Query 002241
Match_columns 948
No_of_seqs 551 out of 3494
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 19:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1969 DNA replication checkp 100.0 4E-115 8E-120 994.4 50.4 717 4-803 15-793 (877)
2 PRK04195 replication factor C 100.0 3.7E-47 7.9E-52 446.9 37.4 391 197-737 2-397 (482)
3 PF03215 Rad17: Rad17 cell cyc 100.0 1.7E-35 3.8E-40 346.2 29.9 312 194-618 4-410 (519)
4 KOG0989 Replication factor C, 100.0 5.1E-32 1.1E-36 287.6 20.3 268 195-590 22-301 (346)
5 KOG1968 Replication factor C, 100.0 3E-32 6.5E-37 331.1 15.9 419 196-737 307-748 (871)
6 PLN03025 replication factor C 100.0 1.4E-30 3E-35 291.4 26.9 285 198-614 2-291 (319)
7 KOG0991 Replication factor C, 100.0 7.7E-31 1.7E-35 267.8 19.0 209 195-516 13-226 (333)
8 TIGR00602 rad24 checkpoint pro 100.0 2.7E-30 5.8E-35 307.4 24.2 314 194-617 69-466 (637)
9 KOG1970 Checkpoint RAD17-RFC c 100.0 7.9E-30 1.7E-34 287.2 17.7 332 193-633 66-470 (634)
10 PRK07003 DNA polymerase III su 100.0 4.9E-28 1.1E-32 286.2 28.0 261 196-587 3-288 (830)
11 PRK14960 DNA polymerase III su 100.0 1E-26 2.3E-31 272.9 27.3 262 197-589 3-293 (702)
12 PRK14956 DNA polymerase III su 99.9 9.6E-27 2.1E-31 267.3 24.1 265 195-589 4-293 (484)
13 PRK12323 DNA polymerase III su 99.9 5.6E-26 1.2E-30 266.2 25.9 232 195-543 2-263 (700)
14 PRK08691 DNA polymerase III su 99.9 8.9E-26 1.9E-30 267.5 27.1 263 196-589 3-290 (709)
15 PRK14958 DNA polymerase III su 99.9 9.8E-26 2.1E-30 265.2 25.7 261 195-586 2-287 (509)
16 PRK14951 DNA polymerase III su 99.9 2.3E-25 5E-30 265.0 27.0 263 195-588 2-294 (618)
17 PRK00440 rfc replication facto 99.9 7.8E-25 1.7E-29 244.1 27.6 290 194-616 2-297 (319)
18 PRK12402 replication factor C 99.9 1.9E-24 4E-29 243.0 28.0 288 196-617 2-321 (337)
19 KOG2035 Replication factor C, 99.9 2.3E-24 5.1E-29 225.7 25.3 270 312-633 35-339 (351)
20 PRK14964 DNA polymerase III su 99.9 8.3E-25 1.8E-29 254.0 24.2 257 198-586 2-283 (491)
21 PRK07764 DNA polymerase III su 99.9 1.3E-24 2.8E-29 266.6 24.8 260 198-588 4-291 (824)
22 PRK14952 DNA polymerase III su 99.9 2.2E-24 4.7E-29 255.9 25.5 259 199-588 3-289 (584)
23 PRK14957 DNA polymerase III su 99.9 5.2E-24 1.1E-28 250.6 27.8 232 196-544 3-259 (546)
24 PRK06645 DNA polymerase III su 99.9 3.9E-24 8.4E-29 250.3 25.4 264 194-588 6-301 (507)
25 PRK14949 DNA polymerase III su 99.9 3.1E-24 6.7E-29 258.5 25.1 198 196-508 3-224 (944)
26 PHA02544 44 clamp loader, smal 99.9 1.4E-23 3.1E-28 234.3 28.5 282 194-617 6-294 (316)
27 PRK07994 DNA polymerase III su 99.9 3.3E-24 7.1E-29 255.6 24.4 198 196-508 3-224 (647)
28 PRK14963 DNA polymerase III su 99.9 4.9E-24 1.1E-28 250.4 25.1 262 196-589 2-286 (504)
29 PRK14961 DNA polymerase III su 99.9 1.3E-23 2.8E-28 239.2 26.3 262 196-588 3-289 (363)
30 PRK14969 DNA polymerase III su 99.9 3.6E-24 7.8E-29 253.5 21.5 231 196-543 3-258 (527)
31 PRK14959 DNA polymerase III su 99.9 7.5E-24 1.6E-28 250.4 23.8 231 195-542 2-257 (624)
32 PRK08451 DNA polymerase III su 99.9 2.4E-23 5.1E-28 243.9 27.3 232 197-545 2-258 (535)
33 PRK14962 DNA polymerase III su 99.9 1.3E-23 2.8E-28 245.0 24.4 256 198-584 3-283 (472)
34 PRK14965 DNA polymerase III su 99.9 2.1E-23 4.5E-28 249.6 23.2 233 196-545 3-260 (576)
35 PRK09111 DNA polymerase III su 99.9 6.3E-23 1.4E-27 244.7 26.0 263 195-588 10-302 (598)
36 PRK05896 DNA polymerase III su 99.9 5E-23 1.1E-27 242.3 24.2 232 195-543 2-258 (605)
37 PRK06305 DNA polymerase III su 99.9 1.1E-22 2.4E-27 236.8 25.5 233 195-544 3-261 (451)
38 PRK05563 DNA polymerase III su 99.9 1.2E-22 2.6E-27 242.0 24.1 233 196-545 3-260 (559)
39 PRK14953 DNA polymerase III su 99.9 3.6E-22 7.8E-27 233.9 24.7 232 196-544 3-259 (486)
40 PRK14948 DNA polymerase III su 99.9 5.3E-22 1.2E-26 238.2 25.5 231 196-543 3-259 (620)
41 PRK07133 DNA polymerase III su 99.9 5.4E-22 1.2E-26 237.7 24.6 234 194-544 3-258 (725)
42 PRK14950 DNA polymerase III su 99.9 7.3E-22 1.6E-26 237.4 24.5 233 196-545 3-261 (585)
43 PRK04132 replication factor C 99.9 5.8E-22 1.3E-26 241.5 23.8 250 314-615 567-824 (846)
44 TIGR02397 dnaX_nterm DNA polym 99.9 1.3E-21 2.9E-26 221.7 25.1 230 197-543 2-256 (355)
45 PRK14971 DNA polymerase III su 99.9 1.5E-21 3.4E-26 234.3 26.3 261 197-588 5-291 (614)
46 COG2256 MGS1 ATPase related to 99.9 3.1E-21 6.8E-26 212.5 25.4 161 312-511 49-219 (436)
47 PRK14970 DNA polymerase III su 99.9 1.7E-21 3.7E-26 222.3 24.2 234 195-545 3-249 (367)
48 PRK14955 DNA polymerase III su 99.9 2.2E-21 4.9E-26 223.3 22.1 231 197-544 4-272 (397)
49 PRK06647 DNA polymerase III su 99.9 5.1E-21 1.1E-25 227.5 24.8 232 196-544 3-259 (563)
50 PRK13342 recombination factor 99.9 5.8E-21 1.3E-25 221.1 24.4 163 312-511 37-203 (413)
51 PRK14954 DNA polymerase III su 99.9 6.5E-21 1.4E-25 227.8 25.1 197 198-509 5-233 (620)
52 COG2812 DnaX DNA polymerase II 99.9 1.8E-21 4E-26 225.4 17.7 260 199-589 6-290 (515)
53 PRK13341 recombination factor 99.8 2.3E-19 5.1E-24 218.1 26.7 161 312-510 53-223 (725)
54 KOG0990 Replication factor C, 99.8 4.5E-20 9.7E-25 197.8 11.4 170 312-513 63-241 (360)
55 PF05496 RuvB_N: Holliday junc 99.8 9E-19 1.9E-23 182.5 16.5 215 195-508 10-225 (233)
56 COG0470 HolB ATPase involved i 99.8 4.7E-19 1E-23 197.8 12.9 174 313-545 26-224 (325)
57 COG1222 RPT1 ATP-dependent 26S 99.8 7.7E-19 1.7E-23 191.0 11.9 204 305-545 179-396 (406)
58 KOG0733 Nuclear AAA ATPase (VC 99.8 8.2E-18 1.8E-22 191.8 16.5 190 306-511 218-413 (802)
59 PRK00080 ruvB Holliday junctio 99.8 2.7E-17 5.9E-22 185.1 20.3 216 194-508 10-226 (328)
60 KOG2028 ATPase related to the 99.7 1.1E-16 2.4E-21 173.3 20.5 159 312-508 163-340 (554)
61 TIGR00635 ruvB Holliday juncti 99.7 1.6E-15 3.5E-20 168.7 19.5 175 312-509 31-206 (305)
62 TIGR02902 spore_lonB ATP-depen 99.7 1E-15 2.3E-20 182.1 18.0 195 312-510 87-310 (531)
63 TIGR01241 FtsH_fam ATP-depende 99.6 4.3E-15 9.4E-20 176.1 16.7 217 195-510 41-276 (495)
64 CHL00195 ycf46 Ycf46; Provisio 99.6 8.8E-15 1.9E-19 171.4 18.7 176 307-509 255-444 (489)
65 PRK06893 DNA replication initi 99.6 1.1E-14 2.4E-19 155.8 17.8 159 312-509 40-208 (229)
66 KOG0733 Nuclear AAA ATPase (VC 99.6 2.9E-15 6.3E-20 171.3 13.7 187 303-512 537-736 (802)
67 PTZ00361 26 proteosome regulat 99.6 5.1E-15 1.1E-19 171.0 16.0 222 196-512 170-407 (438)
68 PRK08084 DNA replication initi 99.6 3.4E-14 7.5E-19 152.6 19.3 160 312-509 46-214 (235)
69 PRK08727 hypothetical protein; 99.6 1.9E-14 4.1E-19 154.4 17.1 159 312-509 42-209 (233)
70 KOG0730 AAA+-type ATPase [Post 99.6 4.3E-15 9.4E-20 172.4 12.6 187 301-512 458-655 (693)
71 COG1223 Predicted ATPase (AAA+ 99.6 7.6E-15 1.7E-19 153.3 12.7 158 311-500 151-325 (368)
72 PTZ00454 26S protease regulato 99.6 2.3E-14 4.9E-19 164.5 17.8 179 307-512 175-369 (398)
73 PRK09112 DNA polymerase III su 99.6 5.4E-14 1.2E-18 159.1 20.2 159 312-507 46-243 (351)
74 COG2255 RuvB Holliday junction 99.6 4.5E-14 9.7E-19 150.0 18.0 173 312-508 53-227 (332)
75 KOG0727 26S proteasome regulat 99.6 3.2E-15 7E-20 155.1 9.2 180 306-512 184-379 (408)
76 PRK07940 DNA polymerase III su 99.6 6.5E-14 1.4E-18 160.5 19.2 156 310-505 35-214 (394)
77 KOG0737 AAA+-type ATPase [Post 99.6 8.7E-15 1.9E-19 160.5 11.2 178 310-507 126-309 (386)
78 PLN00020 ribulose bisphosphate 99.6 1.8E-14 3.9E-19 159.6 13.6 172 307-496 144-330 (413)
79 TIGR02881 spore_V_K stage V sp 99.6 7E-14 1.5E-18 152.5 17.4 166 311-511 42-237 (261)
80 CHL00176 ftsH cell division pr 99.5 6.1E-14 1.3E-18 169.2 17.4 176 309-511 214-405 (638)
81 PTZ00112 origin recognition co 99.5 3.9E-13 8.5E-18 160.7 23.8 172 311-510 781-987 (1164)
82 PRK06620 hypothetical protein; 99.5 1.8E-13 4E-18 144.8 18.2 146 312-509 45-194 (214)
83 PRK03992 proteasome-activating 99.5 1.2E-13 2.6E-18 159.0 17.7 179 307-512 161-355 (389)
84 KOG0734 AAA+-type ATPase conta 99.5 1.6E-14 3.5E-19 162.9 9.9 202 281-511 305-523 (752)
85 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.4E-13 3E-18 146.2 16.6 159 312-509 39-206 (226)
86 KOG0728 26S proteasome regulat 99.5 4E-14 8.7E-19 147.0 11.2 184 305-515 175-374 (404)
87 PRK08903 DnaA regulatory inact 99.5 2.8E-13 6.1E-18 144.5 18.1 153 312-509 43-204 (227)
88 TIGR02928 orc1/cdc6 family rep 99.5 2.2E-13 4.7E-18 155.4 18.0 173 312-509 41-251 (365)
89 KOG0731 AAA+-type ATPase conta 99.5 4.9E-14 1.1E-18 168.3 11.3 208 281-513 312-537 (774)
90 PRK00149 dnaA chromosomal repl 99.5 2.5E-13 5.5E-18 159.3 15.4 166 312-508 149-326 (450)
91 TIGR01243 CDC48 AAA family ATP 99.5 3E-13 6.4E-18 167.7 16.4 178 308-511 484-674 (733)
92 TIGR01242 26Sp45 26S proteasom 99.5 5.8E-13 1.3E-17 152.2 17.1 177 308-511 153-345 (364)
93 TIGR03689 pup_AAA proteasome A 99.5 4.3E-13 9.2E-18 157.2 15.4 192 197-483 170-385 (512)
94 KOG0736 Peroxisome assembly fa 99.5 2.6E-13 5.7E-18 159.0 13.5 185 306-512 700-898 (953)
95 PRK07471 DNA polymerase III su 99.5 1.5E-12 3.3E-17 148.1 18.7 159 312-506 42-240 (365)
96 TIGR00678 holB DNA polymerase 99.5 7.8E-13 1.7E-17 137.0 14.3 150 311-501 14-188 (188)
97 KOG0729 26S proteasome regulat 99.4 1.1E-13 2.4E-18 144.8 7.6 207 303-545 203-422 (435)
98 PRK05642 DNA replication initi 99.4 1.5E-12 3.3E-17 139.7 16.5 159 312-509 46-213 (234)
99 KOG0743 AAA+-type ATPase [Post 99.4 1.1E-12 2.4E-17 147.8 15.8 140 306-478 230-386 (457)
100 PRK00411 cdc6 cell division co 99.4 2.9E-12 6.3E-17 147.7 19.7 170 312-509 56-259 (394)
101 PF00004 AAA: ATPase family as 99.4 4E-13 8.6E-18 129.6 10.2 119 314-460 1-131 (132)
102 TIGR00362 DnaA chromosomal rep 99.4 1.4E-12 2.9E-17 151.2 15.8 164 311-508 136-314 (405)
103 PF00308 Bac_DnaA: Bacterial d 99.4 3.6E-12 7.7E-17 135.6 17.3 165 311-509 34-213 (219)
104 PRK12422 chromosomal replicati 99.4 3.1E-12 6.6E-17 149.2 18.2 165 311-509 141-318 (445)
105 PRK05564 DNA polymerase III su 99.4 4.3E-12 9.3E-17 142.1 18.5 154 312-504 27-190 (313)
106 KOG0738 AAA+-type ATPase [Post 99.4 6.8E-13 1.5E-17 145.7 10.8 174 312-512 246-435 (491)
107 CHL00206 ycf2 Ycf2; Provisiona 99.4 1E-12 2.2E-17 166.8 13.8 184 306-513 1625-1861(2281)
108 KOG0651 26S proteasome regulat 99.4 6.3E-13 1.4E-17 142.4 10.0 176 307-508 162-352 (388)
109 TIGR00763 lon ATP-dependent pr 99.4 3.9E-12 8.5E-17 158.3 18.3 181 311-509 347-551 (775)
110 KOG0735 AAA+-type ATPase [Post 99.4 1.5E-12 3.2E-17 151.4 13.0 185 303-511 693-887 (952)
111 PRK10733 hflB ATP-dependent me 99.4 2.6E-12 5.6E-17 156.5 15.9 173 310-512 184-375 (644)
112 COG0464 SpoVK ATPases of the A 99.4 2.1E-12 4.5E-17 153.4 14.5 174 307-509 272-462 (494)
113 TIGR02903 spore_lon_C ATP-depe 99.4 7.7E-12 1.7E-16 151.4 19.2 190 312-509 176-399 (615)
114 PRK09087 hypothetical protein; 99.4 4.7E-12 1E-16 135.3 15.1 149 312-508 45-199 (226)
115 PRK14086 dnaA chromosomal repl 99.4 7.5E-12 1.6E-16 148.5 18.1 165 312-508 315-492 (617)
116 PRK07399 DNA polymerase III su 99.4 1.3E-11 2.7E-16 138.0 18.8 158 312-508 27-225 (314)
117 PRK14088 dnaA chromosomal repl 99.4 5.2E-12 1.1E-16 147.5 16.3 163 312-508 131-309 (440)
118 TIGR01243 CDC48 AAA family ATP 99.4 6.6E-12 1.4E-16 155.8 16.5 163 308-500 209-383 (733)
119 KOG0652 26S proteasome regulat 99.3 3.5E-12 7.6E-17 133.3 10.5 164 304-494 198-373 (424)
120 CHL00181 cbbX CbbX; Provisiona 99.3 1.6E-11 3.4E-16 135.7 15.4 164 312-511 60-253 (287)
121 PRK14087 dnaA chromosomal repl 99.3 2.1E-11 4.6E-16 142.6 17.3 164 312-509 142-324 (450)
122 TIGR02639 ClpA ATP-dependent C 99.3 8E-12 1.7E-16 154.7 14.4 166 312-510 204-403 (731)
123 KOG0740 AAA+-type ATPase [Post 99.3 3.8E-12 8.2E-17 144.5 10.3 173 308-508 183-370 (428)
124 COG0465 HflB ATP-dependent Zn 99.3 9.1E-12 2E-16 146.8 13.4 230 281-546 151-395 (596)
125 KOG0739 AAA+-type ATPase [Post 99.3 5.3E-12 1.1E-16 134.3 10.3 164 311-496 166-333 (439)
126 TIGR02880 cbbX_cfxQ probable R 99.3 1.8E-11 4E-16 135.1 14.3 164 312-511 59-252 (284)
127 TIGR03345 VI_ClpV1 type VI sec 99.3 3.1E-11 6.7E-16 150.9 16.1 167 312-510 209-408 (852)
128 COG0466 Lon ATP-dependent Lon 99.3 7.7E-11 1.7E-15 138.7 17.8 273 220-511 251-556 (782)
129 KOG0726 26S proteasome regulat 99.3 3.5E-12 7.6E-17 135.3 5.8 202 305-545 213-430 (440)
130 PRK05707 DNA polymerase III su 99.3 8E-11 1.7E-15 132.3 15.9 156 311-505 22-204 (328)
131 KOG2004 Mitochondrial ATP-depe 99.2 1.1E-10 2.3E-15 136.5 16.4 271 221-510 340-643 (906)
132 PRK10787 DNA-binding ATP-depen 99.2 1.2E-10 2.6E-15 144.2 15.3 165 311-494 349-535 (784)
133 KOG0730 AAA+-type ATPase [Post 99.2 5.8E-11 1.3E-15 138.5 11.2 177 304-509 211-401 (693)
134 CHL00095 clpC Clp protease ATP 99.2 1.1E-10 2.4E-15 146.2 12.9 167 312-511 201-400 (821)
135 PRK08058 DNA polymerase III su 99.1 8.6E-10 1.9E-14 124.4 17.1 152 312-505 29-205 (329)
136 PRK11034 clpA ATP-dependent Cl 99.1 3.9E-10 8.5E-15 138.7 15.4 170 312-503 489-709 (758)
137 PRK10865 protein disaggregatio 99.1 4.5E-10 9.8E-15 140.9 14.5 167 312-510 200-399 (857)
138 TIGR03346 chaperone_ClpB ATP-d 99.1 7.4E-10 1.6E-14 139.3 15.9 168 312-511 195-395 (852)
139 TIGR02640 gas_vesic_GvpN gas v 99.1 1E-09 2.2E-14 120.0 15.0 162 312-493 22-211 (262)
140 COG1474 CDC6 Cdc6-related prot 99.1 1E-09 2.2E-14 124.9 15.4 169 313-510 44-243 (366)
141 PRK05342 clpX ATP-dependent pr 99.1 2.2E-09 4.8E-14 124.0 16.2 91 311-401 108-214 (412)
142 PRK07993 DNA polymerase III su 99.1 2E-09 4.3E-14 121.4 15.0 157 310-506 23-206 (334)
143 TIGR03345 VI_ClpV1 type VI sec 99.0 2.7E-09 5.8E-14 133.7 17.1 170 313-508 598-826 (852)
144 PRK08769 DNA polymerase III su 99.0 4E-09 8.7E-14 117.9 16.1 157 311-505 26-209 (319)
145 PRK06871 DNA polymerase III su 99.0 4.3E-09 9.4E-14 117.8 15.8 154 311-504 24-203 (325)
146 COG0593 DnaA ATPase involved i 99.0 4.8E-09 1E-13 119.6 16.4 168 310-509 112-291 (408)
147 KOG0744 AAA+-type ATPase [Post 99.0 6.9E-10 1.5E-14 119.9 9.0 131 312-474 178-339 (423)
148 KOG1514 Origin recognition com 99.0 9.5E-09 2.1E-13 120.9 17.8 170 312-510 423-626 (767)
149 TIGR02639 ClpA ATP-dependent C 99.0 4.7E-09 1E-13 130.3 15.7 156 313-494 486-690 (731)
150 KOG0732 AAA+-type ATPase conta 99.0 4.9E-09 1.1E-13 129.1 14.5 181 303-510 291-490 (1080)
151 PRK11034 clpA ATP-dependent Cl 98.9 1E-08 2.2E-13 126.4 15.8 170 310-511 206-408 (758)
152 TIGR00382 clpX endopeptidase C 98.9 1.1E-08 2.5E-13 117.6 14.7 88 312-399 117-220 (413)
153 PF13177 DNA_pol3_delta2: DNA 98.9 9.2E-09 2E-13 104.4 12.1 117 311-462 19-161 (162)
154 PF08519 RFC1: Replication fac 98.9 1.2E-09 2.6E-14 109.6 5.5 119 608-738 1-121 (155)
155 TIGR03015 pepcterm_ATPase puta 98.9 1.5E-08 3.3E-13 110.5 14.6 167 311-506 43-240 (269)
156 cd00009 AAA The AAA+ (ATPases 98.9 7E-09 1.5E-13 100.3 10.5 87 311-400 19-110 (151)
157 PRK06090 DNA polymerase III su 98.9 2.4E-08 5.3E-13 111.6 15.7 153 310-505 24-202 (319)
158 PF05673 DUF815: Protein of un 98.9 5.9E-08 1.3E-12 103.3 17.0 144 311-489 52-221 (249)
159 PRK06964 DNA polymerase III su 98.9 2.6E-08 5.6E-13 112.4 14.7 156 310-505 20-226 (342)
160 PF06068 TIP49: TIP49 C-termin 98.8 2.7E-08 5.9E-13 110.8 13.9 61 448-508 334-395 (398)
161 PF07724 AAA_2: AAA domain (Cd 98.8 1.9E-09 4E-14 110.4 4.4 116 312-444 4-132 (171)
162 KOG2227 Pre-initiation complex 98.8 6.7E-08 1.5E-12 109.5 16.9 167 312-506 176-373 (529)
163 TIGR01650 PD_CobS cobaltochela 98.8 2E-08 4.4E-13 111.7 12.6 165 312-493 65-251 (327)
164 CHL00095 clpC Clp protease ATP 98.8 3.4E-08 7.3E-13 124.2 14.5 155 313-493 541-759 (821)
165 smart00382 AAA ATPases associa 98.8 3.3E-08 7.1E-13 94.5 11.0 72 312-386 3-93 (148)
166 PRK08699 DNA polymerase III su 98.8 3.2E-08 7E-13 111.3 12.4 128 311-473 21-183 (325)
167 TIGR03346 chaperone_ClpB ATP-d 98.8 7.6E-08 1.7E-12 121.4 16.5 171 312-508 596-821 (852)
168 PF07728 AAA_5: AAA domain (dy 98.8 3.2E-09 6.9E-14 104.3 2.7 86 313-401 1-92 (139)
169 KOG0735 AAA+-type ATPase [Post 98.7 6.8E-08 1.5E-12 113.4 13.4 165 308-496 428-607 (952)
170 PRK07952 DNA replication prote 98.7 7.7E-08 1.7E-12 103.9 12.5 82 312-400 100-190 (244)
171 KOG0742 AAA+-type ATPase [Post 98.7 3.5E-08 7.5E-13 109.4 9.8 140 308-477 381-530 (630)
172 PRK10865 protein disaggregatio 98.7 1E-07 2.2E-12 119.9 15.0 160 313-494 600-807 (857)
173 COG1224 TIP49 DNA helicase TIP 98.7 1.9E-07 4.2E-12 102.5 15.0 59 448-506 347-406 (450)
174 PRK08181 transposase; Validate 98.7 6.9E-08 1.5E-12 105.7 11.7 83 311-400 106-195 (269)
175 KOG0741 AAA+-type ATPase [Post 98.7 3E-08 6.5E-13 113.0 8.8 183 304-512 249-458 (744)
176 PRK05201 hslU ATP-dependent pr 98.7 7.5E-08 1.6E-12 109.9 11.2 36 312-347 51-86 (443)
177 TIGR00390 hslU ATP-dependent p 98.7 7.9E-08 1.7E-12 109.6 11.1 103 371-493 247-377 (441)
178 PHA02244 ATPase-like protein 98.6 3.7E-07 7.9E-12 102.9 15.0 131 312-464 120-263 (383)
179 PRK06526 transposase; Provisio 98.6 7.7E-08 1.7E-12 104.6 9.2 83 311-400 98-187 (254)
180 PF01695 IstB_IS21: IstB-like 98.6 3.4E-08 7.5E-13 101.8 5.9 83 311-400 47-136 (178)
181 PRK12377 putative replication 98.6 2.1E-07 4.6E-12 100.7 12.2 83 312-401 102-192 (248)
182 COG0714 MoxR-like ATPases [Gen 98.6 2.6E-07 5.6E-12 104.4 12.1 90 311-403 43-141 (329)
183 smart00763 AAA_PrkA PrkA AAA d 98.6 9.8E-07 2.1E-11 99.4 16.1 102 371-492 236-347 (361)
184 COG1219 ClpX ATP-dependent pro 98.6 1.2E-07 2.6E-12 102.7 8.3 94 312-405 98-207 (408)
185 PRK08116 hypothetical protein; 98.6 3.2E-07 6.9E-12 100.7 11.6 82 312-400 115-206 (268)
186 PF13401 AAA_22: AAA domain; P 98.6 8.4E-08 1.8E-12 92.7 5.8 86 311-398 4-112 (131)
187 PRK05917 DNA polymerase III su 98.6 9E-07 1.9E-11 97.5 14.5 140 310-499 18-176 (290)
188 KOG0736 Peroxisome assembly fa 98.5 5.5E-07 1.2E-11 106.9 13.3 164 310-500 430-600 (953)
189 COG0542 clpA ATP-binding subun 98.5 4E-07 8.6E-12 110.7 12.1 161 313-494 523-733 (786)
190 TIGR01817 nifA Nif-specific re 98.5 8.1E-07 1.8E-11 106.9 14.7 178 312-510 220-426 (534)
191 PF13173 AAA_14: AAA domain 98.5 5.2E-07 1.1E-11 87.7 10.1 121 311-467 2-127 (128)
192 PRK08939 primosomal protein Dn 98.5 5.2E-07 1.1E-11 100.7 11.2 68 310-383 155-229 (306)
193 PRK07132 DNA polymerase III su 98.5 2E-06 4.4E-11 95.5 15.7 151 311-504 18-184 (299)
194 PRK06835 DNA replication prote 98.5 8.1E-07 1.8E-11 100.0 12.6 83 312-401 184-275 (329)
195 PF01637 Arch_ATPase: Archaeal 98.5 1.3E-06 2.8E-11 92.2 12.1 164 311-501 20-231 (234)
196 KOG0745 Putative ATP-dependent 98.4 7.8E-07 1.7E-11 99.9 10.3 145 311-464 226-388 (564)
197 PRK09183 transposase/IS protei 98.4 8.1E-07 1.7E-11 97.1 9.9 86 310-400 101-192 (259)
198 PRK05818 DNA polymerase III su 98.4 4.2E-06 9.1E-11 90.5 14.2 155 311-508 7-194 (261)
199 COG1484 DnaC DNA replication p 98.4 1.3E-06 2.8E-11 95.2 10.3 84 310-400 104-195 (254)
200 PF07726 AAA_3: ATPase family 98.4 1.5E-07 3.2E-12 90.9 2.5 86 313-403 1-91 (131)
201 TIGR02974 phageshock_pspF psp 98.4 3.2E-06 7E-11 95.5 13.6 179 312-511 23-232 (329)
202 TIGR01128 holA DNA polymerase 98.4 2E-05 4.2E-10 87.6 19.1 200 336-589 18-224 (302)
203 PRK06921 hypothetical protein; 98.3 1.9E-06 4.2E-11 94.4 10.5 86 311-400 117-210 (266)
204 PRK11388 DNA-binding transcrip 98.3 5E-06 1.1E-10 102.3 15.1 179 312-511 349-553 (638)
205 PRK13407 bchI magnesium chelat 98.3 1.5E-05 3.2E-10 90.0 16.4 24 312-335 30-53 (334)
206 COG0542 clpA ATP-binding subun 98.3 2.2E-06 4.7E-11 104.5 9.9 173 306-510 186-391 (786)
207 PRK10820 DNA-binding transcrip 98.3 7.5E-06 1.6E-10 98.2 14.3 178 312-510 228-435 (520)
208 PRK07276 DNA polymerase III su 98.3 1.4E-05 2.9E-10 88.5 14.5 151 310-505 23-198 (290)
209 PRK07452 DNA polymerase III su 98.2 6.4E-05 1.4E-09 84.8 20.3 197 312-545 2-214 (326)
210 PRK05574 holA DNA polymerase I 98.2 5E-05 1.1E-09 85.9 19.4 229 310-589 16-259 (340)
211 KOG1942 DNA helicase, TBP-inte 98.2 2.3E-05 5.1E-10 84.2 14.6 57 450-506 355-412 (456)
212 PF05729 NACHT: NACHT domain 98.2 1.4E-05 3E-10 79.9 12.3 138 312-476 1-164 (166)
213 PRK11608 pspF phage shock prot 98.2 1.3E-05 2.8E-10 90.6 13.3 179 312-511 30-239 (326)
214 PF05621 TniB: Bacterial TniB 98.2 2.4E-05 5.2E-10 86.1 14.7 174 310-509 60-266 (302)
215 PRK15424 propionate catabolism 98.2 1.6E-05 3.4E-10 95.0 14.1 178 312-510 243-463 (538)
216 TIGR02329 propionate_PrpR prop 98.2 3.9E-05 8.4E-10 91.8 17.0 178 312-510 236-448 (526)
217 COG1221 PspF Transcriptional r 98.2 7.8E-06 1.7E-10 93.4 10.5 185 308-512 98-309 (403)
218 PRK13531 regulatory ATPase Rav 98.2 1.1E-05 2.4E-10 94.1 11.9 139 312-473 40-192 (498)
219 PRK15429 formate hydrogenlyase 98.1 3E-05 6.5E-10 96.2 16.2 179 312-511 400-608 (686)
220 PRK05022 anaerobic nitric oxid 98.1 1.9E-05 4.1E-10 94.6 13.8 179 312-511 211-419 (509)
221 PF12774 AAA_6: Hydrolytic ATP 98.1 6.1E-05 1.3E-09 80.9 16.3 145 312-481 33-183 (231)
222 PRK06585 holA DNA polymerase I 98.1 0.00026 5.5E-09 80.6 22.1 195 310-545 19-226 (343)
223 PF00931 NB-ARC: NB-ARC domain 98.1 1.6E-05 3.4E-10 87.6 11.9 155 310-499 18-197 (287)
224 COG1618 Predicted nucleotide k 98.1 3.4E-05 7.3E-10 77.0 12.3 113 312-459 6-158 (179)
225 PRK11331 5-methylcytosine-spec 98.1 1.6E-05 3.4E-10 92.2 11.5 26 311-336 194-219 (459)
226 PRK14700 recombination factor 98.1 4.2E-05 9E-10 84.0 14.1 72 439-510 16-93 (300)
227 PHA02624 large T antigen; Prov 98.1 7.9E-06 1.7E-10 96.8 8.7 128 305-460 425-560 (647)
228 COG2607 Predicted ATPase (AAA+ 98.1 0.00011 2.4E-09 77.6 15.8 143 312-489 86-253 (287)
229 PHA00729 NTP-binding motif con 98.1 1.6E-05 3.5E-10 84.5 9.8 65 312-381 18-92 (226)
230 PRK15115 response regulator Gl 98.1 3.4E-05 7.4E-10 90.7 13.6 179 312-511 158-366 (444)
231 PF00910 RNA_helicase: RNA hel 98.0 1.4E-05 3.1E-10 75.4 7.5 70 314-400 1-79 (107)
232 KOG2680 DNA helicase TIP49, TB 98.0 5.9E-05 1.3E-09 81.5 12.7 60 449-508 345-405 (454)
233 TIGR02442 Cob-chelat-sub cobal 98.0 8.2E-05 1.8E-09 91.3 15.7 23 313-335 27-49 (633)
234 TIGR02915 PEP_resp_reg putativ 98.0 5.6E-05 1.2E-09 88.8 12.8 179 312-511 163-371 (445)
235 CHL00081 chlI Mg-protoporyphyr 97.9 0.00013 2.8E-09 82.8 14.8 24 312-335 39-62 (350)
236 PF03266 NTPase_1: NTPase; In 97.9 9.5E-06 2E-10 83.0 5.2 64 370-464 94-160 (168)
237 cd01120 RecA-like_NTPases RecA 97.9 4.3E-05 9.3E-10 75.8 9.7 33 313-345 1-36 (165)
238 PRK05629 hypothetical protein; 97.9 0.00055 1.2E-08 77.1 19.4 221 310-585 5-234 (318)
239 TIGR02031 BchD-ChlD magnesium 97.9 7.6E-05 1.7E-09 90.7 13.3 178 311-508 16-234 (589)
240 KOG0741 AAA+-type ATPase [Post 97.9 0.00013 2.8E-09 84.2 13.3 74 308-384 535-611 (744)
241 PF00158 Sigma54_activat: Sigm 97.9 1.9E-05 4.2E-10 80.7 6.0 84 312-402 23-121 (168)
242 PHA02774 E1; Provisional 97.9 8.5E-05 1.8E-09 87.9 11.7 123 306-462 429-555 (613)
243 PRK10923 glnG nitrogen regulat 97.8 0.0001 2.2E-09 87.4 12.2 180 311-511 161-370 (469)
244 PF12775 AAA_7: P-loop contain 97.8 2.2E-05 4.7E-10 86.5 5.6 150 311-476 33-194 (272)
245 TIGR01818 ntrC nitrogen regula 97.8 0.00016 3.5E-09 85.4 12.8 179 312-511 158-366 (463)
246 PRK13695 putative NTPase; Prov 97.7 0.00025 5.4E-09 72.6 11.6 23 313-335 2-24 (174)
247 COG3267 ExeA Type II secretory 97.7 0.00043 9.3E-09 74.1 13.4 170 311-510 51-250 (269)
248 PF13207 AAA_17: AAA domain; P 97.7 2.4E-05 5.2E-10 74.7 3.5 32 313-344 1-32 (121)
249 TIGR02030 BchI-ChlI magnesium 97.7 0.0004 8.7E-09 78.7 13.8 24 312-335 26-49 (337)
250 PRK07914 hypothetical protein; 97.7 0.0027 5.8E-08 71.7 19.8 194 311-545 5-210 (320)
251 KOG2170 ATPase of the AAA+ sup 97.7 0.00026 5.7E-09 77.1 11.0 83 312-399 111-203 (344)
252 PRK11361 acetoacetate metaboli 97.7 0.00025 5.4E-09 83.6 11.9 179 312-511 167-375 (457)
253 PF14532 Sigma54_activ_2: Sigm 97.6 0.00018 3.8E-09 71.0 8.1 71 312-400 22-95 (138)
254 smart00350 MCM minichromosome 97.6 0.00022 4.7E-09 85.5 10.4 147 312-477 237-402 (509)
255 KOG1051 Chaperone HSP104 and r 97.6 0.00018 3.8E-09 89.3 9.2 108 310-444 590-713 (898)
256 PRK10365 transcriptional regul 97.6 0.00046 9.9E-09 81.0 12.3 180 310-510 161-370 (441)
257 PF01078 Mg_chelatase: Magnesi 97.6 0.00018 3.8E-09 75.5 7.5 88 312-402 23-134 (206)
258 PLN03210 Resistant to P. syrin 97.5 0.0012 2.6E-08 86.7 16.5 26 311-336 207-232 (1153)
259 PRK04841 transcriptional regul 97.5 0.0019 4.1E-08 82.7 16.6 158 310-501 31-222 (903)
260 PRK05800 cobU adenosylcobinami 97.4 0.00091 2E-08 68.6 10.6 72 312-384 2-89 (170)
261 PRK08487 DNA polymerase III su 97.4 0.016 3.5E-07 65.6 21.8 194 310-545 15-216 (328)
262 PRK04132 replication factor C 97.4 8.3E-05 1.8E-09 92.6 3.4 33 195-227 5-37 (846)
263 TIGR02237 recomb_radB DNA repa 97.4 0.00034 7.5E-09 73.6 7.6 40 307-346 8-50 (209)
264 PRK00131 aroK shikimate kinase 97.4 0.00014 3.1E-09 73.6 4.3 32 310-341 3-34 (175)
265 COG2204 AtoC Response regulato 97.4 0.00056 1.2E-08 79.8 9.6 179 312-511 165-373 (464)
266 PF13191 AAA_16: AAA ATPase do 97.4 0.00014 3E-09 74.2 3.8 37 311-347 24-63 (185)
267 PRK04296 thymidine kinase; Pro 97.3 0.0011 2.3E-08 69.3 10.2 33 312-344 3-38 (190)
268 PRK14738 gmk guanylate kinase; 97.3 0.0023 5.1E-08 67.5 12.3 27 308-334 10-36 (206)
269 PF13671 AAA_33: AAA domain; P 97.3 0.00015 3.2E-09 71.2 2.9 29 313-341 1-29 (143)
270 PF12780 AAA_8: P-loop contain 97.3 0.0022 4.8E-08 70.5 12.0 83 312-399 32-114 (268)
271 cd01124 KaiC KaiC is a circadi 97.3 0.0011 2.3E-08 68.2 8.9 32 313-344 1-35 (187)
272 PRK08118 topology modulation p 97.2 0.00025 5.4E-09 72.5 4.1 32 313-344 3-34 (167)
273 COG1466 HolA DNA polymerase II 97.2 0.019 4E-07 65.4 19.4 230 310-589 15-253 (334)
274 PRK09361 radB DNA repair and r 97.2 0.0013 2.9E-08 70.1 9.6 40 306-345 18-60 (225)
275 COG1102 Cmk Cytidylate kinase 97.2 0.00025 5.4E-09 70.9 3.3 29 313-341 2-30 (179)
276 COG1936 Predicted nucleotide k 97.2 0.00027 5.9E-09 71.5 3.2 31 313-344 2-32 (180)
277 cd00983 recA RecA is a bacter 97.1 0.0029 6.2E-08 71.3 11.3 74 306-385 50-147 (325)
278 PRK03839 putative kinase; Prov 97.1 0.00034 7.5E-09 71.9 3.8 31 313-343 2-32 (180)
279 PRK06762 hypothetical protein; 97.1 0.00043 9.4E-09 70.1 4.4 33 311-343 2-34 (166)
280 PRK00091 miaA tRNA delta(2)-is 97.1 0.0012 2.6E-08 73.9 8.2 161 311-513 4-174 (307)
281 TIGR02012 tigrfam_recA protein 97.1 0.0026 5.7E-08 71.5 10.4 39 306-344 50-91 (321)
282 PF13604 AAA_30: AAA domain; P 97.1 0.0019 4.1E-08 67.8 8.8 83 312-398 19-117 (196)
283 PF14516 AAA_35: AAA-like doma 97.1 0.011 2.4E-07 67.2 15.5 161 311-498 31-233 (331)
284 PRK06581 DNA polymerase III su 97.1 0.011 2.5E-07 63.3 14.5 152 311-500 15-183 (263)
285 PRK13900 type IV secretion sys 97.1 0.0062 1.3E-07 69.1 13.4 26 311-336 160-185 (332)
286 PRK06067 flagellar accessory p 97.1 0.0033 7.2E-08 67.5 10.8 40 306-345 20-62 (234)
287 PRK13947 shikimate kinase; Pro 97.1 0.00049 1.1E-08 69.9 4.0 32 313-344 3-34 (171)
288 PRK11823 DNA repair protein Ra 97.0 0.0031 6.8E-08 74.4 11.0 77 307-385 76-170 (446)
289 PRK00625 shikimate kinase; Pro 97.0 0.00053 1.1E-08 70.5 3.9 32 313-344 2-33 (173)
290 PF03969 AFG1_ATPase: AFG1-lik 97.0 0.0018 3.8E-08 74.3 8.5 29 309-337 60-88 (362)
291 TIGR00368 Mg chelatase-related 97.0 0.0011 2.4E-08 79.0 7.1 88 311-401 211-322 (499)
292 PRK08485 DNA polymerase III su 97.0 0.0039 8.5E-08 64.9 10.2 135 330-503 19-166 (206)
293 TIGR02688 conserved hypothetic 97.0 0.0026 5.6E-08 73.3 9.7 76 311-399 209-289 (449)
294 TIGR01618 phage_P_loop phage n 97.0 0.0008 1.7E-08 71.7 5.2 22 312-333 13-34 (220)
295 KOG3347 Predicted nucleotide k 97.0 0.00051 1.1E-08 67.8 3.3 33 311-343 7-39 (176)
296 PF06309 Torsin: Torsin; Inte 97.0 0.00086 1.9E-08 64.9 4.8 24 312-335 54-77 (127)
297 cd00227 CPT Chloramphenicol (C 97.0 0.00067 1.4E-08 69.6 4.4 31 312-342 3-33 (175)
298 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00052 1.1E-08 70.5 3.6 29 313-341 1-29 (183)
299 PRK14737 gmk guanylate kinase; 97.0 0.017 3.6E-07 60.2 14.7 25 311-335 4-28 (186)
300 PRK14531 adenylate kinase; Pro 97.0 0.00067 1.5E-08 70.2 4.3 29 312-340 3-31 (183)
301 cd00544 CobU Adenosylcobinamid 97.0 0.0026 5.7E-08 65.2 8.4 71 313-384 1-86 (169)
302 cd01121 Sms Sms (bacterial rad 97.0 0.0039 8.4E-08 71.8 10.6 76 307-384 78-171 (372)
303 cd03283 ABC_MutS-like MutS-lik 96.9 0.0052 1.1E-07 64.7 10.7 22 312-333 26-47 (199)
304 COG4619 ABC-type uncharacteriz 96.9 0.0035 7.7E-08 63.2 8.8 24 312-335 30-53 (223)
305 PF05272 VirE: Virulence-assoc 96.9 0.0027 5.8E-08 66.8 8.4 66 312-394 53-118 (198)
306 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00071 1.5E-08 69.6 4.1 31 311-341 3-33 (188)
307 cd02020 CMPK Cytidine monophos 96.9 0.00065 1.4E-08 66.7 3.6 31 313-343 1-31 (147)
308 cd00984 DnaB_C DnaB helicase C 96.9 0.0072 1.6E-07 65.0 12.0 38 307-344 9-50 (242)
309 COG0464 SpoVK ATPases of the A 96.9 0.0057 1.2E-07 73.2 12.2 169 306-500 13-187 (494)
310 cd01128 rho_factor Transcripti 96.9 0.0017 3.6E-08 70.7 7.0 27 311-337 16-42 (249)
311 PF06144 DNA_pol3_delta: DNA p 96.9 0.0037 8E-08 63.5 9.1 123 357-509 45-171 (172)
312 PRK13949 shikimate kinase; Pro 96.9 0.00073 1.6E-08 69.2 4.0 32 312-343 2-33 (169)
313 PF13245 AAA_19: Part of AAA d 96.9 0.0012 2.5E-08 58.7 4.7 33 312-344 11-50 (76)
314 cd00464 SK Shikimate kinase (S 96.9 0.00071 1.5E-08 67.2 3.8 30 314-343 2-31 (154)
315 cd01131 PilT Pilus retraction 96.9 0.0026 5.5E-08 66.8 8.1 24 313-336 3-26 (198)
316 PRK14530 adenylate kinase; Pro 96.9 0.0008 1.7E-08 71.4 4.2 30 312-341 4-33 (215)
317 cd02021 GntK Gluconate kinase 96.9 0.00067 1.4E-08 67.5 3.3 28 313-340 1-28 (150)
318 PRK05907 hypothetical protein; 96.9 0.1 2.2E-06 58.8 21.0 190 312-545 19-219 (311)
319 smart00072 GuKc Guanylate kina 96.9 0.006 1.3E-07 63.2 10.5 24 312-335 3-26 (184)
320 PRK07261 topology modulation p 96.9 0.00081 1.7E-08 69.0 3.9 32 313-344 2-33 (171)
321 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0077 1.7E-07 64.3 11.5 38 307-344 16-56 (229)
322 PRK14532 adenylate kinase; Pro 96.9 0.00082 1.8E-08 69.5 3.8 29 313-341 2-30 (188)
323 PRK14527 adenylate kinase; Pro 96.9 0.001 2.2E-08 69.2 4.4 32 310-341 5-36 (191)
324 PLN02840 tRNA dimethylallyltra 96.9 0.0043 9.3E-08 71.9 9.8 35 310-344 20-54 (421)
325 PTZ00111 DNA replication licen 96.8 0.0014 2.9E-08 81.8 6.0 111 312-443 493-611 (915)
326 PRK09354 recA recombinase A; P 96.8 0.0077 1.7E-07 68.4 11.3 77 306-385 55-152 (349)
327 cd01428 ADK Adenylate kinase ( 96.8 0.00091 2E-08 69.2 3.6 29 314-342 2-30 (194)
328 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0014 3.1E-08 71.2 5.1 32 313-344 1-35 (249)
329 PRK06547 hypothetical protein; 96.8 0.0013 2.8E-08 67.7 4.4 33 310-342 14-46 (172)
330 TIGR01313 therm_gnt_kin carboh 96.8 0.00087 1.9E-08 67.7 3.1 27 314-340 1-27 (163)
331 PRK08533 flagellar accessory p 96.8 0.0061 1.3E-07 65.6 9.7 38 307-344 20-60 (230)
332 TIGR00174 miaA tRNA isopenteny 96.8 0.0036 7.7E-08 69.4 8.0 32 313-344 1-32 (287)
333 PRK06217 hypothetical protein; 96.8 0.0011 2.4E-08 68.5 3.7 32 313-344 3-34 (183)
334 COG4088 Predicted nucleotide k 96.7 0.0018 3.9E-08 67.2 5.0 24 312-335 2-25 (261)
335 cd01122 GP4d_helicase GP4d_hel 96.7 0.0068 1.5E-07 66.4 10.0 39 307-345 26-68 (271)
336 PLN02200 adenylate kinase fami 96.7 0.0014 3.1E-08 70.7 4.4 37 308-346 40-76 (234)
337 PRK14528 adenylate kinase; Pro 96.7 0.0014 3E-08 68.1 4.1 30 312-341 2-31 (186)
338 COG1239 ChlI Mg-chelatase subu 96.7 0.023 4.9E-07 65.2 13.9 117 369-507 142-262 (423)
339 PRK14729 miaA tRNA delta(2)-is 96.7 0.0052 1.1E-07 68.5 8.7 154 312-515 5-175 (300)
340 COG3604 FhlA Transcriptional r 96.7 0.0066 1.4E-07 70.5 9.7 180 312-511 247-455 (550)
341 PRK01184 hypothetical protein; 96.7 0.0013 2.8E-08 67.9 3.6 30 312-342 2-31 (184)
342 COG0703 AroK Shikimate kinase 96.7 0.0015 3.2E-08 66.7 3.8 33 312-344 3-35 (172)
343 PRK13948 shikimate kinase; Pro 96.7 0.0017 3.8E-08 67.3 4.4 34 310-343 9-42 (182)
344 PRK13946 shikimate kinase; Pro 96.7 0.0016 3.4E-08 67.5 4.2 33 311-343 10-42 (184)
345 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.013 2.8E-07 63.3 11.3 39 306-344 16-57 (237)
346 TIGR02782 TrbB_P P-type conjug 96.7 0.0035 7.5E-08 70.2 7.1 25 311-335 132-156 (299)
347 PRK15455 PrkA family serine pr 96.7 0.0018 3.9E-08 77.0 5.0 31 312-342 104-135 (644)
348 cd01394 radB RadB. The archaea 96.7 0.0038 8.3E-08 66.1 7.1 39 307-345 15-56 (218)
349 cd01129 PulE-GspE PulE/GspE Th 96.7 0.011 2.3E-07 65.1 10.7 76 312-399 81-172 (264)
350 PRK13851 type IV secretion sys 96.6 0.02 4.3E-07 65.3 13.0 26 311-336 162-187 (344)
351 PTZ00088 adenylate kinase 1; P 96.6 0.0015 3.3E-08 70.2 3.8 31 314-344 9-39 (229)
352 COG3829 RocR Transcriptional r 96.6 0.017 3.7E-07 68.0 12.4 177 312-509 269-476 (560)
353 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.013 2.9E-07 64.2 11.0 39 306-344 31-72 (259)
354 PRK03731 aroL shikimate kinase 96.6 0.0018 4E-08 65.8 4.0 31 312-342 3-33 (171)
355 PRK02496 adk adenylate kinase; 96.6 0.0016 3.5E-08 67.1 3.6 29 313-341 3-31 (184)
356 PRK05057 aroK shikimate kinase 96.6 0.0021 4.5E-08 66.0 4.2 33 312-344 5-37 (172)
357 PRK04040 adenylate kinase; Pro 96.6 0.0018 4E-08 67.4 3.9 29 312-340 3-33 (188)
358 PRK13808 adenylate kinase; Pro 96.6 0.019 4E-07 64.9 11.9 29 314-342 3-31 (333)
359 PRK12723 flagellar biosynthesi 96.5 0.0069 1.5E-07 70.0 8.6 86 311-399 174-281 (388)
360 TIGR01351 adk adenylate kinase 96.5 0.0018 3.9E-08 68.5 3.6 28 314-341 2-29 (210)
361 PRK10875 recD exonuclease V su 96.5 0.0083 1.8E-07 73.2 9.6 47 311-357 167-219 (615)
362 cd00046 DEXDc DEAD-like helica 96.5 0.0038 8.2E-08 59.3 5.4 25 312-336 1-25 (144)
363 KOG2543 Origin recognition com 96.5 0.025 5.5E-07 63.9 12.4 90 310-399 29-143 (438)
364 PF08433 KTI12: Chromatin asso 96.5 0.0074 1.6E-07 66.5 8.3 79 312-398 2-93 (270)
365 PRK04182 cytidylate kinase; Pr 96.5 0.0021 4.6E-08 65.5 3.8 29 313-341 2-30 (180)
366 PRK13765 ATP-dependent proteas 96.5 0.0049 1.1E-07 75.4 7.5 26 312-337 51-76 (637)
367 PF06431 Polyoma_lg_T_C: Polyo 96.5 0.0032 6.9E-08 70.6 5.3 126 307-460 151-284 (417)
368 PF13238 AAA_18: AAA domain; P 96.5 0.0021 4.5E-08 61.4 3.3 22 314-335 1-22 (129)
369 TIGR02858 spore_III_AA stage I 96.5 0.0056 1.2E-07 67.4 7.1 25 312-336 112-136 (270)
370 cd02019 NK Nucleoside/nucleoti 96.5 0.0028 6.1E-08 54.9 3.8 22 314-335 2-23 (69)
371 PRK00279 adk adenylate kinase; 96.5 0.0022 4.7E-08 68.1 3.7 28 314-341 3-30 (215)
372 PF06745 KaiC: KaiC; InterPro 96.5 0.0092 2E-07 63.7 8.6 39 306-344 14-56 (226)
373 PF00625 Guanylate_kin: Guanyl 96.5 0.015 3.2E-07 60.1 9.8 28 311-338 2-29 (183)
374 TIGR00150 HI0065_YjeE ATPase, 96.5 0.003 6.4E-08 62.1 4.3 29 310-338 21-49 (133)
375 TIGR02173 cyt_kin_arch cytidyl 96.5 0.0024 5.1E-08 64.6 3.8 29 313-341 2-30 (171)
376 PRK14974 cell division protein 96.5 0.013 2.9E-07 66.4 10.1 39 311-349 140-181 (336)
377 cd03115 SRP The signal recogni 96.5 0.012 2.6E-07 60.0 9.0 36 313-348 2-40 (173)
378 PF13521 AAA_28: AAA domain; P 96.5 0.0019 4E-08 65.4 2.9 26 314-340 2-27 (163)
379 PRK04328 hypothetical protein; 96.4 0.021 4.6E-07 62.2 11.3 38 307-344 19-59 (249)
380 PHA02530 pseT polynucleotide k 96.4 0.0023 4.9E-08 71.3 3.8 27 312-338 3-30 (300)
381 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.02 4.2E-07 57.0 9.9 82 310-399 25-114 (144)
382 PF00437 T2SE: Type II/IV secr 96.4 0.0066 1.4E-07 66.6 7.1 76 311-399 127-219 (270)
383 PRK14722 flhF flagellar biosyn 96.4 0.013 2.9E-07 67.2 9.7 40 310-349 136-180 (374)
384 cd02027 APSK Adenosine 5'-phos 96.4 0.003 6.4E-08 63.3 3.9 32 313-344 1-35 (149)
385 COG2804 PulE Type II secretory 96.4 0.01 2.2E-07 69.6 8.7 64 312-382 259-338 (500)
386 cd01393 recA_like RecA is a b 96.4 0.009 2E-07 63.5 7.8 41 307-347 15-64 (226)
387 cd03222 ABC_RNaseL_inhibitor T 96.4 0.027 5.9E-07 58.2 11.0 82 310-399 24-115 (177)
388 cd03281 ABC_MSH5_euk MutS5 hom 96.4 0.0096 2.1E-07 63.3 7.9 22 311-332 29-50 (213)
389 TIGR03499 FlhF flagellar biosy 96.4 0.0086 1.9E-07 66.5 7.9 41 310-350 193-238 (282)
390 PRK09376 rho transcription ter 96.4 0.0053 1.1E-07 70.3 6.2 25 312-336 170-194 (416)
391 TIGR02525 plasmid_TraJ plasmid 96.4 0.0093 2E-07 68.6 8.2 25 311-335 149-173 (372)
392 PRK12339 2-phosphoglycerate ki 96.3 0.0032 6.9E-08 66.2 4.0 29 311-339 3-31 (197)
393 COG1373 Predicted ATPase (AAA+ 96.3 0.042 9.1E-07 64.0 13.6 67 313-383 39-106 (398)
394 TIGR01420 pilT_fam pilus retra 96.3 0.0062 1.3E-07 69.5 6.7 26 311-336 122-147 (343)
395 COG3854 SpoIIIAA ncharacterize 96.3 0.0055 1.2E-07 64.7 5.6 24 313-336 139-162 (308)
396 PRK08233 hypothetical protein; 96.3 0.0033 7.1E-08 64.3 3.8 25 312-336 4-28 (182)
397 TIGR00767 rho transcription te 96.3 0.0048 1E-07 70.9 5.4 27 310-336 167-193 (415)
398 PRK06696 uridine kinase; Valid 96.3 0.0054 1.2E-07 65.5 5.5 38 310-347 21-61 (223)
399 PF09848 DUF2075: Uncharacteri 96.3 0.01 2.2E-07 67.9 8.1 24 312-335 2-25 (352)
400 PRK00889 adenylylsulfate kinas 96.3 0.0045 9.8E-08 63.3 4.6 34 311-344 4-40 (175)
401 COG2909 MalT ATP-dependent tra 96.3 0.027 5.8E-07 69.3 11.6 79 307-385 33-143 (894)
402 PF00519 PPV_E1_C: Papillomavi 96.2 0.014 2.9E-07 66.4 8.4 125 305-462 256-383 (432)
403 PF01583 APS_kinase: Adenylyls 96.2 0.0064 1.4E-07 61.4 5.2 37 312-348 3-42 (156)
404 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.04 8.7E-07 55.3 11.1 25 311-335 25-49 (157)
405 PRK14526 adenylate kinase; Pro 96.2 0.0036 7.8E-08 66.5 3.6 27 314-340 3-29 (211)
406 PRK13406 bchD magnesium chelat 96.2 0.051 1.1E-06 66.1 13.6 173 312-508 26-226 (584)
407 PRK13833 conjugal transfer pro 96.2 0.0088 1.9E-07 67.5 6.6 25 311-335 144-168 (323)
408 PF00448 SRP54: SRP54-type pro 96.2 0.021 4.5E-07 60.0 9.0 40 311-350 1-43 (196)
409 cd03282 ABC_MSH4_euk MutS4 hom 96.2 0.032 7E-07 59.0 10.5 22 311-332 29-50 (204)
410 TIGR00764 lon_rel lon-related 96.2 0.009 2E-07 73.1 7.2 27 312-338 38-64 (608)
411 PLN02165 adenylate isopentenyl 96.2 0.0049 1.1E-07 69.4 4.4 34 309-342 41-74 (334)
412 PRK09862 putative ATP-dependen 96.2 0.0091 2E-07 71.1 7.0 25 311-335 210-234 (506)
413 PF13479 AAA_24: AAA domain 96.2 0.0036 7.8E-08 66.5 3.2 67 312-383 4-80 (213)
414 smart00534 MUTSac ATPase domai 96.1 0.047 1E-06 56.7 11.4 20 313-332 1-20 (185)
415 PF00406 ADK: Adenylate kinase 96.1 0.0031 6.8E-08 62.9 2.6 26 316-341 1-26 (151)
416 TIGR02322 phosphon_PhnN phosph 96.1 0.0044 9.5E-08 63.6 3.7 26 312-337 2-27 (179)
417 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.055 1.2E-06 54.9 11.5 88 313-400 4-124 (159)
418 COG0324 MiaA tRNA delta(2)-iso 96.1 0.012 2.7E-07 65.5 7.4 163 311-515 3-175 (308)
419 PRK13764 ATPase; Provisional 96.1 0.0092 2E-07 72.3 6.9 26 311-336 257-282 (602)
420 cd03243 ABC_MutS_homologs The 96.1 0.04 8.8E-07 57.8 11.0 21 312-332 30-50 (202)
421 cd03216 ABC_Carb_Monos_I This 96.1 0.025 5.3E-07 57.5 9.0 26 310-335 25-50 (163)
422 COG4650 RtcR Sigma54-dependent 96.1 0.013 2.8E-07 63.6 7.2 88 311-401 208-309 (531)
423 PRK10078 ribose 1,5-bisphospho 96.1 0.0043 9.4E-08 64.3 3.6 28 312-339 3-30 (186)
424 COG4608 AppF ABC-type oligopep 96.1 0.023 5E-07 61.9 9.1 89 310-400 38-154 (268)
425 PF07693 KAP_NTPase: KAP famil 96.1 0.19 4.2E-06 56.4 17.1 35 310-344 19-59 (325)
426 PRK11889 flhF flagellar biosyn 96.1 0.03 6.4E-07 64.4 10.3 38 311-348 241-281 (436)
427 PRK05541 adenylylsulfate kinas 96.1 0.0048 1E-07 63.2 3.7 26 311-336 7-32 (176)
428 PLN02674 adenylate kinase 96.1 0.0054 1.2E-07 66.5 4.1 30 311-340 31-60 (244)
429 PRK12608 transcription termina 96.0 0.01 2.2E-07 67.8 6.2 24 313-336 135-158 (380)
430 COG1125 OpuBA ABC-type proline 96.0 0.032 6.9E-07 60.1 9.5 26 310-335 26-51 (309)
431 TIGR00416 sms DNA repair prote 96.0 0.033 7.1E-07 66.0 10.7 76 307-384 90-183 (454)
432 TIGR00455 apsK adenylylsulfate 96.0 0.015 3.2E-07 60.1 6.9 37 311-347 18-57 (184)
433 COG5271 MDN1 AAA ATPase contai 96.0 0.04 8.6E-07 71.1 11.4 167 312-503 889-1071(4600)
434 PRK12338 hypothetical protein; 96.0 0.0053 1.2E-07 68.8 3.8 28 312-339 5-32 (319)
435 COG1126 GlnQ ABC-type polar am 96.0 0.016 3.4E-07 61.0 6.9 24 310-333 27-50 (240)
436 cd01125 repA Hexameric Replica 96.0 0.048 1E-06 58.8 11.0 48 313-362 3-65 (239)
437 cd01130 VirB11-like_ATPase Typ 96.0 0.015 3.3E-07 60.3 6.8 25 311-335 25-49 (186)
438 PF10443 RNA12: RNA12 protein; 96.0 0.17 3.6E-06 58.7 15.6 73 435-511 186-281 (431)
439 cd01672 TMPK Thymidine monopho 96.0 0.012 2.5E-07 60.8 5.9 32 313-344 2-36 (200)
440 TIGR00235 udk uridine kinase. 96.0 0.0061 1.3E-07 64.3 3.9 29 309-337 4-32 (207)
441 PRK14529 adenylate kinase; Pro 95.9 0.0095 2.1E-07 63.8 5.3 27 314-340 3-29 (223)
442 TIGR01447 recD exodeoxyribonuc 95.9 0.012 2.6E-07 71.7 6.7 24 311-334 160-183 (586)
443 cd03284 ABC_MutS1 MutS1 homolo 95.9 0.035 7.7E-07 59.1 9.6 22 312-333 31-52 (216)
444 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.014 3.1E-07 62.3 6.6 44 307-350 15-67 (235)
445 PRK09519 recA DNA recombinatio 95.9 0.035 7.5E-07 69.1 10.6 77 306-385 55-152 (790)
446 TIGR02238 recomb_DMC1 meiotic 95.9 0.015 3.2E-07 65.6 6.7 41 307-347 92-141 (313)
447 COG0563 Adk Adenylate kinase a 95.9 0.0064 1.4E-07 62.9 3.6 30 313-344 2-31 (178)
448 PRK08356 hypothetical protein; 95.9 0.0065 1.4E-07 63.5 3.6 29 312-341 6-34 (195)
449 PRK12724 flagellar biosynthesi 95.9 0.032 7E-07 64.7 9.5 40 310-349 222-265 (432)
450 PRK05703 flhF flagellar biosyn 95.9 0.03 6.5E-07 65.7 9.4 86 311-399 221-326 (424)
451 PF01443 Viral_helicase1: Vira 95.9 0.0067 1.5E-07 64.6 3.7 22 314-335 1-22 (234)
452 PF13086 AAA_11: AAA domain; P 95.8 0.0062 1.4E-07 64.1 3.4 23 313-335 19-41 (236)
453 PF01745 IPT: Isopentenyl tran 95.8 0.0068 1.5E-07 63.7 3.5 33 312-344 2-34 (233)
454 PRK13975 thymidylate kinase; P 95.8 0.013 2.7E-07 61.0 5.6 28 312-339 3-30 (196)
455 PRK12727 flagellar biosynthesi 95.8 0.065 1.4E-06 63.9 11.8 40 310-349 349-393 (559)
456 PF06414 Zeta_toxin: Zeta toxi 95.8 0.0072 1.6E-07 63.4 3.6 40 310-349 14-54 (199)
457 PRK13894 conjugal transfer ATP 95.8 0.022 4.8E-07 64.3 7.7 25 311-335 148-172 (319)
458 PF00485 PRK: Phosphoribulokin 95.8 0.0074 1.6E-07 63.0 3.6 25 313-337 1-25 (194)
459 cd02022 DPCK Dephospho-coenzym 95.8 0.0073 1.6E-07 62.3 3.5 29 313-342 1-29 (179)
460 TIGR01448 recD_rel helicase, p 95.8 0.019 4.1E-07 71.8 7.5 72 311-383 338-428 (720)
461 PF04665 Pox_A32: Poxvirus A32 95.7 0.25 5.5E-06 53.4 15.1 24 313-336 15-38 (241)
462 TIGR03263 guanyl_kin guanylate 95.7 0.0073 1.6E-07 61.8 3.3 26 312-337 2-27 (180)
463 COG1220 HslU ATP-dependent pro 95.7 0.013 2.7E-07 65.1 5.1 53 310-362 49-105 (444)
464 COG3283 TyrR Transcriptional r 95.7 0.08 1.7E-06 59.3 11.3 179 312-510 228-430 (511)
465 TIGR02524 dot_icm_DotB Dot/Icm 95.7 0.019 4.2E-07 65.8 6.9 26 310-335 133-158 (358)
466 PLN02459 probable adenylate ki 95.7 0.011 2.4E-07 64.5 4.7 29 313-341 31-59 (261)
467 PRK08154 anaerobic benzoate ca 95.7 0.0083 1.8E-07 67.4 3.9 31 311-341 133-163 (309)
468 smart00487 DEXDc DEAD-like hel 95.7 0.017 3.7E-07 58.4 5.8 33 312-344 25-62 (201)
469 TIGR01526 nadR_NMN_Atrans nico 95.7 0.022 4.7E-07 64.6 7.2 31 311-341 162-192 (325)
470 cd03280 ABC_MutS2 MutS2 homolo 95.7 0.019 4E-07 60.3 6.1 22 312-333 29-50 (200)
471 TIGR02788 VirB11 P-type DNA tr 95.7 0.015 3.3E-07 65.4 5.7 25 311-335 144-168 (308)
472 cd02024 NRK1 Nicotinamide ribo 95.7 0.0083 1.8E-07 62.5 3.3 28 313-340 1-29 (187)
473 TIGR00017 cmk cytidylate kinas 95.7 0.01 2.2E-07 63.4 4.1 29 312-340 3-31 (217)
474 PRK05480 uridine/cytidine kina 95.6 0.013 2.8E-07 61.8 4.7 26 311-336 6-31 (209)
475 COG5271 MDN1 AAA ATPase contai 95.6 0.043 9.2E-07 70.8 9.6 38 310-347 1542-1579(4600)
476 PF02367 UPF0079: Uncharacteri 95.6 0.011 2.4E-07 57.3 3.8 29 311-339 15-43 (123)
477 PRK03846 adenylylsulfate kinas 95.6 0.011 2.4E-07 62.0 4.0 37 309-345 22-61 (198)
478 PTZ00202 tuzin; Provisional 95.6 0.028 6.1E-07 65.0 7.5 36 310-345 285-320 (550)
479 COG1134 TagH ABC-type polysacc 95.6 0.071 1.5E-06 57.2 10.0 24 312-335 54-77 (249)
480 PRK09825 idnK D-gluconate kina 95.6 0.011 2.4E-07 61.0 3.8 27 312-338 4-30 (176)
481 PRK05973 replicative DNA helic 95.6 0.02 4.3E-07 61.9 5.9 49 307-357 60-111 (237)
482 KOG2228 Origin recognition com 95.6 0.1 2.2E-06 58.3 11.4 30 312-341 50-82 (408)
483 TIGR02768 TraA_Ti Ti-type conj 95.6 0.03 6.4E-07 70.3 8.2 33 312-344 369-404 (744)
484 PRK06761 hypothetical protein; 95.5 0.012 2.7E-07 65.0 4.3 31 312-342 4-34 (282)
485 COG0529 CysC Adenylylsulfate k 95.5 0.024 5.1E-07 57.9 5.9 39 311-349 23-64 (197)
486 PRK00300 gmk guanylate kinase; 95.5 0.011 2.5E-07 61.8 3.9 26 311-336 5-30 (205)
487 PRK14730 coaE dephospho-CoA ki 95.5 0.011 2.5E-07 61.9 3.9 30 312-341 2-31 (195)
488 PRK00023 cmk cytidylate kinase 95.5 0.013 2.8E-07 62.9 4.3 30 312-341 5-34 (225)
489 PRK04220 2-phosphoglycerate ki 95.5 0.013 2.8E-07 65.2 4.3 28 311-338 92-119 (301)
490 PLN02199 shikimate kinase 95.5 0.012 2.6E-07 65.1 4.1 32 312-343 103-134 (303)
491 cd03227 ABC_Class2 ABC-type Cl 95.5 0.1 2.3E-06 52.8 10.7 21 312-332 22-42 (162)
492 TIGR02236 recomb_radA DNA repa 95.5 0.024 5.1E-07 63.7 6.5 49 307-355 91-148 (310)
493 TIGR01425 SRP54_euk signal rec 95.5 0.027 5.9E-07 65.7 7.1 39 311-349 100-141 (429)
494 KOG3354 Gluconate kinase [Carb 95.5 0.014 2.9E-07 58.2 3.9 33 309-341 10-42 (191)
495 cd02028 UMPK_like Uridine mono 95.5 0.011 2.5E-07 61.0 3.5 32 313-344 1-35 (179)
496 PRK10867 signal recognition pa 95.4 0.031 6.7E-07 65.5 7.4 40 311-350 100-143 (433)
497 cd03285 ABC_MSH2_euk MutS2 hom 95.4 0.074 1.6E-06 56.9 9.6 24 310-333 29-52 (222)
498 PRK09518 bifunctional cytidyla 95.4 0.012 2.6E-07 73.6 4.0 32 313-344 3-34 (712)
499 PLN02748 tRNA dimethylallyltra 95.4 0.014 3.1E-07 68.7 4.4 35 309-343 20-54 (468)
500 PTZ00301 uridine kinase; Provi 95.4 0.013 2.9E-07 62.1 3.7 25 311-335 3-27 (210)
No 1
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=3.9e-115 Score=994.36 Aligned_cols=717 Identities=37% Similarity=0.558 Sum_probs=577.7
Q ss_pred cccCCCCChhhhhhhHhh---c--------CCCCCCCC-----CC---CC---CCCCCCCCCc-------cccC-CCCCC
Q 002241 4 DMDMHIPLPEELELLEAN---Y--------QDLDPPEQ-----DP---DP---PEPVPPDSLP-------LEIN-GHKRP 53 (948)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~-----~~---~~---~~~~~~~~~~-------~~~~-~~~~~ 53 (948)
+|..|||+||+|+..+.| | +|..+++. .. +. ..+.++ +.| .+++ ++||+
T Consensus 15 ~~~~diP~pedl~~s~~ng~~~~~~de~~n~~~~~~~g~~p~pl~~~ed~ed~~grvsh-p~p~~~r~~~~~vk~lnkr~ 93 (877)
T KOG1969|consen 15 DGQLDIPDPEDLLASVPNGDSEQRIDEVRNALEEVGYGKRPRPLNEVEDVEDQYGRVSH-PMPWHMRHTMETVKVLNKRQ 93 (877)
T ss_pred CCCcCCCChHHHhccccCcchhhhhhhhhhhhhccCCCCCCCCCCcchhhhhhcCCCCC-CcchhhccccchhhhhccCh
Confidence 478999999999999999 2 22233322 11 11 122222 222 3345 88998
Q ss_pred CCCCCC---CCCCCC-CchhhhhcccccCC----CcccccccCCCC-CCCcchhh-------------HHHHHhhhcccC
Q 002241 54 RSDTPK---SPIDVD-EPQFDEKRSRIVDN----DDEDWLRYSPPP-PQARDDAR-------------VEVEEKFVSRYA 111 (948)
Q Consensus 54 ~~~~~~---~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~ 111 (948)
...-.+ .--++| +++...++++.+|+ +++|||+.+++. .....+++ +.+..--+.|+.
T Consensus 94 en~~s~~~p~vl~~di~p~a~d~~~k~ddn~se~afed~l~ga~~~~sl~vl~~~~~~~~r~~~m~~t~~v~~~~i~~s~ 173 (877)
T KOG1969|consen 94 ENAVSRRAPEVLEQDINPAAADAERKMDDNHSENAFEDFLSGAQTISSLMVLEAEYIGSLRQSSMFSTGDVEQAPINRSD 173 (877)
T ss_pred hhhccCCCCccchhhcCCchhhhhhhhccccchhhhhcccccCccchhhhhhhcchhcccceeeeccccccccccccccc
Confidence 754333 223445 33367788899985 699999998865 22211111 123444577999
Q ss_pred CCCCCCcccccCC-CCCeeEEEEEccCcchhhhhhhccc----ccCCCCcccchhHHHHHHHHHHHHhhhcCCCCCCCCC
Q 002241 112 SEIDGDCLPVTAP-SGGDRVYVKISSSGVEERVKKLDVR----AHSNSLTSEPIDVLLQKVEQEAFNKALNSSSEGQSDR 186 (948)
Q Consensus 112 ~~i~~~~~~~t~~-~~g~r~y~~~~~~~~~~~~~~~~~~----~~~~~ll~~~i~~L~~~~~~e~~~~~~~~~~~~~~~~ 186 (948)
+.+.|++..+|.+ ++|+++|++++.........+.+.. ..+..+.++.++.+.++++.+-..+. .+.+...
T Consensus 174 ~~~~~~~~ii~~p~d~g~~~~~~~~~ak~~~~~i~~~~~~~~~~~~d~~~sv~~~~~~~e~e~~~~~~t----~e~et~~ 249 (877)
T KOG1969|consen 174 PINEGDGHIITFPDDGGETVLLKKKPAKLATGVISLRTEPDTVWRSDDLYSVNENSLEKEAEASVDDRT----NEQETSP 249 (877)
T ss_pred cccCCceeEEEecCCCCceehhhhhhhhhhhcccccccccchhhhhccchhHHHHHHHHHHhhhhhhcc----ccccCCc
Confidence 9999999999999 7799999988863222111211111 12566777778888887776533221 1111111
Q ss_pred CCCCCCcccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchh
Q 002241 187 SLPEKPVVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFT 266 (948)
Q Consensus 187 ~~~~~~~~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~ 266 (948)
....+. .+..||||||+|++|.||+||+++||+++.|||+||+||||..+.. +. .
T Consensus 250 it~~ts-~h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsr--------l~---------~------- 304 (877)
T KOG1969|consen 250 ITGKTS-SHDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSR--------LL---------A------- 304 (877)
T ss_pred cccccC-CCcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhh--------hc---------c-------
Confidence 111111 2445999999999999999999999999999999999999943210 00 0
Q ss_pred hcccCCCCCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCC
Q 002241 267 RKNRGNRWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASD 346 (948)
Q Consensus 267 ~k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd 346 (948)
.+| .|.+ +.|+.+.+..++|.+|+||||||||.|||||||++|+|+||.|+||||||
T Consensus 305 --s~~-~~~k--------------------e~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASD 361 (877)
T KOG1969|consen 305 --SKG-PTEK--------------------EVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASD 361 (877)
T ss_pred --ccc-cchh--------------------hhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccc
Confidence 011 1111 12444566788999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhccc-ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccc
Q 002241 347 DRSSSTIENKILDVVQMNSVM-ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425 (948)
Q Consensus 347 ~rs~~~~~~~I~~~~~~~sv~-~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~ 425 (948)
+|+...++++|.++++++++. .+++|.|||||||||.. .++++.|+.+++...+..... +..+.++||.
T Consensus 362 eRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~---~~~Vdvilslv~a~~k~~~Gk-------q~~~~~~rkk 431 (877)
T KOG1969|consen 362 ERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP---RAAVDVILSLVKATNKQATGK-------QAKKDKKRKK 431 (877)
T ss_pred cccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---HHHHHHHHHHHHhhcchhhcC-------cccchhhhhh
Confidence 999999999999999999998 67899999999999985 689999999998755432221 1222244555
Q ss_pred cccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 002241 426 CKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTL 505 (948)
Q Consensus 426 ~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~L 505 (948)
+..+.+.|||||||||+|.|+||+||++|.+|+|.+|+...+++||+.||.+||+.++..+|.+||+.+++|||+|||+|
T Consensus 432 kr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtL 511 (877)
T KOG1969|consen 432 KRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTL 511 (877)
T ss_pred hccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcc----ccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHH
Q 002241 506 QFLDKKKEI----LNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIF 581 (948)
Q Consensus 506 Q~~~~~~~~----~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~ 581 (948)
||++.+... +++..+....+|.||...++|++|..||+..++.+.+. ..+.+..+...++-.|..++++
T Consensus 512 QfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~w~ei~ql~k~~~~r~-------~~~~l~~l~~~~~l~~~servl 584 (877)
T KOG1969|consen 512 QFLASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIFQLRKKDRHRS-------IDEQLYGLLNQVELHGNSERVL 584 (877)
T ss_pred HHHHHhcccccccchhhhhhhhhhcccccccchHHHHHHHHHHhhcccccc-------hHHHhhhhhhhhhccCchHHHH
Confidence 999987655 56667777788999999999999999999987766443 3455666777777789999999
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHHHhhhhhHHhHHHHhcCCccccccchhHHHHHHHHhhccCCCCCCCChhHHHHHHH
Q 002241 582 DGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQIQKPNLEWPKSYQRYRNA 661 (948)
Q Consensus 582 ~~l~eNyl~~~~~D~~l~~~~~a~d~Ls~~D~l~~~i~~~Q~~~L~~Y~~~~~~a~h~lfa~~~~~~i~~P~~~~~~~~~ 661 (948)
+|||.+|+.+.|.|..+.+++.+++||.|+|.+.+.+|.+|+|+|++|.+++++.||.+||+.++.++-||...+..+++
T Consensus 585 qg~f~~~~~~~~~D~~i~~~~~~s~WL~F~D~l~~~~~s~qn~eLlrY~~~~~l~fh~l~at~~~~~i~~p~~~q~~~~k 664 (877)
T KOG1969|consen 585 QGCFSIFLRLKYSDLGIGKPANASDWLFFHDLLYQSMYSHQNWELLRYSPSVPLHFHQLFATIANKRIIRPKNSQYEQRK 664 (877)
T ss_pred hhhhccccccccccccccchhhhhhHHHhhhHHHHHHHhcCCeeecccccchhHHHHHHhcccCCcccCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHhcCchhhhhccCcchhHHHhHhhhhhhhCCCCcchhhhhcCCHHHHHHHHHHHHHHhhcCceEEeecC
Q 002241 662 FMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKNTKS 741 (948)
Q Consensus 662 ~~~~~~~l~s~~~~i~~~~~~~~s~~~l~~d~lp~ll~ilsp~~lrpv~~~~~~~~Ek~~l~~lv~~M~~~~L~~~~~k~ 741 (948)
+++.++++.+|++++.+...++++..++++|+|+++|.||.| .||||+.++|+.+|+++|+.+|.+|++|+|||.|.+.
T Consensus 665 l~~~~e~i~s~is~i~s~~~~~~~~ksllldli~~iL~il~P-~lkp~~~~l~~~re~aql~~lV~im~sY~Lty~q~~~ 743 (877)
T KOG1969|consen 665 LKRANEDIVSLISRIISYQGPLAASKSLLLDLIFEILPILDP-TLKPVNKSLYSKREKAQLEELVQIMCSYSLTYIQNRV 743 (877)
T ss_pred HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHhcCC-cccchhhhhhhhhHHHHHHHHHHHHHhcceeeEeeec
Confidence 899999999999999999988899999999999999999999 6999999999999999999999999999999999987
Q ss_pred CcccccCCCcccCCceeeEecCCccccccccCCCCCCccchHHHHHHHHHHHHHHHHHhhhh
Q 002241 742 DPLLNNLGNEVSHDVSTLSFDPPINEFITFKGYRSNHYVLALAVKQVLVHEVEKQRIMQVTI 803 (948)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~leP~id~l~~f~~~~~~~~~~~ya~kQ~i~~Ei~~e~~rr~~~ 803 (948)
+ +|+|+|+||||||+||.|+..... ..+.|+.+|+|+|++..+++|+.+.
T Consensus 744 ~-----------d~~~~~rldP~iDeLv~~~~~~~~-~~l~~~t~qlia~~lal~k~r~~~~ 793 (877)
T KOG1969|consen 744 E-----------DGQYGLRLDPPIDELVLFPPKHIN-EVLHKRTNQLIAHLLALEKKRALER 793 (877)
T ss_pred C-----------CcceeEEecCchhhhhccCCCCcc-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 468999999999999999976543 6888999999999999999998663
No 2
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=3.7e-47 Score=446.90 Aligned_cols=391 Identities=29% Similarity=0.488 Sum_probs=314.7
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
.+|+|||||+++.||+|++.....|..|++.|..
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~---------------------------------------------- 35 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK---------------------------------------------- 35 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc----------------------------------------------
Confidence 5899999999999999999999999999998861
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHH
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENK 356 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~ 356 (948)
|.+ .+++||+|||||||||+|+++|+++|++++++|+|+.++...+...
T Consensus 36 ------------------------------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~ 84 (482)
T PRK04195 36 ------------------------------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERV 84 (482)
T ss_pred ------------------------------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHH
Confidence 011 3789999999999999999999999999999999999999888888
Q ss_pred HHHHHhhhcccccCCCcEEEecCcccccC-CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcE
Q 002241 357 ILDVVQMNSVMADSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPV 435 (948)
Q Consensus 357 I~~~~~~~sv~~~~kp~iLIIDEID~l~~-~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPI 435 (948)
+..+..+.++.+ .++.||||||+|++.. .+.+.+..|++++.. ...||
T Consensus 85 i~~~~~~~sl~~-~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~------------------------------~~~~i 133 (482)
T PRK04195 85 AGEAATSGSLFG-ARRKLILLDEVDGIHGNEDRGGARAILELIKK------------------------------AKQPI 133 (482)
T ss_pred HHHhhccCcccC-CCCeEEEEecCcccccccchhHHHHHHHHHHc------------------------------CCCCE
Confidence 877776666542 3688999999999975 334667788887752 24789
Q ss_pred EEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCccc
Q 002241 436 ICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEIL 515 (948)
Q Consensus 436 I~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~ 515 (948)
|||||+.+...+++++++|..|.|.+|+..++..+|+.+|..+|+.++++++..|++.++||+|.|||.||.++.+...+
T Consensus 134 Ili~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~i 213 (482)
T PRK04195 134 ILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKL 213 (482)
T ss_pred EEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 99999999877778999999999999999999999999999999999999999999999999999999999988766666
Q ss_pred cccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHhhhhccCC
Q 002241 516 NVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHD 595 (948)
Q Consensus 516 ~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~eNyl~~~~~D 595 (948)
+...+.. ++.+|...++|++++.+|+.+.... .+..+ ...+.+++.++.||+|||+. .|.+
T Consensus 214 t~~~v~~--~~~~d~~~~if~~l~~i~~~k~~~~-------------a~~~~---~~~~~~~~~i~~~l~en~~~-~~~~ 274 (482)
T PRK04195 214 TLEDVKT--LGRRDREESIFDALDAVFKARNADQ-------------ALEAS---YDVDEDPDDLIEWIDENIPK-EYDD 274 (482)
T ss_pred cHHHHHH--hhcCCCCCCHHHHHHHHHCCCCHHH-------------HHHHH---HcccCCHHHHHHHHHhcccc-ccCC
Confidence 6555542 2348888999999999998654321 11222 23578999999999999987 4544
Q ss_pred hhHHHHHHHHHHhhhhhHHhHHHHhcCCccccccchhHHHHHHHHhhcc----CCCCCCCChhHHHHHHHHHHHHHHHHH
Q 002241 596 PVMLKTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVSQI----QKPNLEWPKSYQRYRNAFMEKMDIFKS 671 (948)
Q Consensus 596 ~~l~~~~~a~d~Ls~~D~l~~~i~~~Q~~~L~~Y~~~~~~a~h~lfa~~----~~~~i~~P~~~~~~~~~~~~~~~~l~s 671 (948)
++.++.|+++||.+|++.++++++|+|+||+|...++.+ .+.++.. ...++.||++++.... .+..+...++
T Consensus 275 --~~~~~~a~~~ls~ad~~~~~~~~~~~~~l~~~~~~~m~~-gv~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~ 350 (482)
T PRK04195 275 --PEDIARAYDALSRADIFLGRVKRTQNYDLWRYASDLMTA-GVALAKEKKKRGFTRYQPPSYWRLLSK-TKEKRETRDS 350 (482)
T ss_pred --HHHHHHHHHHHhHHHHHHHHHHhcCCcchHHHHHHHhhh-HHHHhccccCCCCCCcCCcHHHHHHhh-hhHHHHHHHH
Confidence 688999999999999999999999999999999887543 3444421 2346788988876543 3445556666
Q ss_pred HHhcCchhhhhccCcchhHHHhHhhhhhhhCCCCcchhhhhcCCHHHHHHHHHHHHHHhhcCceEE
Q 002241 672 WHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYK 737 (948)
Q Consensus 672 ~~~~i~~~~~~~~s~~~l~~d~lp~ll~ilsp~~lrpv~~~~~~~~Ek~~l~~lv~~M~~~~L~~~ 737 (948)
+...|.. ..|+|...+.++++|+|.-|+.. ...-++.++..|+|+-.
