Query 002241
Match_columns 948
No_of_seqs 551 out of 3494
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_A Activator 1 95 kDa subu 100.0 3.4E-49 1.2E-53 467.2 27.6 432 193-739 23-473 (516)
2 3u61_B DNA polymerase accessor 100.0 2.6E-27 8.9E-32 262.8 22.8 284 194-617 11-302 (324)
3 1sxj_E Activator 1 40 kDa subu 99.9 2.9E-25 9.9E-30 248.8 23.8 252 314-614 39-331 (354)
4 1sxj_C Activator 1 40 kDa subu 99.9 6.3E-24 2.2E-28 237.7 25.2 288 194-613 10-308 (340)
5 2chq_A Replication factor C sm 99.9 4.7E-24 1.6E-28 234.3 20.1 287 196-615 4-296 (319)
6 1iqp_A RFCS; clamp loader, ext 99.9 1.5E-23 5.1E-28 231.1 24.2 288 195-615 11-304 (327)
7 1sxj_D Activator 1 41 kDa subu 99.9 1.4E-23 4.8E-28 234.3 23.8 291 193-614 21-332 (353)
8 1sxj_B Activator 1 37 kDa subu 99.9 4.4E-22 1.5E-26 218.9 21.8 204 195-511 7-215 (323)
9 2chg_A Replication factor C sm 99.9 8.7E-21 3E-25 195.5 20.6 203 196-512 4-211 (226)
10 1jr3_A DNA polymerase III subu 99.9 2.4E-20 8.1E-25 209.7 25.2 232 196-544 3-259 (373)
11 3pvs_A Replication-associated 99.8 2.6E-20 8.9E-25 216.1 22.8 163 312-511 51-221 (447)
12 3pfi_A Holliday junction ATP-d 99.8 2.9E-19 1E-23 199.0 20.9 217 194-509 14-231 (338)
13 1njg_A DNA polymerase III subu 99.8 5E-19 1.7E-23 184.3 19.4 200 195-510 9-233 (250)
14 3vfd_A Spastin; ATPase, microt 99.8 3.2E-18 1.1E-22 195.1 19.8 215 196-508 102-328 (389)
15 4b4t_J 26S protease regulatory 99.8 1E-17 3.5E-22 189.9 21.4 179 307-512 178-372 (405)
16 4b4t_I 26S protease regulatory 99.8 1.1E-17 3.8E-22 190.2 20.8 222 196-512 169-406 (437)
17 4b4t_L 26S protease subunit RP 99.7 8.2E-18 2.8E-22 193.3 16.8 178 307-511 211-404 (437)
18 1hqc_A RUVB; extended AAA-ATPa 99.7 2.3E-17 7.7E-22 182.1 19.4 214 198-509 1-215 (324)
19 4b4t_M 26S protease regulatory 99.7 8E-18 2.7E-22 193.3 16.2 221 196-511 168-404 (434)
20 3eie_A Vacuolar protein sortin 99.7 2.5E-17 8.4E-22 183.0 18.9 215 197-510 6-236 (322)
21 2qp9_X Vacuolar protein sortin 99.7 2.6E-17 9.1E-22 185.5 17.6 217 196-511 38-270 (355)
22 4b4t_K 26S protease regulatory 99.7 4.5E-17 1.5E-21 186.9 19.6 179 307-512 202-397 (428)
23 4b4t_H 26S protease regulatory 99.7 2.6E-17 8.8E-22 188.8 16.9 178 307-511 239-432 (467)
24 3b9p_A CG5977-PA, isoform A; A 99.7 8E-17 2.7E-21 176.0 20.0 212 197-505 9-232 (297)
25 3uk6_A RUVB-like 2; hexameric 99.7 1.4E-16 4.6E-21 179.2 20.9 176 311-510 70-308 (368)
26 3d8b_A Fidgetin-like protein 1 99.7 2E-16 6.9E-21 178.4 19.3 209 199-505 74-298 (357)
27 1lv7_A FTSH; alpha/beta domain 99.7 1.8E-16 6.2E-21 169.8 17.6 214 198-510 1-233 (257)
28 3bos_A Putative DNA replicatio 99.7 2.3E-16 8E-21 165.2 17.6 160 312-510 53-222 (242)
29 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.3E-15 4.4E-20 162.8 20.4 176 308-509 36-229 (262)
30 1xwi_A SKD1 protein; VPS4B, AA 99.7 9.1E-16 3.1E-20 170.7 19.6 171 310-510 44-231 (322)
31 3h4m_A Proteasome-activating n 99.7 4.8E-16 1.6E-20 168.7 15.0 220 197-511 5-240 (285)
32 2zan_A Vacuolar protein sortin 99.7 3.6E-16 1.2E-20 181.4 14.3 220 196-510 121-353 (444)
33 2qby_B CDC6 homolog 3, cell di 99.6 6.2E-16 2.1E-20 174.3 14.1 202 195-510 9-250 (384)
34 1fnn_A CDC6P, cell division co 99.6 4.1E-15 1.4E-19 167.6 19.4 210 196-510 7-252 (389)
35 3syl_A Protein CBBX; photosynt 99.6 2E-15 6.9E-20 165.5 16.1 166 311-510 67-260 (309)
36 1in4_A RUVB, holliday junction 99.6 1.1E-14 3.9E-19 162.5 21.6 214 196-508 12-226 (334)
37 2c9o_A RUVB-like 1; hexameric 99.6 6.5E-15 2.2E-19 171.4 20.1 62 447-508 351-413 (456)
38 3te6_A Regulatory protein SIR3 99.6 4.9E-15 1.7E-19 164.0 17.1 170 311-510 45-284 (318)
39 3cf2_A TER ATPase, transitiona 99.6 1.7E-15 5.8E-20 185.5 14.6 174 307-510 234-423 (806)
40 3cf0_A Transitional endoplasmi 99.6 1.1E-15 3.9E-20 168.1 10.8 173 309-511 47-238 (301)
41 2ce7_A Cell division protein F 99.6 1.1E-14 3.9E-19 169.4 19.4 171 310-510 48-237 (476)
42 2v1u_A Cell division control p 99.6 3.3E-15 1.1E-19 167.9 13.8 173 312-509 45-253 (387)
43 1l8q_A Chromosomal replication 99.6 1.5E-14 5.2E-19 160.2 17.6 164 312-511 38-214 (324)
44 1a5t_A Delta prime, HOLB; zinc 99.6 8.2E-15 2.8E-19 163.6 15.1 158 311-508 24-208 (334)
45 2gno_A DNA polymerase III, gam 99.6 1.3E-14 4.4E-19 160.2 16.2 150 312-507 19-175 (305)
46 3hu3_A Transitional endoplasmi 99.6 1.2E-14 4E-19 170.3 13.8 171 310-510 237-423 (489)
47 2z4s_A Chromosomal replication 99.5 1.5E-14 5.1E-19 167.6 12.5 166 311-510 130-311 (440)
48 1ofh_A ATP-dependent HSL prote 99.5 7E-14 2.4E-18 152.7 15.9 180 312-509 51-270 (310)
49 3pxg_A Negative regulator of g 99.5 2E-14 6.7E-19 167.9 10.6 192 196-509 167-382 (468)
50 2qby_A CDC6 homolog 1, cell di 99.5 1E-13 3.5E-18 155.4 15.7 166 312-509 46-249 (386)
51 1d2n_A N-ethylmaleimide-sensit 99.5 8.4E-14 2.9E-18 150.4 14.0 169 309-510 62-247 (272)
52 2r62_A Cell division protease 99.5 1.3E-15 4.6E-20 163.8 -0.3 168 311-511 44-235 (268)
53 2dhr_A FTSH; AAA+ protein, hex 99.5 1.5E-13 5E-18 161.0 16.5 174 310-511 63-253 (499)
54 1jbk_A CLPB protein; beta barr 99.5 3.7E-14 1.3E-18 142.3 9.9 162 197-471 10-194 (195)
55 3t15_A Ribulose bisphosphate c 99.5 1.8E-13 6.1E-18 150.1 15.8 174 307-499 32-221 (293)
56 2r44_A Uncharacterized protein 99.5 1.1E-13 3.6E-18 153.8 12.8 210 197-509 15-274 (331)
57 3cf2_A TER ATPase, transitiona 99.5 3E-14 1E-18 174.5 7.6 179 303-511 503-700 (806)
58 2p65_A Hypothetical protein PF 99.4 1.8E-13 6.3E-18 137.1 10.2 155 196-463 9-187 (187)
59 1ixz_A ATP-dependent metallopr 99.4 8.4E-13 2.9E-17 141.0 15.5 169 311-510 49-237 (254)
60 1qvr_A CLPB protein; coiled co 99.4 2E-13 6.7E-18 170.7 12.2 202 196-510 157-390 (854)
61 1jr3_D DNA polymerase III, del 99.4 1.2E-12 3.9E-17 146.3 16.9 195 310-545 17-225 (343)
62 4fcw_A Chaperone protein CLPB; 99.4 1.4E-12 4.8E-17 142.8 15.5 171 312-510 48-276 (311)
63 3pxi_A Negative regulator of g 99.4 7.2E-13 2.5E-17 163.5 12.1 192 196-509 167-382 (758)
64 3hws_A ATP-dependent CLP prote 99.4 1.1E-12 3.8E-17 147.8 12.2 191 310-509 50-319 (363)
65 2bjv_A PSP operon transcriptio 99.4 3.3E-12 1.1E-16 137.2 14.4 178 312-510 30-238 (265)
66 1iy2_A ATP-dependent metallopr 99.4 7.4E-12 2.5E-16 135.7 17.0 171 312-510 74-261 (278)
67 1r6b_X CLPA protein; AAA+, N-t 99.4 2.8E-12 9.5E-17 158.2 14.3 191 196-496 173-387 (758)
68 2x8a_A Nuclear valosin-contain 99.3 5.9E-12 2E-16 136.8 14.7 173 310-511 43-235 (274)
69 3m6a_A ATP-dependent protease 99.3 5.4E-12 1.8E-16 149.9 15.0 182 311-510 108-313 (543)
70 1ypw_A Transitional endoplasmi 99.3 4.1E-12 1.4E-16 157.4 13.9 165 308-502 235-411 (806)
71 1um8_A ATP-dependent CLP prote 99.3 5.3E-12 1.8E-16 142.9 13.2 193 311-510 72-337 (376)
72 1g8p_A Magnesium-chelatase 38 99.3 1.3E-11 4.5E-16 137.2 11.6 121 371-509 144-299 (350)
73 1w5s_A Origin recognition comp 99.3 5.9E-11 2E-15 134.7 17.2 175 312-509 51-270 (412)
74 1r6b_X CLPA protein; AAA+, N-t 99.2 3.3E-11 1.1E-15 148.7 13.4 172 312-509 489-712 (758)
75 3pxi_A Negative regulator of g 99.2 7.9E-11 2.7E-15 145.3 13.8 169 313-507 523-719 (758)
76 3ec2_A DNA replication protein 99.2 6.4E-11 2.2E-15 119.6 9.7 82 312-400 39-128 (180)
77 1ojl_A Transcriptional regulat 99.1 1.7E-10 5.8E-15 127.1 12.7 178 312-510 26-233 (304)
78 1ypw_A Transitional endoplasmi 99.1 3.1E-12 1.1E-16 158.6 -2.1 180 307-512 507-701 (806)
79 1qvr_A CLPB protein; coiled co 99.1 2.3E-10 8E-15 142.9 14.5 172 312-509 589-816 (854)
80 1u0j_A DNA replication protein 99.0 8.8E-10 3E-14 118.5 12.7 139 309-483 102-258 (267)
81 1g41_A Heat shock protein HSLU 99.0 2E-09 6.9E-14 123.9 13.4 118 372-509 251-404 (444)
82 3n70_A Transport activator; si 99.0 3E-09 1E-13 103.9 11.7 73 312-398 25-100 (145)
83 3k1j_A LON protease, ATP-depen 98.9 2.4E-08 8.1E-13 120.1 19.3 126 371-509 201-352 (604)
84 3co5_A Putative two-component 98.9 1E-09 3.4E-14 107.2 5.0 74 312-400 28-101 (143)
85 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 5.2E-09 1.8E-13 122.7 10.7 172 312-506 42-260 (500)
86 2w58_A DNAI, primosome compone 98.8 5.2E-09 1.8E-13 107.3 9.1 67 312-384 55-128 (202)
87 2qen_A Walker-type ATPase; unk 98.8 1.3E-07 4.6E-12 104.1 18.8 159 312-501 32-242 (350)
88 1tue_A Replication protein E1; 98.8 1.6E-08 5.5E-13 104.4 9.9 123 307-462 54-179 (212)
89 2qgz_A Helicase loader, putati 98.8 5.3E-09 1.8E-13 115.4 6.4 66 312-383 153-226 (308)
90 2kjq_A DNAA-related protein; s 98.7 3E-08 1E-12 97.7 8.9 72 310-400 35-109 (149)
91 2fna_A Conserved hypothetical 98.6 5.9E-07 2E-11 99.1 15.9 161 312-503 31-248 (357)
92 4akg_A Glutathione S-transfera 98.5 1.8E-07 6E-12 127.3 11.0 151 311-477 1267-1433(2695)
93 3dzd_A Transcriptional regulat 98.4 8.7E-07 3E-11 100.1 10.7 176 312-511 153-360 (368)
94 3f9v_A Minichromosome maintena 98.4 6.5E-08 2.2E-12 116.0 1.3 161 312-492 328-512 (595)
95 3upu_A ATP-dependent DNA helic 98.3 7.9E-07 2.7E-11 103.3 9.3 34 193-226 8-42 (459)
96 1ye8_A Protein THEP1, hypothet 98.2 4.3E-06 1.5E-10 84.7 11.2 25 313-337 2-26 (178)
97 1ny5_A Transcriptional regulat 98.1 8.5E-06 2.9E-10 92.6 11.0 175 312-510 161-368 (387)
98 2vhj_A Ntpase P4, P4; non- hyd 98.1 5.2E-06 1.8E-10 91.5 8.4 71 307-385 119-196 (331)
99 4akg_A Glutathione S-transfera 98.0 1.9E-05 6.5E-10 107.7 13.8 156 311-490 645-805 (2695)
100 3vkg_A Dynein heavy chain, cyt 97.9 1.1E-05 3.8E-10 110.6 9.5 150 311-476 1304-1470(3245)
101 2w0m_A SSO2452; RECA, SSPF, un 97.8 8.5E-05 2.9E-09 76.6 11.2 37 308-344 20-59 (235)
102 2cvh_A DNA repair and recombin 97.7 0.00016 5.6E-09 74.1 11.1 40 307-346 16-55 (220)
103 3cmu_A Protein RECA, recombina 97.6 0.00013 4.6E-09 96.6 10.9 76 307-385 1423-1519(2050)
104 3crm_A TRNA delta(2)-isopenten 97.6 3.9E-05 1.3E-09 84.8 4.6 157 311-514 5-176 (323)
105 2i3b_A HCR-ntpase, human cance 97.5 0.00022 7.6E-09 72.8 8.5 24 312-335 2-25 (189)
106 2zr9_A Protein RECA, recombina 97.5 0.00035 1.2E-08 78.2 10.9 75 307-384 57-152 (349)
107 3hr8_A Protein RECA; alpha and 97.5 0.00039 1.3E-08 77.9 11.0 76 307-385 57-153 (356)
108 3vkg_A Dynein heavy chain, cyt 97.4 0.0011 3.6E-08 91.6 16.7 175 312-508 605-796 (3245)
