjct: 92 LTGGSGGRKLVLLDEADNLHGNIDRGGSAAITRLV---------------DDAPQ----- 131
Query: 424 KGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTS 483
P++ + N+ Y + SLR + F S +V L+ +C E +
Sbjct: 132 ----------PIVLVANEYYEMS-SSLRSACREIEFRDVSKRSIVPVLRDVCRREDVTYE 180
Query: 484 SIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543
AL +AE D+RS +N LQ L ++ L D+ V+G +D + FD ++
Sbjct: 181 EDALAAIAEQNAGDLRSAVNDLQALAEQDRTLTADDV---VMGERDRTEGVFDYLDDVI- 236
Query: 544 KRKTKRLRNSVSSSSNVSNEFDFLHSLISN 573
T R ++ ++ +V D L S +++
Sbjct: 237 --ATHSAREALQAAYDVDETPDDLLSWVAD 264
>sp|B0R601|RFCL_HALS3 Replication factor C large subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcL PE=3 SV=1
Length = 471
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 39/270 (14%)
Query: 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNS 365
T P ++ +++ G PG+GKT+ AH A G+ VVE+NASD R++ +E + + +
Sbjct: 32 TWPDHREAVVVHGSPGIGKTSAAHALANDAGWDVVELNASDQRTADVVERVAGEAARSGT 91
Query: 366 VMADSRPKCLV-IDEIDGALGD-GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKK 423
+ S + LV +DE D G+ +G I ++V +D P+
Sbjct: 92 LTGGSGGRKLVLLDEADNLHGNIDRGGSAAITRLV---------------DDAPQ----- 131
Query: 424 KGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTS 483
P++ + N+ Y + SLR + F S +V L+ +C E +
Sbjct: 132 ----------PIVLVANEYYEMS-SSLRSACREIEFRDVSKRSIVPVLRDVCRREDVTYE 180
Query: 484 SIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543
AL +AE D+RS +N LQ L ++ L D+ V+G +D + FD ++
Sbjct: 181 EDALAAIAEQNAGDLRSAVNDLQALAEQDRTLTADDV---VMGERDRTEGVFDYLDDVI- 236
Query: 544 KRKTKRLRNSVSSSSNVSNEFDFLHSLISN 573
T R ++ ++ +V D L S +++
Sbjct: 237 --ATHSAREALQAAYDVDETPDDLLSWVAD 264
>sp|B9LPV1|RFCL_HALLT Replication factor C large subunit OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=rfcL PE=3 SV=1
Length = 500
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 137/332 (41%), Gaps = 68/332 (20%)
Query: 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMA-- 368
+ ++L G PG+GKT+ AH A G+ VE+NASD R++ IE + N+ +
Sbjct: 37 HEAVVLHGSPGVGKTSAAHALANDMGWETVELNASDQRTADVIE-RFAGRAARNATLGGS 95
Query: 369 ---------DSRPKCLVI-DEIDGALGD-GKGAVEVILKMVSAERKSNTAKENVAKEDQP 417
D+ + LVI DE D G+ +G I ++V
Sbjct: 96 AAGGGAAGGDTASRQLVILDEADNIHGNYDRGGASAITELV------------------- 136
Query: 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477
K+ G +P++ I ND Y A R LR + F S +V L+ IC
Sbjct: 137 ----KESG-------QPIVLIANDYYDMA-RGLRNATQEIEFRDVSARSIVPVLRDICRK 184
Query: 478 ESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDI 537
E ++ S AL +AE D+R +N LQ + ++ + V D+ V G +D + F
Sbjct: 185 EGIEFESDALERIAERNRGDLRGAINDLQAATEGRDSIAVEDV---VTGDRDKALGLFPY 241
Query: 538 WKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPV 597
+ ++ + ++ S+ V D L I N N+L + +DP
Sbjct: 242 LDAVLKEESAE---EALQSAYAVDETPDDLTKWIEN-------------NVLDV--YDPS 283
Query: 598 MLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVY 629
+ V+ D L N+D+ + TQ + Y
Sbjct: 284 --EVVRAYDFLANADVWLGRVRATQNYSYWRY 313
>sp|A6URV8|RFCL_METVS Replication factor C large subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcL PE=3 SV=1
Length = 492
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 136/333 (40%), Gaps = 71/333 (21%)
Query: 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMAD 369
+QK +LL GPPG GKTT+AH A + V+E+NASD R+ I + S+
Sbjct: 38 KQKPVLLFGPPGSGKTTMAHAIANDYNFDVIELNASDKRNKDVISQVVGTAATSKSLTG- 96
Query: 370 SRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428
+ +V+DE+DG G D +G V I+K++ EN
Sbjct: 97 -KRTLIVLDEVDGLSGNDDRGGVSEIIKVLKNA-------EN------------------ 130
Query: 429 ASLLRPVICICNDLYAPALRSLRQ------IAKVHVFIQPSVSRVVSRLKHICNNESMKT 482
PVI ND+Y PAL SLR VH P V L+ I E +
Sbjct: 131 -----PVILTANDVYKPALSSLRNSVTMVDAGSVHTNSIPPV------LRKIALKEGFEI 179
Query: 483 SSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIF 542
+ ++ + D+R+ +N LQ L I + D ++ + +D +S FD + I
Sbjct: 180 DEKVIKLISSHAGGDLRAAINDLQALLTGGSI-EIED--AKNLPDRDSEKSIFDAIRIIM 236
Query: 543 QKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQ--LQYHDPVMLK 600
KT + S++ ++ E + IS EN+ + L+Y D
Sbjct: 237 ---KTTHYDIATSATVDLKEELGTVSEWIS-------------ENLPKEYLKYGD----- 275
Query: 601 TVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPL 633
K D L SD+ + R Q L+ Y L
Sbjct: 276 LAKGYDYLSKSDVFLGRVYRRQYFGLWRYASAL 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 351,961,966
Number of Sequences: 539616
Number of extensions: 15405168
Number of successful extensions: 79510
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 619
Number of HSP's that attempted gapping in prelim test: 73263
Number of HSP's gapped (non-prelim): 5723
length of query: 948
length of database: 191,569,459
effective HSP length: 127
effective length of query: 821
effective length of database: 123,038,227
effective search space: 101014384367
effective search space used: 101014384367
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)