T Consensus 351 ~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~ 397 (482)
T PRK04195 351 IAKKIAE--KLHTSKRKVRREVLPFLSIIFKH-----------------NPELAARLAAFLELTEE 397 (482)
T ss_pred HHHHHHH--HhCCCHHHHHHHHHHHHHHHHhc-----------------CHHHHHHHHHHcCCCHH
Confidence 6655442 34677788899999776655532 14667889999998764
No 3
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=100.00 E-value=1.7e-35 Score=346.18 Aligned_cols=312 Identities=24% Similarity=0.307 Sum_probs=215.0
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
.+.++|+|||+|++..||+.|++++.+|..||+....
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~------------------------------------------- 40 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS------------------------------------------- 40 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------------------------------------------
Confidence 3578999999999999999999999999999995210
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC-CCCCCh--
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA-SDDRSS-- 350 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa-Sd~rs~-- 350 (948)
+....++|||+|||||||||++++||+++|++|+||.. .+.+..
T Consensus 41 ---------------------------------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~ 87 (519)
T PF03215_consen 41 ---------------------------------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDN 87 (519)
T ss_pred ---------------------------------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccc
Confidence 11123699999999999999999999999999999854 331110
Q ss_pred --HH----------HHHH---HHHH-H---hhhccc-----ccCCCcEEEecCcccccCCChh-HHHHHHHHHHhhhccc
Q 002241 351 --ST----------IENK---ILDV-V---QMNSVM-----ADSRPKCLVIDEIDGALGDGKG-AVEVILKMVSAERKSN 405 (948)
Q Consensus 351 --~~----------~~~~---I~~~-~---~~~sv~-----~~~kp~iLIIDEID~l~~~~~~-~~~~Ll~li~~~~~~~ 405 (948)
.. +... +.++ + ....+. ...+++||||||++.++..+.. +.+.|..++..
T Consensus 88 ~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~----- 162 (519)
T PF03215_consen 88 QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRS----- 162 (519)
T ss_pred ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHc-----
Confidence 00 1111 1111 1 111111 1246889999999998765443 33344444431
Q ss_pred cccccccccCchhhhhhccccccccCCC-cEEEEecCCC-------------------chhhhhhccceEEEEecCcCHH
Q 002241 406 TAKENVAKEDQPEKISKKKGCKKASLLR-PVICICNDLY-------------------APALRSLRQIAKVHVFIQPSVS 465 (948)
Q Consensus 406 ~~~~~~~~~~~~~k~~~kk~~~~~~~~r-PII~icNDl~-------------------~p~Lr~Lr~~~~iI~F~~p~~~ 465 (948)
... |+|+|+.|.. .+.+. -...+..|.|++.+..
T Consensus 163 -------------------------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il-~~~~i~~I~FNpIa~T 216 (519)
T PF03215_consen 163 -------------------------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEIL-NHPGITRIKFNPIAPT 216 (519)
T ss_pred -------------------------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHH-hCCCceEEEecCCCHH
Confidence 123 8888777321 11111 1236788999999999
Q ss_pred HHHHHHHHHhhhc-----CC-CCC--HHHHHHHHHHccCCHHHHHHHHHHHHhcCcc----------ccccc--------
Q 002241 466 RVVSRLKHICNNE-----SM-KTS--SIALTTLAEYTECDIRSCLNTLQFLDKKKEI----------LNVMD-------- 519 (948)
Q Consensus 466 ~l~~~L~~I~~~E-----gi-~id--~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~----------~~~~~-------- 519 (948)
.+.+.|..||..| +. .++ ...|+.|++.++||||+|||+|||+|.++.. .....
T Consensus 217 ~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~g~~~~~~~k~g~~~~~~~v~~~~ks~ 296 (519)
T PF03215_consen 217 FMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLKGDNNLRPKKKGFSLKADAVLSLSKSK 296 (519)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcCCCCCCCccccCCcccccceeccccCC
Confidence 9999999999998 32 333 4569999999999999999999999983210 00000
Q ss_pred -----------cccceeccccccccHHHHHHHHHhcchhhhhccccCCCC----------CchhhHHHHHHHHhccCChH
Q 002241 520 -----------IGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSS----------NVSNEFDFLHSLISNRGDYD 578 (948)
Q Consensus 520 -----------i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~i~s~gd~d 578 (948)
-....++.||.++++||++++|+++++...... +.... .....++.+++ ++..+.+
T Consensus 297 ~~~~~~~~~~~~~~~~i~~Rd~sL~lFHAlGKILynKR~~~~~~-~~~~l~~~l~~~~R~~l~~~~e~vi~--~s~~~~~ 373 (519)
T PF03215_consen 297 RKSKPDTVKEESSLQSIGGRDESLSLFHALGKILYNKREPDDEV-DSERLPSHLSHHERDPLLVDPEEVIE--ESHMDSS 373 (519)
T ss_pred CcccccccccccccccccccccchHHHHHhhhheeccccCCCcc-ccccCcchhhhcccCccccCHHHHHH--HhcCChH
Confidence 011346789999999999999999997543211 10000 01223445443 3477999
Q ss_pred HHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhHHhHHH
Q 002241 579 VIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQYI 618 (948)
Q Consensus 579 ~i~~~l~eNyl~~~~~D~~l~~~~~a~d~Ls~~D~l~~~i 618 (948)
.++.+|||||+..+ ..+++++.|+||||++|++....
T Consensus 374 ~f~~~LhENY~~f~---~~i~~~~~~~d~LS~aD~l~~~~ 410 (519)
T PF03215_consen 374 TFVLFLHENYLDFC---SDIEDASDASDYLSDADLLSSDW 410 (519)
T ss_pred HHHHHHHHhccchh---hhHHHHHHHHHHhhHHHhccCcc
Confidence 99999999998755 45899999999999999986553
No 4
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-32 Score=287.58 Aligned_cols=268 Identities=23% Similarity=0.337 Sum_probs=208.4
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
.++.|++||||++|+||+|++.++..|++-+.. .
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~--------------------------------------------- 55 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLR-R--------------------------------------------- 55 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhh-c---------------------------------------------
Confidence 578899999999999999999999998886662 0
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------CcceecCCCCC
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------HVVEVNASDDR 348 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------~viEiNaSd~r 348 (948)
...++|||||||||||++|+++|+++.. .|.+.||||+|
T Consensus 56 -----------------------------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 56 -----------------------------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred -----------------------------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 0158999999999999999999999864 78999999999
Q ss_pred ChHHHHHHHHHHHhhhccc-----c-cCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhh
Q 002241 349 SSSTIENKILDVVQMNSVM-----A-DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISK 422 (948)
Q Consensus 349 s~~~~~~~I~~~~~~~sv~-----~-~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~ 422 (948)
+...+..++.++.+..... . ...++||||||+|.++. .++.+|.+.++....
T Consensus 101 Gisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---daq~aLrr~mE~~s~------------------- 158 (346)
T KOG0989|consen 101 GISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---DAQAALRRTMEDFSR------------------- 158 (346)
T ss_pred cccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---HHHHHHHHHHhcccc-------------------
Confidence 9999999999888754332 1 12348999999999976 577778888764221
Q ss_pred ccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHH
Q 002241 423 KKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCL 502 (948)
Q Consensus 423 kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aI 502 (948)
..-+|+|||.+.. .++++.++|..++|.+...+.++.+|+.||.+||+.+|+++++.|++.|+||+|.|+
T Consensus 159 ---------~trFiLIcnylsr-ii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ai 228 (346)
T KOG0989|consen 159 ---------TTRFILICNYLSR-IIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAI 228 (346)
T ss_pred ---------ceEEEEEcCChhh-CChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 2459999999875 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHH
Q 002241 503 NTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFD 582 (948)
Q Consensus 503 n~LQ~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~ 582 (948)
++||-++..++.++.......+.|.-. ..-+.++|....... ...-...+.+++.++.++-.++.
T Consensus 229 t~Lqsls~~gk~It~~~~~e~~~GvVp-~~~l~~lle~a~S~d--------------~~~~v~~~Rei~~sg~~~~~lms 293 (346)
T KOG0989|consen 229 TTLQSLSLLGKRITTSLVNEELAGVVP-DEKLLDLLELALSAD--------------TPNTVKRVREIMRSGYSPLQLMS 293 (346)
T ss_pred HHHHHhhccCcccchHHHHHHHhccCC-HHHHHHHHHHHHccC--------------hHHHHHHHHHHHHhccCHHHHHH
Confidence 999999987666652222212212211 124556666555433 12234445566667777777777
Q ss_pred HHHHHhhh
Q 002241 583 GIHENILQ 590 (948)
Q Consensus 583 ~l~eNyl~ 590 (948)
.+++-+..
T Consensus 294 QLa~vi~~ 301 (346)
T KOG0989|consen 294 QLAEVIMD 301 (346)
T ss_pred HHHHHHHh
Confidence 77776654
No 5
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.97 E-value=3e-32 Score=331.12 Aligned_cols=419 Identities=25% Similarity=0.357 Sum_probs=294.4
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..+|++||+|++..+++++......+..||..|+.. + ...| + .+.
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~---------------------------~--~~sy-~--~~~--- 351 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDK---------------------------E--KSSY-K--ENE--- 351 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhcc---------------------------c--cccc-c--ccC---
Confidence 589999999999999999999999999999999521 0 0011 0 000
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCc-eEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHH
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQK-VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIE 354 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k-~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~ 354 (948)
.+ + ..+ ++|++||||+||||.+|++|+++||.|+|.||++.|++..+.
T Consensus 352 ----------------~~-------------s--s~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~ 400 (871)
T KOG1968|consen 352 ----------------PD-------------S--SKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELL 400 (871)
T ss_pred ----------------cc-------------h--hhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHH
Confidence 00 0 012 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccC-----------CCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhc
Q 002241 355 NKILDVVQMNSVMADS-----------RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKK 423 (948)
Q Consensus 355 ~~I~~~~~~~sv~~~~-----------kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~k 423 (948)
+.+.++...+++.... ...|||+||+|++++.+++.+..|..++.
T Consensus 401 ~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~------------------------ 456 (871)
T KOG1968|consen 401 NKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK------------------------ 456 (871)
T ss_pred hhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHH------------------------
Confidence 9999998877765321 23399999999999988888888888875
Q ss_pred cccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 002241 424 KGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLN 503 (948)
Q Consensus 424 k~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn 503 (948)
.+++||||||||..++..+++-+.|..++|..|....+..++..||..|++.+++..++.|++.++||||++|+
T Consensus 457 ------ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~ 530 (871)
T KOG1968|consen 457 ------KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIM 530 (871)
T ss_pred ------hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHH
Confidence 24699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccccccccccceecc--ccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHH
Q 002241 504 TLQFLDKKKEILNVMDIGSQVVGR--KDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIF 581 (948)
Q Consensus 504 ~LQ~~~~~~~~~~~~~i~~~~vg~--kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~ 581 (948)
.|||++............. .+-. ++.....|++...+|...+... .... ....-+++ ..++....
T Consensus 531 ~lq~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~L~~~~~~s--~~~~-----~~~k~~~~-----~ed~~~~p 597 (871)
T KOG1968|consen 531 QLQFWSLSKPAELPKKKGT-PIKTSKKNITVKDFDAAEGLLDISRVAS--EETS-----NQSKAELY-----FEDYSISP 597 (871)
T ss_pred HHhhhhccchhhhccccCc-cccccccccccchhHHHhhhccHhhhhh--hhhh-----ccchHHHh-----ccccccch
Confidence 9999965432211111111 1222 6777889999999998322211 1000 01111111 36777788
Q ss_pred HHHHHHhhhhccCC-----hhHHHHHHHHHHhhhhhHHhHHHHhcCC-ccccccchhHHHHHHHHhhc-cCCCCCCCChh
Q 002241 582 DGIHENILQLQYHD-----PVMLKTVKCLDCLGNSDLMHQYIMRTQQ-MPLYVYQPPLAITVHRLVSQ-IQKPNLEWPKS 654 (948)
Q Consensus 582 ~~l~eNyl~~~~~D-----~~l~~~~~a~d~Ls~~D~l~~~i~~~Q~-~~L~~Y~~~~~~a~h~lfa~-~~~~~i~~P~~ 654 (948)
.++.+||+.+...- ..+.++.+|.|.++..|+...++..... |+|+.+..+.......-+.. ....++.||.|
T Consensus 598 ~~v~~n~~~~~~~~~~~~~~~l~~~~~~ad~is~~d~~~~~~r~~~~~~~L~~~~a~~s~~~p~~~~~~~~~~~i~f~~~ 677 (871)
T KOG1968|consen 598 LKVQENYLQVLPRSMKQILDELEDVSEAADSISLGDLRPKSIRGPELDWKLNPLHAVDSKVLPASKVGGHLLFRLGFPQW 677 (871)
T ss_pred hhcchhhhcccchhhhhhHHHHHHHhhhhhhhhhhhhcchhhcCccchhhhhhhhhhhhhhcchhhhhhccccccccccc
Confidence 88999998643221 1245788999999999999999987654 99998876544322211211 12346778887
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhccCc--chhHHHhHhhhhhhhCCCCcchhhhhcCCHHHHHHHHHHHHHHhhc
Q 002241 655 YQRYRNAFMEKMDIFKSWHSKIPPYISRHLST--ESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSY 732 (948)
Q Consensus 655 ~~~~~~~~~~~~~~l~s~~~~i~~~~~~~~s~--~~l~~d~lp~ll~ilsp~~lrpv~~~~~~~~Ek~~l~~lv~~M~~~ 732 (948)
..++.......+ .+++ +.++.+...+. ..+..++.+.+..- ..+|...+ .++....++.+|.+|
T Consensus 678 ~~~~sk~~~~~~-~l~e----l~~h~~~~~s~~~~~~~~~y~~i~~~~----~~~~~~~~-----~~d~~p~~i~~~vdy 743 (871)
T KOG1968|consen 678 LGENSKSGKLKR-FLQE----LLPHTRLKQSANKARVRESYNPISRQF----SPVPLALQ-----SKDGKPSAIESMVDY 743 (871)
T ss_pred cCccccccchhH-HHHH----hchhhhhhhccchhhhhhhhhhhhhhc----cCCccccc-----cCCCCchhHHhhhhh
Confidence 766543211111 3333 33333333333 22333333322221 12222222 334577899999999
Q ss_pred CceEE
Q 002241 733 SLTYK 737 (948)
Q Consensus 733 ~L~~~ 737 (948)
.|...
T Consensus 744 ~~~~e 748 (871)
T KOG1968|consen 744 DLINE 748 (871)
T ss_pred hhhhh
Confidence 88775
No 6
>PLN03025 replication factor C subunit; Provisional
Probab=99.97 E-value=1.4e-30 Score=291.42 Aligned_cols=285 Identities=21% Similarity=0.288 Sum_probs=214.4
Q ss_pred cchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCC
Q 002241 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNG 277 (948)
Q Consensus 198 LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~ 277 (948)
+|+|||||++|+|++||+.....|..|+...
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------------------------------------------- 32 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------------------------------------------- 32 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-------------------------------------------------
Confidence 6999999999999999999887777665520
Q ss_pred CccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHH
Q 002241 278 NFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSST 352 (948)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~ 352 (948)
...++||+|||||||||+|+++|+++ ...++|+|+||.++.+.
T Consensus 33 --------------------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~ 80 (319)
T PLN03025 33 --------------------------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80 (319)
T ss_pred --------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHH
Confidence 01368999999999999999999997 23589999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCC
Q 002241 353 IENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLL 432 (948)
Q Consensus 353 ~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~ 432 (948)
+++.+..+.+.......++.+||||||+|.+.. .+.++|++.++... ..
T Consensus 81 vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---~aq~aL~~~lE~~~----------------------------~~ 129 (319)
T PLN03025 81 VRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---GAQQALRRTMEIYS----------------------------NT 129 (319)
T ss_pred HHHHHHHHHhccccCCCCCeEEEEEechhhcCH---HHHHHHHHHHhccc----------------------------CC
Confidence 988888766543222235689999999999964 45677777775311 12
Q ss_pred CcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 002241 433 RPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 433 rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~ 512 (948)
..+|++||... ..+.+++++|..+.|.+++.+++..+|..+|.+||+.++++++..|++.++||+|.++|.||.++...
T Consensus 130 t~~il~~n~~~-~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~ 208 (319)
T PLN03025 130 TRFALACNTSS-KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGF 208 (319)
T ss_pred ceEEEEeCCcc-ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 44899999754 45678899999999999999999999999999999999999999999999999999999999876554
Q ss_pred ccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHhhhhc
Q 002241 513 EILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQ 592 (948)
Q Consensus 513 ~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~eNyl~~~ 592 (948)
..++.+.+.. ..| ......+|+++..+...+ ....+..+.+++..+.++..++..+|.-.....
T Consensus 209 ~~i~~~~v~~-~~~-~~~~~~i~~~i~~~~~~~--------------~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~ 272 (319)
T PLN03025 209 GFVNQENVFK-VCD-QPHPLHVKNIVRNCLKGK--------------FDDACDGLKQLYDLGYSPTDIITTLFRVVKNYD 272 (319)
T ss_pred CCCCHHHHHH-HcC-CCCHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 4454444432 122 334447788887776532 234566777888888888899998865443322
Q ss_pred cCChhHHHHHHHHHHhhhhhHH
Q 002241 593 YHDPVMLKTVKCLDCLGNSDLM 614 (948)
Q Consensus 593 ~~D~~l~~~~~a~d~Ls~~D~l 614 (948)
+.+. .-...+++++..|.-
T Consensus 273 ~~~~---~~~~~~~~~~~~~~~ 291 (319)
T PLN03025 273 MPEF---LKLEYLREIGFAHMR 291 (319)
T ss_pred CCHH---HHHHHHHHHHHHHHH
Confidence 2221 123567777776653
No 7
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.97 E-value=7.7e-31 Score=267.77 Aligned_cols=209 Identities=25% Similarity=0.414 Sum_probs=177.9
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
...+|||||||..+.|++||+.++..|.-..+. |
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~-------------------------------------------g--- 46 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKE-------------------------------------------G--- 46 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHc-------------------------------------------C---
Confidence 345699999999999999999999887664442 0
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh-C--C--CcceecCCCCCC
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC-G--Y--HVVEVNASDDRS 349 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel-G--~--~viEiNaSd~rs 349 (948)
.-.+++|+||||+||||.++++|+++ | | -|+|+||||+|+
T Consensus 47 -----------------------------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 47 -----------------------------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG 91 (333)
T ss_pred -----------------------------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc
Confidence 01579999999999999999999985 5 3 599999999999
Q ss_pred hHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccc
Q 002241 350 SSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKA 429 (948)
Q Consensus 350 ~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~ 429 (948)
.+.++.+|..+.|..-....++.+|||+||+|.++.+.+.+++..++++..
T Consensus 92 IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~----------------------------- 142 (333)
T KOG0991|consen 92 IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSN----------------------------- 142 (333)
T ss_pred cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcc-----------------------------
Confidence 999999999999987666678899999999999987555555555555542
Q ss_pred cCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 430 SLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 430 ~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
...+++.||... ..+.|+.++|-+++|.+.+..++++||..|++.|+++++++.|++|+..++||+|+++|+||...
T Consensus 143 --ttRFalaCN~s~-KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 143 --TTRFALACNQSE-KIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV 219 (333)
T ss_pred --cchhhhhhcchh-hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh
Confidence 234788898754 47889999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCcccc
Q 002241 510 KKKEILN 516 (948)
Q Consensus 510 ~~~~~~~ 516 (948)
...+-++
T Consensus 220 ~g~g~Vn 226 (333)
T KOG0991|consen 220 NGFGLVN 226 (333)
T ss_pred ccccccc
Confidence 6655443
No 8
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.7e-30 Score=307.40 Aligned_cols=314 Identities=20% Similarity=0.232 Sum_probs=213.1
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
....+|+|||||++++||++|++.++.|..||+.+.. +
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~---~--------------------------------------- 106 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL---E--------------------------------------- 106 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc---c---------------------------------------
Confidence 3567999999999999999999999999999996321 0
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCccee-cCCCCCC---
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV-NASDDRS--- 349 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi-NaSd~rs--- 349 (948)
....++++|+|||||||||+++++|+++++.++|| |+.+...
T Consensus 107 ----------------------------------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 107 ----------------------------------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred ----------------------------------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 01126899999999999999999999999999994 4432111
Q ss_pred ------------------hHHHHHHHHHHHhhhccc---ccCCCcEEEecCcccccCCChhHHHHHHH-HHHhhhccccc
Q 002241 350 ------------------SSTIENKILDVVQMNSVM---ADSRPKCLVIDEIDGALGDGKGAVEVILK-MVSAERKSNTA 407 (948)
Q Consensus 350 ------------------~~~~~~~I~~~~~~~sv~---~~~kp~iLIIDEID~l~~~~~~~~~~Ll~-li~~~~~~~~~ 407 (948)
...+...+..+....... ..++..||||||||+++.....++..++. ....
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e------- 225 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVS------- 225 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhc-------
Confidence 122222222222111111 13467899999999988654455555554 2210
Q ss_pred cccccccCchhhhhhccccccccCCCcEEEEecCCCc----------h--h-h-hhhc--cceEEEEecCcCHHHHHHHH
Q 002241 408 KENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA----------P--A-L-RSLR--QIAKVHVFIQPSVSRVVSRL 471 (948)
Q Consensus 408 ~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~----------p--~-L-r~Lr--~~~~iI~F~~p~~~~l~~~L 471 (948)
....|+|||+|+... + . | ..++ .++.+|.|++.+...+.++|
T Consensus 226 ----------------------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L 283 (637)
T TIGR00602 226 ----------------------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFL 283 (637)
T ss_pred ----------------------CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHH
Confidence 224799999996321 1 0 0 2343 36678999999999999999
Q ss_pred HHHhhhcCCCC-------CHHHHHHHHHHccCCHHHHHHHHHHHHhcCcccc---------ccc-------------c--
Q 002241 472 KHICNNESMKT-------SSIALTTLAEYTECDIRSCLNTLQFLDKKKEILN---------VMD-------------I-- 520 (948)
Q Consensus 472 ~~I~~~Egi~i-------d~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~~---------~~~-------------i-- 520 (948)
..||..|+..+ +++++..||..++||||+|||.|||+|.+...+. ... .
T Consensus 284 ~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~ 363 (637)
T TIGR00602 284 NRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNEN 363 (637)
T ss_pred HHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhH
Confidence 99999886432 4689999999999999999999999976542110 000 0
Q ss_pred -ccceeccccccccHHHHHHHHHhcchhhhhcccc----CCC--CC---chhhHHHHHHHHhccCChH-HHHHHHHHHhh
Q 002241 521 -GSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSV----SSS--SN---VSNEFDFLHSLISNRGDYD-VIFDGIHENIL 589 (948)
Q Consensus 521 -~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~----~~~--~~---~~~~~~~l~~~i~s~gd~d-~i~~~l~eNyl 589 (948)
.-..++.+|.++++||++++|+++++........ .+. .. .-..++.+++. +.++.. .+..++|+||+
T Consensus 364 ~~l~~~~~rd~sl~lfhalgkily~Kr~~~~~~~~~~~p~~l~~~~r~~l~~~~~~v~e~--~~~~~~~~f~~~lheny~ 441 (637)
T TIGR00602 364 QEIQALGGKDVSLFLFRALGKILYCKRATLNELDSPRLPSHLSELSRDTLMVGPEEVVEM--SHMPGDKTFNLYSHQNYN 441 (637)
T ss_pred HHHHhhccccchhHHHHHhChhhcccccCccccccCccchhhhhhcccchhcChHhhhhh--ccccHHHHHHHHHhcccc
Confidence 0013577899999999999999999754321100 000 00 01112233321 233444 88899999998
Q ss_pred hhccCChhHHHHHHHHHHhhhhhHHhHH
Q 002241 590 QLQYHDPVMLKTVKCLDCLGNSDLMHQY 617 (948)
Q Consensus 590 ~~~~~D~~l~~~~~a~d~Ls~~D~l~~~ 617 (948)
..+ ..+.++..+.+|||++|++..-
T Consensus 442 ~f~---~~~~~~~~~~~~ls~~D~l~~d 466 (637)
T TIGR00602 442 DFF---VEFDDEVKASEFLNFADILSGD 466 (637)
T ss_pred hhh---hhhhHHHHHHHHhhHHHhcccc
Confidence 533 2488999999999999998755
No 9
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.97 E-value=7.9e-30 Score=287.24 Aligned_cols=332 Identities=21% Similarity=0.284 Sum_probs=221.8
Q ss_pred cccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCC
Q 002241 193 VVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGN 272 (948)
Q Consensus 193 ~~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~ 272 (948)
....+||+|||+|++..||..|++++.+|..||+...-. .+ +
T Consensus 66 ~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~-----------------------------------~~-~-- 107 (634)
T KOG1970|consen 66 EDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEF-----------------------------------TP-K-- 107 (634)
T ss_pred ccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHh-----------------------------------cc-C--
Confidence 346899999999999999999999999999999942210 00 0
Q ss_pred CCCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCC-CCCC--
Q 002241 273 RWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS-DDRS-- 349 (948)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaS-d~rs-- 349 (948)
-..++|||+||+||||||++++||+++||.++||++. +.+.
T Consensus 108 ------------------------------------l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 108 ------------------------------------LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ------------------------------------CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 0127999999999999999999999999999999843 2111
Q ss_pred ----------------hHHHHHHHHHHHhhhccc-----ccCCCcEEEecCcccccCC-ChhHHHHHHHHHHhhhccccc
Q 002241 350 ----------------SSTIENKILDVVQMNSVM-----ADSRPKCLVIDEIDGALGD-GKGAVEVILKMVSAERKSNTA 407 (948)
Q Consensus 350 ----------------~~~~~~~I~~~~~~~sv~-----~~~kp~iLIIDEID~l~~~-~~~~~~~Ll~li~~~~~~~~~ 407 (948)
-..++..+..+...+++. ....+++|+|||+..++.. +...++.++..+..
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s------- 224 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVS------- 224 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHh-------
Confidence 112222222222212221 2356789999999998765 33444444444321
Q ss_pred cccccccCchhhhhhccccccccCCCcEEEE-ecCCC----chhh-----hhhccceEEEEecCcCHHHHHHHHHHHhhh
Q 002241 408 KENVAKEDQPEKISKKKGCKKASLLRPVICI-CNDLY----APAL-----RSLRQIAKVHVFIQPSVSRVVSRLKHICNN 477 (948)
Q Consensus 408 ~~~~~~~~~~~k~~~kk~~~~~~~~rPII~i-cNDl~----~p~L-----r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~ 477 (948)
...+|+|++ ++-.. .+.. -....+...|.|++....-+.+.|+.||..
T Consensus 225 ----------------------~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~ 282 (634)
T KOG1970|consen 225 ----------------------IGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRI 282 (634)
T ss_pred ----------------------cCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHH
Confidence 223665554 43221 1110 112346778999999999999999999999
Q ss_pred cCCCCC------HHHHHHHHHHccCCHHHHHHHHHHHHhcCc-ccc--------ccc--------cc------cceeccc
Q 002241 478 ESMKTS------SIALTTLAEYTECDIRSCLNTLQFLDKKKE-ILN--------VMD--------IG------SQVVGRK 528 (948)
Q Consensus 478 Egi~id------~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~-~~~--------~~~--------i~------~~~vg~k 528 (948)
++.+.. ...+..||..++||||+|||+|||++..+. ... ..+ .. -..+|.+
T Consensus 283 e~~~~s~~k~~~~~~v~~i~~~s~GDIRsAInsLQlssskg~~~~~~~ks~rs~~s~~~kg~~~~~~s~~nq~i~~ig~~ 362 (634)
T KOG1970|consen 283 EANKKSGIKVPDTAEVELICQGSGGDIRSAINSLQLSSSKGENNLRPRKSGRSGKSDIGKGKSKRMESPENQELQSIGGR 362 (634)
T ss_pred hcccccCCcCchhHHHHHHHHhcCccHHHHHhHhhhhcccCccCCCcccccccccchhhccccccccCchHHHHHHhhcc
Confidence 988777 788999999999999999999999954321 000 000 00 0236778
Q ss_pred cccccHHHHHHHHHhcchhhhhccccCC-C--------CCchhhHHHHHHHHhccCChHHHHHHHHHHhhhhccCChhHH
Q 002241 529 DMSRSAFDIWKEIFQKRKTKRLRNSVSS-S--------SNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVML 599 (948)
Q Consensus 529 D~~~~lf~i~~~If~~~~~~~~~~~~~~-~--------~~~~~~~~~l~~~i~s~gd~d~i~~~l~eNyl~~~~~D~~l~ 599 (948)
|....+|++++.+++.++....+..... . ....+.-+.++.+ +++..++++.++|.||+... ..++
T Consensus 363 de~L~~f~al~~~l~pkr~s~~~~~s~~~~~~~a~~~r~~L~~~peevl~~--S~~~~~~~v~fl~~N~~~f~---~nid 437 (634)
T KOG1970|consen 363 DESLFLFRALGKVLYPKRNSDNELKSPRSPSHLAEYERDTLKHEPEEVLEM--SHMQGGNFVRFLHQNYSDFF---SNID 437 (634)
T ss_pred hHHHHHHHhhcccccccccccccccccCCcchhhhhhhhhhhcCchhhhhh--cccccchhhhhhhhccchhh---hccc
Confidence 8888999999999998764322211000 0 0011224455544 57778899999999998744 2356
Q ss_pred HHHHHHHHhhhhhHHhHHHHhcCCccccccchhH
Q 002241 600 KTVKCLDCLGNSDLMHQYIMRTQQMPLYVYQPPL 633 (948)
Q Consensus 600 ~~~~a~d~Ls~~D~l~~~i~~~Q~~~L~~Y~~~~ 633 (948)
++..+.||++++|.+...+...| |=+-.|..+.
T Consensus 438 ~i~~~se~~~~~d~~s~~w~~~~-~L~~~y~~~~ 470 (634)
T KOG1970|consen 438 DIVRASEFLSFADQLSGDWNTRQ-SLLREYRTLI 470 (634)
T ss_pred ceeeehhhhhHHHHhcccchhHH-HHHHHHHHHH
Confidence 78889999999999887765543 3333444433
No 10
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.96 E-value=4.9e-28 Score=286.17 Aligned_cols=261 Identities=19% Similarity=0.224 Sum_probs=204.3
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+.|.+||||++|+||+|++...+.|.+||+...
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gR---------------------------------------------- 36 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGR---------------------------------------------- 36 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCC----------------------------------------------
Confidence 4679999999999999999999999999988311
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
..+.+|||||+|+||||+|+++|+.+++
T Consensus 37 ----------------------------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 37 ----------------------------------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 1257899999999999999999998864
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++|+|+++.++.+.+++.+..+... . ..++.+||||||+|.|.. ...+.|+++|+...
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~-P--~~gr~KVIIIDEah~LT~---~A~NALLKtLEEPP--------- 147 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYA-P--VDARFKVYMIDEVHMLTN---HAFNAMLKTLEEPP--------- 147 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhc-c--ccCCceEEEEeChhhCCH---HHHHHHHHHHHhcC---------
Confidence 58999999888888888777654422 2 145789999999999853 67889999987532
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
....||++||+... .+..++++|..|.|.+++.+++.++|..||.+||+.++++.+..|+
T Consensus 148 -------------------~~v~FILaTtd~~K-Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA 207 (830)
T PRK07003 148 -------------------PHVKFILATTDPQK-IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA 207 (830)
T ss_pred -------------------CCeEEEEEECChhh-ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 13569999999764 5678999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHH-HHHHhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHH
Q 002241 492 EYTECDIRSCLNTL-QFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSL 570 (948)
Q Consensus 492 e~s~GDIR~aIn~L-Q~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 570 (948)
+.++||+|.+||.| |.++...+.++.+.+.. .+|..|.+ .+|++++.++.... ...+..+.++
T Consensus 208 ~~A~GsmRdALsLLdQAia~~~~~It~~~V~~-~LG~~d~~-~i~~ll~aL~~~d~--------------~~~l~~~~~l 271 (830)
T PRK07003 208 RAAQGSMRDALSLTDQAIAYSANEVTETAVSG-MLGALDQT-YMVRLLDALAAGDG--------------PEILAVADEM 271 (830)
T ss_pred HHcCCCHHHHHHHHHHHHHhccCCcCHHHHHH-HhCCCCHH-HHHHHHHHHHcCCH--------------HHHHHHHHHH
Confidence 99999999999996 44544444555554542 35767766 48999998887542 2334455555
Q ss_pred HhccCChHHHHHHHHHH
Q 002241 571 ISNRGDYDVIFDGIHEN 587 (948)
Q Consensus 571 i~s~gd~d~i~~~l~eN 587 (948)
+....++..++..|.+.
T Consensus 272 ~~~g~~~~~~l~dLl~~ 288 (830)
T PRK07003 272 ALRSLSFSTALQDLASL 288 (830)
T ss_pred HHhCCCHHHHHHHHHHH
Confidence 55566776666555433
No 11
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=1e-26 Score=272.90 Aligned_cols=262 Identities=19% Similarity=0.250 Sum_probs=202.5
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
+.|.+||||++|+||+|++...+.|.+|++.-
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~g------------------------------------------------ 34 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERG------------------------------------------------ 34 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC------------------------------------------------
Confidence 46899999999999999999999999999830
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------- 337 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------- 337 (948)
+ ....+||+||+|+||||+|+++|+.+++
T Consensus 35 -------------------------------r-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 35 -------------------------------R-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred -------------------------------C-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 0 1267899999999999999999999865
Q ss_pred -----CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccccc
Q 002241 338 -----HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVA 412 (948)
Q Consensus 338 -----~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~ 412 (948)
+++|+++++.++.+.+++.+..+... .. .++.+|+||||+|.+.. .+.++|+++++...
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~-P~--~gk~KV~IIDEVh~LS~---~A~NALLKtLEEPP---------- 146 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYA-PT--QGRFKVYLIDEVHMLST---HSFNALLKTLEEPP---------- 146 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhh-hh--cCCcEEEEEechHhcCH---HHHHHHHHHHhcCC----------
Confidence 68999999888887777766544322 21 35789999999999854 57788999887421
Q ss_pred ccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 002241 413 KEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492 (948)
Q Consensus 413 ~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e 492 (948)
-...+|++||+... .+.+++++|..+.|.+++..++.++|..||.+||+.++++++..|++
T Consensus 147 ------------------~~v~FILaTtd~~k-Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~ 207 (702)
T PRK14960 147 ------------------EHVKFLFATTDPQK-LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE 207 (702)
T ss_pred ------------------CCcEEEEEECChHh-hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 12469999998654 34677899999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHH-HHHhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHH
Q 002241 493 YTECDIRSCLNTLQ-FLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLI 571 (948)
Q Consensus 493 ~s~GDIR~aIn~LQ-~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 571 (948)
.++||+|.++|.|. .++...+.++..++.. .+|..|.. .+|+++..|+..+.. ..+..+.++.
T Consensus 208 ~S~GdLRdALnLLDQaIayg~g~IT~edV~~-lLG~~d~e-~IfdLldAI~k~d~~--------------~al~~L~el~ 271 (702)
T PRK14960 208 SAQGSLRDALSLTDQAIAYGQGAVHHQDVKE-MLGLIDRT-IIYDLILAVHQNQRE--------------KVSQLLLQFR 271 (702)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH-HhccCCHH-HHHHHHHHHHhcCHH--------------HHHHHHHHHH
Confidence 99999999999985 4444455566666653 45666665 699999999876421 2233344444
Q ss_pred hccCChH----HHHHHHHHHhh
Q 002241 572 SNRGDYD----VIFDGIHENIL 589 (948)
Q Consensus 572 ~s~gd~d----~i~~~l~eNyl 589 (948)
....+.+ .++.+++++.+
T Consensus 272 ~~g~d~~~~l~~Ll~~lrdlll 293 (702)
T PRK14960 272 YQALDVSLVLDQLISTLHELAL 293 (702)
T ss_pred HhCCCHHHHHHHHHHHHHHHHH
Confidence 4455554 45556666655
No 12
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.95 E-value=9.6e-27 Score=267.34 Aligned_cols=265 Identities=18% Similarity=0.227 Sum_probs=197.6
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
..+.|.+||||++|.|++|++...+.|..|++.+.
T Consensus 4 ~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~r--------------------------------------------- 38 (484)
T PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGK--------------------------------------------- 38 (484)
T ss_pred CcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCC---------------------------------------------
Confidence 46789999999999999999999999999988421
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY----------------- 337 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~----------------- 337 (948)
....+||+||+||||||+|+++|+.+++
T Consensus 39 -----------------------------------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~ 83 (484)
T PRK14956 39 -----------------------------------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83 (484)
T ss_pred -----------------------------------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence 1146999999999999999999999875
Q ss_pred -------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccc
Q 002241 338 -------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKEN 410 (948)
Q Consensus 338 -------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~ 410 (948)
+++|+|+++.++.+.+++.+..+.. .. ..++.+|+||||+|.+. ..++++|++.++...
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~-~p--~~g~~KV~IIDEah~Ls---~~A~NALLKtLEEPp-------- 149 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKF-AP--MGGKYKVYIIDEVHMLT---DQSFNALLKTLEEPP-------- 149 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHh-hh--hcCCCEEEEEechhhcC---HHHHHHHHHHhhcCC--------
Confidence 4889999888877777765544432 22 24578999999999985 468899999886421
Q ss_pred ccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 002241 411 VAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTL 490 (948)
Q Consensus 411 ~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L 490 (948)
...-+|++||+. ...+..++++|..+.|.+++.+.+.++|..+|.+||+.++++++..|
T Consensus 150 --------------------~~viFILaTte~-~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~I 208 (484)
T PRK14956 150 --------------------AHIVFILATTEF-HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWI 208 (484)
T ss_pred --------------------CceEEEeecCCh-hhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 123466777774 44567889999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHH-hcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHH
Q 002241 491 AEYTECDIRSCLNTLQFLD-KKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHS 569 (948)
Q Consensus 491 ~e~s~GDIR~aIn~LQ~~~-~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~ 569 (948)
++.++||+|.+|+.|+.+. ...+.++...+.. .+|.-+ ..-++.++..+.... .....+..+..
T Consensus 209 a~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~-~lg~~~-~~~~~~l~~si~~~d-------------~~~~al~~l~~ 273 (484)
T PRK14956 209 AKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRK-MIGYHG-IEFLTSFIKSLIDPD-------------NHSKSLEILES 273 (484)
T ss_pred HHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHH-HhCCCC-HHHHHHHHHHHHcCC-------------cHHHHHHHHHH
Confidence 9999999999999996543 3333444444432 223222 113344444443321 11235666667
Q ss_pred HHhccCChHHHHHHHHHHhh
Q 002241 570 LISNRGDYDVIFDGIHENIL 589 (948)
Q Consensus 570 ~i~s~gd~d~i~~~l~eNyl 589 (948)
+++...|+..++..+.+.+-
T Consensus 274 l~~~G~d~~~~~~~l~~~~r 293 (484)
T PRK14956 274 LYQEGQDIYKFLWDSIEFTH 293 (484)
T ss_pred HHHcCCCHHHHHHHHHHHHH
Confidence 77777788888877776553
No 13
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=5.6e-26 Score=266.18 Aligned_cols=232 Identities=21% Similarity=0.241 Sum_probs=184.1
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
+-+-|.+||||++|+||+|++...+.|.+|++.|.
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gR--------------------------------------------- 36 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQR--------------------------------------------- 36 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCC---------------------------------------------
Confidence 35679999999999999999999999999998532
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY----------------- 337 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~----------------- 337 (948)
....+||+||+|+||||+|+++|+.+++
T Consensus 37 -----------------------------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 37 -----------------------------------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred -----------------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 1257899999999999999999999875
Q ss_pred ------------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccc
Q 002241 338 ------------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSN 405 (948)
Q Consensus 338 ------------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~ 405 (948)
+++|+++++.++.+.+++.+....... ..++.+|+||||+|.+.. ...+.|++.++...
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P---~~gr~KViIIDEah~Ls~---~AaNALLKTLEEPP--- 152 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP---TAGRFKVYMIDEVHMLTN---HAFNAMLKTLEEPP--- 152 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch---hcCCceEEEEEChHhcCH---HHHHHHHHhhccCC---
Confidence 688999998888888887666554332 246789999999999953 67889999887522
Q ss_pred cccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHH
Q 002241 406 TAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485 (948)
Q Consensus 406 ~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~ 485 (948)
-...+|++||+... .+..++++|..+.|..++.+++.++|..||.+||+.++++
T Consensus 153 -------------------------~~v~FILaTtep~k-LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~e 206 (700)
T PRK12323 153 -------------------------EHVKFILATTDPQK-IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVN 206 (700)
T ss_pred -------------------------CCceEEEEeCChHh-hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHH
Confidence 13568999998663 5577899999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHH-HHhcCccccccccccceeccccccccHHHHHHHHHh
Q 002241 486 ALTTLAEYTECDIRSCLNTLQF-LDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543 (948)
Q Consensus 486 ~L~~L~e~s~GDIR~aIn~LQ~-~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~ 543 (948)
++..|++.++||+|.+++.|+. ++...+.++.+.+.. .+|..|.. .+++++..+..
T Consensus 207 AL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~-~LG~~d~~-~i~~Ll~aL~~ 263 (700)
T PRK12323 207 ALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRG-MLGAIDQS-YLVRLLDALAA 263 (700)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHH-HhCCCCHH-HHHHHHHHHHc
Confidence 9999999999999999999864 443333444333332 34554433 46666666653
No 14
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.94 E-value=8.9e-26 Score=267.48 Aligned_cols=263 Identities=18% Similarity=0.246 Sum_probs=205.4
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+.|.+||||++|+||+|++...+.|.+|++...
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~r---------------------------------------------- 36 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGR---------------------------------------------- 36 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCC----------------------------------------------
Confidence 4679999999999999999999999999988410
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
.++.+||+||+|+||||+|+++|+.+++
T Consensus 37 ----------------------------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 37 ----------------------------------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred ----------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 1257999999999999999999998653
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++|+++++.++.+.+++.+..+ +.... .++.+||||||+|.+. ..+.+.|++.++...
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a-~~~P~--~gk~KVIIIDEad~Ls---~~A~NALLKtLEEPp--------- 147 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENA-QYAPT--AGKYKVYIIDEVHMLS---KSAFNAMLKTLEEPP--------- 147 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHH-Hhhhh--hCCcEEEEEECccccC---HHHHHHHHHHHHhCC---------
Confidence 46789988878877777666443 22222 3467999999999884 367788999887421
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
-...+|++||+... .+..++++|..+.|.+++.+++..+|..||.+||+.++++++..|+
T Consensus 148 -------------------~~v~fILaTtd~~k-L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia 207 (709)
T PRK08691 148 -------------------EHVKFILATTDPHK-VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLG 207 (709)
T ss_pred -------------------CCcEEEEEeCCccc-cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 12568999998664 4566788999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHH
Q 002241 492 EYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSL 570 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 570 (948)
+.++||+|.+++.|+.+.. ..+.++.+++.. .+|..|.. .+|+++..++..+. ...+..+.++
T Consensus 208 ~~A~GslRdAlnLLDqaia~g~g~It~e~V~~-lLG~~d~~-~If~LldAL~~~d~--------------~~al~~l~~L 271 (709)
T PRK08691 208 RAAAGSMRDALSLLDQAIALGSGKVAENDVRQ-MIGAVDKQ-YLYELLTGIINQDG--------------AALLAKAQEM 271 (709)
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHH-HHcccCHH-HHHHHHHHHHcCCH--------------HHHHHHHHHH
Confidence 9999999999999966543 334455555543 34555533 79999999887542 2345666677
Q ss_pred HhccCChHHHHHHHHHHhh
Q 002241 571 ISNRGDYDVIFDGIHENIL 589 (948)
Q Consensus 571 i~s~gd~d~i~~~l~eNyl 589 (948)
+....++..++..|...+-
T Consensus 272 ~~~G~d~~~~l~~L~~~l~ 290 (709)
T PRK08691 272 AACAVGFDNALGELAILLQ 290 (709)
T ss_pred HHhCCCHHHHHHHHHHHHH
Confidence 7778888888887765543
No 15
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=9.8e-26 Score=265.21 Aligned_cols=261 Identities=18% Similarity=0.243 Sum_probs=202.0
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
+.+.|++||||++|+|++|++...+.|.+|+..-
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~---------------------------------------------- 35 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQ---------------------------------------------- 35 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhC----------------------------------------------
Confidence 4578999999999999999999999999998730
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY----------------- 337 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~----------------- 337 (948)
..+..+||+||+|+||||+|+++|+.+++
T Consensus 36 ----------------------------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 36 ----------------------------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred ----------------------------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 01246899999999999999999999865
Q ss_pred -------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccc
Q 002241 338 -------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKEN 410 (948)
Q Consensus 338 -------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~ 410 (948)
+++|+++++.++.+.+++.+..+. ... ..++.+|+||||+|.+.. .+.++|++.++...
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~-~~p--~~~~~kV~iIDE~~~ls~---~a~naLLk~LEepp-------- 147 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIP-YAP--TKGRFKVYLIDEVHMLSG---HSFNALLKTLEEPP-------- 147 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHh-hcc--ccCCcEEEEEEChHhcCH---HHHHHHHHHHhccC--------
Confidence 389999988888888876554433 222 246789999999999854 67889999887532
Q ss_pred ccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 002241 411 VAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTL 490 (948)
Q Consensus 411 ~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L 490 (948)
....+|++|+|... .+.+++++|..++|.+++..++..+|..+|.+||+.++++++..|
T Consensus 148 --------------------~~~~fIlattd~~k-l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~i 206 (509)
T PRK14958 148 --------------------SHVKFILATTDHHK-LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLL 206 (509)
T ss_pred --------------------CCeEEEEEECChHh-chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 13558899988754 455689999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHH-HhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHH
Q 002241 491 AEYTECDIRSCLNTLQFL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHS 569 (948)
Q Consensus 491 ~e~s~GDIR~aIn~LQ~~-~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~ 569 (948)
++.++||+|.++|.|+.+ +...+.++..++.. .+|.-+ ...+|+++..+..... ...+..+..
T Consensus 207 a~~s~GslR~al~lLdq~ia~~~~~It~~~V~~-~lg~~~-~~~i~~ll~al~~~d~--------------~~~l~~~~~ 270 (509)
T PRK14958 207 ARAANGSVRDALSLLDQSIAYGNGKVLIADVKT-MLGTIE-PLLLFDILEALAAKAG--------------DRLLGCVTR 270 (509)
T ss_pred HHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHH-HHCCCC-HHHHHHHHHHHHcCCH--------------HHHHHHHHH
Confidence 999999999999999654 33445566666653 345443 3488999998886532 223445555
Q ss_pred HHhccCChHHHHHHHHH
Q 002241 570 LISNRGDYDVIFDGIHE 586 (948)
Q Consensus 570 ~i~s~gd~d~i~~~l~e 586 (948)
++....++..++..+..
T Consensus 271 l~~~g~~~~~il~~l~~ 287 (509)
T PRK14958 271 LVEQGVDFSNALADLLS 287 (509)
T ss_pred HHHcCCCHHHHHHHHHH
Confidence 66666777666655543
No 16
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.94 E-value=2.3e-25 Score=264.98 Aligned_cols=263 Identities=19% Similarity=0.226 Sum_probs=204.2
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
+-+.|.+||||++|+|++|++.+.+.|.+|++.+.
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~r--------------------------------------------- 36 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQR--------------------------------------------- 36 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCC---------------------------------------------
Confidence 35679999999999999999999999999988521
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY----------------- 337 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~----------------- 337 (948)
.+..+||+||+|+||||+|+++|+.+++
T Consensus 37 -----------------------------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 37 -----------------------------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred -----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 1257899999999999999999999864
Q ss_pred ------------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccc
Q 002241 338 ------------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSN 405 (948)
Q Consensus 338 ------------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~ 405 (948)
+++|+|+++.++.+.+++.+..+. .... .++.+|+||||+|.+.. ...+.|++.++...
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~-~~p~--~g~~KV~IIDEvh~Ls~---~a~NaLLKtLEEPP--- 152 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAV-YKPV--QGRFKVFMIDEVHMLTN---TAFNAMLKTLEEPP--- 152 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHH-hCcc--cCCceEEEEEChhhCCH---HHHHHHHHhcccCC---
Confidence 588999988888888877665433 2222 45789999999999854 57888888886421
Q ss_pred cccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHH
Q 002241 406 TAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485 (948)
Q Consensus 406 ~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~ 485 (948)
...-+|++|+|... .+..++++|..++|.+++.+++..+|..++.++|+.++++
T Consensus 153 -------------------------~~~~fIL~Ttd~~k-il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~ 206 (618)
T PRK14951 153 -------------------------EYLKFVLATTDPQK-VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQ 206 (618)
T ss_pred -------------------------CCeEEEEEECCchh-hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 12348889988664 4566889999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHH-HHhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhH
Q 002241 486 ALTTLAEYTECDIRSCLNTLQF-LDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEF 564 (948)
Q Consensus 486 ~L~~L~e~s~GDIR~aIn~LQ~-~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~ 564 (948)
++..|++.++||+|.+++.|+. ++...+.++...+.. .+|..|.. .+|+++..+...+. ...+
T Consensus 207 AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~~V~~-~Lg~~~~~-~i~~LldaL~~~d~--------------~~al 270 (618)
T PRK14951 207 ALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQ-MLGSVDRS-HVFRLIDALAQGDG--------------RTVV 270 (618)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH-HHcCCCHH-HHHHHHHHHHcCCH--------------HHHH
Confidence 9999999999999999999854 444444555555543 34544433 78888888876542 2344
Q ss_pred HHHHHHHhccCChHHHHHHHHHHh
Q 002241 565 DFLHSLISNRGDYDVIFDGIHENI 588 (948)
Q Consensus 565 ~~l~~~i~s~gd~d~i~~~l~eNy 588 (948)
..+.+++....++..++..+.+.+
T Consensus 271 ~~l~~l~~~G~~~~~il~~l~~~~ 294 (618)
T PRK14951 271 ETADELRLNGLSAASTLEEMAAVL 294 (618)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555566666777777777776554
No 17
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.94 E-value=7.8e-25 Score=244.06 Aligned_cols=290 Identities=23% Similarity=0.334 Sum_probs=214.6
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
+.+.+|+|||||++|.|++|++.....|..|++.+.
T Consensus 2 ~~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~-------------------------------------------- 37 (319)
T PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKN-------------------------------------------- 37 (319)
T ss_pred CccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCC--------------------------------------------
Confidence 457899999999999999999999999999887310
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCC
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDR 348 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~r 348 (948)
.+++||+||||+||||+++++++++ ...++++|+++.+
T Consensus 38 -------------------------------------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 38 -------------------------------------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred -------------------------------------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 1358999999999999999999986 2467899998887
Q ss_pred ChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhcccccc
Q 002241 349 SSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428 (948)
Q Consensus 349 s~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~ 428 (948)
....+...+.+....... ....+.+|||||+|.+.. ...+.|+.+++..
T Consensus 81 ~~~~~~~~i~~~~~~~~~-~~~~~~vviiDe~~~l~~---~~~~~L~~~le~~--------------------------- 129 (319)
T PRK00440 81 GIDVIRNKIKEFARTAPV-GGAPFKIIFLDEADNLTS---DAQQALRRTMEMY--------------------------- 129 (319)
T ss_pred chHHHHHHHHHHHhcCCC-CCCCceEEEEeCcccCCH---HHHHHHHHHHhcC---------------------------
Confidence 777676777666554332 224578999999999853 3455666666421
Q ss_pred ccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 429 ASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 429 ~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
.....+|++||.... .+.+++++|..++|.+++.+++..+|..+|.++|+.++++++..|++.++||+|.++|.|+.+
T Consensus 130 -~~~~~lIl~~~~~~~-l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~ 207 (319)
T PRK00440 130 -SQNTRFILSCNYSSK-IIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAA 207 (319)
T ss_pred -CCCCeEEEEeCCccc-cchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112468889987542 456677889999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHh-ccCChHHHHHHHHHH
Q 002241 509 DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLIS-NRGDYDVIFDGIHEN 587 (948)
Q Consensus 509 ~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-s~gd~d~i~~~l~eN 587 (948)
+.....++.+.+.. .++ .....++|+++..++.... ...+..+..++. ....+..++..++..
T Consensus 208 ~~~~~~it~~~v~~-~~~-~~~~~~i~~l~~~~~~~~~--------------~~a~~~l~~ll~~~g~~~~~i~~~l~~~ 271 (319)
T PRK00440 208 AATGKEVTEEAVYK-ITG-TARPEEIREMIELALNGDF--------------TEAREKLRDLMIDYGLSGEDIIKQIHRE 271 (319)
T ss_pred HHcCCCCCHHHHHH-HhC-CCCHHHHHHHHHHHHcCCH--------------HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87655565555442 222 2333478999998875431 223344444443 345566777788764
Q ss_pred hhhhccCChhHHHHHHHHHHhhhhhHHhH
Q 002241 588 ILQLQYHDPVMLKTVKCLDCLGNSDLMHQ 616 (948)
Q Consensus 588 yl~~~~~D~~l~~~~~a~d~Ls~~D~l~~ 616 (948)
.....| ......++++++...|.-..
T Consensus 272 ~~~~~~---~~~~l~~~~~~~~~~d~~~k 297 (319)
T PRK00440 272 VWSLDI---PEELKVELIDAIGEADFRIT 297 (319)
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHHH
Confidence 433223 34567889999998886543
No 18
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.93 E-value=1.9e-24 Score=243.01 Aligned_cols=288 Identities=15% Similarity=0.185 Sum_probs=204.2
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..+|++||||++|++|+|++...+.|..|++.
T Consensus 2 ~~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~------------------------------------------------ 33 (337)
T PRK12402 2 APLWTEKYRPALLEDILGQDEVVERLSRAVDS------------------------------------------------ 33 (337)
T ss_pred CCchHHhhCCCcHHHhcCCHHHHHHHHHHHhC------------------------------------------------
Confidence 35999999999999999999988888777662
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CCcceecCCCCCC-
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG-----YHVVEVNASDDRS- 349 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG-----~~viEiNaSd~rs- 349 (948)
+ ...++||+||||+||||+|+++|+++. ..++++|+++...
T Consensus 34 -------------------------------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~ 80 (337)
T PRK12402 34 -------------------------------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ 80 (337)
T ss_pred -------------------------------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc
Confidence 0 013689999999999999999999874 3578899876321
Q ss_pred -------------------------hHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcc
Q 002241 350 -------------------------SSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKS 404 (948)
Q Consensus 350 -------------------------~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~ 404 (948)
.+.++..+......... ...+.+|||||+|.+.. ...+.|..+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vlilDe~~~l~~---~~~~~L~~~le~~~-- 153 (337)
T PRK12402 81 GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL--SADYKTILLDNAEALRE---DAQQALRRIMEQYS-- 153 (337)
T ss_pred chhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC--CCCCcEEEEeCcccCCH---HHHHHHHHHHHhcc--
Confidence 01111112122222121 23567999999998843 45566766665311
Q ss_pred ccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCH
Q 002241 405 NTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSS 484 (948)
Q Consensus 405 ~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~ 484 (948)
....+|++|+... ..+.+++++|..+.|.+++.+++..+|..+|.++|+.+++
T Consensus 154 --------------------------~~~~~Il~~~~~~-~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 206 (337)
T PRK12402 154 --------------------------RTCRFIIATRQPS-KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDD 206 (337)
T ss_pred --------------------------CCCeEEEEeCChh-hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1134777776543 2446688899999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhH
Q 002241 485 IALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEF 564 (948)
Q Consensus 485 ~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~ 564 (948)
+++..|++.++||+|.+++.|+.++.....++...+.. .++..+...++|+++..+...+. ...+
T Consensus 207 ~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~~v~~-~~~~~~~~~~i~~l~~ai~~~~~--------------~~a~ 271 (337)
T PRK12402 207 DGLELIAYYAGGDLRKAILTLQTAALAAGEITMEAAYE-ALGDVGTDEVIESLLDAAEAGDF--------------TDAR 271 (337)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HhCCCCCHHHHHHHHHHHHcCCH--------------HHHH
Confidence 99999999999999999999999886655666665553 33332334589999998876531 1233
Q ss_pred HHHHHHH-hccCChHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhHHhHH
Q 002241 565 DFLHSLI-SNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMHQY 617 (948)
Q Consensus 565 ~~l~~~i-~s~gd~d~i~~~l~eNyl~~~~~D~~l~~~~~a~d~Ls~~D~l~~~ 617 (948)
..+..++ +....+..++..++..... +|. .....+++++++..|.....
T Consensus 272 ~~l~~l~~~~g~~~~~i~~~l~~~~~~-~~~---~~~l~~~~~~l~~~d~~lk~ 321 (337)
T PRK12402 272 KTLDDLLIDEGLSGGEVLEELLRVARS-RYR---GDNLARLHRLAADADARLTD 321 (337)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHH-HCC---HHHHHHHHHHHHHHHHHHHc
Confidence 3444444 4445677777777765433 343 45677999999999986553
No 19
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.93 E-value=2.3e-24 Score=225.71 Aligned_cols=270 Identities=20% Similarity=0.245 Sum_probs=203.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CC----------------------------CcceecCCCCCChH--HHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-GY----------------------------HVVEVNASDDRSSS--TIENKILDV 360 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-G~----------------------------~viEiNaSd~rs~~--~~~~~I~~~ 360 (948)
.++|+|||.|.||-|.+-++-+|+ |. .-+|+|+||....+ .+.+.|.+.
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 689999999999999999999985 41 34689999987654 678889999
Q ss_pred Hhhhccc--ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEE
Q 002241 361 VQMNSVM--ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICI 438 (948)
Q Consensus 361 ~~~~sv~--~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~i 438 (948)
.|+..+. .....+||||-|+|.++.+.+.+++..++-+. .++.+|++
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-------------------------------~~~RlIl~ 163 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-------------------------------SNCRLILV 163 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-------------------------------cCceEEEE
Confidence 9887665 23457899999999997755544444444332 24779999
Q ss_pred ecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCcccccc
Q 002241 439 CNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVM 518 (948)
Q Consensus 439 cNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~~~~ 518 (948)
||.... .+.|+|++|..|+++.|+.+++...|..+|++||+.++.+.+..||+.|+||+|.||-.|+.++.++......
T Consensus 164 cns~Sr-iIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~ 242 (351)
T KOG2035|consen 164 CNSTSR-IIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTAN 242 (351)
T ss_pred ecCccc-chhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcccccccc
Confidence 999864 7889999999999999999999999999999999999999999999999999999999999998775543221
Q ss_pred ccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHhhhhccCChhH
Q 002241 519 DIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQLQYHDPVM 598 (948)
Q Consensus 519 ~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~eNyl~~~~~D~~l 598 (948)
. +.+-.-|+..-+.++.+.|.+.+... ..-+--..|++++.+|..+..|+.++.++++.-. |+.+
T Consensus 243 ~---~~i~~~dWe~~i~e~a~~i~~eQs~~----------~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~--d~~~ 307 (351)
T KOG2035|consen 243 S---QVIPKPDWEIYIQEIARVILKEQSPA----------KLLEVRGRLYELLSHCIPPNTILKELLEELLLKC--DTQL 307 (351)
T ss_pred C---CCCCCccHHHHHHHHHHHHHhccCHH----------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC--Cchh
Confidence 1 23344577777777777777765432 1234457889999999999999999999998622 4322
Q ss_pred HHHHHHHHHhhhhhHHhHHHHhcC--CccccccchhH
Q 002241 599 LKTVKCLDCLGNSDLMHQYIMRTQ--QMPLYVYQPPL 633 (948)
Q Consensus 599 ~~~~~a~d~Ls~~D~l~~~i~~~Q--~~~L~~Y~~~~ 633 (948)
..+-+.++--+..|+.-+| -|.|-.|...+
T Consensus 308 -----k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~f 339 (351)
T KOG2035|consen 308 -----KLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKF 339 (351)
T ss_pred -----HHHHHHHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 2233334555666766544 35555554443
No 20
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=8.3e-25 Score=254.03 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=197.8
Q ss_pred cchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCC
Q 002241 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNG 277 (948)
Q Consensus 198 LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~ 277 (948)
-|..||||++|.||+|++...+.|.++++.
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~-------------------------------------------------- 31 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTL-------------------------------------------------- 31 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHc--------------------------------------------------
Confidence 488999999999999999999988777662
Q ss_pred CccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 002241 278 NFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG--------------------- 336 (948)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG--------------------- 336 (948)
|+ .+..+||+||+|+||||+|+++|+.++
T Consensus 32 -----------------------------~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 32 -----------------------------NK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred -----------------------------CC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 00 126899999999999999999999652
Q ss_pred ---CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccc
Q 002241 337 ---YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAK 413 (948)
Q Consensus 337 ---~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~ 413 (948)
.+|+|+|+++.++.+.++..+..+. ...+ .++.+|+||||+|.+.. .++++|++.++....
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~-~~P~--~~~~KVvIIDEah~Ls~---~A~NaLLK~LEePp~---------- 145 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSC-YLPI--SSKFKVYIIDEVHMLSN---SAFNALLKTLEEPAP---------- 145 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHH-hccc--cCCceEEEEeChHhCCH---HHHHHHHHHHhCCCC----------
Confidence 4789999999898888887665543 3332 35789999999999853 678899999875321
Q ss_pred cCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 002241 414 EDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493 (948)
Q Consensus 414 ~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~ 493 (948)
..-+|++|++... ....++++|..+.|.+++..++..+|..+|.+||+.++++++..|++.
T Consensus 146 ------------------~v~fIlatte~~K-l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~ 206 (491)
T PRK14964 146 ------------------HVKFILATTEVKK-IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAEN 206 (491)
T ss_pred ------------------CeEEEEEeCChHH-HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2347888877653 456789999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHh
Q 002241 494 TECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLIS 572 (948)
Q Consensus 494 s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 572 (948)
++||+|.+++.|+.++. ..+.++.+.+.. .+|..|.. .+|+++..|+..+. ...+..+.+++.
T Consensus 207 s~GslR~alslLdqli~y~~~~It~e~V~~-llg~~~~~-~If~L~~aI~~~d~--------------~~Al~~l~~Ll~ 270 (491)
T PRK14964 207 SSGSMRNALFLLEQAAIYSNNKISEKSVRD-LLGCVDKH-ILEDLVEAILLGDA--------------QSALNVFRELCN 270 (491)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCCHHHHHH-HHccCCHH-HHHHHHHHHHCCCH--------------HHHHHHHHHHHh
Confidence 99999999999977654 334566555543 34555544 58999998887642 234444555554
Q ss_pred ccCChHHHHHHHHH
Q 002241 573 NRGDYDVIFDGIHE 586 (948)
Q Consensus 573 s~gd~d~i~~~l~e 586 (948)
.+++..++..+.+
T Consensus 271 -~g~~~~i~~~l~~ 283 (491)
T PRK14964 271 -TSNPVIILEGMLQ 283 (491)
T ss_pred -cCCHHHHHHHHHH
Confidence 3676666555543
No 21
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.93 E-value=1.3e-24 Score=266.55 Aligned_cols=260 Identities=18% Similarity=0.219 Sum_probs=194.9
Q ss_pred cchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCC
Q 002241 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNG 277 (948)
Q Consensus 198 LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~ 277 (948)
.|.+||||++|.||+|++...+.|.+||..- +
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------------------------------------r------- 35 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSG-----------------------------------------R------- 35 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------------------------------------C-------
Confidence 3669999999999999999999999998730 0
Q ss_pred CccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 002241 278 NFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG--------------------- 336 (948)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG--------------------- 336 (948)
..+.+||+||+||||||+|++||+.++
T Consensus 36 --------------------------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 36 --------------------------------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred --------------------------------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 125699999999999999999999985
Q ss_pred -----CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 337 -----YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 337 -----~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
++|++||+.+..+.+.+++.+..+. ...+ .++.+|+||||+|.|.. ...+.|+++|+....
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~-~~p~--~~~~KV~IIDEad~lt~---~a~NaLLK~LEEpP~-------- 149 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAF-FAPA--ESRYKIFIIDEAHMVTP---QGFNALLKIVEEPPE-------- 149 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHH-hchh--cCCceEEEEechhhcCH---HHHHHHHHHHhCCCC--------
Confidence 3578899888778888876544333 2222 46789999999999964 788999999975321
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
..-+||+|++.. ..+..++++|.++.|.+++.+.+..+|..+|.+||+.++++++..|+
T Consensus 150 --------------------~~~fIl~tt~~~-kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa 208 (824)
T PRK07764 150 --------------------HLKFIFATTEPD-KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVI 208 (824)
T ss_pred --------------------CeEEEEEeCChh-hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 244788887765 35677999999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhc--CccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHH
Q 002241 492 EYTECDIRSCLNTLQFLDKK--KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHS 569 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~~--~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~ 569 (948)
..++||+|.+++.|+-++.. ...++...+. .++|..+. ..+|++++.+...+. ...+..+..
T Consensus 209 ~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~-allg~~~~-~~I~~lidAL~~~D~--------------a~al~~l~~ 272 (824)
T PRK07764 209 RAGGGSVRDSLSVLDQLLAGAGPEGVTYERAV-ALLGVTDS-ALIDEAVDALAAGDG--------------AALFGTVDR 272 (824)
T ss_pred HHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHH-HHhcCCCH-HHHHHHHHHHHcCCH--------------HHHHHHHHH
Confidence 99999999999999887643 2334444443 23343332 367777777764321 123344444
Q ss_pred HHhccCChHHHHHHHHHHh
Q 002241 570 LISNRGDYDVIFDGIHENI 588 (948)
Q Consensus 570 ~i~s~gd~d~i~~~l~eNy 588 (948)
++....++..|+..|.+.|
T Consensus 273 Li~~G~dp~~~L~~LL~~f 291 (824)
T PRK07764 273 VIEAGHDPRRFAEDLLERL 291 (824)
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 5555556666666666554
No 22
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=2.2e-24 Score=255.92 Aligned_cols=259 Identities=18% Similarity=0.205 Sum_probs=193.3
Q ss_pred chhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCCC
Q 002241 199 WVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGN 278 (948)
Q Consensus 199 WvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~~ 278 (948)
|.+||||++|+|++|++...+.|.+|++.-
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~-------------------------------------------------- 32 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAG-------------------------------------------------- 32 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcC--------------------------------------------------
Confidence 559999999999999999999999998730
Q ss_pred ccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------------------
Q 002241 279 FRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG---------------------- 336 (948)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG---------------------- 336 (948)
.....+||+||+||||||+|+++|+.++
T Consensus 33 ------------------------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 33 ------------------------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred ------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 0125689999999999999999999865
Q ss_pred ----CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccccc
Q 002241 337 ----YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVA 412 (948)
Q Consensus 337 ----~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~ 412 (948)
.+|+|+++++.++.+.+++.+..+. .... .++.+|+||||+|.+.. ++.++|++.++....
T Consensus 83 ~~~~~dvieidaas~~gvd~iRel~~~~~-~~P~--~~~~KVvIIDEah~Lt~---~A~NALLK~LEEpp~--------- 147 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAF-YAPA--QSRYRIFIVDEAHMVTT---AGFNALLKIVEEPPE--------- 147 (584)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHH-hhhh--cCCceEEEEECCCcCCH---HHHHHHHHHHhcCCC---------
Confidence 3588999988888888876554433 2222 35788999999999854 688999999975321
Q ss_pred ccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 002241 413 KEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492 (948)
Q Consensus 413 ~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e 492 (948)
..-+|++|++.. ..+..++++|..+.|.+++.+.+.++|..||.++|+.++++++..|++
T Consensus 148 -------------------~~~fIL~tte~~-kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 148 -------------------HLIFIFATTEPE-KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred -------------------CeEEEEEeCChH-hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 244788887764 456778999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHhc--CccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHH
Q 002241 493 YTECDIRSCLNTLQFLDKK--KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSL 570 (948)
Q Consensus 493 ~s~GDIR~aIn~LQ~~~~~--~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 570 (948)
.++||+|.++|.|+.++.. .+.++.+.+.. .+|..+ ...+|+++..+..... ...+..+.++
T Consensus 208 ~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~-llg~~~-~~~i~~lv~al~~~d~--------------~~al~~l~~l 271 (584)
T PRK14952 208 AGGGSPRDTLSVLDQLLAGAADTHVTYQRALG-LLGATD-VALIDDAVDALAADDA--------------AALFGAIESV 271 (584)
T ss_pred HcCCCHHHHHHHHHHHHhccCCCCcCHHHHHH-HHCCCC-HHHHHHHHHHHHcCCH--------------HHHHHHHHHH
Confidence 9999999999999987654 23444444432 234333 3367777776665331 2233444444
Q ss_pred HhccCChHHHHHHHHHHh
Q 002241 571 ISNRGDYDVIFDGIHENI 588 (948)
Q Consensus 571 i~s~gd~d~i~~~l~eNy 588 (948)
+....++..++..|...|
T Consensus 272 ~~~g~d~~~~l~~L~~~~ 289 (584)
T PRK14952 272 IDAGHDPRRFATDLLERF 289 (584)
T ss_pred HHcCCCHHHHHHHHHHHH
Confidence 555556665555554443
No 23
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.93 E-value=5.2e-24 Score=250.58 Aligned_cols=232 Identities=21% Similarity=0.258 Sum_probs=180.0
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+.|++||||++|+|++|++...+.|.++++.+.
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~r---------------------------------------------- 36 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQK---------------------------------------------- 36 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCC----------------------------------------------
Confidence 4679999999999999999999999999888421
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
....+||+||+|+||||+|+++|+.+++
T Consensus 37 ----------------------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 37 ----------------------------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 1256899999999999999999998753
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++++++....+.+.++..+..+ ..... .++.+|+||||+|.+. .++++.|++.++....
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~-~~~p~--~g~~kViIIDEa~~ls---~~a~naLLK~LEepp~-------- 148 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNI-QYMPS--QGRYKVYLIDEVHMLS---KQSFNALLKTLEEPPE-------- 148 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHH-Hhhhh--cCCcEEEEEechhhcc---HHHHHHHHHHHhcCCC--------
Confidence 67788886666666666555443 32222 3577899999999985 3688899999975321
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
...+|++|++.. ..+..++++|.++.|.+++.+++..+|..+|.++|+.+++.++..|+
T Consensus 149 --------------------~v~fIL~Ttd~~-kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia 207 (546)
T PRK14957 149 --------------------YVKFILATTDYH-KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA 207 (546)
T ss_pred --------------------CceEEEEECChh-hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 245888998854 35567899999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhc
Q 002241 492 EYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQK 544 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~ 544 (948)
+.++||+|.++|.|+.++.- .+.++.+.+.. .+|..+ ...+|+++..+...
T Consensus 208 ~~s~GdlR~alnlLek~i~~~~~~It~~~V~~-~l~~~~-~~~v~~ll~Al~~~ 259 (546)
T PRK14957 208 YHAKGSLRDALSLLDQAISFCGGELKQAQIKQ-MLGIID-SEEVYSIINAIIDN 259 (546)
T ss_pred HHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH-HHccCC-HHHHHHHHHHHHcC
Confidence 99999999999999876532 23344433332 233332 23578888877654
No 24
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=3.9e-24 Score=250.29 Aligned_cols=264 Identities=20% Similarity=0.267 Sum_probs=202.6
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
++.+.|.+||||++|.|++|++...+.|..++..
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~---------------------------------------------- 39 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILN---------------------------------------------- 39 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHc----------------------------------------------
Confidence 4578999999999999999999999988776663
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------------
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY---------------- 337 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~---------------- 337 (948)
......+||+|||||||||+|+++|+.+++
T Consensus 40 ----------------------------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 40 ----------------------------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ----------------------------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 001257999999999999999999998754
Q ss_pred ------------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccc
Q 002241 338 ------------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSN 405 (948)
Q Consensus 338 ------------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~ 405 (948)
+++|+++++..+.+.+++.+..+.. ..+ .++.+|+||||+|.+. ..+++.|++.++....
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~-~P~--~~~~KVvIIDEa~~Ls---~~a~naLLk~LEepp~-- 157 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY-KPL--QGKHKIFIIDEVHMLS---KGAFNALLKTLEEPPP-- 157 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHh-ccc--cCCcEEEEEEChhhcC---HHHHHHHHHHHhhcCC--
Confidence 5788998887888888876655433 332 3578999999999884 3678889888874211
Q ss_pred cccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHH
Q 002241 406 TAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485 (948)
Q Consensus 406 ~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~ 485 (948)
..-+|++|++.. .....++++|..+.|.+++.+++..+|..+|.+||+.++++
T Consensus 158 --------------------------~~vfI~aTte~~-kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~e 210 (507)
T PRK06645 158 --------------------------HIIFIFATTEVQ-KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIE 210 (507)
T ss_pred --------------------------CEEEEEEeCChH-HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 133677777654 34567888999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc----CccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCch
Q 002241 486 ALTTLAEYTECDIRSCLNTLQFLDKK----KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVS 561 (948)
Q Consensus 486 ~L~~L~e~s~GDIR~aIn~LQ~~~~~----~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~ 561 (948)
++..|++.++||+|.+++.|+.++.- ...++..++.. .+|.-+.. .+|++++.|+..+. .
T Consensus 211 AL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~-llg~~~~~-~if~L~~ai~~~d~--------------~ 274 (507)
T PRK06645 211 ALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQ-MLGLVDSS-VIIEFVEYIIHRET--------------E 274 (507)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHH-HHCCCCHH-HHHHHHHHHHcCCH--------------H
Confidence 99999999999999999999877432 12455555542 34554443 89999999887542 2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHh
Q 002241 562 NEFDFLHSLISNRGDYDVIFDGIHENI 588 (948)
Q Consensus 562 ~~~~~l~~~i~s~gd~d~i~~~l~eNy 588 (948)
..+..+.+++....++..++..+.+.+
T Consensus 275 ~Al~~l~~L~~~g~~~~~~l~~l~~~~ 301 (507)
T PRK06645 275 KAINLINKLYGSSVNLEIFIESVSDFI 301 (507)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345666667777778887776555443
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=3.1e-24 Score=258.52 Aligned_cols=198 Identities=20% Similarity=0.243 Sum_probs=163.5
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+.|.+||||++|.|++|++...+.|.+|+..+.
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~r---------------------------------------------- 36 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQR---------------------------------------------- 36 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCC----------------------------------------------
Confidence 4679999999999999999999999999887411
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYH----------------- 338 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~----------------- 338 (948)
....+||+|||||||||+|+++|+.+++.
T Consensus 37 ----------------------------------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 37 ----------------------------------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 12567999999999999999999998653
Q ss_pred -------cceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 339 -------VVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 339 -------viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
++|+++++.++.+.++..+..+.. .. ..++.+|+||||+|.|. ..+++.|++.++....
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~-~P--~~gk~KViIIDEAh~LT---~eAqNALLKtLEEPP~-------- 148 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQY-RP--SRGRFKVYLIDEVHMLS---RSSFNALLKTLEEPPE-------- 148 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHh-hh--hcCCcEEEEEechHhcC---HHHHHHHHHHHhccCC--------
Confidence 477888776777777766554432 22 14678999999999994 4788999999975321
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
...+|++||+... .+..++++|.+++|.+++.+++..+|..+|..+++.++++++..|+
T Consensus 149 --------------------~vrFILaTTe~~k-Ll~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA 207 (944)
T PRK14949 149 --------------------HVKFLLATTDPQK-LPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA 207 (944)
T ss_pred --------------------CeEEEEECCCchh-chHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2447888888664 4567888999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHH
Q 002241 492 EYTECDIRSCLNTLQFL 508 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~ 508 (948)
..++||+|.+++.|+.+
T Consensus 208 ~~S~Gd~R~ALnLLdQa 224 (944)
T PRK14949 208 KAANGSMRDALSLTDQA 224 (944)
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 99999999999999643
No 26
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.92 E-value=1.4e-23 Score=234.30 Aligned_cols=282 Identities=22% Similarity=0.284 Sum_probs=197.2
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
.+..+|++||||++|+|++|++.....+..|++. |
T Consensus 6 ~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-------------------------------------------~-- 40 (316)
T PHA02544 6 PNEFMWEQKYRPSTIDECILPAADKETFKSIVKK-------------------------------------------G-- 40 (316)
T ss_pred CCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-------------------------------------------C--
Confidence 4678999999999999999999999999999873 0
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHH
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTI 353 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~ 353 (948)
. .++++||+||||+||||+|+++|++++.+++++|+++.+ .+.+
T Consensus 41 ----------------------------------~-~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~-~~~i 84 (316)
T PHA02544 41 ----------------------------------R-IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCR-IDFV 84 (316)
T ss_pred ----------------------------------C-CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCccc-HHHH
Confidence 0 125788899999999999999999999999999999843 5555
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCC
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLR 433 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~r 433 (948)
++.+..+...... ...+++|||||+|.+.. ......|..+++.. ...+
T Consensus 85 ~~~l~~~~~~~~~--~~~~~vliiDe~d~l~~--~~~~~~L~~~le~~----------------------------~~~~ 132 (316)
T PHA02544 85 RNRLTRFASTVSL--TGGGKVIIIDEFDRLGL--ADAQRHLRSFMEAY----------------------------SKNC 132 (316)
T ss_pred HHHHHHHHHhhcc--cCCCeEEEEECcccccC--HHHHHHHHHHHHhc----------------------------CCCc
Confidence 5556555544332 24578999999998732 23445555555421 1236
Q ss_pred cEEEEecCCCchhhhhhccceEEEEecCcCHHHHH-------HHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 002241 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVV-------SRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506 (948)
Q Consensus 434 PII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~-------~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ 506 (948)
++|++||... ..+.+++++|..+.|..|+.+++. .++..+|.++|+.++++++..|++.+.||+|.+++.|+
T Consensus 133 ~~Ilt~n~~~-~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~ 211 (316)
T PHA02544 133 SFIITANNKN-GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQ 211 (316)
T ss_pred eEEEEcCChh-hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7999999764 355678889999999999887665 44556788899999999999999999999999999999
Q ss_pred HHHhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHHH
Q 002241 507 FLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHE 586 (948)
Q Consensus 507 ~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~e 586 (948)
.++.. ..++..++.. +. ...+++++..+ ...... .+..+...+ ..+++.++.++++
T Consensus 212 ~~~~~-~~i~~~~l~~--~~----~~~~~~l~~~l-~~~d~~--------------~~~~~~~~~--~~~~~~~l~~~~~ 267 (316)
T PHA02544 212 RYAST-GKIDAGILSE--VT----NSDIDDVVEAL-KAKDFK--------------AVRALAPNY--ANDYASFVGKLYD 267 (316)
T ss_pred HHHcc-CCCCHHHHHH--hh----HHHHHHHHHHH-HcCCHH--------------HHHHHHHHh--ccCHHHHHHHHHH
Confidence 87643 2233222221 00 12344444433 211111 011112112 4567888999988
Q ss_pred HhhhhccCChhHHHHHHHHHHhhhhhHHhHH
Q 002241 587 NILQLQYHDPVMLKTVKCLDCLGNSDLMHQY 617 (948)
Q Consensus 587 Nyl~~~~~D~~l~~~~~a~d~Ls~~D~l~~~ 617 (948)
+... .+ + ......+++.++.+|.....
T Consensus 268 ~~~~-~~-~--~~~~~~~~~~l~~~~~~~~~ 294 (316)
T PHA02544 268 ELYP-QV-T--PPSIIRLIEIIGENNQYHGF 294 (316)
T ss_pred HHHH-hC-C--HHHHHHHHHHHHHHHHHHHh
Confidence 8765 33 2 34566788888887766544
No 27
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=3.3e-24 Score=255.57 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=163.1
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+.|.+||||++|+|++|++...+.|.+.+..
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~------------------------------------------------ 34 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDL------------------------------------------------ 34 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc------------------------------------------------
Confidence 46799999999999999999999988776652
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
| .....+||+||+|+||||+|+++|+.+++
T Consensus 35 -------------------------------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 35 -------------------------------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred -------------------------------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 0 01256899999999999999999999865
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++|+++++..+.+.+++.+..+ +.... .++.+|+||||+|.+.. .+.++|++.++....
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~-~~~p~--~g~~KV~IIDEah~Ls~---~a~NALLKtLEEPp~-------- 148 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNV-QYAPA--RGRFKVYLIDEVHMLSR---HSFNALLKTLEEPPE-------- 148 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHH-Hhhhh--cCCCEEEEEechHhCCH---HHHHHHHHHHHcCCC--------
Confidence 57889988766677777655443 32221 46789999999999853 688999999985321
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
...+|++|++... .+..++++|..++|.+++.+++..+|..+|..||+.+++.++..|+
T Consensus 149 --------------------~v~FIL~Tt~~~k-Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia 207 (647)
T PRK07994 149 --------------------HVKFLLATTDPQK-LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLA 207 (647)
T ss_pred --------------------CeEEEEecCCccc-cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2458888988663 4567888999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHH
Q 002241 492 EYTECDIRSCLNTLQFL 508 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~ 508 (948)
..++||+|.+++.|+.+
T Consensus 208 ~~s~Gs~R~Al~lldqa 224 (647)
T PRK07994 208 RAADGSMRDALSLTDQA 224 (647)
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 99999999999999654
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=4.9e-24 Score=250.37 Aligned_cols=262 Identities=18% Similarity=0.223 Sum_probs=195.5
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
+.|| +||||++|+||+|++...+.|..|+..+.
T Consensus 2 ~~l~-~KyRP~~~~dvvGq~~v~~~L~~~i~~~~---------------------------------------------- 34 (504)
T PRK14963 2 SALY-QRARPITFDEVVGQEHVKEVLLAALRQGR---------------------------------------------- 34 (504)
T ss_pred chHH-HhhCCCCHHHhcChHHHHHHHHHHHHcCC----------------------------------------------
Confidence 3577 99999999999999999999999888421
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
....+||+||||+||||+|+++|+++.+
T Consensus 35 ----------------------------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 35 ----------------------------------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR 80 (504)
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence 1146799999999999999999998753
Q ss_pred -----CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccccc
Q 002241 338 -----HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVA 412 (948)
Q Consensus 338 -----~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~ 412 (948)
+|+++|+++.++.+.+++. .+.+....+ .+.+.||||||+|.+. ...++.|++.++....
T Consensus 81 ~~~h~dv~el~~~~~~~vd~iR~l-~~~~~~~p~--~~~~kVVIIDEad~ls---~~a~naLLk~LEep~~--------- 145 (504)
T PRK14963 81 RGAHPDVLEIDAASNNSVEDVRDL-REKVLLAPL--RGGRKVYILDEAHMMS---KSAFNALLKTLEEPPE--------- 145 (504)
T ss_pred cCCCCceEEecccccCCHHHHHHH-HHHHhhccc--cCCCeEEEEECccccC---HHHHHHHHHHHHhCCC---------
Confidence 4889999888877777664 344433332 3578899999999874 3677888888764211
Q ss_pred ccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 002241 413 KEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492 (948)
Q Consensus 413 ~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e 492 (948)
..-+|++||... .....++++|..+.|.+++.+++..+|..+|.++|+.++++++..|++
T Consensus 146 -------------------~t~~Il~t~~~~-kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~ 205 (504)
T PRK14963 146 -------------------HVIFILATTEPE-KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVAR 205 (504)
T ss_pred -------------------CEEEEEEcCChh-hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 123667777653 233457789999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHh
Q 002241 493 YTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLIS 572 (948)
Q Consensus 493 ~s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 572 (948)
.++||+|.++|.||.++.....++.+.+.. .+|.. ....+|+++..+...+ ....+..+.+++.