109 2r2a_A Uncharacterized protein 97.4 0.00014 5E-09 74.9 6.2 23 312-334 6-28 (199)
110 1u94_A RECA protein, recombina 97.4 0.00048 1.6E-08 77.3 10.6 73 307-385 59-155 (356)
111 2dr3_A UPF0273 protein PH0284; 97.4 0.00066 2.3E-08 70.7 10.8 38 307-344 19-59 (247)
112 1n0w_A DNA repair protein RAD5 97.4 0.00047 1.6E-08 71.8 9.6 40 307-346 20-68 (243)
113 1z6t_A APAF-1, apoptotic prote 97.4 0.0035 1.2E-07 74.5 18.2 154 312-509 148-332 (591)
114 2b8t_A Thymidine kinase; deoxy 97.3 0.00048 1.6E-08 72.3 9.3 34 311-344 12-48 (223)
115 3trf_A Shikimate kinase, SK; a 97.3 0.0001 3.4E-09 74.0 3.9 32 311-342 5-36 (185)
116 1xp8_A RECA protein, recombina 97.3 0.00069 2.4E-08 76.3 11.0 76 307-385 70-166 (366)
117 2rhm_A Putative kinase; P-loop 97.3 0.00015 5E-09 73.0 4.6 32 310-341 4-35 (193)
118 1qhx_A CPT, protein (chloramph 97.3 0.00015 5E-09 72.2 4.4 32 312-343 4-35 (178)
119 3kb2_A SPBC2 prophage-derived 97.3 0.00016 5.5E-09 71.1 4.3 32 312-343 2-33 (173)
120 3cmw_A Protein RECA, recombina 97.2 0.00037 1.3E-08 91.5 8.4 76 307-385 1078-1174(1706)
121 3vaa_A Shikimate kinase, SK; s 97.2 0.00016 5.4E-09 73.9 4.0 33 310-342 24-56 (199)
122 2z43_A DNA repair and recombin 97.2 0.00037 1.3E-08 77.0 6.8 41 307-347 103-152 (324)
123 2orw_A Thymidine kinase; TMTK, 97.2 0.00028 9.6E-09 71.6 4.8 33 312-344 4-39 (184)
124 2ze6_A Isopentenyl transferase 97.1 0.00023 7.9E-09 75.9 4.3 33 312-344 2-34 (253)
125 1svm_A Large T antigen; AAA+ f 97.1 0.00041 1.4E-08 78.4 6.5 66 307-385 165-230 (377)
126 2r8r_A Sensor protein; KDPD, P 97.1 0.0027 9.1E-08 66.6 11.9 35 312-346 7-44 (228)
127 3iij_A Coilin-interacting nucl 97.1 0.00022 7.5E-09 71.3 3.6 32 311-342 11-42 (180)
128 2ehv_A Hypothetical protein PH 97.1 0.0012 4.1E-08 68.9 9.1 26 307-332 26-51 (251)
129 2iyv_A Shikimate kinase, SK; t 97.1 0.00024 8.3E-09 71.1 3.5 31 312-342 3-33 (184)
130 1y63_A LMAJ004144AAA protein; 97.1 0.00024 8.2E-09 71.6 3.5 33 310-342 9-42 (184)
131 4a74_A DNA repair and recombin 97.1 0.0011 3.7E-08 68.3 8.4 40 307-346 21-69 (231)
132 2a5y_B CED-4; apoptosis; HET: 97.1 0.0039 1.3E-07 73.8 14.3 147 311-498 152-330 (549)
133 1zuh_A Shikimate kinase; alpha 97.1 0.00028 9.7E-09 69.6 3.8 32 311-342 7-38 (168)
134 3lw7_A Adenylate kinase relate 97.1 0.00026 8.9E-09 69.3 3.5 30 312-342 2-31 (179)
135 1ex7_A Guanylate kinase; subst 97.0 0.0052 1.8E-07 62.5 13.1 25 312-336 2-26 (186)
136 2cdn_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 70.9 4.6 33 310-342 19-51 (201)
137 3t61_A Gluconokinase; PSI-biol 97.0 0.00038 1.3E-08 71.0 4.6 31 311-341 18-48 (202)
138 1kag_A SKI, shikimate kinase I 97.0 0.0003 1E-08 69.5 3.7 29 312-340 5-33 (173)
139 1v5w_A DMC1, meiotic recombina 97.0 0.001 3.5E-08 74.2 8.4 41 307-347 118-167 (343)
140 3io5_A Recombination and repai 97.0 0.0026 9E-08 69.9 11.3 78 307-385 25-125 (333)
141 1via_A Shikimate kinase; struc 97.0 0.00029 1E-08 70.1 3.5 30 312-341 5-34 (175)
142 1ly1_A Polynucleotide kinase; 97.0 0.00027 9.1E-09 70.1 2.9 30 312-341 3-33 (181)
143 2vli_A Antibiotic resistance p 97.0 0.00028 9.5E-09 70.4 2.9 30 311-340 5-34 (183)
144 1cr0_A DNA primase/helicase; R 97.0 0.0029 9.8E-08 68.5 11.1 37 307-343 31-71 (296)
145 1e6c_A Shikimate kinase; phosp 97.0 0.00034 1.2E-08 69.0 3.4 30 312-341 3-32 (173)
146 1nlf_A Regulatory protein REPA 97.0 0.0022 7.6E-08 68.9 9.9 29 307-335 26-54 (279)
147 2c95_A Adenylate kinase 1; tra 96.9 0.00043 1.5E-08 69.7 3.9 32 311-342 9-40 (196)
148 1tev_A UMP-CMP kinase; ploop, 96.9 0.00041 1.4E-08 69.5 3.7 30 312-341 4-33 (196)
149 3umf_A Adenylate kinase; rossm 96.9 0.00045 1.5E-08 72.2 3.9 32 309-340 27-58 (217)
150 1qf9_A UMP/CMP kinase, protein 96.9 0.00052 1.8E-08 68.6 4.3 31 311-341 6-36 (194)
151 3cm0_A Adenylate kinase; ATP-b 96.9 0.00042 1.4E-08 69.3 3.5 30 312-341 5-34 (186)
152 1kht_A Adenylate kinase; phosp 96.9 0.0004 1.4E-08 69.5 3.1 25 312-336 4-28 (192)
153 2bwj_A Adenylate kinase 5; pho 96.9 0.00049 1.7E-08 69.4 3.6 31 312-342 13-43 (199)
154 1ukz_A Uridylate kinase; trans 96.9 0.00059 2E-08 69.4 4.2 33 310-342 14-46 (203)
155 3sfz_A APAF-1, apoptotic pepti 96.9 0.0082 2.8E-07 77.0 15.7 145 312-499 148-322 (1249)
156 2r6a_A DNAB helicase, replicat 96.9 0.0046 1.6E-07 71.5 12.1 38 307-344 199-240 (454)
157 2i1q_A DNA repair and recombin 96.8 0.0012 4.2E-08 72.5 6.9 41 307-347 94-153 (322)
158 3lda_A DNA repair protein RAD5 96.8 0.0024 8.3E-08 72.7 9.4 41 307-347 174-223 (400)
159 1pzn_A RAD51, DNA repair and r 96.8 0.0014 4.9E-08 73.2 7.4 40 307-346 127-175 (349)
160 2pez_A Bifunctional 3'-phospho 96.8 0.00071 2.4E-08 67.5 4.4 33 311-343 5-40 (179)
161 1knq_A Gluconate kinase; ALFA/ 96.8 0.00067 2.3E-08 67.3 4.1 31 311-341 8-38 (175)
162 1zp6_A Hypothetical protein AT 96.8 0.00054 1.8E-08 68.8 3.3 35 310-344 8-42 (191)
163 3zvl_A Bifunctional polynucleo 96.8 0.0015 5.3E-08 74.6 7.5 51 308-360 255-305 (416)
164 4eun_A Thermoresistant glucoki 96.8 0.00071 2.4E-08 69.0 4.1 31 310-340 28-58 (200)
165 1zd8_A GTP:AMP phosphotransfer 96.8 0.0006 2.1E-08 70.9 3.5 32 311-342 7-38 (227)
166 2pt5_A Shikimate kinase, SK; a 96.8 0.00069 2.4E-08 66.6 3.7 29 313-341 2-30 (168)
167 3be4_A Adenylate kinase; malar 96.8 0.00057 2E-08 70.7 3.2 31 312-342 6-36 (217)
168 3dl0_A Adenylate kinase; phosp 96.8 0.00074 2.5E-08 69.5 3.9 30 313-342 2-31 (216)
169 1aky_A Adenylate kinase; ATP:A 96.7 0.00075 2.6E-08 69.8 4.0 31 312-342 5-35 (220)
170 3fb4_A Adenylate kinase; psych 96.7 0.00077 2.6E-08 69.3 4.0 30 313-342 2-31 (216)
171 3cmu_A Protein RECA, recombina 96.7 0.0028 9.4E-08 84.4 10.0 77 307-385 1077-1173(2050)
172 1zak_A Adenylate kinase; ATP:A 96.7 0.00075 2.6E-08 69.9 3.7 30 312-341 6-35 (222)
173 1gvn_B Zeta; postsegregational 96.7 0.001 3.5E-08 72.2 4.7 34 311-344 33-66 (287)
174 3cmw_A Protein RECA, recombina 96.7 0.0034 1.2E-07 82.5 10.2 73 307-385 728-824 (1706)
175 1g5t_A COB(I)alamin adenosyltr 96.7 0.0032 1.1E-07 64.6 7.9 32 312-343 29-63 (196)
176 2p5t_B PEZT; postsegregational 96.7 0.00083 2.8E-08 71.4 3.7 37 311-347 32-68 (253)
177 1w4r_A Thymidine kinase; type 96.7 0.0028 9.6E-08 64.9 7.4 74 310-383 19-103 (195)
178 1ak2_A Adenylate kinase isoenz 96.6 0.001 3.6E-08 69.5 4.1 31 312-342 17-47 (233)
179 2pbr_A DTMP kinase, thymidylat 96.6 0.0012 4E-08 66.2 4.1 31 313-343 2-35 (195)
180 2zts_A Putative uncharacterize 96.6 0.0056 1.9E-07 63.6 9.5 38 307-344 26-67 (251)
181 3tlx_A Adenylate kinase 2; str 96.6 0.0011 3.7E-08 70.1 3.8 32 311-342 29-60 (243)
182 2q6t_A DNAB replication FORK h 96.6 0.0095 3.3E-07 68.6 12.0 39 306-344 195-237 (444)
183 1cke_A CK, MSSA, protein (cyti 96.6 0.0013 4.4E-08 68.0 4.3 30 312-341 6-35 (227)
184 2wwf_A Thymidilate kinase, put 96.6 0.00095 3.3E-08 68.1 3.1 30 311-340 10-39 (212)
185 1nks_A Adenylate kinase; therm 96.5 0.00073 2.5E-08 67.5 2.2 31 312-342 2-35 (194)
186 3sr0_A Adenylate kinase; phosp 96.5 0.0012 4E-08 68.3 3.7 28 313-340 2-29 (206)
187 1e4v_A Adenylate kinase; trans 96.5 0.0013 4.3E-08 67.8 3.8 30 313-342 2-31 (214)
188 2fz4_A DNA repair protein RAD2 96.5 0.0054 1.8E-07 64.5 8.8 33 313-345 110-142 (237)
189 3ake_A Cytidylate kinase; CMP 96.5 0.0015 5.2E-08 66.3 4.3 31 312-342 3-33 (208)
190 2jaq_A Deoxyguanosine kinase; 96.5 0.0013 4.3E-08 66.5 3.7 28 313-340 2-29 (205)
191 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0016 5.4E-08 69.5 4.7 32 312-343 5-39 (260)
192 2v54_A DTMP kinase, thymidylat 96.5 0.0011 3.9E-08 67.0 3.4 33 312-344 5-38 (204)
193 2z0h_A DTMP kinase, thymidylat 96.5 0.0026 8.9E-08 63.9 5.9 32 313-344 2-36 (197)
194 3uie_A Adenylyl-sulfate kinase 96.5 0.0017 5.9E-08 66.1 4.5 34 310-343 24-60 (200)
195 2plr_A DTMP kinase, probable t 96.4 0.0017 5.7E-08 66.0 4.1 27 312-338 5-31 (213)
196 2if2_A Dephospho-COA kinase; a 96.4 0.0012 4.3E-08 67.0 3.1 30 312-342 2-31 (204)
197 3e1s_A Exodeoxyribonuclease V, 96.4 0.001 3.4E-08 79.4 2.6 34 311-344 204-240 (574)
198 3bh0_A DNAB-like replicative h 96.4 0.014 4.7E-07 64.1 11.6 37 307-343 64-103 (315)
199 2xb4_A Adenylate kinase; ATP-b 96.4 0.0015 5.2E-08 67.9 3.6 30 313-342 2-31 (223)
200 3r20_A Cytidylate kinase; stru 96.4 0.0017 6E-08 68.4 3.9 31 311-341 9-39 (233)
201 3a8t_A Adenylate isopentenyltr 96.4 0.0013 4.4E-08 73.0 3.0 34 311-344 40-73 (339)
202 2bbw_A Adenylate kinase 4, AK4 96.4 0.002 6.9E-08 67.8 4.4 30 311-340 27-56 (246)
203 1kgd_A CASK, peripheral plasma 96.4 0.0021 7.2E-08 64.5 4.1 26 311-336 5-30 (180)
204 3jvv_A Twitching mobility prot 96.3 0.012 4E-07 66.0 10.5 24 312-335 124-147 (356)
205 1nn5_A Similar to deoxythymidy 96.3 0.0016 5.5E-08 66.4 3.2 26 311-336 9-34 (215)
206 1uf9_A TT1252 protein; P-loop, 96.3 0.002 6.7E-08 65.1 3.8 30 311-341 8-37 (203)
207 1jjv_A Dephospho-COA kinase; P 96.3 0.0017 5.8E-08 66.2 3.3 29 312-341 3-31 (206)
208 3nwj_A ATSK2; P loop, shikimat 96.3 0.0019 6.5E-08 68.8 3.8 32 311-342 48-79 (250)
209 3foz_A TRNA delta(2)-isopenten 96.3 0.0021 7.1E-08 70.5 4.0 35 310-344 9-43 (316)
210 2grj_A Dephospho-COA kinase; T 96.3 0.0019 6.6E-08 66.0 3.5 33 310-342 11-43 (192)
211 4gp7_A Metallophosphoesterase; 96.3 0.0041 1.4E-07 61.9 5.7 20 311-330 9-28 (171)
212 2ga8_A Hypothetical 39.9 kDa p 96.3 0.001 3.5E-08 74.3 1.3 36 312-347 25-60 (359)
213 1xx6_A Thymidine kinase; NESG, 96.2 0.015 5.3E-07 59.2 9.9 34 311-344 8-44 (191)
214 4e22_A Cytidylate kinase; P-lo 96.2 0.0026 8.9E-08 67.5 4.1 30 311-340 27-56 (252)
215 1w36_D RECD, exodeoxyribonucle 96.2 0.0046 1.6E-07 74.2 6.5 25 311-335 164-188 (608)
216 1q3t_A Cytidylate kinase; nucl 96.2 0.0029 1E-07 66.2 4.2 32 310-341 15-46 (236)
217 2qor_A Guanylate kinase; phosp 96.1 0.0028 9.7E-08 64.7 3.8 26 311-336 12-37 (204)
218 2yvu_A Probable adenylyl-sulfa 96.1 0.0038 1.3E-07 62.5 4.6 33 311-343 13-48 (186)
219 3tau_A Guanylate kinase, GMP k 96.1 0.0033 1.1E-07 64.6 3.9 26 311-336 8-33 (208)
220 1vht_A Dephospho-COA kinase; s 96.0 0.0032 1.1E-07 64.8 3.7 30 312-342 5-34 (218)
221 1uj2_A Uridine-cytidine kinase 96.0 0.0033 1.1E-07 66.5 3.9 29 311-339 22-50 (252)
222 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.034 1.2E-06 61.5 12.3 25 312-336 172-196 (330)