T Consensus 206 ~s~GdlR~aln~Lekl~~~~~~It~~~V~~-~l~~~-~~~~if~Li~al~~~d--------------~~~Al~~l~~Ll~ 269 (504)
T PRK14963 206 LADGAMRDAESLLERLLALGTPVTRKQVEE-ALGLP-PQERLRGIAAALAQGD--------------AAEALSGAAQLYR 269 (504)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHCCC-cHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHH
Confidence 999999999999999876544555544442 23332 2347888888876543 1234555556666
Q ss_pred ccCChHHHHHHHHHHhh
Q 002241 573 NRGDYDVIFDGIHENIL 589 (948)
Q Consensus 573 s~gd~d~i~~~l~eNyl 589 (948)
...++..++..++..+.
T Consensus 270 ~G~~~~~Il~~L~~~~r 286 (504)
T PRK14963 270 DGFAARTLVEGLLEAFR 286 (504)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 65666677666665553
No 29
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=1.3e-23 Score=239.22 Aligned_cols=262 Identities=19% Similarity=0.247 Sum_probs=188.0
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+.|++||||++|+|++|++...+.+.+++..-
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~----------------------------------------------- 35 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLG----------------------------------------------- 35 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcC-----------------------------------------------
Confidence 467999999999999999999999888777620
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
..+..+||+||||+||||+|+++|+++++
T Consensus 36 ---------------------------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 36 ---------------------------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred ---------------------------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 01256899999999999999999999753
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++++++++....+.++..+.. +.... ..++.+|+||||+|.+.. .+++.|++.++....
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~-~~~~p--~~~~~kviIIDEa~~l~~---~a~naLLk~lEe~~~-------- 148 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDN-IYYSP--SKSRFKVYLIDEVHMLSR---HSFNALLKTLEEPPQ-------- 148 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHH-HhcCc--ccCCceEEEEEChhhcCH---HHHHHHHHHHhcCCC--------
Confidence 4667777654455555544333 22221 135678999999999843 567888888864211
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
...+|++|++.. ..+.+++++|..+.|.+++.+++.++|..++.++|+.++++++..|+
T Consensus 149 --------------------~~~fIl~t~~~~-~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia 207 (363)
T PRK14961 149 --------------------HIKFILATTDVE-KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIA 207 (363)
T ss_pred --------------------CeEEEEEcCChH-hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 234888888864 34567888999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHH
Q 002241 492 EYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSL 570 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 570 (948)
+.++||+|.++|.|+.++.- .+.++...+.. .+|.. ....+|+++..+...+. ...+..+..+
T Consensus 208 ~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~-~l~~~-~~~~i~~l~~ai~~~~~--------------~~~~~~~~~l 271 (363)
T PRK14961 208 YHAHGSMRDALNLLEHAINLGKGNINIKNVTD-MLGLL-NEKQSFLLTDALLKKDS--------------KKTMLLLNKI 271 (363)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH-HHCCC-CHHHHHHHHHHHHcCCH--------------HHHHHHHHHH
Confidence 99999999999999876533 33444444432 23333 23378888888776432 1233334444
Q ss_pred HhccCChHHHHHHHHHHh
Q 002241 571 ISNRGDYDVIFDGIHENI 588 (948)
Q Consensus 571 i~s~gd~d~i~~~l~eNy 588 (948)
+....++..++..+..-|
T Consensus 272 ~~~g~~~~~il~~l~~~~ 289 (363)
T PRK14961 272 SSIGIEWENILIEMLRFL 289 (363)
T ss_pred HHcCCCHHHHHHHHHHHH
Confidence 444555555555554433
No 30
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=3.6e-24 Score=253.47 Aligned_cols=231 Identities=23% Similarity=0.289 Sum_probs=178.9
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+.|.+||||++|+||+|++...+.+.+|+..+.
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~---------------------------------------------- 36 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQR---------------------------------------------- 36 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCC----------------------------------------------
Confidence 4679999999999999999999999999988522
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
.+..+||+||+|+||||+|+++|+.+++
T Consensus 37 ----------------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 37 ----------------------------------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred ----------------------------------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 1256899999999999999999999865
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++++++++..+.+.+++.+..+ ..... .++.+|+||||+|.+.. ++.+.|++.++...
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~-~~~p~--~~~~kVvIIDEad~ls~---~a~naLLK~LEepp--------- 147 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNA-QYAPT--RGRFKVYIIDEVHMLSK---SAFNAMLKTLEEPP--------- 147 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHH-hhCcc--cCCceEEEEcCcccCCH---HHHHHHHHHHhCCC---------
Confidence 46788887766777777555443 32222 45789999999999853 67889999987522
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
-...+|++|++... .+..++++|..+.|.+++.+++.++|..+|.+||+.+++.++..|+
T Consensus 148 -------------------~~~~fIL~t~d~~k-il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la 207 (527)
T PRK14969 148 -------------------EHVKFILATTDPQK-IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLA 207 (527)
T ss_pred -------------------CCEEEEEEeCChhh-CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12468999988653 3446888999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHh
Q 002241 492 EYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~ 543 (948)
+.++||+|.+++.|+.+.. ..+.++..++.. .+|..|. ..+|+++..+..
T Consensus 208 ~~s~Gslr~al~lldqai~~~~~~I~~~~v~~-~~~~~~~-~~i~~ll~al~~ 258 (527)
T PRK14969 208 RAAAGSMRDALSLLDQAIAYGGGTVNESEVRA-MLGAIDQ-DYLFALLEALLA 258 (527)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH-HHCCCCH-HHHHHHHHHHHc
Confidence 9999999999999975543 333444443332 2344442 257777776664
No 31
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=7.5e-24 Score=250.43 Aligned_cols=231 Identities=16% Similarity=0.237 Sum_probs=175.0
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
+.+.|++||||++|+||+|++.+++.|.++++...
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~r--------------------------------------------- 36 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENR--------------------------------------------- 36 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCC---------------------------------------------
Confidence 56789999999999999999999998888887310
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYH---------------- 338 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~---------------- 338 (948)
....+||+||+|+||||+|+++|+.+++.
T Consensus 37 -----------------------------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 37 -----------------------------------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred -----------------------------------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 12579999999999999999999998652
Q ss_pred --------cceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccc
Q 002241 339 --------VVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKEN 410 (948)
Q Consensus 339 --------viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~ 410 (948)
++++++++.++.+.++. |.+.+..... .++.+||||||+|.+. ...++.|++.++...
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~--~g~~kVIIIDEad~Lt---~~a~naLLk~LEEP~-------- 147 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPM--EGRYKVFIIDEAHMLT---REAFNALLKTLEEPP-------- 147 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHH-HHHHHHhhhh--cCCceEEEEEChHhCC---HHHHHHHHHHhhccC--------
Confidence 78899887777777765 4444443332 3567899999999985 356788888886421
Q ss_pred ccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 002241 411 VAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTL 490 (948)
Q Consensus 411 ~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L 490 (948)
....+|++||+... .+..++++|.++.|.+++.+++..+|..+|.++++.++++++..|
T Consensus 148 --------------------~~~ifILaTt~~~k-ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lI 206 (624)
T PRK14959 148 --------------------ARVTFVLATTEPHK-FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLI 206 (624)
T ss_pred --------------------CCEEEEEecCChhh-hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 12447888887543 345678899999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHH
Q 002241 491 AEYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIF 542 (948)
Q Consensus 491 ~e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If 542 (948)
++.++||+|.+|+.|+.+.. ....++.+.+.. .+|.-+ ...+|+++..+.
T Consensus 207 A~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~-~lg~~~-~e~vfeLl~AL~ 257 (624)
T PRK14959 207 ARRAAGSVRDSMSLLGQVLALGESRLTIDGARG-VLGLAG-QELFLRLMEALA 257 (624)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH-HhCCCC-HHHHHHHHHHHh
Confidence 99999999999999975542 223344333332 223222 224666666654
No 32
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=2.4e-23 Score=243.85 Aligned_cols=232 Identities=23% Similarity=0.274 Sum_probs=183.7
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
+-|++||||++|+|++|++...+.|..|++...
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~gr----------------------------------------------- 34 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNR----------------------------------------------- 34 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCC-----------------------------------------------
Confidence 569999999999999999999999999987411
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--------------------
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG-------------------- 336 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG-------------------- 336 (948)
.++.+|||||+|+||||+|+++|+.+.
T Consensus 35 ---------------------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 35 ---------------------------------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ---------------------------------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 125789999999999999999999862
Q ss_pred ----CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccccc
Q 002241 337 ----YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVA 412 (948)
Q Consensus 337 ----~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~ 412 (948)
+.++++|+++.++.+.+++.+....... ..++.+|+||||+|.+. ..+.++|++.++....
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P---~~~~~KVvIIDEad~Lt---~~A~NALLK~LEEpp~--------- 146 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKP---SMARFKIFIIDEVHMLT---KEAFNALLKTLEEPPS--------- 146 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCc---ccCCeEEEEEECcccCC---HHHHHHHHHHHhhcCC---------
Confidence 3588999988888888887775432221 13567999999999985 3688899999975321
Q ss_pred ccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 002241 413 KEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492 (948)
Q Consensus 413 ~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e 492 (948)
...+|++|++. ...+.+++++|..++|.+++.+++..+|..+|.++|+.++++++..|++
T Consensus 147 -------------------~t~FIL~ttd~-~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 147 -------------------YVKFILATTDP-LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred -------------------ceEEEEEECCh-hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 24488999986 4455778899999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHhcc
Q 002241 493 YTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545 (948)
Q Consensus 493 ~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~ 545 (948)
.++||+|.+++.|+.++. ..+.++...+.. .+|..+.. .+|+++..++...
T Consensus 207 ~s~GdlR~alnlLdqai~~~~~~It~~~V~~-~lg~~~~~-~I~~li~ai~~~d 258 (535)
T PRK08451 207 SGNGSLRDTLTLLDQAIIYCKNAITESKVAD-MLGLLDPS-KLEDFFQAILNQD 258 (535)
T ss_pred HcCCcHHHHHHHHHHHHHhcCCCCCHHHHHH-HhCCCCHH-HHHHHHHHHHhcC
Confidence 999999999999976543 233455454442 33443333 6888888777543
No 33
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.92 E-value=1.3e-23 Score=245.02 Aligned_cols=256 Identities=22% Similarity=0.342 Sum_probs=185.2
Q ss_pred cchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCC
Q 002241 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNG 277 (948)
Q Consensus 198 LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~ 277 (948)
-|.+||||++|+|++|++...+.|..+++...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~------------------------------------------------ 34 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNS------------------------------------------------ 34 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCC------------------------------------------------
Confidence 57799999999999999999888887766310
Q ss_pred CccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------------------
Q 002241 278 NFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY-------------------- 337 (948)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~-------------------- 337 (948)
.+..+||+|||||||||+|+++|+.++.
T Consensus 35 --------------------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 35 --------------------------------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred --------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 1246999999999999999999999865
Q ss_pred ----CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccc
Q 002241 338 ----HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAK 413 (948)
Q Consensus 338 ----~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~ 413 (948)
+++++|+++.++.+.++. |.+....... .++..||||||+|.+. ...++.|+..++....
T Consensus 83 g~~~dv~el~aa~~~gid~iR~-i~~~~~~~p~--~~~~kVvIIDE~h~Lt---~~a~~~LLk~LE~p~~---------- 146 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRK-IRDAVGYRPM--EGKYKVYIIDEVHMLT---KEAFNALLKTLEEPPS---------- 146 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHH-HHHHHhhChh--cCCeEEEEEEChHHhH---HHHHHHHHHHHHhCCC----------
Confidence 689999988888877764 4444443332 3567899999999984 3567788888764211
Q ss_pred cCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 002241 414 EDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493 (948)
Q Consensus 414 ~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~ 493 (948)
..-+|++||+.. .....++++|.++.|.+++..++..+|+.+|..+|+.++++++..|++.
T Consensus 147 ------------------~vv~Ilattn~~-kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 147 ------------------HVVFVLATTNLE-KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred ------------------cEEEEEEeCChH-hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 133566777544 2346688899999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHh
Q 002241 494 TECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLIS 572 (948)
Q Consensus 494 s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 572 (948)
++||+|.++|.|+.++.. ...++.+.+.. .+|.... ..+|+++..|.... ....+..+..++.
T Consensus 208 s~GdlR~aln~Le~l~~~~~~~It~e~V~~-~l~~~~~-~~i~~li~si~~~d--------------~~~Al~~l~~ll~ 271 (472)
T PRK14962 208 ASGGLRDALTMLEQVWKFSEGKITLETVHE-ALGLIPI-EVVRDYINAIFNGD--------------VKRVFTVLDDVYY 271 (472)
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCHHHHHH-HHcCCCH-HHHHHHHHHHHcCC--------------HHHHHHHHHHHHH
Confidence 999999999999987643 22344444432 2232211 24566665554322 1233444555555
Q ss_pred ccCChHHHHHHH
Q 002241 573 NRGDYDVIFDGI 584 (948)
Q Consensus 573 s~gd~d~i~~~l 584 (948)
+..++..++..+
T Consensus 272 ~Gedp~~i~r~l 283 (472)
T PRK14962 272 SGKDYEVLIQQA 283 (472)
T ss_pred cCCCHHHHHHHH
Confidence 555666555444
No 34
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=2.1e-23 Score=249.62 Aligned_cols=233 Identities=21% Similarity=0.294 Sum_probs=183.6
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+-|.+||||++|+||+|++...+.|.+|++...
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~---------------------------------------------- 36 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGR---------------------------------------------- 36 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCC----------------------------------------------
Confidence 4568999999999999999999999999988410
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
..+.+|||||+|+||||+|+++|+.+++
T Consensus 37 ----------------------------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 37 ----------------------------------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 1257899999999999999999999753
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++|+++.+..+.+.+++.+..+ ..... .++.+|+||||+|.+.. ++.++|++.++...
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~-~~~p~--~~~~KVvIIdev~~Lt~---~a~naLLk~LEepp--------- 147 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENV-KYLPS--RSRYKIFIIDEVHMLST---NAFNALLKTLEEPP--------- 147 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHH-Hhccc--cCCceEEEEEChhhCCH---HHHHHHHHHHHcCC---------
Confidence 37888887777777776655433 32222 35789999999999853 67899999997532
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
....+|++||+.. ..+..++++|..+.|.+++..++..+|..||.++|+.++++++..|+
T Consensus 148 -------------------~~~~fIl~t~~~~-kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la 207 (576)
T PRK14965 148 -------------------PHVKFIFATTEPH-KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVA 207 (576)
T ss_pred -------------------CCeEEEEEeCChh-hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 1345888888774 45667899999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHhcc
Q 002241 492 EYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~ 545 (948)
+.++||+|.+++.|+.+.. ....++.+++. ..+|..|.. .+|+++..++..+
T Consensus 208 ~~a~G~lr~al~~Ldqliay~g~~It~edV~-~llG~~~~~-~l~~ll~al~~~d 260 (576)
T PRK14965 208 RKGDGSMRDSLSTLDQVLAFCGDAVGDDDVA-ELLGVVDRR-LLLDISAAVFGRD 260 (576)
T ss_pred HHcCCCHHHHHHHHHHHHHhccCCCCHHHHH-HHhCCCCHH-HHHHHHHHHHcCC
Confidence 9999999999999976543 23345555544 234554443 5888888887654
No 35
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=6.3e-23 Score=244.69 Aligned_cols=263 Identities=19% Similarity=0.259 Sum_probs=197.7
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
.-+.|.+||||++|.||+|++..++.|.+|++...
T Consensus 10 ~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gr--------------------------------------------- 44 (598)
T PRK09111 10 PYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGR--------------------------------------------- 44 (598)
T ss_pred cchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCC---------------------------------------------
Confidence 46889999999999999999999999999888410
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY----------------- 337 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~----------------- 337 (948)
....+||+||+|+||||+|+++|+.+++
T Consensus 45 -----------------------------------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c 89 (598)
T PRK09111 45 -----------------------------------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG 89 (598)
T ss_pred -----------------------------------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc
Confidence 1257999999999999999999998754
Q ss_pred ------------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccc
Q 002241 338 ------------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSN 405 (948)
Q Consensus 338 ------------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~ 405 (948)
+|+|+++++..+.+.+++.+. .+....+ .+..+||||||+|.+.. ...+.|++.++....
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie-~~~~~P~--~a~~KVvIIDEad~Ls~---~a~naLLKtLEePp~-- 161 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIE-SVRYRPV--SARYKVYIIDEVHMLST---AAFNALLKTLEEPPP-- 161 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHH-HHHhchh--cCCcEEEEEEChHhCCH---HHHHHHHHHHHhCCC--
Confidence 356777777677777776554 4444443 35689999999999853 678899999875321
Q ss_pred cccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHH
Q 002241 406 TAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485 (948)
Q Consensus 406 ~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~ 485 (948)
...+|++|++... .+..++++|..+.|.+++.+++..+|..+|.++|+.++++
T Consensus 162 --------------------------~~~fIl~tte~~k-ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~e 214 (598)
T PRK09111 162 --------------------------HVKFIFATTEIRK-VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDE 214 (598)
T ss_pred --------------------------CeEEEEEeCChhh-hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 2458888887654 5667889999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhH
Q 002241 486 ALTTLAEYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEF 564 (948)
Q Consensus 486 ~L~~L~e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~ 564 (948)
++..|++.++||+|.+++.|+.+.. ..+.++.+++.. .+|..+. ..+|+++..++..+. ...+
T Consensus 215 Al~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~e~V~~-llg~~~~-~~if~L~~ai~~gd~--------------~~Al 278 (598)
T PRK09111 215 ALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRD-MLGLADR-ARVIDLFEALMRGDV--------------AAAL 278 (598)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCHHHHHH-HhCCCCH-HHHHHHHHHHHcCCH--------------HHHH
Confidence 9999999999999999999966533 333455555543 3343333 367888877765431 2234
Q ss_pred HHHHHHHhccCChHHHHHHHHHHh
Q 002241 565 DFLHSLISNRGDYDVIFDGIHENI 588 (948)
Q Consensus 565 ~~l~~~i~s~gd~d~i~~~l~eNy 588 (948)
..+..++....++..++.++.+.+
T Consensus 279 ~~l~~l~~~G~~p~~il~~L~~~~ 302 (598)
T PRK09111 279 AEFRAQYDAGADPVVVLTDLAEFT 302 (598)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444455555556666666666554
No 36
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=5e-23 Score=242.31 Aligned_cols=232 Identities=21% Similarity=0.295 Sum_probs=175.3
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
+.+.|++||||++|.|++|++...+.+.+|+....
T Consensus 2 ~~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~r--------------------------------------------- 36 (605)
T PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNK--------------------------------------------- 36 (605)
T ss_pred cchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCC---------------------------------------------
Confidence 35689999999999999999999999998887311
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY----------------- 337 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~----------------- 337 (948)
..+.+||+||+|+||||+|+++|+.+.+
T Consensus 37 -----------------------------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 37 -----------------------------------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred -----------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 1267999999999999999999998742
Q ss_pred -------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccc
Q 002241 338 -------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKEN 410 (948)
Q Consensus 338 -------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~ 410 (948)
+++++++++..+.+.++..+..+. .... .+..+|+||||+|.+.. ++.++|++.++....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~-~~P~--~~~~KVIIIDEad~Lt~---~A~NaLLKtLEEPp~------- 148 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNIN-YLPT--TFKYKVYIIDEAHMLST---SAWNALLKTLEEPPK------- 148 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHH-hchh--hCCcEEEEEechHhCCH---HHHHHHHHHHHhCCC-------
Confidence 678888877677777776554433 2222 24578999999999853 577899999875321
Q ss_pred ccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 002241 411 VAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTL 490 (948)
Q Consensus 411 ~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L 490 (948)
..-+|++|+.. ...+..++++|..+.|.+++..++..+|..+|.++|+.++++++..|
T Consensus 149 ---------------------~tvfIL~Tt~~-~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L 206 (605)
T PRK05896 149 ---------------------HVVFIFATTEF-QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI 206 (605)
T ss_pred ---------------------cEEEEEECCCh-HhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 12366677664 34556788999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCc-cccccccccceeccccccccHHHHHHHHHh
Q 002241 491 AEYTECDIRSCLNTLQFLDKKKE-ILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543 (948)
Q Consensus 491 ~e~s~GDIR~aIn~LQ~~~~~~~-~~~~~~i~~~~vg~kD~~~~lf~i~~~If~ 543 (948)
++.++||+|.+++.|+.++.-.+ .++...+.. .+|.-+. ..+|.++..+..
T Consensus 207 a~lS~GdlR~AlnlLekL~~y~~~~It~e~V~e-llg~~~~-~~Vf~Ll~AI~~ 258 (605)
T PRK05896 207 ADLADGSLRDGLSILDQLSTFKNSEIDIEDINK-TFGLVDN-NKKINLIELIQK 258 (605)
T ss_pred HHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH-HhccCCH-HHHHHHHHHHHC
Confidence 99999999999999998765322 233333332 1233222 135666665543
No 37
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=1.1e-22 Score=236.84 Aligned_cols=233 Identities=20% Similarity=0.243 Sum_probs=176.7
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
..+.|.+||||++|+|++|++.....|..|++...
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~--------------------------------------------- 37 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNR--------------------------------------------- 37 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCC---------------------------------------------
Confidence 36789999999999999999999998888887310
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY----------------- 337 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~----------------- 337 (948)
.++.+|||||+|+||||+|+++|+.+..
T Consensus 38 -----------------------------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 38 -----------------------------------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred -----------------------------------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 1257999999999999999999998632
Q ss_pred --------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccc
Q 002241 338 --------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKE 409 (948)
Q Consensus 338 --------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~ 409 (948)
+++++++.+.++.+.++..... +.... ..+..+||||||+|.+.. +..+.|++.++...
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~-l~~~~--~~~~~kvvIIdead~lt~---~~~n~LLk~lEep~------- 149 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINET-VLFTP--SKSRYKIYIIDEVHMLTK---EAFNSLLKTLEEPP------- 149 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHH-HHhhh--hcCCCEEEEEecHHhhCH---HHHHHHHHHhhcCC-------
Confidence 5777887766666666653332 22221 135789999999999853 56788888887421
Q ss_pred cccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 002241 410 NVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTT 489 (948)
Q Consensus 410 ~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~ 489 (948)
-...+|++||+. ...+..++++|..+.|.+++.+++..+|..++.++|+.++++++..
T Consensus 150 ---------------------~~~~~Il~t~~~-~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~ 207 (451)
T PRK06305 150 ---------------------QHVKFFLATTEI-HKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLP 207 (451)
T ss_pred ---------------------CCceEEEEeCCh-HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 124578888766 3455778999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhc
Q 002241 490 LAEYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQK 544 (948)
Q Consensus 490 L~e~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~ 544 (948)
|++.++||+|.++|.|+.++.- ...++.+.+. ..++.. ....+|+++..+...
T Consensus 208 L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~-~l~~~~-~~~~vf~L~~ai~~~ 261 (451)
T PRK06305 208 IARAAQGSLRDAESLYDYVVGLFPKSLDPDSVA-KALGLL-SQDSLYTLDEAITTQ 261 (451)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHH-HHHCCC-CHHHHHHHHHHHHcC
Confidence 9999999999999999987532 2234444443 222322 334788888766543
No 38
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.90 E-value=1.2e-22 Score=242.04 Aligned_cols=233 Identities=22% Similarity=0.270 Sum_probs=178.8
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
.+-|.+||||++|+||+|++...+.|.+|++...
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~---------------------------------------------- 36 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGK---------------------------------------------- 36 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCC----------------------------------------------
Confidence 4567899999999999999999999999988410
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG------------------- 336 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG------------------- 336 (948)
..+.+|||||+||||||+|+++|+.++
T Consensus 37 ----------------------------------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 37 ----------------------------------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 125799999999999999999999864
Q ss_pred -----CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 337 -----YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 337 -----~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
.+|+++++++.++.+.+++.+..+... . ..++.+|+||||+|.+.. ++.++|++.++....
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~-p--~~~~~kViIIDE~~~Lt~---~a~naLLKtLEepp~-------- 148 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYA-P--SEAKYKVYIIDEVHMLST---GAFNALLKTLEEPPA-------- 148 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhC-c--ccCCeEEEEEECcccCCH---HHHHHHHHHhcCCCC--------
Confidence 478999998878777777655544322 2 146789999999999853 678899988864211
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
..-+|++|+... ..+..++++|..+.|.+++..++..+|..++.++|+.++++++..|+
T Consensus 149 --------------------~~ifIlatt~~~-ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia 207 (559)
T PRK05563 149 --------------------HVIFILATTEPH-KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIA 207 (559)
T ss_pred --------------------CeEEEEEeCChh-hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 233667776653 34566888999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHhcc
Q 002241 492 EYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~ 545 (948)
..++||+|.+++.|+.+.. ....++.+++.. .+|.-+ ...+|+++..++..+
T Consensus 208 ~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~-vlg~~~-~~~i~~l~~al~~~d 260 (559)
T PRK05563 208 RAAEGGMRDALSILDQAISFGDGKVTYEDALE-VTGSVS-QEALDDLVDAIVEGD 260 (559)
T ss_pred HHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH-HhCCCC-HHHHHHHHHHHHccC
Confidence 9999999999999986643 233344444432 233322 225777777776543
No 39
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=3.6e-22 Score=233.92 Aligned_cols=232 Identities=21% Similarity=0.304 Sum_probs=174.3
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-..|++||||++|.|++|++...+.|.+|++...
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~---------------------------------------------- 36 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQR---------------------------------------------- 36 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCC----------------------------------------------
Confidence 4579999999999999999999999999998410
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
..+.+|||||+|+||||+|+++|+.+++
T Consensus 37 ----------------------------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 37 ----------------------------------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 1257899999999999999999998753
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++++++++.++.+.++. |.+.+..... .++++|+||||+|.+.. .+.+.|++.++....
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~-I~~~~~~~P~--~~~~KVvIIDEad~Lt~---~a~naLLk~LEepp~-------- 148 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRA-LRDAVSYTPI--KGKYKVYIIDEAHMLTK---EAFNALLKTLEEPPP-------- 148 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHH-HHHHHHhCcc--cCCeeEEEEEChhhcCH---HHHHHHHHHHhcCCC--------
Confidence 467788877777776654 4444444333 35789999999998853 567888888864211
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
..-+|++|++.. ..+..++++|..+.|.+++.+++..+|..+|..+|+.++++++..|+
T Consensus 149 --------------------~~v~Il~tt~~~-kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 149 --------------------RTIFILCTTEYD-KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred --------------------CeEEEEEECCHH-HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 123556666543 34556888999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhc
Q 002241 492 EYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQK 544 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~ 544 (948)
+.++||+|.+++.|+.++.- ...++...+.. .+|.-+ ...+|+++..|...
T Consensus 208 ~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~-~lg~~~-~~~vf~Li~ai~~~ 259 (486)
T PRK14953 208 QASEGGMRDAASLLDQASTYGEGKVTIKVVEE-FLGIVS-QESVRKFLNLLLES 259 (486)
T ss_pred HHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH-HhCCCC-HHHHHHHHHHHHCC
Confidence 99999999999999877432 22333333332 233222 22577777766653
No 40
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=5.3e-22 Score=238.22 Aligned_cols=231 Identities=22% Similarity=0.262 Sum_probs=177.1
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
...|.+||||++|.||+|++...+.|..|+....
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~r---------------------------------------------- 36 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNR---------------------------------------------- 36 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCC----------------------------------------------
Confidence 4679999999999999999999999999988410
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
....+||+||+|+||||+|+++|+.+++
T Consensus 37 ----------------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 37 ----------------------------------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred ----------------------------------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 1257999999999999999999999765
Q ss_pred --------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccc
Q 002241 338 --------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKE 409 (948)
Q Consensus 338 --------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~ 409 (948)
+++++++....+.+.+++.+..+ ....+ .++.+||||||+|.+. ..+.+.|++.++...
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a-~~~p~--~~~~KViIIDEad~Lt---~~a~naLLK~LEePp------- 149 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERA-QFAPV--QARWKVYVIDECHMLS---TAAFNALLKTLEEPP------- 149 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHH-hhChh--cCCceEEEEECccccC---HHHHHHHHHHHhcCC-------
Confidence 46677776656666777666443 32222 3567899999999984 367889999887422
Q ss_pred cccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 002241 410 NVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTT 489 (948)
Q Consensus 410 ~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~ 489 (948)
...-+|++|++... .+..++++|..+.|.+++..++..+|..++.++|+.++++++..
T Consensus 150 ---------------------~~tvfIL~t~~~~~-llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~ 207 (620)
T PRK14948 150 ---------------------PRVVFVLATTDPQR-VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTL 207 (620)
T ss_pred ---------------------cCeEEEEEeCChhh-hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 12347888887653 56778999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCccccccccccceeccccccccHHHHHHHHHh
Q 002241 490 LAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543 (948)
Q Consensus 490 L~e~s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~ 543 (948)
|++.++||+|.+++.|+.++.-...++.+.+.. .+|.. ....+|+++..++.
T Consensus 208 La~~s~G~lr~A~~lLeklsL~~~~It~e~V~~-lvg~~-~e~~i~~Ll~ai~~ 259 (620)
T PRK14948 208 VAQRSQGGLRDAESLLDQLSLLPGPITPEAVWD-LLGAV-PEQDLLNLLKALAS 259 (620)
T ss_pred HHHHcCCCHHHHHHHHHHHHhccCCCCHHHHHH-HhcCC-CHHHHHHHHHHHHC
Confidence 999999999999999998765433344333331 12211 12246666666664
No 41
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.89 E-value=5.4e-22 Score=237.69 Aligned_cols=234 Identities=19% Similarity=0.290 Sum_probs=175.3
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
+.-..|++||||++|.|++|++...+.|.+|++...
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~r-------------------------------------------- 38 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNK-------------------------------------------- 38 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCC--------------------------------------------
Confidence 345789999999999999999999999999998410
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------------
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY---------------- 337 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~---------------- 337 (948)
..+.+|||||+|+||||+|+++|+.+.+
T Consensus 39 ------------------------------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 39 ------------------------------------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred ------------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 1257899999999999999999998643
Q ss_pred -----CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccccc
Q 002241 338 -----HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVA 412 (948)
Q Consensus 338 -----~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~ 412 (948)
.+++++++...+.+.++..+..+ ..... .++.+|+||||+|.+.. ++.++|++.++....
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~-~~~P~--~g~~KV~IIDEa~~LT~---~A~NALLKtLEEPP~--------- 147 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENV-KNLPT--QSKYKIYIIDEVHMLSK---SAFNALLKTLEEPPK--------- 147 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHH-Hhchh--cCCCEEEEEEChhhCCH---HHHHHHHHHhhcCCC---------
Confidence 35677776556666676655433 33222 46789999999999854 678899999875321
Q ss_pred ccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 002241 413 KEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492 (948)
Q Consensus 413 ~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e 492 (948)
..-+|++|++.. ..+..++++|..+.|.+++.+++..+|..++.++|+.++++++..|+.
T Consensus 148 -------------------~tifILaTte~~-KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~ 207 (725)
T PRK07133 148 -------------------HVIFILATTEVH-KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAK 207 (725)
T ss_pred -------------------ceEEEEEcCChh-hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 133677777654 345678999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhc
Q 002241 493 YTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQK 544 (948)
Q Consensus 493 ~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~ 544 (948)
.++||+|.+++.|+.++.- ...++...+. ..+|.... ..+|+++..++..
T Consensus 208 lS~GslR~AlslLekl~~y~~~~It~e~V~-ellg~~~~-e~If~Ll~aI~~k 258 (725)
T PRK07133 208 LSSGSLRDALSIAEQVSIFGNNKITLKNVE-ELFGLVSN-ENLINLLNLLYSK 258 (725)
T ss_pred HcCCCHHHHHHHHHHHHHhccCCCCHHHHH-HHHcCCCH-HHHHHHHHHHHcC
Confidence 9999999999999876532 2223333332 12232221 2467777766553
No 42
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=7.3e-22 Score=237.35 Aligned_cols=233 Identities=21% Similarity=0.273 Sum_probs=178.1
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
.+-|.+||||++|+||+|++...+.|..|+..+.
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~---------------------------------------------- 36 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGR---------------------------------------------- 36 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCC----------------------------------------------
Confidence 3558899999999999999999999999888421
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG------------------- 336 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG------------------- 336 (948)
....+||+||+|+||||+|+++|+.++
T Consensus 37 ----------------------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 37 ----------------------------------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred ----------------------------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 125689999999999999999999864
Q ss_pred ------CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccc
Q 002241 337 ------YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKEN 410 (948)
Q Consensus 337 ------~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~ 410 (948)
.+++++++++..+.+.+++.+ +.++.... .+..+||||||+|.+.. ..++.|++.++...
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii-~~~~~~p~--~~~~kVvIIDEa~~L~~---~a~naLLk~LEepp-------- 148 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREII-ERVQFRPA--LARYKVYIIDEVHMLST---AAFNALLKTLEEPP-------- 148 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHH-HHHhhCcc--cCCeEEEEEeChHhCCH---HHHHHHHHHHhcCC--------
Confidence 246778887777777776654 33443332 35678999999998853 56788888886421
Q ss_pred ccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 002241 411 VAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTL 490 (948)
Q Consensus 411 ~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L 490 (948)
....+|++|++... .+..++++|..+.|.+++..++..+|..++.++|+.++++++..|
T Consensus 149 --------------------~~tv~Il~t~~~~k-ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~L 207 (585)
T PRK14950 149 --------------------PHAIFILATTEVHK-VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAI 207 (585)
T ss_pred --------------------CCeEEEEEeCChhh-hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 12447788877543 556788999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhcc
Q 002241 491 AEYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545 (948)
Q Consensus 491 ~e~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~ 545 (948)
++.++||+|.+++.|+.++.- .+.++.+.+.. .++. .....+|+++..++..+
T Consensus 208 a~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~-ll~~-s~~~~vf~Lidal~~~d 261 (585)
T PRK14950 208 ARAATGSMRDAENLLQQLATTYGGEISLSQVQS-LLGI-SGDEEVKALAEALLAKD 261 (585)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH-HhcC-CCHHHHHHHHHHHHcCC
Confidence 999999999999999987642 23344444432 2222 22346888888777643
No 43
>PRK04132 replication factor C small subunit; Provisional
Probab=99.89 E-value=5.8e-22 Score=241.54 Aligned_cols=250 Identities=18% Similarity=0.243 Sum_probs=192.9
Q ss_pred EEEEc--CCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 314 LLLCG--PPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 314 LLL~G--PPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
-+..| |.|+||||+|++||+++ +++++|+||||.++.+.+++.+..+.+..++. ..+.+||||||+|.+..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~-~~~~KVvIIDEaD~Lt~- 644 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG-GASFKIIFLDEADALTQ- 644 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC-CCCCEEEEEECcccCCH-
Confidence 34568 99999999999999997 56899999999999999999998887665542 23568999999999954
Q ss_pred ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHH
Q 002241 387 GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSR 466 (948)
Q Consensus 387 ~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~ 466 (948)
+++++|+++++.. ..++++|++||+.. ..+.+++++|..+.|.+++.++
T Consensus 645 --~AQnALLk~lEep----------------------------~~~~~FILi~N~~~-kIi~tIrSRC~~i~F~~ls~~~ 693 (846)
T PRK04132 645 --DAQQALRRTMEMF----------------------------SSNVRFILSCNYSS-KIIEPIQSRCAIFRFRPLRDED 693 (846)
T ss_pred --HHHHHHHHHhhCC----------------------------CCCeEEEEEeCChh-hCchHHhhhceEEeCCCCCHHH
Confidence 6888999998742 12478999999975 4678899999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCccccccccccceeccccccccHHHHHHHHHhcch
Q 002241 467 VVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRK 546 (948)
Q Consensus 467 l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~ 546 (948)
+..+|..||.+||+.++++++..|+..|+||+|.|||.||.++.....++.+.+.. +...+....+++++..++..+
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~--~~~~~~~~~I~~il~~~l~~~- 770 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFL--VASRARPEDIREMMLLALKGN- 770 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHH--HhCCCCHHHHHHHHHHHhcCc-
Confidence 99999999999999999999999999999999999999999886554454444332 122333346777777666533
Q ss_pred hhhhccccCCCCCchhhHHHHHHHH-hccCChHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhHHh
Q 002241 547 TKRLRNSVSSSSNVSNEFDFLHSLI-SNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLMH 615 (948)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~l~~~i-~s~gd~d~i~~~l~eNyl~~~~~D~~l~~~~~a~d~Ls~~D~l~ 615 (948)
.......+.+++ ..+.+++.++..+++........+. .....+++++..|...
T Consensus 771 -------------~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i~~~---~k~~ll~~lae~e~rl 824 (846)
T PRK04132 771 -------------FLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEP---KKVELADKIGEYNFRL 824 (846)
T ss_pred -------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHHhHHH
Confidence 122344455655 6788999999999988754333221 2345667777766543
No 44
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.89 E-value=1.3e-21 Score=221.73 Aligned_cols=230 Identities=21% Similarity=0.304 Sum_probs=172.5
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
+.|+|||||++|.|++|++...+.+..|++...
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~----------------------------------------------- 34 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGR----------------------------------------------- 34 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCC-----------------------------------------------
Confidence 579999999999999999999999999998410
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--------------------
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG-------------------- 336 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG-------------------- 336 (948)
..+.+||+||||+||||+|+++|+.+.
T Consensus 35 ---------------------------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 35 ---------------------------------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ---------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 125799999999999999999999863
Q ss_pred ----CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccccc
Q 002241 337 ----YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVA 412 (948)
Q Consensus 337 ----~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~ 412 (948)
++++++++++..+.+.++..+.. +..... .+..+||||||+|.+.. ...+.|++.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~p~--~~~~~vviidea~~l~~---~~~~~Ll~~le~~~---------- 145 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDN-VKYAPS--SGKYKVYIIDEVHMLSK---SAFNALLKTLEEPP---------- 145 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHH-HhcCcc--cCCceEEEEeChhhcCH---HHHHHHHHHHhCCc----------
Confidence 35778888766666566554443 333322 35678999999998843 56777888775311
Q ss_pred ccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 002241 413 KEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE 492 (948)
Q Consensus 413 ~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e 492 (948)
....+|++||+.. ..+..++++|..+.|.+|+.+++..+|..++.++|+.++++++..|++
T Consensus 146 ------------------~~~~lIl~~~~~~-~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~ 206 (355)
T TIGR02397 146 ------------------EHVVFILATTEPH-KIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIAR 206 (355)
T ss_pred ------------------cceeEEEEeCCHH-HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1234678888754 234668889999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHh
Q 002241 493 YTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQ 543 (948)
Q Consensus 493 ~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~ 543 (948)
.++||+|.+++.|+.++.- .+.++.+++.. .++ ......+|+++..++.
T Consensus 207 ~~~g~~~~a~~~lekl~~~~~~~it~~~v~~-~~~-~~~~~~i~~l~~ai~~ 256 (355)
T TIGR02397 207 AADGSLRDALSLLDQLISFGNGNITYEDVNE-LLG-LVDDEKLIELLEAILN 256 (355)
T ss_pred HcCCChHHHHHHHHHHHhhcCCCCCHHHHHH-HhC-CCCHHHHHHHHHHHHc
Confidence 9999999999999877542 22244444432 111 1223357777777764
No 45
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=1.5e-21 Score=234.25 Aligned_cols=261 Identities=19% Similarity=0.274 Sum_probs=195.3
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
..|.+||||.+|+|++|++...+.|..|++.-
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~------------------------------------------------ 36 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATN------------------------------------------------ 36 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC------------------------------------------------
Confidence 57999999999999999999999999998830
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--------------------
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG-------------------- 336 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG-------------------- 336 (948)
.....+|||||+|+||||+|+++|+.+.
T Consensus 37 --------------------------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 37 --------------------------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred --------------------------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 0125799999999999999999999864
Q ss_pred -----CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 337 -----YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 337 -----~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
++++++++++..+.+.++..+..+.. ... .+..+|+||||+|.+.. .+.+.|+++++....
T Consensus 85 ~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~-~P~--~~~~KVvIIdea~~Ls~---~a~naLLK~LEepp~-------- 150 (614)
T PRK14971 85 NEQRSYNIHELDAASNNSVDDIRNLIEQVRI-PPQ--IGKYKIYIIDEVHMLSQ---AAFNAFLKTLEEPPS-------- 150 (614)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhh-Ccc--cCCcEEEEEECcccCCH---HHHHHHHHHHhCCCC--------
Confidence 57888888877777777766654432 222 35678999999999843 678899999875321
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
..-+|++|+.. ...+..++++|.++.|.+++.+++..+|..+|.++|+.++++++..|+
T Consensus 151 --------------------~tifIL~tt~~-~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 151 --------------------YAIFILATTEK-HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred --------------------CeEEEEEeCCc-hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12377777754 346677899999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHH
Q 002241 492 EYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSL 570 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 570 (948)
+.++||+|.+++.|+.++. ....++...+.. .++..+. ..+|+++..+...+. ...+..+..+
T Consensus 210 ~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~-~l~~~~~-~~iF~L~dai~~~~~--------------~~al~ll~~L 273 (614)
T PRK14971 210 QKADGGMRDALSIFDQVVSFTGGNITYKSVIE-NLNILDY-DYYFRLTDALLAGKV--------------SDSLLLFDEI 273 (614)
T ss_pred HHcCCCHHHHHHHHHHHHHhccCCccHHHHHH-HhCCCCH-HHHHHHHHHHHcCCH--------------HHHHHHHHHH
Confidence 9999999999999987643 222244433322 2233332 378998888876542 1233444455
Q ss_pred HhccCChHHHHHHHHHHh
Q 002241 571 ISNRGDYDVIFDGIHENI 588 (948)
Q Consensus 571 i~s~gd~d~i~~~l~eNy 588 (948)
+....++..++.+|...|
T Consensus 274 l~~g~~~~~iL~~L~~~f 291 (614)
T PRK14971 274 LNKGFDGSHFITGLASHF 291 (614)
T ss_pred HHcCCCHHHHHHHHHHHH
Confidence 555556666666665544
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.88 E-value=3.1e-21 Score=212.50 Aligned_cols=161 Identities=24% Similarity=0.261 Sum_probs=127.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
..++|+|||||||||+|++||+..+++|.++||.... ...++..+.++-+... .++..|||||||+.+ ++..+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g-vkdlr~i~e~a~~~~~---~gr~tiLflDEIHRf---nK~QQ 121 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG-VKDLREIIEEARKNRL---LGRRTILFLDEIHRF---NKAQQ 121 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc-HHHHHHHHHHHHHHHh---cCCceEEEEehhhhc---Chhhh
Confidence 5799999999999999999999999999999997654 4456666666544332 467899999999998 45778
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEe---cCCCchhhhhhccceEEEEecCcCHHHHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICIC---NDLYAPALRSLRQIAKVHVFIQPSVSRVV 468 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ic---NDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~ 468 (948)
+.|+-+++.+. ||+|. -+.+...-..|+++|.++.|.+.+.+++.
T Consensus 122 D~lLp~vE~G~--------------------------------iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~ 169 (436)
T COG2256 122 DALLPHVENGT--------------------------------IILIGATTENPSFELNPALLSRARVFELKPLSSEDIK 169 (436)
T ss_pred hhhhhhhcCCe--------------------------------EEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHH
Confidence 88998887432 44432 23333233457889999999999999999
Q ss_pred HHHHHHh--hhcCCC-----CCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002241 469 SRLKHIC--NNESMK-----TSSIALTTLAEYTECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 469 ~~L~~I~--~~Egi~-----id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~ 511 (948)
+.|++.+ ...|+. ++++++..|+..++||.|.+||.|+++...
T Consensus 170 ~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~ 219 (436)
T COG2256 170 KLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALS 219 (436)
T ss_pred HHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 9999843 344555 789999999999999999999999998754
No 47
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=1.7e-21 Score=222.32 Aligned_cols=234 Identities=18% Similarity=0.274 Sum_probs=173.5
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
....|.+||||++|+|++|++...+.+..|++...
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~--------------------------------------------- 37 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNH--------------------------------------------- 37 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCC---------------------------------------------
Confidence 34689999999999999999999999999988410
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------------CCccee
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG------------YHVVEV 342 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG------------~~viEi 342 (948)
..+++|||||||+||||+|+++|++++ +.++++
T Consensus 38 -----------------------------------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 38 -----------------------------------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred -----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 126899999999999999999999863 456777
Q ss_pred cCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhh
Q 002241 343 NASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISK 422 (948)
Q Consensus 343 NaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~ 422 (948)
++.+..+.+.+...+..+.. ... .+++.||||||+|.+.. ..++.|++.++...
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~-~p~--~~~~kiviIDE~~~l~~---~~~~~ll~~le~~~-------------------- 136 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRI-PPQ--TGKYKIYIIDEVHMLSS---AAFNAFLKTLEEPP-------------------- 136 (367)
T ss_pred ccccCCCHHHHHHHHHHHhh-ccc--cCCcEEEEEeChhhcCH---HHHHHHHHHHhCCC--------------------
Confidence 77666666666655554322 222 34678999999998853 45677777665311
Q ss_pred ccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHH
Q 002241 423 KKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCL 502 (948)
Q Consensus 423 kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aI 502 (948)
....+|++||.. ...+..++++|..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.++
T Consensus 137 --------~~~~~Il~~~~~-~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 137 --------AHAIFILATTEK-HKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred --------CceEEEEEeCCc-ccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHH
Confidence 113366677654 33456678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhcc
Q 002241 503 NTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKR 545 (948)
Q Consensus 503 n~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~ 545 (948)
+.|+.++.- ...++.+.+.. .++.- ...++|++++.++..+
T Consensus 208 ~~lekl~~y~~~~it~~~v~~-~~~~~-~~~~if~l~~ai~~~~ 249 (367)
T PRK14970 208 SIFDRVVTFCGKNITRQAVTE-NLNIL-DYDTYINVTDLILENK 249 (367)
T ss_pred HHHHHHHHhcCCCCCHHHHHH-HhCCC-CHHHHHHHHHHHHcCC
Confidence 999988642 11243333331 22322 2236888888776543
No 48
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=2.2e-21 Score=223.29 Aligned_cols=231 Identities=18% Similarity=0.236 Sum_probs=169.6
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
+.-++||||++|+|++|++...+.|.+|+..-
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------------------------------------------ 35 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMG------------------------------------------------ 35 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhC------------------------------------------------
Confidence 34589999999999999999999999888730
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------- 337 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------- 337 (948)
.....+||+||||+||||+|+++|+.+.+
T Consensus 36 --------------------------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 36 --------------------------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred --------------------------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 01256999999999999999999998865
Q ss_pred -------------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcc
Q 002241 338 -------------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKS 404 (948)
Q Consensus 338 -------------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~ 404 (948)
+++++++++..+.+.+++.+.. +..... .+..+||||||+|.+.. ..++.|++.++....
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~-~~~~p~--~~~~kvvIIdea~~l~~---~~~~~LLk~LEep~~- 156 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRLLREN-VRYGPQ--KGRYRVYIIDEVHMLSI---AAFNAFLKTLEEPPP- 156 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHH-Hhhchh--cCCeEEEEEeChhhCCH---HHHHHHHHHHhcCCC-
Confidence 3556666665556666654333 322222 34678999999999853 567788888864211
Q ss_pred ccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCH
Q 002241 405 NTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSS 484 (948)
Q Consensus 405 ~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~ 484 (948)
..-+|++|++. ...+..++++|.++.|.+++.+++.+++..++..+|+.+++
T Consensus 157 ---------------------------~t~~Il~t~~~-~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~ 208 (397)
T PRK14955 157 ---------------------------HAIFIFATTEL-HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDA 208 (397)
T ss_pred ---------------------------CeEEEEEeCCh-HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 23477777765 34556788899999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhc------CccccccccccceeccccccccHHHHHHHHHhc
Q 002241 485 IALTTLAEYTECDIRSCLNTLQFLDKK------KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQK 544 (948)
Q Consensus 485 ~~L~~L~e~s~GDIR~aIn~LQ~~~~~------~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~ 544 (948)
+++..|++.++||+|.+++.|+.+..- ...++.+.+.. .++ +....++|+++..+...
T Consensus 209 ~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~-~v~-~~~~~~vf~l~~ai~~~ 272 (397)
T PRK14955 209 DALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAE-LLN-YIDDEHFFAVTDAVADG 272 (397)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHH-HHC-CCCHHHHHHHHHHHHcC
Confidence 999999999999999999999976431 22333333321 122 12233567777766654
No 49
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.87 E-value=5.1e-21 Score=227.46 Aligned_cols=232 Identities=16% Similarity=0.231 Sum_probs=173.1
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
-+-|..||||++|.|++|++...+.|..|++...
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~---------------------------------------------- 36 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNK---------------------------------------------- 36 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCC----------------------------------------------
Confidence 3568899999999999999999999999998410
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
..+.+|||||+|+||||+|+++|+.+++
T Consensus 37 ----------------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 37 ----------------------------------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 1257999999999999999999998753
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++++++....+.+.++..+..+. .... .++.+|+||||+|.+. ..+++.|++.++....
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~-~~p~--~~~~KVvIIDEa~~Ls---~~a~naLLK~LEepp~-------- 148 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIM-FPPA--SSRYRVYIIDEVHMLS---NSAFNALLKTIEEPPP-------- 148 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHH-hchh--cCCCEEEEEEChhhcC---HHHHHHHHHhhccCCC--------
Confidence 567777765555666655443322 2222 4678999999999984 3678889888864211
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
..-+|++|++.. ..+..++++|..+.|.+++.+++..+|..+|..+|+.++++++..|+
T Consensus 149 --------------------~~vfI~~tte~~-kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa 207 (563)
T PRK06647 149 --------------------YIVFIFATTEVH-KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIA 207 (563)
T ss_pred --------------------CEEEEEecCChH-HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 233677777653 34567899999999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHHHHHHhc
Q 002241 492 EYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQK 544 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~ 544 (948)
+.++||+|.+++.|+-++. ..+.++...+.. .+|..+ ...+|+++..++..
T Consensus 208 ~~s~GdlR~alslLdklis~~~~~It~e~V~~-llg~~~-~~~if~LidaI~~~ 259 (563)
T PRK06647 208 YKSTGSVRDAYTLFDQVVSFSDSDITLEQIRS-KMGLTG-DEFLEKLASSILNE 259 (563)
T ss_pred HHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHH-HhCCCC-HHHHHHHHHHHHcC
Confidence 9999999999999976543 223344333332 223222 22566777666553
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.87 E-value=5.8e-21 Score=221.10 Aligned_cols=163 Identities=24% Similarity=0.263 Sum_probs=122.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
.++||+|||||||||+|+++|++++..+++++++.. +...++..+..+.... ..++..||||||||.+.. ...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-~~~~ir~ii~~~~~~~---~~g~~~vL~IDEi~~l~~---~~q 109 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-GVKDLREVIEEARQRR---SAGRRTILFIDEIHRFNK---AQQ 109 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-cHHHHHHHHHHHHHhh---hcCCceEEEEechhhhCH---HHH
Confidence 478999999999999999999999999999999865 3344444444433221 134678999999998843 456
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec-CCCchhhhhhccceEEEEecCcCHHHHHHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN-DLYAPALRSLRQIAKVHVFIQPSVSRVVSR 470 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN-Dl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~ 470 (948)
+.|+..++... ..+|++++ +........++++|.++.|.+++.+++..+
T Consensus 110 ~~LL~~le~~~------------------------------iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~l 159 (413)
T PRK13342 110 DALLPHVEDGT------------------------------ITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQL 159 (413)
T ss_pred HHHHHHhhcCc------------------------------EEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHH
Confidence 67777664210 11333322 222233456788999999999999999999
Q ss_pred HHHHhhhc--CC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002241 471 LKHICNNE--SM-KTSSIALTTLAEYTECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 471 L~~I~~~E--gi-~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~ 511 (948)
|..++... ++ .++++++..|++.++||+|.++|.|+.++..
T Consensus 160 L~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~ 203 (413)
T PRK13342 160 LKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG 203 (413)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99988653 55 8999999999999999999999999988654
No 51
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=6.5e-21 Score=227.78 Aligned_cols=197 Identities=21% Similarity=0.279 Sum_probs=155.6
Q ss_pred cchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCC
Q 002241 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNG 277 (948)
Q Consensus 198 LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~ 277 (948)
.-.+||||++|.|++|++...+.|.+|++.-
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~------------------------------------------------- 35 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMD------------------------------------------------- 35 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-------------------------------------------------
Confidence 3478999999999999999999988887730
Q ss_pred CccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------------------
Q 002241 278 NFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY-------------------- 337 (948)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~-------------------- 337 (948)
.....+||+||+||||||+|+++|+.+++
T Consensus 36 -------------------------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 36 -------------------------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred -------------------------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 01256999999999999999999999865
Q ss_pred ------------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccc
Q 002241 338 ------------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSN 405 (948)
Q Consensus 338 ------------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~ 405 (948)
+++++++.+..+.+.+++.+..+. .... .+..+|+||||+|.+.. +..+.|++.++....
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~-~~P~--~~~~KVvIIdEad~Lt~---~a~naLLK~LEePp~-- 156 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVR-YGPQ--KGRYRVYIIDEVHMLST---AAFNAFLKTLEEPPP-- 156 (620)
T ss_pred HHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHH-hhhh--cCCCEEEEEeChhhcCH---HHHHHHHHHHhCCCC--
Confidence 344555545555666665443332 2222 35678999999999853 578899999875221
Q ss_pred cccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHH
Q 002241 406 TAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI 485 (948)
Q Consensus 406 ~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~ 485 (948)
..-+|++|++. ...+..++++|.++.|.+++..++...|..++.++|+.++++
T Consensus 157 --------------------------~tv~IL~t~~~-~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~e 209 (620)
T PRK14954 157 --------------------------HAIFIFATTEL-HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDAD 209 (620)
T ss_pred --------------------------CeEEEEEeCCh-hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 12367777665 445567899999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 002241 486 ALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 486 ~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
++..|++.++||+|.+++.|+-++
T Consensus 210 al~~La~~s~Gdlr~al~eLeKL~ 233 (620)
T PRK14954 210 ALQLIARKAQGSMRDAQSILDQVI 233 (620)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999998654
No 52
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.8e-21 Score=225.44 Aligned_cols=260 Identities=19% Similarity=0.298 Sum_probs=202.6
Q ss_pred chhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCCC
Q 002241 199 WVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGN 278 (948)
Q Consensus 199 WvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~~ 278 (948)
..-||||++|.|++|++...+.|..-|..-.
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~r------------------------------------------------- 36 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENGR------------------------------------------------- 36 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhCc-------------------------------------------------
Confidence 4579999999999999999999988777400
Q ss_pred ccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------------------
Q 002241 279 FRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY--------------------- 337 (948)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~--------------------- 337 (948)
.....||+||-||||||+|+++|+.+++
T Consensus 37 -------------------------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 37 -------------------------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEG 85 (515)
T ss_pred -------------------------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcC
Confidence 1257899999999999999999998753
Q ss_pred ---CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccccccc
Q 002241 338 ---HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKE 414 (948)
Q Consensus 338 ---~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~ 414 (948)
+|+||+|.+.++.+.+++.+.+....- ..++++|+||||++.++. ++.++|++.++....
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P---~~~ryKVyiIDEvHMLS~---~afNALLKTLEEPP~----------- 148 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAP---SEGRYKVYIIDEVHMLSK---QAFNALLKTLEEPPS----------- 148 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCC---ccccceEEEEecHHhhhH---HHHHHHhcccccCcc-----------
Confidence 688899888888888877665544322 267899999999998854 789999999976432
Q ss_pred CchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc
Q 002241 415 DQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT 494 (948)
Q Consensus 415 ~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s 494 (948)
..-+|+.|.+... ....+.++|..+.|.+.+.+.+..+|..|+.+|+|.+++++|..|+..+
T Consensus 149 -----------------hV~FIlATTe~~K-ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a 210 (515)
T COG2812 149 -----------------HVKFILATTEPQK-IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAA 210 (515)
T ss_pred -----------------CeEEEEecCCcCc-CchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHc
Confidence 2346777777653 3345788999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHH-HhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhc
Q 002241 495 ECDIRSCLNTLQFL-DKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISN 573 (948)
Q Consensus 495 ~GDIR~aIn~LQ~~-~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s 573 (948)
+|.+|.+++.|..+ +.+.+.++...+.. .+|.-|.. .+.+.+..|+... ....+..+.++++.
T Consensus 211 ~Gs~RDalslLDq~i~~~~~~It~~~v~~-~lG~~~~~-~~~~~~~~i~~~d--------------~~~~~~~~~~l~~~ 274 (515)
T COG2812 211 EGSLRDALSLLDQAIAFGEGEITLESVRD-MLGLTDIE-KLLSLLEAILKGD--------------AKEALRLINELIEE 274 (515)
T ss_pred CCChhhHHHHHHHHHHccCCcccHHHHHH-HhCCCCHH-HHHHHHHHHHccC--------------HHHHHHHHHHHHHh
Confidence 99999999999554 44445566555542 34554443 5667777776553 23456667777777
Q ss_pred cCChHHHHHHHHHHhh
Q 002241 574 RGDYDVIFDGIHENIL 589 (948)
Q Consensus 574 ~gd~d~i~~~l~eNyl 589 (948)
..++..++..+.+.+.
T Consensus 275 G~~~~~~l~dl~~~~~ 290 (515)
T COG2812 275 GKDPEAFLEDLLNFLR 290 (515)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 7799999888887763
No 53
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.84 E-value=2.3e-19 Score=218.13 Aligned_cols=161 Identities=23% Similarity=0.289 Sum_probs=121.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
.++||+|||||||||+|+++|+..+..++++|++.. +...++..+..+..... ..++..+|||||||.+.. ..+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~dir~~i~~a~~~l~--~~~~~~IL~IDEIh~Ln~---~qQ 126 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVKDLRAEVDRAKERLE--RHGKRTILFIDEVHRFNK---AQQ 126 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhHHHHHHHHHHHHHhh--hcCCceEEEEeChhhCCH---HHH
Confidence 468999999999999999999999999999999753 33334444443322111 124578999999998843 456
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEe--c-CCCchhhhhhccceEEEEecCcCHHHHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICIC--N-DLYAPALRSLRQIAKVHVFIQPSVSRVV 468 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ic--N-Dl~~p~Lr~Lr~~~~iI~F~~p~~~~l~ 468 (948)
+.|+..++. ..+|+|+ + +.+......++++|.++.|.+++.+++.
T Consensus 127 daLL~~lE~--------------------------------g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~ 174 (725)
T PRK13341 127 DALLPWVEN--------------------------------GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLH 174 (725)
T ss_pred HHHHHHhcC--------------------------------ceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHH
Confidence 677766542 1134443 2 2222234567778999999999999999
Q ss_pred HHHHHHhh-------hcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002241 469 SRLKHICN-------NESMKTSSIALTTLAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 469 ~~L~~I~~-------~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
.+|+.++. .+++.++++++..|++.+.||+|.++|.|+.++.
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVE 223 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999987 5788999999999999999999999999998764
No 54
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.82 E-value=4.5e-20 Score=197.85 Aligned_cols=170 Identities=24% Similarity=0.286 Sum_probs=139.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-C---CC--cceecCCCCCChHHHHHHHHHHHhhhcc--cc-cCCCcEEEecCccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-G---YH--VVEVNASDDRSSSTIENKILDVVQMNSV--MA-DSRPKCLVIDEIDG 382 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-G---~~--viEiNaSd~rs~~~~~~~I~~~~~~~sv--~~-~~kp~iLIIDEID~ 382 (948)
+++|+|||||+|||+...++|+.+ + +. +.|+|+||+|+.+.++..|..+..+... +. ...+++||+||.|.
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADa 142 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADA 142 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhH
Confidence 489999999999999999999985 3 44 9999999999999999988887765532 22 23689999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCc
Q 002241 383 ALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 383 l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p 462 (948)
++. .++++|-..+.... -+..+++|||.+.. ...+++.+|..+.|.+.
T Consensus 143 MT~---~AQnALRRviek~t----------------------------~n~rF~ii~n~~~k-i~pa~qsRctrfrf~pl 190 (360)
T KOG0990|consen 143 MTR---DAQNALRRVIEKYT----------------------------ANTRFATISNPPQK-IHPAQQSRCTRFRFAPL 190 (360)
T ss_pred hhH---HHHHHHHHHHHHhc----------------------------cceEEEEeccChhh-cCchhhcccccCCCCCC
Confidence 965 56666666554321 13447788887653 34567789999999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCc
Q 002241 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKE 513 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~ 513 (948)
+......++.+||+.|.+.+.++...+++..+.||+|.++|.||-.+....
T Consensus 191 ~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~ 241 (360)
T KOG0990|consen 191 TMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVM 241 (360)
T ss_pred ChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998876543
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=9e-19 Score=182.52 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=137.6
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
.+....+++||++|+|.+|+++....+.-+++.... ++
T Consensus 10 ~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~---------------------------------------r~--- 47 (233)
T PF05496_consen 10 EEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKK---------------------------------------RG--- 47 (233)
T ss_dssp --S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHC---------------------------------------TT---
T ss_pred cchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHh---------------------------------------cC---
Confidence 456788999999999999999999998887774210 00
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHH
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIE 354 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~ 354 (948)
..-.++|||||||+||||||+++|+++|.++...+++.......+.
T Consensus 48 ----------------------------------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~ 93 (233)
T PF05496_consen 48 ----------------------------------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLA 93 (233)
T ss_dssp ----------------------------------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHH
T ss_pred ----------------------------------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHH
Confidence 0115899999999999999999999999999999987655544444
Q ss_pred HHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCc
Q 002241 355 NKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRP 434 (948)
Q Consensus 355 ~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rP 434 (948)
..+.+ -....|||||||+.+. +...+.|+..+++.......+.. ...+......-..-
T Consensus 94 ~il~~---------l~~~~ILFIDEIHRln---k~~qe~LlpamEd~~idiiiG~g----------~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 AILTN---------LKEGDILFIDEIHRLN---KAQQEILLPAMEDGKIDIIIGKG----------PNARSIRINLPPFT 151 (233)
T ss_dssp HHHHT-----------TT-EEEECTCCC-----HHHHHHHHHHHHCSEEEEEBSSS----------SS-BEEEEE----E
T ss_pred HHHHh---------cCCCcEEEEechhhcc---HHHHHHHHHHhccCeEEEEeccc----------cccceeeccCCCce
Confidence 33221 1356799999999983 46778899988864321110000 00000001111223
Q ss_pred EEEEecCCCchhhhhhccceEE-EEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 435 VICICNDLYAPALRSLRQIAKV-HVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 435 II~icNDl~~p~Lr~Lr~~~~i-I~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
+|..++.... ...|||.+.-+ .++..++.+++.+++..-+...++.+++++...|+..|.|+-|-|.+.|..+
T Consensus 152 ligATTr~g~-ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGL-LSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCC-TSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred Eeeeeccccc-cchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4555554422 33567775544 5799999999999999999999999999999999999999999999999875
No 56
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.79 E-value=4.7e-19 Score=197.81 Aligned_cols=174 Identities=29% Similarity=0.318 Sum_probs=141.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC------------------------CCcceecCCCCCChHHHHHHHHHHHhhhcccc
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCG------------------------YHVVEVNASDDRSSSTIENKILDVVQMNSVMA 368 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG------------------------~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~ 368 (948)
.+||+||||+||||+|+++|++++ .+|+|+|+|+.+..+...+.|+++....+...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 699999999999999999999987 69999999999998777788888877665442
Q ss_pred -cCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh
Q 002241 369 -DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL 447 (948)
Q Consensus 369 -~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L 447 (948)
.+..+||||||+|++.. .+.++|++.++.. ..+.++||+||+... .+
T Consensus 106 ~~~~~kviiidead~mt~---~A~nallk~lEep----------------------------~~~~~~il~~n~~~~-il 153 (325)
T COG0470 106 LEGGYKVVIIDEADKLTE---DAANALLKTLEEP----------------------------PKNTRFILITNDPSK-IL 153 (325)
T ss_pred CCCCceEEEeCcHHHHhH---HHHHHHHHHhccC----------------------------CCCeEEEEEcCChhh-cc
Confidence 36789999999999965 6778888887642 346899999995543 56
Q ss_pred hhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCccccccccccceecc
Q 002241 448 RSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGR 527 (948)
Q Consensus 448 r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~ 527 (948)
.+++++|..+.|.+ ..++..||..+ +..+..+++.+.||+|+++|.||.++..
T Consensus 154 ~tI~SRc~~i~f~~------~~~~~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~---------------- 206 (325)
T COG0470 154 PTIRSRCQRIRFKP------PSRLEAIAWLE-----DQGLEEIAAVAEGDARKAINPLQALAAL---------------- 206 (325)
T ss_pred chhhhcceeeecCC------chHHHHHHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHh----------------
Confidence 78999999999987 55666677666 7888999999999999999999999764
Q ss_pred ccccccHHHHHHHHHhcc
Q 002241 528 KDMSRSAFDIWKEIFQKR 545 (948)
Q Consensus 528 kD~~~~lf~i~~~If~~~ 545 (948)
.+.....++++..+|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~ 224 (325)
T COG0470 207 EIGEESIYEALLLALPES 224 (325)
T ss_pred cccHHHHHHHHHhhChhh
Confidence 222336677777777653
No 57
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.7e-19 Score=190.96 Aligned_cols=204 Identities=19% Similarity=0.255 Sum_probs=147.4
Q ss_pred cCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccc
Q 002241 305 STGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDG 382 (948)
Q Consensus 305 ~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~ 382 (948)
..|...+|.+|||||||||||.||+|+|++.+..|+.+.+|....+. ..-..+++.+.++. ...|+||||||||.
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAr---ekaPsIIFiDEIDA 255 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAR---EKAPSIIFIDEIDA 255 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHh---hcCCeEEEEechhh
Confidence 35677789999999999999999999999999999999999765443 22345666776654 67899999999998
Q ss_pred ccC--------CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccce
Q 002241 383 ALG--------DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIA 454 (948)
Q Consensus 383 l~~--------~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~ 454 (948)
+.+ ++...++.++++++.-.. +. ....-+.+++|||| |..+|+|-.-.++.
T Consensus 256 Ig~kR~d~~t~gDrEVQRTmleLL~qlDG-----FD----------~~~nvKVI~ATNR~------D~LDPALLRPGR~D 314 (406)
T COG1222 256 IGAKRFDSGTSGDREVQRTMLELLNQLDG-----FD----------PRGNVKVIMATNRP------DILDPALLRPGRFD 314 (406)
T ss_pred hhcccccCCCCchHHHHHHHHHHHHhccC-----CC----------CCCCeEEEEecCCc------cccChhhcCCCccc
Confidence 843 345677888888875211 10 01111123455555 77788886667799
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH----ccCCHHHHHHHHHHHHhcCccccccccccceeccccc
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY----TECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDM 530 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~----s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~kD~ 530 (948)
+.|.|+.|+.+...++|+-++.+.++. ++-.++.|+.. ++.||++++...-|++.+.... .+.+.
T Consensus 315 RkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~--------~Vt~~-- 383 (406)
T COG1222 315 RKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD--------EVTME-- 383 (406)
T ss_pred ceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC--------eecHH--
Confidence 999999999999999999999987762 33445555554 3559999999999988764432 12333
Q ss_pred cccHHHHHHHHHhcc
Q 002241 531 SRSAFDIWKEIFQKR 545 (948)
Q Consensus 531 ~~~lf~i~~~If~~~ 545 (948)
...+++.+|...+
T Consensus 384 --DF~~Av~KV~~~~ 396 (406)
T COG1222 384 --DFLKAVEKVVKKK 396 (406)
T ss_pred --HHHHHHHHHHhcc
Confidence 3456777777644
No 58
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.2e-18 Score=191.79 Aligned_cols=190 Identities=24% Similarity=0.301 Sum_probs=138.2
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
.|...++.+|||||||||||.||+++|.|+|.+++.|+|....++ +.-+++|++.+.... ...|+||||||||.+
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~---~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAK---SNAPCIVFIDEIDAI 294 (802)
T ss_pred cCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHh---ccCCeEEEeeccccc
Confidence 345557999999999999999999999999999999999988765 456778888887665 568999999999999
Q ss_pred cCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcC
Q 002241 384 LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPS 463 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~ 463 (948)
.+.++.+.+.+-..|-....+..+..... +...+.-..+++|+|| |..+|+||...++...|.+.-|+
T Consensus 295 ~pkRe~aqreMErRiVaQLlt~mD~l~~~------~~~g~~VlVIgATnRP------DslDpaLRRaGRFdrEI~l~vP~ 362 (802)
T KOG0733|consen 295 TPKREEAQREMERRIVAQLLTSMDELSNE------KTKGDPVLVIGATNRP------DSLDPALRRAGRFDREICLGVPS 362 (802)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhccccc------ccCCCCeEEEecCCCC------cccCHHHhccccccceeeecCCc
Confidence 88766555443332222111111111110 0000111135667777 88899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhc
Q 002241 464 VSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDKK 511 (948)
Q Consensus 464 ~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~~ 511 (948)
..+..++|+.||++-.+.. +-....|+..+.| |+-+.+...-++|.+
T Consensus 363 e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAik 413 (802)
T KOG0733|consen 363 ETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAAFVAIK 413 (802)
T ss_pred hHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHHHHHHH
Confidence 9999999999998766643 4567888888755 666666666666543
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=2.7e-17 Score=185.08 Aligned_cols=216 Identities=17% Similarity=0.157 Sum_probs=150.5
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
....+|-++|||++|.|++|.+.....+..++..|...
T Consensus 10 ~~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~------------------------------------------ 47 (328)
T PRK00080 10 EEEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKR------------------------------------------ 47 (328)
T ss_pred cccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 34578999999999999999999999999998753210
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHH
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTI 353 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~ 353 (948)
....+++||+|||||||||+|+++|+++|..+..++++.......+
T Consensus 48 ----------------------------------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l 93 (328)
T PRK00080 48 ----------------------------------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDL 93 (328)
T ss_pred ----------------------------------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHH
Confidence 0012579999999999999999999999999888877654443333
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCC
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLR 433 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~r 433 (948)
... +.. ...+.+|||||||.+.. ...+.|...++........... . ..+.........
T Consensus 94 ~~~----l~~-----l~~~~vl~IDEi~~l~~---~~~e~l~~~~e~~~~~~~l~~~--~--------~~~~~~~~l~~~ 151 (328)
T PRK00080 94 AAI----LTN-----LEEGDVLFIDEIHRLSP---VVEEILYPAMEDFRLDIMIGKG--P--------AARSIRLDLPPF 151 (328)
T ss_pred HHH----HHh-----cccCCEEEEecHhhcch---HHHHHHHHHHHhcceeeeeccC--c--------cccceeecCCCc
Confidence 322 211 23578999999999854 2344455555543211000000 0 000000001113
Q ss_pred cEEEEecCCCchhhhhhccc-eEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 434 PVICICNDLYAPALRSLRQI-AKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 434 PII~icNDl~~p~Lr~Lr~~-~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
-+|+++|.... ...+|+++ +..+.|.+++.+++.++|...+...++.++++++..|++.|+||.|.+.+.|+.+
T Consensus 152 ~li~at~~~~~-l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 152 TLIGATTRAGL-LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred eEEeecCCccc-CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 35666665432 11234444 4778999999999999999999999999999999999999999999999999865
No 60
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.74 E-value=1.1e-16 Score=173.27 Aligned_cols=159 Identities=27% Similarity=0.355 Sum_probs=117.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..++|+|||||||||||+.||+.. .|.+||+.|...... .+++.+..+-...++ ..+..|||||||+.+. +
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~-dvR~ife~aq~~~~l--~krkTilFiDEiHRFN---k 236 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTN-DVRDIFEQAQNEKSL--TKRKTILFIDEIHRFN---K 236 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchH-HHHHHHHHHHHHHhh--hcceeEEEeHHhhhhh---h
Confidence 579999999999999999999875 477999999776554 455555555444433 4678999999999873 3
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec---CCCchhhhhhccceEEEEecCcCHH
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN---DLYAPALRSLRQIAKVHVFIQPSVS 465 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN---Dl~~p~Lr~Lr~~~~iI~F~~p~~~ 465 (948)
..++.++-.++.+ -|++|.- +..-.....|.++|.++.+.+.+.+
T Consensus 237 sQQD~fLP~VE~G--------------------------------~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n 284 (554)
T KOG2028|consen 237 SQQDTFLPHVENG--------------------------------DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVN 284 (554)
T ss_pred hhhhcccceeccC--------------------------------ceEEEecccCCCccchhHHHHhccceeEeccCCHH
Confidence 4555566655432 1444322 2222233567889999999999999
Q ss_pred HHHHHHHHH-h-----hhc-------CCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 466 RVVSRLKHI-C-----NNE-------SMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 466 ~l~~~L~~I-~-----~~E-------gi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
.+..+|.+- + ++. .+.+++.+++.|+..|.||.|.+||.||+.
T Consensus 285 ~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems 340 (554)
T KOG2028|consen 285 AVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMS 340 (554)
T ss_pred HHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 999999872 2 221 135788999999999999999999999987
No 61
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=1.6e-15 Score=168.71 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=118.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
.++||+||||||||+||+++|++++..+..++++.......+...+.. ...+.+|||||||.+.. ...
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~~~vl~iDEi~~l~~---~~~ 98 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTN---------LEEGDVLFIDEIHRLSP---AVE 98 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHh---------cccCCEEEEehHhhhCH---HHH
Confidence 579999999999999999999999998888777654444444333221 23568999999999864 345
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccce-EEEEecCcCHHHHHHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIA-KVHVFIQPSVSRVVSR 470 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~-~iI~F~~p~~~~l~~~ 470 (948)
+.|+.+++......... . .. ..+..........+|.++|.... ...++++++ ..+.|.+++.+++.++
T Consensus 99 e~l~~~~~~~~~~~v~~-~-~~--------~~~~~~~~~~~~~li~~t~~~~~-l~~~l~sR~~~~~~l~~l~~~e~~~i 167 (305)
T TIGR00635 99 ELLYPAMEDFRLDIVIG-K-GP--------SARSVRLDLPPFTLVGATTRAGM-LTSPLRDRFGIILRLEFYTVEELAEI 167 (305)
T ss_pred HHhhHHHhhhheeeeec-c-Cc--------cccceeecCCCeEEEEecCCccc-cCHHHHhhcceEEEeCCCCHHHHHHH
Confidence 56777766433211000 0 00 00000000111224445555432 112344444 6779999999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 471 LKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 471 L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
|..++...++.++++++..|++.++||.|.+++.+..+.
T Consensus 168 l~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~ 206 (305)
T TIGR00635 168 VSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVR 206 (305)
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999988887653
No 62
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.66 E-value=1e-15 Score=182.13 Aligned_cols=195 Identities=17% Similarity=0.173 Sum_probs=123.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCCChH-HHHHHHHH----H-Hhhh------c----
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDRSSS-TIENKILD----V-VQMN------S---- 365 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~rs~~-~~~~~I~~----~-~~~~------s---- 365 (948)
.++||+||||||||++|+++.+.+ +..++++|++..+..+ .+.+.+.. . .+.. .
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~ 166 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQP 166 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccc
Confidence 578999999999999999998753 3568999987532211 11111100 0 0000 0
Q ss_pred ---ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC
Q 002241 366 ---VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL 442 (948)
Q Consensus 366 ---v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl 442 (948)
........+|+||||+.+.. ..++.|++.++.....................-+.-..........+|+.|+..
T Consensus 167 ~~G~l~~a~gG~L~IdEI~~L~~---~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~ 243 (531)
T TIGR02902 167 KPGAVTRAHGGVLFIDEIGELHP---VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN 243 (531)
T ss_pred cCchhhccCCcEEEEechhhCCH---HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCC
Confidence 01123457999999999854 678889998876432110000000000000000000000113344566665543
Q ss_pred CchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002241 443 YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 443 ~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
......+++++|..+.|++++.+++..+++..+.++++.++++++..|+.++. |.|.++|.++.++.
T Consensus 244 p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 244 PEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAG 310 (531)
T ss_pred cccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 33344667788999999999999999999999999999999999999888765 89999999998764
No 63
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.62 E-value=4.3e-15 Score=176.15 Aligned_cols=217 Identities=22% Similarity=0.272 Sum_probs=145.0
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
...+|++.....+|+|+.|.+....++..++..+..- ..| .
T Consensus 41 ~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~-------------------------------~~~-~------- 81 (495)
T TIGR01241 41 KAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNP-------------------------------SKF-T------- 81 (495)
T ss_pred ccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCH-------------------------------HHH-H-------
Confidence 4567778888889999999999988888777642210 000 0
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--H
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--T 352 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~ 352 (948)
..|.+.++.+||+||||||||++|+++|++++..++.+++++..+.. .
T Consensus 82 ------------------------------~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~ 131 (495)
T TIGR01241 82 ------------------------------KLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGV 131 (495)
T ss_pred ------------------------------hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcc
Confidence 01233457899999999999999999999999999999987643321 1
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh-----------hHHHHHHHHHHhhhccccccccccccCchhhhh
Q 002241 353 IENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK-----------GAVEVILKMVSAERKSNTAKENVAKEDQPEKIS 421 (948)
Q Consensus 353 ~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~-----------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~ 421 (948)
....+...+.... ...|+||||||||.+..... ..++.|+..++.. .
T Consensus 132 ~~~~l~~~f~~a~---~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~-------------------~ 189 (495)
T TIGR01241 132 GASRVRDLFEQAK---KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF-------------------G 189 (495)
T ss_pred cHHHHHHHHHHHH---hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc-------------------c
Confidence 1233444443322 35789999999999864221 1122222222110 0
Q ss_pred hccccccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----c
Q 002241 422 KKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----E 495 (948)
Q Consensus 422 ~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~ 495 (948)
......||++||... ++++.+-.++...|.|+.|+.+++.++|+..+...++. ++..+..|++.+ +
T Consensus 190 -------~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sg 261 (495)
T TIGR01241 190 -------TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSG 261 (495)
T ss_pred -------CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCH
Confidence 011245777788654 55665444688899999999999999999888765553 445577788764 5
Q ss_pred CCHHHHHHHHHHHHh
Q 002241 496 CDIRSCLNTLQFLDK 510 (948)
Q Consensus 496 GDIR~aIn~LQ~~~~ 510 (948)
+||+.+++..-+.+.
T Consensus 262 adl~~l~~eA~~~a~ 276 (495)
T TIGR01241 262 ADLANLLNEAALLAA 276 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 699999987655543
No 64
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.62 E-value=8.8e-15 Score=171.43 Aligned_cols=176 Identities=17% Similarity=0.230 Sum_probs=122.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|.+.++.+||+||||||||++|+++|+++|..++.++.++..++ +.-...+..++.... ...|+||+|||||.++
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~---~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE---ALSPCILWIDEIDKAF 331 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH---hcCCcEEEehhhhhhh
Confidence 45567999999999999999999999999999999998765443 223445555555332 4579999999999886
Q ss_pred CC-----ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEE
Q 002241 385 GD-----GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVH 457 (948)
Q Consensus 385 ~~-----~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI 457 (948)
.. +.+..+.++..+..... . ......||++||+.. ++++..-.++..+|
T Consensus 332 ~~~~~~~d~~~~~rvl~~lL~~l~------------------~------~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i 387 (489)
T CHL00195 332 SNSESKGDSGTTNRVLATFITWLS------------------E------KKSPVFVVATANNIDLLPLEILRKGRFDEIF 387 (489)
T ss_pred ccccCCCCchHHHHHHHHHHHHHh------------------c------CCCceEEEEecCChhhCCHHHhCCCcCCeEE
Confidence 52 12222222222211000 0 012356888999876 45554344788999
Q ss_pred EecCcCHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHc----cCCHHHHHHHHHHHH
Q 002241 458 VFIQPSVSRVVSRLKHICNNESMK-TSSIALTTLAEYT----ECDIRSCLNTLQFLD 509 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~Egi~-id~~~L~~L~e~s----~GDIR~aIn~LQ~~~ 509 (948)
.|+.|+.+++..+++..+.+.+.. .++..+..|++.+ ++||+++++..-+.+
T Consensus 388 ~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A 444 (489)
T CHL00195 388 FLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIA 444 (489)
T ss_pred EeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988875543 3456678888875 559998887665544
No 65
>PRK06893 DNA replication initiation factor; Validated
Probab=99.62 E-value=1.1e-14 Score=155.84 Aligned_cols=159 Identities=12% Similarity=0.189 Sum_probs=114.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..++|+||||||||+|++++|+++ |..++.++..... .+...+ .. ...+..+|+||||+.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~~~~~~---~~-----~~~~~dlLilDDi~~~~~~~- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---YFSPAV---LE-----NLEQQDLVCLDDLQAVIGNE- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---hhhHHH---Hh-----hcccCCEEEEeChhhhcCCh-
Confidence 468999999999999999999985 5566666654210 011111 11 12356899999999876543
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcE-EEEecCCC------chhhhhhccceEEEEecC
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPV-ICICNDLY------APALRSLRQIAKVHVFIQ 461 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPI-I~icNDl~------~p~Lr~Lr~~~~iI~F~~ 461 (948)
.....|+.+++.... ...++ |+++|... .+.|++....+.++.+.+
T Consensus 108 ~~~~~l~~l~n~~~~---------------------------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~ 160 (229)
T PRK06893 108 EWELAIFDLFNRIKE---------------------------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLND 160 (229)
T ss_pred HHHHHHHHHHHHHHH---------------------------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCC
Confidence 334467777764221 01334 45555421 244554444566899999
Q ss_pred cCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 462 PSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 462 p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
|+.+.+..+|+..|..+++.++++++..|++.+.||+|.+++.|+.+.
T Consensus 161 pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764
No 66
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.9e-15 Score=171.27 Aligned_cols=187 Identities=25% Similarity=0.338 Sum_probs=137.7
Q ss_pred cccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHH--HHHHHHHHHhhhcccccCCCcEEEecCc
Q 002241 303 TRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSST--IENKILDVVQMNSVMADSRPKCLVIDEI 380 (948)
Q Consensus 303 ~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~--~~~~I~~~~~~~sv~~~~kp~iLIIDEI 380 (948)
+...|...+-.+|||||||||||.||+++|+|+|.+++-|-.....++.. -+..++..++... .+.|||||+|||
T Consensus 537 ~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR---~saPCVIFFDEi 613 (802)
T KOG0733|consen 537 FKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRAR---ASAPCVIFFDEI 613 (802)
T ss_pred HHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhh---cCCCeEEEecch
Confidence 44567777899999999999999999999999999999999988777653 4456777777654 678999999999
Q ss_pred ccccCCC----hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEE
Q 002241 381 DGALGDG----KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKV 456 (948)
Q Consensus 381 D~l~~~~----~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~i 456 (948)
|.+.+.+ ...-..++..+........ ..+.-..+++|+|| |.-+|++-.-.++...
T Consensus 614 DaL~p~R~~~~s~~s~RvvNqLLtElDGl~--------------~R~gV~viaATNRP------DiIDpAiLRPGRlDk~ 673 (802)
T KOG0733|consen 614 DALVPRRSDEGSSVSSRVVNQLLTELDGLE--------------ERRGVYVIAATNRP------DIIDPAILRPGRLDKL 673 (802)
T ss_pred hhcCcccCCCCchhHHHHHHHHHHHhcccc--------------cccceEEEeecCCC------cccchhhcCCCccCce
Confidence 9997532 1223334443333222110 11222246788888 8888887666678999
Q ss_pred EEecCcCHHHHHHHHHHHhhhcCCCCCH-HHHHHHHHH------ccCCHHHHHHHHHHHHhcC
Q 002241 457 HVFIQPSVSRVVSRLKHICNNESMKTSS-IALTTLAEY------TECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 457 I~F~~p~~~~l~~~L~~I~~~Egi~id~-~~L~~L~e~------s~GDIR~aIn~LQ~~~~~~ 512 (948)
+.+..|+.++.+.+|+.+.+..+..+++ -.++.|+.. ++.|+-..+...-+++.+.