223 1ltq_A Polynucleotide kinase; 96.0 0.0025 8.4E-08 69.0 2.9 29 312-340 3-32 (301)
224 3exa_A TRNA delta(2)-isopenten 96.0 0.0029 9.8E-08 69.5 3.3 161 312-514 4-175 (322)
225 4a1f_A DNAB helicase, replicat 96.0 0.012 4.1E-07 65.4 8.3 38 307-344 42-82 (338)
226 2bdt_A BH3686; alpha-beta prot 96.0 0.0033 1.1E-07 63.1 3.5 26 312-337 3-28 (189)
227 2qt1_A Nicotinamide riboside k 96.0 0.0026 8.9E-08 64.9 2.6 33 311-343 21-54 (207)
228 3dm5_A SRP54, signal recogniti 96.0 0.021 7.2E-07 65.6 10.3 39 311-349 100-141 (443)
229 2j9r_A Thymidine kinase; TK1, 96.0 0.027 9.4E-07 58.4 10.2 74 311-384 28-114 (214)
230 2f6r_A COA synthase, bifunctio 95.9 0.0037 1.3E-07 67.6 3.7 32 310-342 74-105 (281)
231 3kl4_A SRP54, signal recogniti 95.9 0.019 6.5E-07 65.9 9.6 38 311-348 97-137 (433)
232 3d3q_A TRNA delta(2)-isopenten 95.9 0.0036 1.2E-07 69.5 3.5 31 312-342 8-38 (340)
233 1m7g_A Adenylylsulfate kinase; 95.9 0.0046 1.6E-07 63.5 3.9 33 311-343 25-61 (211)
234 1vma_A Cell division protein F 95.9 0.017 5.9E-07 63.2 8.7 35 311-345 104-141 (306)
235 2h92_A Cytidylate kinase; ross 95.9 0.0041 1.4E-07 63.9 3.6 31 312-342 4-34 (219)
236 2j41_A Guanylate kinase; GMP, 95.8 0.0045 1.5E-07 62.7 3.7 25 311-335 6-30 (207)
237 3f8t_A Predicted ATPase involv 95.8 0.0038 1.3E-07 72.0 3.3 84 313-403 241-329 (506)
238 3fdi_A Uncharacterized protein 95.8 0.0052 1.8E-07 63.1 4.0 30 312-341 7-36 (201)
239 3b6e_A Interferon-induced heli 95.8 0.007 2.4E-07 61.4 5.0 24 312-335 49-72 (216)
240 3tr0_A Guanylate kinase, GMP k 95.8 0.0054 1.9E-07 62.0 4.1 26 311-336 7-32 (205)
241 1q57_A DNA primase/helicase; d 95.8 0.034 1.2E-06 64.9 11.2 38 307-344 238-279 (503)
242 2px0_A Flagellar biosynthesis 95.7 0.027 9.2E-07 61.4 9.5 38 311-348 105-146 (296)
243 2orv_A Thymidine kinase; TP4A 95.7 0.025 8.6E-07 59.3 8.7 85 310-399 18-113 (234)
244 3bgw_A DNAB-like replicative h 95.6 0.046 1.6E-06 62.9 11.3 38 307-344 193-233 (444)
245 3a00_A Guanylate kinase, GMP k 95.6 0.0064 2.2E-07 61.1 3.6 25 312-336 2-26 (186)
246 1nrj_B SR-beta, signal recogni 95.5 0.025 8.6E-07 57.6 8.0 25 311-335 12-36 (218)
247 4eaq_A DTMP kinase, thymidylat 95.5 0.012 4E-07 61.7 5.5 33 310-342 25-59 (229)
248 1vt4_I APAF-1 related killer D 95.5 0.018 6.1E-07 72.3 7.8 47 311-357 150-202 (1221)
249 3ney_A 55 kDa erythrocyte memb 95.4 0.0089 3E-07 61.4 3.9 26 311-336 19-44 (197)
250 1rz3_A Hypothetical protein rb 95.4 0.01 3.5E-07 60.4 4.4 34 310-343 21-57 (201)
251 3asz_A Uridine kinase; cytidin 95.4 0.0068 2.3E-07 61.8 3.0 26 311-336 6-31 (211)
252 3eph_A TRNA isopentenyltransfe 95.4 0.0073 2.5E-07 68.5 3.5 30 312-341 3-32 (409)
253 1lvg_A Guanylate kinase, GMP k 95.3 0.0087 3E-07 61.0 3.5 25 311-335 4-28 (198)
254 3c8u_A Fructokinase; YP_612366 95.2 0.0097 3.3E-07 60.9 3.5 27 310-336 21-47 (208)
255 1gtv_A TMK, thymidylate kinase 95.1 0.0064 2.2E-07 61.9 1.9 25 312-336 1-25 (214)
256 3hdt_A Putative kinase; struct 95.1 0.011 3.7E-07 61.9 3.6 30 312-341 15-44 (223)
257 1tf7_A KAIC; homohexamer, hexa 95.0 0.064 2.2E-06 63.0 10.3 38 307-344 277-317 (525)
258 1s96_A Guanylate kinase, GMP k 95.0 0.014 4.8E-07 60.7 4.0 28 309-336 14-41 (219)
259 2jeo_A Uridine-cytidine kinase 95.0 0.014 4.8E-07 61.4 4.0 28 311-338 25-52 (245)
260 1znw_A Guanylate kinase, GMP k 94.9 0.016 5.4E-07 59.3 4.0 27 310-336 19-45 (207)
261 1z6g_A Guanylate kinase; struc 94.9 0.015 5E-07 60.3 3.7 26 310-335 22-47 (218)
262 2qmh_A HPR kinase/phosphorylas 94.8 0.011 3.6E-07 60.9 2.4 26 311-336 34-59 (205)
263 1x6v_B Bifunctional 3'-phospho 94.8 0.02 6.7E-07 68.6 5.0 34 310-343 51-87 (630)
264 3gmt_A Adenylate kinase; ssgci 94.8 0.016 5.6E-07 60.8 3.8 31 312-342 9-39 (230)
265 4edh_A DTMP kinase, thymidylat 94.7 0.025 8.6E-07 58.6 5.1 49 311-362 6-57 (213)
266 1a7j_A Phosphoribulokinase; tr 94.7 0.0066 2.3E-07 66.0 0.6 36 311-346 5-43 (290)
267 3v9p_A DTMP kinase, thymidylat 94.6 0.03 1E-06 58.7 5.4 34 311-344 25-65 (227)
268 3vkw_A Replicase large subunit 94.5 0.013 4.5E-07 67.2 2.4 26 308-333 158-183 (446)
269 1htw_A HI0065; nucleotide-bind 94.5 0.024 8.2E-07 55.9 4.0 26 310-335 32-57 (158)
270 2eyu_A Twitching motility prot 94.4 0.023 8E-07 60.7 4.0 26 310-335 24-49 (261)
271 3lxx_A GTPase IMAP family memb 94.4 0.18 6.1E-06 52.4 10.7 23 312-334 30-52 (239)
272 1np6_A Molybdopterin-guanine d 94.3 0.026 8.9E-07 56.6 4.0 34 310-343 5-41 (174)
273 3lnc_A Guanylate kinase, GMP k 94.3 0.014 4.7E-07 60.7 2.1 25 311-335 27-52 (231)
274 2oap_1 GSPE-2, type II secreti 94.3 0.026 8.8E-07 66.2 4.4 26 311-336 260-285 (511)
275 2axn_A 6-phosphofructo-2-kinas 94.2 0.017 5.7E-07 68.0 2.6 28 311-338 35-62 (520)
276 2ocp_A DGK, deoxyguanosine kin 94.2 0.024 8.3E-07 59.3 3.5 26 312-337 3-29 (241)
277 3e2i_A Thymidine kinase; Zn-bi 94.2 0.044 1.5E-06 56.9 5.4 85 311-398 28-125 (219)
278 2j37_W Signal recognition part 94.2 0.077 2.6E-06 62.0 8.0 39 311-349 101-142 (504)
279 1odf_A YGR205W, hypothetical 3 94.1 0.03 1E-06 60.8 4.3 27 310-336 30-56 (290)
280 1vec_A ATP-dependent RNA helic 94.1 0.18 6.3E-06 50.6 9.9 19 312-330 41-59 (206)
281 1xjc_A MOBB protein homolog; s 94.1 0.034 1.2E-06 55.6 4.3 33 312-344 5-40 (169)
282 3tmk_A Thymidylate kinase; pho 94.1 0.066 2.3E-06 55.6 6.6 50 311-362 5-54 (216)
283 3ice_A Transcription terminati 94.1 0.056 1.9E-06 60.9 6.4 25 311-335 174-198 (422)
284 1p5z_B DCK, deoxycytidine kina 94.0 0.012 4E-07 62.6 0.7 30 311-340 24-54 (263)
285 2v9p_A Replication protein E1; 94.0 0.031 1.1E-06 61.1 4.1 29 308-336 123-151 (305)
286 3t1o_A Gliding protein MGLA; G 94.0 0.05 1.7E-06 53.8 5.3 24 312-335 15-38 (198)
287 3tqc_A Pantothenate kinase; bi 93.8 0.039 1.3E-06 60.9 4.5 26 311-336 92-117 (321)
288 2pl3_A Probable ATP-dependent 93.8 0.14 4.8E-06 52.9 8.4 18 312-329 63-80 (236)
289 1rj9_A FTSY, signal recognitio 93.7 0.042 1.4E-06 60.1 4.5 25 311-335 102-126 (304)
290 3thx_B DNA mismatch repair pro 93.7 0.16 5.6E-06 63.4 10.2 25 309-333 671-695 (918)
291 3aez_A Pantothenate kinase; tr 93.7 0.038 1.3E-06 60.6 4.0 27 310-336 89-115 (312)
292 3lv8_A DTMP kinase, thymidylat 93.6 0.044 1.5E-06 57.7 4.3 29 310-338 26-57 (236)
293 1sq5_A Pantothenate kinase; P- 93.5 0.041 1.4E-06 60.1 4.0 26 311-336 80-105 (308)
294 3ld9_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 57.4 3.8 32 310-341 20-55 (223)
295 1dek_A Deoxynucleoside monopho 93.4 0.068 2.3E-06 56.5 5.4 44 312-362 2-45 (241)
296 2ewv_A Twitching motility prot 93.4 0.043 1.5E-06 61.7 4.0 26 310-335 135-160 (372)
297 2gxq_A Heat resistant RNA depe 93.4 0.17 5.7E-06 50.9 8.1 20 312-331 39-58 (207)
298 3tqf_A HPR(Ser) kinase; transf 93.4 0.044 1.5E-06 55.0 3.5 27 311-338 16-42 (181)
299 4tmk_A Protein (thymidylate ki 93.3 0.057 1.9E-06 56.0 4.4 48 312-362 4-55 (213)
300 3tif_A Uncharacterized ABC tra 93.3 0.04 1.4E-06 57.8 3.3 26 310-335 30-55 (235)
301 3e70_C DPA, signal recognition 93.2 0.052 1.8E-06 60.0 4.2 35 310-344 128-165 (328)
302 1sky_E F1-ATPase, F1-ATP synth 93.2 0.1 3.4E-06 60.3 6.6 24 312-335 152-175 (473)
303 3thx_A DNA mismatch repair pro 93.2 0.31 1.1E-05 61.1 11.5 23 310-332 661-683 (934)
304 3b9q_A Chloroplast SRP recepto 93.2 0.05 1.7E-06 59.4 3.9 36 311-347 100-138 (302)
305 2cbz_A Multidrug resistance-as 93.1 0.046 1.6E-06 57.5 3.3 26 310-335 30-55 (237)
306 4b3f_X DNA-binding protein smu 93.0 0.049 1.7E-06 65.7 3.9 33 312-344 206-241 (646)
307 1hv8_A Putative ATP-dependent 93.0 0.25 8.5E-06 53.8 9.3 33 312-344 45-82 (367)
308 2pcj_A ABC transporter, lipopr 93.0 0.04 1.4E-06 57.4 2.6 25 311-335 30-54 (224)
309 1zu4_A FTSY; GTPase, signal re 92.9 0.081 2.8E-06 58.2 5.1 35 311-345 105-142 (320)
310 1m8p_A Sulfate adenylyltransfe 92.8 0.051 1.8E-06 64.6 3.7 33 311-343 396-432 (573)
311 2v3c_C SRP54, signal recogniti 92.8 0.048 1.6E-06 62.6 3.3 37 311-347 99-138 (432)
312 1p9r_A General secretion pathw 92.8 0.062 2.1E-06 61.4 4.1 26 311-336 167-192 (418)
313 2onk_A Molybdate/tungstate ABC 92.8 0.059 2E-06 56.8 3.6 24 312-335 25-48 (240)
314 1b0u_A Histidine permease; ABC 92.8 0.053 1.8E-06 57.9 3.3 26 310-335 31-56 (262)
315 4f4c_A Multidrug resistance pr 92.7 0.11 3.6E-06 67.9 6.7 28 309-336 442-469 (1321)
316 3fe2_A Probable ATP-dependent 92.7 0.2 6.7E-06 52.2 7.6 19 312-330 67-85 (242)
317 1c9k_A COBU, adenosylcobinamid 92.7 0.048 1.6E-06 55.1 2.7 45 314-360 2-46 (180)
318 1bif_A 6-phosphofructo-2-kinas 92.7 0.047 1.6E-06 63.2 2.9 28 311-338 39-66 (469)
319 1g8f_A Sulfate adenylyltransfe 92.6 0.056 1.9E-06 63.3 3.5 26 312-337 396-421 (511)
320 3ber_A Probable ATP-dependent 92.6 0.25 8.4E-06 51.9 8.2 18 312-329 81-98 (249)
321 2f1r_A Molybdopterin-guanine d 92.6 0.045 1.6E-06 54.7 2.3 24 312-335 3-26 (171)
322 2zu0_C Probable ATP-dependent 92.6 0.067 2.3E-06 57.3 3.8 25 310-334 45-69 (267)
323 3dkp_A Probable ATP-dependent 92.6 0.24 8.2E-06 51.4 8.0 18 312-329 67-84 (245)
324 3kta_A Chromosome segregation 92.6 0.074 2.5E-06 52.6 3.9 26 312-337 27-52 (182)
325 2og2_A Putative signal recogni 92.6 0.068 2.3E-06 59.8 4.0 37 310-347 156-195 (359)
326 1mv5_A LMRA, multidrug resista 92.5 0.059 2E-06 56.8 3.1 26 310-335 27-52 (243)
327 3iuy_A Probable ATP-dependent 92.4 0.55 1.9E-05 48.0 10.5 19 312-330 58-76 (228)
328 4dhe_A Probable GTP-binding pr 92.4 0.73 2.5E-05 46.6 11.3 24 311-334 29-52 (223)
329 2olj_A Amino acid ABC transpor 92.4 0.062 2.1E-06 57.5 3.3 26 310-335 49-74 (263)
330 1g6h_A High-affinity branched- 92.4 0.054 1.9E-06 57.6 2.8 26 310-335 32-57 (257)
331 3fvq_A Fe(3+) IONS import ATP- 92.4 0.067 2.3E-06 59.8 3.6 26 310-335 29-54 (359)
332 3b85_A Phosphate starvation-in 92.4 0.051 1.7E-06 56.0 2.5 23 312-334 23-45 (208)
333 2d2e_A SUFC protein; ABC-ATPas 92.4 0.065 2.2E-06 56.8 3.3 24 311-334 29-52 (250)
334 2pze_A Cystic fibrosis transme 92.4 0.056 1.9E-06 56.5 2.8 26 310-335 33-58 (229)
335 2ghi_A Transport protein; mult 92.3 0.065 2.2E-06 57.1 3.3 25 310-334 45-69 (260)
336 1ji0_A ABC transporter; ATP bi 92.3 0.057 2E-06 56.8 2.8 25 311-335 32-56 (240)
337 2ixe_A Antigen peptide transpo 92.3 0.066 2.3E-06 57.5 3.3 26 310-335 44-69 (271)