T Consensus 674 LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~ 736 (802)
T KOG0733|consen 674 LYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRE 736 (802)
T ss_pred eeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999976666654 347777764 4669988888777776553
No 67
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.61 E-value=5.1e-15 Score=171.02 Aligned_cols=222 Identities=19% Similarity=0.210 Sum_probs=150.1
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..++++++.+.+|.|+.|-+....++..++..+-.. +.+++
T Consensus 170 ~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~-------------------------------p~~~~-------- 210 (438)
T PTZ00361 170 SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTH-------------------------------PELYD-------- 210 (438)
T ss_pred hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhC-------------------------------HHHHH--------
Confidence 568899999999999999999999999998853210 01111
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HH
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TI 353 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~ 353 (948)
..|...++++||+||||||||++|+++|++++..++.+.+++..+.. ..
T Consensus 211 -----------------------------~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~ 261 (438)
T PTZ00361 211 -----------------------------DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDG 261 (438)
T ss_pred -----------------------------hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchH
Confidence 12333457899999999999999999999999999999988764321 12
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCC--------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccc
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG--------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~--------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~ 425 (948)
...+...+.... ...|+||+|||||.+.... ......++.++..-.. .
T Consensus 262 ~~~vr~lF~~A~---~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg-----~---------------- 317 (438)
T PTZ00361 262 PKLVRELFRVAE---ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG-----F---------------- 317 (438)
T ss_pred HHHHHHHHHHHH---hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh-----h----------------
Confidence 223444443322 4579999999999886421 1233445555543110 0
Q ss_pred cccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH----HccCCHH
Q 002241 426 CKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE----YTECDIR 499 (948)
Q Consensus 426 ~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e----~s~GDIR 499 (948)
.......||+++|... ++++..-.++...|.|+.|+..++..+|+..+.+..+. ++..+..++. .+++||+
T Consensus 318 --~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~ 394 (438)
T PTZ00361 318 --DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIK 394 (438)
T ss_pred --cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHH
Confidence 0012355888888654 34433223688899999999999999999887766553 2234455554 3567999
Q ss_pred HHHHHHHHHHhcC
Q 002241 500 SCLNTLQFLDKKK 512 (948)
Q Consensus 500 ~aIn~LQ~~~~~~ 512 (948)
.++...-+.+.+.
T Consensus 395 ~i~~eA~~~Alr~ 407 (438)
T PTZ00361 395 AICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHHHh
Confidence 9988877776554
No 68
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.60 E-value=3.4e-14 Score=152.57 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=115.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..++|+||+|||||+|++++|+++ |+.++.++..+.... . ..+.+.+ .+..+||||||+.+.+. .
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--~-~~~~~~~--------~~~dlliiDdi~~~~~~-~ 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--V-PEVLEGM--------EQLSLVCIDNIECIAGD-E 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--h-HHHHHHh--------hhCCEEEEeChhhhcCC-H
Confidence 479999999999999999999875 566777766542111 1 1111111 12368999999987653 3
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC------chhhhhhccceEEEEecCc
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY------APALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~------~p~Lr~Lr~~~~iI~F~~p 462 (948)
.....|+.+++.... .-+..+|++++... .+.|++....+.++.+.+|
T Consensus 114 ~~~~~lf~l~n~~~e--------------------------~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~ 167 (235)
T PRK08084 114 LWEMAIFDLYNRILE--------------------------SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPL 167 (235)
T ss_pred HHHHHHHHHHHHHHH--------------------------cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCC
Confidence 445567777764321 00134777777542 2344433334489999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
+.+.+..+|+..+...|+.++++++..|+..+.||+|.+++.|+.+.
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 99999999999898899999999999999999999999999998864
No 69
>PRK08727 hypothetical protein; Validated
Probab=99.60 E-value=1.9e-14 Score=154.41 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..++|+||+|||||+|++++|.+ .|+.++.+++.+ +...+...+.. ..+..+||||||+.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~------~~~~~~~~~~~-----l~~~dlLiIDDi~~l~~~~- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA------AAGRLRDALEA-----LEGRSLVALDGLESIAGQR- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH------hhhhHHHHHHH-----HhcCCEEEEeCcccccCCh-
Confidence 56999999999999999999776 478888887643 22222222221 2356799999999876543
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc---hhhhhhccc---eEEEEecCc
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---PALRSLRQI---AKVHVFIQP 462 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---p~Lr~Lr~~---~~iI~F~~p 462 (948)
.....++.+++.... ...++|++||.... ..+..|+++ +.++.|.+|
T Consensus 110 ~~~~~lf~l~n~~~~---------------------------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~ 162 (233)
T PRK08727 110 EDEVALFDFHNRARA---------------------------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVL 162 (233)
T ss_pred HHHHHHHHHHHHHHH---------------------------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCC
Confidence 344567777764221 12569999996432 112334444 889999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
+.+.+..+|+..|..+++.++++++..|++.++||+|.++|.|+.+.
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
No 70
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.3e-15 Score=172.38 Aligned_cols=187 Identities=26% Similarity=0.333 Sum_probs=138.7
Q ss_pred cccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEec
Q 002241 301 KKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVID 378 (948)
Q Consensus 301 ~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIID 378 (948)
+++...|...+|.+|||||||||||++|+++|++++.+++.|......++. .-+..|++.+..+. ...|+|||+|
T Consensus 458 e~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR---~~aP~IiFfD 534 (693)
T KOG0730|consen 458 EKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKAR---QVAPCIIFFD 534 (693)
T ss_pred HHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh---hcCCeEEehh
Confidence 345667777789999999999999999999999999999999998877764 45567777777654 4578999999
Q ss_pred CcccccCCC----hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccce
Q 002241 379 EIDGALGDG----KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIA 454 (948)
Q Consensus 379 EID~l~~~~----~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~ 454 (948)
|||.+...+ .++.+.++..+..... +. . .+|.-..++++||| |..+++|-.-.++.
T Consensus 535 EiDsi~~~R~g~~~~v~~RVlsqLLtEmD----G~--------e--~~k~V~ViAATNRp------d~ID~ALlRPGRlD 594 (693)
T KOG0730|consen 535 EIDALAGSRGGSSSGVTDRVLSQLLTEMD----GL--------E--ALKNVLVIAATNRP------DMIDPALLRPGRLD 594 (693)
T ss_pred hHHhHhhccCCCccchHHHHHHHHHHHcc----cc--------c--ccCcEEEEeccCCh------hhcCHHHcCCcccc
Confidence 999986532 2334444444443322 00 0 12223345777888 76777775555799
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCH-HHHHHHHHH----ccCCHHHHHHHHHHHHhcC
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSS-IALTTLAEY----TECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~-~~L~~L~e~----s~GDIR~aIn~LQ~~~~~~ 512 (948)
++|+++.|+.+...++|+..+++. ++++ -.|..|++. |+.||+..++....++.+.
T Consensus 595 ~iiyVplPD~~aR~~Ilk~~~kkm--p~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 595 RIIYVPLPDLEARLEILKQCAKKM--PFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred eeEeecCccHHHHHHHHHHHHhcC--CCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888764 4444 478899986 4569999998888877653
No 71
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.59 E-value=7.6e-15 Score=153.30 Aligned_cols=158 Identities=25% Similarity=0.341 Sum_probs=113.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC-
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG- 387 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~- 387 (948)
+|.+|+|||||||||.+|+++|+++...++-++|...-+. +....+|.+..+..+ ...|||++|||+|.+.-++
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~---~~aPcivFiDE~DAiaLdRr 227 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERAR---KAAPCIVFIDELDAIALDRR 227 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHH---hcCCeEEEehhhhhhhhhhh
Confidence 3899999999999999999999999999999999876543 233456666666554 5679999999999885332
Q ss_pred --------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec--CCCchhhhhhccceEEE
Q 002241 388 --------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN--DLYAPALRSLRQIAKVH 457 (948)
Q Consensus 388 --------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN--Dl~~p~Lr~Lr~~~~iI 457 (948)
...+++|+.-+.... .+.| .-.||.+| ++.++++|+ ++-..|
T Consensus 228 yQelRGDVsEiVNALLTelDgi~-------------------eneG-------VvtIaaTN~p~~LD~aiRs--RFEeEI 279 (368)
T COG1223 228 YQELRGDVSEIVNALLTELDGIK-------------------ENEG-------VVTIAATNRPELLDPAIRS--RFEEEI 279 (368)
T ss_pred HHHhcccHHHHHHHHHHhccCcc-------------------cCCc-------eEEEeecCChhhcCHHHHh--hhhhee
Confidence 133444444332111 1111 22444445 445666654 478899
Q ss_pred EecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHcc----CCHHH
Q 002241 458 VFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE----CDIRS 500 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~----GDIR~ 500 (948)
.|..|+.+++..+|...+++-.++++.. ++.|+..+. .||..
T Consensus 280 EF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdike 325 (368)
T COG1223 280 EFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKE 325 (368)
T ss_pred eeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHH
Confidence 9999999999999999999988888766 777887754 46654
No 72
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.59 E-value=2.3e-14 Score=164.55 Aligned_cols=179 Identities=21% Similarity=0.278 Sum_probs=121.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|.+.++.+||+||||||||++|+++|++++..++.+.+++..... .....+.+.+.... ...|+||||||||.+.
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~---~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLAR---ENAPSIIFIDEVDSIA 251 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHH---hcCCeEEEEECHhhhc
Confidence 444568999999999999999999999999999999877643321 22233444444322 4679999999999885
Q ss_pred CCC--------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 GDG--------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~~~--------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
... ......+..++..-.. . .......+|++||... ++++..-.++.
T Consensus 252 ~~r~~~~~~~d~~~~r~l~~LL~~ld~-----~------------------~~~~~v~VI~aTN~~d~LDpAllR~GRfd 308 (398)
T PTZ00454 252 TKRFDAQTGADREVQRILLELLNQMDG-----F------------------DQTTNVKVIMATNRADTLDPALLRPGRLD 308 (398)
T ss_pred cccccccCCccHHHHHHHHHHHHHhhc-----c------------------CCCCCEEEEEecCCchhCCHHHcCCCccc
Confidence 421 1233444555432110 0 0012345888888654 34443223688
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHhcC
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----ECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~GDIR~aIn~LQ~~~~~~ 512 (948)
..|.|+.|+.+++..+++.++.+.++. .+..+..|+..+ ++||..+++...+.+.+.
T Consensus 309 ~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 309 RKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369 (398)
T ss_pred EEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 899999999999999999988876654 234566777654 569999998888776654
No 73
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=5.4e-14 Score=159.06 Aligned_cols=159 Identities=21% Similarity=0.312 Sum_probs=116.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC------------------------------cceecCC-CCC--------ChHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH------------------------------VVEVNAS-DDR--------SSST 352 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~------------------------------viEiNaS-d~r--------s~~~ 352 (948)
..+||+||+|+||||+|+.+|+.+... +++++.. +.. +.+.
T Consensus 46 ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~ 125 (351)
T PRK09112 46 HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE 125 (351)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHH
Confidence 579999999999999999999987441 1122211 111 1233
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCC
Q 002241 353 IENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLL 432 (948)
Q Consensus 353 ~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~ 432 (948)
++ .+.+++...+ ..++..||||||+|.+. ..+.++|++.++... .+
T Consensus 126 iR-~l~~~l~~~~--~~g~~rVviIDeAd~l~---~~aanaLLk~LEEpp----------------------------~~ 171 (351)
T PRK09112 126 IR-RVGHFLSQTS--GDGNWRIVIIDPADDMN---RNAANAILKTLEEPP----------------------------AR 171 (351)
T ss_pred HH-HHHHHhhhcc--ccCCceEEEEEchhhcC---HHHHHHHHHHHhcCC----------------------------CC
Confidence 33 2333333322 24678899999999994 467889999997422 13
Q ss_pred CcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 002241 433 RPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQF 507 (948)
Q Consensus 433 rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~ 507 (948)
..+|++|+.... .+..++++|..++|.+++.+++..+|...+..++ +++..+..|++.++|+.|.+++.|+.
T Consensus 172 ~~fiLit~~~~~-llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 172 ALFILISHSSGR-LLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred ceEEEEECChhh-ccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 457888877643 4577889999999999999999999998765544 77899999999999999999987753
No 74
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.58 E-value=4.5e-14 Score=149.99 Aligned_cols=173 Identities=20% Similarity=0.198 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
-++||+||||+||||||+++|+++|.++-...+.-.-.+.++...+. .-....|||||||+.+.. ..-
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt---------~Le~~DVLFIDEIHrl~~---~vE 120 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILT---------NLEEGDVLFIDEIHRLSP---AVE 120 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHh---------cCCcCCeEEEehhhhcCh---hHH
Confidence 48999999999999999999999999887777665444444432221 124568999999999854 344
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC-chhhhhhcc-ceEEEEecCcCHHHHHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY-APALRSLRQ-IAKVHVFIQPSVSRVVS 469 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~-~p~Lr~Lr~-~~~iI~F~~p~~~~l~~ 469 (948)
+.|...+++.......+.. .+-+. +..-.-|+-+|.-... .....|||. |..+.++.-++.+++..
T Consensus 121 E~LYpaMEDf~lDI~IG~g----------p~Ars--v~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~ 188 (332)
T COG2255 121 EVLYPAMEDFRLDIIIGKG----------PAARS--IRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEE 188 (332)
T ss_pred HHhhhhhhheeEEEEEccC----------Cccce--EeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHH
Confidence 5555555543321110000 00000 1122234444422211 112245665 67777888999999999
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 470 RLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 470 ~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
++..-+..-++.++++....|+.+|.|--|-|.+.|..+
T Consensus 189 Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 189 IVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999888765
No 75
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.2e-15 Score=155.14 Aligned_cols=180 Identities=22% Similarity=0.315 Sum_probs=131.3
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHH--HHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSST--IENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~--~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
.|...++.+|||||||||||.||+++|++....++.++.|....+.. .-..+++.+.... .+.|.||||||||.+
T Consensus 184 igidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlak---enapsiifideidai 260 (408)
T KOG0727|consen 184 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAK---ENAPSIIFIDEIDAI 260 (408)
T ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHh---ccCCcEEEeehhhhH
Confidence 45556799999999999999999999999999999999986543321 1134455554433 678999999999988
Q ss_pred c--------CCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec--CCCchhhhhhccc
Q 002241 384 L--------GDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN--DLYAPALRSLRQI 453 (948)
Q Consensus 384 ~--------~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN--Dl~~p~Lr~Lr~~ 453 (948)
. +.+...++.|+++++.... . ...++.-+|+.+| |..+|+|-.-.+.
T Consensus 261 atkrfdaqtgadrevqril~ellnqmdg-----f------------------dq~~nvkvimatnradtldpallrpgrl 317 (408)
T KOG0727|consen 261 ATKRFDAQTGADREVQRILIELLNQMDG-----F------------------DQTTNVKVIMATNRADTLDPALLRPGRL 317 (408)
T ss_pred hhhhccccccccHHHHHHHHHHHHhccC-----c------------------CcccceEEEEecCcccccCHhhcCCccc
Confidence 4 2345677888888875221 1 1245667888888 4557777656678
Q ss_pred eEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH----HccCCHHHHHHHHHHHHhcC
Q 002241 454 AKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE----YTECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 454 ~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e----~s~GDIR~aIn~LQ~~~~~~ 512 (948)
.+.|.|+.|+..+..-.+..|+.+.++. ++-.|+.++. .++.||-+.+...-+.+-+.
T Consensus 318 drkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 318 DRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred cccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 9999999999888888888999887774 3334444443 36778888888777776553
No 76
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=6.5e-14 Score=160.47 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=111.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC-----------------------cceecCC-CCCChHHHHHHHHHHHhhhc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYH-----------------------VVEVNAS-DDRSSSTIENKILDVVQMNS 365 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~-----------------------viEiNaS-d~rs~~~~~~~I~~~~~~~s 365 (948)
....+||+||+|+|||++|+++|+.+.++ +..+.+. ...+.+.+++.+..+... .
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~-p 113 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARR-P 113 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhC-c
Confidence 34789999999999999999999987543 2222221 112334555444333322 2
Q ss_pred ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch
Q 002241 366 VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP 445 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p 445 (948)
..++.+|+||||+|.+.. .+.+.|++.++... ....+|++|++.. .
T Consensus 114 --~~~~~kViiIDead~m~~---~aanaLLk~LEep~----------------------------~~~~fIL~a~~~~-~ 159 (394)
T PRK07940 114 --STGRWRIVVIEDADRLTE---RAANALLKAVEEPP----------------------------PRTVWLLCAPSPE-D 159 (394)
T ss_pred --ccCCcEEEEEechhhcCH---HHHHHHHHHhhcCC----------------------------CCCeEEEEECChH-H
Confidence 245778999999999953 56788999887422 1245888888853 3
Q ss_pred hhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 002241 446 ALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTL 505 (948)
Q Consensus 446 ~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~L 505 (948)
.+..++++|..+.|.+|+.+++...|.. +++ ++++.+..++..++|+++.++..+
T Consensus 160 llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 160 VLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred ChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5567889999999999999999888862 334 578889999999999999887554
No 77
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.7e-15 Score=160.53 Aligned_cols=178 Identities=25% Similarity=0.311 Sum_probs=130.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHH--HHHHHHHHhhhcccccCCCcEEEecCcccccCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTI--ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~--~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~ 387 (948)
.++++||+||||||||.||+++|+++|.+++-+..|...++.-. +..+...+ ++...-.|++|+|||||.+++.+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvF---slAsKl~P~iIFIDEvds~L~~R 202 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVF---SLASKLQPSIIFIDEVDSFLGQR 202 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHH---hhhhhcCcceeehhhHHHHHhhc
Confidence 45899999999999999999999999999999999988776432 22233333 23336689999999999998766
Q ss_pred hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHH
Q 002241 388 KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRV 467 (948)
Q Consensus 388 ~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l 467 (948)
....+.....++......+++..+..... -.+.++++|| .|+.... +|+.+..++++.|+..+.
T Consensus 203 ~s~dHEa~a~mK~eFM~~WDGl~s~~~~r--------VlVlgATNRP-----~DlDeAi---iRR~p~rf~V~lP~~~qR 266 (386)
T KOG0737|consen 203 RSTDHEATAMMKNEFMALWDGLSSKDSER--------VLVLGATNRP-----FDLDEAI---IRRLPRRFHVGLPDAEQR 266 (386)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCce--------EEEEeCCCCC-----ccHHHHH---HHhCcceeeeCCCchhhH
Confidence 55566777777777766666554322111 1124677777 5666544 566788999999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHH
Q 002241 468 VSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQF 507 (948)
Q Consensus 468 ~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~ 507 (948)
.++|+-|+++|.+. ++-.+..|+..+.| ||+..+...-+
T Consensus 267 ~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 267 RKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred HHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 99999999999986 56667778877655 77765544433
No 78
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.57 E-value=1.8e-14 Score=159.65 Aligned_cols=172 Identities=16% Similarity=0.210 Sum_probs=115.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhccc--ccCCCcEEEecCccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVM--ADSRPKCLVIDEIDG 382 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~--~~~kp~iLIIDEID~ 382 (948)
|...+++|+|+||||||||.+|+++|+++|.+++.+++++.-++. +-+..|++.+...... ..++|+||+|||||.
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 455679999999999999999999999999999999999877653 3445566665543321 256899999999998
Q ss_pred ccCCC---hhHH------HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhc
Q 002241 383 ALGDG---KGAV------EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLR 451 (948)
Q Consensus 383 l~~~~---~~~~------~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr 451 (948)
+.+.. .+.. ..|+.++.... +....+.... .......|||+++|+.. .+.|..-.
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~G~w~~-------------~~~~~~V~VIaTTNrpd~LDpALlRpG 289 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLGGDWRE-------------KEEIPRVPIIVTGNDFSTLYAPLIRDG 289 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCc-cccccccccc-------------cccCCCceEEEeCCCcccCCHhHcCCC
Confidence 87642 1111 22333332100 0000000000 00123588999999876 44543333
Q ss_pred cceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC
Q 002241 452 QIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC 496 (948)
Q Consensus 452 ~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G 496 (948)
++... |..|+.+++..+|+.++++.++ +...+..|++...|
T Consensus 290 RfDk~--i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~g 330 (413)
T PLN00020 290 RMEKF--YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPG 330 (413)
T ss_pred CCCce--eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCC
Confidence 45553 3579999999999999988765 67899999998765
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.56 E-value=7e-14 Score=152.53 Aligned_cols=166 Identities=21% Similarity=0.210 Sum_probs=111.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---C----CCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---G----YHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G----~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
..++||+|||||||||+|+++|+++ | ..++++++++..+.. .....+.+.+. .....||||||||
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~------~a~~~VL~IDE~~ 115 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIK------KALGGVLFIDEAY 115 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHH------hccCCEEEEechh
Confidence 3689999999999999999999975 2 367777777654331 11223333332 1235799999999
Q ss_pred cccCCC-----hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc--hh---hhhhc
Q 002241 382 GALGDG-----KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA--PA---LRSLR 451 (948)
Q Consensus 382 ~l~~~~-----~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~--p~---Lr~Lr 451 (948)
.+..+. ...++.|+..+.... ...++++++.... +. -..++
T Consensus 116 ~L~~~~~~~~~~~~i~~Ll~~~e~~~-----------------------------~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 116 SLARGGEKDFGKEAIDTLVKGMEDNR-----------------------------NEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred hhccCCccchHHHHHHHHHHHHhccC-----------------------------CCEEEEecCCcchhHHHHhcChHHH
Confidence 986422 234555555553211 1223322222111 10 12344
Q ss_pred cc-eEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH----------ccCCHHHHHHHHHHHHhc
Q 002241 452 QI-AKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY----------TECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 452 ~~-~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~----------s~GDIR~aIn~LQ~~~~~ 511 (948)
++ ...|+|+.++.+++.++++.+|...++.++++++..|.+. +.||.|.+.|.++.+..+
T Consensus 167 sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 167 SRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred hccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 44 4789999999999999999999999999999999888653 369999999999987654
No 80
>CHL00176 ftsH cell division protein; Validated
Probab=99.55 E-value=6.1e-14 Score=169.18 Aligned_cols=176 Identities=21% Similarity=0.240 Sum_probs=120.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
..++.+||+||||||||++|+++|.++|..++.+++++..... .....+...+.... ...|+||||||||.+...
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~---~~~P~ILfIDEID~l~~~ 290 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAK---ENSPCIVFIDEIDAVGRQ 290 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHh---cCCCcEEEEecchhhhhc
Confidence 3457899999999999999999999999999999988754321 11233444444322 467999999999988532
Q ss_pred --------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEE
Q 002241 387 --------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKV 456 (948)
Q Consensus 387 --------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~i 456 (948)
.......|..++..-.. . . .....-+|++||... ++++..-.++...
T Consensus 291 r~~~~~~~~~e~~~~L~~LL~~~dg-----~-----------~-------~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~ 347 (638)
T CHL00176 291 RGAGIGGGNDEREQTLNQLLTEMDG-----F-----------K-------GNKGVIVIAATNRVDILDAALLRPGRFDRQ 347 (638)
T ss_pred ccCCCCCCcHHHHHHHHHHHhhhcc-----c-----------c-------CCCCeeEEEecCchHhhhhhhhccccCceE
Confidence 11222333333321100 0 0 011234777888754 4555444468889
Q ss_pred EEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhc
Q 002241 457 HVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDKK 511 (948)
Q Consensus 457 I~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~~ 511 (948)
|.|..|+.+++..+|+.++....+ .++..+..|+..+.| ||+.++|.+-..+.+
T Consensus 348 I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r 405 (638)
T CHL00176 348 ITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTAR 405 (638)
T ss_pred EEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887444 356778899988766 999999977665543
No 81
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.55 E-value=3.9e-13 Score=160.69 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=119.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCCChHHHHHHHHHHHhh-------------hccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDRSSSTIENKILDVVQM-------------NSVM 367 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~rs~~~~~~~I~~~~~~-------------~sv~ 367 (948)
.++|+|+|+||||||++++.+++++ .+.+++||+....+...+...|...+.. ..++
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF 860 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHH
Confidence 3678899999999999999998876 2678999998777766555544433310 0000
Q ss_pred -----ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC
Q 002241 368 -----ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL 442 (948)
Q Consensus 368 -----~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl 442 (948)
......||||||||.+.... ...|+.++..... .....-||+|+|+.
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK~---QDVLYnLFR~~~~-------------------------s~SKLiLIGISNdl 912 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKT---QKVLFTLFDWPTK-------------------------INSKLVLIAISNTM 912 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCccH---HHHHHHHHHHhhc-------------------------cCCeEEEEEecCch
Confidence 12235699999999997642 3456666553111 01124488999976
Q ss_pred Cchh--hhhhccce--EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH---HccCCHHHHHHHHHHHHh
Q 002241 443 YAPA--LRSLRQIA--KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE---YTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 443 ~~p~--Lr~Lr~~~--~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e---~s~GDIR~aIn~LQ~~~~ 510 (948)
..+. +..++.++ ..|.|.+++.+++..+|...+....-.++++++..+|+ ...||+|.||..|..+..
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 5322 23344433 34889999999999999988775434589999999998 567999999999988764
No 82
>PRK06620 hypothetical protein; Validated
Probab=99.54 E-value=1.8e-13 Score=144.81 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=104.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
+.++||||||||||||++++|+..+..++. .... . . .. .....+|+|||||.+. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~--~----~---~~--------~~~~d~lliDdi~~~~------~ 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF--N----E---EI--------LEKYNAFIIEDIENWQ------E 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh--c----h---hH--------HhcCCEEEEeccccch------H
Confidence 679999999999999999999988753322 1100 0 0 11 1234799999999651 1
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC----chhhhhhccceEEEEecCcCHHHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY----APALRSLRQIAKVHVFIQPSVSRV 467 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~----~p~Lr~Lr~~~~iI~F~~p~~~~l 467 (948)
..|+.+++.-.. ....+|+++.... .+.|++....+.++.+.+|+.+.+
T Consensus 100 ~~lf~l~N~~~e---------------------------~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 100 PALLHIFNIINE---------------------------KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELI 152 (214)
T ss_pred HHHHHHHHHHHh---------------------------cCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHH
Confidence 345555553221 0123555544221 134444444556999999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 468 VSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 468 ~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
..+|+..+...|+.++++++..|++.+.||+|.+++.|+.+.
T Consensus 153 ~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 153 KILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999899999999999999999999999999999864
No 83
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.54 E-value=1.2e-13 Score=158.96 Aligned_cols=179 Identities=20% Similarity=0.274 Sum_probs=120.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|...++.+|||||||||||++|+++|++++..++.+++++..... .....+...+.... ...|+||||||||.+.
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~---~~~p~IlfiDEiD~l~ 237 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAR---EKAPSIIFIDEIDAIA 237 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHH---hcCCeEEEEechhhhh
Confidence 444568999999999999999999999999999999988764321 22234444444332 3578999999999985
Q ss_pred CCC--------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 GDG--------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~~~--------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
... ......+..++..... . ....+..||+++|... ++++..-.++.
T Consensus 238 ~~r~~~~~~~~~~~~~~l~~lL~~ld~-----~------------------~~~~~v~VI~aTn~~~~ld~allRpgRfd 294 (389)
T PRK03992 238 AKRTDSGTSGDREVQRTLMQLLAEMDG-----F------------------DPRGNVKIIAATNRIDILDPAILRPGRFD 294 (389)
T ss_pred cccccCCCCccHHHHHHHHHHHHhccc-----c------------------CCCCCEEEEEecCChhhCCHHHcCCccCc
Confidence 321 2233445555432110 0 0011356888888754 34443223578
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHhcC
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----ECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~GDIR~aIn~LQ~~~~~~ 512 (948)
..|.|+.|+.+++.++|+..+.+..+. .+..+..|+..+ ++||+.+++..-+.+.+.
T Consensus 295 ~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 295 RIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred eEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 889999999999999999888765543 124466677654 569999988887776543
No 84
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-14 Score=162.92 Aligned_cols=202 Identities=20% Similarity=0.221 Sum_probs=135.6
Q ss_pred CCCcccccccccccchhhhh--cccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC--hHHHHHH
Q 002241 281 NSNNLEYENSNSKGIQDSWH--KKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS--SSTIENK 356 (948)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~--~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs--~~~~~~~ 356 (948)
|..+.|.-...++++.+++. .++...|...+|.+||+||||||||.||+++|-|+|..++....|..-- ....-.+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArR 384 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARR 384 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHH
Confidence 44444444444555555543 3577788889999999999999999999999999999999998886432 2334456
Q ss_pred HHHHHhhhcccccCCCcEEEecCcccccCCCh----hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCC
Q 002241 357 ILDVVQMNSVMADSRPKCLVIDEIDGALGDGK----GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLL 432 (948)
Q Consensus 357 I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~----~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~ 432 (948)
+++.+.... ...||||||||||.+-+.+. .-.+..+..+..+.. .+..+
T Consensus 385 VRdLF~aAk---~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD------------------------GF~qN 437 (752)
T KOG0734|consen 385 VRDLFAAAK---ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD------------------------GFKQN 437 (752)
T ss_pred HHHHHHHHH---hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc------------------------CcCcC
Confidence 677666543 56799999999999865421 111222222211111 11222
Q ss_pred CcEEEE--ec--CCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCC-HHHHHHHHHH----ccCCHHHHHH
Q 002241 433 RPVICI--CN--DLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTS-SIALTTLAEY----TECDIRSCLN 503 (948)
Q Consensus 433 rPII~i--cN--Dl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id-~~~L~~L~e~----s~GDIR~aIn 503 (948)
-+||+| +| +..+++|-.-.+|...|.++.|+..-..++|...+.+ +..+ +-++..|+.. ++.|+-..+|
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 334444 33 3446666666779999999999999999999988866 4444 3456667765 4569999999
Q ss_pred HHHHHHhc
Q 002241 504 TLQFLDKK 511 (948)
Q Consensus 504 ~LQ~~~~~ 511 (948)
..-..+..
T Consensus 516 qAAlkAa~ 523 (752)
T KOG0734|consen 516 QAALKAAV 523 (752)
T ss_pred HHHHHHHh
Confidence 87666543
No 85
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.53 E-value=1.4e-13 Score=146.22 Aligned_cols=159 Identities=17% Similarity=0.196 Sum_probs=114.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..++|+||+|||||++|+.+++++ +..++.+++++.... ..+.+.. ..+..+|+|||+|.+....
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~-----~~~~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA------DPEVLEG-----LEQADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh------HHHHHhh-----cccCCEEEEeChhhhcCCh-
Confidence 689999999999999999999986 577888888654321 1122211 1235699999999885432
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc------hhhhhhccceEEEEecCc
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA------PALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~------p~Lr~Lr~~~~iI~F~~p 462 (948)
...+.|..+++.... ...++|++||.... +.+......+..+.++++
T Consensus 107 ~~~~~L~~~l~~~~~---------------------------~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l 159 (226)
T TIGR03420 107 EWQEALFHLYNRVRE---------------------------AGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPL 159 (226)
T ss_pred HHHHHHHHHHHHHHH---------------------------cCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCC
Confidence 234566666653211 12368888875321 233322223578999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
+.+++..+|..++.+.++.++++++..|+..+.|++|.+.+.|+-+.
T Consensus 160 ~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 160 SDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD 206 (226)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999998999999999999999999999999998887653
No 86
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4e-14 Score=146.95 Aligned_cols=184 Identities=23% Similarity=0.310 Sum_probs=133.4
Q ss_pred cCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccc
Q 002241 305 STGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDG 382 (948)
Q Consensus 305 ~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~ 382 (948)
..|...+|.+|||||||+|||.||+++|.+..+.++.+..|....+. .....+++.+-+.. ...|.|||+||||.
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmar---ehapsiifmdeids 251 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR---EHAPSIIFMDEIDS 251 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHH---hcCCceEeeecccc
Confidence 46788889999999999999999999999999999999887654332 22233444444443 56799999999998
Q ss_pred ccC--------CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec--CCCchhhhhhcc
Q 002241 383 ALG--------DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN--DLYAPALRSLRQ 452 (948)
Q Consensus 383 l~~--------~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN--Dl~~p~Lr~Lr~ 452 (948)
+.+ ++...++..+++++.-.. . . ..-+.-+|+.+| |+.+|+|-.-.+
T Consensus 252 igs~r~e~~~ggdsevqrtmlellnqldg-----f--------e----------atknikvimatnridild~allrpgr 308 (404)
T KOG0728|consen 252 IGSSRVESGSGGDSEVQRTMLELLNQLDG-----F--------E----------ATKNIKVIMATNRIDILDPALLRPGR 308 (404)
T ss_pred cccccccCCCCccHHHHHHHHHHHHhccc-----c--------c----------cccceEEEEeccccccccHhhcCCCc
Confidence 843 123456677777764211 0 0 112344777777 556788766677
Q ss_pred ceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH----ccCCHHHHHHHHHHHHhcCccc
Q 002241 453 IAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY----TECDIRSCLNTLQFLDKKKEIL 515 (948)
Q Consensus 453 ~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~----s~GDIR~aIn~LQ~~~~~~~~~ 515 (948)
+.+.|.|++|+.+...++|+-..++.++. ---.+..|++. ++.++..++...-+++.+...+
T Consensus 309 idrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm~alrerrv 374 (404)
T KOG0728|consen 309 IDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRV 374 (404)
T ss_pred ccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhc
Confidence 99999999999999999999888775541 22346677775 5668999999888888776554
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.52 E-value=2.8e-13 Score=144.48 Aligned_cols=153 Identities=15% Similarity=0.171 Sum_probs=111.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..++|+||+|||||+||+++++++ |..++.+++.+... .+ . ......+|||||+|.+..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------~~----~-----~~~~~~~liiDdi~~l~~--- 104 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------AF----D-----FDPEAELYAVDDVERLDD--- 104 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------HH----h-----hcccCCEEEEeChhhcCc---
Confidence 579999999999999999999975 77888888865321 11 1 023467999999998754
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchh---hhhhc---cceEEEEecCc
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPA---LRSLR---QIAKVHVFIQP 462 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~---Lr~Lr---~~~~iI~F~~p 462 (948)
.....|+.+++.... ...++|++|++..... ...|+ ..+..+.+++|
T Consensus 105 ~~~~~L~~~~~~~~~---------------------------~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl 157 (227)
T PRK08903 105 AQQIALFNLFNRVRA---------------------------HGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPL 157 (227)
T ss_pred hHHHHHHHHHHHHHH---------------------------cCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCC
Confidence 344566666653211 1234444444432111 12233 23689999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
+......+|..++..+++.++++++..|+..+.||+|.+++.|+.+.
T Consensus 158 ~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 158 SDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888764
No 88
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=2.2e-13 Score=155.35 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=113.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---------CCcceecCCCCCChHHHHHHHHHHHhh-------------------
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG---------YHVVEVNASDDRSSSTIENKILDVVQM------------------- 363 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG---------~~viEiNaSd~rs~~~~~~~I~~~~~~------------------- 363 (948)
..++|+||||+|||++++.+++++. +.++++|+....+...+...|...+..
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 120 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRL 120 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHH
Confidence 5799999999999999999998763 678999998877765555555444420
Q ss_pred -hcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC
Q 002241 364 -NSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL 442 (948)
Q Consensus 364 -~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl 442 (948)
..+...+++.||||||+|.+.......+..|+.+..... ....+..+|+++|+.
T Consensus 121 ~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~-------------------------~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 121 YKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD-------------------------LDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-------------------------CCCCeEEEEEEECCc
Confidence 001113557899999999997433333333333211000 001235689999986
Q ss_pred Cch-hh-hhhcc-c-eEEEEecCcCHHHHHHHHHHHhhh--cCCCCCHHHHHHHH---HHccCCHHHHHHHHHHHH
Q 002241 443 YAP-AL-RSLRQ-I-AKVHVFIQPSVSRVVSRLKHICNN--ESMKTSSIALTTLA---EYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 443 ~~p-~L-r~Lr~-~-~~iI~F~~p~~~~l~~~L~~I~~~--Egi~id~~~L~~L~---e~s~GDIR~aIn~LQ~~~ 509 (948)
... .+ ..+.+ + ...+.|.+++.+++..+|+..+.. .+..++++++..++ ..+.||+|.+++.|..+.
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 532 11 11222 2 257899999999999999987752 22347787766654 456799999999988764
No 89
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.9e-14 Score=168.30 Aligned_cols=208 Identities=23% Similarity=0.263 Sum_probs=144.5
Q ss_pred CCCcccccccccccchhhhh--cccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHH
Q 002241 281 NSNNLEYENSNSKGIQDSWH--KKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENK 356 (948)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~--~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~ 356 (948)
|..+.+.-..+++++..++. +++...|...+|.+||+||||||||.||+|+|.|+|..++-+++|+.... ...-.+
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asr 391 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASR 391 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHH
Confidence 33333333333444444442 34777899899999999999999999999999999999999999975322 112345
Q ss_pred HHHHHhhhcccccCCCcEEEecCcccccCCCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhcccccc
Q 002241 357 ILDVVQMNSVMADSRPKCLVIDEIDGALGDGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428 (948)
Q Consensus 357 I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~ 428 (948)
+++.++... ...|+||+|||||.+..... ...+..+..+..... +.. .
T Consensus 392 vr~lf~~ar---~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD----gf~-----------~------ 447 (774)
T KOG0731|consen 392 VRDLFPLAR---KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD----GFE-----------T------ 447 (774)
T ss_pred HHHHHHHhh---ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc----CCc-----------C------
Confidence 666666544 57899999999998753221 111222222221111 000 0
Q ss_pred ccCCCcEEEEec--CCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----cCCHHHHH
Q 002241 429 ASLLRPVICICN--DLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----ECDIRSCL 502 (948)
Q Consensus 429 ~~~~rPII~icN--Dl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~GDIR~aI 502 (948)
....-+++.|| |..+++|....++.+.|++..|+.....++++..+.+-.+..++..+..|+..+ +.||..++
T Consensus 448 -~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 448 -SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred -CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 01133445555 666888877788999999999999999999999988877777888888899875 45999999
Q ss_pred HHHHHHHhcCc
Q 002241 503 NTLQFLDKKKE 513 (948)
Q Consensus 503 n~LQ~~~~~~~ 513 (948)
|.+...+.+..
T Consensus 527 neaa~~a~r~~ 537 (774)
T KOG0731|consen 527 NEAALLAARKG 537 (774)
T ss_pred hHHHHHHHHhc
Confidence 99988876643
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.49 E-value=2.5e-13 Score=159.32 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhhhcc-cccCCCcEEEecCcccccC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQMNSV-MADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv-~~~~kp~iLIIDEID~l~~ 385 (948)
+.++||||+|+|||+|++++|+++ +..++.+++.+... .+...+.... ...+ ....+..||||||||.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN--DFVNALRNNT-MEEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH--HHHHHHHcCc-HHHHHHHHhcCCEEEEehhhhhcC
Confidence 679999999999999999999987 67788998865421 1111111100 0000 0123578999999998755
Q ss_pred CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC------chhhhhhccceEEEEe
Q 002241 386 DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY------APALRSLRQIAKVHVF 459 (948)
Q Consensus 386 ~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~------~p~Lr~Lr~~~~iI~F 459 (948)
. ......|+.+++.-.. ...++|++||... .+.|++....+.++.|
T Consensus 226 ~-~~~~~~l~~~~n~l~~---------------------------~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i 277 (450)
T PRK00149 226 K-ERTQEEFFHTFNALHE---------------------------AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDI 277 (450)
T ss_pred C-HHHHHHHHHHHHHHHH---------------------------CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEe
Confidence 3 2345567776654221 1245788877642 2233332334578999
Q ss_pred cCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 460 IQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 460 ~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
.+|+.+.+..+|+..+...++.++++++..|++.+.||+|.++..|..+
T Consensus 278 ~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l 326 (450)
T PRK00149 278 EPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRL 326 (450)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999866665544
No 91
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.48 E-value=3e-13 Score=167.70 Aligned_cols=178 Identities=22% Similarity=0.263 Sum_probs=118.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
...++.+|||||||||||++|+++|++++.+++.+++++..++. ..+..+...+.... ...|+||||||||.+..
T Consensus 484 ~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~---~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 484 IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKAR---QAAPAIIFFDEIDAIAP 560 (733)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHH---hcCCEEEEEEChhhhhc
Confidence 33457899999999999999999999999999999998765542 33445666665433 46789999999999864
Q ss_pred CC-----hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEEE
Q 002241 386 DG-----KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHV 458 (948)
Q Consensus 386 ~~-----~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~ 458 (948)
.. .+..+.++..+...... . ....+.-||+++|... ++++..-.++...|.
T Consensus 561 ~r~~~~~~~~~~~~~~~lL~~ldg----~------------------~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~ 618 (733)
T TIGR01243 561 ARGARFDTSVTDRIVNQLLTEMDG----I------------------QELSNVVVIAATNRPDILDPALLRPGRFDRLIL 618 (733)
T ss_pred cCCCCCCccHHHHHHHHHHHHhhc----c------------------cCCCCEEEEEeCCChhhCCHhhcCCCccceEEE
Confidence 32 12222222222111100 0 0011345777888754 445433336889999
Q ss_pred ecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Q 002241 459 FIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 459 F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~GDIR~aIn~LQ~~~~~ 511 (948)
|+.|+.+++.++|+....+..+. ++..+..|++.+ +.||..+++...+.+.+
T Consensus 619 v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~ 674 (733)
T TIGR01243 619 VPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMAALR 674 (733)
T ss_pred eCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998776554332 234577777765 45888888766665543
No 92
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.48 E-value=5.8e-13 Score=152.16 Aligned_cols=177 Identities=19% Similarity=0.261 Sum_probs=115.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
...++.+||+||||||||++|+++|++++..++.+.+++.... ......+...+... ....|+||||||||.+..
T Consensus 153 ~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a---~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 153 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELA---KEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHH---HhcCCcEEEhhhhhhhcc
Confidence 3445789999999999999999999999999998877654322 11222333443322 245789999999999854
Q ss_pred C--------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceE
Q 002241 386 D--------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAK 455 (948)
Q Consensus 386 ~--------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~ 455 (948)
. +......+..++..... . ....+..||+++|... ++.+..-.++..
T Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~~ld~-----~------------------~~~~~v~vI~ttn~~~~ld~al~r~grfd~ 286 (364)
T TIGR01242 230 KRTDSGTSGDREVQRTLMQLLAELDG-----F------------------DPRGNVKVIAATNRPDILDPALLRPGRFDR 286 (364)
T ss_pred ccccCCCCccHHHHHHHHHHHHHhhC-----C------------------CCCCCEEEEEecCChhhCChhhcCcccCce
Confidence 2 12233445555532110 0 0012355888888754 344432235778
Q ss_pred EEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Q 002241 456 VHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 456 iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~GDIR~aIn~LQ~~~~~ 511 (948)
.|.|+.|+.++..++|+..+.+..+. ++..+..|+..+ ++||+.+++...+.+.+
T Consensus 287 ~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 287 IIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred EEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999877654443 123456666655 34999888877776644
No 93
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.47 E-value=4.3e-13 Score=157.25 Aligned_cols=192 Identities=17% Similarity=0.187 Sum_probs=120.9
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
.|-++++.+.+|.|+.|-+...+.+..++...-.. +..+
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~-------------------------------~~l~---------- 208 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLH-------------------------------PELY---------- 208 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhC-------------------------------HHHH----------
Confidence 45567888999999999999999999988852110 0000
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCc----------ceecCCC
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHV----------VEVNASD 346 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~v----------iEiNaSd 346 (948)
...|.+.++.+|||||||||||++|+++|++++..+ +.+..++
T Consensus 209 ---------------------------~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 209 ---------------------------REYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred ---------------------------HhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 112444568899999999999999999999987652 2333333
Q ss_pred CCCh--HHHHHHHHHHHhhhcc-cccCCCcEEEecCcccccCCCh-----hH----HHHHHHHHHhhhcccccccccccc
Q 002241 347 DRSS--STIENKILDVVQMNSV-MADSRPKCLVIDEIDGALGDGK-----GA----VEVILKMVSAERKSNTAKENVAKE 414 (948)
Q Consensus 347 ~rs~--~~~~~~I~~~~~~~sv-~~~~kp~iLIIDEID~l~~~~~-----~~----~~~Ll~li~~~~~~~~~~~~~~~~ 414 (948)
..++ ......+...++.... ...++|+||||||||.++..+. .. +..|+..+...
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl------------- 328 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV------------- 328 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc-------------
Confidence 2222 1222334433332211 1245799999999999864321 11 12233322210
Q ss_pred CchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCC
Q 002241 415 DQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTS 483 (948)
Q Consensus 415 ~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id 483 (948)
....+..||+++|... ++++..-.++...|.|..|+.+++..+|+.++.. .++++
T Consensus 329 -------------~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~ 385 (512)
T TIGR03689 329 -------------ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD 385 (512)
T ss_pred -------------ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence 0012356778888654 5555433368889999999999999999987753 45553
No 94
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.6e-13 Score=158.95 Aligned_cols=185 Identities=22% Similarity=0.322 Sum_probs=135.4
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
.|-..+..+|||||||||||-+|+|+|.|+..+++-+.....-+.. .-++.+++.++.+. ..+|||||+||+|.+
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR---~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERAR---SAAPCVIFFDELDSL 776 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhh---ccCCeEEEecccccc
Confidence 3445568999999999999999999999999999999887765543 44566777776554 578999999999999
Q ss_pred cC------CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEE
Q 002241 384 LG------DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVH 457 (948)
Q Consensus 384 ~~------~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI 457 (948)
.+ +..|.++.++..+.++....+.. +++.-..+++++|| |+.+|+|-.-.+|...+
T Consensus 777 AP~RG~sGDSGGVMDRVVSQLLAELDgls~~------------~s~~VFViGATNRP------DLLDpALLRPGRFDKLv 838 (953)
T KOG0736|consen 777 APNRGRSGDSGGVMDRVVSQLLAELDGLSDS------------SSQDVFVIGATNRP------DLLDPALLRPGRFDKLV 838 (953)
T ss_pred CccCCCCCCccccHHHHHHHHHHHhhcccCC------------CCCceEEEecCCCc------cccChhhcCCCccceeE
Confidence 64 33467777776666544322110 22333457889999 99999987777799988
Q ss_pred EecCc-CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH-----ccCCHHHHHHHHHHHHhcC
Q 002241 458 VFIQP-SVSRVVSRLKHICNNESMKTSSIALTTLAEY-----TECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 458 ~F~~p-~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~-----s~GDIR~aIn~LQ~~~~~~ 512 (948)
.+..+ +.+.-..+|+.+.++-.+. .+-.|..|++. ++.|+-+.+.+.-+.+.++
T Consensus 839 yvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 839 YVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred EecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHH
Confidence 88776 4456667777777775543 23457778876 4789999888877766554
No 95
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.5e-12 Score=148.11 Aligned_cols=159 Identities=15% Similarity=0.204 Sum_probs=110.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC----------------------------------cceecC--CCCCC---hHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH----------------------------------VVEVNA--SDDRS---SST 352 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~----------------------------------viEiNa--Sd~rs---~~~ 352 (948)
..+||+||+|+||+|+|..+|+.+-.. ++.+.. .+... ...
T Consensus 42 HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I 121 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVI 121 (365)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccc
Confidence 579999999999999999999976321 112211 11110 111
Q ss_pred HHHHHHHHHhhhccc-ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccC
Q 002241 353 IENKILDVVQMNSVM-ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASL 431 (948)
Q Consensus 353 ~~~~I~~~~~~~sv~-~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~ 431 (948)
..+.|++.....+.. ..+.+.||||||+|.+. ..+.+.|++.++... .
T Consensus 122 ~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~---~~aanaLLK~LEepp----------------------------~ 170 (365)
T PRK07471 122 TVDEVRELISFFGLTAAEGGWRVVIVDTADEMN---ANAANALLKVLEEPP----------------------------A 170 (365)
T ss_pred cHHHHHHHHHHhCcCcccCCCEEEEEechHhcC---HHHHHHHHHHHhcCC----------------------------C
Confidence 123344433322222 34678999999999984 478889999987422 1
Q ss_pred CCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 002241 432 LRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506 (948)
Q Consensus 432 ~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ 506 (948)
..-+|++|++... .+..++++|..+.|.+++.+++.+.|.... ...+...+..++..++|+++.+++.++
T Consensus 171 ~~~~IL~t~~~~~-llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 171 RSLFLLVSHAPAR-LLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred CeEEEEEECCchh-chHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 2347888887764 456678999999999999999999887643 334556668889999999999988764
No 96
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.45 E-value=7.8e-13 Score=137.03 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=108.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cceecCC-CCCChHHHHHHHHHHHhhhc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH------------------------VVEVNAS-DDRSSSTIENKILDVVQMNS 365 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~------------------------viEiNaS-d~rs~~~~~~~I~~~~~~~s 365 (948)
...+||+||+|+|||++|+.+|+.+... +..+... ...+.+.++..+ +.+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~-~~~~~~~ 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELV-EFLSRTP 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHH-HHHccCc
Confidence 4689999999999999999999986431 2222221 122334555434 3333332
Q ss_pred ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch
Q 002241 366 VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP 445 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p 445 (948)
. .+...||||||+|.+.. .+++.|++.++... ...-+|++||+. ..
T Consensus 93 ~--~~~~kviiide~~~l~~---~~~~~Ll~~le~~~----------------------------~~~~~il~~~~~-~~ 138 (188)
T TIGR00678 93 Q--ESGRRVVIIEDAERMNE---AAANALLKTLEEPP----------------------------PNTLFILITPSP-EK 138 (188)
T ss_pred c--cCCeEEEEEechhhhCH---HHHHHHHHHhcCCC----------------------------CCeEEEEEECCh-Hh
Confidence 2 35678999999999854 56788888886421 123488888876 33
Q ss_pred hhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHH
Q 002241 446 ALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSC 501 (948)
Q Consensus 446 ~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~a 501 (948)
.+..++++|.++.|.+++.+++.++|... | ++++++..|++.++||+|.|
T Consensus 139 l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 139 LLPTIRSRCQVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred ChHHHHhhcEEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 55668889999999999999998888765 4 68999999999999999974
No 97
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.1e-13 Score=144.80 Aligned_cols=207 Identities=20% Similarity=0.211 Sum_probs=143.5
Q ss_pred cccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHH--HHHHHHHHHhhhcccccCCCcEEEecCc
Q 002241 303 TRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSST--IENKILDVVQMNSVMADSRPKCLVIDEI 380 (948)
Q Consensus 303 ~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~--~~~~I~~~~~~~sv~~~~kp~iLIIDEI 380 (948)
+-..|...+|.+|||||||+|||.+|+++|+..+..++.+-.|....+.. ....+++.++|.. ..+-+|||+|||
T Consensus 203 fv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar---tkkaciiffdei 279 (435)
T KOG0729|consen 203 FVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR---TKKACIIFFDEI 279 (435)
T ss_pred HhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc---ccceEEEEeecc
Confidence 34467777899999999999999999999999999999998887655433 3345777777765 567889999999
Q ss_pred ccccC--------CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhcc
Q 002241 381 DGALG--------DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQ 452 (948)
Q Consensus 381 D~l~~--------~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~ 452 (948)
|.+.+ ++...++..+++++.-.. .. ....-+....++|| |..+|+|-.-.+
T Consensus 280 daiggarfddg~ggdnevqrtmleli~qldg-----fd----------prgnikvlmatnrp------dtldpallrpgr 338 (435)
T KOG0729|consen 280 DAIGGARFDDGAGGDNEVQRTMLELINQLDG-----FD----------PRGNIKVLMATNRP------DTLDPALLRPGR 338 (435)
T ss_pred ccccCccccCCCCCcHHHHHHHHHHHHhccC-----CC----------CCCCeEEEeecCCC------CCcCHhhcCCcc
Confidence 98753 224556677788764211 00 00111124566777 666777766667
Q ss_pred ceEEEEecCcCHHHHHHHHHHHhhhcCC--CCCHHHHHHHHHH-ccCCHHHHHHHHHHHHhcCccccccccccceecccc
Q 002241 453 IAKVHVFIQPSVSRVVSRLKHICNNESM--KTSSIALTTLAEY-TECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKD 529 (948)
Q Consensus 453 ~~~iI~F~~p~~~~l~~~L~~I~~~Egi--~id~~~L~~L~e~-s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~kD 529 (948)
+.+.+.|..|+.+-...+++-.++...+ .+--+.|..||-. ++.+||+++...-+++.+.... +...|
T Consensus 339 ldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk--------~atek- 409 (435)
T KOG0729|consen 339 LDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK--------VATEK- 409 (435)
T ss_pred cccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh--------hhhHH-
Confidence 8999999999999998888766655433 2234556666643 4679999998888877553221 11223
Q ss_pred ccccHHHHHHHHHhcc
Q 002241 530 MSRSAFDIWKEIFQKR 545 (948)
Q Consensus 530 ~~~~lf~i~~~If~~~ 545 (948)
...+++++|.+..
T Consensus 410 ---dfl~av~kvvkgy 422 (435)
T KOG0729|consen 410 ---DFLDAVNKVVKGY 422 (435)
T ss_pred ---HHHHHHHHHHHHH
Confidence 5678888887653
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=99.45 E-value=1.5e-12 Score=139.74 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=117.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
+.++|+||+|+|||+|++++|+++ |..++.+++.+.... . ..+.+.+ ....+|+||||+.+.+. .
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--~-~~~~~~~--------~~~d~LiiDDi~~~~~~-~ 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--G-PELLDNL--------EQYELVCLDDLDVIAGK-A 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--h-HHHHHhh--------hhCCEEEEechhhhcCC-h
Confidence 679999999999999999999764 788888888653221 0 1111111 23469999999977543 2
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC------chhhhhhccceEEEEecCc
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY------APALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~------~p~Lr~Lr~~~~iI~F~~p 462 (948)
.....|+.+++.-.. ..+++|++|+... .+.|++....+.++.+.+|
T Consensus 114 ~~~~~Lf~l~n~~~~---------------------------~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~ 166 (234)
T PRK05642 114 DWEEALFHLFNRLRD---------------------------SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGL 166 (234)
T ss_pred HHHHHHHHHHHHHHh---------------------------cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCC
Confidence 334668888875321 1256777777421 2444444334588999999
Q ss_pred CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
+.+.+..+|+..|...|+.++++++..|++.+.||+|.+++.|+.+.
T Consensus 167 ~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 167 SDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999997788889999999999999999999999999988774
No 99
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-12 Score=147.77 Aligned_cols=140 Identities=18% Similarity=0.234 Sum_probs=100.1
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
.|+|-+|..||||||||||||++.|+|++++|+|+-++-+....-+.++..+.. .....||||+|||..+.
T Consensus 230 vGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~---------t~~kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 230 VGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLA---------TPNKSILLIEDIDCSFD 300 (457)
T ss_pred cCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHh---------CCCCcEEEEeecccccc
Confidence 466677999999999999999999999999999999999888777765543322 34568999999998853
Q ss_pred CC---h----h--------HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhh
Q 002241 386 DG---K----G--------AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALR 448 (948)
Q Consensus 386 ~~---~----~--------~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr 448 (948)
-. + + .+.-||..+.. +..++ .--|.||+|+|... +|+|-
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG--------lwSsc----------------g~ERIivFTTNh~EkLDPALl 356 (457)
T KOG0743|consen 301 LRERRKKKKENFEGDLSRVTLSGLLNFLDG--------LWSSC----------------GDERIIVFTTNHKEKLDPALL 356 (457)
T ss_pred cccccccccccccCCcceeehHHhhhhhcc--------ccccC----------------CCceEEEEecCChhhcCHhhc
Confidence 10 0 0 11223433321 11101 11377999999754 67775
Q ss_pred hhccceEEEEecCcCHHHHHHHHHHHhhhc
Q 002241 449 SLRQIAKVHVFIQPSVSRVVSRLKHICNNE 478 (948)
Q Consensus 449 ~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~E 478 (948)
...+....|++.-.+...+....+..+..+
T Consensus 357 RpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 357 RPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred CCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 555789999999999999888887776553
No 100
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=2.9e-12 Score=147.65 Aligned_cols=170 Identities=21% Similarity=0.213 Sum_probs=116.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhhh------------------cccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQMN------------------SVMA 368 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~~------------------sv~~ 368 (948)
..++|+||||+|||++++.+++++ ++.++++|+....+...+...|...+... .+..
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE 135 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987 68899999987766554444444333210 0011
Q ss_pred cCCCcEEEecCccccc-CCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch--
Q 002241 369 DSRPKCLVIDEIDGAL-GDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP-- 445 (948)
Q Consensus 369 ~~kp~iLIIDEID~l~-~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p-- 445 (948)
.+++.||||||+|.+. ..+...+..|+.++... ...+..+|+|+|+....
T Consensus 136 ~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~---------------------------~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 136 RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY---------------------------PGARIGVIGISSDLTFLYI 188 (394)
T ss_pred cCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc---------------------------CCCeEEEEEEECCcchhhh
Confidence 3456899999999986 22233444444433210 01135689999986432
Q ss_pred ---hhhhhccceEEEEecCcCHHHHHHHHHHHhhhc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 002241 446 ---ALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNE--SMKTSSIALTTLAEYT---ECDIRSCLNTLQFLD 509 (948)
Q Consensus 446 ---~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~E--gi~id~~~L~~L~e~s---~GDIR~aIn~LQ~~~ 509 (948)
.++.. .....|.|.+++.+++..+|...+... .-.++++++..|++.+ .||+|.+++.|..++
T Consensus 189 l~~~~~s~-~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 189 LDPRVKSV-FRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred cCHHHHhc-CCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 22221 124678999999999999998877542 2257899999998887 899999999886543
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.44 E-value=4e-13 Score=129.63 Aligned_cols=119 Identities=29% Similarity=0.405 Sum_probs=82.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCC--ChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC----
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDR--SSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG---- 387 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~r--s~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~---- 387 (948)
+||+||||||||++|+.+|+++|++++++++++.. ........+..++...... .+|+||+|||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~vl~iDe~d~l~~~~~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS--AKPCVLFIDEIDKLFPKSQPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT--STSEEEEEETGGGTSHHCSTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccccc--ccceeeeeccchhccccccccc
Confidence 69999999999999999999999999999998765 2344555666666543211 158999999999997543
Q ss_pred ----hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEEEec
Q 002241 388 ----KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHVFI 460 (948)
Q Consensus 388 ----~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~ 460 (948)
....+.|+..+..... ......+|++||+.. .+.+.. .++...|.|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~-------------------------~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSS-------------------------KNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTT-------------------------TSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccccccccceeeeccccccc-------------------------ccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 2334555555543211 023467999999853 444544 5666776664
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.43 E-value=1.4e-12 Score=151.24 Aligned_cols=164 Identities=20% Similarity=0.224 Sum_probs=114.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhhhc---c-cccCCCcEEEecCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQMNS---V-MADSRPKCLVIDEID 381 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~~s---v-~~~~kp~iLIIDEID 381 (948)
.+.++||||+|+|||+|++++|+++ +..++.+++.+... .+...+.... + .......+|||||||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~ 209 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN------DFVNALRNNKMEEFKEKYRSVDLLLIDDIQ 209 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH------HHHHHHHcCCHHHHHHHHHhCCEEEEehhh
Confidence 3679999999999999999999986 67889998765321 1111111000 0 001246799999999
Q ss_pred cccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC------chhhhhhccceE
Q 002241 382 GALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY------APALRSLRQIAK 455 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~------~p~Lr~Lr~~~~ 455 (948)
.+.+. ......|+.+++.-.. ..+++|++||... .+.+++....+.
T Consensus 210 ~l~~~-~~~~~~l~~~~n~~~~---------------------------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~ 261 (405)
T TIGR00362 210 FLAGK-ERTQEEFFHTFNALHE---------------------------NGKQIVLTSDRPPKELPGLEERLRSRFEWGL 261 (405)
T ss_pred hhcCC-HHHHHHHHHHHHHHHH---------------------------CCCCEEEecCCCHHHHhhhhhhhhhhccCCe
Confidence 87543 2345567777764221 1256888887532 122333223456
Q ss_pred EEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 456 VHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 456 iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
.+.|.+|+.+.+..+|+..+...++.++++++..|++...||+|.+...|..+
T Consensus 262 ~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l 314 (405)
T TIGR00362 262 VVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRL 314 (405)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999855544443
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.42 E-value=3.6e-12 Score=135.56 Aligned_cols=165 Identities=22% Similarity=0.266 Sum_probs=116.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhhhcc----cccCCCcEEEecCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQMNSV----MADSRPKCLVIDEID 381 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv----~~~~kp~iLIIDEID 381 (948)
.+.++||||+|+|||+|++++++++ +..|+.+++.+ +...+..++..... ..-....||+||+|+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~------f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~ 107 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE------FIREFADALRDGEIEEFKDRLRSADLLIIDDIQ 107 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH------HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGG
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH------HHHHHHHHHHcccchhhhhhhhcCCEEEEecch
Confidence 3579999999999999999999874 67888888743 33333333322111 012467899999999
Q ss_pred cccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC------CchhhhhhccceE
Q 002241 382 GALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL------YAPALRSLRQIAK 455 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl------~~p~Lr~Lr~~~~ 455 (948)
.+.+ .......|+.+++.-.. ...++|++|+.. ..+.|++....+.
T Consensus 108 ~l~~-~~~~q~~lf~l~n~~~~---------------------------~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl 159 (219)
T PF00308_consen 108 FLAG-KQRTQEELFHLFNRLIE---------------------------SGKQLILTSDRPPSELSGLLPDLRSRLSWGL 159 (219)
T ss_dssp GGTT-HHHHHHHHHHHHHHHHH---------------------------TTSEEEEEESS-TTTTTTS-HHHHHHHHCSE
T ss_pred hhcC-chHHHHHHHHHHHHHHh---------------------------hCCeEEEEeCCCCccccccChhhhhhHhhcc
Confidence 8754 34567788888875332 135688888643 2345555566888
Q ss_pred EEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 456 VHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 456 iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
++.+.+|+.+.+..+|+..+...|+.++++++..|++...+|+|.....|..+.
T Consensus 160 ~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 160 VVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLD 213 (219)
T ss_dssp EEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999777666553
No 104
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=3.1e-12 Score=149.20 Aligned_cols=165 Identities=17% Similarity=0.167 Sum_probs=120.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhc---cc-ccCCCcEEEecCcccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNS---VM-ADSRPKCLVIDEIDGA 383 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~s---v~-~~~kp~iLIIDEID~l 383 (948)
.+.++||||+|+|||+|++++|+++ |..++++++.+. ...+..++.... +. ......|||||||+.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f------~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l 214 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF------TEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVF 214 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH------HHHHHHHHhcchHHHHHHHcccCCEEEEcchhhh
Confidence 4689999999999999999999975 788888887432 222222221100 00 1246789999999987
Q ss_pred cCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc---hhhhhhccc---eEEE
Q 002241 384 LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---PALRSLRQI---AKVH 457 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---p~Lr~Lr~~---~~iI 457 (948)
.+. ....+.|+.+++.-.. ...+||++||.... .....|+++ +.++
T Consensus 215 ~~k-~~~qeelf~l~N~l~~---------------------------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~ 266 (445)
T PRK12422 215 SGK-GATQEEFFHTFNSLHT---------------------------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAI 266 (445)
T ss_pred cCC-hhhHHHHHHHHHHHHH---------------------------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEE
Confidence 543 3345667777664221 12568888876421 112334444 4789
Q ss_pred EecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 458 VFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
.+.+|+.+.+..+|+..|...|+.++++++..|+....+|+|..++.|+.++
T Consensus 267 ~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 267 PLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLA 318 (445)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999885
No 105
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=4.3e-12 Score=142.13 Aligned_cols=154 Identities=15% Similarity=0.174 Sum_probs=113.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--------CcceecCC--CCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY--------HVVEVNAS--DDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~--------~viEiNaS--d~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
+.+||+||+|+||||+|+.+|+.+-. ++.++... ..-+.+.+++.+..+ ..... .+..+|+|||++|
T Consensus 27 ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~-~~~p~--~~~~kv~iI~~ad 103 (313)
T PRK05564 27 HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEV-NKKPY--EGDKKVIIIYNSE 103 (313)
T ss_pred ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHH-hcCcc--cCCceEEEEechh
Confidence 68899999999999999999997632 34455442 222344555544332 23332 3578999999999
Q ss_pred cccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecC
Q 002241 382 GALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQ 461 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~ 461 (948)
.+. ..+.++|++.++... ....+|++|++.. ..+..++++|.++.|.+
T Consensus 104 ~m~---~~a~naLLK~LEepp----------------------------~~t~~il~~~~~~-~ll~TI~SRc~~~~~~~ 151 (313)
T PRK05564 104 KMT---EQAQNAFLKTIEEPP----------------------------KGVFIILLCENLE-QILDTIKSRCQIYKLNR 151 (313)
T ss_pred hcC---HHHHHHHHHHhcCCC----------------------------CCeEEEEEeCChH-hCcHHHHhhceeeeCCC
Confidence 984 468899999997532 1345888887754 45677899999999999
Q ss_pred cCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 002241 462 PSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNT 504 (948)
Q Consensus 462 p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~ 504 (948)
++.+++...|...+. .++.+.+..++..++|....++..
T Consensus 152 ~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 152 LSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred cCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999888875543 467888889999999988877644
No 106
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.8e-13 Score=145.68 Aligned_cols=174 Identities=22% Similarity=0.252 Sum_probs=118.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh-
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK- 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~- 388 (948)
|.+||+||||||||.||++||.|+|-.++.|.+|...++. .-+..++-.+.+.. .-.|.+|||||||.+.+.+.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemAR---fyAPStIFiDEIDslcs~RG~ 322 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMAR---FYAPSTIFIDEIDSLCSQRGG 322 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHH---HhCCceeehhhHHHHHhcCCC
Confidence 8999999999999999999999999999999999988764 44455666666655 34799999999999975321
Q ss_pred --------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCc-EEEEecCCCchhhhhhccceEEEEe
Q 002241 389 --------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRP-VICICNDLYAPALRSLRQIAKVHVF 459 (948)
Q Consensus 389 --------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rP-II~icNDl~~p~Lr~Lr~~~~iI~F 459 (948)
.+-..||-.+..- ....+ ..++- |..-+|-.++-.-.-+|++-..|.+
T Consensus 323 s~EHEaSRRvKsELLvQmDG~--------~~t~e---------------~~k~VmVLAATN~PWdiDEAlrRRlEKRIyI 379 (491)
T KOG0738|consen 323 SSEHEASRRVKSELLVQMDGV--------QGTLE---------------NSKVVMVLAATNFPWDIDEALRRRLEKRIYI 379 (491)
T ss_pred ccchhHHHHHHHHHHHHhhcc--------ccccc---------------cceeEEEEeccCCCcchHHHHHHHHhhheee
Confidence 1222344333311 10000 01112 2234565555443445667788899
Q ss_pred cCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHhcC
Q 002241 460 IQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----ECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 460 ~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~GDIR~aIn~LQ~~~~~~ 512 (948)
+.|+.+.....|+..+ .+-...++-.+..|++.+ +.||+.++....+...++
T Consensus 380 PLP~~~~R~~Li~~~l-~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 380 PLPDAEARSALIKILL-RSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred eCCCHHHHHHHHHHhh-ccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 9999988877665444 444444566677777764 559999999888887664
No 107
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.41 E-value=1e-12 Score=166.76 Aligned_cols=184 Identities=12% Similarity=0.079 Sum_probs=124.3
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH----------------------------------
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS---------------------------------- 351 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~---------------------------------- 351 (948)
.|...+|++||+||||||||.||++||.+++.+++.|.+++.....
T Consensus 1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 4556679999999999999999999999999999999887654211
Q ss_pred -------H----HHHHHHHHHhhhcccccCCCcEEEecCcccccCCChh--HHHHHHHHHHhhhccccccccccccCchh
Q 002241 352 -------T----IENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKG--AVEVILKMVSAERKSNTAKENVAKEDQPE 418 (948)
Q Consensus 352 -------~----~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~--~~~~Ll~li~~~~~~~~~~~~~~~~~~~~ 418 (948)
. -..+|+..+..+ ....||||+|||||.+...+.. .+..|+..+...... .
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelA---Rk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~--------~----- 1768 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELA---KAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER--------C----- 1768 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHH---HHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc--------C-----
Confidence 0 001133333333 2567999999999999764322 245555554321100 0
Q ss_pred hhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHH--HHHHHHHHc--
Q 002241 419 KISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSI--ALTTLAEYT-- 494 (948)
Q Consensus 419 k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~--~L~~L~e~s-- 494 (948)
..+.-.++++|+|| |..+|+|..-.++.+.|.++.|+..+..+++..++...|+.++.. .+..||..+
T Consensus 1769 --s~~~VIVIAATNRP------D~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1769 --STRNILVIASTHIP------QKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred --CCCCEEEEEeCCCc------ccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCC
Confidence 00001123444455 666888877778999999999999888888776555556655533 478888876
Q ss_pred --cCCHHHHHHHHHHHHhcCc
Q 002241 495 --ECDIRSCLNTLQFLDKKKE 513 (948)
Q Consensus 495 --~GDIR~aIn~LQ~~~~~~~ 513 (948)
+.||..++|.+-.++.+.+
T Consensus 1841 fSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1841 SNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred CCHHHHHHHHHHHHHHHHHcC
Confidence 5599999998887776543
No 108
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=6.3e-13 Score=142.41 Aligned_cols=176 Identities=22% Similarity=0.239 Sum_probs=122.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|...+++++||||||+|||.+|+++|..+|.+++-+.+|..-++. +-...|++.+.... .-.||||+|||||...
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~---~~~pciifmdeiDAig 238 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAR---EVIPCIIFMDEIDAIG 238 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHh---hhCceEEeehhhhhhc
Confidence 556679999999999999999999999999999999999776653 23344555555443 4568999999999875
Q ss_pred C--------CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 G--------DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~--------~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
+ +++..+..|+++++.-.. . ...-+.|+||++|+.. .|+|-.-.+..
T Consensus 239 GRr~se~Ts~dreiqrTLMeLlnqmdg-----f------------------d~l~rVk~ImatNrpdtLdpaLlRpGRld 295 (388)
T KOG0651|consen 239 GRRFSEGTSSDREIQRTLMELLNQMDG-----F------------------DTLHRVKTIMATNRPDTLDPALLRPGRLD 295 (388)
T ss_pred cEEeccccchhHHHHHHHHHHHHhhcc-----c------------------hhcccccEEEecCCccccchhhcCCcccc
Confidence 4 234556678888763211 0 1234589999999754 34443334567
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCC--CCCHHHHHHHHHHccC-CHHHHHHHHHHH
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESM--KTSSIALTTLAEYTEC-DIRSCLNTLQFL 508 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi--~id~~~L~~L~e~s~G-DIR~aIn~LQ~~ 508 (948)
+.+..+.|+....+.+++.....-.. .++.+++..+++..+| |+|.+....-++
T Consensus 296 rk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~F 352 (388)
T KOG0651|consen 296 RKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMF 352 (388)
T ss_pred ceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhccccccc
Confidence 77888888888777766544332111 4678888888887665 777766554433
No 109
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.40 E-value=3.9e-12 Score=158.31 Aligned_cols=181 Identities=19% Similarity=0.245 Sum_probs=116.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHH-----------HHHHHHHhhhcccccCCCcEEEecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIE-----------NKILDVVQMNSVMADSRPKCLVIDE 379 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~-----------~~I~~~~~~~sv~~~~kp~iLIIDE 379 (948)
.+++||+||||||||++|+++|++++..++.++.+.......+. ..+...+... .....||||||
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~----~~~~~villDE 422 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA----KTKNPLFLLDE 422 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh----CcCCCEEEEec
Confidence 35899999999999999999999999999999887654332221 1223332211 12334999999
Q ss_pred cccccCCCh-hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEE
Q 002241 380 IDGALGDGK-GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHV 458 (948)
Q Consensus 380 ID~l~~~~~-~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~ 458 (948)
||.+..+.. ...++|++++...+... +.-. .. +......+..+||+||.... .-.+|++++.+|.
T Consensus 423 idk~~~~~~~~~~~aLl~~ld~~~~~~-f~d~-----~~-------~~~~d~s~v~~I~TtN~~~~-i~~~L~~R~~vi~ 488 (775)
T TIGR00763 423 IDKIGSSFRGDPASALLEVLDPEQNNA-FSDH-----YL-------DVPFDLSKVIFIATANSIDT-IPRPLLDRMEVIE 488 (775)
T ss_pred hhhcCCccCCCHHHHHHHhcCHHhcCc-cccc-----cC-------CceeccCCEEEEEecCCchh-CCHHHhCCeeEEe
Confidence 999976432 23567888776432210 0000 00 00011235668899998652 2345677889999
Q ss_pred ecCcCHHHHHHHHHHHh----------hhcCCCCCHHHHHHHHHHcc--CCHHHHHHHHHHHH
Q 002241 459 FIQPSVSRVVSRLKHIC----------NNESMKTSSIALTTLAEYTE--CDIRSCLNTLQFLD 509 (948)
Q Consensus 459 F~~p~~~~l~~~L~~I~----------~~Egi~id~~~L~~L~e~s~--GDIR~aIn~LQ~~~ 509 (948)
|+.++.+++..+++..+ ..+++.++++++..|++... ..+|..-..++-++
T Consensus 489 ~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 489 LSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKIC 551 (775)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHH
Confidence 99999998888886543 22356789999999998532 34555444444444
No 110
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.5e-12 Score=151.37 Aligned_cols=185 Identities=23% Similarity=0.291 Sum_probs=133.7
Q ss_pred cccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCc
Q 002241 303 TRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEI 380 (948)
Q Consensus 303 ~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEI 380 (948)
+...+-+.+..+|||||||||||.||.++|..+++++|.+......++. .-++.+++.+..+. ..+|||||+||+
T Consensus 693 f~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~---~a~PCiLFFDEf 769 (952)
T KOG0735|consen 693 FANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQ---SAKPCILFFDEF 769 (952)
T ss_pred HhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhh---ccCCeEEEeccc
Confidence 4455667789999999999999999999999999999999887665542 33455566555433 568999999999
Q ss_pred ccccCC----ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEE
Q 002241 381 DGALGD----GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKV 456 (948)
Q Consensus 381 D~l~~~----~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~i 456 (948)
|.+.+. ..|..+..+..+......... . +.-...+.+.|| |+.+|+|-+-.++...
T Consensus 770 dSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg-l-------------~GV~i~aaTsRp------dliDpALLRpGRlD~~ 829 (952)
T KOG0735|consen 770 DSIAPKRGHDSTGVTDRVVNQLLTELDGAEG-L-------------DGVYILAATSRP------DLIDPALLRPGRLDKL 829 (952)
T ss_pred cccCcccCCCCCCchHHHHHHHHHhhccccc-c-------------ceEEEEEecCCc------cccCHhhcCCCcccee
Confidence 999753 234444444444332221000 0 000124677788 8888888666678888
Q ss_pred EEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Q 002241 457 HVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 457 I~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~GDIR~aIn~LQ~~~~~ 511 (948)
+.-+.|+..+++.+|+.+...-.+ -++.+++.|+..+ +.|+.+.+-+.|+.+..
T Consensus 830 v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh 887 (952)
T KOG0735|consen 830 VYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVH 887 (952)
T ss_pred eeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHHHHHHHHHHHH
Confidence 888999999999999988765444 3567788888875 45999999999998754
No 111
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.40 E-value=2.6e-12 Score=156.52 Aligned_cols=173 Identities=22% Similarity=0.215 Sum_probs=118.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~ 387 (948)
.++.+||+||||||||++|+++|+++|..++.+++++..... .....+...+... ....|+||||||||.+....
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a---~~~~P~IifIDEiD~l~~~r 260 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA---KKAAPCIIFIDEIDAVGRQR 260 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH---HhcCCcEEEehhHhhhhhcc
Confidence 346799999999999999999999999999999998754321 1122333333322 14578999999999985321
Q ss_pred h-----------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 388 K-----------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 388 ~-----------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
. ..++.|+..+.... .....-+|++||... ++++..-.++.
T Consensus 261 ~~~~~g~~~~~~~~ln~lL~~mdg~~--------------------------~~~~vivIaaTN~p~~lD~Al~RpgRfd 314 (644)
T PRK10733 261 GAGLGGGHDEREQTLNQMLVEMDGFE--------------------------GNEGIIVIAATNRPDVLDPALLRPGRFD 314 (644)
T ss_pred CCCCCCCchHHHHHHHHHHHhhhccc--------------------------CCCCeeEEEecCChhhcCHHHhCCcccc
Confidence 1 12222222221100 011245777888755 56665444688
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhcC
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDKKK 512 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~~~ 512 (948)
+.|.|..|+.+.+.++|+..+.+..+. .+..+..|++.+.| ||..+++.....+.+.
T Consensus 315 r~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 315 RQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred eEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999988775543 23346778888877 9999999998876653
No 112
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.1e-12 Score=153.44 Aligned_cols=174 Identities=25% Similarity=0.279 Sum_probs=121.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
+.+.++++||+||||||||+||+++|++++.+++.+..++..++ ...+..|+..+.... ...|+||||||||.+.
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~---~~~p~iiFiDEiDs~~ 348 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR---KLAPSIIFIDEIDSLA 348 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH---cCCCcEEEEEchhhhh
Confidence 45667899999999999999999999999999999999977764 456677777776554 5689999999999997
Q ss_pred CCCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 GDGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
.... ..++.|+..++.. .. ...+-+|..+|... ++++..-.++.
T Consensus 349 ~~r~~~~~~~~~r~~~~lL~~~d~~-------------------e~-------~~~v~vi~aTN~p~~ld~a~lR~gRfd 402 (494)
T COG0464 349 SGRGPSEDGSGRRVVGQLLTELDGI-------------------EK-------AEGVLVIAATNRPDDLDPALLRPGRFD 402 (494)
T ss_pred ccCCCCCchHHHHHHHHHHHHhcCC-------------------Cc-------cCceEEEecCCCccccCHhhcccCccc
Confidence 5422 1223333332210 00 11123556666544 34432223789
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHc----cCCHHHHHHHHHHHH
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMK-TSSIALTTLAEYT----ECDIRSCLNTLQFLD 509 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~-id~~~L~~L~e~s----~GDIR~aIn~LQ~~~ 509 (948)
..+.|+.|+......+++..+...+.. ..+-.+..|++.+ +.||...+...-+.+
T Consensus 403 ~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~ 462 (494)
T COG0464 403 RLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEA 462 (494)
T ss_pred eEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988866664 5567777777754 446666665544443
No 113
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.39 E-value=7.7e-12 Score=151.43 Aligned_cols=190 Identities=21% Similarity=0.208 Sum_probs=116.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCCC-hHHHHHH------------HHHHHhhhc---
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDRS-SSTIENK------------ILDVVQMNS--- 365 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~rs-~~~~~~~------------I~~~~~~~s--- 365 (948)
..++|+|||||||||+|+++++.. +..++++|+++... ...+... ....+....
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPE 255 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCc
Confidence 469999999999999999998765 34688999876532 1111100 000010000
Q ss_pred ----ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCc-hhhhhhccccccccCCCcEEEEe-
Q 002241 366 ----VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQ-PEKISKKKGCKKASLLRPVICIC- 439 (948)
Q Consensus 366 ----v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~-~~k~~~kk~~~~~~~~rPII~ic- 439 (948)
........+|||||++.+. ...+..|+.+++......... ....... ... --++ .........+|+|+
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld---~~~Q~~Ll~~Le~~~v~~~~~-~~~~~~~~~~~-~ik~-~~~~~~~~~~VLI~a 329 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELD---PLLQNKLLKVLEDKRVEFSSS-YYDPDDPNVPK-YIKK-LFEEGAPADFVLIGA 329 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCC---HHHHHHHHHHHhhCeEEeecc-eeccCCcccch-hhhh-hcccCccceEEEEEe
Confidence 0112235699999999884 356778888887543110000 0000000 000 0000 00011123355553
Q ss_pred --cCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 440 --NDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 440 --NDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
++.. ....+|+++|..+.|.+.+.+++..+++.++.+.++.++++++..|++.+. |.|.++|.|+.++
T Consensus 330 Tt~~~~-~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~ 399 (615)
T TIGR02903 330 TTRDPE-EINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVY 399 (615)
T ss_pred cccccc-ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 3332 233567788999999999999999999999999898899999999988764 8899999998764
No 114
>PRK09087 hypothetical protein; Validated
Probab=99.39 E-value=4.7e-12 Score=135.25 Aligned_cols=149 Identities=16% Similarity=0.205 Sum_probs=108.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
+.++|+||+|+|||||++++|+..+.. .+++.+ +...+.... ...+|+|||||.+.. . .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~------~~~~~~~~~---------~~~~l~iDDi~~~~~-~---~ 103 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNE------IGSDAANAA---------AEGPVLIEDIDAGGF-D---E 103 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHH------cchHHHHhh---------hcCeEEEECCCCCCC-C---H
Confidence 569999999999999999999986544 444421 111111111 125899999998732 2 3
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC------CCchhhhhhccceEEEEecCcCHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND------LYAPALRSLRQIAKVHVFIQPSVS 465 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND------l~~p~Lr~Lr~~~~iI~F~~p~~~ 465 (948)
..|+.+++.-.. ..+++|++|+. ...+.|++....+.++.+.+|+.+
T Consensus 104 ~~lf~l~n~~~~---------------------------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e 156 (226)
T PRK09087 104 TGLFHLINSVRQ---------------------------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDA 156 (226)
T ss_pred HHHHHHHHHHHh---------------------------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHH
Confidence 456777664221 12568888773 223455555556699999999999
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 466 RVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 466 ~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
.+..+|+..+...++.++++++..|++.+.||+|.++..|.-+
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765544
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=7.5e-12 Score=148.52 Aligned_cols=165 Identities=17% Similarity=0.205 Sum_probs=120.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
+.|+|||++|+|||+|+++||+++ |+.|+.+++.+.... ..+.....+.+.. ...+..+||||||+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~----~y~~~DLLlIDDIq~l~ 390 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR----RYREMDILLVDDIQFLE 390 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH----HhhcCCEEEEehhcccc
Confidence 469999999999999999999986 688999988653211 0011100001110 12357899999999875
Q ss_pred CCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC------CchhhhhhccceEEEE
Q 002241 385 GDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL------YAPALRSLRQIAKVHV 458 (948)
Q Consensus 385 ~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl------~~p~Lr~Lr~~~~iI~ 458 (948)
+. ......|+.+++.-.. .+.+||++||.. ..+.|++......++.
T Consensus 391 gk-e~tqeeLF~l~N~l~e---------------------------~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~ 442 (617)
T PRK14086 391 DK-ESTQEEFFHTFNTLHN---------------------------ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITD 442 (617)
T ss_pred CC-HHHHHHHHHHHHHHHh---------------------------cCCCEEEecCCChHhhhhccHHHHhhhhcCceEE
Confidence 43 3445677777775321 135688888753 3455666556788999
Q ss_pred ecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 459 FIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 459 F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
+..|+.+.+..+|+..+...++.++++++..|+....+|+|.+...|.-+
T Consensus 443 I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 443 VQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977666554
No 116
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=1.3e-11 Score=138.03 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=114.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC----------cceecCCCCC---------C----------------------h
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH----------VVEVNASDDR---------S----------------------S 350 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~----------viEiNaSd~r---------s----------------------~ 350 (948)
..+||+||+|+||+++|.++|+.+-.. +...|.+|.. + .