338 3p32_A Probable GTPase RV1496/ 92.3 0.092 3.1E-06 58.5 4.5 34 311-344 79-115 (355)
339 1sgw_A Putative ABC transporte 92.2 0.054 1.9E-06 56.1 2.5 25 311-335 35-59 (214)
340 2gk6_A Regulator of nonsense t 92.2 0.087 3E-06 63.3 4.6 24 312-335 196-219 (624)
341 1qde_A EIF4A, translation init 92.2 0.29 9.8E-06 49.9 7.9 17 312-328 52-68 (224)
342 3gfo_A Cobalt import ATP-bindi 92.2 0.06 2E-06 58.0 2.8 26 310-335 33-58 (275)
343 2ff7_A Alpha-hemolysin translo 92.1 0.062 2.1E-06 56.9 2.8 26 310-335 34-59 (247)
344 3ly5_A ATP-dependent RNA helic 92.1 0.14 4.7E-06 54.3 5.5 20 312-331 92-111 (262)
345 2it1_A 362AA long hypothetical 92.1 0.081 2.8E-06 59.3 3.8 25 310-334 28-52 (362)
346 2yz2_A Putative ABC transporte 92.1 0.073 2.5E-06 56.9 3.3 26 310-335 32-57 (266)
347 1vpl_A ABC transporter, ATP-bi 92.0 0.073 2.5E-06 56.7 3.3 26 310-335 40-65 (256)
348 2yyz_A Sugar ABC transporter, 92.0 0.082 2.8E-06 59.1 3.8 25 310-334 28-52 (359)
349 3rlf_A Maltose/maltodextrin im 92.0 0.082 2.8E-06 59.6 3.8 26 310-335 28-53 (381)
350 2gza_A Type IV secretion syste 92.0 0.063 2.2E-06 60.0 2.8 26 311-336 175-200 (361)
351 4hlc_A DTMP kinase, thymidylat 92.0 0.16 5.4E-06 52.2 5.6 32 312-343 3-36 (205)
352 3lxw_A GTPase IMAP family memb 92.0 0.28 9.7E-06 51.5 7.7 23 312-334 22-44 (247)
353 2vp4_A Deoxynucleoside kinase; 91.9 0.076 2.6E-06 55.2 3.2 31 310-341 19-49 (230)
354 1yrb_A ATP(GTP)binding protein 91.9 0.11 3.8E-06 54.4 4.5 34 311-344 14-49 (262)
355 2yhs_A FTSY, cell division pro 91.9 0.09 3.1E-06 61.1 4.0 37 310-347 292-331 (503)
356 4g1u_C Hemin import ATP-bindin 91.9 0.067 2.3E-06 57.3 2.8 26 310-335 36-61 (266)
357 2qi9_C Vitamin B12 import ATP- 91.9 0.068 2.3E-06 56.7 2.8 25 311-335 26-50 (249)
358 4i1u_A Dephospho-COA kinase; s 91.9 0.087 3E-06 54.5 3.5 32 312-344 10-41 (210)
359 1v43_A Sugar-binding transport 91.9 0.088 3E-06 59.2 3.8 25 310-334 36-60 (372)
360 1j8m_F SRP54, signal recogniti 91.9 0.098 3.4E-06 56.9 4.1 39 311-349 98-139 (297)
361 1lw7_A Transcriptional regulat 91.8 0.089 3E-06 58.7 3.8 27 311-337 170-196 (365)
362 3d31_A Sulfate/molybdate ABC t 91.8 0.075 2.6E-06 59.2 3.1 25 310-334 25-49 (348)
363 1z47_A CYSA, putative ABC-tran 91.8 0.08 2.7E-06 59.2 3.3 24 311-334 41-64 (355)
364 2ihy_A ABC transporter, ATP-bi 91.8 0.07 2.4E-06 57.5 2.8 25 311-335 47-71 (279)
365 2nq2_C Hypothetical ABC transp 91.7 0.073 2.5E-06 56.6 2.8 25 311-335 31-55 (253)
366 2xau_A PRE-mRNA-splicing facto 91.7 0.31 1.1E-05 60.0 8.7 23 312-334 110-132 (773)
367 3bor_A Human initiation factor 91.6 0.26 8.7E-06 51.1 6.8 21 312-332 68-88 (237)
368 3cr8_A Sulfate adenylyltranfer 91.6 0.076 2.6E-06 62.8 3.0 27 310-336 368-394 (552)
369 1g29_1 MALK, maltose transport 91.5 0.089 3E-06 59.2 3.3 24 311-334 29-52 (372)
370 1oxx_K GLCV, glucose, ABC tran 91.5 0.073 2.5E-06 59.4 2.6 25 310-334 30-54 (353)
371 2f9l_A RAB11B, member RAS onco 91.3 0.1 3.6E-06 52.3 3.3 23 312-334 6-28 (199)
372 2fwr_A DNA repair protein RAD2 91.3 0.38 1.3E-05 55.1 8.5 34 312-345 109-142 (472)
373 2pjz_A Hypothetical protein ST 91.2 0.099 3.4E-06 55.9 3.2 25 311-335 30-54 (263)
374 3gd7_A Fusion complex of cysti 91.2 0.11 3.7E-06 58.8 3.6 24 310-333 46-69 (390)
375 2bbs_A Cystic fibrosis transme 91.1 0.1 3.4E-06 56.7 3.1 26 310-335 63-88 (290)
376 1oix_A RAS-related protein RAB 91.1 0.11 3.6E-06 52.0 3.1 24 312-335 30-53 (191)
377 2xxa_A Signal recognition part 91.1 0.17 5.8E-06 58.0 5.1 40 311-350 100-143 (433)
378 1ls1_A Signal recognition part 91.0 0.18 6E-06 54.8 5.0 35 311-345 98-135 (295)
379 3sop_A Neuronal-specific septi 90.9 0.12 4.1E-06 55.4 3.5 23 313-335 4-26 (270)
380 3ch4_B Pmkase, phosphomevalona 90.6 0.18 6E-06 51.8 4.3 29 310-338 10-38 (202)
381 2wsm_A Hydrogenase expression/ 90.6 0.15 5.2E-06 51.8 3.8 25 312-336 31-55 (221)
382 2dyk_A GTP-binding protein; GT 90.5 0.14 4.8E-06 48.7 3.3 22 313-334 3-24 (161)
383 3nh6_A ATP-binding cassette SU 90.2 0.11 3.9E-06 56.7 2.6 26 310-335 79-104 (306)
384 2wjy_A Regulator of nonsense t 90.2 0.15 5.1E-06 63.0 3.9 24 312-335 372-395 (800)
385 2zej_A Dardarin, leucine-rich 90.2 0.12 4.2E-06 51.1 2.6 21 313-333 4-24 (184)
386 2obl_A ESCN; ATPase, hydrolase 90.1 0.19 6.6E-06 55.9 4.4 33 311-343 71-103 (347)
387 1z2a_A RAS-related protein RAB 90.1 0.16 5.6E-06 48.5 3.4 23 312-334 6-28 (168)
388 2qm8_A GTPase/ATPase; G protei 90.1 0.18 6.1E-06 55.8 4.1 25 311-335 55-79 (337)
389 2ged_A SR-beta, signal recogni 90.1 0.2 6.7E-06 49.6 4.0 24 311-334 48-71 (193)
390 2gks_A Bifunctional SAT/APS ki 90.0 0.14 4.8E-06 60.5 3.3 33 311-343 372-407 (546)
391 3tui_C Methionine import ATP-b 90.0 0.17 5.8E-06 56.7 3.8 26 310-335 53-78 (366)
392 2wji_A Ferrous iron transport 90.0 0.16 5.3E-06 49.3 3.1 22 312-333 4-25 (165)
393 1tf7_A KAIC; homohexamer, hexa 90.0 0.13 4.3E-06 60.5 2.9 24 308-331 36-59 (525)
394 2dpy_A FLII, flagellum-specifi 89.9 0.19 6.6E-06 57.7 4.3 35 310-344 156-190 (438)
395 2ce2_X GTPase HRAS; signaling 89.9 0.16 5.5E-06 48.1 3.1 22 313-334 5-26 (166)
396 2va8_A SSO2462, SKI2-type heli 89.9 0.5 1.7E-05 57.4 8.2 21 311-331 46-66 (715)
397 1kao_A RAP2A; GTP-binding prot 89.9 0.17 5.9E-06 48.1 3.3 22 313-334 5-26 (167)
398 1f2t_A RAD50 ABC-ATPase; DNA d 89.8 0.18 6.2E-06 48.9 3.4 24 312-335 24-47 (149)
399 2xzl_A ATP-dependent helicase 89.8 0.18 6.2E-06 62.3 4.2 45 312-357 376-424 (802)
400 4a2p_A RIG-I, retinoic acid in 89.8 0.69 2.4E-05 53.6 9.0 24 312-335 23-46 (556)
401 3tbk_A RIG-I helicase domain; 89.7 0.61 2.1E-05 53.9 8.4 33 312-344 20-60 (555)
402 2ffh_A Protein (FFH); SRP54, s 89.7 0.25 8.7E-06 56.4 5.0 39 311-350 98-139 (425)
403 2nzj_A GTP-binding protein REM 89.6 0.17 5.9E-06 48.8 3.1 22 313-334 6-27 (175)
404 2zj8_A DNA helicase, putative 89.6 0.48 1.6E-05 57.6 7.7 18 312-329 40-57 (720)
405 1ek0_A Protein (GTP-binding pr 89.6 0.19 6.4E-06 48.1 3.3 22 313-334 5-26 (170)
406 3ug7_A Arsenical pump-driving 89.5 0.26 8.8E-06 54.8 4.8 37 308-344 23-62 (349)
407 3l0o_A Transcription terminati 89.5 0.37 1.3E-05 54.2 6.0 24 312-335 176-199 (427)
408 1u8z_A RAS-related protein RAL 89.4 0.2 6.7E-06 47.7 3.3 23 312-334 5-27 (168)
409 1z0j_A RAB-22, RAS-related pro 89.3 0.2 6.8E-06 48.0 3.3 22 313-334 8-29 (170)
410 2wjg_A FEOB, ferrous iron tran 89.3 0.19 6.5E-06 49.4 3.1 23 312-334 8-30 (188)
411 2npi_A Protein CLP1; CLP1-PCF1 89.3 0.18 6.3E-06 58.2 3.4 25 311-335 138-162 (460)
412 1wms_A RAB-9, RAB9, RAS-relate 89.2 0.2 6.9E-06 48.5 3.3 23 312-334 8-30 (177)
413 3fmp_B ATP-dependent RNA helic 89.2 0.56 1.9E-05 53.8 7.5 18 312-329 132-149 (479)
414 1ky3_A GTP-binding protein YPT 89.2 0.2 7E-06 48.5 3.3 23 312-334 9-31 (182)
415 3bc1_A RAS-related protein RAB 89.1 0.21 7E-06 49.0 3.3 23 312-334 12-34 (195)
416 2lkc_A Translation initiation 89.1 0.25 8.4E-06 47.9 3.8 24 311-334 8-31 (178)
417 1g16_A RAS-related protein SEC 89.1 0.2 6.9E-06 47.9 3.1 22 313-334 5-26 (170)
418 2hf9_A Probable hydrogenase ni 89.0 0.24 8.2E-06 50.5 3.8 24 312-335 39-62 (226)
419 3q85_A GTP-binding protein REM 89.0 0.2 7E-06 48.0 3.1 21 313-333 4-24 (169)
420 1c1y_A RAS-related protein RAP 89.0 0.22 7.4E-06 47.5 3.3 22 313-334 5-26 (167)
421 1z08_A RAS-related protein RAB 89.0 0.22 7.4E-06 47.8 3.3 23 312-334 7-29 (170)
422 4dzz_A Plasmid partitioning pr 89.0 0.48 1.6E-05 47.4 6.0 34 313-346 3-40 (206)
423 2rcn_A Probable GTPase ENGC; Y 89.0 0.22 7.4E-06 55.7 3.6 25 312-336 216-240 (358)
424 2erx_A GTP-binding protein DI- 88.9 0.21 7.1E-06 47.9 3.1 21 313-333 5-25 (172)
425 1r2q_A RAS-related protein RAB 88.9 0.23 7.7E-06 47.5 3.3 23 312-334 7-29 (170)
426 1pui_A ENGB, probable GTP-bind 88.9 0.11 3.8E-06 52.2 1.2 23 311-333 26-48 (210)
427 2yv5_A YJEQ protein; hydrolase 88.8 0.22 7.6E-06 54.1 3.5 26 311-337 165-190 (302)
428 1r8s_A ADP-ribosylation factor 88.8 0.24 8.3E-06 47.2 3.5 21 314-334 3-23 (164)
429 2p6r_A Afuhel308 helicase; pro 88.7 0.5 1.7E-05 57.3 7.0 19 312-330 41-59 (702)
430 3pey_A ATP-dependent RNA helic 88.6 0.38 1.3E-05 52.9 5.4 22 312-333 45-66 (395)
431 3llm_A ATP-dependent RNA helic 88.6 0.26 9E-06 51.1 3.8 21 312-332 77-97 (235)
432 2p67_A LAO/AO transport system 88.6 0.27 9.4E-06 54.3 4.2 32 311-342 56-90 (341)
433 1upt_A ARL1, ADP-ribosylation 88.5 0.25 8.4E-06 47.4 3.3 23 312-334 8-30 (171)
434 3q72_A GTP-binding protein RAD 88.5 0.21 7.2E-06 47.8 2.8 21 313-333 4-24 (166)
435 3pqc_A Probable GTP-binding pr 88.5 0.33 1.1E-05 47.7 4.3 24 311-334 23-46 (195)
436 2hxs_A RAB-26, RAS-related pro 88.5 0.22 7.4E-06 48.3 2.9 23 312-334 7-29 (178)
437 1wp9_A ATP-dependent RNA helic 88.4 1.4 4.8E-05 49.3 10.0 32 313-344 25-60 (494)
438 1z0f_A RAB14, member RAS oncog 88.4 0.25 8.5E-06 47.7 3.3 23 312-334 16-38 (179)
439 3clv_A RAB5 protein, putative; 88.4 0.24 8.3E-06 48.7 3.3 23 312-334 8-30 (208)
440 2y8e_A RAB-protein 6, GH09086P 88.3 0.24 8.2E-06 47.8 3.1 22 313-334 16-37 (179)
441 2j0s_A ATP-dependent RNA helic 88.3 1 3.6E-05 50.0 8.8 22 312-333 75-96 (410)
442 2www_A Methylmalonic aciduria 88.3 0.3 1E-05 54.2 4.3 25 311-335 74-98 (349)
443 4dsu_A GTPase KRAS, isoform 2B 88.3 0.25 8.6E-06 48.2 3.3 22 313-334 6-27 (189)
444 1svi_A GTP-binding protein YSX 88.3 0.33 1.1E-05 47.9 4.2 24 311-334 23-46 (195)
445 2fn4_A P23, RAS-related protei 88.3 0.24 8.3E-06 47.9 3.1 23 312-334 10-32 (181)
446 1knx_A Probable HPR(Ser) kinas 88.2 0.22 7.5E-06 54.5 3.0 26 312-338 148-173 (312)
447 1m7b_A RND3/RHOE small GTP-bin 88.2 0.24 8.3E-06 48.7 3.1 23 312-334 8-30 (184)
448 3con_A GTPase NRAS; structural 88.2 0.26 8.9E-06 48.5 3.3 23 312-334 22-44 (190)
449 1ko7_A HPR kinase/phosphatase; 88.2 0.24 8.3E-06 54.3 3.3 26 312-338 145-170 (314)
450 2oil_A CATX-8, RAS-related pro 88.2 0.26 8.9E-06 48.7 3.3 23 312-334 26-48 (193)
451 1u0l_A Probable GTPase ENGC; p 88.1 0.22 7.4E-06 54.1 2.9 25 311-335 169-193 (301)
452 2efe_B Small GTP-binding prote 88.1 0.27 9.1E-06 47.8 3.3 23 312-334 13-35 (181)
453 2a9k_A RAS-related protein RAL 88.1 0.27 9.2E-06 47.9 3.3 23 312-334 19-41 (187)
454 3tw8_B RAS-related protein RAB 88.1 0.24 8.3E-06 47.9 2.9 22 312-333 10-31 (181)