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~i 106 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRL 106 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcH
Confidence 689999999999999999999986321 1222332211 0 1
Q ss_pred HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhcccccccc
Q 002241 351 STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKAS 430 (948)
Q Consensus 351 ~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~ 430 (948)
+.++ .|...+...+. .+..+|+|||++|.+. ..+.++|+++++...
T Consensus 107 d~ir-~i~~~l~~~p~--~~~~kVvII~~ae~m~---~~aaNaLLK~LEEPp---------------------------- 152 (314)
T PRK07399 107 EQIR-EIKRFLSRPPL--EAPRKVVVIEDAETMN---EAAANALLKTLEEPG---------------------------- 152 (314)
T ss_pred HHHH-HHHHHHccCcc--cCCceEEEEEchhhcC---HHHHHHHHHHHhCCC----------------------------
Confidence 1222 23333433333 3578999999999994 478899999997521
Q ss_pred CCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 431 LLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 431 ~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
+.-+|++|++.. ..+..++++|..+.|.+++.+++.++|...+..++.. ..+..|+..++||.|.+++.++.+
T Consensus 153 -~~~fILi~~~~~-~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 153 -NGTLILIAPSPE-SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred -CCeEEEEECChH-hCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234889998764 4667789999999999999999999999887655443 235788889999999999988754
No 117
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=5.2e-12 Score=147.49 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=113.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhhhcc---c--ccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQMNSV---M--ADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv---~--~~~kp~iLIIDEID 381 (948)
+.++||||+|+|||+|++++|+++ +..++++++.+. ...+...+..... . ....+.+|||||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f------~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF------LNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH------HHHHHHHHhcccHHHHHHHHHhcCCEEEEechh
Confidence 579999999999999999999985 567888887542 2222222211100 0 01257899999999
Q ss_pred cccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc---hhhhhhcc---ceE
Q 002241 382 GALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---PALRSLRQ---IAK 455 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---p~Lr~Lr~---~~~ 455 (948)
.+.+. .+....|+.+++.-.. ...+||++|+.... .....+++ .+.
T Consensus 205 ~l~~~-~~~q~elf~~~n~l~~---------------------------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl 256 (440)
T PRK14088 205 FLIGK-TGVQTELFHTFNELHD---------------------------SGKQIVICSDREPQKLSEFQDRLVSRFQMGL 256 (440)
T ss_pred hhcCc-HHHHHHHHHHHHHHHH---------------------------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCc
Confidence 87543 2344566666654221 12457777763211 11233443 455
Q ss_pred EEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 456 VHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 456 iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
++.|.+|+.+.+..+|+..+..+++.++++++..|++.+.||+|.+...|.-+
T Consensus 257 ~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l 309 (440)
T PRK14088 257 VAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_pred eEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999876666544
No 118
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.36 E-value=6.6e-12 Score=155.77 Aligned_cols=163 Identities=26% Similarity=0.320 Sum_probs=110.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
...++++||+||||||||++|+++|++++..++.+++++..+. ......+...++... ...|+||||||||.+..
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~---~~~p~il~iDEid~l~~ 285 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAE---ENAPSIIFIDEIDAIAP 285 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHH---hcCCcEEEeehhhhhcc
Confidence 3445889999999999999999999999999999998765432 123344555554332 35689999999999865
Q ss_pred CCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceE
Q 002241 386 DGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAK 455 (948)
Q Consensus 386 ~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~ 455 (948)
... ..+..|+.++.... ......+|++||... ++.++...++..
T Consensus 286 ~r~~~~~~~~~~~~~~Ll~~ld~l~--------------------------~~~~vivI~atn~~~~ld~al~r~gRfd~ 339 (733)
T TIGR01243 286 KREEVTGEVEKRVVAQLLTLMDGLK--------------------------GRGRVIVIGATNRPDALDPALRRPGRFDR 339 (733)
T ss_pred cccCCcchHHHHHHHHHHHHhhccc--------------------------cCCCEEEEeecCChhhcCHHHhCchhccE
Confidence 321 23344555543210 011234566777643 456655556788
Q ss_pred EEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHH
Q 002241 456 VHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRS 500 (948)
Q Consensus 456 iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~ 500 (948)
.+.|..|+.++...+|+..+....+ .++..+..|++.+.|-...
T Consensus 340 ~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 340 EIVIRVPDKRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCCCHH
Confidence 9999999999999999976654333 1345688888887764333
No 119
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.5e-12 Score=133.32 Aligned_cols=164 Identities=20% Similarity=0.267 Sum_probs=114.7
Q ss_pred ccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC--hHHHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 304 RSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS--SSTIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 304 ~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs--~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
...|...+|.+|+|||||+|||.+|++||.+.+..++-+-+..... .......+++++.... ...|.||||||+|
T Consensus 198 ~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAK---EkaP~IIFIDElD 274 (424)
T KOG0652|consen 198 ENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAK---EKAPTIIFIDELD 274 (424)
T ss_pred HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhh---ccCCeEEEEechh
Confidence 3456777899999999999999999999999888887776654321 1122344566665543 6789999999999
Q ss_pred cccC--------CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec--CCCchhhhhhc
Q 002241 382 GALG--------DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN--DLYAPALRSLR 451 (948)
Q Consensus 382 ~l~~--------~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN--Dl~~p~Lr~Lr 451 (948)
.+.. +++..++..+++++.-.. ... ....-+|..+| |+.+|+|-.-.
T Consensus 275 AIGtKRfDSek~GDREVQRTMLELLNQLDG-----Fss------------------~~~vKviAATNRvDiLDPALlRSG 331 (424)
T KOG0652|consen 275 AIGTKRFDSEKAGDREVQRTMLELLNQLDG-----FSS------------------DDRVKVIAATNRVDILDPALLRSG 331 (424)
T ss_pred hhccccccccccccHHHHHHHHHHHHhhcC-----CCC------------------ccceEEEeecccccccCHHHhhcc
Confidence 8843 234566777888764211 100 11123555566 56688886666
Q ss_pred cceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc
Q 002241 452 QIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT 494 (948)
Q Consensus 452 ~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s 494 (948)
+..+.|.|+.|+.+....+|+-..++.++. ++-..+.|+..+
T Consensus 332 RLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsT 373 (424)
T KOG0652|consen 332 RLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARST 373 (424)
T ss_pred cccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcc
Confidence 789999999999999999999888876653 334456666654
No 120
>CHL00181 cbbX CbbX; Provisional
Probab=99.33 E-value=1.6e-11 Score=135.72 Aligned_cols=164 Identities=24% Similarity=0.255 Sum_probs=109.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CC----CcceecCCCCCChHHH--HHHHHHHHhhhcccccCCCcEEEecCccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GY----HVVEVNASDDRSSSTI--ENKILDVVQMNSVMADSRPKCLVIDEIDG 382 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~----~viEiNaSd~rs~~~~--~~~I~~~~~~~sv~~~~kp~iLIIDEID~ 382 (948)
.++||+|||||||||+|+++|+.+ |+ .+++++.++..+.... ...+...+. ...+.||||||+|.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~------~a~ggVLfIDE~~~ 133 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLK------KAMGGVLFIDEAYY 133 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHH------HccCCEEEEEccch
Confidence 579999999999999999999975 33 4788886653321110 111222222 22457999999998
Q ss_pred ccCC------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC-------chhhhh
Q 002241 383 ALGD------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY-------APALRS 449 (948)
Q Consensus 383 l~~~------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~-------~p~Lr~ 449 (948)
+... +...+..|+.+++... ...-||++++... .|.+
T Consensus 134 l~~~~~~~~~~~e~~~~L~~~me~~~----------------------------~~~~vI~ag~~~~~~~~~~~np~L-- 183 (287)
T CHL00181 134 LYKPDNERDYGSEAIEILLQVMENQR----------------------------DDLVVIFAGYKDRMDKFYESNPGL-- 183 (287)
T ss_pred hccCCCccchHHHHHHHHHHHHhcCC----------------------------CCEEEEEeCCcHHHHHHHhcCHHH--
Confidence 7432 2345566666664211 1122444443211 1333
Q ss_pred hccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH--------ccCCHHHHHHHHHHHHhc
Q 002241 450 LRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY--------TECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 450 Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~--------s~GDIR~aIn~LQ~~~~~ 511 (948)
.+++..+|.|++++.+++.+++..++.+++..++++.+..+++. .-|+.|.+.|.++.+..+
T Consensus 184 ~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 184 SSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 23467799999999999999999999999999999888777764 237788888888877544
No 121
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=2.1e-11 Score=142.61 Aligned_cols=164 Identities=15% Similarity=0.185 Sum_probs=118.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhh-----hcc-cccCCCcEEEecCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQM-----NSV-MADSRPKCLVIDEI 380 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~-----~sv-~~~~kp~iLIIDEI 380 (948)
+.++||||+|+|||+|++++++++ ++.|+.+++.+.. ..+...+.. ..+ .......+||||||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~------~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDi 215 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA------RKAVDILQKTHKEIEQFKNEICQNDVLIIDDV 215 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH------HHHHHHHHHhhhHHHHHHHHhccCCEEEEecc
Confidence 579999999999999999999954 5788888885432 222222111 000 01245789999999
Q ss_pred ccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC------chhhhhhccce
Q 002241 381 DGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY------APALRSLRQIA 454 (948)
Q Consensus 381 D~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~------~p~Lr~Lr~~~ 454 (948)
+.+.+ .....+.|+.+++.... ...+||++||... .+.|+..-..+
T Consensus 216 q~l~~-k~~~~e~lf~l~N~~~~---------------------------~~k~iIltsd~~P~~l~~l~~rL~SR~~~G 267 (450)
T PRK14087 216 QFLSY-KEKTNEIFFTIFNNFIE---------------------------NDKQLFFSSDKSPELLNGFDNRLITRFNMG 267 (450)
T ss_pred ccccC-CHHHHHHHHHHHHHHHH---------------------------cCCcEEEECCCCHHHHhhccHHHHHHHhCC
Confidence 97754 23456777777775322 1235888877532 23333333357
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESM--KTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi--~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
.++.+.+|+.+.+..+|+..+...|+ .++++++..|++.+.||+|.+++.|.-+.
T Consensus 268 l~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 268 LSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred ceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 78899999999999999999998886 69999999999999999999998887553
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.33 E-value=8e-12 Score=154.73 Aligned_cols=166 Identities=23% Similarity=0.248 Sum_probs=113.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCCC----hHHHHHHHHHHHhhhcccccCCCcEEEe
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDRS----SSTIENKILDVVQMNSVMADSRPKCLVI 377 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~rs----~~~~~~~I~~~~~~~sv~~~~kp~iLII 377 (948)
+.+||+||||||||++|+.+|+.+ ++.+++++.+.... .+.++.++...+.... ...+.||||
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~---~~~~~ILfi 280 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIE---KEPNAILFI 280 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHh---ccCCeEEEE
Confidence 468999999999999999999987 78899988765432 2456677777765432 235789999
Q ss_pred cCcccccCCCh---h---HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC-CCch---hh
Q 002241 378 DEIDGALGDGK---G---AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND-LYAP---AL 447 (948)
Q Consensus 378 DEID~l~~~~~---~---~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND-l~~p---~L 447 (948)
||||.+.+.+. + ..+.|...+.. -..-+|..||. -|.+ .-
T Consensus 281 DEih~l~~~g~~~~~~~~~~~~L~~~l~~------------------------------g~i~~IgaTt~~e~~~~~~~d 330 (731)
T TIGR02639 281 DEIHTIVGAGATSGGSMDASNLLKPALSS------------------------------GKLRCIGSTTYEEYKNHFEKD 330 (731)
T ss_pred ecHHHHhccCCCCCccHHHHHHHHHHHhC------------------------------CCeEEEEecCHHHHHHHhhhh
Confidence 99999875321 1 22333322211 01225666664 1111 12
Q ss_pred hhhccceEEEEecCcCHHHHHHHHHHHhhh----cCCCCCHHHHHHHHHHccC---C---HHHHHHHHHHHHh
Q 002241 448 RSLRQIAKVHVFIQPSVSRVVSRLKHICNN----ESMKTSSIALTTLAEYTEC---D---IRSCLNTLQFLDK 510 (948)
Q Consensus 448 r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~----Egi~id~~~L~~L~e~s~G---D---IR~aIn~LQ~~~~ 510 (948)
..+++++..|.|..|+.+++.++|+.+... .++.++++++..+++.+.. | -+.+|..|.-++.
T Consensus 331 ~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a 403 (731)
T TIGR02639 331 RALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGA 403 (731)
T ss_pred HHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhh
Confidence 334556678999999999999999977654 4678999999999998754 3 4567777765543
No 123
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.8e-12 Score=144.52 Aligned_cols=173 Identities=23% Similarity=0.268 Sum_probs=126.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
++..+.+||.||||+|||.|+++||-|.+..++.|.||..-++. ..+..|+..++.+. ..+|.||+|||||.++.
T Consensus 183 r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr---~~qPsvifidEidslls 259 (428)
T KOG0740|consen 183 REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVAR---SLQPSVIFIDEIDSLLS 259 (428)
T ss_pred ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHH---hcCCeEEEechhHHHHh
Confidence 34558999999999999999999999999999999999988764 34455666665443 67899999999999975
Q ss_pred CCh-----h----HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEE
Q 002241 386 DGK-----G----AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKV 456 (948)
Q Consensus 386 ~~~-----~----~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~i 456 (948)
... . -.+.|+.+.- .+. + ...+.-+|+++|-.+.-.-.-+|++...
T Consensus 260 ~Rs~~e~e~srr~ktefLiq~~~---------~~s----------~------~~drvlvigaTN~P~e~Dea~~Rrf~kr 314 (428)
T KOG0740|consen 260 KRSDNEHESSRRLKTEFLLQFDG---------KNS----------A------PDDRVLVIGATNRPWELDEAARRRFVKR 314 (428)
T ss_pred hcCCcccccchhhhhHHHhhhcc---------ccC----------C------CCCeEEEEecCCCchHHHHHHHHHhhce
Confidence 321 1 1122222221 110 0 1113445666666665455556678888
Q ss_pred EEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH----ccCCHHHHHHHHHHH
Q 002241 457 HVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY----TECDIRSCLNTLQFL 508 (948)
Q Consensus 457 I~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~----s~GDIR~aIn~LQ~~ 508 (948)
+.++.|+.+....++..++...+..+.+..+..|++. +++||.+++...++-
T Consensus 315 ~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~ 370 (428)
T KOG0740|consen 315 LYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMG 370 (428)
T ss_pred eeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcC
Confidence 8999999999999999998888778888999999986 467999988776654
No 124
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.1e-12 Score=146.80 Aligned_cols=230 Identities=20% Similarity=0.263 Sum_probs=146.4
Q ss_pred CCCcccccccccccchhhhh--cccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHH
Q 002241 281 NSNNLEYENSNSKGIQDSWH--KKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENK 356 (948)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~--~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~ 356 (948)
|..+.+....+..++.++.. .++...|...++.+||.||||||||.||+++|-+++.+++.+..|+.... ..-..+
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsR 230 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASR 230 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHH
Confidence 33333333334444555443 45667788889999999999999999999999999999999999985321 111223
Q ss_pred HHHHHhhhcccccCCCcEEEecCcccccCCC-------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccc
Q 002241 357 ILDVVQMNSVMADSRPKCLVIDEIDGALGDG-------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKA 429 (948)
Q Consensus 357 I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~-------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~ 429 (948)
+++.+.... ...||||+|||||.+...+ ....+..+..+..... +.. . +.--..++
T Consensus 231 VRdLF~qAk---k~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD----GF~--~--------~~gvivia 293 (596)
T COG0465 231 VRDLFEQAK---KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD----GFG--G--------NEGVIVIA 293 (596)
T ss_pred HHHHHHHhh---ccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc----cCC--C--------CCceEEEe
Confidence 333333222 4568999999999874322 1122223333322221 000 0 00001234
Q ss_pred cCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH----ccCCHHHHHHHH
Q 002241 430 SLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY----TECDIRSCLNTL 505 (948)
Q Consensus 430 ~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~----s~GDIR~aIn~L 505 (948)
.++|| |+.+++|.+..++.+.|.+..|+...+.++|+..+++-.+. .+-.+..|+.. ++.|+-..+|..
T Consensus 294 aTNRp------dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 294 ATNRP------DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEA 366 (596)
T ss_pred cCCCc------ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHH
Confidence 55555 67788887777899999999999999999999777665554 23334456765 466999999988
Q ss_pred HHHHhcCccccccccccceeccccccccHHHHHHHHHhcch
Q 002241 506 QFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRK 546 (948)
Q Consensus 506 Q~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~ 546 (948)
-.++.+..... +... .+-++.++|+..+.
T Consensus 367 al~aar~n~~~--------i~~~----~i~ea~drv~~G~e 395 (596)
T COG0465 367 ALLAARRNKKE--------ITMR----DIEEAIDRVIAGPE 395 (596)
T ss_pred HHHHHHhcCee--------Eecc----chHHHHHHHhcCcC
Confidence 87776543221 1112 45678888888763
No 125
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.3e-12 Score=134.34 Aligned_cols=164 Identities=22% Similarity=0.238 Sum_probs=105.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
-+.+||+|||||||+-||+++|.+++-.++.+..||..++. .-+..+.+.+.+.. ..+|.||||||||.+.+.+.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemAR---e~kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAR---ENKPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHH---hcCCcEEEeehhhhhccCCC
Confidence 48999999999999999999999999999999999998874 45566777777765 68999999999998876432
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHH
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSR 466 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~ 466 (948)
+.-..-...|.....-...++. ..+ ...-++..+|-.+ +.++ .|++...|.++.|....
T Consensus 243 enEseasRRIKTEfLVQMqGVG--~d~---------------~gvLVLgATNiPw~LDsAI--RRRFekRIYIPLPe~~A 303 (439)
T KOG0739|consen 243 ENESEASRRIKTEFLVQMQGVG--NDN---------------DGVLVLGATNIPWVLDSAI--RRRFEKRIYIPLPEAHA 303 (439)
T ss_pred CCchHHHHHHHHHHHHhhhccc--cCC---------------CceEEEecCCCchhHHHHH--HHHhhcceeccCCcHHH
Confidence 1111111111111000000010 000 0112333344444 2333 35677888888888877
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHccC
Q 002241 467 VVSRLKHICNNESMKTSSIALTTLAEYTEC 496 (948)
Q Consensus 467 l~~~L~~I~~~Egi~id~~~L~~L~e~s~G 496 (948)
.....+..+-.-...+....+..|+..++|
T Consensus 304 R~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 304 RARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred hhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 766665555555556777888888877554
No 126
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.31 E-value=1.8e-11 Score=135.13 Aligned_cols=164 Identities=23% Similarity=0.272 Sum_probs=111.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CC----CcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GY----HVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDG 382 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~----~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~ 382 (948)
.++||+|||||||||+|+++|+.+ |+ .++++++++..+.. .....+...+. ...+.+||||||+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~------~a~~gvL~iDEi~~ 132 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILK------RAMGGVLFIDEAYY 132 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHH------HccCcEEEEechhh
Confidence 579999999999999999999875 33 58888876543211 00112233332 22458999999998
Q ss_pred ccCC------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC----C---chhhhh
Q 002241 383 ALGD------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL----Y---APALRS 449 (948)
Q Consensus 383 l~~~------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl----~---~p~Lr~ 449 (948)
+... +...++.|+.+++... ...-||++++.. + .|.++
T Consensus 133 L~~~~~~~~~~~~~~~~Ll~~le~~~----------------------------~~~~vI~a~~~~~~~~~~~~np~L~- 183 (284)
T TIGR02880 133 LYRPDNERDYGQEAIEILLQVMENQR----------------------------DDLVVILAGYKDRMDSFFESNPGFS- 183 (284)
T ss_pred hccCCCccchHHHHHHHHHHHHhcCC----------------------------CCEEEEEeCCcHHHHHHHhhCHHHH-
Confidence 7422 1334566777665311 112244443311 1 22222
Q ss_pred hccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH--------ccCCHHHHHHHHHHHHhc
Q 002241 450 LRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY--------TECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 450 Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~--------s~GDIR~aIn~LQ~~~~~ 511 (948)
+++...|+|++++.+++..++..++.+.+..++++++..+.++ .-|++|.+.|.++.+...
T Consensus 184 -sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 184 -SRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred -hhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 2356789999999999999999999999999999999888776 248999999999888654
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.28 E-value=3.1e-11 Score=150.86 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=110.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCC----ChHHHHHHHHHHHhhhcccccCCCcEEEe
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDR----SSSTIENKILDVVQMNSVMADSRPKCLVI 377 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~r----s~~~~~~~I~~~~~~~sv~~~~kp~iLII 377 (948)
..+||+|||||||||+|+.+|+.+ +++++.++.+... ....++..+...+.... ....+.||||
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~--~~~~~~ILfI 286 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVK--ASPQPIILFI 286 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHH--hcCCCeEEEE
Confidence 468999999999999999999976 3556666655432 34566677777665432 1246789999
Q ss_pred cCcccccCCC--hhHH---HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC-CCch---hhh
Q 002241 378 DEIDGALGDG--KGAV---EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND-LYAP---ALR 448 (948)
Q Consensus 378 DEID~l~~~~--~~~~---~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND-l~~p---~Lr 448 (948)
|||+.+.+.+ .+.. +.|...+..+ ...+|..|+. -|.+ .-.
T Consensus 287 DEih~l~~~g~~~~~~d~~n~Lkp~l~~G------------------------------~l~~IgaTT~~e~~~~~~~d~ 336 (852)
T TIGR03345 287 DEAHTLIGAGGQAGQGDAANLLKPALARG------------------------------ELRTIAATTWAEYKKYFEKDP 336 (852)
T ss_pred eChHHhccCCCccccccHHHHhhHHhhCC------------------------------CeEEEEecCHHHHhhhhhccH
Confidence 9999997532 1222 2233322210 1235555553 1211 123
Q ss_pred hhccceEEEEecCcCHHHHHHHHHHHhhh----cCCCCCHHHHHHHHHHccCCH------HHHHHHHHHHHh
Q 002241 449 SLRQIAKVHVFIQPSVSRVVSRLKHICNN----ESMKTSSIALTTLAEYTECDI------RSCLNTLQFLDK 510 (948)
Q Consensus 449 ~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~----Egi~id~~~L~~L~e~s~GDI------R~aIn~LQ~~~~ 510 (948)
.|++++.+|.|..|+.++...+|+.+... .++.++++++..+++.+.+-| .+||..|.-+|.
T Consensus 337 AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a 408 (852)
T TIGR03345 337 ALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA 408 (852)
T ss_pred HHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence 35557789999999999999998766643 468899999999999886543 347777766554
No 128
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.7e-11 Score=138.67 Aligned_cols=273 Identities=17% Similarity=0.205 Sum_probs=176.9
Q ss_pred HHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCCCccC------CCcccccccccc
Q 002241 220 EVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGNFRN------SNNLEYENSNSK 293 (948)
Q Consensus 220 ~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~~~~~------~~~~~~~~~~~~ 293 (948)
++...-+.-+...++.+++......+.+|++.++.+....- -++|....-.-+|....-.. ...+|.+...++
T Consensus 251 e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~V-iRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLe 329 (782)
T COG0466 251 EVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATV-IRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLE 329 (782)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHH-HHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCch
Confidence 33333333345667888888777888888887765543322 23555555567776542221 233455555565
Q ss_pred cchhhhhcc---cccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHH-----------H
Q 002241 294 GIQDSWHKK---TRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL-----------D 359 (948)
Q Consensus 294 ~~~~~~~~~---~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~-----------~ 359 (948)
++.+..-+- ....+.-...+|+|.||||+|||+|++.||+.+|-.++.+.-.-.|.-..++..-+ .
T Consensus 330 kVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ 409 (782)
T COG0466 330 KVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQ 409 (782)
T ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHH
Confidence 554443211 11122233479999999999999999999999999999999988777666654322 2
Q ss_pred HHhhhcccccCCCcEEEecCcccccCCChh-HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEE
Q 002241 360 VVQMNSVMADSRPKCLVIDEIDGALGDGKG-AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICI 438 (948)
Q Consensus 360 ~~~~~sv~~~~kp~iLIIDEID~l~~~~~~-~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~i 438 (948)
.+... .....+++|||||.+..+-+| -..+||+.+.-.+.+ .+.-+.-+ .....++.-+|||
T Consensus 410 ~mkka----~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~-~F~DhYLe------------v~yDLS~VmFiaT 472 (782)
T COG0466 410 GMKKA----GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNN-TFSDHYLE------------VPYDLSKVMFIAT 472 (782)
T ss_pred HHHHh----CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcC-chhhcccc------------CccchhheEEEee
Confidence 22211 234568999999999765332 345788888654432 11111100 0123566789999
Q ss_pred ecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHh-----hhcC-----CCCCHHHHHHHHHHc--cCCHHHHHHHHH
Q 002241 439 CNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHIC-----NNES-----MKTSSIALTTLAEYT--ECDIRSCLNTLQ 506 (948)
Q Consensus 439 cNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~-----~~Eg-----i~id~~~L~~L~e~s--~GDIR~aIn~LQ 506 (948)
+|.+.. .-+||+.+-++|.+.-++.++-+.+.+..+ +..| +.+++++|..|++.. +.-+|+.=..+.
T Consensus 473 ANsl~t-IP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ 551 (782)
T COG0466 473 ANSLDT-IPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIA 551 (782)
T ss_pred cCcccc-CChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHH
Confidence 998874 457899999999999999998888766543 3333 578899999999864 345788777777
Q ss_pred HHHhc
Q 002241 507 FLDKK 511 (948)
Q Consensus 507 ~~~~~ 511 (948)
-+|++
T Consensus 552 ki~RK 556 (782)
T COG0466 552 KICRK 556 (782)
T ss_pred HHHHH
Confidence 77764
No 129
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.5e-12 Score=135.27 Aligned_cols=202 Identities=19% Similarity=0.217 Sum_probs=132.4
Q ss_pred cCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccc
Q 002241 305 STGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDG 382 (948)
Q Consensus 305 ~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~ 382 (948)
..|...+|.++|||+||||||.||+++|++....++.+-.|+.-.+. ..-..+++.++... ...|.|+||||||.
T Consensus 213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~---e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE---EHAPSIVFIDEIDA 289 (440)
T ss_pred HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHH---hcCCceEEeehhhh
Confidence 35777789999999999999999999999999999988887643221 11123444444332 56799999999998
Q ss_pred ccC--------CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhcc
Q 002241 383 ALG--------DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQ 452 (948)
Q Consensus 383 l~~--------~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~ 452 (948)
+-. +.+..++.++++++.-.. +. + .-..-||+.+|.+. +|+|-.-.+
T Consensus 290 iGtKRyds~SggerEiQrtmLELLNQldG-----Fd-----------s-------rgDvKvimATnrie~LDPaLiRPGr 346 (440)
T KOG0726|consen 290 IGTKRYDSNSGGEREIQRTMLELLNQLDG-----FD-----------S-------RGDVKVIMATNRIETLDPALIRPGR 346 (440)
T ss_pred hccccccCCCccHHHHHHHHHHHHHhccC-----cc-----------c-------cCCeEEEEecccccccCHhhcCCCc
Confidence 843 123456677888774211 10 0 11245888888654 677755667
Q ss_pred ceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHH----HccCCHHHHHHHHHHHHhcCccccccccccceeccc
Q 002241 453 IAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAE----YTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRK 528 (948)
Q Consensus 453 ~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e----~s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~k 528 (948)
+.+.|.|+.|+......++.-...+..+. .+-.++.++- .++.||.+.+...-+++.+.... .++..
T Consensus 347 IDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm--------~vt~~ 417 (440)
T KOG0726|consen 347 IDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM--------KVTME 417 (440)
T ss_pred cccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh--------hccHH
Confidence 99999999999988777765433332221 1122344433 47889999999888888764432 13333
Q ss_pred cccccHHHHHHHHHhcc
Q 002241 529 DMSRSAFDIWKEIFQKR 545 (948)
Q Consensus 529 D~~~~lf~i~~~If~~~ 545 (948)
| ...+...||+.+
T Consensus 418 D----F~ka~e~V~~~K 430 (440)
T KOG0726|consen 418 D----FKKAKEKVLYKK 430 (440)
T ss_pred H----HHHHHHHHHHhc
Confidence 3 344556677655
No 130
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=8e-11 Score=132.33 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=114.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcceecCC---CCCChHHHHHHHHHHHhh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY------------------------HVVEVNAS---DDRSSSTIENKILDVVQM 363 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~------------------------~viEiNaS---d~rs~~~~~~~I~~~~~~ 363 (948)
...+||+||+|+|||++|+.+|+.+.+ +++.+... ...+.+.+++.+..+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~- 100 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ- 100 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh-
Confidence 468999999999999999999998754 23444322 23445666664433332
Q ss_pred hcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC
Q 002241 364 NSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY 443 (948)
Q Consensus 364 ~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~ 443 (948)
... .+..+|+||||+|.+.. .+.++|++.++.... +..+|++|++..
T Consensus 101 ~~~--~~~~kv~iI~~a~~m~~---~aaNaLLK~LEEPp~----------------------------~~~fiL~t~~~~ 147 (328)
T PRK05707 101 TAQ--LGGRKVVLIEPAEAMNR---NAANALLKSLEEPSG----------------------------DTVLLLISHQPS 147 (328)
T ss_pred ccc--cCCCeEEEECChhhCCH---HHHHHHHHHHhCCCC----------------------------CeEEEEEECChh
Confidence 222 45788999999999954 788999999985321 355888998876
Q ss_pred chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 002241 444 APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTL 505 (948)
Q Consensus 444 ~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~L 505 (948)
. .+..++++|..+.|.+|+.+++...|...+. ..+++.+..++..++|.+..|+..+
T Consensus 148 ~-ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 148 R-LLPTIKSRCQQQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred h-CcHHHHhhceeeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHH
Confidence 5 5677899999999999999999988875431 2456667777888999998887543
No 131
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.1e-10 Score=136.53 Aligned_cols=271 Identities=17% Similarity=0.224 Sum_probs=169.2
Q ss_pred HHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCCCccC------CCccccccccccc
Q 002241 221 VLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGNFRN------SNNLEYENSNSKG 294 (948)
Q Consensus 221 ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~~~~~------~~~~~~~~~~~~~ 294 (948)
+-...+.-+...++..+.....+.+++|+........-.. ..+|......-+|....... ...++.+....++
T Consensus 340 ~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnv-trNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~d 418 (906)
T KOG2004|consen 340 VEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNV-TRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMED 418 (906)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhH-HHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHH
Confidence 4444444444667777776677777777654332111111 23555555677887653221 1223444444444
Q ss_pred chhhhhcc---cccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHH-----------HHHHH
Q 002241 295 IQDSWHKK---TRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIEN-----------KILDV 360 (948)
Q Consensus 295 ~~~~~~~~---~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~-----------~I~~~ 360 (948)
+.+..-+- ....|.-..++|.|+||||+|||++++.||+.+|-.++.+.-........++. +|.++
T Consensus 419 VKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~ 498 (906)
T KOG2004|consen 419 VKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQC 498 (906)
T ss_pred HHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHH
Confidence 43332211 33456667899999999999999999999999999999888765554444443 34444
Q ss_pred HhhhcccccCCCcEEEecCcccccCCChh-HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEe
Q 002241 361 VQMNSVMADSRPKCLVIDEIDGALGDGKG-AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICIC 439 (948)
Q Consensus 361 ~~~~sv~~~~kp~iLIIDEID~l~~~~~~-~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ic 439 (948)
+.... ....+++|||||.+..+-+| -..+|++++.-.+.+. +.-..- ......++.-+|||+
T Consensus 499 LK~v~----t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNan-FlDHYL------------dVp~DLSkVLFicTA 561 (906)
T KOG2004|consen 499 LKKVK----TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNAN-FLDHYL------------DVPVDLSKVLFICTA 561 (906)
T ss_pred HHhhC----CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccc-hhhhcc------------ccccchhheEEEEec
Confidence 43322 23458999999998643222 2457888887554321 111000 001234567789999
Q ss_pred cCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHh-----h-----hcCCCCCHHHHHHHHHHc--cCCHHHHHHHHHH
Q 002241 440 NDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHIC-----N-----NESMKTSSIALTTLAEYT--ECDIRSCLNTLQF 507 (948)
Q Consensus 440 NDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~-----~-----~Egi~id~~~L~~L~e~s--~GDIR~aIn~LQ~ 507 (948)
|.... .-.||+.+-++|.+.-+..++-+++.+..+ . .+.++++++++..|++.. +.-+|+.-..++-
T Consensus 562 N~idt-IP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 562 NVIDT-IPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEK 640 (906)
T ss_pred ccccc-CChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 98764 557889999999999999988887765543 2 345688999999988863 2347777766666
Q ss_pred HHh
Q 002241 508 LDK 510 (948)
Q Consensus 508 ~~~ 510 (948)
+++
T Consensus 641 I~R 643 (906)
T KOG2004|consen 641 ICR 643 (906)
T ss_pred HHH
Confidence 654
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.20 E-value=1.2e-10 Score=144.20 Aligned_cols=165 Identities=18% Similarity=0.222 Sum_probs=113.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHH-----------HHHhhhcccccCCCcEEEecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL-----------DVVQMNSVMADSRPKCLVIDE 379 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~-----------~~~~~~sv~~~~kp~iLIIDE 379 (948)
..+++|+||||+||||+++.+|+.+|..++.++.+..+....+..... ..+.. ......||+|||
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~----~~~~~~villDE 424 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAK----VGVKNPLFLLDE 424 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHh----cCCCCCEEEEEC
Confidence 358999999999999999999999999999999887766544432221 11111 122345899999
Q ss_pred cccccCCCh-hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEE
Q 002241 380 IDGALGDGK-GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHV 458 (948)
Q Consensus 380 ID~l~~~~~-~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~ 458 (948)
||.+..+.+ ....+|+++++..+.......... ......++-+|||+|... ...+|+.++.+|.
T Consensus 425 idk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~-------------~~~dls~v~~i~TaN~~~--i~~aLl~R~~ii~ 489 (784)
T PRK10787 425 IDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLE-------------VDYDLSDVMFVATSNSMN--IPAPLLDRMEVIR 489 (784)
T ss_pred hhhcccccCCCHHHHHHHHhccccEEEEeccccc-------------ccccCCceEEEEcCCCCC--CCHHHhcceeeee
Confidence 999976432 235788888864332110000000 001234566888888773 5567889999999
Q ss_pred ecCcCHHHHHHHHHHHhh-----h-----cCCCCCHHHHHHHHHHc
Q 002241 459 FIQPSVSRVVSRLKHICN-----N-----ESMKTSSIALTTLAEYT 494 (948)
Q Consensus 459 F~~p~~~~l~~~L~~I~~-----~-----Egi~id~~~L~~L~e~s 494 (948)
|..++.+++.++.+..+. + ..+.++++++..|++.+
T Consensus 490 ~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 490 LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY 535 (784)
T ss_pred cCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC
Confidence 999999999888766553 1 23578999999999854
No 133
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.8e-11 Score=138.54 Aligned_cols=177 Identities=24% Similarity=0.322 Sum_probs=125.3
Q ss_pred ccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCC-CcEEEecCc
Q 002241 304 RSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSR-PKCLVIDEI 380 (948)
Q Consensus 304 ~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~k-p~iLIIDEI 380 (948)
...|.+.++.+|+|||||+|||.+++++|++.|..++.+|++...++ .+.+..++.+++... ..+ |.||+|||+
T Consensus 211 ~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~---k~~~psii~IdEl 287 (693)
T KOG0730|consen 211 KSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEAL---KFQVPSIIFIDEL 287 (693)
T ss_pred hhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHh---ccCCCeeEeHHhH
Confidence 34566778999999999999999999999999999999999865443 334455566655443 234 999999999
Q ss_pred ccccCCChh-------HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccc
Q 002241 381 DGALGDGKG-------AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQI 453 (948)
Q Consensus 381 D~l~~~~~~-------~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~ 453 (948)
|.+.+...+ ....|+.++.... ...+......++|| +..++++|. .++
T Consensus 288 d~l~p~r~~~~~~e~Rv~sqlltL~dg~~------------------~~~~vivl~atnrp------~sld~alRR-gRf 342 (693)
T KOG0730|consen 288 DALCPKREGADDVESRVVSQLLTLLDGLK------------------PDAKVIVLAATNRP------DSLDPALRR-GRF 342 (693)
T ss_pred hhhCCcccccchHHHHHHHHHHHHHhhCc------------------CcCcEEEEEecCCc------cccChhhhc-CCC
Confidence 999864321 2233444443211 00111123344444 555778876 689
Q ss_pred eEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHH
Q 002241 454 AKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLD 509 (948)
Q Consensus 454 ~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~ 509 (948)
...+.+.-|+......+|+.++++.++. ++..+..|+..+.| |+-+.+....+-+
T Consensus 343 d~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 343 DREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred cceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 78889999998765 6666555544443
No 134
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.17 E-value=1.1e-10 Score=146.22 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=112.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCC----ChHHHHHHHHHHHhhhcccccCCCcEEEe
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDR----SSSTIENKILDVVQMNSVMADSRPKCLVI 377 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~r----s~~~~~~~I~~~~~~~sv~~~~kp~iLII 377 (948)
+.+||+||||||||++|+.+|+.+ ++.++++++++.. ..+.+++++...+.... ...+.||||
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~---~~~~~ILfi 277 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQ---ENNNIILVI 277 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHH---hcCCeEEEE
Confidence 568999999999999999999986 4789999986543 23466777777765432 246789999
Q ss_pred cCcccccCCCh--hH---HHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC-Cch---hhh
Q 002241 378 DEIDGALGDGK--GA---VEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL-YAP---ALR 448 (948)
Q Consensus 378 DEID~l~~~~~--~~---~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl-~~p---~Lr 448 (948)
||||.+.+.+. +. .+.|...+. .-...+|++||.. |.. .-.
T Consensus 278 DEih~l~~~g~~~g~~~~a~lLkp~l~------------------------------rg~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 278 DEVHTLIGAGAAEGAIDAANILKPALA------------------------------RGELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred ecHHHHhcCCCCCCcccHHHHhHHHHh------------------------------CCCcEEEEeCCHHHHHHHHhcCH
Confidence 99999875421 21 122222221 0113356666532 211 112
Q ss_pred hhccceEEEEecCcCHHHHHHHHHHHhh----hcCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHHhc
Q 002241 449 SLRQIAKVHVFIQPSVSRVVSRLKHICN----NESMKTSSIALTTLAEYTECD------IRSCLNTLQFLDKK 511 (948)
Q Consensus 449 ~Lr~~~~iI~F~~p~~~~l~~~L~~I~~----~Egi~id~~~L~~L~e~s~GD------IR~aIn~LQ~~~~~ 511 (948)
.+.+++..|.+..|+.++...+|+.+.. ..++.++++++..+++.+.+- .+.+|..|..++..
T Consensus 328 aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~ 400 (821)
T CHL00095 328 ALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSR 400 (821)
T ss_pred HHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHH
Confidence 3455677889999999988888876543 356778999999999988763 45688888877654
No 135
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=8.6e-10 Score=124.42 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=103.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcceecCCC-CCChHHHHHHHHHHHhhhcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY------------------------HVVEVNASD-DRSSSTIENKILDVVQMNSV 366 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~------------------------~viEiNaSd-~rs~~~~~~~I~~~~~~~sv 366 (948)
..+||+||+|+|||++|+++|+.+-. ++..+.... .-+.+.+++.+..+. ..+.
T Consensus 29 ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~-~~~~ 107 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFS-KSGV 107 (329)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHh-hCCc
Confidence 67899999999999999999998632 122232211 112344444333322 2222
Q ss_pred cccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchh
Q 002241 367 MADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPA 446 (948)
Q Consensus 367 ~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~ 446 (948)
.+..+|+||||+|.+. ..+.++|++.++.... ..-+|++|++.. ..
T Consensus 108 --~~~~kvviI~~a~~~~---~~a~NaLLK~LEEPp~----------------------------~~~~Il~t~~~~-~l 153 (329)
T PRK08058 108 --ESNKKVYIIEHADKMT---ASAANSLLKFLEEPSG----------------------------GTTAILLTENKH-QI 153 (329)
T ss_pred --ccCceEEEeehHhhhC---HHHHHHHHHHhcCCCC----------------------------CceEEEEeCChH-hC
Confidence 3567999999999984 4688999999975322 244788888765 45
Q ss_pred hhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 002241 447 LRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTL 505 (948)
Q Consensus 447 Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~L 505 (948)
+..++++|.++.|.+++.+++.+.|. .+| ++......++.. .|+++.|+..+
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~-~g~~~~A~~l~ 205 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGL-TNSVEEALALS 205 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHH-cCCHHHHHHHh
Confidence 66789999999999999999977775 456 455555556655 47888776543
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.14 E-value=3.9e-10 Score=138.73 Aligned_cols=170 Identities=17% Similarity=0.230 Sum_probs=108.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHH-----------HHhhhcccccCCCcEEEecCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILD-----------VVQMNSVMADSRPKCLVIDEI 380 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~-----------~~~~~sv~~~~kp~iLIIDEI 380 (948)
..+||+||||||||++|+++|+.++..++.+|+++......+...+.. .+. ..+ .....+||+||||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~-~~v-~~~p~sVlllDEi 566 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLT-DAV-IKHPHAVLLLDEI 566 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHH-HHH-HhCCCcEEEeccH
Confidence 369999999999999999999999999999999876443222222110 000 001 1234689999999
Q ss_pred ccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc----------------
Q 002241 381 DGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---------------- 444 (948)
Q Consensus 381 D~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---------------- 444 (948)
|.+.. ..++.|+.+++....... .+......+.-||+++|.-..
T Consensus 567 eka~~---~v~~~LLq~ld~G~ltd~-----------------~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~ 626 (758)
T PRK11034 567 EKAHP---DVFNLLLQVMDNGTLTDN-----------------NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNST 626 (758)
T ss_pred hhhhH---HHHHHHHHHHhcCeeecC-----------------CCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhH
Confidence 99853 678889998875432110 111122345668888883210
Q ss_pred ---hh----h--hhhccceEEEEecCcCHHHHHHHHHHHh-------hhcC--CCCCHHHHHHHHHHc------cCCHHH
Q 002241 445 ---PA----L--RSLRQIAKVHVFIQPSVSRVVSRLKHIC-------NNES--MKTSSIALTTLAEYT------ECDIRS 500 (948)
Q Consensus 445 ---p~----L--r~Lr~~~~iI~F~~p~~~~l~~~L~~I~-------~~Eg--i~id~~~L~~L~e~s------~GDIR~ 500 (948)
.. + .-+.++..+|.|++.+.+.+.+++...+ ...| +.+++.++..|++.. ...+|.
T Consensus 627 ~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r 706 (758)
T PRK11034 627 DAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMAR 706 (758)
T ss_pred HHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHH
Confidence 00 1 1134466789999999988887775443 2334 467899999999863 235666
Q ss_pred HHH
Q 002241 501 CLN 503 (948)
Q Consensus 501 aIn 503 (948)
+|.
T Consensus 707 ~i~ 709 (758)
T PRK11034 707 VIQ 709 (758)
T ss_pred HHH
Confidence 553
No 137
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.11 E-value=4.5e-10 Score=140.88 Aligned_cols=167 Identities=17% Similarity=0.227 Sum_probs=105.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCC----ChHHHHHHHHHHHhhhcccccCCCcEEEe
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDR----SSSTIENKILDVVQMNSVMADSRPKCLVI 377 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~r----s~~~~~~~I~~~~~~~sv~~~~kp~iLII 377 (948)
..+||+||||||||++|+.+|+.+ |+.++.++.+..- ....++.++...+..-. ....+.||||
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~--~~~~~~ILfI 277 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA--KQEGNVILFI 277 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH--HcCCCeEEEE
Confidence 468899999999999999999987 7888888776532 23456666666654311 1246889999
Q ss_pred cCcccccCCC--hhH---HHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC-CCc---hhhh
Q 002241 378 DEIDGALGDG--KGA---VEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND-LYA---PALR 448 (948)
Q Consensus 378 DEID~l~~~~--~~~---~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND-l~~---p~Lr 448 (948)
||||.+.+.+ .+. .+.|...+.. -..-+|..|+. .|. ..-.
T Consensus 278 DEih~l~~~~~~~~~~d~~~~lkp~l~~------------------------------g~l~~IgaTt~~e~r~~~~~d~ 327 (857)
T PRK10865 278 DELHTMVGAGKADGAMDAGNMLKPALAR------------------------------GELHCVGATTLDEYRQYIEKDA 327 (857)
T ss_pred ecHHHhccCCCCccchhHHHHhcchhhc------------------------------CCCeEEEcCCCHHHHHHhhhcH
Confidence 9999997542 122 2222221110 01123333332 110 0112
Q ss_pred hhccceEEEEecCcCHHHHHHHHHHHhhh----cCCCCCHHHHHHHHHHccCCH------HHHHHHHHHHHh
Q 002241 449 SLRQIAKVHVFIQPSVSRVVSRLKHICNN----ESMKTSSIALTTLAEYTECDI------RSCLNTLQFLDK 510 (948)
Q Consensus 449 ~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~----Egi~id~~~L~~L~e~s~GDI------R~aIn~LQ~~~~ 510 (948)
.+++++..|.+..|+.++...+|+.+..+ .++.++++++...+..+.+=+ ..|+..+..++.
T Consensus 328 al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa 399 (857)
T PRK10865 328 ALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS 399 (857)
T ss_pred HHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhc
Confidence 34445667889999999999999877643 467888999888877664433 235555555554
No 138
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.10 E-value=7.4e-10 Score=139.34 Aligned_cols=168 Identities=18% Similarity=0.242 Sum_probs=109.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCC----ChHHHHHHHHHHHhhhcccccCCCcEEEe
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDR----SSSTIENKILDVVQMNSVMADSRPKCLVI 377 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~r----s~~~~~~~I~~~~~~~sv~~~~kp~iLII 377 (948)
+.+||+||||||||++|+.+|+.+ |++++.++.+... ....++.++...+.... ....+.||||
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~--~~~~~~ILfI 272 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVT--KSEGQIILFI 272 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHH--hcCCCeEEEe
Confidence 568899999999999999999985 6788888765432 22345556666554321 1246899999
Q ss_pred cCcccccCCC--hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC-C------chhhh
Q 002241 378 DEIDGALGDG--KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL-Y------APALR 448 (948)
Q Consensus 378 DEID~l~~~~--~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl-~------~p~Lr 448 (948)
||||.+.+.+ .+..+ ..+++.... ......+|+.+|.. | +++
T Consensus 273 DEih~l~~~g~~~~~~d-~~~~Lk~~l--------------------------~~g~i~~IgaTt~~e~r~~~~~d~a-- 323 (852)
T TIGR03346 273 DELHTLVGAGKAEGAMD-AGNMLKPAL--------------------------ARGELHCIGATTLDEYRKYIEKDAA-- 323 (852)
T ss_pred ccHHHhhcCCCCcchhH-HHHHhchhh--------------------------hcCceEEEEeCcHHHHHHHhhcCHH--
Confidence 9999987532 22221 112221100 01123456655532 1 333
Q ss_pred hhccceEEEEecCcCHHHHHHHHHHHhhh----cCCCCCHHHHHHHHHHccC---C---HHHHHHHHHHHHhc
Q 002241 449 SLRQIAKVHVFIQPSVSRVVSRLKHICNN----ESMKTSSIALTTLAEYTEC---D---IRSCLNTLQFLDKK 511 (948)
Q Consensus 449 ~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~----Egi~id~~~L~~L~e~s~G---D---IR~aIn~LQ~~~~~ 511 (948)
+.+++..|.+..|+.++...+|+.+..+ .++.+.+.++..++..+.+ | ...||..|..+|..
T Consensus 324 -l~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 324 -LERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAAR 395 (852)
T ss_pred -HHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHH
Confidence 3445677899999999999999876544 5678899999999987754 3 45688888877654
No 139
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.10 E-value=1e-09 Score=119.97 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=101.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHH---------HHHHHh----h----------hccc-
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENK---------ILDVVQ----M----------NSVM- 367 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~---------I~~~~~----~----------~sv~- 367 (948)
+.+||.||||||||++|+++|+.+|..++.++++.......+... +..+.. . ..+.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 579999999999999999999999999999998765443322111 011100 0 0000
Q ss_pred ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC-c--
Q 002241 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY-A-- 444 (948)
Q Consensus 368 ~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~-~-- 444 (948)
......+|+||||+.+.. ..+..|+.+++........... ............||+|+|... .
T Consensus 102 A~~~g~~lllDEi~r~~~---~~q~~Ll~~Le~~~~~i~~~~~------------~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP---ETNNVLLSVFEEGVLELPGKRG------------TSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHcCCEEEEcchhhCCH---HHHHHHHHHhcCCeEEccCCCC------------CCceEecCCCCEEEEeeCCccccce
Confidence 112457999999999743 6778888888753321110000 000001122445899999642 1
Q ss_pred -hhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 002241 445 -PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493 (948)
Q Consensus 445 -p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~ 493 (948)
.....|..++..+.+..|+.+...++|...+ .+++..++.|++.
T Consensus 167 ~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~ 211 (262)
T TIGR02640 167 HETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRL 211 (262)
T ss_pred ecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHH
Confidence 1124466678889999999999988887654 3567777777664
No 140
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1e-09 Score=124.95 Aligned_cols=169 Identities=19% Similarity=0.294 Sum_probs=119.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC-----CCcceecCCCCCChHHHHHHHHHHHhh----------------hcccccCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCG-----YHVVEVNASDDRSSSTIENKILDVVQM----------------NSVMADSR 371 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG-----~~viEiNaSd~rs~~~~~~~I~~~~~~----------------~sv~~~~k 371 (948)
.++++||||||||++++-+++++. ..+++|||-..++...+...|.+.+.. ..+.....
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCC
Confidence 499999999999999999999874 448999999999888777776665421 01112456
Q ss_pred CcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC-----chh
Q 002241 372 PKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY-----APA 446 (948)
Q Consensus 372 p~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~-----~p~ 446 (948)
..||++||+|.+..... +.|..++.....+ ..+.-+|.+.|+.. .+.
T Consensus 124 ~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~-------------------------~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 124 TVIVILDEVDALVDKDG---EVLYSLLRAPGEN-------------------------KVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred eEEEEEcchhhhccccc---hHHHHHHhhcccc-------------------------ceeEEEEEEeccHHHHHHhhhh
Confidence 78999999999987544 5566665432210 12345888999864 233
Q ss_pred hhhhccceEEEEecCcCHHHHHHHHHHHhhh--cCCCCCHHHHHHHHH---HccCCHHHHHHHHHHHHh
Q 002241 447 LRSLRQIAKVHVFIQPSVSRVVSRLKHICNN--ESMKTSSIALTTLAE---YTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 447 Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~--Egi~id~~~L~~L~e---~s~GDIR~aIn~LQ~~~~ 510 (948)
+++...... |.|++.+.+++..+|..-++. ..-.++++++..++. ...||.|.+|..|..++.
T Consensus 176 v~s~l~~~~-I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~e 243 (366)
T COG1474 176 VKSSLGPSE-IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGE 243 (366)
T ss_pred hhhccCcce-eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 333332333 899999999999999865542 223477888877765 357899999999987754
No 141
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.06 E-value=2.2e-09 Score=124.01 Aligned_cols=91 Identities=27% Similarity=0.421 Sum_probs=65.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC----hHHHHHHHHHHHhhhcc-cccCCCcEEEecCcccccC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS----SSTIENKILDVVQMNSV-MADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs----~~~~~~~I~~~~~~~sv-~~~~kp~iLIIDEID~l~~ 385 (948)
...+||+||||||||++|+++|+.++..++.++++.... +..+...+...++.... .....+.||||||||.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 368999999999999999999999999999999976432 12333334333332110 1134678999999999964
Q ss_pred C-----------ChhHHHHHHHHHHhh
Q 002241 386 D-----------GKGAVEVILKMVSAE 401 (948)
Q Consensus 386 ~-----------~~~~~~~Ll~li~~~ 401 (948)
. +.+.+++|+++++..
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhcC
Confidence 3 125788999999743
No 142
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=2e-09 Score=121.44 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=114.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcceecCC---CCCChHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------------HVVEVNAS---DDRSSSTIENKILDVVQ 362 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------------~viEiNaS---d~rs~~~~~~~I~~~~~ 362 (948)
.+..+||+||+|+||+++|..+|+.+-+ ++..+... ...+.+.+++.+..+..
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 3468999999999999999999997632 23333221 12344556554433332
Q ss_pred hhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC
Q 002241 363 MNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL 442 (948)
Q Consensus 363 ~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl 442 (948)
.+ ..+..+|+|||++|.+.. .+.++|++++++... ..-+|++|++.
T Consensus 103 -~~--~~g~~kV~iI~~ae~m~~---~AaNaLLKtLEEPp~----------------------------~t~fiL~t~~~ 148 (334)
T PRK07993 103 -HA--RLGGAKVVWLPDAALLTD---AAANALLKTLEEPPE----------------------------NTWFFLACREP 148 (334)
T ss_pred -cc--ccCCceEEEEcchHhhCH---HHHHHHHHHhcCCCC----------------------------CeEEEEEECCh
Confidence 22 246789999999999954 788999999986432 23478888775
Q ss_pred CchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Q 002241 443 YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQ 506 (948)
Q Consensus 443 ~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ 506 (948)
.. .|..+|++|..+.|.+|+.+.+...|.. + ..++.+.+..++..++|++..|+..++
T Consensus 149 ~~-lLpTIrSRCq~~~~~~~~~~~~~~~L~~---~--~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 149 AR-LLATLRSRCRLHYLAPPPEQYALTWLSR---E--VTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred hh-ChHHHHhccccccCCCCCHHHHHHHHHH---c--cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 53 5667899999999999999999888853 2 246777788889999999999886654
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.04 E-value=2.7e-09 Score=133.68 Aligned_cols=170 Identities=16% Similarity=0.207 Sum_probs=115.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHH---------------HHHHHHhhhcccccCCCcE
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIEN---------------KILDVVQMNSVMADSRPKC 374 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~---------------~I~~~~~~~sv~~~~kp~i 374 (948)
++||+||||+|||.+|++||+.+ +-.++.+|.|+......+.. .+.+++. ...++|
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~------~~p~sv 671 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVR------RKPYSV 671 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHH------hCCCcE
Confidence 68999999999999999999997 34678888775433222111 1222222 356789
Q ss_pred EEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc----------
Q 002241 375 LVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---------- 444 (948)
Q Consensus 375 LIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---------- 444 (948)
|+||||+.+. ....+.|+.++....... ..|......+..||||+|-...
T Consensus 672 vllDEieka~---~~v~~~Llq~ld~g~l~d-----------------~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~ 731 (852)
T TIGR03345 672 VLLDEVEKAH---PDVLELFYQVFDKGVMED-----------------GEGREIDFKNTVILLTSNAGSDLIMALCADPE 731 (852)
T ss_pred EEEechhhcC---HHHHHHHHHHhhcceeec-----------------CCCcEEeccccEEEEeCCCchHHHHHhccCcc
Confidence 9999999774 467888998887643211 1122233446778888884110
Q ss_pred --h---h--------h-----hhhccceEEEEecCcCHHHHHHHHHHHhhh--------cC--CCCCHHHHHHHHHHccC
Q 002241 445 --P---A--------L-----RSLRQIAKVHVFIQPSVSRVVSRLKHICNN--------ES--MKTSSIALTTLAEYTEC 496 (948)
Q Consensus 445 --p---~--------L-----r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~--------Eg--i~id~~~L~~L~e~s~G 496 (948)
+ . + ..+..++.+|.|.+.+.+.+.+++...+.. .| +.++++++..|++.+.+
T Consensus 732 ~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~ 811 (852)
T TIGR03345 732 TAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTE 811 (852)
T ss_pred cCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCC
Confidence 0 0 0 113446679999999999988887654322 24 47899999999999876
Q ss_pred ---CHHHHHHHHHHH
Q 002241 497 ---DIRSCLNTLQFL 508 (948)
Q Consensus 497 ---DIR~aIn~LQ~~ 508 (948)
+.|.+.+.+|-.
T Consensus 812 ~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 812 VESGARNIDAILNQT 826 (852)
T ss_pred CCCChHHHHHHHHHH
Confidence 799999888764
No 144
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=4e-09 Score=117.87 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=109.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC---------------------ccee--cCCCCC---ChHHHHHHHHHHHhhh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH---------------------VVEV--NASDDR---SSSTIENKILDVVQMN 364 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~---------------------viEi--NaSd~r---s~~~~~~~I~~~~~~~ 364 (948)
+..+||+||+|+||+++|..+|+.+.+. +..+ .+.+.. ......+.|++..+..
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4689999999999999999999875321 2222 121111 0112233444444322
Q ss_pred ccc-ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC
Q 002241 365 SVM-ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY 443 (948)
Q Consensus 365 sv~-~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~ 443 (948)
... ..++.+|+|||++|.+. ..+.++|+++++... .+..+|++|+...
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~---~~AaNaLLKtLEEPp----------------------------~~~~fiL~~~~~~ 154 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN---RAACNALLKTLEEPS----------------------------PGRYLWLISAQPA 154 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC---HHHHHHHHHHhhCCC----------------------------CCCeEEEEECChh
Confidence 221 23567999999999994 478899999998532 2356899998866
Q ss_pred chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 002241 444 APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTL 505 (948)
Q Consensus 444 ~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~L 505 (948)
. .|..+|++|..+.|.+|+.+++...|.. .| ++......++..++|..-.++..+
T Consensus 155 ~-lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 155 R-LPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred h-CchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHh
Confidence 4 5678899999999999999999888863 34 455656677888999988876544
No 145
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=4.3e-09 Score=117.79 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=107.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcceecC--CCCCChHHHHHHHHHHHhhh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY------------------------HVVEVNA--SDDRSSSTIENKILDVVQMN 364 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~------------------------~viEiNa--Sd~rs~~~~~~~I~~~~~~~ 364 (948)
+..+||+||.|+||+++|..+|+.+-+ +++.+.. ....+.+.+++.+..+. ..
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~-~~ 102 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS-QH 102 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh-hc
Confidence 468999999999999999999997633 2333332 12234455554333322 22
Q ss_pred cccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc
Q 002241 365 SVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA 444 (948)
Q Consensus 365 sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~ 444 (948)
. ..++.+|+|||++|.+.. .+.++|++.++.... ..-+|++|++...
T Consensus 103 ~--~~g~~KV~iI~~a~~m~~---~AaNaLLKtLEEPp~----------------------------~~~fiL~t~~~~~ 149 (325)
T PRK06871 103 A--QQGGNKVVYIQGAERLTE---AAANALLKTLEEPRP----------------------------NTYFLLQADLSAA 149 (325)
T ss_pred c--ccCCceEEEEechhhhCH---HHHHHHHHHhcCCCC----------------------------CeEEEEEECChHh
Confidence 2 246789999999999954 788999999986432 2347777776553
Q ss_pred hhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 002241 445 PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNT 504 (948)
Q Consensus 445 p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~ 504 (948)
.+..++++|..+.|.+|+.+++...|...+. .+...+..++..++|..-.++..
T Consensus 150 -llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g~p~~A~~~ 203 (325)
T PRK06871 150 -LLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-----AEISEILTALRINYGRPLLALTF 203 (325)
T ss_pred -CchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCCCHHHHHHH
Confidence 5667899999999999999999999986542 23444566677788888665443
No 146
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.02 E-value=4.8e-09 Score=119.59 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=116.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CC--CcceecCCCCCChHHHHHHHHHHHhhhccc-ccCCCcEEEecCcccc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GY--HVVEVNASDDRSSSTIENKILDVVQMNSVM-ADSRPKCLVIDEIDGA 383 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~--~viEiNaSd~rs~~~~~~~I~~~~~~~sv~-~~~kp~iLIIDEID~l 383 (948)
..+.|+||||.|+|||+|+|++++++ +. .|+.+.+.+.... +-..+++ -.+..+. .. .-.+|+||||+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~--~v~a~~~-~~~~~Fk~~y-~~dlllIDDiq~l 187 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTND--FVKALRD-NEMEKFKEKY-SLDLLLIDDIQFL 187 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHH--HHHHHHh-hhHHHHHHhh-ccCeeeechHhHh
Confidence 45789999999999999999999975 33 4555555432111 1111111 0000111 12 4579999999987
Q ss_pred cCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC------CCchhhhhhccceEEE
Q 002241 384 LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND------LYAPALRSLRQIAKVH 457 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND------l~~p~Lr~Lr~~~~iI 457 (948)
.+.. .....++.+++.-..+ ..-||++|.. ...+.|++...++.++
T Consensus 188 ~gk~-~~qeefFh~FN~l~~~---------------------------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~ 239 (408)
T COG0593 188 AGKE-RTQEEFFHTFNALLEN---------------------------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVV 239 (408)
T ss_pred cCCh-hHHHHHHHHHHHHHhc---------------------------CCEEEEEcCCCchhhccccHHHHHHHhceeEE
Confidence 6643 3466777777643220 1125555532 1235666666789999
Q ss_pred EecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 458 VFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
.+.+|+.+.++.+|+..+...++.++++++..|+.....|+|.....|..+.
T Consensus 240 ~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~ 291 (408)
T COG0593 240 EIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLD 291 (408)
T ss_pred eeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999777776553
No 147
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.9e-10 Score=119.89 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=81.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC---------CcceecCCCCCChHH---------HHHHHHHHHhhhcccccCCCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY---------HVVEVNASDDRSSST---------IENKILDVVQMNSVMADSRPK 373 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~---------~viEiNaSd~rs~~~---------~~~~I~~~~~~~sv~~~~kp~ 373 (948)
|.+|||||||||||+|++++|+++.. .++|||+-..-++.- +-++|.+.+. ..+.-.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~-----d~~~lV 252 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVE-----DRGNLV 252 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHh-----CCCcEE
Confidence 89999999999999999999999842 578999977655431 1223333332 245668
Q ss_pred EEEecCcccccCC---------Ch---hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC
Q 002241 374 CLVIDEIDGALGD---------GK---GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND 441 (948)
Q Consensus 374 iLIIDEID~l~~~---------~~---~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND 441 (948)
|++|||+..+... .. ..+++|+..+..-.. ..+. +|+++.+
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~--------------------------~~Nv-liL~TSN 305 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR--------------------------YPNV-LILATSN 305 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc--------------------------CCCE-EEEeccc
Confidence 9999999987421 11 234555555542111 1223 4444444
Q ss_pred CCchhhhhhccceEEE-EecCcCHHHHHHHHHHH
Q 002241 442 LYAPALRSLRQIAKVH-VFIQPSVSRVVSRLKHI 474 (948)
Q Consensus 442 l~~p~Lr~Lr~~~~iI-~F~~p~~~~l~~~L~~I 474 (948)
+....-..+-.++.++ .+.+|+...+.++|+..
T Consensus 306 l~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilksc 339 (423)
T KOG0744|consen 306 LTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSC 339 (423)
T ss_pred hHHHHHHHhhhHhhheeecCCccHHHHHHHHHHH
Confidence 4332223345555554 44788888888887643
No 148
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.99 E-value=9.5e-09 Score=120.90 Aligned_cols=170 Identities=20% Similarity=0.195 Sum_probs=120.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCCChHHHHHHHHHHHhhhccc--------------
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM-------------- 367 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~-------------- 367 (948)
.++.++|-||+|||.+++.+.+++ .|.++|||+--..+...+...|.+.+.-..+.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 589999999999999999999865 38999999999999888888887766422211
Q ss_pred --ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch
Q 002241 368 --ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP 445 (948)
Q Consensus 368 --~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p 445 (948)
...+++||+|||+|.|....+..+..|+++... ...+--||+|+|....|
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~----------------------------~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL----------------------------KNSKLVVIAIANTMDLP 554 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC----------------------------CCCceEEEEecccccCH
Confidence 245688999999999987655554444444321 12234588999977654
Q ss_pred h--hh---hhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH---ccCCHHHHHHHHHHHHh
Q 002241 446 A--LR---SLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY---TECDIRSCLNTLQFLDK 510 (948)
Q Consensus 446 ~--Lr---~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~---s~GDIR~aIn~LQ~~~~ 510 (948)
. |- ..|--...|.|.+.+.+++.+++..-+..- -.++.++++.++.. -.||.|.|+..+..++.
T Consensus 555 Er~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 555 ERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred HHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2 11 112244568999999999998886544332 13466777766664 47999999988776653
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.98 E-value=4.7e-09 Score=130.30 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=104.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHH---------------HHHHHhhhcccccCCCcEEEe
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENK---------------ILDVVQMNSVMADSRPKCLVI 377 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~---------------I~~~~~~~sv~~~~kp~iLII 377 (948)
.+||+||+|||||++|+++|+.++..++.++.|+......+... +.+++. ....+||||
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~------~~p~~Vvll 559 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVR------KHPHCVLLL 559 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHH------hCCCeEEEE
Confidence 58999999999999999999999999999998875443222221 222221 245689999
Q ss_pred cCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch------------
Q 002241 378 DEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP------------ 445 (948)
Q Consensus 378 DEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p------------ 445 (948)
||||.+.. ...+.|+++++...... ..+......+.-||||+|--...
T Consensus 560 DEieka~~---~~~~~Ll~~ld~g~~~d-----------------~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~ 619 (731)
T TIGR02639 560 DEIEKAHP---DIYNILLQVMDYATLTD-----------------NNGRKADFRNVILIMTSNAGASEMSKPPIGFGSEN 619 (731)
T ss_pred echhhcCH---HHHHHHHHhhccCeeec-----------------CCCcccCCCCCEEEECCCcchhhhhhccCCcchhh
Confidence 99998844 68888999887543211 01111223345577777642110
Q ss_pred -------h----hh--hhccceEEEEecCcCHHHHHHHHHHHhhh-------c--CCCCCHHHHHHHHHHc
Q 002241 446 -------A----LR--SLRQIAKVHVFIQPSVSRVVSRLKHICNN-------E--SMKTSSIALTTLAEYT 494 (948)
Q Consensus 446 -------~----Lr--~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~-------E--gi~id~~~L~~L~e~s 494 (948)
. ++ -+.++..+|.|.+.+.+.+.+++...+.. . .+.++++++..|++.+
T Consensus 620 ~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 620 VESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKG 690 (731)
T ss_pred hHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhC
Confidence 0 01 12346689999999999998888766542 2 2577899999999863
No 150
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.9e-09 Score=129.07 Aligned_cols=181 Identities=22% Similarity=0.263 Sum_probs=119.6
Q ss_pred cccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--C---CcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEE
Q 002241 303 TRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG--Y---HVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCL 375 (948)
Q Consensus 303 ~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG--~---~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iL 375 (948)
++..+...++.+|||||||||||..|+++|.++- + .++--...|.-+++ ..+..++-.+..+. ...|.||
T Consensus 291 f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~---k~qPSII 367 (1080)
T KOG0732|consen 291 FDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQ---KTQPSII 367 (1080)
T ss_pred hhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHh---ccCceEE
Confidence 4445566679999999999999999999999873 2 23333344444443 23334444443332 5689999
Q ss_pred EecCcccccCCCh---hHH-----HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh
Q 002241 376 VIDEIDGALGDGK---GAV-----EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL 447 (948)
Q Consensus 376 IIDEID~l~~~~~---~~~-----~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L 447 (948)
++|||||+..-.. ..+ ..||.++.. .. +...-..+++++|| |.-+|+|
T Consensus 368 ffdeIdGlapvrSskqEqih~SIvSTLLaLmdG--------ld----------sRgqVvvigATnRp------da~dpaL 423 (1080)
T KOG0732|consen 368 FFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG--------LD----------SRGQVVVIGATNRP------DAIDPAL 423 (1080)
T ss_pred eccccccccccccchHHHhhhhHHHHHHHhccC--------CC----------CCCceEEEcccCCc------cccchhh
Confidence 9999999975331 111 223333321 10 00011123455555 6667888
Q ss_pred hhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHh
Q 002241 448 RSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDK 510 (948)
Q Consensus 448 r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~ 510 (948)
|...++...+.|..|+.+...++|...-.+..-++....+..|++.+-| |||..+...-+.+.
T Consensus 424 RRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~ 490 (1080)
T KOG0732|consen 424 RRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIAL 490 (1080)
T ss_pred cCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhh
Confidence 8888899999999999999999998888887778899999999997644 77765554444433
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.93 E-value=1e-08 Score=126.44 Aligned_cols=170 Identities=17% Similarity=0.191 Sum_probs=107.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCCC----hHHHHHHHHHHHhhhcccccCCCcEE
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDRS----SSTIENKILDVVQMNSVMADSRPKCL 375 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~rs----~~~~~~~I~~~~~~~sv~~~~kp~iL 375 (948)
....+||+||||||||++|+.+|... +..++.++.+.... .+.++.++...+.... ...+.||
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~---~~~~~IL 282 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE---QDTNSIL 282 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHH---hcCCCEE
Confidence 34678999999999999999999864 44555555443221 2345555655554221 2457899
Q ss_pred EecCcccccCCCh--hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC-------Cchh
Q 002241 376 VIDEIDGALGDGK--GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL-------YAPA 446 (948)
Q Consensus 376 IIDEID~l~~~~~--~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl-------~~p~ 446 (948)
||||||.+.+.+. +....+..++..-.. .....+|..||.. .+++
T Consensus 283 fIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--------------------------~g~i~vIgATt~~E~~~~~~~D~A 336 (758)
T PRK11034 283 FIDEIHTIIGAGAASGGQVDAANLIKPLLS--------------------------SGKIRVIGSTTYQEFSNIFEKDRA 336 (758)
T ss_pred EeccHHHHhccCCCCCcHHHHHHHHHHHHh--------------------------CCCeEEEecCChHHHHHHhhccHH
Confidence 9999999865432 111122222221000 0113355555532 1344
Q ss_pred hhhhccceEEEEecCcCHHHHHHHHHHHhh----hcCCCCCHHHHHHHHHHccCCHH------HHHHHHHHHHhc
Q 002241 447 LRSLRQIAKVHVFIQPSVSRVVSRLKHICN----NESMKTSSIALTTLAEYTECDIR------SCLNTLQFLDKK 511 (948)
Q Consensus 447 Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~----~Egi~id~~~L~~L~e~s~GDIR------~aIn~LQ~~~~~ 511 (948)
| .++...|.+..|+.++...+|+.+.. .+++.++++++..+++.+..-|. .+|..|.-+|..
T Consensus 337 L---~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 337 L---ARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred H---HhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHh
Confidence 4 33557899999999999999986654 46789999999998887654332 688888777653
No 152
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.92 E-value=1.1e-08 Score=117.62 Aligned_cols=88 Identities=28% Similarity=0.436 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC----hHHHHHHHHHHHhhhcc-cccCCCcEEEecCcccccCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS----SSTIENKILDVVQMNSV-MADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs----~~~~~~~I~~~~~~~sv-~~~~kp~iLIIDEID~l~~~ 386 (948)
..+||+||||||||++|+++|+.++..++.++++.... +......+..++..... .....+.+|+|||||.+...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 58999999999999999999999999999888876432 12233344443332111 11345779999999988642
Q ss_pred -----------ChhHHHHHHHHHH
Q 002241 387 -----------GKGAVEVILKMVS 399 (948)
Q Consensus 387 -----------~~~~~~~Ll~li~ 399 (948)
+.+.++.|+++++
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iLe 220 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKIIE 220 (413)
T ss_pred hccccccccccchhHHHHHHHHhh
Confidence 1267889999995
No 153
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.91 E-value=9.2e-09 Score=104.41 Aligned_cols=117 Identities=24% Similarity=0.324 Sum_probs=79.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------CcceecCCCC---CChHHHHHHHHHHHhhh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY-----------------------HVVEVNASDD---RSSSTIENKILDVVQMN 364 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~-----------------------~viEiNaSd~---rs~~~~~~~I~~~~~~~ 364 (948)
+..+||+||+|+||+++|..+|+.+-. ++++++.... -..+.+++ +...+...
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~-i~~~~~~~ 97 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIRE-IIEFLSLS 97 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHH-HHHHCTSS
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHH-HHHHHHHH
Confidence 367999999999999999999997521 3444544433 23455552 32333222
Q ss_pred cccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc
Q 002241 365 SVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA 444 (948)
Q Consensus 365 sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~ 444 (948)
+. .+..+|+||||+|.+.. .+.++|++.++.... +.-+|++|++...
T Consensus 98 ~~--~~~~KviiI~~ad~l~~---~a~NaLLK~LEepp~----------------------------~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 98 PS--EGKYKVIIIDEADKLTE---EAQNALLKTLEEPPE----------------------------NTYFILITNNPSK 144 (162)
T ss_dssp -T--TSSSEEEEEETGGGS-H---HHHHHHHHHHHSTTT----------------------------TEEEEEEES-GGG
T ss_pred Hh--cCCceEEEeehHhhhhH---HHHHHHHHHhcCCCC----------------------------CEEEEEEECChHH
Confidence 22 35789999999999954 789999999986432 2448888888765
Q ss_pred hhhhhhccceEEEEecCc
Q 002241 445 PALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 445 p~Lr~Lr~~~~iI~F~~p 462 (948)
.+.+++++|..++|.+.
T Consensus 145 -il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 145 -ILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp -S-HHHHTTSEEEEE---
T ss_pred -ChHHHHhhceEEecCCC
Confidence 67889999999999865
No 154
>PF08519 RFC1: Replication factor RFC1 C terminal domain; InterPro: IPR013725 This is the C-terminal domain of replication factor C, RFC1. RFC complexes hydrolyse ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo [, ]. ; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_A.
Probab=98.91 E-value=1.2e-09 Score=109.55 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=47.9
Q ss_pred hhhhhHHhHHHHhcCCccccccchhHHHHHHHHhh-ccCC-CCCCCChhHHHHHHHHHHHHHHHHHHHhcCchhhhhccC
Q 002241 608 LGNSDLMHQYIMRTQQMPLYVYQPPLAITVHRLVS-QIQK-PNLEWPKSYQRYRNAFMEKMDIFKSWHSKIPPYISRHLS 685 (948)
Q Consensus 608 Ls~~D~l~~~i~~~Q~~~L~~Y~~~~~~a~h~lfa-~~~~-~~i~~P~~~~~~~~~~~~~~~~l~s~~~~i~~~~~~~~s 685 (948)
+|++|++++.|+++|+|+|+++..++.......+. +... .++.||.|+.+++.. .+++.+++.++.++.... ..+
T Consensus 1 IS~gDlv~~~Ir~~q~WsLlP~~a~~S~V~P~~~~~g~~~~~~~~FP~wLGknS~~-~K~~Rll~el~~h~~~~~--s~~ 77 (155)
T PF08519_consen 1 ISDGDLVDRQIRSTQQWSLLPTHAFFSCVLPASFMRGSMSGERPNFPSWLGKNSKQ-NKNKRLLQELQSHMRLKT--SAS 77 (155)
T ss_dssp HHHHHHHHHHHTT-SSGGGHHHHHHHHTHHHHHTT-EE-SS------SHHHHHHHH-HHHHHHHHHHHTTTTT-------
T ss_pred CcHHHHHHHHhhcCCchhhhHHHHHHHhhhhHHHhcCCCCcccCCCcHHHHHHhHH-HHHHHHHHHHHHHhcccc--cCC
Confidence 58899999999999999999998887654443333 3322 378999999998763 456788999988876443 557
Q ss_pred cchhHHHhHhhhhhhhCCCCcchhhhhcCCHHHHHHHHHHHHHHhhcCceEEe
Q 002241 686 TESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYSLTYKN 738 (948)
Q Consensus 686 ~~~l~~d~lp~ll~ilsp~~lrpv~~~~~~~~Ek~~l~~lv~~M~~~~L~~~~ 738 (948)
...+.+|++|+|...|.-| |...+++.+..+|++|.+|+|+-+.
T Consensus 78 ~~~v~~~Ylp~L~~~l~~p---------L~~~~~~~v~~vi~~Md~Y~Ltred 121 (155)
T PF08519_consen 78 KSEVRLDYLPLLRQKLTQP---------LIEQGKDGVDEVIDLMDEYGLTRED 121 (155)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHcCcccHHHHHHHHHHhCCCHHH
Confidence 7889999998888765432 3345677999999999999999864
No 155
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.91 E-value=1.5e-08 Score=110.49 Aligned_cols=167 Identities=17% Similarity=0.157 Sum_probs=98.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-Ccc--eecCCCCCChHHHHHHHHHHHhhh------------------ccccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY-HVV--EVNASDDRSSSTIENKILDVVQMN------------------SVMAD 369 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~-~vi--EiNaSd~rs~~~~~~~I~~~~~~~------------------sv~~~ 369 (948)
...++|+||+|+||||+++.+++++.. .++ .+-.+. .+...+...|...+... .....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 357999999999999999999998752 222 111111 11112222222111100 00124
Q ss_pred CCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC-----Cc
Q 002241 370 SRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL-----YA 444 (948)
Q Consensus 370 ~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl-----~~ 444 (948)
+++.+|||||++.+.. ..++.|..+.+.... .....+||++.... ..
T Consensus 122 ~~~~vliiDe~~~l~~---~~~~~l~~l~~~~~~-------------------------~~~~~~vvl~g~~~~~~~l~~ 173 (269)
T TIGR03015 122 GKRALLVVDEAQNLTP---ELLEELRMLSNFQTD-------------------------NAKLLQIFLVGQPEFRETLQS 173 (269)
T ss_pred CCCeEEEEECcccCCH---HHHHHHHHHhCcccC-------------------------CCCeEEEEEcCCHHHHHHHcC
Confidence 5678999999998743 334433332221000 01123445554321 12
Q ss_pred hhhhhhcc-ceEEEEecCcCHHHHHHHHHHHhhhcC----CCCCHHHHHHHHHHccCCHHHHHHHHH
Q 002241 445 PALRSLRQ-IAKVHVFIQPSVSRVVSRLKHICNNES----MKTSSIALTTLAEYTECDIRSCLNTLQ 506 (948)
Q Consensus 445 p~Lr~Lr~-~~~iI~F~~p~~~~l~~~L~~I~~~Eg----i~id~~~L~~L~e~s~GDIR~aIn~LQ 506 (948)
+.+.++++ ++..+++.+.+.+++...+...+...| ..++++++..|++.|+|+.|.+-..+.
T Consensus 174 ~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~ 240 (269)
T TIGR03015 174 PQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCD 240 (269)
T ss_pred chhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHH
Confidence 23334444 466788999999999999988876544 468999999999999999998444333
No 156
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.90 E-value=7e-09 Score=100.29 Aligned_cols=87 Identities=36% Similarity=0.484 Sum_probs=60.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHH--HHhhhcccccCCCcEEEecCcccccC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILD--VVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~--~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
.++++|+||||+|||++++.+++++ ++.++.++++...........+.. ............+.+|||||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4789999999999999999999998 899999999876665444333321 01111111245689999999998722
Q ss_pred CChhHHHHHHHHHHh
Q 002241 386 DGKGAVEVILKMVSA 400 (948)
Q Consensus 386 ~~~~~~~~Ll~li~~ 400 (948)
.....++.++..
T Consensus 99 ---~~~~~~~~~i~~ 110 (151)
T cd00009 99 ---GAQNALLRVLET 110 (151)
T ss_pred ---HHHHHHHHHHHh
Confidence 344556666653
No 157
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=2.4e-08 Score=111.57 Aligned_cols=153 Identities=15% Similarity=0.144 Sum_probs=106.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------CcceecCCC---CCChHHHHHHHHHHHhh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGY-----------------------HVVEVNASD---DRSSSTIENKILDVVQM 363 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~-----------------------~viEiNaSd---~rs~~~~~~~I~~~~~~ 363 (948)
.+..+||+||.|+||+++|+.+|+.+-. +++.+.+.. .-+.+.++..+ ..+..
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~-~~~~~ 102 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCN-RLAQE 102 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHH-HHHhh
Confidence 3468999999999999999999987532 333443321 12334454322 22222
Q ss_pred hcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC
Q 002241 364 NSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY 443 (948)
Q Consensus 364 ~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~ 443 (948)
.. ..+..+|+|||++|.+. ..+.++|++.++.... +.-+|++|++..
T Consensus 103 ~~--~~~~~kV~iI~~ae~m~---~~AaNaLLKtLEEPp~----------------------------~t~fiL~t~~~~ 149 (319)
T PRK06090 103 SS--QLNGYRLFVIEPADAMN---ESASNALLKTLEEPAP----------------------------NCLFLLVTHNQK 149 (319)
T ss_pred Cc--ccCCceEEEecchhhhC---HHHHHHHHHHhcCCCC----------------------------CeEEEEEECChh
Confidence 22 24567999999999995 4788999999986432 234788888765
Q ss_pred chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 002241 444 APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTL 505 (948)
Q Consensus 444 ~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~L 505 (948)
. .|..++++|..+.|.+|+.+++.+.|.. +|+. ....++..++|....++..+
T Consensus 150 ~-lLpTI~SRCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 150 R-LLPTIVSRCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred h-ChHHHHhcceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHh
Confidence 3 5667899999999999999999888853 4543 23456677889988887543
No 158
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.88 E-value=5.9e-08 Score=103.30 Aligned_cols=144 Identities=15% Similarity=0.223 Sum_probs=99.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~ 387 (948)
.+++||+|+.|||||++++++..++ |+.+||+...+...-..+.+.+.. ...+-||++||+- +...
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~---------~~~kFIlf~DDLs--Fe~~ 120 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD---------RPYKFILFCDDLS--FEEG 120 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc---------CCCCEEEEecCCC--CCCC
Confidence 3689999999999999999999975 899999999888776655544431 2356799999874 4444
Q ss_pred hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC------------------CC-----c
Q 002241 388 KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND------------------LY-----A 444 (948)
Q Consensus 388 ~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND------------------l~-----~ 444 (948)
....+.|-.+++.+.... ..+.-|..|+|- ++ .
T Consensus 121 d~~yk~LKs~LeGgle~~------------------------P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~e 176 (249)
T PF05673_consen 121 DTEYKALKSVLEGGLEAR------------------------PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIE 176 (249)
T ss_pred cHHHHHHHHHhcCccccC------------------------CCcEEEEEecchhhccchhhhhccCCCccccCcchHHH
Confidence 455667777766433211 112223333331 11 1
Q ss_pred hhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 002241 445 PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTT 489 (948)
Q Consensus 445 p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~ 489 (948)
..+.---+|...|.|.+|+.+..++++...+.+.|+.++.+.+..
T Consensus 177 EklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~ 221 (249)
T PF05673_consen 177 EKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQ 221 (249)
T ss_pred HHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 122112348889999999999999999999999999999655433
No 159
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=2.6e-08 Score=112.38 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC-------------------------cceecCCC------------------
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYH-------------------------VVEVNASD------------------ 346 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~-------------------------viEiNaSd------------------ 346 (948)
.+..+||+||+|+||+++|..+|+.+.+. +..+....
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 35789999999999999999999987442 11121110
Q ss_pred CCC-------hHHHHHHHHHHHhhhccc-ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchh
Q 002241 347 DRS-------SSTIENKILDVVQMNSVM-ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPE 418 (948)
Q Consensus 347 ~rs-------~~~~~~~I~~~~~~~sv~-~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~ 418 (948)
..+ .....+.|++.....+.. ..++.+|+|||++|.+.. .+.++|++.++....
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---~AaNaLLKtLEEPp~--------------- 161 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---AAANALLKTLEEPPP--------------- 161 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---HHHHHHHHHhcCCCc---------------
Confidence 000 111123333333322221 246789999999999954 788999999985332
Q ss_pred hhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCH
Q 002241 419 KISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDI 498 (948)
Q Consensus 419 k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDI 498 (948)
+.-+|++|++... .+..++++|..+.|.+|+.+++.+.|... ++ +. ...++..++|..
T Consensus 162 -------------~t~fiL~t~~~~~-LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~--~~~~l~~~~Gsp 219 (342)
T PRK06964 162 -------------GTVFLLVSARIDR-LLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--AD--ADALLAEAGGAP 219 (342)
T ss_pred -------------CcEEEEEECChhh-CcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--Ch--HHHHHHHcCCCH
Confidence 2458888887653 45668889999999999999999998653 33 22 223456678888
Q ss_pred HHHHHHH
Q 002241 499 RSCLNTL 505 (948)
Q Consensus 499 R~aIn~L 505 (948)
..++..+
T Consensus 220 ~~Al~~~ 226 (342)
T PRK06964 220 LAALALA 226 (342)
T ss_pred HHHHHHH
Confidence 8877544
No 160
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.85 E-value=2.7e-08 Score=110.84 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=46.1
Q ss_pred hhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 002241 448 RSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY-TECDIRSCLNTLQFL 508 (948)
Q Consensus 448 r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~-s~GDIR~aIn~LQ~~ 508 (948)
.-|..++.+|.-.+++.+++.++|+.-|+.|++.++++++..|++. ....+|.|++.|..+
T Consensus 334 ~DlLDRllII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 334 LDLLDRLLIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHTTEEEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred cchHhhcEEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 3467799999999999999999999999999999999999999986 467899999877544
No 161
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.85 E-value=1.9e-09 Score=110.41 Aligned_cols=116 Identities=21% Similarity=0.282 Sum_probs=75.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC----CcceecCCCCCChHHHHHHHHHHHhhhcc-cccCCCcEEEecCcccccCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY----HVVEVNASDDRSSSTIENKILDVVQMNSV-MADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~----~viEiNaSd~rs~~~~~~~I~~~~~~~sv-~~~~kp~iLIIDEID~l~~~ 386 (948)
..+||+||+|||||.+|+++|+.++. .++.+|++.....+.....+......... .......||+|||||.+...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 57999999999999999999999996 89999999877733322222222221110 00112249999999998541
Q ss_pred --------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc
Q 002241 387 --------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA 444 (948)
Q Consensus 387 --------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~ 444 (948)
+.+.++.|+.+++...... .++......+.-+||++|--..
T Consensus 84 ~~~~~~v~~~~V~~~LL~~le~g~~~d-----------------~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 84 NSGGADVSGEGVQNSLLQLLEGGTLTD-----------------SYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHHSEEEE-----------------TTCCEEEGTTEEEEEEESSSTH
T ss_pred ccccchhhHHHHHHHHHHHhcccceec-----------------ccceEEEeCCceEEEecccccc
Confidence 1267889999998654321 1122234556778888886554
No 162
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=6.7e-08 Score=109.50 Aligned_cols=167 Identities=23% Similarity=0.221 Sum_probs=111.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CCcceecCCCCCChHHHHHHHHHHH-hhh---------------cccccC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG-----YHVVEVNASDDRSSSTIENKILDVV-QMN---------------SVMADS 370 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG-----~~viEiNaSd~rs~~~~~~~I~~~~-~~~---------------sv~~~~ 370 (948)
..|.++|-||+|||.+.+-+-.+++ ..++.+|+........+-.+|..-+ +.. ......
T Consensus 176 gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k 255 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSK 255 (529)
T ss_pred cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccc
Confidence 5799999999999999996666553 4678999998777665554444433 210 011233
Q ss_pred CCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC--Cchhhh
Q 002241 371 RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL--YAPALR 448 (948)
Q Consensus 371 kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl--~~p~Lr 448 (948)
.+-+||+||+|.+...+++.+-.|+.+-. ....++-+|.|+|-+ .+..|-
T Consensus 256 ~~~llVlDEmD~L~tr~~~vLy~lFewp~----------------------------lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRSQTVLYTLFEWPK----------------------------LPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred ceEEEEechhhHHhhcccceeeeehhccc----------------------------CCcceeeeeeehhhhhHHHHHhh
Confidence 57899999999997655554444433321 112234466677743 344444
Q ss_pred hhcc----ceEEEEecCcCHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHH---ccCCHHHHHHHHH
Q 002241 449 SLRQ----IAKVHVFIQPSVSRVVSRLKHICNNESMK-TSSIALTTLAEY---TECDIRSCLNTLQ 506 (948)
Q Consensus 449 ~Lr~----~~~iI~F~~p~~~~l~~~L~~I~~~Egi~-id~~~L~~L~e~---s~GDIR~aIn~LQ 506 (948)
.|.. --..+.|.+++.++++++|+.-...+... +-+.++..+|.. ..||+|.++...+
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 4443 34678999999999999998776665543 334577777765 4799999987766
No 163
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.84 E-value=2e-08 Score=111.72 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHH----HHHhhh-----ccc-ccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKIL----DVVQMN-----SVM-ADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~----~~~~~~-----sv~-~~~kp~iLIIDEID 381 (948)
+.+||.|||||||||+|+.+|+.+|+.++.|+.+...+...+...-. +-.+.. .+. ....+.+||+||||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin 144 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYD 144 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhh
Confidence 57999999999999999999999999999999987765533322110 000000 000 11356779999999
Q ss_pred cccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC--------Cch----hhhh
Q 002241 382 GALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL--------YAP----ALRS 449 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl--------~~p----~Lr~ 449 (948)
.+.. ..+..|..+++.... .......... ...-..-+|.++|.. |.. ....
T Consensus 145 ~a~p---~~~~~L~~lLE~~~~-----l~i~~~~~~i---------~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~ 207 (327)
T TIGR01650 145 AGRP---DVMFVIQRVLEAGGK-----LTLLDQNRVI---------RAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQ 207 (327)
T ss_pred ccCH---HHHHHHHHHhccCCe-----EEECCCceEe---------cCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHH
Confidence 8854 455666666653211 0000000000 012234478888863 211 1122
Q ss_pred hccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Q 002241 450 LRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY 493 (948)
Q Consensus 450 Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~ 493 (948)
+-++..++.+..|+.+.-.++|...+....-..++..++.+++.
T Consensus 208 lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 208 MDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred HhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 33455567889999998888887654321101134555555553
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.80 E-value=3.4e-08 Score=124.17 Aligned_cols=155 Identities=21% Similarity=0.281 Sum_probs=101.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHH---------------HHHHHHhhhcccccCCCcE
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIEN---------------KILDVVQMNSVMADSRPKC 374 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~---------------~I~~~~~~~sv~~~~kp~i 374 (948)
.+||+||+|||||+||++||+.+ +..++.++.++......+.. .+.+.+. ....+|
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~------~~p~~V 614 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVR------KKPYTV 614 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHH------hCCCeE
Confidence 57899999999999999999986 46788888876533222211 1222221 234589
Q ss_pred EEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc----------
Q 002241 375 LVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---------- 444 (948)
Q Consensus 375 LIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---------- 444 (948)
|||||||.+. ....+.|+++++.+..... ++......+.-||||||-...
T Consensus 615 vllDeieka~---~~v~~~Llq~le~g~~~d~-----------------~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~g 674 (821)
T CHL00095 615 VLFDEIEKAH---PDIFNLLLQILDDGRLTDS-----------------KGRTIDFKNTLIIMTSNLGSKVIETNSGGLG 674 (821)
T ss_pred EEECChhhCC---HHHHHHHHHHhccCceecC-----------------CCcEEecCceEEEEeCCcchHHHHhhccccC
Confidence 9999999884 4688999999876543211 111122345667777774211
Q ss_pred -------------hhhh-------------h-hccceEEEEecCcCHHHHHHHHHHHhhh-------cC--CCCCHHHHH
Q 002241 445 -------------PALR-------------S-LRQIAKVHVFIQPSVSRVVSRLKHICNN-------ES--MKTSSIALT 488 (948)
Q Consensus 445 -------------p~Lr-------------~-Lr~~~~iI~F~~p~~~~l~~~L~~I~~~-------Eg--i~id~~~L~ 488 (948)
..++ . +.++..+|.|.+.+.+.+.+++...+.. .| +.++++++.
T Consensus 675 f~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~ 754 (821)
T CHL00095 675 FELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKT 754 (821)
T ss_pred CcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHH
Confidence 0000 1 2334588999999999988887655432 23 577899999
Q ss_pred HHHHH
Q 002241 489 TLAEY 493 (948)
Q Consensus 489 ~L~e~ 493 (948)
.|++.
T Consensus 755 ~La~~ 759 (821)
T CHL00095 755 LLIEE 759 (821)
T ss_pred HHHHh
Confidence 99996
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.80 E-value=3.3e-08 Score=94.49 Aligned_cols=72 Identities=32% Similarity=0.504 Sum_probs=49.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC---cceecCCCCCChHHH----------------HHHHHHHHhhhcccccCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH---VVEVNASDDRSSSTI----------------ENKILDVVQMNSVMADSRP 372 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~---viEiNaSd~rs~~~~----------------~~~I~~~~~~~sv~~~~kp 372 (948)
.+++|+||||+||||+++.+|++++.. ++.++++........ ...+........ ...+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR---KLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH---hcCC
Confidence 689999999999999999999998775 888888754432111 111222222111 2337
Q ss_pred cEEEecCcccccCC
Q 002241 373 KCLVIDEIDGALGD 386 (948)
Q Consensus 373 ~iLIIDEID~l~~~ 386 (948)
.+|||||++.+...
T Consensus 80 ~viiiDei~~~~~~ 93 (148)
T smart00382 80 DVLILDEITSLLDA 93 (148)
T ss_pred CEEEEECCcccCCH
Confidence 99999999988653
No 166
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=3.2e-08 Score=111.28 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=92.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-------------------------CCcceecCCCC----------CChHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG-------------------------YHVVEVNASDD----------RSSSTIEN 355 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG-------------------------~~viEiNaSd~----------rs~~~~~~ 355 (948)
+..+||+||+|+|||++|+.+|+.+. -+++++.+... -+.+.+++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 46899999999999999999999753 24566665321 13345554
Q ss_pred HHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcE
Q 002241 356 KILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPV 435 (948)
Q Consensus 356 ~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPI 435 (948)
.+ +.+..... .+..+|+|||+++++. ..+.+.|+++++... ....+
T Consensus 101 l~-~~~~~~p~--~~~~kV~iiEp~~~Ld---~~a~naLLk~LEep~----------------------------~~~~~ 146 (325)
T PRK08699 101 II-DNVYLTSV--RGGLRVILIHPAESMN---LQAANSLLKVLEEPP----------------------------PQVVF 146 (325)
T ss_pred HH-HHHhhCcc--cCCceEEEEechhhCC---HHHHHHHHHHHHhCc----------------------------CCCEE
Confidence 33 33332222 3568899999999994 478889999887531 12448
Q ss_pred EEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHH
Q 002241 436 ICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKH 473 (948)
Q Consensus 436 I~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~ 473 (948)
|++|++.. ..+..++++|..+.|.+|+.+++...|..
T Consensus 147 Ilvth~~~-~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 147 LLVSHAAD-KVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred EEEeCChH-hChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 88888766 35567899999999999999999888853
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.78 E-value=7.6e-08 Score=121.37 Aligned_cols=171 Identities=21% Similarity=0.248 Sum_probs=111.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHH---------------HHHHHhhhcccccCCCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENK---------------ILDVVQMNSVMADSRPK 373 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~---------------I~~~~~~~sv~~~~kp~ 373 (948)
..+||+||+|||||++|++||+.+ +..++.++++.......+... +.+.+. .....
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~------~~p~~ 669 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVR------RKPYS 669 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHH------cCCCc
Confidence 468899999999999999999986 568888998865433222211 111111 23457
Q ss_pred EEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch--------
Q 002241 374 CLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP-------- 445 (948)
Q Consensus 374 iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p-------- 445 (948)
|||||||+.+. ...++.|+.++..+.... .++......+.-||||||-....
T Consensus 670 vlllDeieka~---~~v~~~Ll~~l~~g~l~d-----------------~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~ 729 (852)
T TIGR03346 670 VVLFDEVEKAH---PDVFNVLLQVLDDGRLTD-----------------GQGRTVDFRNTVIIMTSNLGSQFIQELAGGD 729 (852)
T ss_pred EEEEeccccCC---HHHHHHHHHHHhcCceec-----------------CCCeEEecCCcEEEEeCCcchHhHhhhcccc
Confidence 99999999884 468889999987643211 11111223456688888852210
Q ss_pred ---h--------hh------hhccceEEEEecCcCHHHHHHHHHHHhh-------hcC--CCCCHHHHHHHHHHc---cC
Q 002241 446 ---A--------LR------SLRQIAKVHVFIQPSVSRVVSRLKHICN-------NES--MKTSSIALTTLAEYT---EC 496 (948)
Q Consensus 446 ---~--------Lr------~Lr~~~~iI~F~~p~~~~l~~~L~~I~~-------~Eg--i~id~~~L~~L~e~s---~G 496 (948)
. +. -+.++..++.|.+++.+.+..++...+. ..| +.++++++..|++.. .+
T Consensus 730 ~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~ 809 (852)
T TIGR03346 730 DYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVY 809 (852)
T ss_pred cHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCC
Confidence 0 10 1234568899999999988877654432 222 578999999999973 46
Q ss_pred CHHHHHHHHHHH
Q 002241 497 DIRSCLNTLQFL 508 (948)
Q Consensus 497 DIR~aIn~LQ~~ 508 (948)
.+|..-+.++-.
T Consensus 810 gaR~L~~~i~~~ 821 (852)
T TIGR03346 810 GARPLKRAIQRE 821 (852)
T ss_pred CchhHHHHHHHH
Confidence 677766666544
No 168
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.76 E-value=3.2e-09 Score=104.33 Aligned_cols=86 Identities=31% Similarity=0.397 Sum_probs=60.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcc------cccCCCcEEEecCcccccCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSV------MADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv------~~~~kp~iLIIDEID~l~~~ 386 (948)
.+||+||||||||++|+.+|+.+++.++.++.+...+...+...+.-....... ....++.++|||||+.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 489999999999999999999999999999999887766554322211010000 012257899999999874
Q ss_pred ChhHHHHHHHHHHhh
Q 002241 387 GKGAVEVILKMVSAE 401 (948)
Q Consensus 387 ~~~~~~~Ll~li~~~ 401 (948)
...+..|+.+++..
T Consensus 79 -~~v~~~L~~ll~~~ 92 (139)
T PF07728_consen 79 -PEVLESLLSLLEER 92 (139)
T ss_dssp -HHHHHTTHHHHSSS
T ss_pred -HHHHHHHHHHHhhC
Confidence 46778888888754
No 169
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.8e-08 Score=113.38 Aligned_cols=165 Identities=25% Similarity=0.228 Sum_probs=109.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC----CCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCG----YHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG----~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
......+||+||+|+|||+||+++++++- +.|..+.+|..+.. +.+...+.+++..+. .-.|.||++|++|
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~---~~~PSiIvLDdld 504 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL---WYAPSIIVLDDLD 504 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHH---hhCCcEEEEcchh
Confidence 34567899999999999999999999874 56667777765443 445555555554332 3579999999999
Q ss_pred cccCCC-----h-h-HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhcc
Q 002241 382 GALGDG-----K-G-AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQ 452 (948)
Q Consensus 382 ~l~~~~-----~-~-~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~ 452 (948)
.+.+.. + + ..+.|...++. ++++-.+.+ ...-+|.+.+.+. .+.|-.-+.
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnq----------------vi~~y~~~~-----~~ia~Iat~qe~qtl~~~L~s~~~ 563 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQ----------------VIKIYLKRN-----RKIAVIATGQELQTLNPLLVSPLL 563 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHH----------------HHHHHHccC-----cEEEEEEechhhhhcChhhcCccc
Confidence 997621 1 1 12333333332 111100000 0122444444332 344443445
Q ss_pred ceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC
Q 002241 453 IAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC 496 (948)
Q Consensus 453 ~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G 496 (948)
+..+++++.|...++..+|..+|.+....+..++|+.++..++|
T Consensus 564 Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEG 607 (952)
T KOG0735|consen 564 FQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEG 607 (952)
T ss_pred eEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC
Confidence 77888999999999999999999988877888889889999888
No 170
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.73 E-value=7.7e-08 Score=103.85 Aligned_cols=82 Identities=24% Similarity=0.296 Sum_probs=54.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhh------hcccccCCCcEEEecCccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQM------NSVMADSRPKCLVIDEIDG 382 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~------~sv~~~~kp~iLIIDEID~ 382 (948)
..++|+||||||||+|+.++|+++ |+.|+.+.+++. ...+...+.. ..+..-.+..||||||++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l------~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~ 173 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI------MSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGV 173 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH------HHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCC
Confidence 479999999999999999999997 788888876542 2222221110 0000123678999999987
Q ss_pred ccCCChhHHHHHHHHHHh
Q 002241 383 ALGDGKGAVEVILKMVSA 400 (948)
Q Consensus 383 l~~~~~~~~~~Ll~li~~ 400 (948)
... .......|..+++.
T Consensus 174 ~~~-s~~~~~~l~~Ii~~ 190 (244)
T PRK07952 174 QTE-SRYEKVIINQIVDR 190 (244)
T ss_pred CCC-CHHHHHHHHHHHHH
Confidence 642 23334566677764
No 171
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.5e-08 Score=109.42 Aligned_cols=140 Identities=23% Similarity=0.267 Sum_probs=89.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC-hHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS-SSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs-~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
....+.+|||||||||||..|+-||++.|.++--+...|.-- +.....+|...+.-.+- ..+.-+|||||.|.++-.
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakk--S~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKK--SRRGLLLFIDEADAFLCE 458 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhh--cccceEEEehhhHHHHHH
Confidence 344588999999999999999999999999998888887643 22344566666654331 345678999999988532
Q ss_pred C---------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEE
Q 002241 387 G---------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVH 457 (948)
Q Consensus 387 ~---------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI 457 (948)
. ..++++|+ -.... + +++ .-+++-+|-.-+-.-.---++.++|
T Consensus 459 RnktymSEaqRsaLNAlL---fRTGd------------q-----Srd--------ivLvlAtNrpgdlDsAV~DRide~v 510 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALL---FRTGD------------Q-----SRD--------IVLVLATNRPGDLDSAVNDRIDEVV 510 (630)
T ss_pred hchhhhcHHHHHHHHHHH---HHhcc------------c-----ccc--------eEEEeccCCccchhHHHHhhhhhee
Confidence 1 12223222 11100 0 111 1233334432211111123478899
Q ss_pred EecCcCHHHHHHHHHHHhhh
Q 002241 458 VFIQPSVSRVVSRLKHICNN 477 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~ 477 (948)
+|+.|..++..++|...+.+
T Consensus 511 eFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 511 EFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred ecCCCChHHHHHHHHHHHHH
Confidence 99999999999999877765
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.72 E-value=1e-07 Score=119.94 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=100.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHH-----------HHHhhhcccccCCCcEEEec
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKIL-----------DVVQMNSVMADSRPKCLVID 378 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~-----------~~~~~~sv~~~~kp~iLIID 378 (948)
++||+||+|+|||++|++||+.+ +..++.+++++..........+. ..+. ..+ ......|||||
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~-~~v-~~~p~~vLllD 677 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLT-EAV-RRRPYSVILLD 677 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHH-HHH-HhCCCCeEEEe
Confidence 68999999999999999999986 45688888876533222211110 0000 001 12345899999
Q ss_pred CcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch-----------hh
Q 002241 379 EIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP-----------AL 447 (948)
Q Consensus 379 EID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p-----------~L 447 (948)
||+.+. ...++.|+.+++...... .++......+..|||+||-.... .+
T Consensus 678 Eieka~---~~v~~~Ll~ile~g~l~d-----------------~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~ 737 (857)
T PRK10865 678 EVEKAH---PDVFNILLQVLDDGRLTD-----------------GQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHM 737 (857)
T ss_pred ehhhCC---HHHHHHHHHHHhhCceec-----------------CCceEEeecccEEEEeCCcchHHHHHhccccchHHH
Confidence 999874 467888999887543210 11111223345678888852110 00
Q ss_pred h-------------hhc-cceEEEEecCcCHHHHHHHHHHHhhh-------cC--CCCCHHHHHHHHHHc
Q 002241 448 R-------------SLR-QIAKVHVFIQPSVSRVVSRLKHICNN-------ES--MKTSSIALTTLAEYT 494 (948)
Q Consensus 448 r-------------~Lr-~~~~iI~F~~p~~~~l~~~L~~I~~~-------Eg--i~id~~~L~~L~e~s 494 (948)
. .|. ++..++.|.+++.+.+..++...+.. .| +.++++++..|++..
T Consensus 738 ~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 738 KELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENG 807 (857)
T ss_pred HHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcC
Confidence 0 122 34488999999999888877655433 23 467999999999863
No 173
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.72 E-value=1.9e-07 Score=102.54 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=51.8
Q ss_pred hhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH-ccCCHHHHHHHHH
Q 002241 448 RSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY-TECDIRSCLNTLQ 506 (948)
Q Consensus 448 r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~-s~GDIR~aIn~LQ 506 (948)
.-|..+..+|.-.+.+.+++..+++.-|..|++.+++++++.|+.. ..-.+|.|++.|.
T Consensus 347 ~DlLDRllII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~ 406 (450)
T COG1224 347 LDLLDRLLIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLT 406 (450)
T ss_pred HhhhhheeEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhcc
Confidence 3456678888989999999999999999999999999999999986 3568999998876
No 174
>PRK08181 transposase; Validated
Probab=98.72 E-value=6.9e-08 Score=105.70 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=57.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhc----ccccCCCcEEEecCcccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNS----VMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~s----v~~~~kp~iLIIDEID~l 383 (948)
...++|+||||||||+||.++|+++ |+.|+.+++.+ +...+..+..... +..-.++.+|||||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~------L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD------LVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH------HHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 4679999999999999999999864 88999888754 2223322211111 011246789999999876
Q ss_pred cCCChhHHHHHHHHHHh
Q 002241 384 LGDGKGAVEVILKMVSA 400 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~ 400 (948)
... ......|+++++.
T Consensus 180 ~~~-~~~~~~Lf~lin~ 195 (269)
T PRK08181 180 TKD-QAETSVLFELISA 195 (269)
T ss_pred cCC-HHHHHHHHHHHHH
Confidence 543 4456788888874
No 175
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3e-08 Score=112.96 Aligned_cols=183 Identities=22% Similarity=0.250 Sum_probs=111.3
Q ss_pred ccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-CcceecCCCCCChH------HHHHHHHHHHhhhccc-ccCCCcEE
Q 002241 304 RSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY-HVVEVNASDDRSSS------TIENKILDVVQMNSVM-ADSRPKCL 375 (948)
Q Consensus 304 ~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~-~viEiNaSd~rs~~------~~~~~I~~~~~~~sv~-~~~kp~iL 375 (948)
...|.+|-|.+|||||||||||.+|+-|.+-++. +.-.+|.....++. .++..+.++-+..... ..+.-.||
T Consensus 249 e~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHII 328 (744)
T KOG0741|consen 249 EQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHII 328 (744)
T ss_pred HHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEE
Confidence 3468899999999999999999999999999875 45556766554442 2333333333322222 34567899
Q ss_pred EecCcccccC------CChh----HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec--CCC
Q 002241 376 VIDEIDGALG------DGKG----AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN--DLY 443 (948)
Q Consensus 376 IIDEID~l~~------~~~~----~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN--Dl~ 443 (948)
|+||||.+.. ++.| .++.|+.-+.. +. ..-+.-+|-.+| |+.
T Consensus 329 IFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG----------------Ve----------qLNNILVIGMTNR~DlI 382 (744)
T KOG0741|consen 329 IFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG----------------VE----------QLNNILVIGMTNRKDLI 382 (744)
T ss_pred EehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc----------------HH----------hhhcEEEEeccCchhhH
Confidence 9999998853 2223 33444443321 00 112344566666 444
Q ss_pred chhhhhhccceEEEEecCcCHHHHHHHHHHHhhh---cCCCCCHHHHHHHHHH----ccCCHHHHHHHHHHHHhcC
Q 002241 444 APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN---ESMKTSSIALTTLAEY----TECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 444 ~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~---Egi~id~~~L~~L~e~----s~GDIR~aIn~LQ~~~~~~ 512 (948)
+.+|-+..++--.+.+..|+..-.+++|+-...+ .++--++-.+..|+.. ++..|-..+...|-.+..+
T Consensus 383 DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR 458 (744)
T KOG0741|consen 383 DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNR 458 (744)
T ss_pred HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHh
Confidence 5454333345556677889988888877644432 2222233445556654 4667888888888776543
No 176
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.69 E-value=7.5e-08 Score=109.85 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=33.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~ 347 (948)
+++||+||||||||++|+.||+.++.+++.++++..
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 689999999999999999999999999999998743
No 177
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.68 E-value=7.9e-08 Score=109.64 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCcEEEecCcccccCC---------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC
Q 002241 371 RPKCLVIDEIDGALGD---------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND 441 (948)
Q Consensus 371 kp~iLIIDEID~l~~~---------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND 441 (948)
...||+|||||.+... +.|.++.||.+++....+... + ..-..=|.|||--
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-----------------~---~v~T~~ILFI~~G 306 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-----------------G---MVKTDHILFIAAG 306 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-----------------e---eEECCceeEEecC
Confidence 4679999999999642 357788999999864432211 0 0111235666654
Q ss_pred CCch----hh--hhhccceEEEEecCcCHHHHHHHH-----------HHHhhhcCC--CCCHHHHHHHHHH
Q 002241 442 LYAP----AL--RSLRQIAKVHVFIQPSVSRVVSRL-----------KHICNNESM--KTSSIALTTLAEY 493 (948)
Q Consensus 442 l~~p----~L--r~Lr~~~~iI~F~~p~~~~l~~~L-----------~~I~~~Egi--~id~~~L~~L~e~ 493 (948)
-++. .| .-..++-.++.+.+++.+.+..+| +..+..+|+ ..+++++..||+.
T Consensus 307 AF~~~kp~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~ 377 (441)
T TIGR00390 307 AFQLAKPSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAEL 377 (441)
T ss_pred CcCCCChhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHH
Confidence 3321 11 113456677788888888888877 234566776 4578999999886
No 178
>PHA02244 ATPase-like protein
Probab=98.65 E-value=3.7e-07 Score=102.90 Aligned_cols=131 Identities=20% Similarity=0.092 Sum_probs=76.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHH--HHhhhcc-cccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILD--VVQMNSV-MADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~--~~~~~sv-~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..+||+||||||||++|+++|+.+|..++.+|.... ...+...+.. .+....+ .......+||||||+.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d--~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p--- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMD--EFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP--- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChH--HHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH---
Confidence 579999999999999999999999999999985311 0000000000 0000000 0123568999999998754
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC-------C---chhhhhhccceEEEE
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL-------Y---APALRSLRQIAKVHV 458 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl-------~---~p~Lr~Lr~~~~iI~ 458 (948)
.....|..++....... .. +......+..+|+++|.. | ...-..++++...|.
T Consensus 195 ~vq~~L~~lLd~r~l~l---~g--------------~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~ 257 (383)
T PHA02244 195 EALIIINSAIANKFFDF---AD--------------ERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIE 257 (383)
T ss_pred HHHHHHHHHhccCeEEe---cC--------------cEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEee
Confidence 44555666654321100 00 001123457799999973 2 112244666777899
Q ss_pred ecCcCH
Q 002241 459 FIQPSV 464 (948)
Q Consensus 459 F~~p~~ 464 (948)
|..|+.
T Consensus 258 ~dyp~~ 263 (383)
T PHA02244 258 FDYDEK 263 (383)
T ss_pred CCCCcH
Confidence 988763
No 179
>PRK06526 transposase; Provisional
Probab=98.64 E-value=7.7e-08 Score=104.65 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=54.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhh----cccccCCCcEEEecCcccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMN----SVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~----sv~~~~kp~iLIIDEID~l 383 (948)
+..++|+||||+|||+||.+|+.++ |+.|+.+++++ +...+....... .+..-.++.||||||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~------l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ------WVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH------HHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4689999999999999999999874 88888876653 222222111100 0111245789999999876
Q ss_pred cCCChhHHHHHHHHHHh
Q 002241 384 LGDGKGAVEVILKMVSA 400 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~ 400 (948)
... ....+.|+.+++.
T Consensus 172 ~~~-~~~~~~L~~li~~ 187 (254)
T PRK06526 172 PFE-PEAANLFFQLVSS 187 (254)
T ss_pred CCC-HHHHHHHHHHHHH
Confidence 543 3444667777764
No 180
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.63 E-value=3.4e-08 Score=101.78 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=51.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhc----ccccCCCcEEEecCcccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNS----VMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~s----v~~~~kp~iLIIDEID~l 383 (948)
...|+|+||||+|||+||.++|+++ |+.|+.++.++. ...+........ +..-.+..+|||||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L------~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL------LDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH------HHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce------eccccccccccchhhhcCccccccEeccccccee
Confidence 4789999999999999999999875 899999987642 222221111000 001235689999999643
Q ss_pred cCCChhHHHHHHHHHHh
Q 002241 384 LGDGKGAVEVILKMVSA 400 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~ 400 (948)
. ......+.|+++++.
T Consensus 121 ~-~~~~~~~~l~~ii~~ 136 (178)
T PF01695_consen 121 P-LSEWEAELLFEIIDE 136 (178)
T ss_dssp ----HHHHHCTHHHHHH
T ss_pred e-ecccccccchhhhhH
Confidence 3 234556677787764
No 181
>PRK12377 putative replication protein; Provisional
Probab=98.63 E-value=2.1e-07 Score=100.71 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=57.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhh-----cccccCCCcEEEecCcccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMN-----SVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~-----sv~~~~kp~iLIIDEID~l 383 (948)
..++|+||||||||+||.++|+++ |+.|+.++..+. ...+....... .+..-.+..|||||||...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l------~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDV------MSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHH------HHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 689999999999999999999986 788888877542 22222221110 1112356789999999755
Q ss_pred cCCChhHHHHHHHHHHhh
Q 002241 384 LGDGKGAVEVILKMVSAE 401 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~ 401 (948)
.. .......|..+++..
T Consensus 176 ~~-s~~~~~~l~~ii~~R 192 (248)
T PRK12377 176 RE-TKNEQVVLNQIIDRR 192 (248)
T ss_pred CC-CHHHHHHHHHHHHHH
Confidence 33 334667788888753
No 182
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.59 E-value=2.6e-07 Score=104.41 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=64.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHh---h--hccc-ccCCC---cEEEecCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQ---M--NSVM-ADSRP---KCLVIDEID 381 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~---~--~sv~-~~~kp---~iLIIDEID 381 (948)
.+++||-||||||||++|+.+|+.+|.+++.|++.++....++.....-... . .... +.--. .++++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 3689999999999999999999999999999999987766544332221111 1 1110 11112 499999999
Q ss_pred cccCCChhHHHHHHHHHHhhhc
Q 002241 382 GALGDGKGAVEVILKMVSAERK 403 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~~~~ 403 (948)
.+.. .+.++|+..++..+.
T Consensus 123 ra~p---~~q~aLl~~l~e~~v 141 (329)
T COG0714 123 RAPP---EVQNALLEALEERQV 141 (329)
T ss_pred cCCH---HHHHHHHHHHhCcEE
Confidence 8854 688889999886443
No 183
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.58 E-value=9.8e-07 Score=99.43 Aligned_cols=102 Identities=13% Similarity=-0.029 Sum_probs=58.7
Q ss_pred CCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC------c
Q 002241 371 RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY------A 444 (948)
Q Consensus 371 kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~------~ 444 (948)
+..|+-|+|++.+ ...++..|+..++....... .... ......-||.++|+.. .
T Consensus 236 NrGi~~f~Ei~K~---~~~~l~~LL~~~qE~~v~~~---------------~~~~--~~~~d~liia~sNe~e~~~~~~~ 295 (361)
T smart00763 236 NRGILEFVEMFKA---DIKFLHPLLTATQEGNIKGT---------------GGFA--MIPIDGLIIAHSNESEWQRFKSN 295 (361)
T ss_pred cCceEEEeehhcC---CHHHHHHHhhhhhcceEecC---------------Cccc--ccccceEEEEeCCHHHHhhhhcc
Confidence 4567888888776 33566777777664322100 0000 1122334666777652 3
Q ss_pred hhhhhhccceEEEEecCc-CHHHHHHHHHHHhhhc---CCCCCHHHHHHHHH
Q 002241 445 PALRSLRQIAKVHVFIQP-SVSRVVSRLKHICNNE---SMKTSSIALTTLAE 492 (948)
Q Consensus 445 p~Lr~Lr~~~~iI~F~~p-~~~~l~~~L~~I~~~E---gi~id~~~L~~L~e 492 (948)
....+++++|..|.++-+ +.+.=+++.+..+... ++.+.+.++..++.
T Consensus 296 k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 296 KKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred ccchhhhhceEEEeCCCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 456788889998888766 4455556666666543 45566666665554
No 184
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-07 Score=102.71 Aligned_cols=94 Identities=29% Similarity=0.382 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC----hHHHHHHHHHHHhhhccc-ccCCCcEEEecCcccccC-
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS----SSTIENKILDVVQMNSVM-ADSRPKCLVIDEIDGALG- 385 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs----~~~~~~~I~~~~~~~sv~-~~~kp~iLIIDEID~l~~- 385 (948)
..+||.||+|+|||.||..||+.++..+.--+|....- ++.+++.+...+|..... ......||.|||||.+..
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 57999999999999999999999999998888876543 467777777777754432 234678999999999853
Q ss_pred ----------CChhHHHHHHHHHHhhhccc
Q 002241 386 ----------DGKGAVEVILKMVSAERKSN 405 (948)
Q Consensus 386 ----------~~~~~~~~Ll~li~~~~~~~ 405 (948)
++.|.+.+|+++++....+.
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGTvasV 207 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGTVASV 207 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCceecc
Confidence 24688999999998765443
No 185
>PRK08116 hypothetical protein; Validated
Probab=98.57 E-value=3.2e-07 Score=100.72 Aligned_cols=82 Identities=27% Similarity=0.314 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhh-------hcccccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQM-------NSVMADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~-------~sv~~~~kp~iLIIDEID 381 (948)
..++|+|++|+|||+||.++|+++ |+.++.+++++. ...+...+.. ..+..-....+|||||+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l------l~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg 188 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL------LNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLG 188 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH------HHHHHHHHhccccccHHHHHHHhcCCCEEEEeccc
Confidence 579999999999999999999985 888998887542 2223222110 000012346799999995
Q ss_pred cccCCChhHHHHHHHHHHh
Q 002241 382 GALGDGKGAVEVILKMVSA 400 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~ 400 (948)
... ........|+.+++.
T Consensus 189 ~e~-~t~~~~~~l~~iin~ 206 (268)
T PRK08116 189 AER-DTEWAREKVYNIIDS 206 (268)
T ss_pred CCC-CCHHHHHHHHHHHHH
Confidence 432 223456678888775
No 186
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=8.4e-08 Score=92.73 Aligned_cols=86 Identities=30% Similarity=0.468 Sum_probs=59.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCCcceecCCCCCChHHHHHHHHHHHhhhccc---------------
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC--------GYHVVEVNASDDRSSSTIENKILDVVQMNSVM--------------- 367 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel--------G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~--------------- 367 (948)
+++++|+||+|+|||+++..+++++ ...++.+++....+...+...|.+.+......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4789999999999999999999987 78889999887777666666666655432111
Q ss_pred ccCCCcEEEecCcccccCCChhHHHHHHHHH
Q 002241 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMV 398 (948)
Q Consensus 368 ~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li 398 (948)
...+..+|||||+|.+. ....++.|..+.
T Consensus 84 ~~~~~~~lviDe~~~l~--~~~~l~~l~~l~ 112 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF--SDEFLEFLRSLL 112 (131)
T ss_dssp HHCTEEEEEEETTHHHH--THHHHHHHHHHT
T ss_pred HhcCCeEEEEeChHhcC--CHHHHHHHHHHH
Confidence 11223699999999985 345555555444
No 187
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=9e-07 Score=97.46 Aligned_cols=140 Identities=15% Similarity=0.065 Sum_probs=97.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC----------------CcceecCCCC---CChHHHHHHHHHHHhhhcccccC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGY----------------HVVEVNASDD---RSSSTIENKILDVVQMNSVMADS 370 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~----------------~viEiNaSd~---rs~~~~~~~I~~~~~~~sv~~~~ 370 (948)
....+||+||.|+||+++|..+|+.+-+ ++..+.+... -+.+.+++.+..+. ..+ ..+
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~-~~p--~e~ 94 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIW-IHP--YES 94 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHh-hCc--cCC
Confidence 3468999999999999999999987532 2333322211 23444544333322 222 246
Q ss_pred CCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhh
Q 002241 371 RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSL 450 (948)
Q Consensus 371 kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~L 450 (948)
..+|+|||++|.+.. .+.++|+++++.... +.-+|++|+.... .+..+
T Consensus 95 ~~kv~ii~~ad~mt~---~AaNaLLK~LEEPp~----------------------------~~~fiL~~~~~~~-ll~TI 142 (290)
T PRK05917 95 PYKIYIIHEADRMTL---DAISAFLKVLEDPPQ----------------------------HGVIILTSAKPQR-LPPTI 142 (290)
T ss_pred CceEEEEechhhcCH---HHHHHHHHHhhcCCC----------------------------CeEEEEEeCChhh-CcHHH
Confidence 789999999999954 788999999986432 2347777777553 45678
Q ss_pred ccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHH
Q 002241 451 RQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIR 499 (948)
Q Consensus 451 r~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR 499 (948)
+++|..+.|.++ +...++++.+..++..++|++.
T Consensus 143 ~SRcq~~~~~~~---------------~~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 143 RSRSLSIHIPME---------------EKTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred HhcceEEEccch---------------hccCCCHHHHHHHHHHhCCChh
Confidence 899999999765 2224688888889999999886
No 188
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.5e-07 Score=106.94 Aligned_cols=164 Identities=23% Similarity=0.243 Sum_probs=107.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCC--ChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDR--SSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~r--s~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~ 387 (948)
....+||+|+|||||||+++++|+++|.+++|+.+...- +....+.++...+.... ...|.||++-.+|.+..+.
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~---~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRAR---RCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHh---hcCceEEEEeccceeeecC
Confidence 446899999999999999999999999999999987543 33445556666665544 3579999999999876432
Q ss_pred h-hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEE--EecCCCc--hhhhhhccceEEEEecCc
Q 002241 388 K-GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVIC--ICNDLYA--PALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 388 ~-~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~--icNDl~~--p~Lr~Lr~~~~iI~F~~p 462 (948)
. +..-.+++.++....+. .. .....++|+ +|+...+ +.++. -+-..|.+..+
T Consensus 507 dgged~rl~~~i~~~ls~e-----------~~----------~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~l 563 (953)
T KOG0736|consen 507 DGGEDARLLKVIRHLLSNE-----------DF----------KFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPAL 563 (953)
T ss_pred CCchhHHHHHHHHHHHhcc-----------cc----------cCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCC
Confidence 2 33333444443221100 00 011233444 4444332 22222 25567888999
Q ss_pred CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHH
Q 002241 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRS 500 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~ 500 (948)
+.+++.++|+.+...+.+. ++..++.++..+.|=.+.
T Consensus 564 se~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~ 600 (953)
T KOG0736|consen 564 SEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSGFSFG 600 (953)
T ss_pred CHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCCCCHH
Confidence 9999999999998776653 456677888887765444
No 189
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4e-07 Score=110.73 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=107.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CCcceecCCCCCChHHHHHHHHHHHh----------hhcccccCCCcEEEecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCG---YHVVEVNASDDRSSSTIENKILDVVQ----------MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG---~~viEiNaSd~rs~~~~~~~I~~~~~----------~~sv~~~~kp~iLIIDE 379 (948)
..||.||+|+|||-||++||..+. -.++.+|.|....+..+...|..--. +..+ ....++||++||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaV-Rr~PySViLlDE 601 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAV-RRKPYSVILLDE 601 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhh-hcCCCeEEEech
Confidence 789999999999999999999986 78999999876655544443322110 0111 134478999999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc---------------
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA--------------- 444 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~--------------- 444 (948)
|+.+.+ ..++.|+.++..+.... .+|....-.+.-||||+|--..
T Consensus 602 IEKAHp---dV~nilLQVlDdGrLTD-----------------~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~ 661 (786)
T COG0542 602 IEKAHP---DVFNLLLQVLDDGRLTD-----------------GQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKE 661 (786)
T ss_pred hhhcCH---HHHHHHHHHhcCCeeec-----------------CCCCEEecceeEEEEecccchHHHHhhccccccchhh
Confidence 999854 68899999988655422 2222233446678888883110
Q ss_pred -------hhhh------hhccceEEEEecCcCHHHHHHHHHHH-------hhhcCC--CCCHHHHHHHHHHc
Q 002241 445 -------PALR------SLRQIAKVHVFIQPSVSRVVSRLKHI-------CNNESM--KTSSIALTTLAEYT 494 (948)
Q Consensus 445 -------p~Lr------~Lr~~~~iI~F~~p~~~~l~~~L~~I-------~~~Egi--~id~~~L~~L~e~s 494 (948)
..++ -|.++..+|.|++.+.+.+.+++... +...++ .+++++...|++.+
T Consensus 662 ~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 662 ALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred hHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhc
Confidence 0111 13456779999999888777665432 223344 67899999999875
No 190
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.53 E-value=8.1e-07 Score=106.91 Aligned_cols=178 Identities=14% Similarity=0.140 Sum_probs=105.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHH----HHhh-----hcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILD----VVQM-----NSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~----~~~~-----~sv~~~~kp~iLIIDE 379 (948)
..+||+|++|||||++|++|.... +..++.+|++.... ..+...+-. ++.. ...........|+|||
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~lde 298 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDE 298 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEec
Confidence 469999999999999999999874 56899999987532 222222100 0000 0001123467899999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh--h----ccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS--L----RQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~--L----r~~ 453 (948)
|+.+.. ..+..|+.++......... +.........||+++|......+.. + -.+
T Consensus 299 i~~L~~---~~Q~~Ll~~l~~~~~~~~~-----------------~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~r 358 (534)
T TIGR01817 299 IGEISP---AFQAKLLRVLQEGEFERVG-----------------GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYR 358 (534)
T ss_pred hhhCCH---HHHHHHHHHHhcCcEEECC-----------------CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHH
Confidence 999854 5777888888653211000 0001123456888877533222211 1 111
Q ss_pred --eEEEEecCcC--HHHHHHH----HHHHhhhcC--CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHh
Q 002241 454 --AKVHVFIQPS--VSRVVSR----LKHICNNES--MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDK 510 (948)
Q Consensus 454 --~~iI~F~~p~--~~~l~~~----L~~I~~~Eg--i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~ 510 (948)
...|.+++.. .+.+..+ |..++.+.+ +.++++++..|..+. .|++|..-|.++.++.
T Consensus 359 l~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 359 INVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred hcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 2234443332 1223222 333443333 578999999999985 8999999999988764
No 191
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=5.2e-07 Score=87.74 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=75.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG--YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG--~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
.++++|+||.||||||+++-+|+++. .+++.+|..+.+........+.+.+... . .....+||||||+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~iDEiq~~~---- 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL-I--KPGKKYIFIDEIQYLP---- 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh-h--ccCCcEEEEehhhhhc----
Confidence 37999999999999999999999876 8999999987665432211122222211 1 1367899999999873
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch---hhhhhccceEEEEecCcCHH
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP---ALRSLRQIAKVHVFIQPSVS 465 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p---~Lr~Lr~~~~iI~F~~p~~~ 465 (948)
.....+-.+++.. .+..||+++...... ....+..+...+++.+.+..
T Consensus 75 ~~~~~lk~l~d~~-----------------------------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~ 125 (128)
T PF13173_consen 75 DWEDALKFLVDNG-----------------------------PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFR 125 (128)
T ss_pred cHHHHHHHHHHhc-----------------------------cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHH
Confidence 2333333333211 124577776653321 22345556677777777766
Q ss_pred HH
Q 002241 466 RV 467 (948)
Q Consensus 466 ~l 467 (948)
+.
T Consensus 126 E~ 127 (128)
T PF13173_consen 126 EF 127 (128)
T ss_pred Hh
Confidence 54
No 192
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.50 E-value=5.2e-07 Score=100.73 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=48.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhc----ccccCCCcEEEecCccc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNS----VMADSRPKCLVIDEIDG 382 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~s----v~~~~kp~iLIIDEID~ 382 (948)
..+.|+|+||+|+|||+||.++|+++ |+.+..++.++ +...+..+....+ +..-.+..|||||||..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~------l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE------FIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHH------HHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCC
Confidence 35899999999999999999999997 88888887753 2233333322111 11235678999999975
Q ss_pred c
Q 002241 383 A 383 (948)
Q Consensus 383 l 383 (948)
-
T Consensus 229 e 229 (306)
T PRK08939 229 E 229 (306)
T ss_pred c
Confidence 4
No 193
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=2e-06 Score=95.53 Aligned_cols=151 Identities=12% Similarity=0.110 Sum_probs=105.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-------------CcceecC-CCCCChHHHHHHHHHHHhhhcccc--cCCCcE
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY-------------HVVEVNA-SDDRSSSTIENKILDVVQMNSVMA--DSRPKC 374 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~-------------~viEiNa-Sd~rs~~~~~~~I~~~~~~~sv~~--~~kp~i 374 (948)
..+.||+|+.|.||+++|+.+|+.+-+ +++.++. ...-+. +.|++..+.-+... .+..+|
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~v----d~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSK----SEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCH----HHHHHHHHHhccCCcccCCceE
Confidence 478999999999999999999998622 2233321 111222 34444444433332 258899
Q ss_pred EEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccce
Q 002241 375 LVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIA 454 (948)
Q Consensus 375 LIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~ 454 (948)
+|||++|.+. ..+.++|++.++.... ..-+|++|++. ...+..++++|
T Consensus 94 vII~~~e~m~---~~a~NaLLK~LEEPp~----------------------------~t~~il~~~~~-~kll~TI~SRc 141 (299)
T PRK07132 94 LIIKNIEKTS---NSLLNALLKTIEEPPK----------------------------DTYFLLTTKNI-NKVLPTIVSRC 141 (299)
T ss_pred EEEecccccC---HHHHHHHHHHhhCCCC----------------------------CeEEEEEeCCh-HhChHHHHhCe
Confidence 9999999884 4688899999986332 24478888865 44556789999
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNT 504 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~ 504 (948)
.++.|.+++.+++...|..- + ++++....++..++| +..|+..
T Consensus 142 ~~~~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~~-~~~a~~~ 184 (299)
T PRK07132 142 QVFNVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFSN-FEQAEKY 184 (299)
T ss_pred EEEECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcCC-HHHHHHH
Confidence 99999999999998888642 3 566666666766664 8887765
No 194
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.50 E-value=8.1e-07 Score=100.04 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=56.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhh------cccccCCCcEEEecCccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMN------SVMADSRPKCLVIDEIDG 382 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~------sv~~~~kp~iLIIDEID~ 382 (948)
..|+|+||+|+|||+||+++|+++ |+.|+.+++.+. ...+....... .+..-....+|||||+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l------~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~ 257 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL------IEILREIRFNNDKELEEVYDLLINCDLLIIDDLGT 257 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH------HHHHHHHHhccchhHHHHHHHhccCCEEEEeccCC
Confidence 789999999999999999999986 899999988653 12221110000 011123568999999976
Q ss_pred ccCCChhHHHHHHHHHHhh
Q 002241 383 ALGDGKGAVEVILKMVSAE 401 (948)
Q Consensus 383 l~~~~~~~~~~Ll~li~~~ 401 (948)
... .......|+.+++..
T Consensus 258 e~~-t~~~~~~Lf~iin~R 275 (329)
T PRK06835 258 EKI-TEFSKSELFNLINKR 275 (329)
T ss_pred CCC-CHHHHHHHHHHHHHH
Confidence 543 334557788888753
No 195
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.45 E-value=1.3e-06 Score=92.20 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=92.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHH---------HHHHHhhh--------------
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENK---------ILDVVQMN-------------- 364 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~---------I~~~~~~~-------------- 364 (948)
..+++|+||.|+|||+|++.+++.+ ++.++.++.........+... +...+...
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 3789999999999999999999987 345555555443332222111 11111100
Q ss_pred ------------cccccCCCcEEEecCccccc-C--CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccc
Q 002241 365 ------------SVMADSRPKCLVIDEIDGAL-G--DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKA 429 (948)
Q Consensus 365 ------------sv~~~~kp~iLIIDEID~l~-~--~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~ 429 (948)
.+.......||||||++.+. . ........|..++.....
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------------- 153 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-------------------------- 153 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----------------------------
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc--------------------------
Confidence 00012334899999999998 2 335666777777754111
Q ss_pred cCCCc-EEEEecCCCc----hhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCC--CHHHHHHHHHHccCCHHHH
Q 002241 430 SLLRP-VICICNDLYA----PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKT--SSIALTTLAEYTECDIRSC 501 (948)
Q Consensus 430 ~~~rP-II~icNDl~~----p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~i--d~~~L~~L~e~s~GDIR~a 501 (948)
..+.. |||.++.... ....++-.++..+.+.+.+.++..+.+...+... +.+ ++..+..|...++|--+-.
T Consensus 154 ~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 154 QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp -TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred cCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 01122 3333332111 1112344455668999999999999999877665 654 9999999999999976643
No 196
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.8e-07 Score=99.85 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=92.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC----hHHHHHHHHHHHhhhccc-ccCCCcEEEecCcccccC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS----SSTIENKILDVVQMNSVM-ADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs----~~~~~~~I~~~~~~~sv~-~~~kp~iLIIDEID~l~~ 385 (948)
+..+||.||+|+|||.||..||+-++..+..-+|....- +++++..|...++..... ...+..||+|||||.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 357999999999999999999999999999888876543 355666666666543322 235678999999999862
Q ss_pred -----------CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch--hhhhhcc
Q 002241 386 -----------DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP--ALRSLRQ 452 (948)
Q Consensus 386 -----------~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p--~Lr~Lr~ 452 (948)
.+.|.+..||++++....+...... .+..++.....-..-|.|||.-.+.. .+-..|.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~---------~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~ 376 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGS---------RRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRL 376 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCC---------CCCCCCCeEEEeccceEEEecccccchHHHHHHhh
Confidence 2468899999999865543311111 11222332333334467777655431 1111222
Q ss_pred ceEEEEecCcCH
Q 002241 453 IAKVHVFIQPSV 464 (948)
Q Consensus 453 ~~~iI~F~~p~~ 464 (948)
-...+-|..|+.
T Consensus 377 ~d~slGFg~~s~ 388 (564)
T KOG0745|consen 377 DDKSLGFGAPSS 388 (564)
T ss_pred cchhcccCCCCC
Confidence 334455666644
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=98.42 E-value=8.1e-07 Score=97.08 Aligned_cols=86 Identities=23% Similarity=0.312 Sum_probs=54.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCChHH---HHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRSSST---IENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs~~~---~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
...+++|+||||+|||+||.++|.+ .|+.|..+++.+....-. ....+...++. ....+.+|||||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~----~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQR----GVMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHH----HhcCCCEEEEcccccC
Confidence 3468999999999999999999766 488998887654221100 00001111111 0246789999999765
Q ss_pred cCCChhHHHHHHHHHHh
Q 002241 384 LGDGKGAVEVILKMVSA 400 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~ 400 (948)
..+ ....+.|+.+++.
T Consensus 177 ~~~-~~~~~~lf~li~~ 192 (259)
T PRK09183 177 PFS-QEEANLFFQVIAK 192 (259)
T ss_pred CCC-hHHHHHHHHHHHH
Confidence 433 3445678888764
No 198
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=4.2e-06 Score=90.48 Aligned_cols=155 Identities=14% Similarity=0.030 Sum_probs=100.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC----------------------CcceecCCC-CCChHHHHHHHHHHHhhhccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY----------------------HVVEVNASD-DRSSSTIENKILDVVQMNSVM 367 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~----------------------~viEiNaSd-~rs~~~~~~~I~~~~~~~sv~ 367 (948)
+..+||+||.|+||.++|..+|+.+-+ ++..+.... .-..+.+++.+..+. ..+.
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~-~~s~- 84 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLN-RPSV- 84 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHc-cCch-
Confidence 368999999999999999999987522 122221111 122333443332222 1111
Q ss_pred ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh
Q 002241 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL 447 (948)
Q Consensus 368 ~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L 447 (948)
..+..+|+||+++|.+.. .+.++|+++++.... +.-+|++|++... .+
T Consensus 85 e~~~~KV~II~~ae~m~~---~AaNaLLK~LEEPp~----------------------------~t~fiLit~~~~~-lL 132 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK---QSANSLLKLIEEPPK----------------------------NTYGIFTTRNENN-IL 132 (261)
T ss_pred hcCCCEEEEeccHhhhCH---HHHHHHHHhhcCCCC----------------------------CeEEEEEECChHh-Cc
Confidence 124689999999999954 788999999986432 2347788877654 66
Q ss_pred hhhccceEEEEecCc----------CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 448 RSLRQIAKVHVFIQP----------SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 448 r~Lr~~~~iI~F~~p----------~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
..+++||..+.|+++ ....+...|.. ..+ +++ .++-.++|++..++..++.+
T Consensus 133 pTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 133 NTILSRCVQYVVLSKEKKVPFKVESNDRYFQYILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred hHhhhheeeeecCChhhhcccccccChHHHHHHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence 778999999999877 33333433321 222 333 56667899999999988865
No 199
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.39 E-value=1.3e-06 Score=95.19 Aligned_cols=84 Identities=25% Similarity=0.391 Sum_probs=57.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhc----ccc-cCCCcEEEecCcc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNS----VMA-DSRPKCLVIDEID 381 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~s----v~~-~~kp~iLIIDEID 381 (948)
.++.++|+||||+|||+||.++|+++ |..|+.++.++. ...+..+..... +.. -.+..+|||||+-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el------~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG 177 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL------LSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIG 177 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH------HHHHHHHHhcCchHHHHHHHhhcCCEEEEeccc
Confidence 56899999999999999999999985 889999988753 333333333211 111 3567899999997
Q ss_pred cccCCChhHHHHHHHHHHh
Q 002241 382 GALGDGKGAVEVILKMVSA 400 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~ 400 (948)
.... .......++.+|..
T Consensus 178 ~~~~-~~~~~~~~~q~I~~ 195 (254)
T COG1484 178 YEPF-SQEEADLLFQLISR 195 (254)
T ss_pred CccC-CHHHHHHHHHHHHH
Confidence 6543 23344556666654
No 200
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.38 E-value=1.5e-07 Score=90.89 Aligned_cols=86 Identities=27% Similarity=0.299 Sum_probs=50.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHh--hhcc--c-ccCCCcEEEecCcccccCCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQ--MNSV--M-ADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~--~~sv--~-~~~kp~iLIIDEID~l~~~~ 387 (948)
++||.|+||+||||+|+++|+.+|..+..|..+.+....++...- ... .... . +.--.+|+++|||..++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~--v~~~~~~~f~~~~GPif~~ill~DEiNrapp-- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP--VYDQETGEFEFRPGPIFTNILLADEINRAPP-- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE--EEETTTTEEEEEE-TT-SSEEEEETGGGS-H--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee--eeccCCCeeEeecChhhhceeeecccccCCH--
Confidence 589999999999999999999999999988876554443332110 000 0000 0 111247999999998754
Q ss_pred hhHHHHHHHHHHhhhc
Q 002241 388 KGAVEVILKMVSAERK 403 (948)
Q Consensus 388 ~~~~~~Ll~li~~~~~ 403 (948)
..+.+|++.+.+.+.
T Consensus 77 -ktQsAlLeam~Er~V 91 (131)
T PF07726_consen 77 -KTQSALLEAMEERQV 91 (131)
T ss_dssp -HHHHHHHHHHHHSEE
T ss_pred -HHHHHHHHHHHcCeE
Confidence 577889999986543
No 201
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.38 E-value=3.2e-06 Score=95.52 Aligned_cols=179 Identities=15% Similarity=0.177 Sum_probs=106.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHH----HHh-----hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILD----VVQ-----MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~----~~~-----~~sv~~~~kp~iLIIDE 379 (948)
..+||+|++||||+++|++|-... +..++.+|++.... ..+...+-. ++. ............|+|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEEEeCC
Confidence 579999999999999999987654 46899999986432 222222210 000 00011233568999999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch-----hh-hhhccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP-----AL-RSLRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p-----~L-r~Lr~~ 453 (948)
|+.+.. ..+..|+.++........ . +.........||+++|..... .+ ..|-.+
T Consensus 102 i~~L~~---~~Q~~Ll~~l~~~~~~~~---g--------------~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~r 161 (329)
T TIGR02974 102 LATASL---LVQEKLLRVIEYGEFERV---G--------------GSQTLQVDVRLVCATNADLPALAAEGRFRADLLDR 161 (329)
T ss_pred hHhCCH---HHHHHHHHHHHcCcEEec---C--------------CCceeccceEEEEechhhHHHHhhcCchHHHHHHH
Confidence 999854 667788888865321100 0 000123445688887743211 11 112222
Q ss_pred eEEEEecCcCHH----HHHH----HHHHHhhhcC----CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 AKVHVFIQPSVS----RVVS----RLKHICNNES----MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~~iI~F~~p~~~----~l~~----~L~~I~~~Eg----i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
...+.+.-|+.. .+.. .|..++.+.| ..++++++..|..+. .|++|..-|.++.++..
T Consensus 162 l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 162 LAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred hcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 222333333332 2222 2344555444 357999999999986 89999999999887654
No 202
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.36 E-value=2e-05 Score=87.59 Aligned_cols=200 Identities=12% Similarity=0.194 Sum_probs=136.4
Q ss_pred CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccC
Q 002241 336 GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKED 415 (948)
Q Consensus 336 G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~ 415 (948)
.++++.+++++.... .+.+.+.+.+++ +...||+|++++.+... ...+.|++++....
T Consensus 18 ~~~~~~~~~~e~~~~-----~l~~~~~~~slf--~~~kliii~~~~~~~~~--~~~~~L~~~l~~~~------------- 75 (302)
T TIGR01128 18 EFNVFRIDGEEFDWN-----QLLEEAQTLPLF--SERRLVELRNPEGKPGA--KGLKALEEYLANPP------------- 75 (302)
T ss_pred hheeeeeccCCCCHH-----HHHHHhhccCcc--cCCeEEEEECCCCCCCH--HHHHHHHHHHhcCC-------------
Confidence 356677776644332 255566666665 35689999999987532 34677888776421
Q ss_pred chhhhhhccccccccCCCcEEEEecCCCch-----hhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHH
Q 002241 416 QPEKISKKKGCKKASLLRPVICICNDLYAP-----ALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTL 490 (948)
Q Consensus 416 ~~~k~~~kk~~~~~~~~rPII~icNDl~~p-----~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L 490 (948)
....+|++++..... .+..+ ..|.++.|.+++..++..++..++.++|+.++++++..|
T Consensus 76 ---------------~~~~~i~~~~~~~~~~~~~k~~~~~-~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l 139 (302)
T TIGR01128 76 ---------------PDTLLLIEAPKLDKRKKLTKWLKAL-KNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLL 139 (302)
T ss_pred ---------------CCEEEEEecCCCCHhHHHHHHHHHh-cCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 124467777654421 12222 389999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhc--CccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHH
Q 002241 491 AEYTECDIRSCLNTLQFLDKK--KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLH 568 (948)
Q Consensus 491 ~e~s~GDIR~aIn~LQ~~~~~--~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (948)
++.++||++.+.|.|+-++.- ...++.+++.... ..+...++|++++.++..+. ...+..+.
T Consensus 140 ~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~--~~~~~~~if~l~dal~~~~~--------------~~a~~~l~ 203 (302)
T TIGR01128 140 AELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAV--SDSARFNVFDLTDALLEGKA--------------ARALRILK 203 (302)
T ss_pred HHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHH--hhhhcCCHHHHHHHHHCCCH--------------HHHHHHHH
Confidence 999999999999999877643 2346655665322 22344579999999987652 22344455
Q ss_pred HHHhccCChHHHHHHHHHHhh
Q 002241 569 SLISNRGDYDVIFDGIHENIL 589 (948)
Q Consensus 569 ~~i~s~gd~d~i~~~l~eNyl 589 (948)
.++....++-.++..+...+.
T Consensus 204 ~l~~~~~~~~~il~~l~~~~~ 224 (302)
T TIGR01128 204 GLLGEGEEPLILLALLQRQLR 224 (302)
T ss_pred HHHHCCCcHHHHHHHHHHHHH
Confidence 555555556666666665554
No 203
>PRK06921 hypothetical protein; Provisional
Probab=98.34 E-value=1.9e-06 Score=94.44 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=53.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCccc-ccC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDG-ALG 385 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~-l~~ 385 (948)
...++|+||||+|||+|++++|+++ |+.|+.+.+.+... .+...+... . ..+..-....+|||||++. +.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--~l~~~~~~~-~-~~~~~~~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--DLKDDFDLL-E-AKLNRMKKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--HHHHHHHHH-H-HHHHHhcCCCEEEEeccccccCC
Confidence 4789999999999999999999985 78888888754211 111111100 0 0111124578999999943 111
Q ss_pred C---ChhHHHHHHHHHHh
Q 002241 386 D---GKGAVEVILKMVSA 400 (948)
Q Consensus 386 ~---~~~~~~~Ll~li~~ 400 (948)
. .......|+.+++.
T Consensus 193 ~e~~t~~~~~~lf~iin~ 210 (266)
T PRK06921 193 KPRATEWQIEQMYSVLNY 210 (266)
T ss_pred CccCCHHHHHHHHHHHHH
Confidence 1 12234567787765
No 204
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.34 E-value=5e-06 Score=102.28 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=104.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHH-hh-----hcccccCCCcEEEecCccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVV-QM-----NSVMADSRPKCLVIDEIDG 382 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~-~~-----~sv~~~~kp~iLIIDEID~ 382 (948)
..+||+|++||||+++|++|-+.. +-.++.+|++..-. +.+...+-... .. ...+.......|+||||+.
T Consensus 349 ~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~-~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~ 427 (638)
T PRK11388 349 FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD-EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEY 427 (638)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh-HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhh
Confidence 469999999999999999998864 35899999986542 22222211100 00 0011123467899999999
Q ss_pred ccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh--hcc----ceEE
Q 002241 383 ALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS--LRQ----IAKV 456 (948)
Q Consensus 383 l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~--Lr~----~~~i 456 (948)
++. ..+..|+.+++........ +.........||+++|......... ++. +-..
T Consensus 428 l~~---~~Q~~Ll~~l~~~~~~~~~-----------------~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~ 487 (638)
T PRK11388 428 LSP---ELQSALLQVLKTGVITRLD-----------------SRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHA 487 (638)
T ss_pred CCH---HHHHHHHHHHhcCcEEeCC-----------------CCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhce
Confidence 854 5677888888643221000 0001123455888877533221111 111 1112
Q ss_pred EEecCcCHH----HHHH----HHHHHhhhcC--CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 457 HVFIQPSVS----RVVS----RLKHICNNES--MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 457 I~F~~p~~~----~l~~----~L~~I~~~Eg--i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
+.+.-|+.. .+.. .|..++.+.+ +.++++++..|..+. .|++|..-|.++.++..
T Consensus 488 ~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 488 FEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred eEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 333333332 2222 2333443322 568999999999987 89999999999987643
No 205
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.30 E-value=1.5e-05 Score=90.00 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.++||+||||+||||+|+++|+-+
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHC
Confidence 469999999999999999999987
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.2e-06 Score=104.47 Aligned_cols=173 Identities=18% Similarity=0.263 Sum_probs=114.8
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCCC----hHHHHHHHHHHHhhhcccccCC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDRS----SSTIENKILDVVQMNSVMADSR 371 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~rs----~~~~~~~I~~~~~~~sv~~~~k 371 (948)
..|..++.-+|.|+||+|||++|.-+|... +..++.++-+.... .+.|+++++..+..-. ...
T Consensus 186 L~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~---~~~ 262 (786)
T COG0542 186 LSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVE---KSK 262 (786)
T ss_pred HhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHh---cCC
Confidence 346667888999999999999999999864 45666666555433 3567777777665322 233
Q ss_pred CcEEEecCcccccCCChh---HH---HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch
Q 002241 372 PKCLVIDEIDGALGDGKG---AV---EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP 445 (948)
Q Consensus 372 p~iLIIDEID~l~~~~~~---~~---~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p 445 (948)
+.|||||||+.+.+.+.. ++ +.|--.+.. ...+.|-.|+.+-|..
T Consensus 263 ~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-----------------------------GeL~~IGATT~~EYRk 313 (786)
T COG0542 263 NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-----------------------------GELRCIGATTLDEYRK 313 (786)
T ss_pred CeEEEEechhhhcCCCcccccccchhhhhHHHHhc-----------------------------CCeEEEEeccHHHHHH
Confidence 899999999999875432 12 222211111 1124555666665543
Q ss_pred hh---hhhccceEEEEecCcCHHHHHHHHHHHhh----hcCCCCCHHHHHHHHHHccCCHH------HHHHHHHHHHh
Q 002241 446 AL---RSLRQIAKVHVFIQPSVSRVVSRLKHICN----NESMKTSSIALTTLAEYTECDIR------SCLNTLQFLDK 510 (948)
Q Consensus 446 ~L---r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~----~Egi~id~~~L~~L~e~s~GDIR------~aIn~LQ~~~~ 510 (948)
.+ ..|-++...|.+..|+.++-+.+|+-+.. .+++.+++++|.+.+..|..-|- .||.-+.-+|.
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH
Confidence 22 23556778899999999999999986654 46789999999999887644332 35555554443
No 207
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.27 E-value=7.5e-06 Score=98.15 Aligned_cols=178 Identities=15% Similarity=0.198 Sum_probs=103.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHH-H---H----h-hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILD-V---V----Q-MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~-~---~----~-~~sv~~~~kp~iLIIDE 379 (948)
..+||+|++||||+++|++|-... +-.++.+|++..-. ..++..+-. . + . ...++.......|+|||
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Lde 306 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDE 306 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeC
Confidence 469999999999999999986543 34789999987542 222222110 0 0 0 00011123467899999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh-----hh-hccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL-----RS-LRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L-----r~-Lr~~ 453 (948)
||.++. ..+..|+.+++....... . +.........|||+++....... +. |..+
T Consensus 307 I~~L~~---~~Q~~Ll~~l~~~~~~~~---g--------------~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~r 366 (520)
T PRK10820 307 IGEMSP---RMQAKLLRFLNDGTFRRV---G--------------EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYR 366 (520)
T ss_pred hhhCCH---HHHHHHHHHHhcCCcccC---C--------------CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhh
Confidence 999854 566788888875321000 0 00011234568887664322111 11 2222
Q ss_pred eEEEEecCcCHH----HHH----HHHHHHhhhcCC---CCCHHHHHHHHHH-ccCCHHHHHHHHHHHHh
Q 002241 454 AKVHVFIQPSVS----RVV----SRLKHICNNESM---KTSSIALTTLAEY-TECDIRSCLNTLQFLDK 510 (948)
Q Consensus 454 ~~iI~F~~p~~~----~l~----~~L~~I~~~Egi---~id~~~L~~L~e~-s~GDIR~aIn~LQ~~~~ 510 (948)
-..+.+.-|+.. .+. ..|...|.+.|. .++++++..|..+ -.|++|..-|.++.+..
T Consensus 367 L~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 367 LNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred cCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 122333333332 222 224556666553 6899999999988 68999999999987764
No 208
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.4e-05 Score=88.45 Aligned_cols=151 Identities=13% Similarity=0.186 Sum_probs=96.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcceecCCC-CCChHHHHHHHHHHHhhh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------------HVVEVNASD-DRSSSTIENKILDVVQMN 364 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------------~viEiNaSd-~rs~~~~~~~I~~~~~~~ 364 (948)
....+||+|| +||+++|..+|+.+-. +++.+.... .-..+.+++.+..+.. .
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~-~ 99 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ-S 99 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh-C
Confidence 3478999996 6899999999986522 233332211 1123455544433332 2
Q ss_pred cccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc
Q 002241 365 SVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA 444 (948)
Q Consensus 365 sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~ 444 (948)
.. .+..+|+|||++|.+.. .+.++|++.++.... +.-+|++|++...
T Consensus 100 p~--~~~~kV~II~~ad~m~~---~AaNaLLKtLEEPp~----------------------------~t~~iL~t~~~~~ 146 (290)
T PRK07276 100 GY--EGKQQVFIIKDADKMHV---NAANSLLKVIEEPQS----------------------------EIYIFLLTNDENK 146 (290)
T ss_pred cc--cCCcEEEEeehhhhcCH---HHHHHHHHHhcCCCC----------------------------CeEEEEEECChhh
Confidence 22 45679999999999954 788999999986332 2347888877553
Q ss_pred hhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHH
Q 002241 445 PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTL 505 (948)
Q Consensus 445 p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~L 505 (948)
.|..++++|..|+|.+ +.+.+.+.| ..+|+. ......++.. .|.+..|+..+
T Consensus 147 -lLpTI~SRcq~i~f~~-~~~~~~~~L----~~~g~~--~~~a~~la~~-~~s~~~A~~l~ 198 (290)
T PRK07276 147 -VLPTIKSRTQIFHFPK-NEAYLIQLL----EQKGLL--KTQAELLAKL-AQSTSEAEKLA 198 (290)
T ss_pred -CchHHHHcceeeeCCC-cHHHHHHHH----HHcCCC--hHHHHHHHHH-CCCHHHHHHHh
Confidence 6777899999999965 555555544 456754 3333444444 45677776544
No 209
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=98.25 E-value=6.4e-05 Score=84.81 Aligned_cols=197 Identities=11% Similarity=0.110 Sum_probs=132.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh------CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel------G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
++.||||+----....+..+.+.+ .+++.++++.+... +. .+.+.+.+.+++ +..+||+|++.+.+..
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~---~~-~~~~~~~t~pff--~~~rlVvv~~~~~~~~ 75 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQ---AI-QALNEAMTPPFG--SGGRLVWLKNSPLCQG 75 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchH---HH-HHHHHhcCCCCC--CCceEEEEeCchhhcc
Confidence 478999998877777777776654 45677777665422 22 222333333433 4678999999865533
Q ss_pred CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc---hhhhhhccceEEEEecCc
Q 002241 386 DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---PALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 386 ~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---p~Lr~Lr~~~~iI~F~~p 462 (948)
..+...+.|.+++.... ...-+|+++.+..+ ...+.+...+.++.|..+
T Consensus 76 ~~~~~~~~L~~~l~~~~----------------------------~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~ 127 (326)
T PRK07452 76 CSEELLAELERTLPLIP----------------------------ENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLI 127 (326)
T ss_pred CCHHHHHHHHHHHcCCC----------------------------CCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCC
Confidence 34456667777775311 11224444333211 122335557788888765
Q ss_pred ---CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc----CccccccccccceeccccccccHH
Q 002241 463 ---SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK----KEILNVMDIGSQVVGRKDMSRSAF 535 (948)
Q Consensus 463 ---~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~----~~~~~~~~i~~~~vg~kD~~~~lf 535 (948)
...++...++..+.+.|+.++.+++..|++.+++|++.+.|.|+-++.- ...++.+++.. .++.. ..++|
T Consensus 128 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~-~v~~~--~~~if 204 (326)
T PRK07452 128 PPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKA-LVSNT--TQNSL 204 (326)
T ss_pred CcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHH-HhccC--cCcHH
Confidence 4567899999999999999999999999999999999999999987652 34577777764 33432 35899
Q ss_pred HHHHHHHhcc
Q 002241 536 DIWKEIFQKR 545 (948)
Q Consensus 536 ~i~~~If~~~ 545 (948)
++++.++..+
T Consensus 205 ~l~dai~~~~ 214 (326)
T PRK07452 205 QLADALLQGN 214 (326)
T ss_pred HHHHHHHCCC
Confidence 9999988764
No 210
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=98.24 E-value=5e-05 Score=85.90 Aligned_cols=229 Identities=14% Similarity=0.151 Sum_probs=143.7
Q ss_pred CCceEEEEcCC-CCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 310 EQKVLLLCGPP-GLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 310 ~~k~LLL~GPP-GtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
..+++||||+- +.-...+-+++.... .++++.+.+++.. .+.+.+.+.+.+++ +...+|+|++++.+
T Consensus 16 ~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~-----~~~l~~~~~t~~lF--~~~klvii~~~~~l 88 (340)
T PRK05574 16 LAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSETD-----WDDVLEACQSLPLF--SDRKLVELRLPEFL 88 (340)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCCC-----HHHHHHHhhccCcc--ccCeEEEEECCCCC
Confidence 45899999975 554444444444322 2455666665432 23455666666766 35789999999887
Q ss_pred cCCC-hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEe-cCCCch-h----hhhhccceEE
Q 002241 384 LGDG-KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICIC-NDLYAP-A----LRSLRQIAKV 456 (948)
Q Consensus 384 ~~~~-~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ic-NDl~~p-~----Lr~Lr~~~~i 456 (948)
.... ...+..|.+.+ ... ....-+++++ +.+... . ...+...+.+
T Consensus 89 ~~~~~~~~l~~l~~~l-~~~---------------------------~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~ 140 (340)
T PRK05574 89 TGAKGEKALKRLEAYL-NPL---------------------------PHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVV 140 (340)
T ss_pred CchhHHHHHHHHHHhc-cCC---------------------------CCCcEEEEEECCcCCHHHHhhHHHHHHHhCceE
Confidence 5431 11222333222 100 0011233333 333221 1 3445567899
Q ss_pred EEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc--CccccccccccceeccccccccH
Q 002241 457 HVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK--KEILNVMDIGSQVVGRKDMSRSA 534 (948)
Q Consensus 457 I~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~--~~~~~~~~i~~~~vg~kD~~~~l 534 (948)
+.|.+++..++...+..+|...|+.++++++..|++.++||++.+.+.|+-++.- .+.++.+++...+. .....++
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~--~~~~~~~ 218 (340)
T PRK05574 141 VEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVP--DSARFDV 218 (340)
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh--hhhcCCH
Confidence 9999999999999999999999999999999999999999999999999887642 22366666654322 2334589
Q ss_pred HHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHhh
Q 002241 535 FDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENIL 589 (948)
Q Consensus 535 f~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~eNyl 589 (948)
|++++.++..+. ...+..+..++.+..++-.++..|...+.
T Consensus 219 f~l~dai~~~~~--------------~~a~~~l~~l~~~~~~~~~il~~l~~~~~ 259 (340)
T PRK05574 219 FDLVDAILAGKI--------------KRALRILDGLRLEGEEPIKLLAALQREFR 259 (340)
T ss_pred HHHHHHHHCCCH--------------HHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 999999987642 12334444455444445566655555543
No 211
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.21 E-value=2.3e-05 Score=84.22 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=48.8
Q ss_pred hccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH-ccCCHHHHHHHHH
Q 002241 450 LRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY-TECDIRSCLNTLQ 506 (948)
Q Consensus 450 Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~-s~GDIR~aIn~LQ 506 (948)
|..+-.+|.-.+.+.+++.++++.-+..|++.++++++..|++. +.-.+|.|+..|-
T Consensus 355 llDRl~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942|consen 355 LLDRLLIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred HhhheeEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence 45566778888899999999999999999999999999999985 4568999887664
No 212
>PF05729 NACHT: NACHT domain
Probab=98.20 E-value=1.4e-05 Score=79.85 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=81.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC---------CcceecCCCCCChH---HHHHHHHHHHhh---------hcccccC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY---------HVVEVNASDDRSSS---TIENKILDVVQM---------NSVMADS 370 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~---------~viEiNaSd~rs~~---~~~~~I~~~~~~---------~sv~~~~ 370 (948)
+.++|+|+||+||||+++.++.++-. -++.++..+..... .+.+.|...... .......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 47999999999999999999987521 12333333322211 233333221110 0111245
Q ss_pred CCcEEEecCcccccCCChh-----HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch
Q 002241 371 RPKCLVIDEIDGALGDGKG-----AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP 445 (948)
Q Consensus 371 kp~iLIIDEID~l~~~~~~-----~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p 445 (948)
...+||||-+|.+...... ....|..++... ......+|++|.....+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~---------------------------~~~~~~liit~r~~~~~ 133 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA---------------------------LPPGVKLIITSRPRAFP 133 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc---------------------------cCCCCeEEEEEcCChHH
Confidence 6789999999998764322 222233333210 12246688888876665
Q ss_pred hhhhhccceEEEEecCcCHHHHHHHHHHHhh
Q 002241 446 ALRSLRQIAKVHVFIQPSVSRVVSRLKHICN 476 (948)
Q Consensus 446 ~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~ 476 (948)
.+.........+.+.+-+.+++.+.++..+.
T Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 134 DLRRRLKQAQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred HHHHhcCCCcEEEECCCCHHHHHHHHHHHhh
Confidence 5655544556778888888888888876653
No 213
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.20 E-value=1.3e-05 Score=90.57 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=104.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHH----Hh-----hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDV----VQ-----MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~----~~-----~~sv~~~~kp~iLIIDE 379 (948)
..+||+|++||||+++|++|-... +-.++.+|++.... ..+...+-.. +. ............|+|||
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-HHHHHHHccccccccCCcccccCCchhccCCCeEEeCC
Confidence 579999999999999999887653 45799999987532 2232222100 00 00011233467899999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch-----hh-hhhccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP-----AL-RSLRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p-----~L-r~Lr~~ 453 (948)
||.+.. ..+..|+.+++....... .+.........||++++..... .+ ..|..+
T Consensus 109 i~~L~~---~~Q~~L~~~l~~~~~~~~-----------------g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~ 168 (326)
T PRK11608 109 LATAPM---LVQEKLLRVIEYGELERV-----------------GGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDR 168 (326)
T ss_pred hhhCCH---HHHHHHHHHHhcCcEEeC-----------------CCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHh
Confidence 999854 567788888865321100 0000123346678877653211 11 112112
Q ss_pred --eEEEEecCcC-----HHHHH-HHHHHHhhhcCC----CCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 --AKVHVFIQPS-----VSRVV-SRLKHICNNESM----KTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 --~~iI~F~~p~-----~~~l~-~~L~~I~~~Egi----~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
...|.+++.. ...++ ..|..+|.+.+. .++++++..|..+. -|+||..-|.++.++..
T Consensus 169 l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 169 LAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred cCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 2234443221 12222 224445655443 47999999999874 79999999999887653
No 214
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.19 E-value=2.4e-05 Score=86.11 Aligned_cols=174 Identities=16% Similarity=0.113 Sum_probs=103.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC---------CCcceecCCCCCChHHHHHHHHHHHhhh---------------c
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG---------YHVVEVNASDDRSSSTIENKILDVVQMN---------------S 365 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG---------~~viEiNaSd~rs~~~~~~~I~~~~~~~---------------s 365 (948)
...++||+|++|.|||++++-.++... ..|+.+.+...-+...+...|.+++..- .
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 347899999999999999999998642 3566666665555556666666655421 1
Q ss_pred ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch
Q 002241 366 VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP 445 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p 445 (948)
+...-+..+||||||+.+..+....+..+++.+..- ...+..||||+....-..
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L--------------------------~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL--------------------------GNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH--------------------------hhccCCCeEEeccHHHHH
Confidence 123456889999999998765544555666665421 114568999986542221
Q ss_pred hh---hhhccceEEEEecCcCH-HHHHHHHHHHhhh----cCCC-CCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 446 AL---RSLRQIAKVHVFIQPSV-SRVVSRLKHICNN----ESMK-TSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 446 ~L---r~Lr~~~~iI~F~~p~~-~~l~~~L~~I~~~----Egi~-id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
++ ..+.++...+.+++=.. ++....|..+-.. +.-. .+.+....|.+.|+|-|-...+.|..++
T Consensus 194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA 266 (302)
T PF05621_consen 194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAA 266 (302)
T ss_pred HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 22 12333445555543221 2333333333221 1112 3456678899999887766666555554
No 215
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.18 E-value=1.6e-05 Score=95.04 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=102.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH-----------hCCCcceecCCCCCChHHHHHHHHH----HHh-h-----hcccccC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH-----------CGYHVVEVNASDDRSSSTIENKILD----VVQ-M-----NSVMADS 370 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke-----------lG~~viEiNaSd~rs~~~~~~~I~~----~~~-~-----~sv~~~~ 370 (948)
..+||+|++||||+++|++|-+. .+..++.+|++.... ..++..+-. ++. . ..++...
T Consensus 243 ~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A 321 (538)
T PRK15424 243 AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIA 321 (538)
T ss_pred CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHHHHhcCCccccccCccccccCCchhcc
Confidence 57999999999999999999876 456899999986542 222221110 000 0 0011123
Q ss_pred CCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh-
Q 002241 371 RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS- 449 (948)
Q Consensus 371 kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~- 449 (948)
....|+||||+.++. ..+..|+.++....... .. +.........||+++|......+..
T Consensus 322 ~gGTLfLdeI~~Lp~---~~Q~kLl~~L~e~~~~r---~G--------------~~~~~~~dvRiIaat~~~L~~~v~~g 381 (538)
T PRK15424 322 HGGTLFLDEIGEMPL---PLQTRLLRVLEEKEVTR---VG--------------GHQPVPVDVRVISATHCDLEEDVRQG 381 (538)
T ss_pred CCCEEEEcChHhCCH---HHHHHHHhhhhcCeEEe---cC--------------CCceeccceEEEEecCCCHHHHHhcc
Confidence 457899999999854 67778888886532210 00 0001234567888887543222211
Q ss_pred -hc----cceEEEEecCcCHH----HHHHHH----HHHhhhcCCCCCHHHHH-------HHHHH-ccCCHHHHHHHHHHH
Q 002241 450 -LR----QIAKVHVFIQPSVS----RVVSRL----KHICNNESMKTSSIALT-------TLAEY-TECDIRSCLNTLQFL 508 (948)
Q Consensus 450 -Lr----~~~~iI~F~~p~~~----~l~~~L----~~I~~~Egi~id~~~L~-------~L~e~-s~GDIR~aIn~LQ~~ 508 (948)
+| .+...+.+.-|+.. .+...+ ...+...+..++++++. .|..+ -.|++|..-|.++-+
T Consensus 382 ~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~ 461 (538)
T PRK15424 382 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERL 461 (538)
T ss_pred cchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 11 12222333334332 233333 33344466777877763 44443 369999999999987
Q ss_pred Hh
Q 002241 509 DK 510 (948)
Q Consensus 509 ~~ 510 (948)
+.
T Consensus 462 ~i 463 (538)
T PRK15424 462 AL 463 (538)
T ss_pred HH
Confidence 64
No 216
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.16 E-value=3.9e-05 Score=91.75 Aligned_cols=178 Identities=15% Similarity=0.187 Sum_probs=104.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCChHHHHHHHHH----HHh------hhcccccCCCcEEEec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRSSSTIENKILD----VVQ------MNSVMADSRPKCLVID 378 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs~~~~~~~I~~----~~~------~~sv~~~~kp~iLIID 378 (948)
..+||+|++||||+++|++|-+. .+..++.+|+..... ..+...+-. ++. ...++.......|+||
T Consensus 236 ~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLd 314 (526)
T TIGR02329 236 ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLD 314 (526)
T ss_pred CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-hHHHHHhcCCcccccccccccccccchhhcCCceEEec
Confidence 57999999999999999999875 356899999986532 112211110 000 0001112345789999
Q ss_pred CcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhh--hhcc----
Q 002241 379 EIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALR--SLRQ---- 452 (948)
Q Consensus 379 EID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr--~Lr~---- 452 (948)
||+.++. ..+..|+.++....... .. +.........||+++|......+. .++.
T Consensus 315 eI~~Lp~---~~Q~~Ll~~L~~~~~~r---~g--------------~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~ 374 (526)
T TIGR02329 315 EIGEMPL---PLQTRLLRVLEEREVVR---VG--------------GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY 374 (526)
T ss_pred ChHhCCH---HHHHHHHHHHhcCcEEe---cC--------------CCceeeecceEEeccCCCHHHHhhhcchhHHHHH
Confidence 9999854 67778888886532110 00 000123456788888754322221 1221
Q ss_pred c--eEEEEecCcCH--HHHH----HHHHHHhhhcCCCCCHHHHHH-------HHHH-ccCCHHHHHHHHHHHHh
Q 002241 453 I--AKVHVFIQPSV--SRVV----SRLKHICNNESMKTSSIALTT-------LAEY-TECDIRSCLNTLQFLDK 510 (948)
Q Consensus 453 ~--~~iI~F~~p~~--~~l~----~~L~~I~~~Egi~id~~~L~~-------L~e~-s~GDIR~aIn~LQ~~~~ 510 (948)
+ +..|.+++... +.+. ..|...+...++.++++++.. |..+ -.|++|..-|.++.++.