455 2bme_A RAB4A, RAS-related prot 88.0 0.26 8.8E-06 48.2 3.1 23 312-334 11-33 (186)
456 3eiq_A Eukaryotic initiation f 88.0 0.85 2.9E-05 50.6 7.8 21 312-332 78-98 (414)
457 2gj8_A MNME, tRNA modification 87.8 0.28 9.5E-06 48.0 3.2 23 312-334 5-27 (172)
458 3zq6_A Putative arsenical pump 87.7 0.39 1.3E-05 52.6 4.7 35 311-345 14-51 (324)
459 1nij_A Hypothetical protein YJ 87.7 0.21 7.2E-06 54.7 2.5 24 312-335 5-28 (318)
460 3h1t_A Type I site-specific re 87.7 0.25 8.5E-06 58.6 3.3 24 312-335 199-222 (590)
461 4dkx_A RAS-related protein RAB 87.7 0.85 2.9E-05 46.9 7.0 21 314-334 16-36 (216)
462 1mh1_A RAC1; GTP-binding, GTPa 87.7 0.29 1E-05 47.6 3.3 23 312-334 6-28 (186)
463 2cxx_A Probable GTP-binding pr 87.7 0.25 8.7E-06 48.3 2.9 22 313-334 3-24 (190)
464 3kkq_A RAS-related protein M-R 87.6 0.3 1E-05 47.7 3.3 23 312-334 19-41 (183)
465 3i5x_A ATP-dependent RNA helic 87.6 1.4 4.7E-05 51.6 9.6 19 311-329 111-129 (563)
466 2g6b_A RAS-related protein RAB 87.5 0.31 1E-05 47.3 3.3 23 312-334 11-33 (180)
467 3tkl_A RAS-related protein RAB 87.3 0.31 1.1E-05 48.0 3.3 23 312-334 17-39 (196)
468 2gf9_A RAS-related protein RAB 87.3 0.32 1.1E-05 48.0 3.3 23 312-334 23-45 (189)
469 1m2o_B GTP-binding protein SAR 87.3 0.3 1E-05 48.6 3.1 23 312-334 24-46 (190)
470 3ihw_A Centg3; RAS, centaurin, 87.2 0.32 1.1E-05 48.2 3.3 23 312-334 21-43 (184)
471 3bwd_D RAC-like GTP-binding pr 87.2 0.33 1.1E-05 47.2 3.3 23 312-334 9-31 (182)
472 3hjn_A DTMP kinase, thymidylat 87.1 0.41 1.4E-05 48.7 4.1 33 313-345 2-37 (197)
473 2r9v_A ATP synthase subunit al 87.1 0.56 1.9E-05 54.5 5.6 29 312-340 176-205 (515)
474 1x3s_A RAS-related protein RAB 87.1 0.33 1.1E-05 47.8 3.3 23 312-334 16-38 (195)
475 2qag_B Septin-6, protein NEDD5 87.1 0.27 9.3E-06 56.2 3.0 24 311-334 40-65 (427)
476 1zd9_A ADP-ribosylation factor 87.1 0.33 1.1E-05 48.0 3.3 23 312-334 23-45 (188)
477 3dz8_A RAS-related protein RAB 87.1 0.33 1.1E-05 48.1 3.3 24 312-335 24-47 (191)
478 2dy1_A Elongation factor G; tr 87.1 1.2 4.2E-05 53.7 8.9 26 311-336 9-34 (665)
479 3rc3_A ATP-dependent RNA helic 87.0 0.35 1.2E-05 58.5 4.1 22 311-332 155-176 (677)
480 2bov_A RAla, RAS-related prote 87.0 0.34 1.2E-05 48.2 3.3 23 312-334 15-37 (206)
481 4ag6_A VIRB4 ATPase, type IV s 86.9 0.47 1.6E-05 53.2 4.9 25 311-335 35-59 (392)
482 3qks_A DNA double-strand break 86.9 0.35 1.2E-05 49.3 3.4 26 312-337 24-49 (203)
483 3t5g_A GTP-binding protein RHE 86.9 0.33 1.1E-05 47.3 3.1 23 312-334 7-29 (181)
484 3c5c_A RAS-like protein 12; GD 86.8 0.35 1.2E-05 47.9 3.3 23 312-334 22-44 (187)
485 2a5j_A RAS-related protein RAB 86.8 0.35 1.2E-05 47.8 3.3 23 312-334 22-44 (191)
486 2iwr_A Centaurin gamma 1; ANK 86.7 0.29 9.8E-06 47.6 2.6 23 312-334 8-30 (178)
487 2atv_A RERG, RAS-like estrogen 86.7 0.35 1.2E-05 48.0 3.3 23 312-334 29-51 (196)
488 3reg_A RHO-like small GTPase; 86.7 0.36 1.2E-05 47.9 3.3 23 312-334 24-46 (194)
489 1vg8_A RAS-related protein RAB 86.7 0.35 1.2E-05 48.2 3.3 23 312-334 9-31 (207)
490 1zbd_A Rabphilin-3A; G protein 86.7 0.34 1.2E-05 48.3 3.1 23 312-334 9-31 (203)
491 3o8b_A HCV NS3 protease/helica 86.6 0.46 1.6E-05 57.3 4.8 35 311-345 232-266 (666)
492 2p5s_A RAS and EF-hand domain 86.5 0.37 1.3E-05 48.1 3.3 23 312-334 29-51 (199)
493 2fg5_A RAB-22B, RAS-related pr 86.5 0.35 1.2E-05 48.0 3.1 23 312-334 24-46 (192)
494 3iqw_A Tail-anchored protein t 86.5 0.53 1.8E-05 52.0 4.8 36 310-345 15-53 (334)
495 3cph_A RAS-related protein SEC 86.4 0.37 1.3E-05 48.2 3.3 23 312-334 21-43 (213)
496 2qe7_A ATP synthase subunit al 86.4 0.64 2.2E-05 53.9 5.6 29 312-340 163-192 (502)
497 1z06_A RAS-related protein RAB 86.3 0.38 1.3E-05 47.4 3.3 23 312-334 21-43 (189)
498 3euj_A Chromosome partition pr 86.3 0.37 1.3E-05 55.9 3.6 24 312-335 30-53 (483)
499 2woo_A ATPase GET3; tail-ancho 86.3 0.54 1.9E-05 51.6 4.8 36 310-345 18-56 (329)
500 2bcg_Y Protein YP2, GTP-bindin 86.3 0.36 1.2E-05 48.3 3.1 23 312-334 9-31 (206)
No 1
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=3.4e-49 Score=467.24 Aligned_cols=432 Identities=20% Similarity=0.325 Sum_probs=334.4
Q ss_pred cccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCC
Q 002241 193 VVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGN 272 (948)
Q Consensus 193 ~~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~ 272 (948)
...++||+|||+|++|.||+|++...+.|..||+.|.... . ..|.+ .|
T Consensus 23 ~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~------~-----------------------~~~~~--~g- 70 (516)
T 1sxj_A 23 MASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSK------K-----------------------NSFKH--AG- 70 (516)
T ss_dssp ---CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHH------H-----------------------TTTCC--CC-
T ss_pred CccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhc------h-----------------------hhccc--cC-
Confidence 4467899999999999999999999999999999987420 0 00000 00
Q ss_pred CCCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHH
Q 002241 273 RWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSST 352 (948)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~ 352 (948)
..+.+..+.+||+|||||||||+|+++|+++|+.++++|+++.++...
T Consensus 71 --------------------------------~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 71 --------------------------------KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp --------------------------------TTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred --------------------------------ccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 012234579999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHhhhccc-----------ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhh
Q 002241 353 IENKILDVVQMNSVM-----------ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKIS 421 (948)
Q Consensus 353 ~~~~I~~~~~~~sv~-----------~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~ 421 (948)
+...+..+.....+. ...++.||||||||.+.....+++..|+.++..
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--------------------- 177 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--------------------- 177 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh---------------------
Confidence 665554433322211 135789999999999987767777778777752
Q ss_pred hccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHH
Q 002241 422 KKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSC 501 (948)
Q Consensus 422 ~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~a 501 (948)
...|||||||+...+.+++++++|..+.|.+|+.+++.++|..+|.++++.++++++..|++.++||+|.+
T Consensus 178 ---------~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~ 248 (516)
T 1sxj_A 178 ---------TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQV 248 (516)
T ss_dssp ---------CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHH
T ss_pred ---------cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Confidence 24789999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccccccccce-eccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHH
Q 002241 502 LNTLQFLDKKKEILNVMDIGSQV-VGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVI 580 (948)
Q Consensus 502 In~LQ~~~~~~~~~~~~~i~~~~-vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i 580 (948)
+|.|++++.....++.+.+.... ...+|...++|+++++||+.+....... ....++..++++ ..+++.+
T Consensus 249 i~~L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~ 319 (516)
T 1sxj_A 249 INLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGS-------RNFTLNDKIALY--FDDFDFT 319 (516)
T ss_dssp HHHHTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGGGTSTTGG-------GTSCHHHHHHHH--TTSTTTH
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCCccccccc-------cCCCHHHhhhhh--ccCHHHH
Confidence 99999998877666655544221 1247888899999999998764321110 112344444443 5689999
Q ss_pred HHHHHHHhhhhccC-----ChhHHHHHHHHHHhhhhhHHhHHHHh-cCCccccccchhHHHHH-HHHhhccCCCCCCCCh
Q 002241 581 FDGIHENILQLQYH-----DPVMLKTVKCLDCLGNSDLMHQYIMR-TQQMPLYVYQPPLAITV-HRLVSQIQKPNLEWPK 653 (948)
Q Consensus 581 ~~~l~eNyl~~~~~-----D~~l~~~~~a~d~Ls~~D~l~~~i~~-~Q~~~L~~Y~~~~~~a~-h~lfa~~~~~~i~~P~ 653 (948)
..||+|||+..... +..++.++.|+||||++|++.++|++ .|+|+|++|..+++... +..+++....++.||.
T Consensus 320 ~~~i~eNy~~~~p~~~~~~~~~l~~~~~a~d~ls~~D~~~~~i~~~~q~~~l~~~~~~~~~v~p~~~~~g~~~~~~~fp~ 399 (516)
T 1sxj_A 320 PLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMAGRINFTA 399 (516)
T ss_dssp HHHHHHHSSSSEESCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCSSCGGGHHHHHHHHTHHHHHTTCEECSSCCCCCS
T ss_pred HHHHHHHhhhccccccCCchhHHHHHHHHHHHHhHHHHHHHHHccCCCCcccchhhHhhhhhccHHHhCCCCCCCCcCCH
Confidence 99999999865421 34789999999999999999999999 89999999998876433 2333444346799999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCchhhhhccCcchhHHHhHhhhhhhhCCCCcchhhhhcCCHHHHHHHHHHHHHHhhcC
Q 002241 654 SYQRYRNAFMEKMDIFKSWHSKIPPYISRHLSTESLVEDSISPLLHILSPPTLRPVALHLLSAKEKNDLAQLVSAMVSYS 733 (948)
Q Consensus 654 ~~~~~~~~~~~~~~~l~s~~~~i~~~~~~~~s~~~l~~d~lp~ll~ilsp~~lrpv~~~~~~~~Ek~~l~~lv~~M~~~~ 733 (948)
|+.++.. ..+++.++++++..+.. ..+.+...+.+|++|+|..+|+.| +...+++.+..+|++|.+|+
T Consensus 400 ~~~~~s~-~~k~~r~~~~l~~~~~~--~~~~~~~~~~~~~lp~l~~~~~~~---------l~~~~~~~~~~~i~~~~~y~ 467 (516)
T 1sxj_A 400 WLGQNSK-SAKYYRLLQEIHYHTRL--GTSTXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXX 467 (516)
T ss_dssp HHHHHHH-HHHHHHHHHHHHTTTTT--CCCHHHHHTTTHHHHHHHHSCCCC---------HHHHHHTTTCCSHHHHHHHH
T ss_pred HHhhhch-hhHHHHHHHHHHHHhhh--hhcccccccccccccccccccccc---------cccccccccccccccccccc
Confidence 9988765 45678888998887753 345677889999999999988754 22457788999999999999
Q ss_pred ceEEee
Q 002241 734 LTYKNT 739 (948)
Q Consensus 734 L~~~~~ 739 (948)
||.+.-
T Consensus 468 l~~~d~ 473 (516)
T 1sxj_A 468 XXXXXX 473 (516)
T ss_dssp HHC---
T ss_pred cccccc
Confidence 999753
No 2
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.95 E-value=2.6e-27 Score=262.76 Aligned_cols=284 Identities=19% Similarity=0.272 Sum_probs=209.7
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
....+|++||||++|+|++|++...+.|..|++...
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~-------------------------------------------- 46 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGK-------------------------------------------- 46 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTC--------------------------------------------
T ss_pred cccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCC--------------------------------------------
Confidence 457899999999999999999999999999988310
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHH
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTI 353 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~ 353 (948)
.++++|++||||||||++|+++|++++.+++++|+++.+ ...+
T Consensus 47 ------------------------------------~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i 89 (324)
T 3u61_B 47 ------------------------------------IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFV 89 (324)
T ss_dssp ------------------------------------CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHH
T ss_pred ------------------------------------CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHH
Confidence 125789999999999999999999999999999998866 5666
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCC
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLR 433 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~r 433 (948)
...+..+...... .+.+.||||||+|.+.+ ....+.|+.+++... ...
T Consensus 90 ~~~~~~~~~~~~~--~~~~~vliiDEi~~l~~--~~~~~~L~~~le~~~----------------------------~~~ 137 (324)
T 3u61_B 90 RGPLTNFASAASF--DGRQKVIVIDEFDRSGL--AESQRHLRSFMEAYS----------------------------SNC 137 (324)
T ss_dssp HTHHHHHHHBCCC--SSCEEEEEEESCCCGGG--HHHHHHHHHHHHHHG----------------------------GGC
T ss_pred HHHHHHHHhhccc--CCCCeEEEEECCcccCc--HHHHHHHHHHHHhCC----------------------------CCc
Confidence 6666666554332 34789999999999852 356777888776421 136
Q ss_pred cEEEEecCCCchhhhhhccceEEEEecCcCHHH-------HHHHHHHHhhhcCCCCCH-HHHHHHHHHccCCHHHHHHHH
Q 002241 434 PVICICNDLYAPALRSLRQIAKVHVFIQPSVSR-------VVSRLKHICNNESMKTSS-IALTTLAEYTECDIRSCLNTL 505 (948)
Q Consensus 434 PII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~-------l~~~L~~I~~~Egi~id~-~~L~~L~e~s~GDIR~aIn~L 505 (948)
.+|++||.... ....++++|.++.|.+|+.++ +..++..+|..+++.+++ +++..|++.++||+|.++|.|
T Consensus 138 ~iI~~~n~~~~-l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 138 SIIITANNIDG-IIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp EEEEEESSGGG-SCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHH
T ss_pred EEEEEeCCccc-cCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 79999998652 345577788999999999665 677788889999999998 999999999999999999999
Q ss_pred HHHHhcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHH
Q 002241 506 QFLDKKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIH 585 (948)
Q Consensus 506 Q~~~~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~ 585 (948)
+.++ ....++.+.+... ++. ...+++++..+.... .......+..++. ++..++.+++
T Consensus 217 ~~~~-~~~~i~~~~v~~~-~~~---~~~i~~~~~~~~~~~--------------~~~a~~~~~~l~~---~~~~i~~~l~ 274 (324)
T 3u61_B 217 DSYS-SKGVLDAGILSLV-TND---RGAIDDVLESLKNKD--------------VKQLRALAPKYAA---DYSWFVGKLA 274 (324)
T ss_dssp HHHG-GGTCBCC----------------CHHHHHHHHTTC--------------HHHHHHHHHHHSS---CHHHHHHHHH
T ss_pred HHHh-ccCCCCHHHHHHH-hCC---HHHHHHHHHHHHcCC--------------HHHHHHHHHHhcc---CHHHHHHHHH
Confidence 9998 4444555444422 221 224566665553321 1223344444443 8899999999
Q ss_pred HHhhhhccCChhHHHHHHHHHHhhhhhHHhHH
Q 002241 586 ENILQLQYHDPVMLKTVKCLDCLGNSDLMHQY 617 (948)
Q Consensus 586 eNyl~~~~~D~~l~~~~~a~d~Ls~~D~l~~~ 617 (948)
+++.. .|.+ .....++++|+..|.....
T Consensus 275 ~~~~~-~~~~---~~l~~i~~~l~~~d~~l~~ 302 (324)
T 3u61_B 275 EEIYS-RVTP---QSIIRMYEIVGENNQYHGI 302 (324)
T ss_dssp HHHHH-HSCH---HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHH-hCCH---HHHHHHHHHHHHHHHHHHh
Confidence 99876 4543 4567899999998876554
No 3
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.93 E-value=2.9e-25 Score=248.76 Aligned_cols=252 Identities=19% Similarity=0.264 Sum_probs=177.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-C----------------------------CCcceecCCCCCChH--HHHHHHHHHHh
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHC-G----------------------------YHVVEVNASDDRSSS--TIENKILDVVQ 362 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkel-G----------------------------~~viEiNaSd~rs~~--~~~~~I~~~~~ 362 (948)
++|+||+|+||||+++++|+++ + ..++++++++..... .+++.+..+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 9999999999999999999964 2 134677776644322 35555555443
Q ss_pred hhccc------c-cCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcE
Q 002241 363 MNSVM------A-DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPV 435 (948)
Q Consensus 363 ~~sv~------~-~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPI 435 (948)
...+. + ..++.||||||++.+. ....+.|+++++... ....+
T Consensus 119 ~~~~~~~~~ls~l~~~~~vlilDE~~~L~---~~~~~~L~~~le~~~----------------------------~~~~~ 167 (354)
T 1sxj_E 119 MEQVDFQDSKDGLAHRYKCVIINEANSLT---KDAQAALRRTMEKYS----------------------------KNIRL 167 (354)
T ss_dssp TTC------------CCEEEEEECTTSSC---HHHHHHHHHHHHHST----------------------------TTEEE
T ss_pred hccccccccccccCCCCeEEEEeCccccC---HHHHHHHHHHHHhhc----------------------------CCCEE
Confidence 32221 1 3478999999999963 466788888886421 12569
Q ss_pred EEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHccCCHHHHHHHHHHHHhcCc-
Q 002241 436 ICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTS-SIALTTLAEYTECDIRSCLNTLQFLDKKKE- 513 (948)
Q Consensus 436 I~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id-~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~- 513 (948)
|++||+... .+.+++++|..+.|.+|+.+++..+|..+|.++|+.++ ++++..|++.++||+|.+++.||.++....
T Consensus 168 Il~t~~~~~-l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~~~ 246 (354)
T 1sxj_E 168 IMVCDSMSP-IIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNEL 246 (354)
T ss_dssp EEEESCSCS-SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTTTT
T ss_pred EEEeCCHHH-HHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999998764 45668889999999999999999999999999999999 999999999999999999999998876543
Q ss_pred cccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHhhhh-c
Q 002241 514 ILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLISNRGDYDVIFDGIHENILQL-Q 592 (948)
Q Consensus 514 ~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~gd~d~i~~~l~eNyl~~-~ 592 (948)
.++...+ ++..+....+|++++.++....... .....+.+.+++........++..++..+... .
T Consensus 247 ~i~~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~----------~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 312 (354)
T 1sxj_E 247 ALKSSSP----IIKPDWIIVIHKLTRKIVKERSVNS----------LIECRAVLYDLLAHCIPANIILKELTFSLLDVET 312 (354)
T ss_dssp EECSSCC----CCCCHHHHHHHHHHHHHHHCCSHHH----------HHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTT
T ss_pred CcCcCcC----CCCccHHHHHHHHHHHHHHhcchhH----------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 3443222 3445555678999999997532111 12233445566666778888888888755432 2
Q ss_pred cCChhHHHHHHHHHHhhhhhHH
Q 002241 593 YHDPVMLKTVKCLDCLGNSDLM 614 (948)
Q Consensus 593 ~~D~~l~~~~~a~d~Ls~~D~l 614 (948)
+.+ ....+++++|+..|.-
T Consensus 313 ~~~---~~l~~~~~~l~~~d~~ 331 (354)
T 1sxj_E 313 LNT---TNKSSIIEYSSVFDER 331 (354)
T ss_dssp SCH---HHHHHHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHHHHHHH
Confidence 333 3556788888887753
No 4
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.92 E-value=6.3e-24 Score=237.67 Aligned_cols=288 Identities=21% Similarity=0.268 Sum_probs=209.4
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
..+.+|++||||++|.+++|++...+.|..|++.
T Consensus 10 ~~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~---------------------------------------------- 43 (340)
T 1sxj_C 10 KENLPWVEKYRPETLDEVYGQNEVITTVRKFVDE---------------------------------------------- 43 (340)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT----------------------------------------------
T ss_pred ccCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhc----------------------------------------------
Confidence 3478999999999999999999988888888773
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CCcceecCCCCC
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG-----YHVVEVNASDDR 348 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG-----~~viEiNaSd~r 348 (948)
|. ..++||+||||+||||+|+++|+++. ..++++|+++.+
T Consensus 44 ---------------------------------g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 44 ---------------------------------GK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp ---------------------------------TC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred ---------------------------------CC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 00 02399999999999999999999863 358899999988
Q ss_pred ChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhcccccc
Q 002241 349 SSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428 (948)
Q Consensus 349 s~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~ 428 (948)
+.+.+++.+..+.+..... .+.+.|+||||+|.+.. ...+.|+.+++...
T Consensus 89 ~~~~ir~~i~~~~~~~~~~-~~~~~viiiDe~~~l~~---~~~~~L~~~le~~~-------------------------- 138 (340)
T 1sxj_C 89 GIDVVRNQIKDFASTRQIF-SKGFKLIILDEADAMTN---AAQNALRRVIERYT-------------------------- 138 (340)
T ss_dssp SHHHHHTHHHHHHHBCCSS-SCSCEEEEETTGGGSCH---HHHHHHHHHHHHTT--------------------------
T ss_pred cHHHHHHHHHHHHhhcccC-CCCceEEEEeCCCCCCH---HHHHHHHHHHhcCC--------------------------
Confidence 8888877777666533222 23489999999999853 56778888886421
Q ss_pred ccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 429 ASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 429 ~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
....+|++||... ..+.+++++|..+.|.+++.+++..+|..+|..+++.++++++..|++.++||+|.+++.||.+
T Consensus 139 --~~~~~il~~n~~~-~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 139 --KNTRFCVLANYAH-KLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSC 215 (340)
T ss_dssp --TTEEEEEEESCGG-GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTT
T ss_pred --CCeEEEEEecCcc-ccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1245888898754 3556788899999999999999999999999999999999999999999999999999999877
Q ss_pred HhcCc-----cccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHh-ccCChHHHHH
Q 002241 509 DKKKE-----ILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLIS-NRGDYDVIFD 582 (948)
Q Consensus 509 ~~~~~-----~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-s~gd~d~i~~ 582 (948)
+.... .++.+.+.. .++. .....+++++..+.... ....+..+..++. ...++..++.
T Consensus 216 ~~~~~~~~~~~it~~~v~~-~~~~-~~~~~i~~l~~~i~~~~--------------~~~al~~l~~l~~~~g~~~~~i~~ 279 (340)
T 1sxj_C 216 KATLDNPDEDEISDDVIYE-CCGA-PRPSDLKAVLKSILEDD--------------WGTAHYTLNKVRSAKGLALIDLIE 279 (340)
T ss_dssp TTTTCSSSCCCBCHHHHHH-HTTC-CCHHHHHHHHHHHHTSC--------------HHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHhcCCcccccccHHHHHH-HhCC-CCHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 64322 233333321 1221 11235677777666421 2234555666665 5667778888
Q ss_pred HHHHHhhhhccCChhHHHHHHHHHHhhhhhH
Q 002241 583 GIHENILQLQYHDPVMLKTVKCLDCLGNSDL 613 (948)
Q Consensus 583 ~l~eNyl~~~~~D~~l~~~~~a~d~Ls~~D~ 613 (948)
.++..+..+.+.. ......+++++..+|.
T Consensus 280 ~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 308 (340)
T 1sxj_C 280 GIVKILEDYELQN--EETRVHLLTKLADIEY 308 (340)
T ss_dssp HHHHHHTTSCCSS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCc--HHHHHHHHHHHHHHHH
Confidence 7777665433320 2355677777777664
No 5
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.91 E-value=4.7e-24 Score=234.30 Aligned_cols=287 Identities=21% Similarity=0.329 Sum_probs=206.7
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..+|++||+|++|.+++|++...+.|..|++.
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------------------------------------------------ 35 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVER------------------------------------------------ 35 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT------------------------------------------------
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC------------------------------------------------
Confidence 46899999999999999999988888777652
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCCh
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSS 350 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~ 350 (948)
+. ..++||+||||+|||++|+++|+++ +..++++|+++..+.
T Consensus 36 -------------------------------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 36 -------------------------------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (319)
T ss_dssp -------------------------------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT
T ss_pred -------------------------------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh
Confidence 00 0249999999999999999999986 456899999988776
Q ss_pred HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhcccccccc
Q 002241 351 STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKAS 430 (948)
Q Consensus 351 ~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~ 430 (948)
+.+...+..+...... ..+++.||||||+|.+.. ...+.|+.+++. ..
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~vliiDe~~~l~~---~~~~~L~~~le~----------------------------~~ 130 (319)
T 2chq_A 83 DVVRHKIKEFARTAPI-GGAPFKIIFLDEADALTA---DAQAALRRTMEM----------------------------YS 130 (319)
T ss_dssp TTSSHHHHHHHHSCCS-SSCCCEEEEEETGGGSCH---HHHHTTGGGTSS----------------------------SS
T ss_pred HHHHHHHHHHHhcCCC-CCCCceEEEEeCCCcCCH---HHHHHHHHHHHh----------------------------cC
Confidence 6666666655532221 235689999999999843 445555554431 11
Q ss_pred CCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002241 431 LLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 431 ~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
....+|++||... ..+..++++|..+.|.+++.+++..+|..++.++|+.++++++..|++.++||+|.+++.|+.++.
T Consensus 131 ~~~~~i~~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 131 KSCRFILSCNYVS-RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAA 209 (319)
T ss_dssp SSEEEEEEESCGG-GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChh-hcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2356888998754 234567778999999999999999999999999999999999999999999999999999999876
Q ss_pred cCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHHh-ccCChHHHHHHHHHHhh
Q 002241 511 KKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLIS-NRGDYDVIFDGIHENIL 589 (948)
Q Consensus 511 ~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-s~gd~d~i~~~l~eNyl 589 (948)
....++.+++.. .++ ......+|+++..++... ....+..+..++. ...++..++..+...+.
T Consensus 210 ~~~~i~~~~v~~-~~~-~~~~~~~~~l~~~~~~~~--------------~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~ 273 (319)
T 2chq_A 210 IGEVVDADTIYQ-ITA-TARPEEMTELIQTALKGN--------------FMEARELLDRLMVEYGMSGEDIVAQLFREII 273 (319)
T ss_dssp SSSCBCHHHHHH-HTT-CCCHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHH-HHC-CCCHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 544455444432 122 122336888888887532 1223444555554 55567777777776665
Q ss_pred hhccCChhHHHHHHHHHHhhhhhHHh
Q 002241 590 QLQYHDPVMLKTVKCLDCLGNSDLMH 615 (948)
Q Consensus 590 ~~~~~D~~l~~~~~a~d~Ls~~D~l~ 615 (948)
.+.+.. ....++++++..+|.-.