T Consensus 375 rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i 448 (526)
T TIGR02329 375 RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLAL 448 (526)
T ss_pred hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 1 23344433211 2222 334455555577789999887 6665 37999999999988765
No 217
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.16 E-value=7.8e-06 Score=93.41 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=116.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH----hCCCcceecCCCCCChHHHHHH---HHHHHhh-----hcccccCCCcEE
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKH----CGYHVVEVNASDDRSSSTIENK---ILDVVQM-----NSVMADSRPKCL 375 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAke----lG~~viEiNaSd~rs~~~~~~~---I~~~~~~-----~sv~~~~kp~iL 375 (948)
.|....+||.|++||||+.+|+.|... .+-.+|-+||++....-...+. ...++.- ..++.......|
T Consensus 98 ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtL 177 (403)
T COG1221 98 APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTL 177 (403)
T ss_pred CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEE
Confidence 345588999999999999999988753 3568999999876543322221 1111111 111123345799
Q ss_pred EecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh---hcc
Q 002241 376 VIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS---LRQ 452 (948)
Q Consensus 376 IIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~---Lr~ 452 (948)
++|||..++. ..+..|+.+++......... ......+.++||-+|......+.. +-+
T Consensus 178 fLDEI~~LP~---~~Q~kLl~~le~g~~~rvG~-----------------~~~~~~dVRli~AT~~~l~~~~~~g~dl~~ 237 (403)
T COG1221 178 FLDEIHRLPP---EGQEKLLRVLEEGEYRRVGG-----------------SQPRPVDVRLICATTEDLEEAVLAGADLTR 237 (403)
T ss_pred ehhhhhhCCH---hHHHHHHHHHHcCceEecCC-----------------CCCcCCCceeeeccccCHHHHHHhhcchhh
Confidence 9999999965 56678888887643321110 112355688999888766554443 323
Q ss_pred ceEEEEecCcCHHH--------HHHHHHHHhhhcCCCCC---HHHHHHHHHH-ccCCHHHHHHHHHHHHhcC
Q 002241 453 IAKVHVFIQPSVSR--------VVSRLKHICNNESMKTS---SIALTTLAEY-TECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 453 ~~~iI~F~~p~~~~--------l~~~L~~I~~~Egi~id---~~~L~~L~e~-s~GDIR~aIn~LQ~~~~~~ 512 (948)
+..++.+.-|+..+ +...|+..|.+.++.+. ++++..|..+ ..|+||..-|.++++|...
T Consensus 238 rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 238 RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 23333444444432 22335667777776543 4677777776 5899999999999998764
No 218
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.16 E-value=1.1e-05 Score=94.12 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=74.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--CcceecCCCCCChHHHHHH--HHHHHhhhcc---c-c-cCCCcEEEecCccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY--HVVEVNASDDRSSSTIENK--ILDVVQMNSV---M-A-DSRPKCLVIDEIDG 382 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~--~viEiNaSd~rs~~~~~~~--I~~~~~~~sv---~-~-~~kp~iLIIDEID~ 382 (948)
.++||.||||||||++|+++|+.++- .+..+++.-. +...+-.. +........+ . + -....+||+|||..
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft-tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS-TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec-CcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 68999999999999999999997642 2333333211 11111110 1111101111 0 0 11345999999987
Q ss_pred ccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch---hhhh-hccceEEEE
Q 002241 383 ALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP---ALRS-LRQIAKVHV 458 (948)
Q Consensus 383 l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p---~Lr~-Lr~~~~iI~ 458 (948)
+. ......|+..++...... +........|+|+++++.... .+.. +-++...+.
T Consensus 119 as---p~~QsaLLeam~Er~~t~-------------------g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~ 176 (498)
T PRK13531 119 AG---PAILNTLLTAINERRFRN-------------------GAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLW 176 (498)
T ss_pred CC---HHHHHHHHHHHHhCeEec-------------------CCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEE
Confidence 64 467889999997644311 001223456676665542221 1112 223444566
Q ss_pred ecCcC-HHHHHHHHHH
Q 002241 459 FIQPS-VSRVVSRLKH 473 (948)
Q Consensus 459 F~~p~-~~~l~~~L~~ 473 (948)
+++|. .+....+|..
T Consensus 177 vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 177 LDKVQDKANFRSMLTS 192 (498)
T ss_pred CCCCCchHHHHHHHHc
Confidence 67775 3555666654
No 219
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.15 E-value=3e-05 Score=96.24 Aligned_cols=179 Identities=14% Similarity=0.143 Sum_probs=103.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHH----HHh-----hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILD----VVQ-----MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~----~~~-----~~sv~~~~kp~iLIIDE 379 (948)
..+||+|++|||||++|++|.... +..++.+|+..... ..+...+-. ++. ............|+|||
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Lde 478 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDE 478 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEec
Confidence 469999999999999999998764 67899999986532 222211100 000 00001123457899999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhh--hhcc----c
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALR--SLRQ----I 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr--~Lr~----~ 453 (948)
|+.+.. ..+..|+.++........ . +.........||+++|......+. .++. +
T Consensus 479 i~~L~~---~~Q~~L~~~l~~~~~~~~---g--------------~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~ 538 (686)
T PRK15429 479 VGDMPL---ELQPKLLRVLQEQEFERL---G--------------SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYR 538 (686)
T ss_pred hhhCCH---HHHHHHHHHHHhCCEEeC---C--------------CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhc
Confidence 999854 667788888865321100 0 000123345688888753321111 1111 1
Q ss_pred eEEEEecCcCHH----HHH----HHHHHHhhhcCC---CCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 AKVHVFIQPSVS----RVV----SRLKHICNNESM---KTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~~iI~F~~p~~~----~l~----~~L~~I~~~Egi---~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
-..+.+.-|+.. .+. ..|..++.+.|. .++++++..|..+. .|++|..-|.++.++..
T Consensus 539 l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 539 LNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred cCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 112333333332 222 223445554443 47899999998874 79999999999887653
No 220
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.14 E-value=1.9e-05 Score=94.62 Aligned_cols=179 Identities=16% Similarity=0.147 Sum_probs=106.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHH----HHhh-----hcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILD----VVQM-----NSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~----~~~~-----~sv~~~~kp~iLIIDE 379 (948)
..+||+|++|||||++|++|.... +..++.+|++.... ..+...+-. ++.. ...........|+|||
T Consensus 211 ~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~lde 289 (509)
T PRK05022 211 LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDE 289 (509)
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecC
Confidence 579999999999999999999874 56899999987542 222221100 0000 0011123457899999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh--hcc----c
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS--LRQ----I 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~--Lr~----~ 453 (948)
||.+.. ..+..|+.++....... .. +.........||+++|......+.. ++. +
T Consensus 290 I~~L~~---~~Q~~Ll~~l~~~~~~~---~g--------------~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~r 349 (509)
T PRK05022 290 IGELPL---ALQAKLLRVLQYGEIQR---VG--------------SDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHR 349 (509)
T ss_pred hhhCCH---HHHHHHHHHHhcCCEee---CC--------------CCcceecceEEEEecCCCHHHHHHcCCccHHHHhc
Confidence 999964 66778888886532100 00 0001234567888887643222111 111 1
Q ss_pred eEEEEecCcCHH-------HHHH-HHHHHhhhcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 AKVHVFIQPSVS-------RVVS-RLKHICNNES---MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~~iI~F~~p~~~-------~l~~-~L~~I~~~Eg---i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
...+.+.-|+.. .+.. .|..++.+.| +.++++++..|..+. .|++|..-|.++.++..
T Consensus 350 l~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 350 LSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALL 419 (509)
T ss_pred ccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 112333333322 2222 2344555433 578999999999874 69999999999887654
No 221
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.14 E-value=6.1e-05 Score=80.91 Aligned_cols=145 Identities=21% Similarity=0.221 Sum_probs=88.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
..-.++||+|||||.+++.+|+.+|..++.+|+++..+...+.+.+..+.+.. .-+++||++.+.. +.+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~G--------aW~cfdefnrl~~---~vL 101 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSG--------AWLCFDEFNRLSE---EVL 101 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT---------EEEEETCCCSSH---HHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcC--------chhhhhhhhhhhH---HHH
Confidence 56678999999999999999999999999999999999888888888887753 4788999999843 444
Q ss_pred HHHHHHHHhhhccc---cccccccccCchhhhhhccccccccCCCcEEEEecCCCc---hhhhhhccceEEEEecCcCHH
Q 002241 392 EVILKMVSAERKSN---TAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---PALRSLRQIAKVHVFIQPSVS 465 (948)
Q Consensus 392 ~~Ll~li~~~~~~~---~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---p~Lr~Lr~~~~iI~F~~p~~~ 465 (948)
..+.+.+..-+... ...... .... .....+.-+.+|.|.-|. .....|+...+.|.+..|+..
T Consensus 102 S~i~~~i~~i~~al~~~~~~~~~--~g~~---------i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~ 170 (231)
T PF12774_consen 102 SVISQQIQSIQDALRAKQKSFTL--EGQE---------IKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLS 170 (231)
T ss_dssp HHHHHHHHHHHHHHHCTSSEEEE--TTCE---------EE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HH
T ss_pred HHHHHHHHHHHHhhccccccccc--CCCE---------EEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHH
Confidence 44444443322110 000000 0000 001123446677775542 233557888999999999999
Q ss_pred HHHHHHHHHhhhcCCC
Q 002241 466 RVVSRLKHICNNESMK 481 (948)
Q Consensus 466 ~l~~~L~~I~~~Egi~ 481 (948)
.+.+++ +...|..
T Consensus 171 ~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 171 LIAEIL---LLSQGFK 183 (231)
T ss_dssp HHHHHH---HHCCCTS
T ss_pred HHHHHH---HHHcCch
Confidence 887776 4456664
No 222
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=98.13 E-value=0.00026 Score=80.56 Aligned_cols=195 Identities=15% Similarity=0.114 Sum_probs=131.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC------CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG------YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG------~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
..+++||||+-.......+..+.+.+. ++++.+.+.+... . ...+.+.+++.++++ ..+||++...+
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~--~-~~~~~~~~~t~slF~--~~rlViv~~~~-- 91 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDA--D-PARLEDEANAISLFG--GRRLIWVRAGS-- 91 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhc--C-HHHHHHHHhCCCCCC--CceEEEEECCc--
Confidence 458999999999888888888877652 4555555533210 0 234556666677663 45788888543
Q ss_pred cCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc-hhhhhhc---cceEEEEe
Q 002241 384 LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA-PALRSLR---QIAKVHVF 459 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~-p~Lr~Lr---~~~~iI~F 459 (948)
+...+.|.+++... .....+|+.+..+.. ..+...- ..+..+.|
T Consensus 92 ----~~~~~~L~~~l~~~----------------------------~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~ 139 (343)
T PRK06585 92 ----KNLAAALKALLESP----------------------------PGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPC 139 (343)
T ss_pred ----hhHHHHHHHHHcCC----------------------------CCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEec
Confidence 23344555555321 011335555544332 1222221 23556788
Q ss_pred cCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc---CccccccccccceeccccccccHHH
Q 002241 460 IQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK---KEILNVMDIGSQVVGRKDMSRSAFD 536 (948)
Q Consensus 460 ~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~---~~~~~~~~i~~~~vg~kD~~~~lf~ 536 (948)
.+|+..++...+...|...|+.++++++..|++.++||++.+.|.|+-++.- ...++.+++...+ + .....++|+
T Consensus 140 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv-~-~~~e~~if~ 217 (343)
T PRK06585 140 YADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVV-G-DASALSLDD 217 (343)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-C-CcccccHHH
Confidence 8899999999999999999999999999999999999999999999987653 2457777776432 2 223458999
Q ss_pred HHHHHHhcc
Q 002241 537 IWKEIFQKR 545 (948)
Q Consensus 537 i~~~If~~~ 545 (948)
+++.++..+
T Consensus 218 l~dai~~~~ 226 (343)
T PRK06585 218 AADAALAGD 226 (343)
T ss_pred HHHHHHCCC
Confidence 999998765
No 223
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.13 E-value=1.6e-05 Score=87.57 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=89.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH--h--CCC-cceecCCCCCChHHHHHHHHHHHhhhc--c---------------c
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH--C--GYH-VVEVNASDDRSSSTIENKILDVVQMNS--V---------------M 367 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke--l--G~~-viEiNaSd~rs~~~~~~~I~~~~~~~s--v---------------~ 367 (948)
..+++.|+|++|+||||||..+++. . .|+ ++.++.+...+...+...|...+.... . .
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4589999999999999999999977 3 343 455666655444444444544443220 0 0
Q ss_pred ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh
Q 002241 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL 447 (948)
Q Consensus 368 ~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L 447 (948)
-..++.+||||+++.. ..+..+...+.. .....-||+|+-+... .
T Consensus 98 L~~~~~LlVlDdv~~~-----~~~~~l~~~~~~----------------------------~~~~~kilvTTR~~~v--~ 142 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDE-----EDLEELREPLPS----------------------------FSSGSKILVTTRDRSV--A 142 (287)
T ss_dssp HCCTSEEEEEEEE-SH-----HHH-------HC----------------------------HHSS-EEEEEESCGGG--G
T ss_pred hccccceeeeeeeccc-----cccccccccccc----------------------------cccccccccccccccc--c
Confidence 0355899999999865 223223222211 0112447777765321 2
Q ss_pred hhhccceEEEEecCcCHHHHHHHHHHHhhhcC---CCCCHHHHHHHHHHccCCHH
Q 002241 448 RSLRQIAKVHVFIQPSVSRVVSRLKHICNNES---MKTSSIALTTLAEYTECDIR 499 (948)
Q Consensus 448 r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Eg---i~id~~~L~~L~e~s~GDIR 499 (948)
.........+.+...+.++..+.+...+.... ....++....|++.|+|-.=
T Consensus 143 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 143 GSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp TTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 22222367888998899998888888765544 12224567899999988433
No 224
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.11 E-value=3.4e-05 Score=76.98 Aligned_cols=113 Identities=24% Similarity=0.397 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CC-------------------CcceecC-----------CCCCC------hHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GY-------------------HVVEVNA-----------SDDRS------SST 352 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~-------------------~viEiNa-----------Sd~rs------~~~ 352 (948)
--++++||||+||||++.-+|..+ || .++-+.. |-.+- .+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 458899999999999999999654 33 3333321 11111 122
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCC
Q 002241 353 IENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLL 432 (948)
Q Consensus 353 ~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~ 432 (948)
+++....+++.+. ..-.|||||||.-|--..+.+.+++-+++. +.
T Consensus 86 le~i~~~al~rA~----~~aDvIIIDEIGpMElks~~f~~~ve~vl~-------------------------------~~ 130 (179)
T COG1618 86 LEEIAIPALRRAL----EEADVIIIDEIGPMELKSKKFREAVEEVLK-------------------------------SG 130 (179)
T ss_pred HHHHhHHHHHHHh----hcCCEEEEecccchhhccHHHHHHHHHHhc-------------------------------CC
Confidence 3333333333211 225899999998774333445444444432 23
Q ss_pred CcEEEEec-CCCchhhhhhccceEEEEe
Q 002241 433 RPVICICN-DLYAPALRSLRQIAKVHVF 459 (948)
Q Consensus 433 rPII~icN-Dl~~p~Lr~Lr~~~~iI~F 459 (948)
.|+|.+-- ...+|-+..++....++-|
T Consensus 131 kpliatlHrrsr~P~v~~ik~~~~v~v~ 158 (179)
T COG1618 131 KPLIATLHRRSRHPLVQRIKKLGGVYVF 158 (179)
T ss_pred CcEEEEEecccCChHHHHhhhcCCEEEE
Confidence 56777654 3347778888877666665
No 225
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.10 E-value=1.6e-05 Score=92.15 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+.++|+||||||||++|+.+|..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999999875
No 226
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.10 E-value=4.2e-05 Score=83.96 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=60.7
Q ss_pred ecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhc------CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002241 439 CNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNE------SMKTSSIALTTLAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 439 cNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~E------gi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
|-+.+......|+++|.++.|.+.+.+.+..+|++.+..+ .+.++++++..|++.++||.|.+||.|+.++.
T Consensus 16 TENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 16 TENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLLERMFL 93 (300)
T ss_pred CCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344444456788999999999999999999999888642 36899999999999999999999999999653
No 227
>PHA02624 large T antigen; Provisional
Probab=98.08 E-value=7.9e-06 Score=96.77 Aligned_cols=128 Identities=25% Similarity=0.371 Sum_probs=78.9
Q ss_pred cCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 305 STGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 305 ~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
..|.|.++++||+||||+||||++.+|++.+|-.++.+|.+..++.-.+. . ...-.+++||++-+..
T Consensus 425 l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~----------p---l~D~~~~l~dD~t~~~ 491 (647)
T PHA02624 425 VENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELG----------C---AIDQFMVVFEDVKGQP 491 (647)
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhh----------h---hhhceEEEeeeccccc
Confidence 46788899999999999999999999999997788889977766542221 1 1134689999997654
Q ss_pred CC------ChhHH--HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEE
Q 002241 385 GD------GKGAV--EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKV 456 (948)
Q Consensus 385 ~~------~~~~~--~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~i 456 (948)
.. +.+.. ..|.+.+...- .++ .. .+.+. .....--|.|+|||+-.-|.-- .-+++.+
T Consensus 492 ~~~~~Lp~G~~~dNl~~lRn~LDG~V-----~v~------ld--~KH~n-~~q~~~PPlliT~Ney~iP~T~-~~Rf~~~ 556 (647)
T PHA02624 492 ADNKDLPSGQGMNNLDNLRDYLDGSV-----PVN------LE--KKHLN-KRSQIFPPGIVTMNEYLIPQTV-KARFAKV 556 (647)
T ss_pred cccccCCcccccchhhHHHhhcCCCC-----ccc------cc--hhccC-chhccCCCeEEeecCcccchhH-HHHHHHh
Confidence 31 12222 34444443210 000 00 11111 1223346799999987765432 2346777
Q ss_pred EEec
Q 002241 457 HVFI 460 (948)
Q Consensus 457 I~F~ 460 (948)
+.|.
T Consensus 557 ~~F~ 560 (647)
T PHA02624 557 LDFK 560 (647)
T ss_pred cccc
Confidence 7775
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.06 E-value=0.00011 Score=77.59 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=96.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
+++||+|--|+|||+|++++-.++ |..+|||+-.|.-.-..+.+.++. ...+-|||.|++- +..+.
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~---------~~~kFIlFcDDLS--Fe~gd 154 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRA---------RPEKFILFCDDLS--FEEGD 154 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhc---------CCceEEEEecCCC--CCCCc
Confidence 789999999999999999999886 688999998876665544444432 3567799999883 44455
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC------------CC----------chh
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND------------LY----------APA 446 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND------------l~----------~p~ 446 (948)
...+.|-..++.+.... ..++-|..|.|- .+ ...
T Consensus 155 ~~yK~LKs~LeG~ve~r------------------------P~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEK 210 (287)
T COG2607 155 DAYKALKSALEGGVEGR------------------------PANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEK 210 (287)
T ss_pred hHHHHHHHHhcCCcccC------------------------CCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHh
Confidence 66666666665432211 111112222221 10 011
Q ss_pred hhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 002241 447 LRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTT 489 (948)
Q Consensus 447 Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~ 489 (948)
+.---++...+.|.+++.+..++++...+++.|+.++++.+..
T Consensus 211 lSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~ 253 (287)
T COG2607 211 LSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHA 253 (287)
T ss_pred hchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1111347888999999999999999999999999998766544
No 229
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=1.6e-05 Score=84.49 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=41.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCC----------CCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS----------DDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaS----------d~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
..++|+|+||+||||||.+||++++..+..+... -..+...+...|..+.+. ..+..+|||||+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~-----~~~~dlLIIDd~G 92 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN-----DYRIPLIIFDDAG 92 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc-----CCCCCEEEEeCCc
Confidence 4799999999999999999999987443332111 011233455555544432 2344689999974
No 230
>PRK15115 response regulator GlrR; Provisional
Probab=98.06 E-value=3.4e-05 Score=90.66 Aligned_cols=179 Identities=14% Similarity=0.183 Sum_probs=104.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHH----Hh-----hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDV----VQ-----MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~----~~-----~~sv~~~~kp~iLIIDE 379 (948)
..++|+|++|+|||++|+.+.+.. +..++.+|+..... ..+...+-.. +. ............|+|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 578999999999999999998874 46899999987522 2222221100 00 00011233457999999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh------hccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS------LRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~------Lr~~ 453 (948)
||.+.. ..+..|+..++....... +. .......+.||++++......+.. |-.+
T Consensus 237 i~~l~~---~~q~~L~~~l~~~~~~~~--g~---------------~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~ 296 (444)
T PRK15115 237 IGDMPA---PLQVKLLRVLQERKVRPL--GS---------------NRDIDIDVRIISATHRDLPKAMARGEFREDLYYR 296 (444)
T ss_pred cccCCH---HHHHHHHHHHhhCCEEeC--CC---------------CceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHh
Confidence 999854 567788888875332100 00 001133566888877432211111 0011
Q ss_pred eEEEEecCcCHHH----HH----HHHHHHhhhcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 AKVHVFIQPSVSR----VV----SRLKHICNNES---MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~~iI~F~~p~~~~----l~----~~L~~I~~~Eg---i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
...+.+.-|+..+ +. ..|..++...+ ..++++++..|..+. .|++|...|.++.++..
T Consensus 297 l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred hceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 1123333333322 22 22333343333 248999999999997 89999999999987653
No 231
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.02 E-value=1.4e-05 Score=75.38 Aligned_cols=70 Identities=26% Similarity=0.419 Sum_probs=45.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC--------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGY--------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~--------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
+.|+||||+|||++|+.||+.+.- .++..++.+. +.+ +.....|+++||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~---------~w~--------gY~~q~vvi~DD~~~~~~ 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDK---------FWD--------GYQGQPVVIIDDFGQDND 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccc---------hhh--------ccCCCcEEEEeecCcccc
Confidence 479999999999999999987642 2223233221 100 123557999999988754
Q ss_pred C-ChhHHHHHHHHHHh
Q 002241 386 D-GKGAVEVILKMVSA 400 (948)
Q Consensus 386 ~-~~~~~~~Ll~li~~ 400 (948)
. .......++.+++.
T Consensus 64 ~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 64 GYNYSDESELIRLISS 79 (107)
T ss_pred ccchHHHHHHHHHHhc
Confidence 3 12345667777764
No 232
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.01 E-value=5.9e-05 Score=81.47 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=50.3
Q ss_pred hhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 002241 449 SLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT-ECDIRSCLNTLQFL 508 (948)
Q Consensus 449 ~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s-~GDIR~aIn~LQ~~ 508 (948)
-|..+..+|.-.+.+.+.+.++|+.-|..|.+.+++++++.|.... .-.+|.||+.+-..
T Consensus 345 D~lDR~lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a 405 (454)
T KOG2680|consen 345 DLLDRMLIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAA 405 (454)
T ss_pred HHhhhhheeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3556777888889999999999999999999999999999998763 45799998766443
No 233
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.00 E-value=8.2e-05 Score=91.32 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.+||+||+||||||+|++|++.+
T Consensus 27 ~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 27 GVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred eEEEEcCCCCcHHHHHHHHHHhC
Confidence 59999999999999999999887
No 234
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.95 E-value=5.6e-05 Score=88.83 Aligned_cols=179 Identities=16% Similarity=0.175 Sum_probs=104.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHH----HH----h-hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILD----VV----Q-MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~----~~----~-~~sv~~~~kp~iLIIDE 379 (948)
..++|+|++|+||+++|+++.... +..++.+|++.... ..+...+-. ++ . ............|+|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 568899999999999999998764 45789999987532 222221100 00 0 00011124567899999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh-----hh-hccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL-----RS-LRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L-----r~-Lr~~ 453 (948)
|+.+.. ..+..|+.++........ . +......+..||++++......+ ++ |-.+
T Consensus 242 i~~l~~---~~q~~l~~~l~~~~~~~~---~--------------~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~ 301 (445)
T TIGR02915 242 IGDLPL---NLQAKLLRFLQERVIERL---G--------------GREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYR 301 (445)
T ss_pred hhhCCH---HHHHHHHHHHhhCeEEeC---C--------------CCceeeeceEEEEecCCCHHHHHHcCCccHHHHHH
Confidence 999854 677788888875321100 0 00012345668888775332111 11 1111
Q ss_pred eEEEEecCcCHHH-------HHH-HHHHHhhhcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 AKVHVFIQPSVSR-------VVS-RLKHICNNES---MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~~iI~F~~p~~~~-------l~~-~L~~I~~~Eg---i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
...+.+.-|+..+ +.. .|..++...+ ..++++++..|..+. .|++|..-|.++.++..
T Consensus 302 l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 302 IAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred hccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 2223333333322 222 3444454434 468999999999875 79999999999887653
No 235
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.94 E-value=0.00013 Score=82.84 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..+||+||+||||||+|+++++-+
T Consensus 39 ~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 39 GGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998765
No 236
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.94 E-value=9.5e-06 Score=82.97 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=36.6
Q ss_pred CCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC-Cchhhh
Q 002241 370 SRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL-YAPALR 448 (948)
Q Consensus 370 ~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl-~~p~Lr 448 (948)
..+.+||||||..+=-...++.+++.++++. ..|+|.+--.. ..+.+.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~s-------------------------------~~~vi~vv~~~~~~~~l~ 142 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLDS-------------------------------NKPVIGVVHKRSDNPFLE 142 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHCT-------------------------------TSEEEEE--SS--SCCHH
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHcC-------------------------------CCcEEEEEecCCCcHHHH
Confidence 4678999999988855566888888888752 25677765554 455566
Q ss_pred hhccc--eEEEEecCcCH
Q 002241 449 SLRQI--AKVHVFIQPSV 464 (948)
Q Consensus 449 ~Lr~~--~~iI~F~~p~~ 464 (948)
.++.+ +.++.+..-+.
T Consensus 143 ~i~~~~~~~i~~vt~~NR 160 (168)
T PF03266_consen 143 EIKRRPDVKIFEVTEENR 160 (168)
T ss_dssp HHHTTTTSEEEE--TTTC
T ss_pred HHHhCCCcEEEEeChhHH
Confidence 66654 66666554433
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.94 E-value=4.3e-05 Score=75.77 Aligned_cols=33 Identities=45% Similarity=0.583 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
+++|+||||+||||++..+|.++ |..++.++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 47899999999999999999886 5566666554
No 238
>PRK05629 hypothetical protein; Validated
Probab=97.92 E-value=0.00055 Score=77.12 Aligned_cols=221 Identities=16% Similarity=0.159 Sum_probs=142.3
Q ss_pred CCceEEEEcC-CCCcHHHHH---HHHHHHh--CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 310 EQKVLLLCGP-PGLGKTTLA---HVAAKHC--GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 310 ~~k~LLL~GP-PGtGKTTLA---~~lAkel--G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
..++.||||+ ++.=+-+.. ..+.++. .++++++++.+... ..|.++. +.+++ +.+.+|+++..+..
T Consensus 5 l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~~-----~~l~~~~-t~slF--~~~rlV~v~~~~~~ 76 (318)
T PRK05629 5 QPPVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVSQ-----GELLDAL-SPSLF--GEDRVIVLTNMEQA 76 (318)
T ss_pred CCceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCCH-----HHHHHhh-CcCcc--CCceEEEEeChHhc
Confidence 3479999997 444333322 2222221 46788888776543 2333443 44554 35689999987653
Q ss_pred cCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc-h-hhhhhccceEEEEecC
Q 002241 384 LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA-P-ALRSLRQIAKVHVFIQ 461 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~-p-~Lr~Lr~~~~iI~F~~ 461 (948)
+ +...+.+++.+.... . ..-+|+++..... . ....++..+.++.|.+
T Consensus 77 -~--~~~~~~l~~~l~~~~---------------------------~-~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~ 125 (318)
T PRK05629 77 -G--KEPTDLALSAAVDPS---------------------------P-GIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAK 125 (318)
T ss_pred -C--hhHHHHHHHHHhCCC---------------------------C-CeEEEEEcCCcchhhHHHHHHHhcceEeeCCC
Confidence 2 223455555554311 1 1225566654321 1 1234677889999999
Q ss_pred cCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHH
Q 002241 462 PSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKE 540 (948)
Q Consensus 462 p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~ 540 (948)
+...++...+...+.+.|+.++++++..|++.+++|+..+-+.++-++.- .+.++.+++...+.. ....++|++++.
T Consensus 126 ~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~--~~~~~iF~l~dA 203 (318)
T PRK05629 126 LKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVG--VAEVSGFDIADL 203 (318)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCC--CccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999977642 345666666643332 244589999999
Q ss_pred HHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHH
Q 002241 541 IFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIH 585 (948)
Q Consensus 541 If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~ 585 (948)
++..+. ...+..+..++....++-.++..+.
T Consensus 204 v~~g~~--------------~~Al~~l~~l~~~g~~pi~il~~l~ 234 (318)
T PRK05629 204 ACAGQV--------------SKAVASTRRALQLGVSPVALAAALS 234 (318)
T ss_pred HHcCCH--------------HHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 997653 1233444455555555555555444
No 239
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.92 E-value=7.6e-05 Score=90.68 Aligned_cols=178 Identities=14% Similarity=0.050 Sum_probs=96.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC--cceecC--CCCCChHHHHHHHHHHHhhhc------ccccCCCcEEEecCc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH--VVEVNA--SDDRSSSTIENKILDVVQMNS------VMADSRPKCLVIDEI 380 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~--viEiNa--Sd~rs~~~~~~~I~~~~~~~s------v~~~~kp~iLIIDEI 380 (948)
-.++||.|+||+|||++|+++++.++.. +++++. +.++-...+ .+...+.... ........+|+||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 3689999999999999999999987643 677764 222111111 1111111111 111234579999999
Q ss_pred ccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhh-ccceEEE
Q 002241 381 DGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSL-RQIAKVH 457 (948)
Q Consensus 381 D~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~L-r~~~~iI 457 (948)
+.+.. ..+..|++.++.........+. ........-+|+++|-.. ......| -++...|
T Consensus 94 ~rl~~---~~q~~Ll~al~~g~v~i~r~G~---------------~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v 155 (589)
T TIGR02031 94 NLLDD---GLSNRLLQALDEGVVIVEREGI---------------SVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHV 155 (589)
T ss_pred hhCCH---HHHHHHHHHHHcCCeEEEECCC---------------ceeecCceEEEEecCCccccCCCCHHHHHhccCee
Confidence 99854 6778888888654321100000 001123455777777543 1111112 2344444
Q ss_pred Eec-CcCHHHHHHHHHHHh-----------------------hhcCCCCCHHHHHHHHHHc---cCC-HHHHHHHHHHH
Q 002241 458 VFI-QPSVSRVVSRLKHIC-----------------------NNESMKTSSIALTTLAEYT---ECD-IRSCLNTLQFL 508 (948)
Q Consensus 458 ~F~-~p~~~~l~~~L~~I~-----------------------~~Egi~id~~~L~~L~e~s---~GD-IR~aIn~LQ~~ 508 (948)
.+. .+...+...+++.+. ....+.++++.+..|++.+ +.+ .|..|..+...
T Consensus 156 ~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~A 234 (589)
T TIGR02031 156 SLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAA 234 (589)
T ss_pred ecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 443 344454444443322 0134678888888888763 333 67777665543
No 240
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00013 Score=84.16 Aligned_cols=74 Identities=27% Similarity=0.369 Sum_probs=52.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHH---HHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIE---NKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~---~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
+..-..+||+||||+|||+||--+|...++.++-+-..++..+-.-. ..|...+... ..+.-.|||||+|.++.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA---YkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA---YKSPLSIIVVDDIERLL 611 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHh---hcCcceEEEEcchhhhh
Confidence 33346899999999999999999999999999988766554331111 1222222221 13566899999999885
No 241
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.87 E-value=1.9e-05 Score=80.71 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=57.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhh------------cccccCCCcEEE
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMN------------SVMADSRPKCLV 376 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~------------sv~~~~kp~iLI 376 (948)
..+||+|++||||+.+|++|-+.. +..++.+|++.. +.+.+...+ +... ..........|+
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~-~~~~~e~~L---FG~~~~~~~~~~~~~~G~l~~A~~GtL~ 98 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL-PEELLESEL---FGHEKGAFTGARSDKKGLLEQANGGTLF 98 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS--HHHHHHHH---HEBCSSSSTTTSSEBEHHHHHTTTSEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh-hcchhhhhh---hccccccccccccccCCceeeccceEEe
Confidence 679999999999999999998864 468999999865 333333222 2110 111234568999
Q ss_pred ecCcccccCCChhHHHHHHHHHHhhh
Q 002241 377 IDEIDGALGDGKGAVEVILKMVSAER 402 (948)
Q Consensus 377 IDEID~l~~~~~~~~~~Ll~li~~~~ 402 (948)
||||+.++. ..+..|+.+++...
T Consensus 99 Ld~I~~L~~---~~Q~~Ll~~l~~~~ 121 (168)
T PF00158_consen 99 LDEIEDLPP---ELQAKLLRVLEEGK 121 (168)
T ss_dssp EETGGGS-H---HHHHHHHHHHHHSE
T ss_pred ecchhhhHH---HHHHHHHHHHhhch
Confidence 999999954 67888999998643
No 242
>PHA02774 E1; Provisional
Probab=97.86 E-value=8.5e-05 Score=87.95 Aligned_cols=123 Identities=19% Similarity=0.241 Sum_probs=73.0
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcce-ecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE-VNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viE-iNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
.+.|.++.++|+||||||||++|.+|++.++..++- +|..+ .+. ++ . -..-.++||||+-+.
T Consensus 429 ~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-----~Fw------Lq--p---l~d~ki~vlDD~t~~- 491 (613)
T PHA02774 429 KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-----HFW------LQ--P---LADAKIALLDDATHP- 491 (613)
T ss_pred hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-----ccc------cc--h---hccCCEEEEecCcch-
Confidence 567888999999999999999999999999766654 77521 111 11 1 123469999999321
Q ss_pred CCChhHHH-HHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEEEecC
Q 002241 385 GDGKGAVE-VILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQ 461 (948)
Q Consensus 385 ~~~~~~~~-~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~ 461 (948)
....+. .|..++..... + ...|.|. .......|+|+|+|--. ....+-|.++...++|+.
T Consensus 492 --~w~y~d~~Lrn~LdG~~v------~--------lD~Khk~-~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n 554 (613)
T PHA02774 492 --CWDYIDTYLRNALDGNPV------S--------IDCKHKA-PVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPN 554 (613)
T ss_pred --HHHHHHHHHHHHcCCCcc------e--------eeecccC-cccccCCCEEEecCCCcccchhhHHhhhhEEEEECCC
Confidence 111222 33333322110 0 0011221 13345678999998432 445666777777788754
Q ss_pred c
Q 002241 462 P 462 (948)
Q Consensus 462 p 462 (948)
|
T Consensus 555 ~ 555 (613)
T PHA02774 555 P 555 (613)
T ss_pred C
Confidence 3
No 243
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.83 E-value=0.0001 Score=87.35 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=104.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHH----H-h----hhcccccCCCcEEEec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDV----V-Q----MNSVMADSRPKCLVID 378 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~----~-~----~~sv~~~~kp~iLIID 378 (948)
...+||+|++|||||++|+++.... +..++.+|+++... ..+...+-.. + . ............|+||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~ 239 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLD 239 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEe
Confidence 3679999999999999999999875 46899999987622 2222222100 0 0 0001112345689999
Q ss_pred CcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchh-----h-hhhcc
Q 002241 379 EIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPA-----L-RSLRQ 452 (948)
Q Consensus 379 EID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~-----L-r~Lr~ 452 (948)
|||.+.. ..+..|+.++......... +......+..||++++...... + ..|..
T Consensus 240 ~i~~l~~---~~q~~L~~~l~~~~~~~~~-----------------~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 299 (469)
T PRK10923 240 EIGDMPL---DVQTRLLRVLADGQFYRVG-----------------GYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 (469)
T ss_pred ccccCCH---HHHHHHHHHHhcCcEEeCC-----------------CCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH
Confidence 9999854 5677888888753221100 0001123567888876432111 1 11222
Q ss_pred c--eEEEEecCc-----CHHHHH-HHHHHHhhhcCC---CCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 453 I--AKVHVFIQP-----SVSRVV-SRLKHICNNESM---KTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 453 ~--~~iI~F~~p-----~~~~l~-~~L~~I~~~Egi---~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
+ +..|.+++. +...++ ..|...+...+. .++++++..|..+. .|++|..-|.++.++..
T Consensus 300 ~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 2 233333322 112222 223344444333 47899999999874 79999999999887653
No 244
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.81 E-value=2.2e-05 Score=86.48 Aligned_cols=150 Identities=20% Similarity=0.225 Sum_probs=78.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CCcceecCCCCCChHHHHHHHHHHHhh--hccc--ccCCCcEEEecCcccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG---YHVVEVNASDDRSSSTIENKILDVVQM--NSVM--ADSRPKCLVIDEIDGA 383 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG---~~viEiNaSd~rs~~~~~~~I~~~~~~--~sv~--~~~kp~iLIIDEID~l 383 (948)
.+.+||+||+|||||++++.+-+.+. |-+..++.|..-+...+...+...+.. ..+. ..++..|++|||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 37899999999999999987766553 224556665543333333322221111 0111 2456679999999754
Q ss_pred cCCChh---HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEEE
Q 002241 384 LGDGKG---AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHV 458 (948)
Q Consensus 384 ~~~~~~---~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~ 458 (948)
..+.-| .++.|..+++...- .. .++.......+.-+|+.||... .+.-.++.+...++.
T Consensus 113 ~~d~ygtq~~iElLRQ~i~~~g~------yd----------~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~ 176 (272)
T PF12775_consen 113 QPDKYGTQPPIELLRQLIDYGGF------YD----------RKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILN 176 (272)
T ss_dssp ---TTS--HHHHHHHHHHHCSEE------EC----------TTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE
T ss_pred CCCCCCCcCHHHHHHHHHHhcCc------cc----------CCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEE
Confidence 433323 34444444443210 00 0000011123345778887633 122334566778899
Q ss_pred ecCcCHHHHHHHHHHHhh
Q 002241 459 FIQPSVSRVVSRLKHICN 476 (948)
Q Consensus 459 F~~p~~~~l~~~L~~I~~ 476 (948)
+..|+.+.+..+...++.
T Consensus 177 ~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ----TCCHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHh
Confidence 999999988888777664
No 245
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.79 E-value=0.00016 Score=85.41 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=105.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHH----H-hh----hcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDV----V-QM----NSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~----~-~~----~sv~~~~kp~iLIIDE 379 (948)
..++|+|.+||||+++|+++.+.. +..++.+|+.... .+.+...+-.. + .. ...........|+|||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 578999999999999999998874 4578999988762 23333222000 0 00 0001123467899999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh-----h-hhccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL-----R-SLRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L-----r-~Lr~~ 453 (948)
|+.+.. ..+..|+.++........ . +.........||++++......+ + .|..+
T Consensus 237 i~~l~~---~~q~~ll~~l~~~~~~~~---~--------------~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~r 296 (463)
T TIGR01818 237 IGDMPL---DAQTRLLRVLADGEFYRV---G--------------GRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHR 296 (463)
T ss_pred hhhCCH---HHHHHHHHHHhcCcEEEC---C--------------CCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHH
Confidence 999854 567778888865321100 0 00012234568888775332111 1 12222
Q ss_pred e--EEEEecCcC--HHHHHHH----HHHHhhhcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 A--KVHVFIQPS--VSRVVSR----LKHICNNES---MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~--~iI~F~~p~--~~~l~~~----L~~I~~~Eg---i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
. ..|++++.. .+.+... |..++...+ ..++++++..|..+. .|++|..-|.++.++..
T Consensus 297 l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 297 LNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred hCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 2 234444332 2333333 344454444 468999999999975 79999999999887654
No 246
>PRK13695 putative NTPase; Provisional
Probab=97.73 E-value=0.00025 Score=72.63 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.++|+|++|+||||++..++.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 247
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.00043 Score=74.13 Aligned_cols=170 Identities=21% Similarity=0.234 Sum_probs=105.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-CC--cceecCCCCCChHHHHHHHHHHHhh------------------hccccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG-YH--VVEVNASDDRSSSTIENKILDVVQM------------------NSVMAD 369 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG-~~--viEiNaSd~rs~~~~~~~I~~~~~~------------------~sv~~~ 369 (948)
+.++.++|+-|+|||.++++++.-++ -. ++.+.+...... .+...|-..+.. ..+...
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~-~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDA-TLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHH-HHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 35899999999999999996655443 22 233443322221 111111111110 111235
Q ss_pred CCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEE-----EecCCCc
Q 002241 370 SRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVIC-----ICNDLYA 444 (948)
Q Consensus 370 ~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~-----icNDl~~ 444 (948)
.+|.++++||.+.+..+.-...+.|.++....... --|++ +|+++..
T Consensus 130 ~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~----------------------------l~ivL~Gqp~L~~~lr~ 181 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKL----------------------------LSIVLIGQPKLRPRLRL 181 (269)
T ss_pred CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCc----------------------------eeeeecCCcccchhhch
Confidence 67799999999988654333344444333221110 01222 3456777
Q ss_pred hhhhhhccceEE-EEecCcCHHHHHHHHHHHhhhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002241 445 PALRSLRQIAKV-HVFIQPSVSRVVSRLKHICNNESMK---TSSIALTTLAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 445 p~Lr~Lr~~~~i-I~F~~p~~~~l~~~L~~I~~~Egi~---id~~~L~~L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
+.++.+.+++.+ |...+.+.++...+|+..++.-+.. ++++++..|.+.+.| +=.+||.+--.+.
T Consensus 182 ~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al 250 (269)
T COG3267 182 PVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLAL 250 (269)
T ss_pred HHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHH
Confidence 888889988888 8888889888888888777665432 478999999999999 7778887765543
No 248
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=2.4e-05 Score=74.67 Aligned_cols=32 Identities=41% Similarity=0.827 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
+++|+||||+||||+|+.||+++|+.++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 58999999999999999999999988776543
No 249
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.71 E-value=0.0004 Score=78.71 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
-++||.|++|+||||++++++.-+
T Consensus 26 g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 26 GGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999876
No 250
>PRK07914 hypothetical protein; Reviewed
Probab=97.68 E-value=0.0027 Score=71.70 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=126.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-------hCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH-------CGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke-------lG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
..+.||+|.----..-....+.+. -.++++.+++.+... ..+.++. +.+++ +.+++|+|++...+
T Consensus 5 ~~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-----~~i~~~~-t~plF--~~rRlV~v~~~~~~ 76 (320)
T PRK07914 5 APLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST-----YELAELL-SPSLF--AEERVVVLEAAAEA 76 (320)
T ss_pred CceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH-----HHHHHhc-CCCCC--CCceEEEEeChHhc
Confidence 478999998665554444444332 134667777665533 2244443 44554 46789999987443
Q ss_pred cCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec-CCCchh-hhhhccc-eEEEEec
Q 002241 384 LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN-DLYAPA-LRSLRQI-AKVHVFI 460 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN-Dl~~p~-Lr~Lr~~-~~iI~F~ 460 (948)
. ....+.|.+++.... ...+ +|++++ +..... ...++.. +.++.|.
T Consensus 77 ~---~~~~~~l~~~l~~~~---------------------------~~t~-lil~~~~~~~~kk~~K~L~k~g~~~v~~~ 125 (320)
T PRK07914 77 G---KDAAALILSAAADLP---------------------------PGTV-LVVVHSGGGRAKALANQLRKLGAEVHPCA 125 (320)
T ss_pred c---HHHHHHHHHHHhCCC---------------------------CCeE-EEEEecCCcchhHHHHHHHHCCCEEEecC
Confidence 2 234455666654311 1112 444443 322222 2345545 3588888
Q ss_pred Cc-CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh-cCccccccccccceeccccccccHHHHH
Q 002241 461 QP-SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDK-KKEILNVMDIGSQVVGRKDMSRSAFDIW 538 (948)
Q Consensus 461 ~p-~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~-~~~~~~~~~i~~~~vg~kD~~~~lf~i~ 538 (948)
++ ...++...+...+.+.|+.++++++..|++.+++|+..+-+.|+-++. ..+.++.+++...+ + .-...++|+++
T Consensus 126 ~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v-~-~~~~~~vf~L~ 203 (320)
T PRK07914 126 RITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYH-S-GKAEVKGFDIA 203 (320)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHc-C-CCeechHHHHH
Confidence 88 999999999999999999999999999999999999999999998765 34556666666432 2 22344899999
Q ss_pred HHHHhcc
Q 002241 539 KEIFQKR 545 (948)
Q Consensus 539 ~~If~~~ 545 (948)
+.++..+
T Consensus 204 dAi~~g~ 210 (320)
T PRK07914 204 DKAVAGD 210 (320)
T ss_pred HHHHCCC
Confidence 9999765
No 251
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.67 E-value=0.00026 Score=77.05 Aligned_cols=83 Identities=19% Similarity=0.299 Sum_probs=50.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCC---cc----eecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYH---VV----EVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~---vi----EiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
-+|=|+|++||||...+++||+.+ |.. |. ..+....+..+..+..+.+.+.... ......++|+||+|
T Consensus 111 LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v--~~C~rslFIFDE~D 188 (344)
T KOG2170|consen 111 LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTV--QACQRSLFIFDEVD 188 (344)
T ss_pred eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHH--HhcCCceEEechhh
Confidence 344589999999999999999975 321 11 1222233333334444443332211 14577899999999
Q ss_pred cccCCChhHHHHHHHHHH
Q 002241 382 GALGDGKGAVEVILKMVS 399 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~ 399 (948)
.+.+ +.+++|--++.
T Consensus 189 Kmp~---gLld~lkpfLd 203 (344)
T KOG2170|consen 189 KLPP---GLLDVLKPFLD 203 (344)
T ss_pred hcCH---hHHHHHhhhhc
Confidence 9965 55555555544
No 252
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.67 E-value=0.00025 Score=83.65 Aligned_cols=179 Identities=16% Similarity=0.220 Sum_probs=102.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHH----Hh-----hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDV----VQ-----MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~----~~-----~~sv~~~~kp~iLIIDE 379 (948)
..+||+|++|+||+++|+++.... +..++.+|+..... ..+...+-.. +. ...........+|+|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEec
Confidence 579999999999999999997763 56899999987532 2222211000 00 00011123457999999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhh-----h-hccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALR-----S-LRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr-----~-Lr~~ 453 (948)
||.+.. ..+..|+.++........ . +......+..||+++|.......+ . |-.+
T Consensus 246 i~~l~~---~~q~~L~~~l~~~~~~~~---~--------------~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~ 305 (457)
T PRK11361 246 IGEMPL---VLQAKLLRILQEREFERI---G--------------GHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305 (457)
T ss_pred hhhCCH---HHHHHHHHHHhcCcEEeC---C--------------CCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHH
Confidence 999854 567788888865321100 0 000112345688887743221111 0 1111
Q ss_pred eEEEEecCcCHH----HHH----HHHHHHhhhcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 AKVHVFIQPSVS----RVV----SRLKHICNNES---MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~~iI~F~~p~~~----~l~----~~L~~I~~~Eg---i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
...+.+.-|+.. .+. ..|..++...+ +.++++++..|..+. .|++|..-|.++.++..
T Consensus 306 l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred hccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 112333333322 122 22344444333 358999999999875 79999999999877643
No 253
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.61 E-value=0.00018 Score=70.95 Aligned_cols=71 Identities=20% Similarity=0.361 Sum_probs=49.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC---CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY---HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~---~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..+||+|++||||+++|++|....+. .++.+++.+.. .+.++ ......|+|+|||.+..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~---------~~~l~------~a~~gtL~l~~i~~L~~--- 83 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP---------AELLE------QAKGGTLYLKNIDRLSP--- 83 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------HHHHH------HCTTSEEEEECGCCS-H---
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------HHHHH------HcCCCEEEECChHHCCH---
Confidence 67999999999999999999987654 44555554422 11111 12568999999999954
Q ss_pred hHHHHHHHHHHh
Q 002241 389 GAVEVILKMVSA 400 (948)
Q Consensus 389 ~~~~~Ll~li~~ 400 (948)
..+..|+.++..
T Consensus 84 ~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 84 EAQRRLLDLLKR 95 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 677788888864
No 254
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.61 E-value=0.00022 Score=85.48 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=78.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee-cCCCCC--ChHHHHHHHHHH--HhhhcccccCCCcEEEecCcccccCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV-NASDDR--SSSTIENKILDV--VQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi-NaSd~r--s~~~~~~~I~~~--~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
-++||.|+||+|||++|+++++...-.++.. ..++.. ....+++..... ++...+ ......+++|||+|.+..
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l-~~A~~Gil~iDEi~~l~~- 314 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGAL-VLADNGVCCIDEFDKMDD- 314 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccE-EecCCCEEEEechhhCCH-
Confidence 4899999999999999999999764322111 011110 011111110000 000111 123467999999999854
Q ss_pred ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc------------hhhhh-hccc
Q 002241 387 GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA------------PALRS-LRQI 453 (948)
Q Consensus 387 ~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~------------p~Lr~-Lr~~ 453 (948)
..+..|++.++.........+ .........-||++||..+. +.-.+ |.+|
T Consensus 315 --~~q~~L~e~me~~~i~i~k~G---------------~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRF 377 (509)
T smart00350 315 --SDRTAIHEAMEQQTISIAKAG---------------ITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRF 377 (509)
T ss_pred --HHHHHHHHHHhcCEEEEEeCC---------------EEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCce
Confidence 566777887764332110000 00012345678999996432 11122 3345
Q ss_pred eEEEEe-cCcCHHHHHHHHHHHhhh
Q 002241 454 AKVHVF-IQPSVSRVVSRLKHICNN 477 (948)
Q Consensus 454 ~~iI~F-~~p~~~~l~~~L~~I~~~ 477 (948)
..++.+ ..|+.+.-..++.+++..
T Consensus 378 dLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 378 DLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred eeEEEecCCCChHHHHHHHHHHHHh
Confidence 454433 677887777777776643
No 255
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00018 Score=89.28 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-C--CCcceecCCCC-------------CChHHHHHHHHHHHhhhcccccCCCc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC-G--YHVVEVNASDD-------------RSSSTIENKILDVVQMNSVMADSRPK 373 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel-G--~~viEiNaSd~-------------rs~~~~~~~I~~~~~~~sv~~~~kp~ 373 (948)
..-.+||.||.|+|||-||++||..+ | -.+|.|+.|.. ++. ..-+.+.+++. ....+
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~-e~gg~Lteavr------rrP~s 662 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGK-EEGGQLTEAVK------RRPYS 662 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccc-hhHHHHHHHHh------cCCce
Confidence 34679999999999999999999985 3 24666666641 111 12223444433 45678
Q ss_pred EEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc
Q 002241 374 CLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA 444 (948)
Q Consensus 374 iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~ 444 (948)
||+|||||.+- ....+.|+.++..++.. ..+|..+...+.-||+|+|....
T Consensus 663 VVLfdeIEkAh---~~v~n~llq~lD~Grlt-----------------Ds~Gr~Vd~kN~I~IMTsn~~~~ 713 (898)
T KOG1051|consen 663 VVLFEEIEKAH---PDVLNILLQLLDRGRLT-----------------DSHGREVDFKNAIFIMTSNVGSS 713 (898)
T ss_pred EEEEechhhcC---HHHHHHHHHHHhcCccc-----------------cCCCcEeeccceEEEEecccchH
Confidence 99999999874 35778888888765542 22333345567889999998654
No 256
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.57 E-value=0.00046 Score=80.95 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=103.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHh---h------hcccccCCCcEEEe
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQ---M------NSVMADSRPKCLVI 377 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~---~------~sv~~~~kp~iLII 377 (948)
....++|+|.+|+||+++|+++-... +..++.+|++.... ..+...+-.... . ...........|+|
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l 239 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEE
Confidence 34678899999999999999997654 46899999986532 333322211000 0 00011234678999
Q ss_pred cCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh--hc----
Q 002241 378 DEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS--LR---- 451 (948)
Q Consensus 378 DEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~--Lr---- 451 (948)
|||+.+.. ..+..|+..+........ . +.........||++++......+.. ++
T Consensus 240 dei~~l~~---~~q~~l~~~l~~~~~~~~---~--------------~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~ 299 (441)
T PRK10365 240 DEIGDISP---MMQVRLLRAIQEREVQRV---G--------------SNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred eccccCCH---HHHHHHHHHHccCcEEeC---C--------------CCceeeeceEEEEeCCCCHHHHHHcCCchHHHH
Confidence 99999854 566778888765321100 0 0001123345777665432222111 11
Q ss_pred cceEEEEecCcCHH----HHHHH----HHHHhhhcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHh
Q 002241 452 QIAKVHVFIQPSVS----RVVSR----LKHICNNES---MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDK 510 (948)
Q Consensus 452 ~~~~iI~F~~p~~~----~l~~~----L~~I~~~Eg---i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~ 510 (948)
.....+.+.-|+.. .+... |..++...+ ..++++++..|+.+. .|++|...|.++.++.
T Consensus 300 ~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred HHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 11122333333332 22222 333443333 348999999999987 8999999999998764
No 257
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.55 E-value=0.00018 Score=75.53 Aligned_cols=88 Identities=19% Similarity=0.268 Sum_probs=46.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC----CCcceecCCCCCCh----HH------HH-----HHHHHHHhhhcc-----c
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG----YHVVEVNASDDRSS----ST------IE-----NKILDVVQMNSV-----M 367 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG----~~viEiNaSd~rs~----~~------~~-----~~I~~~~~~~sv-----~ 367 (948)
.++||.||||+|||++|+.++.-+- -+.+|+...-.... .. ++ ......+..... .
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGei 102 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEI 102 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CG
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHH
Confidence 5899999999999999999997552 12222222110000 00 00 001111111111 1
Q ss_pred ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhh
Q 002241 368 ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAER 402 (948)
Q Consensus 368 ~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~ 402 (948)
......||++||+--+ ....++.|.+-++...
T Consensus 103 slAh~GVLflDE~~ef---~~~vld~Lr~ple~g~ 134 (206)
T PF01078_consen 103 SLAHRGVLFLDELNEF---DRSVLDALRQPLEDGE 134 (206)
T ss_dssp GGGTTSEEEECETTTS----HHHHHHHHHHHHHSB
T ss_pred HHhcCCEEEechhhhc---CHHHHHHHHHHHHCCe
Confidence 2345689999999766 4578888888887643
No 258
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.53 E-value=0.0012 Score=86.71 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+++-|+||+|+||||||+++++.+.
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 47899999999999999999988764
No 259
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.46 E-value=0.0019 Score=82.69 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=91.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCC-CCCChHHHHHHHHHHHhh-------------------------
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS-DDRSSSTIENKILDVVQM------------------------- 363 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaS-d~rs~~~~~~~I~~~~~~------------------------- 363 (948)
..++.+++||+|.||||++.-.+.+.+ .+..++.. .+.....|...+..++..
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLF 109 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHH
Confidence 458999999999999999999888877 67666553 223333333333333310
Q ss_pred ----hcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEe
Q 002241 364 ----NSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICIC 439 (948)
Q Consensus 364 ----~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ic 439 (948)
..+.....|.+|||||++.+.. ......|..++.... ...-+|+++
T Consensus 110 ~~~~~~l~~~~~~~~lvlDD~h~~~~--~~~~~~l~~l~~~~~----------------------------~~~~lv~~s 159 (903)
T PRK04841 110 AQLFIELADWHQPLYLVIDDYHLITN--PEIHEAMRFFLRHQP----------------------------ENLTLVVLS 159 (903)
T ss_pred HHHHHHHhcCCCCEEEEEeCcCcCCC--hHHHHHHHHHHHhCC----------------------------CCeEEEEEe
Confidence 0001126789999999998732 222333333443211 112233343
Q ss_pred cCCCchhhhhhccceEEEEec----CcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHH
Q 002241 440 NDLYAPALRSLRQIAKVHVFI----QPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSC 501 (948)
Q Consensus 440 NDl~~p~Lr~Lr~~~~iI~F~----~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~a 501 (948)
-......+..++.....+.+. +-+.++....+... .|..++++.+..|.+.|+|-.-..
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATAL 222 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHH
Confidence 332111123333333334444 55777777776543 456789999999999999987554
No 260
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.43 E-value=0.00091 Score=68.62 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=47.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHh--------------hhc-ccc-cCCCcEE
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQ--------------MNS-VMA-DSRPKCL 375 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~--------------~~s-v~~-~~kp~iL 375 (948)
..+|++||||+||||+|..+|.+++..++.+..... ..+....+|....+ ... +.. ..++.+|
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~V 80 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCV 80 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEE
Confidence 368999999999999999999999888888776543 23344444422211 000 011 2346789
Q ss_pred EecCccccc
Q 002241 376 VIDEIDGAL 384 (948)
Q Consensus 376 IIDEID~l~ 384 (948)
+||-+-.+.
T Consensus 81 lID~Lt~~~ 89 (170)
T PRK05800 81 LVDCLTTWV 89 (170)
T ss_pred EehhHHHHH
Confidence 999887663
No 261
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=97.42 E-value=0.016 Score=65.63 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=123.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC-CCcce--ecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG-YHVVE--VNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG-~~viE--iNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
..++.||||.-=--.--.+..+.+.+. -.. + +...+ .. .+.+.+.+.+.++++ .+++|+|.+....
T Consensus 15 l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-~~~~~~~~----~~-~~~i~~~~~t~plF~--~~rlViv~~~~~~--- 83 (328)
T PRK08487 15 LPNAFLLYGEDEFQIELYAKKISEKFKPENE-LKTLYFDE----YD-FEQAKDFLSQSSLFG--GKNLLIIKLDKKI--- 83 (328)
T ss_pred CCceEEEecCchhHHHHHHHHHHHHhcCchH-hhhhchhh----cc-HHHHHHHHhcccccC--CceEEEEeccccc---
Confidence 458999999654444444444444431 111 2 22221 11 244556666666653 5578888865433
Q ss_pred ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEe-cCCCch-hhhhh-cc--ceEEEEecC
Q 002241 387 GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICIC-NDLYAP-ALRSL-RQ--IAKVHVFIQ 461 (948)
Q Consensus 387 ~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ic-NDl~~p-~Lr~L-r~--~~~iI~F~~ 461 (948)
....++.|++.+.... ...+|++| ++.... .++.+ .. .+..+.|.+
T Consensus 84 ~~~~~~~L~~~l~~~~-----------------------------~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~ 134 (328)
T PRK08487 84 PKKELKLLIELCEKNS-----------------------------DNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFK 134 (328)
T ss_pred CHHHHHHHHHHHhcCC-----------------------------CCEEEEEecCCcchhHHHHHHhccCCCceEEEeeC
Confidence 1234566666664311 12244443 333221 22222 11 256788889
Q ss_pred cCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCccccccccccceeccccccccHHHHHHHH
Q 002241 462 PSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEI 541 (948)
Q Consensus 462 p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~I 541 (948)
++..++...+...+.+.|+.++++++..|++.+++|+..+.|.|+-++.=...++.+++...+ + .....++|++++.+
T Consensus 135 ~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v-~-~~~e~~vF~l~dai 212 (328)
T PRK08487 135 PNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELV-F-GLGSVSFEDFFEKL 212 (328)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHh-c-ccccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877644467777776432 2 22345899999999
Q ss_pred Hhcc
Q 002241 542 FQKR 545 (948)
Q Consensus 542 f~~~ 545 (948)
+..+
T Consensus 213 ~~g~ 216 (328)
T PRK08487 213 LNKK 216 (328)
T ss_pred HCCC
Confidence 8764
No 262
>PRK04132 replication factor C small subunit; Provisional
Probab=97.41 E-value=8.3e-05 Score=92.58 Aligned_cols=33 Identities=24% Similarity=0.630 Sum_probs=30.0
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHh
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQ 227 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~ 227 (948)
.+.+|++||||++|.|++|++..++.|..|++.
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~ 37 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT 37 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHc
Confidence 356899999999999999999999999998884
No 263
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.41 E-value=0.00034 Score=73.58 Aligned_cols=40 Identities=30% Similarity=0.536 Sum_probs=34.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASD 346 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd 346 (948)
|.|...+.+|+||||+|||+++..+|.+ .|..++.+....
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 6678899999999999999999988865 377888888754
No 264
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.40 E-value=0.00014 Score=73.62 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
....++|+||||+||||+|+.||+.+|+.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34789999999999999999999999988774
No 265
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.40 E-value=0.00056 Score=79.83 Aligned_cols=179 Identities=17% Similarity=0.165 Sum_probs=107.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHH----HHhhh-----cccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILD----VVQMN-----SVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~----~~~~~-----sv~~~~kp~iLIIDE 379 (948)
-.+||+|++||||-.+|++|=+.- +-.+|-+||...-. ..++..+-. ++.-. ..+.......||+||
T Consensus 165 a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDE 243 (464)
T COG2204 165 ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDE 243 (464)
T ss_pred CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeec
Confidence 369999999999999999998874 56899999975422 122211100 11000 011133467899999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh--hc----cc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS--LR----QI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~--Lr----~~ 453 (948)
|..++- ..+..|+..+...... .+. +.+.......||+.+|--....... +| -+
T Consensus 244 I~~mpl---~~Q~kLLRvLqe~~~~---rvG--------------~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyR 303 (464)
T COG2204 244 IGEMPL---ELQVKLLRVLQEREFE---RVG--------------GNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYR 303 (464)
T ss_pred cccCCH---HHHHHHHHHHHcCeeE---ecC--------------CCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhh
Confidence 998854 5677788888754321 010 1112244567888888432211111 11 12
Q ss_pred eEEEEecCcCHH-------H-HHHHHHHHhhhcCC---CCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 454 AKVHVFIQPSVS-------R-VVSRLKHICNNESM---KTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~~iI~F~~p~~~-------~-l~~~L~~I~~~Egi---~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
-.++.+.-|+.. . ....|+.+|...|. .++++++..|..+. -|++|..-|.++.++.-
T Consensus 304 LnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 304 LNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred hccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 233444334332 2 22345666766654 67899999999874 79999999999988754
No 266
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.36 E-value=0.00014 Score=74.24 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC---cceecCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH---VVEVNASDD 347 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~---viEiNaSd~ 347 (948)
.++++|+|++|+|||++++.++..+.-. ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4899999999999999999887765211 666665544
No 267
>PRK04296 thymidine kinase; Provisional
Probab=97.34 E-value=0.0011 Score=69.25 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
.+.|++||+|+||||++.-+|..+ |..++.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 588999999999999998777654 667776654
No 268
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.0023 Score=67.54 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.+..+.++|+||+|+|||||++.|++.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 445689999999999999999999754
No 269
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.29 E-value=0.00015 Score=71.18 Aligned_cols=29 Identities=52% Similarity=0.926 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+++|+||||+||||+|+.+++++++.++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 48999999999999999999999955443
No 270
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.27 E-value=0.0022 Score=70.51 Aligned_cols=83 Identities=23% Similarity=0.411 Sum_probs=65.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
-++||.|..|+||+|+++..|--++++++++..+..-+...+++.++.++....+ .+++.|++|+|-+-. ...++
T Consensus 32 Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~--~~~~~vfll~d~qi~---~~~fL 106 (268)
T PF12780_consen 32 GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGI--KGKPTVFLLTDSQIV---DESFL 106 (268)
T ss_dssp EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHC--S-S-EEEEEECCCSS---SCHHH
T ss_pred CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhc--cCCCeEEEecCcccc---hHhHH
Confidence 5789999999999999999999999999999988777777888888888776554 568999999998754 23566
Q ss_pred HHHHHHHH
Q 002241 392 EVILKMVS 399 (948)
Q Consensus 392 ~~Ll~li~ 399 (948)
+.+-.++.
T Consensus 107 e~in~LL~ 114 (268)
T PF12780_consen 107 EDINSLLS 114 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666664
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.25 E-value=0.0011 Score=68.18 Aligned_cols=32 Identities=38% Similarity=0.337 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
++|++||||+|||+++.-+|.+ .|..++.+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 4789999999999999877664 3666666654
No 272
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00025 Score=72.49 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
-++++||||+||||+|+.|++.+|+.++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48899999999999999999999999887764
No 273
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.019 Score=65.36 Aligned_cols=230 Identities=13% Similarity=0.100 Sum_probs=140.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC---CCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG---YHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG---~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
..++.||||+-=.=.-..+..+++.++ +.+..+...+... -...+.+.+.+.++++.. .+++|........
T Consensus 15 ~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~lF~~~--~~v~l~~~~~~~~- 88 (334)
T COG1466 15 LMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDSEL---DWADLLSELESPSLFGEK--RLVVLKNAEKKPN- 88 (334)
T ss_pred CccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhcccccC---CHHHHHHHhhccccccCC--eeEEEECCCCCcC-
Confidence 458999999965445555556666655 4444444332221 122344455556666443 7888877766542
Q ss_pred ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch--hhhhhccc--eEEEEecCc
Q 002241 387 GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP--ALRSLRQI--AKVHVFIQP 462 (948)
Q Consensus 387 ~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p--~Lr~Lr~~--~~iI~F~~p 462 (948)
......+...+.... ....-+|..++++... ....+... +.++.+.++
T Consensus 89 -~~~~~~l~~~~~~~p---------------------------~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~ 140 (334)
T COG1466 89 -KDKNLALLELAALLP---------------------------STDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPL 140 (334)
T ss_pred -chhHHHHHHHHcCCC---------------------------CCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCC
Confidence 122223333332100 0112233344444321 11223333 558888999
Q ss_pred CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhcC--ccccccccccceeccccccccHHHHHHH
Q 002241 463 SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKKK--EILNVMDIGSQVVGRKDMSRSAFDIWKE 540 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~--~~~~~~~i~~~~vg~kD~~~~lf~i~~~ 540 (948)
+..++.+.+...+...|+.++++++..|++..+||++.+.+.++.++.-. +.++.+++...+ + +....+.|+.++.
T Consensus 141 ~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v-~-~~~~~~~f~l~da 218 (334)
T COG1466 141 DEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVV-S-DVAEFNIFDLADA 218 (334)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHH-h-ccccCCHHHHHHH
Confidence 99999999999999999999999999999999999999988888776432 257767776433 2 2334478999999
Q ss_pred HHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHhh
Q 002241 541 IFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENIL 589 (948)
Q Consensus 541 If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~eNyl 589 (948)
++..+.. ..+.-+..++....++=.++..+...|.
T Consensus 219 il~g~~~--------------~a~~~l~~L~~~ge~p~~il~~l~~~f~ 253 (334)
T COG1466 219 LLKGDVK--------------KALRLLRDLLLEGEEPLKLLAALTRQFR 253 (334)
T ss_pred HHCCCHH--------------HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 9987632 2334445555544444566666666664
No 274
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.23 E-value=0.0013 Score=70.08 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=33.8
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
.|.+...+.+|+||||+|||+++..+|.++ |..++.+..-
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 356778999999999999999999988753 7888888775
No 275
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.00025 Score=70.92 Aligned_cols=29 Identities=45% Similarity=0.706 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.+-++|||||||||+|+.||+++|+.++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 46799999999999999999999998763
No 276
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00027 Score=71.50 Aligned_cols=31 Identities=39% Similarity=0.814 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
.++++|.||+||||++..|+ ++||.++++|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~e 32 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNE 32 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHHH
Confidence 57899999999999999999 99999999873
No 277
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.13 E-value=0.0029 Score=71.25 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=49.3
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCC---------------------hHHHHHHHHHHH
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRS---------------------SSTIENKILDVV 361 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs---------------------~~~~~~~I~~~~ 361 (948)
-|-|..++.+|+||||+||||||..+|.+ .|-.++.|++-.... .+.....+..
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~-- 127 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADS-- 127 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHH--
Confidence 36788999999999999999999977754 366777776632111 1111111111
Q ss_pred hhhcccccCCCcEEEecCcccccC
Q 002241 362 QMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 362 ~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
+.....+.+||||-|-.+..
T Consensus 128 ----li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 128 ----LVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred ----HHhccCCCEEEEcchHhhcc
Confidence 11245789999999987763
No 278
>PRK03839 putative kinase; Provisional
Probab=97.13 E-value=0.00034 Score=71.91 Aligned_cols=31 Identities=35% Similarity=0.789 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
.++|.|+||+||||+++.||+.+|+.++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999999886653
No 279
>PRK06762 hypothetical protein; Provisional
Probab=97.12 E-value=0.00043 Score=70.08 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
+.+++|+|+||+||||+|+.+++++|..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 368999999999999999999999976666665
No 280
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.12 E-value=0.0012 Score=73.94 Aligned_cols=161 Identities=18% Similarity=0.184 Sum_probs=82.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCC-CChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccC-CCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD-RSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG-DGK 388 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~-rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~-~~~ 388 (948)
.++++|+||+|+|||++|..||++++..++..++--. +..+....+... .....-.--+||.++---. +..
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~-------~E~~gv~hhlid~~~~~~~~s~~ 76 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTA-------EERAGVPHHLIDILDPTESYSVA 76 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCH-------HHHcCccEEeecccChhhcccHH
Confidence 3789999999999999999999999876554433110 000000000000 0001123455665542110 112
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHH
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVV 468 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~ 468 (948)
.+.+...+.++... ..-+.|||+=...+|-.++ .. . +...++....+.
T Consensus 77 ~f~~~a~~~i~~i~--------------------------~~gk~pIlvGGt~~Y~~al---~~-g--~~~~p~~~~~~r 124 (307)
T PRK00091 77 DFQRDALAAIADIL--------------------------ARGKLPILVGGTGLYIKAL---LE-G--LSPLPPADPELR 124 (307)
T ss_pred HHHHHHHHHHHHHH--------------------------hCCCCEEEECcHHHHHHHh---cc-C--CCCCCCCCHHHH
Confidence 33333333333211 1123677764444443332 11 1 113456667777
Q ss_pred HHHHHHhhhcCC--------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCc
Q 002241 469 SRLKHICNNESM--------KTSSIALTTLAEYTECDIRSCLNTLQFLDKKKE 513 (948)
Q Consensus 469 ~~L~~I~~~Egi--------~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~ 513 (948)
.+|...+...|. .+|+.....| ..+|.|..+..|+.+...+.
T Consensus 125 ~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i---~~~d~~Ri~RAlEi~~~tG~ 174 (307)
T PRK00091 125 AELEALAAEEGWEALHAELAEIDPEAAARI---HPNDPQRIIRALEVYELTGK 174 (307)
T ss_pred HHHHHHHHhcCHHHHHHHHHhcCHHHHhhc---CCCCCchhHHHHHHHHHHCC
Confidence 788776666553 1233322222 46899999999998765543
No 281
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.08 E-value=0.0026 Score=71.50 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=31.3
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
-|-|..++++|+||||+||||||..++.++ |-.++.|++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 367889999999999999999988666543 666776655
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.08 E-value=0.0019 Score=67.78 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=46.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCChHHHHHHH-------HHHHhhhccc--c----cCCCcEE
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRSSSTIENKI-------LDVVQMNSVM--A----DSRPKCL 375 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs~~~~~~~I-------~~~~~~~sv~--~----~~kp~iL 375 (948)
++.+|.|||||||||++..+++. .|+.|+-+-.+. .....+.+.+ ..++...... . ..+..+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 78999999999999999988765 377777775542 2222232221 1111100000 0 2345899
Q ss_pred EecCcccccCCChhHHHHHHHHH
Q 002241 376 VIDEIDGALGDGKGAVEVILKMV 398 (948)
Q Consensus 376 IIDEID~l~~~~~~~~~~Ll~li 398 (948)
||||+..+.. ..+..|+..+
T Consensus 98 iVDEasmv~~---~~~~~ll~~~ 117 (196)
T PF13604_consen 98 IVDEASMVDS---RQLARLLRLA 117 (196)
T ss_dssp EESSGGG-BH---HHHHHHHHHS
T ss_pred EEecccccCH---HHHHHHHHHH
Confidence 9999977632 3444455444
No 283
>PF14516 AAA_35: AAA-like domain
Probab=97.07 E-value=0.011 Score=67.17 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=91.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCC-----hHHHHHHHHH----HHh----------------
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRS-----SSTIENKILD----VVQ---------------- 362 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs-----~~~~~~~I~~----~~~---------------- 362 (948)
+..+.|.||..+|||||...+++++ ||.++.++.....+ .+.+...+-. .+.
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4789999999999999999887654 89999988876432 1222211111 110
Q ss_pred --------hhcccccCCCcEEEecCcccccCCC---hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccC
Q 002241 363 --------MNSVMADSRPKCLVIDEIDGALGDG---KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASL 431 (948)
Q Consensus 363 --------~~sv~~~~kp~iLIIDEID~l~~~~---~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~ 431 (948)
..-+....+|-||+|||||.++... ..+...|..+.+.....+.. ..
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~----------------------~~ 168 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW----------------------QK 168 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc----------------------ce
Confidence 0001123678999999999998643 23333333333321110000 00
Q ss_pred CCcEEEEecCCCch---hhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCH
Q 002241 432 LRPVICICNDLYAP---ALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDI 498 (948)
Q Consensus 432 ~rPII~icNDl~~p---~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDI 498 (948)
.+-+++-....+.. .-.|+ .++..|.+..-+.+++...++ +.+...+...++.|...++|--
T Consensus 169 L~li~~~~t~~~~~~~~~~SPF-NIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 169 LRLILAGSTEDYIILDINQSPF-NIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHP 233 (331)
T ss_pred EEEEEecCcccccccCCCCCCc-ccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCH
Confidence 01111111111110 11222 466677777778888766554 4567788888999999999964
No 284
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.011 Score=63.28 Aligned_cols=152 Identities=13% Similarity=-0.004 Sum_probs=98.8
Q ss_pred CceEEEEcCCC-CcHHHHHHHHHHHhCC---------CcceecCC-------CCCChHHHHHHHHHHHhhhcccccCCCc
Q 002241 311 QKVLLLCGPPG-LGKTTLAHVAAKHCGY---------HVVEVNAS-------DDRSSSTIENKILDVVQMNSVMADSRPK 373 (948)
Q Consensus 311 ~k~LLL~GPPG-tGKTTLA~~lAkelG~---------~viEiNaS-------d~rs~~~~~~~I~~~~~~~sv~~~~kp~ 373 (948)
....||.|..+ .||..++..+++.+-. ++..+... ..-+.+.+++.+ ..+...+ ..++.+
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~-~~l~~~p--~~g~~K 91 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQ-DFLSKTS--AISGYK 91 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHH-HHHhhCc--ccCCcE
Confidence 36899999998 9999999988887632 23333221 112334454432 2332222 246889
Q ss_pred EEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccc
Q 002241 374 CLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQI 453 (948)
Q Consensus 374 iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~ 453 (948)
|+||+++|.+.. .+.++|+++++.... +.-+|++|.+.. ..+..+|++
T Consensus 92 ViII~~ae~mt~---~AANALLKtLEEPP~----------------------------~t~fILit~~~~-~LLpTIrSR 139 (263)
T PRK06581 92 VAIIYSAELMNL---NAANSCLKILEDAPK----------------------------NSYIFLITSRAA-SIISTIRSR 139 (263)
T ss_pred EEEEechHHhCH---HHHHHHHHhhcCCCC----------------------------CeEEEEEeCChh-hCchhHhhc
Confidence 999999999954 788999999986432 234677777654 356678999
Q ss_pred eEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHH
Q 002241 454 AKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRS 500 (948)
Q Consensus 454 ~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~ 500 (948)
|..+.|..|......+........ -.+...+..|.+.+.-|.-.
T Consensus 140 Cq~i~~~~p~~~~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~ 183 (263)
T PRK06581 140 CFKINVRSSILHAYNELYSQFIQP---IADNKTLDFINRFTTKDREL 183 (263)
T ss_pred eEEEeCCCCCHHHHHHHHHHhccc---ccccHHHHHHHHHhhhhHHH
Confidence 999999999887776665544432 12344466666655444443
No 285
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.07 E-value=0.0062 Score=69.10 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
++.+|++||+|+||||++++|+.+..
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 286
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.07 E-value=0.0033 Score=67.51 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=32.4
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNAS 345 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaS 345 (948)
.|-|...+++++||||+|||+++..++.+ .|..++.+...
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 36788899999999999999999998765 36666666653
No 287
>PRK13947 shikimate kinase; Provisional
Probab=97.06 E-value=0.00049 Score=69.95 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
.++|.|+||+||||+++.||+.+|+.++..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999876543
No 288
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.04 E-value=0.0031 Score=74.35 Aligned_cols=77 Identities=29% Similarity=0.432 Sum_probs=50.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHH---------------hhhcccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVV---------------QMNSVMA 368 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~---------------~~~sv~~ 368 (948)
|-+...++||+||||+||||++..+|..+ |..++++...+ +...+..+....- .......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee--s~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE--SASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc--cHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 56777899999999999999999888764 77888887643 2222222111100 0000012
Q ss_pred cCCCcEEEecCcccccC
Q 002241 369 DSRPKCLVIDEIDGALG 385 (948)
Q Consensus 369 ~~kp~iLIIDEID~l~~ 385 (948)
..++.+||||+|..+..
T Consensus 154 ~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYS 170 (446)
T ss_pred hhCCCEEEEechhhhcc
Confidence 35789999999987754
No 289
>PRK00625 shikimate kinase; Provisional
Probab=97.02 E-value=0.00053 Score=70.53 Aligned_cols=32 Identities=28% Similarity=0.577 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
.++|+|.||+||||+++.+|+++|+.++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 48999999999999999999999998887643
No 290
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.02 E-value=0.0018 Score=74.26 Aligned_cols=29 Identities=38% Similarity=0.458 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
+.+++|+|+||+|+|||.|.-.....+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 45699999999999999999999887643
No 291
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.02 E-value=0.0011 Score=78.99 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=49.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCChH----------HHHH----HHHH-HHhhhc-----c
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRSSS----------TIEN----KILD-VVQMNS-----V 366 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs~~----------~~~~----~I~~-~~~~~s-----v 366 (948)
..+++|.||||+||||+|+.++..+ +-..+|........+. -+.. .... .+.... .
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~ 290 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGE 290 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhh
Confidence 3689999999999999999999754 2223333321110000 0000 0000 000000 0
Q ss_pred cccCCCcEEEecCcccccCCChhHHHHHHHHHHhh
Q 002241 367 MADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAE 401 (948)
Q Consensus 367 ~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~ 401 (948)
.......+|+||||+.+. ...++.|+..++..
T Consensus 291 i~lA~~GvLfLDEi~e~~---~~~~~~L~~~LE~~ 322 (499)
T TIGR00368 291 ISLAHNGVLFLDELPEFK---RSVLDALREPIEDG 322 (499)
T ss_pred hhccCCCeEecCChhhCC---HHHHHHHHHHHHcC
Confidence 112345799999999873 46778888888654
No 292
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.0039 Score=64.92 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=95.7
Q ss_pred HHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccc
Q 002241 330 VAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKE 409 (948)
Q Consensus 330 ~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~ 409 (948)
.+..+++.+-+.+=..+..+.+.+++.+..+.... ...+ +||+++|.+. ..+.++|+++++....
T Consensus 19 ~l~~~~~~~~~~~f~~~~i~Vd~iReii~~~~~~~-----~~~k-~iI~~a~~l~---~~A~NaLLK~LEEPp~------ 83 (206)
T PRK08485 19 ELINEFGKKNLRFFIKEEFKIEDAKEVIAEAYIAE-----SEEK-IIVIAAPSYG---IEAQNALLKILEEPPK------ 83 (206)
T ss_pred HHHHhcCCCceEEECCCCCCHHHHHHHHHHHhhCC-----CCcE-EEEEchHhhC---HHHHHHHHHHhcCCCC------
Confidence 34445565555544444566677776655544321 2233 4578999884 4788999999986432
Q ss_pred cccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEE-------------EEecCcCHHHHHHHHHHHhh
Q 002241 410 NVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKV-------------HVFIQPSVSRVVSRLKHICN 476 (948)
Q Consensus 410 ~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~i-------------I~F~~p~~~~l~~~L~~I~~ 476 (948)
+.-+|++|.+... .+..++++|.. +.|.+.+..++...|.. +.
T Consensus 84 ----------------------~~~fiL~t~~~~~-llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ 139 (206)
T PRK08485 84 ----------------------NICFIIVAKSKNL-LLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LE 139 (206)
T ss_pred ----------------------CeEEEEEeCChHh-CchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HH
Confidence 2336777776543 45667888886 56789999999999999 78
Q ss_pred hcCCCCCHHHHHHHHHHccCCHHHHHH
Q 002241 477 NESMKTSSIALTTLAEYTECDIRSCLN 503 (948)
Q Consensus 477 ~Egi~id~~~L~~L~e~s~GDIR~aIn 503 (948)
+|++....+++..|+..+.|-+|.++.
T Consensus 140 ke~~~~~~ea~~lIa~la~~s~r~~l~ 166 (206)
T PRK08485 140 KENKLSKEELKELIESLLKECVKYKIP 166 (206)
T ss_pred HcccccHHHHHHHHHHHHHHHHHHHcC
Confidence 889988899999999999999999864
No 293
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.01 E-value=0.0026 Score=73.31 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=45.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH----hCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH----CGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke----lG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
.-++++.||+|||||+++.+++.+ .| -.+ +...+-..+.. ..+..-.+..+|+|||+..+.-.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~------T~a~Lf~~L~~----~~lg~v~~~DlLI~DEvgylp~~ 275 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTI------TVAKLFYNIST----RQIGLVGRWDVVAFDEVATLKFA 275 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcC------cHHHHHHHHHH----HHHhhhccCCEEEEEcCCCCcCC
Confidence 368999999999999999998876 24 111 22222222211 11112467899999999986543
Q ss_pred C-hhHHHHHHHHHH
Q 002241 387 G-KGAVEVILKMVS 399 (948)
Q Consensus 387 ~-~~~~~~Ll~li~ 399 (948)
. +..+..|-..+.
T Consensus 276 ~~~~~v~imK~yMe 289 (449)
T TIGR02688 276 KPKELIGILKNYME 289 (449)
T ss_pred chHHHHHHHHHHHH
Confidence 2 334444444444
No 294
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.00 E-value=0.0008 Score=71.70 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk 333 (948)
..+||||+||+||||+|+.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 6799999999999999999974
No 295
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.00051 Score=67.76 Aligned_cols=33 Identities=36% Similarity=0.648 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
...||++|-|||||||++..||...|+..++|.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 367999999999999999999999999887764
No 296
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.00 E-value=0.00086 Score=64.92 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
-+|-|+||||||||.+++.||+++
T Consensus 54 LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHH
Confidence 566699999999999999999984
No 297
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.99 E-value=0.00067 Score=69.59 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
++++|+||||+||||+|+.++++++..++.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 6899999999999999999999987665543
No 298
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.99 E-value=0.00052 Score=70.52 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=25.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+++|+||||+||||+|+.||+++|+..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999999864443
No 299
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.017 Score=60.19 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+++++|+||+|+|||||++.|.++.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4899999999999999999998875
No 300
>PRK14531 adenylate kinase; Provisional
Probab=96.98 E-value=0.00067 Score=70.18 Aligned_cols=29 Identities=38% Similarity=0.555 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
+.++|+||||+||||+++.||+.+|+..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i 31 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL 31 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 46899999999999999999999987654
No 301
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.97 E-value=0.0026 Score=65.16 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=47.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhh--------------c-ccccCCCcEEEe
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMN--------------S-VMADSRPKCLVI 377 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~--------------s-v~~~~kp~iLII 377 (948)
++|++||+|+|||++|..+|...|-+++++..+... ...++.+|....+.. . +.....+.+|+|
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~-d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLI 79 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF-DDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLI 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC-CHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEE
Confidence 368999999999999999998878788888554333 334555554432210 0 111124678999
Q ss_pred cCccccc
Q 002241 378 DEIDGAL 384 (948)
Q Consensus 378 DEID~l~ 384 (948)
|-+.++.