T Consensus 274 ~l~~~~---~~l~~~~~~l~~~~~~l 296 (319)
T 2chq_A 274 SMPIKD---SLKVQLIDKLGEVDFRL 296 (319)
T ss_dssp TSCSCT---THHHHHHHHHHHHHHHH
T ss_pred hccCCH---HHHHHHHHHHHHHHHHH
Confidence 433443 35667888888877643
No 6
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.91 E-value=1.5e-23 Score=231.08 Aligned_cols=288 Identities=20% Similarity=0.290 Sum_probs=210.5
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
.+.+|++||+|.+|.+++|++...+.|..|++..
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~---------------------------------------------- 44 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG---------------------------------------------- 44 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT----------------------------------------------
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcC----------------------------------------------
Confidence 4679999999999999999999999999988730
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CCcceecCCCCCC
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG-----YHVVEVNASDDRS 349 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG-----~~viEiNaSd~rs 349 (948)
. ..++||+||||+||||+|+++|++++ ..++++++++..+
T Consensus 45 ---------------------------------~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 89 (327)
T 1iqp_A 45 ---------------------------------S--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG 89 (327)
T ss_dssp ---------------------------------C--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH
T ss_pred ---------------------------------C--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc
Confidence 0 13599999999999999999999863 3488999987666
Q ss_pred hHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccc
Q 002241 350 SSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKA 429 (948)
Q Consensus 350 ~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~ 429 (948)
.+.+...+..+.....+ ..+++.+|||||+|.+.. ...+.|+.+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~-~~~~~~vliiDe~~~l~~---~~~~~L~~~le~~~--------------------------- 138 (327)
T 1iqp_A 90 INVIREKVKEFARTKPI-GGASFKIIFLDEADALTQ---DAQQALRRTMEMFS--------------------------- 138 (327)
T ss_dssp HHTTHHHHHHHHHSCCG-GGCSCEEEEEETGGGSCH---HHHHHHHHHHHHTT---------------------------
T ss_pred hHHHHHHHHHHHhhCCc-CCCCCeEEEEeCCCcCCH---HHHHHHHHHHHhcC---------------------------
Confidence 55566666655533222 125789999999999853 56777888876421
Q ss_pred cCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 430 SLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 430 ~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
....+|++||.... .+..++++|..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|.+++.|+.++
T Consensus 139 -~~~~~i~~~~~~~~-l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 139 -SNVRFILSCNYSSK-IIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp -TTEEEEEEESCGGG-SCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCCeEEEEeCCccc-cCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 12468889987642 3455677888999999999999999999999999999999999999999999999999999887
Q ss_pred hcCccccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHH-hccCChHHHHHHHHHHh
Q 002241 510 KKKEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLI-SNRGDYDVIFDGIHENI 588 (948)
Q Consensus 510 ~~~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i-~s~gd~d~i~~~l~eNy 588 (948)
.....++.+.+.. .++ .-....+++++..++...- ...+..+..++ ....++..++..++..+
T Consensus 217 ~~~~~i~~~~v~~-~~~-~~~~~~i~~l~~~~~~~~~--------------~~~~~~~~~ll~~~g~~~~~i~~~l~~~~ 280 (327)
T 1iqp_A 217 ALDKKITDENVFM-VAS-RARPEDIREMMLLALKGNF--------------LKAREKLREILLKQGLSGEDVLVQMHKEV 280 (327)
T ss_dssp TTCSEECHHHHHH-HTT-CCCHHHHHHHHHHHHHTCH--------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHG
T ss_pred hcCCCCCHHHHHH-HHC-CCCHHHHHHHHHHHHcCCH--------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6544444443332 111 1122367777777765321 12233444444 45667778888888776
Q ss_pred hhhccCChhHHHHHHHHHHhhhhhHHh
Q 002241 589 LQLQYHDPVMLKTVKCLDCLGNSDLMH 615 (948)
Q Consensus 589 l~~~~~D~~l~~~~~a~d~Ls~~D~l~ 615 (948)
....+. ......+++.+..+|.-.
T Consensus 281 ~~~~~~---~~~l~~~~~~l~~~~~~l 304 (327)
T 1iqp_A 281 FNLPIE---EPKKVLLADKIGEYNFRL 304 (327)
T ss_dssp GGSSSC---HHHHHHHHHHHHHHHHHH
T ss_pred HhccCC---HHHHHHHHHHHHHHHHHH
Confidence 543343 346677888888777643
No 7
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.91 E-value=1.4e-23 Score=234.33 Aligned_cols=291 Identities=19% Similarity=0.256 Sum_probs=205.5
Q ss_pred cccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCC
Q 002241 193 VVHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGN 272 (948)
Q Consensus 193 ~~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~ 272 (948)
...+.+|++||+|++|.+++|++...+.|..|++.+.
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~------------------------------------------- 57 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSAN------------------------------------------- 57 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTT-------------------------------------------
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCC-------------------------------------------
Confidence 4567899999999999999999999999988876310
Q ss_pred CCCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------CCcceecCCC
Q 002241 273 RWSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCG------YHVVEVNASD 346 (948)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG------~~viEiNaSd 346 (948)
..++||+||||+||||+|+++|++++ ..++++|+++
T Consensus 58 --------------------------------------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 58 --------------------------------------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp --------------------------------------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred --------------------------------------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 02399999999999999999999864 4789999999
Q ss_pred CCChHHHHHHHHHHHhhhc---------ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCch
Q 002241 347 DRSSSTIENKILDVVQMNS---------VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQP 417 (948)
Q Consensus 347 ~rs~~~~~~~I~~~~~~~s---------v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~ 417 (948)
.++...+.+.+..+..... ......+.||||||+|.+.. ...+.|+.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---~~~~~Ll~~le~~~--------------- 161 (353)
T 1sxj_D 100 ERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---DAQSALRRTMETYS--------------- 161 (353)
T ss_dssp CCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH---HHHHHHHHHHHHTT---------------
T ss_pred ccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH---HHHHHHHHHHHhcC---------------
Confidence 8777766666655443211 01124568999999999853 45677888776421
Q ss_pred hhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCC
Q 002241 418 EKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECD 497 (948)
Q Consensus 418 ~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GD 497 (948)
....+|++||.... .+.+++++|..+.|.+++.+++..+|..++..+++.++++++..|++.++||
T Consensus 162 -------------~~~~~il~~~~~~~-l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~ 227 (353)
T 1sxj_D 162 -------------GVTRFCLICNYVTR-IIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD 227 (353)
T ss_dssp -------------TTEEEEEEESCGGG-SCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC
T ss_pred -------------CCceEEEEeCchhh-CcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 12458889987653 4566777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCc------cccccccccceeccccccccHHHHHHHHHhcchhhhhccccCCCCCchhhHHHHHHHH
Q 002241 498 IRSCLNTLQFLDKKKE------ILNVMDIGSQVVGRKDMSRSAFDIWKEIFQKRKTKRLRNSVSSSSNVSNEFDFLHSLI 571 (948)
Q Consensus 498 IR~aIn~LQ~~~~~~~------~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 571 (948)
+|.+++.|+.++.... .++.+++.. .++ .-....+++++..+.... ....+..+..++
T Consensus 228 ~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~-~~~-~~~~~~~~~l~~~~~~~~--------------~~~a~~~l~~l~ 291 (353)
T 1sxj_D 228 LRRGITLLQSASKGAQYLGDGKNITSTQVEE-LAG-VVPHDILIEIVEKVKSGD--------------FDEIKKYVNTFM 291 (353)
T ss_dssp HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHH-HHT-CCCSHHHHHHHHHHHSCC--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCccccHHHHHH-HhC-CCCHHHHHHHHHHHhcCC--------------HHHHHHHHHHHH
Confidence 9999999997754311 344344332 112 111124566666554321 123345555666
Q ss_pred hccCChHHHHHHHHHHhhhhccCChhHHHHHHHHHHhhhhhHH
Q 002241 572 SNRGDYDVIFDGIHENILQLQYHDPVMLKTVKCLDCLGNSDLM 614 (948)
Q Consensus 572 ~s~gd~d~i~~~l~eNyl~~~~~D~~l~~~~~a~d~Ls~~D~l 614 (948)
....++..++..+.+.+.... .-.......++++|+..|.-
T Consensus 292 ~~g~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 332 (353)
T 1sxj_D 292 KSGWSAASVVNQLHEYYITND--NFDTNFKNQISWLLFTTDSR 332 (353)
T ss_dssp HTSCCCTTHHHHHHHHHHHCS--SSCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHH
Confidence 666777888888887765421 11234567888888887764
No 8
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.89 E-value=4.4e-22 Score=218.92 Aligned_cols=204 Identities=25% Similarity=0.353 Sum_probs=165.1
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
...+|++||+|.+|.+++|++...+.|..|++..
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~---------------------------------------------- 40 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDG---------------------------------------------- 40 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSC----------------------------------------------
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcC----------------------------------------------
Confidence 4679999999999999999999999999998730
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCC
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRS 349 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs 349 (948)
. ..++||+||||+||||+|+.+|+++ +..++++|+++.++
T Consensus 41 ---------------------------------~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 41 ---------------------------------N--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 85 (323)
T ss_dssp ---------------------------------C--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred ---------------------------------C--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC
Confidence 0 0239999999999999999999986 45689999999888
Q ss_pred hHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccc
Q 002241 350 SSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKA 429 (948)
Q Consensus 350 ~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~ 429 (948)
.+.+.+.+..+.........+++.+|||||+|.+.. ...+.|+.+++...
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---~~~~~L~~~le~~~--------------------------- 135 (323)
T 1sxj_B 86 IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---GAQQALRRTMELYS--------------------------- 135 (323)
T ss_dssp HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---HHHHTTHHHHHHTT---------------------------
T ss_pred hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---HHHHHHHHHHhccC---------------------------
Confidence 777776666555322222234589999999999853 55677787776421
Q ss_pred cCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 430 SLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 430 ~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
....+|++||+.. ..+..++++|..+.|.+++.+++..+|..++..+|+.++++++..|++.++||+|.+++.|+.++
T Consensus 136 -~~~~~il~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 136 -NSTRFAFACNQSN-KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp -TTEEEEEEESCGG-GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCceEEEEeCChh-hchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1245888998754 23456777899999999999999999999999999999999999999999999999999999887
Q ss_pred hc
Q 002241 510 KK 511 (948)
Q Consensus 510 ~~ 511 (948)
..
T Consensus 214 ~~ 215 (323)
T 1sxj_B 214 AG 215 (323)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.86 E-value=8.7e-21 Score=195.54 Aligned_cols=203 Identities=24% Similarity=0.371 Sum_probs=161.7
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..+|+++|+|.+|.+++|++...+.|..|++...
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~---------------------------------------------- 37 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKN---------------------------------------------- 37 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTC----------------------------------------------
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCC----------------------------------------------
Confidence 4689999999999999999999999999987310
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCCh
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSS 350 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~ 350 (948)
...+||+||||+|||++|+.+|+++ +..++++++++..+.
T Consensus 38 -----------------------------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 38 -----------------------------------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp -----------------------------------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred -----------------------------------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 1249999999999999999999986 356788999888877
Q ss_pred HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhcccccccc
Q 002241 351 STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKAS 430 (948)
Q Consensus 351 ~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~ 430 (948)
..+...+........ ....++.+|||||+|.+.. ...+.|+.+++...
T Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~~vliiDe~~~l~~---~~~~~l~~~l~~~~---------------------------- 130 (226)
T 2chg_A 83 DVVRHKIKEFARTAP-IGGAPFKIIFLDEADALTA---DAQAALRRTMEMYS---------------------------- 130 (226)
T ss_dssp HHHHHHHHHHHTSCC-STTCSCEEEEEETGGGSCH---HHHHHHHHHHHHTT----------------------------
T ss_pred HHHHHHHHHHhcccC-CCccCceEEEEeChhhcCH---HHHHHHHHHHHhcC----------------------------
Confidence 777666665554321 1235789999999999853 45667777765311
Q ss_pred CCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002241 431 LLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 431 ~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
....+|++||.... ....+++++..+.|.+++.+++..+|..++..+++.++++++..|++.++||+|.+++.|+.++.
T Consensus 131 ~~~~~i~~~~~~~~-~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 131 KSCRFILSCNYVSR-IIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAA 209 (226)
T ss_dssp TTEEEEEEESCGGG-SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhh-cCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 12458888887532 23445666779999999999999999999999999999999999999999999999999998876
Q ss_pred cC
Q 002241 511 KK 512 (948)
Q Consensus 511 ~~ 512 (948)
..
T Consensus 210 ~~ 211 (226)
T 2chg_A 210 IG 211 (226)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 10
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.86 E-value=2.4e-20 Score=209.73 Aligned_cols=232 Identities=19% Similarity=0.257 Sum_probs=167.4
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
...|++||+|++|.+++|++...+.|..|++...
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~---------------------------------------------- 36 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGR---------------------------------------------- 36 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTC----------------------------------------------
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCC----------------------------------------------
Confidence 4689999999999999999999999999887310
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGY------------------ 337 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~------------------ 337 (948)
....+||+||+|+||||+|+++|+.++.
T Consensus 37 ----------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 37 ----------------------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp ----------------------------------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred ----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 1147899999999999999999998864
Q ss_pred ------CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 338 ------HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 338 ------~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
+++++++++....+.+...+..+ .... ..+++.||||||+|.+. ....+.|+++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~--~~~~~~vliiDe~~~l~---~~~~~~Ll~~le~~---------- 146 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNV-QYAP--ARGRFKVYLIDEVHMLS---RHSFNALLKTLEEP---------- 146 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHT-TSCC--SSSSSEEEEEECGGGSC---HHHHHHHHHHHHSC----------
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHH-hhcc--ccCCeEEEEEECcchhc---HHHHHHHHHHHhcC----------
Confidence 35666665544444444433332 1111 23568999999999984 35678888887631
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLA 491 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~ 491 (948)
.....+|++||+... ....++++|..+.|.+++.+++..+|..++..+|+.++++++..|+
T Consensus 147 ------------------~~~~~~Il~~~~~~~-l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~ 207 (373)
T 1jr3_A 147 ------------------PEHVKFLLATTDPQK-LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 (373)
T ss_dssp ------------------CSSEEEEEEESCGGG-SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred ------------------CCceEEEEEeCChHh-CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 112457888886542 3345677899999999999999999999999999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHhc-CccccccccccceeccccccccHHHHHHHHHhc
Q 002241 492 EYTECDIRSCLNTLQFLDKK-KEILNVMDIGSQVVGRKDMSRSAFDIWKEIFQK 544 (948)
Q Consensus 492 e~s~GDIR~aIn~LQ~~~~~-~~~~~~~~i~~~~vg~kD~~~~lf~i~~~If~~ 544 (948)
+.++||+|.+++.++.+... ...++.+.+.. .++..+ ...+|+++..++..