T Consensus 80 Dclt~~~ 86 (169)
T cd00544 80 DCLTLWV 86 (169)
T ss_pred EcHhHHH
Confidence 9887664
No 302
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.95 E-value=0.0039 Score=71.76 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=47.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHH---h------------hhcccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVV---Q------------MNSVMA 368 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~---~------------~~sv~~ 368 (948)
|.+...++||+|+||+||||++..+|.++ |..++.+...+ +...+..+....- . ......
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE--s~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE--SPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc--CHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 45667899999999999999999888754 45777776532 2222221111000 0 000011
Q ss_pred cCCCcEEEecCccccc
Q 002241 369 DSRPKCLVIDEIDGAL 384 (948)
Q Consensus 369 ~~kp~iLIIDEID~l~ 384 (948)
..++.+||||+|..+.
T Consensus 156 ~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 156 ELKPDLVIIDSIQTVY 171 (372)
T ss_pred hcCCcEEEEcchHHhh
Confidence 3578999999998775
No 303
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.95 E-value=0.0052 Score=64.68 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk 333 (948)
++++|+||.|+||||+.+.++-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998883
No 304
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.95 E-value=0.0035 Score=63.25 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
-.++|+||+|||||||.+++|.-.
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 468999999999999999999753
No 305
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.95 E-value=0.0027 Score=66.81 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=39.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
-+++|.|+-|+||||..+.|+.++-.+. ++ +...++ ....+ . ..-||.|||++++.....+.+
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~~d~--~~--~~~~kd-~~~~l----~--------~~~iveldEl~~~~k~~~~~l 115 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYFSDS--IN--DFDDKD-FLEQL----Q--------GKWIVELDELDGLSKKDVEAL 115 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhccCc--cc--cCCCcH-HHHHH----H--------HhHheeHHHHhhcchhhHHHH
Confidence 5899999999999999999987721111 11 111222 21111 1 125789999999864333333
Q ss_pred HHH
Q 002241 392 EVI 394 (948)
Q Consensus 392 ~~L 394 (948)
+.+
T Consensus 116 K~~ 118 (198)
T PF05272_consen 116 KSF 118 (198)
T ss_pred HHH
Confidence 333
No 306
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.94 E-value=0.00071 Score=69.56 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++++|.||||+||||+++.+|+.+|+..+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 3689999999999999999999999876543
No 307
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.94 E-value=0.00065 Score=66.75 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
+++|+|+||+||||+|+.||+++|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 4789999999999999999999998877665
No 308
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.93 E-value=0.0072 Score=64.96 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNa 344 (948)
|-+....++|+|+||+|||+++..+|.++ |..++.+..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 56677899999999999999988766543 788776664
No 309
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0057 Score=73.17 Aligned_cols=169 Identities=22% Similarity=0.192 Sum_probs=98.3
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHH--HHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSST--IENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~--~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
.+....+.++++||||+|||++++++|.+ +.....+++....++.. -...+...+.... ...|.++++||+|.+
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~ii~~d~~~~~ 88 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAE---KLAPSIIFIDEIDAL 88 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHH---HhCCCeEeechhhhc
Confidence 34556789999999999999999999999 54446667666555432 2333434333322 345699999999999
Q ss_pred cCCChh----HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEe
Q 002241 384 LGDGKG----AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVF 459 (948)
Q Consensus 384 ~~~~~~----~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F 459 (948)
...... ........+..... ... ... ......+++| +..++.++...++...+.+
T Consensus 89 ~~~~~~~~~~~~~~v~~~l~~~~d----~~~----------~~~-v~~~~~~~~~------~~~~~a~~~~~~~~~~~~~ 147 (494)
T COG0464 89 APKRSSDQGEVERRVVAQLLALMD----GLK----------RGQ-VIVIGATNRP------DGLDPAKRRPGRFDREIEV 147 (494)
T ss_pred ccCccccccchhhHHHHHHHHhcc----ccc----------CCc-eEEEeecCCc------cccChhHhCccccceeeec
Confidence 764332 11111111111100 000 000 0001122233 3345677777778888999
Q ss_pred cCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHH
Q 002241 460 IQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRS 500 (948)
Q Consensus 460 ~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~ 500 (948)
..+.......++........+ .++..+..++..+.|....
T Consensus 148 ~~~~~~~~~ei~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~ 187 (494)
T COG0464 148 NLPDEAGRLEILQIHTRLMFL-GPPGTGKTLAARTVGKSGA 187 (494)
T ss_pred CCCCHHHHHHHHHHHHhcCCC-cccccHHHHHHhcCCccHH
Confidence 989888777777655544333 2256777777776654433
No 310
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.93 E-value=0.0017 Score=70.70 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
..-++|.||+|+|||||++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 467999999999999999999987643
No 311
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=96.93 E-value=0.0037 Score=63.49 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=78.0
Q ss_pred HHHHHhhhcccccCCCcEEEecCcccccC-CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcE
Q 002241 357 ILDVVQMNSVMADSRPKCLVIDEIDGALG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPV 435 (948)
Q Consensus 357 I~~~~~~~sv~~~~kp~iLIIDEID~l~~-~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPI 435 (948)
+.+.+.+.+++ +..++|+|.+...+.. .....++.|.+.+... ...+.+
T Consensus 45 l~~~~~s~slF--~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~----------------------------~~~~~l 94 (172)
T PF06144_consen 45 LLEELQSPSLF--GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNP----------------------------PPDCIL 94 (172)
T ss_dssp HTTTSTTTTSS--SSEEEEEEE-----TT-S-TTHHHHHHHHTTT------------------------------SSEEE
T ss_pred HHHHHhcCCcc--CCCeEEEEecCccccccccHHHHHHHHHHHhCC----------------------------CCCEEE
Confidence 44555555655 3568999999844311 1234556666655421 123446
Q ss_pred EEEec-CCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 436 ICICN-DLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 436 I~icN-Dl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
|+.++ ... ......+...+.++.|..|...++...++..+.+.|+.++++++..|++..++|++.+.+.|+-++
T Consensus 95 ii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 95 IIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp EEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred EEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 66666 332 123345566888999999999999999999999999999999999999999999999999998775
No 312
>PRK13949 shikimate kinase; Provisional
Probab=96.93 E-value=0.00073 Score=69.18 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
+.++|.||||+||||+++.+|+.+|+.++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999888755
No 313
>PF13245 AAA_19: Part of AAA domain
Probab=96.92 E-value=0.0012 Score=58.65 Aligned_cols=33 Identities=39% Similarity=0.601 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHh------CCCcceecC
Q 002241 312 KVLLLCGPPGLGKT-TLAHVAAKHC------GYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKT-TLA~~lAkel------G~~viEiNa 344 (948)
+.+++.||||+||| +++++++..+ +-.|+.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 67888999999999 6777777765 455666644
No 314
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.92 E-value=0.00071 Score=67.21 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
++|+||||+||||+|+.||+.+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999998877443
No 315
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.92 E-value=0.0026 Score=66.84 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.++|+||+|+||||++++++.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999998874
No 316
>PRK14530 adenylate kinase; Provisional
Probab=96.90 E-value=0.0008 Score=71.40 Aligned_cols=30 Identities=37% Similarity=0.491 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+.++|.||||+||||+++.||+.+|+.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 468899999999999999999999987663
No 317
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.90 E-value=0.00067 Score=67.45 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=24.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
+++|+|+||+||||+|+.+++.+|..++
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 4789999999999999999999876554
No 318
>PRK05907 hypothetical protein; Provisional
Probab=96.90 E-value=0.1 Score=58.81 Aligned_cols=190 Identities=14% Similarity=0.121 Sum_probs=119.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
.+.|++|.-- ..+.-..+..-++-....+++.+. . .+.+.+.+++.++++ ...+|++...+.+.. ...
T Consensus 19 ~~y~~~g~~~--~~~~~~l~~~~~~~~~~~fdg~~~----~-~~~ii~~aetlPfFa--erRlV~v~~~~~~~~---~~~ 86 (311)
T PRK05907 19 PAVIVIGSSS--EEDKDIFIELLVSGRKSEFDGQGL----L-QQELLSWTEHFGLFA--SQETIGIYQAEKMSS---STQ 86 (311)
T ss_pred ceEEEecCCc--HHHHHHHHHHhCCCccceecCCCC----C-HHHHHHHHhcCCccc--CeEEEEEeccccccc---ccH
Confidence 6899999866 444444444434433333433322 1 244555666666653 446677765543321 345
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccc---eEEE----EecCcCH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQI---AKVH----VFIQPSV 464 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~---~~iI----~F~~p~~ 464 (948)
+.|.+.+..... ..+-||++++ .. ....++.. +..+ .|.++..
T Consensus 87 ~~L~~Yl~np~~---------------------------~~~liv~~~~--~d-~~kkl~K~i~k~~~v~~~~e~~~l~e 136 (311)
T PRK05907 87 EFLIRYARNPNP---------------------------HLTLFLFTTK--QE-CFSSLSKKLSSALCLSLFGEWFADRD 136 (311)
T ss_pred HHHHHHHhCCCC---------------------------CeEEEEEEec--cc-HHHHHHHHHhhcceeccccccCCCCH
Confidence 667777653211 1122334442 11 22222222 4444 7998999
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHh---cCccccccccccceeccccccccHHHHHHH
Q 002241 465 SRVVSRLKHICNNESMKTSSIALTTLAEYT-ECDIRSCLNTLQFLDK---KKEILNVMDIGSQVVGRKDMSRSAFDIWKE 540 (948)
Q Consensus 465 ~~l~~~L~~I~~~Egi~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~---~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~ 540 (948)
.++...+...++++|+.++.+++..|++.+ ++|+..+.|.|+-++. .+..++.+++...+ + +-...++|++++.
T Consensus 137 ~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv-~-~s~e~nIF~L~da 214 (311)
T PRK05907 137 KRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFV-V-KKEAASLWKLRDA 214 (311)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHh-c-CcccccHHHHHHH
Confidence 999999999999999999999999999999 6999999999998754 24557767666432 2 3344589999999
Q ss_pred HHhcc
Q 002241 541 IFQKR 545 (948)
Q Consensus 541 If~~~ 545 (948)
|+..+
T Consensus 215 i~~~~ 219 (311)
T PRK05907 215 LLRRD 219 (311)
T ss_pred HHccC
Confidence 99765
No 319
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.89 E-value=0.006 Score=63.17 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
++++|+||+|+||+|+++.|+++.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcC
Confidence 789999999999999999999986
No 320
>PRK07261 topology modulation protein; Provisional
Probab=96.89 E-value=0.00081 Score=68.96 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
-++|+|+||+||||+|+.|++.+|+.++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 37899999999999999999999887776543
No 321
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.87 E-value=0.0077 Score=64.34 Aligned_cols=38 Identities=32% Similarity=0.399 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
|-+....++|.||||+|||+++..+|.+ .|..++.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5677899999999999999999876643 2556666654
No 322
>PRK14532 adenylate kinase; Provisional
Probab=96.86 E-value=0.00082 Score=69.55 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++|.||||+||||+|+.||+.+|+.++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 38899999999999999999999976654
No 323
>PRK14527 adenylate kinase; Provisional
Probab=96.86 E-value=0.001 Score=69.24 Aligned_cols=32 Identities=38% Similarity=0.629 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.+++++++||||+||||+|+.+|+.+|+..+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34799999999999999999999999876553
No 324
>PLN02840 tRNA dimethylallyltransferase
Probab=96.85 E-value=0.0043 Score=71.90 Aligned_cols=35 Identities=31% Similarity=0.577 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
..++++|.||+|+||||||..||++++..++..+.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 34689999999999999999999999987765543
No 325
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=96.84 E-value=0.0014 Score=81.81 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC-------cceecCCCCCChHHHHHHH-HHHHhhhcccccCCCcEEEecCcccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH-------VVEVNASDDRSSSTIENKI-LDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~-------viEiNaSd~rs~~~~~~~I-~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
-++||.|.||||||++|+++++...-. ...++.+.. ....+.. .+..............+++|||+|.+
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~---~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm 569 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTAS---IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC 569 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccch---hhhcccccCcccccCCcEEEcCCCeEEecchhhC
Confidence 589999999999999999999864311 122221110 0000000 00000000011234579999999998
Q ss_pred cCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC
Q 002241 384 LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY 443 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~ 443 (948)
.. .....|++.++....+....+ ........+-||++||..+
T Consensus 570 s~---~~Q~aLlEaMEqqtIsI~KaG---------------i~~tL~ar~rVIAAaNP~~ 611 (915)
T PTZ00111 570 HN---ESRLSLYEVMEQQTVTIAKAG---------------IVATLKAETAILASCNPIN 611 (915)
T ss_pred CH---HHHHHHHHHHhCCEEEEecCC---------------cceecCCCeEEEEEcCCcc
Confidence 53 556778888765432111000 0011245677999999753
No 326
>PRK09354 recA recombinase A; Provisional
Probab=96.82 E-value=0.0077 Score=68.40 Aligned_cols=77 Identities=22% Similarity=0.360 Sum_probs=48.4
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCChH------------------HHHHHHHHHHhhh
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRSSS------------------TIENKILDVVQMN 364 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs~~------------------~~~~~I~~~~~~~ 364 (948)
-|-|..++.+|+||+|+|||||+..++.+ .|-.++.|.+-..-... ..++.+ ..+.
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l-~i~~-- 131 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQAL-EIAD-- 131 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHH-HHHH--
Confidence 36788999999999999999999976654 36666666653321111 011111 1111
Q ss_pred cccccCCCcEEEecCcccccC
Q 002241 365 SVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 365 sv~~~~kp~iLIIDEID~l~~ 385 (948)
.+.....+.+||||=|-.+..
T Consensus 132 ~li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred HHhhcCCCCEEEEeChhhhcc
Confidence 112245789999999987763
No 327
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.81 E-value=0.00091 Score=69.20 Aligned_cols=29 Identities=45% Similarity=0.659 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
++|+||||+||||+|+.||+++|+.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998776543
No 328
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.79 E-value=0.0014 Score=71.15 Aligned_cols=32 Identities=31% Similarity=0.594 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
.++|+|+||+||||+|+.+|+.+ |++++.++.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 37899999999999999999987 577776654
No 329
>PRK06547 hypothetical protein; Provisional
Probab=96.78 E-value=0.0013 Score=67.67 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
...+++++||+|+||||+|+.+|+.+|+.++.+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 357899999999999999999999988776654
No 330
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.78 E-value=0.00087 Score=67.66 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=23.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
++|+||+|+||||+|+.+++.+|+.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999985543
No 331
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.77 E-value=0.0061 Score=65.58 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=28.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHH-HHHHH--hCCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAH-VAAKH--CGYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~-~lAke--lG~~viEiNa 344 (948)
|-|....++|.||||+||||++. .++.- -|..++.+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45677899999999999999975 44433 2667766663
No 332
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.77 E-value=0.0036 Score=69.41 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
+++|+||+|+|||++|..||++++..++..++
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 47899999999999999999999887755544
No 333
>PRK06217 hypothetical protein; Validated
Probab=96.76 E-value=0.0011 Score=68.53 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
.++|.|++|+||||+|+.||+.+|+.++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 48999999999999999999999988776553
No 334
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0018 Score=67.20 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++|+|+||+||||+|+-||+++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 468999999999999999999987
No 335
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.73 E-value=0.0068 Score=66.41 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNAS 345 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaS 345 (948)
|.+...+++|.||||+||||++..+|.++ |..|+.+...
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 55667899999999999999988776653 7778777653
No 336
>PLN02200 adenylate kinase family protein
Probab=96.72 E-value=0.0014 Score=70.68 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=29.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASD 346 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd 346 (948)
...+.+++|+||||+||||+|..+|+++|+. .++.++
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gd 76 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGD 76 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccH
Confidence 3345789999999999999999999999865 344443
No 337
>PRK14528 adenylate kinase; Provisional
Probab=96.71 E-value=0.0014 Score=68.11 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+.+++.||||+||||+|+.+|+.+|+.++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 458999999999999999999999987654
No 338
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.71 E-value=0.023 Score=65.25 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=65.3
Q ss_pred cCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhcccc-ccccCCCcEEEEecCCCchhh
Q 002241 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGC-KKASLLRPVICICNDLYAPAL 447 (948)
Q Consensus 369 ~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~-~~~~~~rPII~icNDl~~p~L 447 (948)
..+..||.|||+.-+. ...++.|++.+..+..... +.|. .....+.-+|.+.|--....-
T Consensus 142 ~AnRGIlYvDEvnlL~---d~lvd~LLd~aaeG~n~ve----------------reGisi~hpa~fvligTmNPEeGeLr 202 (423)
T COG1239 142 RANRGILYVDEVNLLD---DHLVDALLDVAAEGVNDVE----------------REGISIRHPARFLLIGTMNPEEGELR 202 (423)
T ss_pred hccCCEEEEecccccc---HHHHHHHHHHHHhCCceee----------------eCceeeccCccEEEEeecCccccccc
Confidence 4567899999997663 3678889988875321111 1111 112344456667775533222
Q ss_pred hhhcc-ceEEEEecCc-CHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHH-HHHHHHHH
Q 002241 448 RSLRQ-IAKVHVFIQP-SVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIR-SCLNTLQF 507 (948)
Q Consensus 448 r~Lr~-~~~iI~F~~p-~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR-~aIn~LQ~ 507 (948)
.+|.. |...|....| +.+..+.++.+-..-+ ..++..+..+++ ....+| ++++..++
T Consensus 203 pqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~--~~Pe~f~~~~~~-~~~~lR~~ii~ar~~ 262 (423)
T COG1239 203 PQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFE--AVPEAFLEKYAD-AQRALRARIIAARSL 262 (423)
T ss_pred hhhHhhhcceeeccCCCCHHHHHHHHHHHHHhh--cCcHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 33433 5777777655 5677777777665553 334444444444 445677 34443333
No 339
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.70 E-value=0.0052 Score=68.51 Aligned_cols=154 Identities=16% Similarity=0.214 Sum_probs=81.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCC--------cEEEecCcccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRP--------KCLVIDEIDGA 383 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp--------~iLIIDEID~l 383 (948)
++++|.||+|+|||.||..||++ +.++ ||+ |.+. |..-+. .+..+| .--+||-+|--
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eI--Isa-DS~Q-------vYr~ld----IgTaKpt~eE~~~i~Hhlid~~~p~ 69 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEI--INV-DSIQ-------VYKEFD----IASCKPSKELRKHIKHHLVDFLEPI 69 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcE--Eec-cHHH-------HHCCCc----eecCCCCHHHHcCCCeeeeeccCCC
Confidence 68999999999999999999999 3333 333 2111 000000 011122 23455655422
Q ss_pred cC-CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCc
Q 002241 384 LG-DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 384 ~~-~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p 462 (948)
-. +...+.+...+.+..-. ..-+.||||=-..+|-.+|-. -+.+.++
T Consensus 70 e~~sv~~f~~~a~~~i~~i~--------------------------~~gk~PilvGGTglYi~all~------gl~~~p~ 117 (300)
T PRK14729 70 KEYNLGIFYKEALKIIKELR--------------------------QQKKIPIFVGGSAFYFKHLKY------GLPSTPP 117 (300)
T ss_pred CceeHHHHHHHHHHHHHHHH--------------------------HCCCCEEEEeCchHHHHHHHc------CCCCCCC
Confidence 11 11233344444443211 122478888777888655421 1222334
Q ss_pred CHHHHHHHHHHHhhhcCC--------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCccc
Q 002241 463 SVSRVVSRLKHICNNESM--------KTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEIL 515 (948)
Q Consensus 463 ~~~~l~~~L~~I~~~Egi--------~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~ 515 (948)
....+...+...+..+|. .+|+..... ...+|.|..+..|+.+...+...
T Consensus 118 ~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~---i~pnd~~Ri~RALEv~~~tG~~~ 175 (300)
T PRK14729 118 VSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYES---INKNDIYRIKRSLEVYYQTGIPI 175 (300)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhh---CCcCCHHHHHHHHHHHHHhCCCh
Confidence 445555566555555552 223322222 24689999999999987655443
No 340
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=96.70 E-value=0.0066 Score=70.51 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=104.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCCh---HHHHHHHHHHHhhhc-----ccccCCCcEEEecCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSS---STIENKILDVVQMNS-----VMADSRPKCLVIDEI 380 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~---~~~~~~I~~~~~~~s-----v~~~~kp~iLIIDEI 380 (948)
-.+||+|.+||||--.|++|=+.- +-.+|.+|+...-.. .++-...+.++.-.. -+.-....-||+|||
T Consensus 247 ~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEI 326 (550)
T COG3604 247 STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEI 326 (550)
T ss_pred CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhh
Confidence 579999999999999999998764 468999999754221 111112222221110 011223568999999
Q ss_pred ccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh--hcc----ce
Q 002241 381 DGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS--LRQ----IA 454 (948)
Q Consensus 381 D~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~--Lr~----~~ 454 (948)
.-++- ..+-.|+..+.....- .+. +.........||+-+|--.....+. +|. +-
T Consensus 327 GelPL---~lQaKLLRvLQegEie---RvG--------------~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRL 386 (550)
T COG3604 327 GELPL---ALQAKLLRVLQEGEIE---RVG--------------GDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRL 386 (550)
T ss_pred ccCCH---HHHHHHHHHHhhccee---ecC--------------CCceeEEEEEEEeccchhHHHHHHcCcchhhhhhcc
Confidence 88854 5677788888753321 010 0111233456888888422211111 111 11
Q ss_pred EEEEecCc-------CHHHHHH-HHHHHhhhcCC---CCCHHHHHHHHHH-ccCCHHHHHHHHHHHHhc
Q 002241 455 KVHVFIQP-------SVSRVVS-RLKHICNNESM---KTSSIALTTLAEY-TECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 455 ~iI~F~~p-------~~~~l~~-~L~~I~~~Egi---~id~~~L~~L~e~-s~GDIR~aIn~LQ~~~~~ 511 (948)
.++.+.-| +.--+.. .+..++.+.|. .++.++++.|..+ .-|++|..-|.++-.+..
T Consensus 387 sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavll 455 (550)
T COG3604 387 SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLL 455 (550)
T ss_pred cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence 11222112 2223333 34555555554 6899999999987 479999999999987653
No 341
>PRK01184 hypothetical protein; Provisional
Probab=96.69 E-value=0.0013 Score=67.89 Aligned_cols=30 Identities=33% Similarity=0.558 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
++++|+||||+||||+++ +|+++|+.++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 479999999999999998 788999877544
No 342
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0015 Score=66.68 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
+.++|.|++|+||||+.+.||+.+|++++-.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 579999999999999999999999999987654
No 343
>PRK13948 shikimate kinase; Provisional
Probab=96.67 E-value=0.0017 Score=67.28 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
.+..++|.|++|+||||+++.||+.+|+.++..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4578999999999999999999999999998665
No 344
>PRK13946 shikimate kinase; Provisional
Probab=96.67 E-value=0.0016 Score=67.49 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
.+.++|+|++|+||||+++.||+.+|+.++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 468999999999999999999999999987765
No 345
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.67 E-value=0.013 Score=63.29 Aligned_cols=39 Identities=33% Similarity=0.481 Sum_probs=29.4
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
.|-|....+|++||||+|||++|.-++.+ .|..++.+..
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 36678899999999999999999855543 3656655543
No 346
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.67 E-value=0.0035 Score=70.16 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
++.+|++||+|+||||++++++.++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 347
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.66 E-value=0.0018 Score=76.99 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG-YHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG-~~viEi 342 (948)
++|+|.||||+||||||+.||+-+. |.++-+
T Consensus 104 ~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 104 QILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 6999999999999999999999763 333333
No 348
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.66 E-value=0.0038 Score=66.13 Aligned_cols=39 Identities=33% Similarity=0.500 Sum_probs=33.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
|.+...+++|+||||+||||++..+|.++ |..++.+...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56778999999999999999999988764 6788888653
No 349
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.65 E-value=0.011 Score=65.08 Aligned_cols=76 Identities=21% Similarity=0.369 Sum_probs=46.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CCcceecCCCCC-------------ChHHHHHHHHHHHhhhcccccCCCcEE
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG---YHVVEVNASDDR-------------SSSTIENKILDVVQMNSVMADSRPKCL 375 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG---~~viEiNaSd~r-------------s~~~~~~~I~~~~~~~sv~~~~kp~iL 375 (948)
.+++|+||+|+||||+++++..+.. ..++.+..+... ....+.+.+..++ ...|.+|
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~l-------R~~PD~i 153 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAIL-------RQDPDII 153 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHh-------ccCCCEE
Confidence 4799999999999999999887753 233333221110 0112333344333 3579999
Q ss_pred EecCcccccCCChhHHHHHHHHHH
Q 002241 376 VIDEIDGALGDGKGAVEVILKMVS 399 (948)
Q Consensus 376 IIDEID~l~~~~~~~~~~Ll~li~ 399 (948)
+|+||.+- .....+++..+
T Consensus 154 ~vgEiR~~-----e~a~~~~~aa~ 172 (264)
T cd01129 154 MVGEIRDA-----ETAEIAVQAAL 172 (264)
T ss_pred EeccCCCH-----HHHHHHHHHHH
Confidence 99999653 33444455443
No 350
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.64 E-value=0.02 Score=65.27 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
++.+|++||+|+||||++++++.+..
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 47899999999999999999998764
No 351
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.63 E-value=0.0015 Score=70.22 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
++|.||||+||||+|+.||+.+|+.++.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 8899999999999999999999987665543
No 352
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.62 E-value=0.017 Score=68.02 Aligned_cols=177 Identities=16% Similarity=0.187 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCChHHHHHHH----HHHHhhhc------ccccCCCcEEEec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRSSSTIENKI----LDVVQMNS------VMADSRPKCLVID 378 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs~~~~~~~I----~~~~~~~s------v~~~~kp~iLIID 378 (948)
-.+||.|.+||||--+||++=+. .+-.+|.|||.-.-- .-++..+ ..++.-+. .+......-||+|
T Consensus 269 stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe-~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLD 347 (560)
T COG3829 269 STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE-TLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLD 347 (560)
T ss_pred CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH-HHHHHHHhCcCCccccccccCCCCcceeeccCCeEEeh
Confidence 57999999999999999988775 467999999964321 1111111 00111000 0011234679999
Q ss_pred CcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh--hcc----
Q 002241 379 EIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS--LRQ---- 452 (948)
Q Consensus 379 EID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~--Lr~---- 452 (948)
||..++- ..+..|+..++....- ... +.........||..+|.-....+.. +|.
T Consensus 348 EIgempl---~LQaKLLRVLQEkei~---rvG--------------~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY 407 (560)
T COG3829 348 EIGEMPL---PLQAKLLRVLQEKEIE---RVG--------------GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY 407 (560)
T ss_pred hhccCCH---HHHHHHHHHHhhceEE---ecC--------------CCCceeeEEEEEeccCcCHHHHHhcCcchhhhee
Confidence 9988853 5667788888753321 110 0011233456788888543333322 111
Q ss_pred ceEEEEecCcC-------HHHHH-HHHHHHhhhcCC---CCCHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 002241 453 IAKVHVFIQPS-------VSRVV-SRLKHICNNESM---KTSSIALTTLAEYT-ECDIRSCLNTLQFLD 509 (948)
Q Consensus 453 ~~~iI~F~~p~-------~~~l~-~~L~~I~~~Egi---~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~ 509 (948)
+-.++.+.-|+ ...++ ..|..+..+.+. .++++++..|..+. -|++|..-|.++.+.
T Consensus 408 RLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v 476 (560)
T COG3829 408 RLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAV 476 (560)
T ss_pred eeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 12222222222 22222 233444555554 36899999998874 799999999998775
No 353
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.60 E-value=0.013 Score=64.15 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
-|-|...+.|++||||+|||+++.-+|.+ .|..++.+..
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 36788899999999999999999977654 3667776655
No 354
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.60 E-value=0.0018 Score=65.81 Aligned_cols=31 Identities=39% Similarity=0.627 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
+.++|+|++|+||||+++.||+.+|+.++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 4688899999999999999999999988754
No 355
>PRK02496 adk adenylate kinase; Provisional
Probab=96.59 E-value=0.0016 Score=67.14 Aligned_cols=29 Identities=41% Similarity=0.586 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
-++|.||||+||||+|+.||+.+|+..+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38889999999999999999999876653
No 356
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.58 E-value=0.0021 Score=66.02 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
+.++|.||+|+||||+++.||+.+|+.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 579999999999999999999999988776654
No 357
>PRK04040 adenylate kinase; Provisional
Probab=96.58 E-value=0.0018 Score=67.45 Aligned_cols=29 Identities=41% Similarity=0.732 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC--GYHVV 340 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel--G~~vi 340 (948)
+.++|+|+||+||||+++.+++.+ ++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 689999999999999999999999 66654
No 358
>PRK13808 adenylate kinase; Provisional
Probab=96.55 E-value=0.019 Score=64.94 Aligned_cols=29 Identities=38% Similarity=0.612 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
|||+||||+||||++..||+.+|+..+.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 78899999999999999999998755543
No 359
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.0069 Score=69.95 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=52.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-------CCCcceecCCCCCChHHHHHHHHHHHhhh---------------cccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC-------GYHVVEVNASDDRSSSTIENKILDVVQMN---------------SVMA 368 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel-------G~~viEiNaSd~rs~~~~~~~I~~~~~~~---------------sv~~ 368 (948)
+++++|.||+|+||||++.-+|..+ |..|.-+.+...|.+.... +....... .+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 4799999999999999999888764 5667777776655543211 11111100 0011
Q ss_pred cCCCcEEEecCcccccCCChhHHHHHHHHHH
Q 002241 369 DSRPKCLVIDEIDGALGDGKGAVEVILKMVS 399 (948)
Q Consensus 369 ~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~ 399 (948)
.....+||||++.....+ ...+..+..++.
T Consensus 252 ~~~~DlVLIDTaGr~~~~-~~~l~el~~~l~ 281 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKD-FMKLAEMKELLN 281 (388)
T ss_pred hCCCCEEEEcCCCCCccC-HHHHHHHHHHHH
Confidence 245789999999876532 223444444443
No 360
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.54 E-value=0.0018 Score=68.45 Aligned_cols=28 Identities=43% Similarity=0.654 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
++|.||||+||||+|+.||+.+|+.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7889999999999999999999876654
No 361
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.52 E-value=0.0083 Score=73.24 Aligned_cols=47 Identities=17% Similarity=0.349 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----C--CCcceecCCCCCChHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC----G--YHVVEVNASDDRSSSTIENKI 357 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel----G--~~viEiNaSd~rs~~~~~~~I 357 (948)
.++.+|+|+|||||||++..+...+ + ...+.+-|..-+....+.+.+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~ 219 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESL 219 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHH
Confidence 3789999999999999988766543 2 123445555444444444443
No 362
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.52 E-value=0.0038 Score=59.29 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+.++|+||+|+|||+++..++.++.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999999998887653
No 363
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.51 E-value=0.025 Score=63.85 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHH-------------------------hhh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVV-------------------------QMN 364 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~-------------------------~~~ 364 (948)
.+-+++|+|-.|||||.+++.+-++++.+.+.+|+-+.-+...+...|..-. |..
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 3467899999999999999999999999988888866554433333333222 211
Q ss_pred cccccCCCcEEEecCcccccCCChhHHHHHHHHHH
Q 002241 365 SVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVS 399 (948)
Q Consensus 365 sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~ 399 (948)
......+...||+|.+|.+..-+......|+++..
T Consensus 109 ~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~e 143 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADALRDMDAILLQCLFRLYE 143 (438)
T ss_pred HhhccCceEEEEEcCHHhhhccchHHHHHHHHHHH
Confidence 11112356789999999885433444566666654
No 364
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.51 E-value=0.0074 Score=66.49 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=42.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCC----------ChHHHHHHHHHHHhhhcccccCCCcEEEec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDR----------SSSTIENKILDVVQMNSVMADSRPKCLVID 378 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~r----------s~~~~~~~I~~~~~~~sv~~~~kp~iLIID 378 (948)
..++|||-||+||||+|+.|++.+ ++.++.++..+.. .-...+..+...+... -++..|||+|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~----ls~~~iVI~D 77 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA----LSKDTIVILD 77 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH----HTT-SEEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh----hccCeEEEEe
Confidence 368999999999999999999864 6777666642211 1122333444444322 2345899999
Q ss_pred CcccccCCChhHHHHHHHHH
Q 002241 379 EIDGALGDGKGAVEVILKMV 398 (948)
Q Consensus 379 EID~l~~~~~~~~~~Ll~li 398 (948)
+.-.+ +|+-..|..+.
T Consensus 78 d~nYi----Kg~RYelyclA 93 (270)
T PF08433_consen 78 DNNYI----KGMRYELYCLA 93 (270)
T ss_dssp S---S----HHHHHHHHHHH
T ss_pred CCchH----HHHHHHHHHHH
Confidence 88765 45555555544
No 365
>PRK04182 cytidylate kinase; Provisional
Probab=96.51 E-value=0.0021 Score=65.48 Aligned_cols=29 Identities=41% Similarity=0.753 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+++|+|++|+||||+++.||+.+|+.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999987764
No 366
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.51 E-value=0.0049 Score=75.36 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
+++||+|||||||||+|+++|+.+..
T Consensus 51 ~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 51 RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 36999999999999999999998763
No 367
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=96.50 E-value=0.0032 Score=70.57 Aligned_cols=126 Identities=25% Similarity=0.389 Sum_probs=66.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
+.|.+|.+||.||--+||||||.+|-.-+|-..+.||.+.++-.-++ . . .-..-.+++++|-|-.+.
T Consensus 151 N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~dkl~FEL--------G--~---AiDQfmVvFEDVKGq~~~ 217 (417)
T PF06431_consen 151 NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFEL--------G--C---AIDQFMVVFEDVKGQPSD 217 (417)
T ss_dssp TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-TTTHHHHH--------C--C---CTT-SEEEEEEE--SSTT
T ss_pred CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCChhhcchhh--------h--e---eeceEEEEEEecCCCcCC
Confidence 57889999999999999999999999999999999999876532111 1 1 112346788888776432
Q ss_pred ------ChhH--HHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEE
Q 002241 387 ------GKGA--VEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHV 458 (948)
Q Consensus 387 ------~~~~--~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~ 458 (948)
+.|. ++.|.+.+...-. ++.. .|.-+ | ....--|-|+|||+-.-|.--. -+++.++.
T Consensus 218 ~~~Lp~G~G~~NLDNLRD~LDG~V~-----VNLE-----rKH~N-K---~sQiFPPgIvTmNeY~iP~Tv~-vRf~~~~~ 282 (417)
T PF06431_consen 218 NKDLPPGQGMNNLDNLRDYLDGAVK-----VNLE-----RKHQN-K---RSQIFPPGIVTMNEYKIPQTVK-VRFCKVLD 282 (417)
T ss_dssp TTT----SHHHHHHTTHHHHH-SS------EEEE-----CSSSE-E---EEE----EEEEESS-B--HHHH-TTEEEEEE
T ss_pred CCCCCCCCCcccchhhhhhccCcee-----echh-----hhhcc-c---ccccCCCceEeeccccCCccee-eeeEeeEe
Confidence 2232 2345555543211 1110 01111 1 1223368999999987665432 34778888
Q ss_pred ec
Q 002241 459 FI 460 (948)
Q Consensus 459 F~ 460 (948)
|.
T Consensus 283 F~ 284 (417)
T PF06431_consen 283 FR 284 (417)
T ss_dssp --
T ss_pred cc
Confidence 85
No 368
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.48 E-value=0.0021 Score=61.45 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkel 335 (948)
++|+|+||+||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 369
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.47 E-value=0.0056 Score=67.40 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+.++|.||+|+||||+.+++|..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999999864
No 370
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.47 E-value=0.0028 Score=54.90 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkel 335 (948)
+.|+|+||+||||+++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 371
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.47 E-value=0.0022 Score=68.12 Aligned_cols=28 Identities=43% Similarity=0.693 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
++++||||+||||+|+.||+++|+..+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 8899999999999999999999976654
No 372
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.47 E-value=0.0092 Score=63.68 Aligned_cols=39 Identities=44% Similarity=0.597 Sum_probs=29.0
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHH---h-CCCcceecC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKH---C-GYHVVEVNA 344 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAke---l-G~~viEiNa 344 (948)
.|-|....+|++||||+|||+++.-++.+ . |..++.+..
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 36688899999999999999998865543 2 777666654
No 373
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.47 E-value=0.015 Score=60.15 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
.|+++|+||+|+|||||+..|+++..-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~ 29 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK 29 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc
Confidence 4899999999999999999999987543
No 374
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.47 E-value=0.003 Score=62.15 Aligned_cols=29 Identities=38% Similarity=0.400 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
...+++|+|+.|+||||+++.+++.+|..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34789999999999999999999999864
No 375
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.46 E-value=0.0024 Score=64.62 Aligned_cols=29 Identities=34% Similarity=0.737 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+++|+|++|+||||+|+.+|+.+|+.++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 58899999999999999999999988654
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=96.46 E-value=0.013 Score=66.41 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRS 349 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs 349 (948)
+.+++|+||+|+||||++..+|..+ |+.|.-+++...|.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 4799999999999999888777654 67777766544444
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.46 E-value=0.012 Score=59.95 Aligned_cols=36 Identities=44% Similarity=0.472 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDR 348 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~r 348 (948)
+++++||||+||||++..+|..+ |..++.+++...+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68899999999999999988765 7888888775544
No 378
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.45 E-value=0.0019 Score=65.37 Aligned_cols=26 Identities=46% Similarity=0.751 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
+.|+|+||||||||++.||++ |+.++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 88766
No 379
>PRK04328 hypothetical protein; Provisional
Probab=96.45 E-value=0.021 Score=62.15 Aligned_cols=38 Identities=37% Similarity=0.506 Sum_probs=28.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
|-|....+||+||||+|||+++.-++.+ .|..++.++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5678899999999999999998865543 2555555543
No 380
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.44 E-value=0.0023 Score=71.26 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-GYH 338 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-G~~ 338 (948)
++++|+||||+||||+|+.|++++ ++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~ 30 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAV 30 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCE
Confidence 689999999999999999999998 543
No 381
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.40 E-value=0.02 Score=57.01 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=46.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC--cceecC------CCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYH--VVEVNA------SDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~--viEiNa------Sd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
...++.|.||.|+|||||+++++...... -+.++. ...-|....+ ++.=+... ..+|.++|+||-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~-rv~laral-----~~~p~illlDEP~ 98 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKM-RLALAKLL-----LENPNLLLLDEPT 98 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHH-HHHHHHHH-----hcCCCEEEEeCCc
Confidence 34789999999999999999999865210 011111 0112222221 11111111 2578999999996
Q ss_pred cccCCChhHHHHHHHHHH
Q 002241 382 GALGDGKGAVEVILKMVS 399 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~ 399 (948)
.-. +......+.+++.
T Consensus 99 ~~L--D~~~~~~l~~~l~ 114 (144)
T cd03221 99 NHL--DLESIEALEEALK 114 (144)
T ss_pred cCC--CHHHHHHHHHHHH
Confidence 432 3345556666654
No 382
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.40 E-value=0.0066 Score=66.64 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=45.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC---Ccce------ecCCCC--------CChHHHHHHHHHHHhhhcccccCCCc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY---HVVE------VNASDD--------RSSSTIENKILDVVQMNSVMADSRPK 373 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~---~viE------iNaSd~--------rs~~~~~~~I~~~~~~~sv~~~~kp~ 373 (948)
+..+|++||+|+||||++.+++..+.. .++- +..... .....+.+.+..++ ...|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L-------R~~pD 199 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL-------RQDPD 199 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT-------TS--S
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh-------cCCCC
Confidence 378999999999999999999988632 2222 222111 12234444444443 35689
Q ss_pred EEEecCcccccCCChhHHHHHHHHHH
Q 002241 374 CLVIDEIDGALGDGKGAVEVILKMVS 399 (948)
Q Consensus 374 iLIIDEID~l~~~~~~~~~~Ll~li~ 399 (948)
+|+|+||-+. .+... ++.++
T Consensus 200 ~iiigEiR~~-----e~~~~-~~a~~ 219 (270)
T PF00437_consen 200 VIIIGEIRDP-----EAAEA-IQAAN 219 (270)
T ss_dssp EEEESCE-SC-----HHHHH-HHHHH
T ss_pred cccccccCCH-----hHHHH-HHhhc
Confidence 9999999764 34444 55444
No 383
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.013 Score=67.18 Aligned_cols=40 Identities=35% Similarity=0.524 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----C-CCcceecCCCCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC----G-YHVVEVNASDDRS 349 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel----G-~~viEiNaSd~rs 349 (948)
...+++|.||+|+||||++..||..+ | ..|..+.....|.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ 180 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI 180 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 35799999999999999999998763 4 3566666544443
No 384
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.39 E-value=0.003 Score=63.26 Aligned_cols=32 Identities=31% Similarity=0.476 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
+++|+|+||+||||+|+.|+..+ |+.++.++.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 47899999999999999999998 777777754
No 385
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.39 E-value=0.01 Score=69.58 Aligned_cols=64 Identities=23% Similarity=0.346 Sum_probs=42.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC---------cceecCCCC-------CChHHHHHHHHHHHhhhcccccCCCcEE
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH---------VVEVNASDD-------RSSSTIENKILDVVQMNSVMADSRPKCL 375 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~---------viEiNaSd~-------rs~~~~~~~I~~~~~~~sv~~~~kp~iL 375 (948)
-++|++||+|+||||+.+++.++++-. .+|+.-+.. ..+-.+...++.++ ...|.||
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~L-------RqDPDvI 331 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAIL-------RQDPDVI 331 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHh-------ccCCCeE
Confidence 479999999999999999999988632 233332221 11223444444444 3679999
Q ss_pred EecCccc
Q 002241 376 VIDEIDG 382 (948)
Q Consensus 376 IIDEID~ 382 (948)
+|.||-.
T Consensus 332 mVGEIRD 338 (500)
T COG2804 332 MVGEIRD 338 (500)
T ss_pred EEeccCC
Confidence 9999954
No 386
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.38 E-value=0.009 Score=63.52 Aligned_cols=41 Identities=29% Similarity=0.392 Sum_probs=33.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---C------CCcceecCCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---G------YHVVEVNASDD 347 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G------~~viEiNaSd~ 347 (948)
|.+...+..|+||||+|||+++..+|... + ..++.+...+.
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 66778999999999999999999888653 3 67788877553
No 387
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.38 E-value=0.027 Score=58.21 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC--CcceecCC-------C-CCChHHHHHHHHHHHhhhcccccCCCcEEEecC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGY--HVVEVNAS-------D-DRSSSTIENKILDVVQMNSVMADSRPKCLVIDE 379 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~--~viEiNaS-------d-~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDE 379 (948)
...++.|.||.|+|||||+++++..... --+.++.. + .-|...- .++.-+... ..+|.++|+||
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~-qrv~laral-----~~~p~lllLDE 97 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGEL-QRVAIAAAL-----LRNATFYLFDE 97 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHH-HHHHHHHHH-----hcCCCEEEEEC
Confidence 3468999999999999999999976421 01122211 1 0222211 111111111 24789999999
Q ss_pred cccccCCChhHHHHHHHHHH
Q 002241 380 IDGALGDGKGAVEVILKMVS 399 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~ 399 (948)
--.-. +......+.+++.
T Consensus 98 Pts~L--D~~~~~~l~~~l~ 115 (177)
T cd03222 98 PSAYL--DIEQRLNAARAIR 115 (177)
T ss_pred CcccC--CHHHHHHHHHHHH
Confidence 96433 3345555666664
No 388
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.38 E-value=0.0096 Score=63.32 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lA 332 (948)
.+.++|+||.|+||||+.+.++
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3889999999999999999888
No 389
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.38 E-value=0.0086 Score=66.45 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=33.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----C-CCcceecCCCCCCh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC----G-YHVVEVNASDDRSS 350 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel----G-~~viEiNaSd~rs~ 350 (948)
.+++++|+||+|+||||++..||..+ | +.|..+.+...|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~ 238 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIG 238 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchh
Confidence 34799999999999999999888764 4 78888887665543
No 390
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.37 E-value=0.0053 Score=70.33 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.=.+|.||||+|||||++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3467779999999999999998763
No 391
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.36 E-value=0.0093 Score=68.58 Aligned_cols=25 Identities=44% Similarity=0.793 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...+|++||+|+||||+++++++++
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999876
No 392
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.34 E-value=0.0032 Score=66.19 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHV 339 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~v 339 (948)
..+++++|+||+||||+|..||.++|+.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 46899999999999999999999988754
No 393
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.34 E-value=0.042 Score=63.99 Aligned_cols=67 Identities=22% Similarity=0.374 Sum_probs=47.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHH-HHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSST-IENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~-~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
+++|+||-+|||||++..+.++..-.++.+|--|.+.... +.+.+........ .+...||+|||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~----~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKE----REKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhc----cCCceEEEecccCc
Confidence 9999999999999999999888755588888877665432 2222222222111 15679999999987
No 394
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.34 E-value=0.0062 Score=69.47 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
...+|++||+|+||||++++++.++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999998764
No 395
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.0055 Score=64.73 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
..||-||||||||||.+-+|+-+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhh
Confidence 488999999999999999998753
No 396
>PRK08233 hypothetical protein; Provisional
Probab=96.30 E-value=0.0033 Score=64.26 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.++.|.|+||+||||+|..||.+++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6889999999999999999999986
No 397
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.29 E-value=0.0048 Score=70.89 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
....++|.||+|+|||||++.+++.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 346799999999999999999999754
No 398
>PRK06696 uridine kinase; Validated
Probab=96.29 E-value=0.0054 Score=65.52 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDD 347 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~ 347 (948)
.+.++.|+|++|+||||+|+.||..+ |..++.+...|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 34789999999999999999999998 666766655444
No 399
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.29 E-value=0.01 Score=67.91 Aligned_cols=24 Identities=46% Similarity=0.591 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+++|+.|.||||||.||..+|+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 589999999999999999999988
No 400
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.27 E-value=0.0045 Score=63.32 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
..+++|+|+||+||||+|+.||..+ |..++.++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 4689999999999999999999986 556666655
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.26 E-value=0.027 Score=69.29 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=53.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH--hCCCcceecCCCC-CChHHHHHHHHHHHhhh-------------------
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH--CGYHVVEVNASDD-RSSSTIENKILDVVQMN------------------- 364 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke--lG~~viEiNaSd~-rs~~~~~~~I~~~~~~~------------------- 364 (948)
..+..|.+||+-|.|.||||++-.++.- -|.+|..++..+. .....|...+..+++..
T Consensus 33 ~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~ 112 (894)
T COG2909 33 RANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVS 112 (894)
T ss_pred cCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccccc
Confidence 3456799999999999999999999853 3667777765432 33445555555444410
Q ss_pred ----------cccccCCCcEEEecCcccccC
Q 002241 365 ----------SVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 365 ----------sv~~~~kp~iLIIDEID~l~~ 385 (948)
.+.....|..|||||.+.+..
T Consensus 113 l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~ 143 (894)
T COG2909 113 LESLLSSLLNELASYEGPLYLVLDDYHLISD 143 (894)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeccccccCc
Confidence 011245688999999998754
No 402
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.25 E-value=0.014 Score=66.39 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=66.8
Q ss_pred cCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcce-ecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccc
Q 002241 305 STGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE-VNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 305 ~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viE-iNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l 383 (948)
..|.|.++.|+|+|||+||||..+..|.+-++-.|+- +|..+.- -... -..-+|-+|||+-.
T Consensus 256 Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~ShF-------------WLqP---L~d~Ki~llDDAT~- 318 (432)
T PF00519_consen 256 LKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF-------------WLQP---LADAKIALLDDATY- 318 (432)
T ss_dssp HHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTSCG-------------GGGG---GCT-SSEEEEEE-H-
T ss_pred HhCCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCCcc-------------cccc---hhcCcEEEEcCCcc-
Confidence 3588999999999999999999999999999888876 4443211 1111 23457889998843
Q ss_pred cCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC--CchhhhhhccceEEEEecC
Q 002241 384 LGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL--YAPALRSLRQIAKVHVFIQ 461 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl--~~p~Lr~Lr~~~~iI~F~~ 461 (948)
..++.+=..+..... +-.+ ....|.|.- ....--|+|+|+|.- ..+.++-|.++...+.|+.
T Consensus 319 -----~cW~Y~D~ylRNaLD----GN~v------siD~KHkap-~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~n 382 (432)
T PF00519_consen 319 -----PCWDYIDTYLRNALD----GNPV------SIDCKHKAP-VQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFPN 382 (432)
T ss_dssp -----HHHHHHHHHTHHHHC----TSEE------EEEESSSEE-EEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--S
T ss_pred -----cHHHHHHHHHHhccC----CCee------eeeccCCCc-eEeecCceEEecCCCCCcchhhhhhhheEEEEEcCC
Confidence 233322111111111 1000 001122221 122245667677632 2455667888888888864
Q ss_pred c
Q 002241 462 P 462 (948)
Q Consensus 462 p 462 (948)
+
T Consensus 383 ~ 383 (432)
T PF00519_consen 383 P 383 (432)
T ss_dssp -
T ss_pred c
Confidence 3
No 403
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.22 E-value=0.0064 Score=61.42 Aligned_cols=37 Identities=35% Similarity=0.463 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDR 348 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~r 348 (948)
.++.|+|.+|+||||+|+.|.+.+ |+.++.++....|
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 589999999999999999999875 8888887665443
No 404
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.04 Score=55.26 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+|||||+++++..+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999999865
No 405
>PRK14526 adenylate kinase; Provisional
Probab=96.22 E-value=0.0036 Score=66.48 Aligned_cols=27 Identities=37% Similarity=0.733 Sum_probs=24.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
++|.||||+||||+++.+|+.+|+..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 789999999999999999999887654
No 406
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.18 E-value=0.051 Score=66.14 Aligned_cols=173 Identities=10% Similarity=0.036 Sum_probs=98.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--Cccee--cCCCCCChHHHHHHHHHHHhhhc------ccccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY--HVVEV--NASDDRSSSTIENKILDVVQMNS------VMADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~--~viEi--NaSd~rs~~~~~~~I~~~~~~~s------v~~~~kp~iLIIDEID 381 (948)
..+||.|++|+||||+++.++.-+.- .++++ ++++++-...+ .|...+.... +.......||+|||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 57999999999999999999998643 55554 44443322111 1222222222 1223456899999998
Q ss_pred cccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC--C-Cchhhhh--hccceEE
Q 002241 382 GALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND--L-YAPALRS--LRQIAKV 456 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND--l-~~p~Lr~--Lr~~~~i 456 (948)
.+. ...+..|++-++.......-.+. ....-.++++|+.+ . |...|.. +-+|...
T Consensus 104 ~~~---~~~~~aLleame~G~vtIeR~G~-----------------s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~ 163 (584)
T PRK13406 104 RLE---PGTAARLAAALDTGEVRLERDGL-----------------ALRLPARFGLVALDEGAEEDERAPAALADRLAFH 163 (584)
T ss_pred cCC---HHHHHHHHHHHhCCcEEEEECCc-----------------EEecCCCcEEEecCCChhcccCCCHHhHhheEEE
Confidence 773 47888899888764432110000 12233456666642 1 2111211 3346777
Q ss_pred EEecCcCHHHHH---------HHHHHHhhhcCCCCCHHHHHHHHHHc---cC-CHHHHHHHHHHH
Q 002241 457 HVFIQPSVSRVV---------SRLKHICNNESMKTSSIALTTLAEYT---EC-DIRSCLNTLQFL 508 (948)
Q Consensus 457 I~F~~p~~~~l~---------~~L~~I~~~Egi~id~~~L~~L~e~s---~G-DIR~aIn~LQ~~ 508 (948)
|.+..+...+.. ...+..+ .++.+++..+..||+.+ +- ..|..+..+...
T Consensus 164 v~v~~~~~~~~~~~~~~~~~I~~AR~rl--~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraA 226 (584)
T PRK13406 164 LDLDGLALRDAREIPIDADDIAAARARL--PAVGPPPEAIAALCAAAAALGIASLRAPLLALRAA 226 (584)
T ss_pred EEcCCCChHHhcccCCCHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 777766544321 1112212 47889999999888753 22 457776666544
No 407
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.18 E-value=0.0088 Score=67.46 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
++.+|++|++|+||||++++|+.+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999999875
No 408
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.17 E-value=0.021 Score=60.04 Aligned_cols=40 Identities=38% Similarity=0.484 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSS 350 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~ 350 (948)
+++++|.||+|+||||++--+|..+ |..|.-+.+...|.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 3789999999999999887777653 777777777666654
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.17 E-value=0.032 Score=58.95 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lA 332 (948)
.++++|+||.|+||||+.+.++
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999886
No 410
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.16 E-value=0.009 Score=73.10 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
++++|+|||||||||+++++|+.++.+
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 378899999999999999999998643
No 411
>PLN02165 adenylate isopentenyltransferase
Probab=96.16 E-value=0.0049 Score=69.41 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
+..++++|.||+|+|||+||..||+.+|+.++..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsa 74 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINS 74 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecC
Confidence 3456899999999999999999999999765543
No 412
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.16 E-value=0.0091 Score=71.10 Aligned_cols=25 Identities=48% Similarity=0.610 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..+++|.||||+||||+++.++..+
T Consensus 210 G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccC
Confidence 4799999999999999999999754
No 413
>PF13479 AAA_24: AAA domain
Probab=96.15 E-value=0.0036 Score=66.49 Aligned_cols=67 Identities=27% Similarity=0.344 Sum_probs=38.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH------HhC---CCcc-eecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK------HCG---YHVV-EVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk------elG---~~vi-EiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
-.++||||||+||||+|.-+-+ +.| +.+. ....-...+-..+.+.+..+... ......||||-|+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~-----~~~y~tiVIDsis 78 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED-----EADYDTIVIDSIS 78 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc-----cCCCCEEEEECHH
Confidence 4689999999999999987722 112 1111 01111122444454444333221 3567899999998
Q ss_pred cc
Q 002241 382 GA 383 (948)
Q Consensus 382 ~l 383 (948)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 65
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.15 E-value=0.047 Score=56.65 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lA 332 (948)
+++|+||.|.||||+.+.++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999888
No 415
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.15 E-value=0.0031 Score=62.94 Aligned_cols=26 Identities=42% Similarity=0.623 Sum_probs=22.6
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 316 LCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 316 L~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
|.||||+||||+|+.||+.+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 67999999999999999999875443
No 416
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.15 E-value=0.0044 Score=63.55 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
+.++|+||+|+||||++++||..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998764
No 417
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.14 E-value=0.055 Score=54.92 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=50.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcce---ecCCCC--------------------------CChHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVE---VNASDD--------------------------RSSSTIENKILDV 360 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viE---iNaSd~--------------------------rs~~~~~~~I~~~ 360 (948)
.+.+|+++|.||||+|-.+|-.+ |+.|.. +-.... .....-.....+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 56778888999999999887653 666655 333100 0011111111111
Q ss_pred Hhh-hcccccCCCcEEEecCcccccCCChhHHHHHHHHHHh
Q 002241 361 VQM-NSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSA 400 (948)
Q Consensus 361 ~~~-~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~ 400 (948)
... ......+...+||+|||-.+..-+--..+.++++++.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~ 124 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA 124 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc
Confidence 111 1112356789999999987755433345667777764
No 418
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.012 Score=65.46 Aligned_cols=163 Identities=19% Similarity=0.148 Sum_probs=86.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCC-CChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccC-CCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD-RSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG-DGK 388 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~-rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~-~~~ 388 (948)
.++++|+||+++|||.||..||+.+|.+||.++.--. +.-+....+. +......-.=.+||.+|-.-. +..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKp-------s~~e~~~vpHhliDi~~p~e~ysa~ 75 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKP-------SLEELAGVPHHLIDIRDPTESYSAA 75 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCC-------CHHHHcCCCEEEecccCccccccHH
Confidence 4789999999999999999999999998887665311 1100000000 000001112356777764321 112
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHH
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVV 468 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~ 468 (948)
.+.......+.... ..-+.|||.=-.-+|-.+|- .-....++....+.
T Consensus 76 ~f~~~a~~~i~~i~--------------------------~rgk~pIlVGGTglY~~aL~------~g~~~~p~~~~~~r 123 (308)
T COG0324 76 EFQRDALAAIDDIL--------------------------ARGKLPILVGGTGLYLKALL------EGLSLLPEADPEVR 123 (308)
T ss_pred HHHHHHHHHHHHHH--------------------------hCCCCcEEEccHHHHHHHHH------cCCCCCCCCCHHHH
Confidence 34444444444211 01236776655556644432 11222333344454
Q ss_pred HHHHHHhhhcCC--------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCccc
Q 002241 469 SRLKHICNNESM--------KTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEIL 515 (948)
Q Consensus 469 ~~L~~I~~~Egi--------~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~~ 515 (948)
..+...+...|. .+|+..... ...+|.|..+..|+.+...+..+
T Consensus 124 ~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~---i~pnD~~Ri~RALEv~~~tGk~~ 175 (308)
T COG0324 124 RRLEAELAELGNDALHAELKKIDPEAAAK---IHPNDPQRIIRALEVYYLTGKPI 175 (308)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhCHHHHHh---cCCCchhHHHHHHHHHHHHCCCH
Confidence 544444444443 223333222 34689999999999887665544
No 419
>PRK13764 ATPase; Provisional
Probab=96.13 E-value=0.0092 Score=72.30 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
++.+|++||||+||||++++++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999998864
No 420
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.13 E-value=0.04 Score=57.84 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lA 332 (948)
..++|+||.|+||||+.+.++
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 689999999999999999998
No 421
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.12 E-value=0.025 Score=57.46 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||.++++...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999764
No 422
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.12 E-value=0.013 Score=63.58 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=59.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHH-----H-HhCCCcceecCCCCCChHHHH---HHHHHHHhh-----hcccccCCCcEEE
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAA-----K-HCGYHVVEVNASDDRSSSTIE---NKILDVVQM-----NSVMADSRPKCLV 376 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lA-----k-elG~~viEiNaSd~rs~~~~~---~~I~~~~~~-----~sv~~~~kp~iLI 376 (948)
+..+||.||+|.||+.||+-|- + ++.-.++|+|+...|+..... ..++.++.- ..+.......+|+
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 3569999999999999999654 2 467799999999988764433 333333321 1122234568999
Q ss_pred ecCcccccCCChhHHHHHHHHHHhh
Q 002241 377 IDEIDGALGDGKGAVEVILKMVSAE 401 (948)
Q Consensus 377 IDEID~l~~~~~~~~~~Ll~li~~~ 401 (948)
+|||..+..+ .+..|++.|+..
T Consensus 288 ldeigelgad---eqamllkaieek 309 (531)
T COG4650 288 LDEIGELGAD---EQAMLLKAIEEK 309 (531)
T ss_pred hHhhhhcCcc---HHHHHHHHHHhh
Confidence 9999877443 334577777653
No 423
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.12 E-value=0.0043 Score=64.28 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHV 339 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~v 339 (948)
.+++|.||+|+||||+++.||...+..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 5799999999999999999999887653
No 424
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.11 E-value=0.023 Score=61.87 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC--cceecCCCC--CChHHHHHHHHHHHhhhcc------------c------
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYH--VVEVNASDD--RSSSTIENKILDVVQMNSV------------M------ 367 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~--viEiNaSd~--rs~~~~~~~I~~~~~~~sv------------~------ 367 (948)
...++-|.|.+||||||+++++.+-..-. -|.++.-+. .+.....+++.+.+..-.+ .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 45789999999999999999999865311 122222221 1133344445554442111 0
Q ss_pred ------ccCCCcEEEecCcccccCCChhHHHHHHHHHHh
Q 002241 368 ------ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSA 400 (948)
Q Consensus 368 ------~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~ 400 (948)
-.-+|.+||.||.-.+.- -.....+++++..
T Consensus 118 i~IARALal~P~liV~DEpvSaLD--vSiqaqIlnLL~d 154 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALD--VSVQAQILNLLKD 154 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcc--hhHHHHHHHHHHH
Confidence 034699999999976653 2233344555543
No 425
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.11 E-value=0.19 Score=56.35 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC------CcceecC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGY------HVVEVNA 344 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~------~viEiNa 344 (948)
.+.++.|+|+=|+||||+.+.+-+++.- .++++|+
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~ 59 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNA 59 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEcc
Confidence 3478999999999999999999988743 4777777
No 426
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.03 Score=64.44 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDR 348 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~r 348 (948)
++.++|.||+|+||||++..||.++ |+.|..+.+...|
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4789999999999999999999765 6778777775555
No 427
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.08 E-value=0.0048 Score=63.16 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+.+++|+|++|+||||+|+.+++.++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999875
No 428
>PLN02674 adenylate kinase
Probab=96.07 E-value=0.0054 Score=66.49 Aligned_cols=30 Identities=33% Similarity=0.518 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
...++|.||||+||||++..||+++|+..+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 356889999999999999999999986544
No 429
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.03 E-value=0.01 Score=67.83 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
-.+|+||||||||||++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 469999999999999999998763
No 430
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.03 E-value=0.032 Score=60.10 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..-.++|.||+||||||+.+.+-+-.
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhccc
Confidence 34689999999999999999988743
No 431
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.03 E-value=0.033 Score=65.96 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=48.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHH---Hhh------------hcccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDV---VQM------------NSVMA 368 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~---~~~------------~sv~~ 368 (948)
|.+...++||+|+||+||||++..+|.++ |..++++..-+ +...+..+.... ... .....
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE--s~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE--SLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC--CHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 56778899999999999999999887754 55777776533 222222111100 000 00011
Q ss_pred cCCCcEEEecCccccc
Q 002241 369 DSRPKCLVIDEIDGAL 384 (948)
Q Consensus 369 ~~kp~iLIIDEID~l~ 384 (948)
..++.+||||.|..+.
T Consensus 168 ~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 168 EENPQACVIDSIQTLY 183 (454)
T ss_pred hcCCcEEEEecchhhc
Confidence 3478999999998775
No 432
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.02 E-value=0.015 Score=60.11 Aligned_cols=37 Identities=32% Similarity=0.511 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDD 347 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~ 347 (948)
+.+++|+|++|+||||+|+.++..+ |+.++.++..+.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 4799999999999999999999886 566677765443
No 433
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.01 E-value=0.04 Score=71.06 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=102.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhh--hcc--------cccCCCcEEEecCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQM--NSV--------MADSRPKCLVIDEID 381 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~--~sv--------~~~~kp~iLIIDEID 381 (948)
-.+||-||+.+|||+.+..+|++.|-.++.||.-.... +.+.|...... .++ ..-.+.--||+||..
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTd---lqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELN 965 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTD---LQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELN 965 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccch---HHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccc
Confidence 46999999999999999999999999999999854322 22222222110 000 012345679999997
Q ss_pred cccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec--CCCc--h-hhhhhccceEE
Q 002241 382 GALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN--DLYA--P-ALRSLRQIAKV 456 (948)
Q Consensus 382 ~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN--Dl~~--p-~Lr~Lr~~~~i 456 (948)
-++. ..+++|-.++...+. ... .++|..+ ...-+..+..|-| -.|. . .-|.+|.+...
T Consensus 966 LApT---DVLEaLNRLLDDNRe-----lfI-PETqevV--------~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE 1028 (4600)
T COG5271 966 LAPT---DVLEALNRLLDDNRE-----LFI-PETQEVV--------VPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLE 1028 (4600)
T ss_pred cCcH---HHHHHHHHhhccccc-----eec-CCcceee--------ccCCCeeEEeecCCCccccchHHHHHHHHhhhHh
Confidence 6654 455666666554222 111 1122111 0112222344444 2332 1 23667888888
Q ss_pred EEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC-CHHHHHH
Q 002241 457 HVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC-DIRSCLN 503 (948)
Q Consensus 457 I~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G-DIR~aIn 503 (948)
++|.-...+++..+|. +++.+.+.-.+.|++...| .+|..++
T Consensus 1029 ~hFddipedEle~ILh-----~rc~iapSyakKiVeVyr~Ls~rRs~~ 1071 (4600)
T COG5271 1029 MHFDDIPEDELEEILH-----GRCEIAPSYAKKIVEVYRGLSSRRSIN 1071 (4600)
T ss_pred hhcccCcHHHHHHHHh-----ccCccCHHHHHHHHHHHHHhhhhhhHH
Confidence 9999999999988885 4557788888888886433 5666555
No 434
>PRK12338 hypothetical protein; Provisional
Probab=96.00 E-value=0.0053 Score=68.79 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHV 339 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~v 339 (948)
.+++++|+||+||||+|..||+.+|+..
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 6899999999999999999999999754
No 435
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.99 E-value=0.016 Score=61.04 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAk 333 (948)
..-++.|+||+|+||||+.++|..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 346899999999999999999985
No 436
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.97 E-value=0.048 Score=58.82 Aligned_cols=48 Identities=31% Similarity=0.372 Sum_probs=33.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---------------CCCcceecCCCCCChHHHHHHHHHHHh
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---------------GYHVVEVNASDDRSSSTIENKILDVVQ 362 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---------------G~~viEiNaSd~rs~~~~~~~I~~~~~ 362 (948)
+-||.||||+|||+|+..+|-.. +..|+.+++-+. .+.+..++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~--~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP--REEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC--HHHHHHHHHHHHh
Confidence 57899999999999999888642 245777776543 3355555555443
No 437
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.97 E-value=0.015 Score=60.26 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++|+||+|+||||++++++...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999999999875
No 438
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.96 E-value=0.17 Score=58.74 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=44.0
Q ss_pred EEEEecCCCc-hhhhh-h-ccceEEEEecCcCHHHHHHHHHHHhhhc-CC-------------------CCCHHHHHHHH
Q 002241 435 VICICNDLYA-PALRS-L-RQIAKVHVFIQPSVSRVVSRLKHICNNE-SM-------------------KTSSIALTTLA 491 (948)
Q Consensus 435 II~icNDl~~-p~Lr~-L-r~~~~iI~F~~p~~~~l~~~L~~I~~~E-gi-------------------~id~~~L~~L~ 491 (948)
||++|+|... ..|.. | .+....|.+.-.+.+.-.+++...+..+ .. ..+...+...+
T Consensus 186 VIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i 265 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECI 265 (431)
T ss_pred EEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHH
Confidence 8889888653 33322 2 1355677887777777666666555432 11 13455666667
Q ss_pred HHccCCHHHHHHHHHHHHhc
Q 002241 492 EYTECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~~ 511 (948)
+.-+|-+ ..||+++++
T Consensus 266 ~~LGGRl----tDLe~lvrR 281 (431)
T PF10443_consen 266 EPLGGRL----TDLEFLVRR 281 (431)
T ss_pred HHcCCcH----HHHHHHHHH
Confidence 7677754 367777764
No 439
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.96 E-value=0.012 Score=60.75 Aligned_cols=32 Identities=38% Similarity=0.555 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
++.|.||+|+||||+++.||+++ |+.++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68899999999999999999988 777766543
No 440
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.96 E-value=0.0061 Score=64.29 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=25.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
|...++.|+||+|+|||||+++|+..++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45578999999999999999999998763
No 441
>PRK14529 adenylate kinase; Provisional
Probab=95.95 E-value=0.0095 Score=63.78 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
++|.||||+||||++..||+.+|+..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 788999999999999999999997665
No 442
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.94 E-value=0.012 Score=71.68 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.++.+|+|+|||||||++..+...
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 379999999999999988766543
No 443
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.94 E-value=0.035 Score=59.14 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk 333 (948)
.+++|+||.|+||||+.+.+|-
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999863
No 444
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.93 E-value=0.014 Score=62.33 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=34.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCCcceecCCCCCCh
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---------GYHVVEVNASDDRSS 350 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd~rs~ 350 (948)
|.+...++.|+||||+|||+++..+|-.. +..++.+...+....
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~ 67 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP 67 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCH
Confidence 56778999999999999999999887542 257788877654333
No 445
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.91 E-value=0.035 Score=69.08 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=47.9
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCChH------------------HHHHHHHHHHhhh
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRSSS------------------TIENKILDVVQMN 364 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs~~------------------~~~~~I~~~~~~~ 364 (948)
-|-|...+.+|+||||+|||||+..++.. .|-.++.|......... ..+. +...+.
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~-~l~~i~-- 131 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ-ALEIAD-- 131 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHH-HHHHHH--
Confidence 36788899999999999999999654432 46666666654321110 0011 111111
Q ss_pred cccccCCCcEEEecCcccccC
Q 002241 365 SVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 365 sv~~~~kp~iLIIDEID~l~~ 385 (948)
.+.....+.+||||-|.++..
T Consensus 132 ~lv~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAALVP 152 (790)
T ss_pred HHhhcCCCeEEEEcchhhhcc
Confidence 111245789999999998874
No 446
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.90 E-value=0.015 Score=65.58 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---------hCCCcceecCCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH---------CGYHVVEVNASDD 347 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke---------lG~~viEiNaSd~ 347 (948)
|-|...+..|+||||+|||++++.+|-. .|-.+++|..-..
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 5688899999999999999999977632 2456777776543
No 447
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.0064 Score=62.89 Aligned_cols=30 Identities=43% Similarity=0.750 Sum_probs=24.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
-++|-||||+||||+|+.||+.+| +..+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcH
Confidence 378999999999999999999954 444443
No 448
>PRK08356 hypothetical protein; Provisional
Probab=95.88 E-value=0.0065 Score=63.51 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.+++|+||||+||||+|+.|+ +.|+.++.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is 34 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVS 34 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 578999999999999999996 47776433
No 449
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.032 Score=64.72 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRS 349 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs 349 (948)
.+++++|+||+|+||||++.-+|.++ |..|.-+++-..|.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 35789999999999999999998754 56677776655454
No 450
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.86 E-value=0.03 Score=65.70 Aligned_cols=86 Identities=19% Similarity=0.245 Sum_probs=51.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHh---h------------hcccccC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQ---M------------NSVMADS 370 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~---~------------~sv~~~~ 370 (948)
.++++|.||+|+||||++-.||..+ |+.|..+++...|.+.. +.+..... . ..+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~--eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAV--EQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHH--HHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 3689999999999999888776543 57888888766554321 11111100 0 0001123
Q ss_pred CCcEEEecCcccccCCChhHHHHHHHHHH
Q 002241 371 RPKCLVIDEIDGALGDGKGAVEVILKMVS 399 (948)
Q Consensus 371 kp~iLIIDEID~l~~~~~~~~~~Ll~li~ 399 (948)
...+||||.... ...+...+..|..++.
T Consensus 299 ~~DlVlIDt~G~-~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGR-SQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCC-CCCCHHHHHHHHHHHh
Confidence 578999998844 3334455556666654
No 451
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.85 E-value=0.0067 Score=64.59 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkel 335 (948)
++++|+||+||||++..+++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999985
No 452
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.85 E-value=0.0062 Score=64.08 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=17.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+.++.||||||||+++-.++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 69999999999998666666554
No 453
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.84 E-value=0.0068 Score=63.70 Aligned_cols=33 Identities=42% Similarity=0.671 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
++++|.||+|+|||.+|-++|++.|.+||-.+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr 34 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDR 34 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-S
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecc
Confidence 579999999999999999999999999887665
No 454
>PRK13975 thymidylate kinase; Provisional
Probab=95.84 E-value=0.013 Score=60.97 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHV 339 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~v 339 (948)
+.++|.|++|+||||+++.||+.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 6899999999999999999999998643
No 455
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.065 Score=63.86 Aligned_cols=40 Identities=33% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRS 349 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs 349 (948)
...+++|+||+|+||||++..||..+ |..|..++....|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 35899999999999999998888653 45676666644443
No 456
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.81 E-value=0.0072 Score=63.37 Aligned_cols=40 Identities=30% Similarity=0.543 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCCcceecCCCCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC-GYHVVEVNASDDRS 349 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel-G~~viEiNaSd~rs 349 (948)
.+..++|.|+||+||||++..+..++ +-.++.||+-+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 45899999999999999999999988 77888898876554
No 457
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.81 E-value=0.022 Score=64.30 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
++.+|++||+|+||||++++|+.+.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4789999999999999999999863
No 458
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.80 E-value=0.0074 Score=63.01 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
++-|+||+|+||||+|+.|+..++-
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4779999999999999999999873
No 459
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.79 E-value=0.0073 Score=62.25 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
++.|+|++|+||||+++.+++ +|+.++..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 478999999999999999999 88776543
No 460
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.75 E-value=0.019 Score=71.79 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=42.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---C--CCcceecCCCCCChHHHHH-------HHHHHHhhhcc-------cccCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---G--YHVVEVNASDDRSSSTIEN-------KILDVVQMNSV-------MADSR 371 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G--~~viEiNaSd~rs~~~~~~-------~I~~~~~~~sv-------~~~~k 371 (948)
.++++|+|+|||||||+++++...+ | +. +.+-|..-+....+.+ .|..++....- .....
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~-v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~ 416 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLP-VGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPID 416 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCce-EEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhcccc
Confidence 4699999999999999999887654 4 33 3344443333322222 12222221100 00134
Q ss_pred CcEEEecCcccc
Q 002241 372 PKCLVIDEIDGA 383 (948)
Q Consensus 372 p~iLIIDEID~l 383 (948)
..+|||||+..+
T Consensus 417 ~~llIvDEaSMv 428 (720)
T TIGR01448 417 CDLLIVDESSMM 428 (720)
T ss_pred CCEEEEeccccC
Confidence 679999999766
No 461
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.75 E-value=0.25 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
-+++.|++|+||||++.-|...+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc
Confidence 588999999999999998887764
No 462
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.74 E-value=0.0073 Score=61.84 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
++++|.||+|+||||+++.|++..+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 68999999999999999999997644
No 463
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.013 Score=65.14 Aligned_cols=53 Identities=34% Similarity=0.516 Sum_probs=41.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC----hHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS----SSTIENKILDVVQ 362 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs----~~~~~~~I~~~~~ 362 (948)
.+|.+|+.||+|+|||-+|+-||+-+|..++-+.|+-..- +..++..+++.+.
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve 105 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVE 105 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHH
Confidence 4589999999999999999999999999999999986422 2344555555443
No 464
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.73 E-value=0.08 Score=59.32 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=102.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHh---hhcccccCCCcEEEecCcccccC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQ---MNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~---~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
-.|||.|.+||||-.+|++|-... ...++-+|+...-....-.+.+..+-+ ...++......-+++|||.-++.
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp 307 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP 307 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH
Confidence 469999999999999999886543 457888998754332111111111111 00111123456799999988854
Q ss_pred CChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh--hhhcc----ceEEEEe
Q 002241 386 DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL--RSLRQ----IAKVHVF 459 (948)
Q Consensus 386 ~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L--r~Lr~----~~~iI~F 459 (948)
..+-.|+.+++++.-. ++ +++.+ ......|||.+.-...... ..+|. +-.++.+
T Consensus 308 ---~lQaKLLRFL~DGtFR---RV--Gee~E------------v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl 367 (511)
T COG3283 308 ---RLQAKLLRFLNDGTFR---RV--GEDHE------------VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTL 367 (511)
T ss_pred ---HHHHHHHHHhcCCcee---ec--CCcce------------EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeee
Confidence 4566788888764321 11 11111 1234567777653211111 11111 2233444
Q ss_pred cCcCHH-------H-HHHHHHHHhhhcCC---CCCHHHHHHHHHH-ccCCHHHHHHHHHHHHh
Q 002241 460 IQPSVS-------R-VVSRLKHICNNESM---KTSSIALTTLAEY-TECDIRSCLNTLQFLDK 510 (948)
Q Consensus 460 ~~p~~~-------~-l~~~L~~I~~~Egi---~id~~~L~~L~e~-s~GDIR~aIn~LQ~~~~ 510 (948)
+-|... - ..-.+..+|.+.|+ +++++.+..|..+ -.|++|+.-|.+--++.
T Consensus 368 ~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 368 NLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred cCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 433332 1 22346788888887 4567888888876 47999999999876654
No 465
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.72 E-value=0.019 Score=65.80 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
....++++||+|+||||+++++++++
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999886
No 466
>PLN02459 probable adenylate kinase
Probab=95.72 E-value=0.011 Score=64.53 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=24.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++|.||||+||||++..||+.+|+..+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47778999999999999999999875443
No 467
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.72 E-value=0.0083 Score=67.45 Aligned_cols=31 Identities=35% Similarity=0.511 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
...++|+|++||||||+++.||+++|+.++.
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 3689999999999999999999999999884
No 468
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.70 E-value=0.017 Score=58.38 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHhC----CCcceecC
Q 002241 312 KVLLLCGPPGLGKTT-LAHVAAKHCG----YHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTT-LA~~lAkelG----~~viEiNa 344 (948)
+.++++||+|+|||+ ++..+...+. ..++.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 689999999999999 5555555443 23555544
No 469
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.70 E-value=0.022 Score=64.56 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.+.++|.|++|+|||||++.|++.+|+.++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4678999999999999999999999887653
No 470
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.67 E-value=0.019 Score=60.33 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk 333 (948)
+.++|+||.|+||||+.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999883
No 471
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.67 E-value=0.015 Score=65.35 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+..++++||+|+||||++++++..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccC
Confidence 3789999999999999999999876
No 472
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.66 E-value=0.0083 Score=62.53 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh-CCCcc
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC-GYHVV 340 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel-G~~vi 340 (948)
++.+.|++|+||||+|+.|++.+ +..++
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 47899999999999999999998 44433
No 473
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.66 E-value=0.01 Score=63.35 Aligned_cols=29 Identities=34% Similarity=0.675 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
.++.|.||+|+||||+++.||+++|+.++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999998766
No 474
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.64 E-value=0.013 Score=61.83 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+.++.|+||+|+|||||++.|++.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999984
No 475
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.63 E-value=0.043 Score=70.79 Aligned_cols=38 Identities=37% Similarity=0.632 Sum_probs=35.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~ 347 (948)
..|.+||-|.||+|||+|+.++|+..|-..+.||-|+.
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ 1579 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ 1579 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc
Confidence 35889999999999999999999999999999999874
No 476
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.63 E-value=0.011 Score=57.33 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHV 339 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~v 339 (948)
..+++|+|+=|+||||+++.+|+.+|..-
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 47999999999999999999999998653
No 477
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.61 E-value=0.011 Score=61.99 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
+.+.++.|+|++|+||||+|+.|++.+ |+.++.++..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 345799999999999999999999976 5666777553
No 478
>PTZ00202 tuzin; Provisional
Probab=95.60 E-value=0.028 Score=65.05 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS 345 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaS 345 (948)
..++++|+||+|||||||++.++..++...+.+|..
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 346999999999999999999999998766666664
No 479
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.59 E-value=0.071 Score=57.22 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
-.+=|.|++|+|||||.++||.-+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCcc
Confidence 468899999999999999999754
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.58 E-value=0.011 Score=60.98 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
.+++|+||+|+||||++++++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 579999999999999999999998763
No 481
>PRK05973 replicative DNA helicase; Provisional
Probab=95.58 E-value=0.02 Score=61.89 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=34.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHH
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKI 357 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I 357 (948)
|-+....+||.|+||+|||+++--+|.+. |..++.+..- .+...+..+.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE--es~~~i~~R~ 111 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE--YTEQDVRDRL 111 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe--CCHHHHHHHH
Confidence 45667899999999999999988777654 8778777442 2344444433
No 482
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.57 E-value=0.1 Score=58.28 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHH-HHHH--HhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAH-VAAK--HCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~-~lAk--elG~~viE 341 (948)
+.+++.||.|+|||+++. +++. +.|-+++-
T Consensus 50 nsviiigprgsgkT~li~~~Ls~~q~~~E~~l~ 82 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSDIQENGENFLL 82 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhhHHhcCCeEEE
Confidence 579999999999999765 4444 56655443
No 483
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.55 E-value=0.03 Score=70.31 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
++.+|.|+|||||||++.++... .|+.|+-+-.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~Ap 404 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAAL 404 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 68999999999999999988654 4888776644
No 484
>PRK06761 hypothetical protein; Provisional
Probab=95.55 E-value=0.012 Score=65.02 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
++++|+||||+||||+++.++++++...+.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 6899999999999999999999986543333
No 485
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.024 Score=57.94 Aligned_cols=39 Identities=31% Similarity=0.538 Sum_probs=32.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRS 349 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs 349 (948)
+.++.|+|.+|+||||+|.++++.+ |+.++-++.-..|.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 3689999999999999999999875 89988888765543
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.54 E-value=0.011 Score=61.82 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
..+++|.||+|+|||||++.|++.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 47899999999999999999999875
No 487
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.54 E-value=0.011 Score=61.88 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+.+.|+|++|+||||+++.+++.+|+.++.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 478999999999999999999988988773
No 488
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.52 E-value=0.013 Score=62.86 Aligned_cols=30 Identities=40% Similarity=0.724 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++.|.||+|+||||+++.||+++|+.++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 688999999999999999999999987654
No 489
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.52 E-value=0.013 Score=65.21 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
+-+++++|++|+||||+|..||+.+|+.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999887
No 490
>PLN02199 shikimate kinase
Probab=95.52 E-value=0.012 Score=65.10 Aligned_cols=32 Identities=31% Similarity=0.559 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
+.++|.|.+|+||||+++.+|+.+|+.++..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 68999999999999999999999999988654
No 491
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.51 E-value=0.1 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lA 332 (948)
+..+|+||.|+|||++.++++
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999865
No 492
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.50 E-value=0.024 Score=63.69 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=37.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCCcceecCCCCCChHHHHH
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---------GYHVVEVNASDDRSSSTIEN 355 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd~rs~~~~~~ 355 (948)
|-|...+.+|+||||+|||+++..+|-.+ +-.+++|..-..-+.+.+.+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~ 148 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ 148 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH
Confidence 56778999999999999999999888663 23788888765445544443
No 493
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.50 E-value=0.027 Score=65.72 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=33.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRS 349 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs 349 (948)
+.+++|+||+|+||||++--||..+ |+.|.-+.+-..|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 4799999999999999999888765 88888888766564
No 494
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.014 Score=58.24 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
|.+-.+++.|+.|+||||++.+++.++|+.+++
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~d 42 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFID 42 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccc
Confidence 444589999999999999999999999988765
No 495
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.47 E-value=0.011 Score=60.99 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
++.|+|++|+||||+|+.|+..+ |..+.-++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~ 35 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISL 35 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEeh
Confidence 47899999999999999999987 455555544
No 496
>PRK10867 signal recognition particle protein; Provisional
Probab=95.45 E-value=0.031 Score=65.54 Aligned_cols=40 Identities=35% Similarity=0.343 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRSS 350 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs~ 350 (948)
+.+++|+||+|+||||++--+|..+ |+.|.-+++-..|..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 4899999999999999777776643 888888888665554
No 497
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.40 E-value=0.074 Score=56.95 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAk 333 (948)
..++++|+||.|+||||+.+.+|.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999997764
No 498
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.39 E-value=0.012 Score=73.57 Aligned_cols=32 Identities=28% Similarity=0.640 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
.+.|.||||+||||+|+.||+.+||.++...+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~ 34 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGA 34 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCc
Confidence 57899999999999999999999987765443
No 499
>PLN02748 tRNA dimethylallyltransferase
Probab=95.39 E-value=0.014 Score=68.73 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
+..++++|.||+|+|||+||..||+++++++|..+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~D 54 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINAD 54 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCc
Confidence 44578999999999999999999999987766443
No 500
>PTZ00301 uridine kinase; Provisional
Probab=95.37 E-value=0.013 Score=62.11 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+.++.|.||||+||||+|+.|++++
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4688899999999999999999876
Done!