T Consensus 208 ~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~-~~~~~~-~~~~~~l~~~~~~~ 259 (373)
T 1jr3_A 208 RAAEGSLRDALSLTDQAIASGDGQVSTQAVSA-MLGTLD-DDQALSLVEAMVEA 259 (373)
T ss_dssp HHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHH-HTTCCC-HHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHhcCCcccHHHHHH-HhCCCC-HHHHHHHHHHHHcC
Confidence 99999999999999776432 23344333332 122211 12456666666543
No 11
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.85 E-value=2.6e-20 Score=216.08 Aligned_cols=163 Identities=23% Similarity=0.275 Sum_probs=124.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
..+||+|||||||||+|++||+.++..+++++++.. +...++..+..+..... .+++.+|||||||.+.. ..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-~~~~ir~~~~~a~~~~~---~~~~~iLfIDEI~~l~~---~~q 123 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-GVKEIREAIERARQNRN---AGRRTILFVDEVHRFNK---SQQ 123 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-CHHHHHHHHHHHHHHHH---TTCCEEEEEETTTCC--------
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-CHHHHHHHHHHHHHhhh---cCCCcEEEEeChhhhCH---HHH
Confidence 579999999999999999999999999999998764 34455555555443322 45789999999999854 345
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC-CCchhhhhhccceEEEEecCcCHHHHHHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND-LYAPALRSLRQIAKVHVFIQPSVSRVVSR 470 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND-l~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~ 470 (948)
+.|+..++.. ...+|+.++. ........|.++|.++.|.+++.+++..+
T Consensus 124 ~~LL~~le~~------------------------------~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 124 DAFLPHIEDG------------------------------TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp -CCHHHHHTT------------------------------SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHhcC------------------------------ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHH
Confidence 6677777531 1335655543 22223356777899999999999999999
Q ss_pred HHHHhhh-------cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002241 471 LKHICNN-------ESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 471 L~~I~~~-------Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~ 511 (948)
|..++.. +++.++++++..|+..++||+|.++|.|+.++..
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADM 221 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999887 6688999999999999999999999999988653
No 12
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=2.9e-19 Score=198.95 Aligned_cols=217 Identities=17% Similarity=0.138 Sum_probs=152.5
Q ss_pred ccCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCC
Q 002241 194 VHEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNR 273 (948)
Q Consensus 194 ~~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~ 273 (948)
.++..|.+||+|.+|.+++|++...+.|..|+..+...
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~------------------------------------------ 51 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR------------------------------------------ 51 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT------------------------------------------
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc------------------------------------------
Confidence 45679999999999999999999999999999964310
Q ss_pred CCCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHH
Q 002241 274 WSNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTI 353 (948)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~ 353 (948)
......+||+||||||||++|+++|++++..++.+|++.......+
T Consensus 52 ----------------------------------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T 3pfi_A 52 ----------------------------------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDL 97 (338)
T ss_dssp ----------------------------------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHH
T ss_pred ----------------------------------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHH
Confidence 0012569999999999999999999999999999999887665554
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCC
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLR 433 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~r 433 (948)
...+.. ...+.+|||||||.+. ...+..|+..+............ ...+.........
T Consensus 98 ~~~~~~---------~~~~~vl~lDEi~~l~---~~~~~~Ll~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 AAILTN---------LSEGDILFIDEIHRLS---PAIEEVLYPAMEDYRLDIIIGSG----------PAAQTIKIDLPKF 155 (338)
T ss_dssp HHHHHT---------CCTTCEEEEETGGGCC---HHHHHHHHHHHHTSCC-------------------CCCCCCCCCCC
T ss_pred HHHHHh---------ccCCCEEEEechhhcC---HHHHHHHHHHHHhccchhhcccC----------ccccceecCCCCe
Confidence 433321 3467999999999985 35677788877653221100000 0000000001124
Q ss_pred cEEEEecCCCchhhhhhccce-EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 434 PVICICNDLYAPALRSLRQIA-KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 434 PII~icNDl~~p~Lr~Lr~~~-~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
.+|++||.... ...+|++++ ..+.|.+|+.+++..+|..++...++.++++++..|+..+.|++|.+++.++.+.
T Consensus 156 ~~i~atn~~~~-l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 156 TLIGATTRAGM-LSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp EEEEEESCGGG-SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred EEEEeCCCccc-cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57788886432 112344444 8999999999999999999999999999999999999999999999999998753
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.81 E-value=5e-19 Score=184.28 Aligned_cols=200 Identities=20% Similarity=0.239 Sum_probs=148.0
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
...+|++||+|+.|.+++|++...+.|..|+....
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~--------------------------------------------- 43 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGR--------------------------------------------- 43 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTC---------------------------------------------
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCC---------------------------------------------
Confidence 46799999999999999999999999999987410
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYH---------------- 338 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~---------------- 338 (948)
..++++|+||||+||||+|+.+|++++..
T Consensus 44 -----------------------------------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 44 -----------------------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp -----------------------------------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred -----------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 01479999999999999999999987542
Q ss_pred --------cceecCCCCCChHHHHHHHHHHHhhhcc-cccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccc
Q 002241 339 --------VVEVNASDDRSSSTIENKILDVVQMNSV-MADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKE 409 (948)
Q Consensus 339 --------viEiNaSd~rs~~~~~~~I~~~~~~~sv-~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~ 409 (948)
++.++........ .+...+..... ....++.+|||||+|.+. ...++.|+.++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~vlviDe~~~l~---~~~~~~l~~~l~~~-------- 153 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLS---RHSFNALLKTLEEP-------- 153 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHH----HHHHHHHSCCCSCSSSSSEEEEEETGGGSC---HHHHHHHHHHHHSC--------
T ss_pred HhccCCcceEEecCcccccHH----HHHHHHHHhhhchhcCCceEEEEECccccc---HHHHHHHHHHHhcC--------
Confidence 2333333222222 22333322111 124568999999999873 35667777776521
Q ss_pred cccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHH
Q 002241 410 NVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTT 489 (948)
Q Consensus 410 ~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~ 489 (948)
.....+|++||.... ....+++++..+.|.+++.+++..++..++..+++.++++++..
T Consensus 154 --------------------~~~~~~i~~t~~~~~-~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~ 212 (250)
T 1njg_A 154 --------------------PEHVKFLLATTDPQK-LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQL 212 (250)
T ss_dssp --------------------CTTEEEEEEESCGGG-SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHH
T ss_pred --------------------CCceEEEEEeCChHh-CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 112457888886532 22345566889999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 002241 490 LAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 490 L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
|++.++|++|.+++.++.+..
T Consensus 213 l~~~~~G~~~~~~~~~~~~~~ 233 (250)
T 1njg_A 213 LARAAEGSLRDALSLTDQAIA 233 (250)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHh
Confidence 999999999999999987754
No 14
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=195.15 Aligned_cols=215 Identities=19% Similarity=0.172 Sum_probs=149.1
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..-|+++|+|.+|+|++|++...+.|..|+...... ...+.
T Consensus 102 ~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~-------------------------------~~~~~-------- 142 (389)
T 3vfd_A 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLR-------------------------------PELFT-------- 142 (389)
T ss_dssp GGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHC-------------------------------TTTSC--------
T ss_pred HhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccC-------------------------------HHHhc--------
Confidence 456999999999999999999999999988742110 00000
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HH
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TI 353 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~ 353 (948)
..+ ...+.+||+||||||||++|+++|++++..++++++++..+.. ..
T Consensus 143 -----------------------------~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~ 192 (389)
T 3vfd_A 143 -----------------------------GLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEG 192 (389)
T ss_dssp -----------------------------GGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------C
T ss_pred -----------------------------ccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchH
Confidence 001 1247899999999999999999999999999999999876532 22
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccc
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~ 425 (948)
...+...+.... ...++||||||||.+..... ..+..|+..+.....
T Consensus 193 ~~~~~~~~~~a~---~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------------------- 247 (389)
T 3vfd_A 193 EKLVRALFAVAR---ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS---------------------- 247 (389)
T ss_dssp HHHHHHHHHHHH---HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHH---hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc----------------------
Confidence 233444433222 34678999999999864321 223334444332110
Q ss_pred cccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHH
Q 002241 426 CKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLN 503 (948)
Q Consensus 426 ~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn 503 (948)
.......||++||... .+.+ ++++...+.|..|+.+++..+|..++..+++.+++..+..|+..+.|+.+..|+
T Consensus 248 --~~~~~v~vI~atn~~~~l~~~l--~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 248 --AGDDRVLVMGATNRPQELDEAV--LRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp ------CEEEEEEESCGGGCCHHH--HTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred --cCCCCEEEEEecCCchhcCHHH--HcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 0012345788898744 2333 334557899999999999999999999999999999999999999998888887
Q ss_pred HHHHH
Q 002241 504 TLQFL 508 (948)
Q Consensus 504 ~LQ~~ 508 (948)
.|.-.
T Consensus 324 ~L~~~ 328 (389)
T 3vfd_A 324 ALAKD 328 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 15
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1e-17 Score=189.87 Aligned_cols=179 Identities=22% Similarity=0.303 Sum_probs=129.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|.+.++.+|||||||||||+||+++|+++|.+++.+++++..++ +.....++..+.... ...|+||||||||.+.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar---~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR---EHAPSIIFMDEIDSIG 254 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH---HTCSEEEEEESSSCCT
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH---HhCCceEeeecchhhc
Confidence 45567999999999999999999999999999999999988765 345566777776544 4679999999999986
Q ss_pred CCC-----h---hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 GDG-----K---GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~~~-----~---~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
+.+ . .....+..++..-.. . .....+-||++||... ++++.+-.++.
T Consensus 255 ~~R~~~~~~~~~~~~~~l~~lL~~lDg-----~------------------~~~~~V~vIaATNrpd~LDpAllRpGRfD 311 (405)
T 4b4t_J 255 STRVEGSGGGDSEVQRTMLELLNQLDG-----F------------------ETSKNIKIIMATNRLDILDPALLRPGRID 311 (405)
T ss_dssp TSCSCSSSGGGGHHHHHHHHHHHHHHT-----T------------------TCCCCEEEEEEESCSSSSCHHHHSTTSSC
T ss_pred cCCCCCCCCCcHHHHHHHHHHHHhhhc-----c------------------CCCCCeEEEeccCChhhCCHhHcCCCcCc
Confidence 531 1 112223333322100 0 0011244777888654 67775445799
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhcC
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDKKK 512 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~~~ 512 (948)
..|.|+.|+.+.+.++|+.++.+.++. ++..+..|++.+.| ||+.+++...+.+.+.
T Consensus 312 ~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 312 RKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp CEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999988775553 23347888887654 9999998887776543
No 16
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-17 Score=190.17 Aligned_cols=222 Identities=19% Similarity=0.221 Sum_probs=156.2
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..+-+++=-..+|+|+.|-+...++|...+..--. ++.++
T Consensus 169 ~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~-------------------------------~pe~f--------- 208 (437)
T 4b4t_I 169 SVMKMDKSPTESYSDIGGLESQIQEIKESVELPLT-------------------------------HPELY--------- 208 (437)
T ss_dssp CCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHH-------------------------------CCHHH---------
T ss_pred eeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHh-------------------------------CHHHH---------
Confidence 45667777788999999999999888887663100 01111
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHH
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STI 353 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~ 353 (948)
...|.+.++.+|||||||||||++|+++|.++|.+++.+++++..++ ...
T Consensus 209 ----------------------------~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 209 ----------------------------EEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp ----------------------------HHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHH
T ss_pred ----------------------------HhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchH
Confidence 11355667999999999999999999999999999999999988765 344
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCC--------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccc
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG--------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~--------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~ 425 (948)
...++..+.... ...|+||||||||.+...+ ......+..+++.-.. .
T Consensus 261 ek~ir~lF~~Ar---~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg-----~---------------- 316 (437)
T 4b4t_I 261 PRLCRQIFKVAG---ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG-----F---------------- 316 (437)
T ss_dssp HHHHHHHHHHHH---HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH-----C----------------
T ss_pred HHHHHHHHHHHH---hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC-----c----------------
Confidence 556666665543 4579999999999986532 1222334444432110 0
Q ss_pred cccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHcc----CCHH
Q 002241 426 CKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE----CDIR 499 (948)
Q Consensus 426 ~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~----GDIR 499 (948)
.....+-||++||... ++++..-.++...|+|+.|+.+++.++|+.++.+..+. ++..+..|++.+. .||+
T Consensus 317 --~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~ 393 (437)
T 4b4t_I 317 --DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQ 393 (437)
T ss_dssp --CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHH
T ss_pred --CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHH
Confidence 0012345778888654 56664444789999999999999999999888775543 2234788888764 4999
Q ss_pred HHHHHHHHHHhcC
Q 002241 500 SCLNTLQFLDKKK 512 (948)
Q Consensus 500 ~aIn~LQ~~~~~~ 512 (948)
.+++...+.+.+.
T Consensus 394 ~l~~eA~~~Air~ 406 (437)
T 4b4t_I 394 AMCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9998887776543
No 17
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.2e-18 Score=193.30 Aligned_cols=178 Identities=20% Similarity=0.250 Sum_probs=127.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|.+.++++|||||||||||++|++||+++|++++.+++++..++. .....+...+.... ...|+||||||||.+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~---~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK---EHEPCIIFMDEVDAIG 287 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH---HSCSEEEEEECCCSSS
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH---hcCCceeeeecccccc
Confidence 456679999999999999999999999999999999999887653 34455666665443 4679999999999986
Q ss_pred CCC-------hh-HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 GDG-------KG-AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~~~-------~~-~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
..+ .. ....+..++..-.. . .....+.||++||... +|++....++.
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg-----~------------------~~~~~vivI~ATNrp~~LDpAllRpGRfD 344 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDG-----F------------------DNLGQTKIIMATNRPDTLDPALLRPGRLD 344 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHS-----S------------------SCTTSSEEEEEESSTTSSCTTTTSTTSEE
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhc-----c------------------cCCCCeEEEEecCCchhhCHHHhCCCccc
Confidence 432 11 12222233321100 0 0012356888888654 66665445589
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhc
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDKK 511 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~~ 511 (948)
..|+|+.|+.+.+..+|+.++.+..+. ++..+..|++.+.| ||+.+++..-+.+.+
T Consensus 345 ~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 345 RKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888775542 23347888887654 999999887776654
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.75 E-value=2.3e-17 Score=182.14 Aligned_cols=214 Identities=16% Similarity=0.130 Sum_probs=152.2
Q ss_pred cchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCC
Q 002241 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNG 277 (948)
Q Consensus 198 LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~ 277 (948)
+|.+||+|.+|.+++|.+...+.|..|+..+...
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~---------------------------------------------- 34 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKAR---------------------------------------------- 34 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHcc----------------------------------------------
Confidence 5889999999999999999999999998864210
Q ss_pred CccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHH
Q 002241 278 NFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKI 357 (948)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I 357 (948)
....+.+||+||||||||++|+++|++++..++.++++.......+...
T Consensus 35 ------------------------------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~- 83 (324)
T 1hqc_A 35 ------------------------------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAI- 83 (324)
T ss_dssp ------------------------------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHH-
T ss_pred ------------------------------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHH-
Confidence 0012579999999999999999999999999999999887665444332
Q ss_pred HHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEE
Q 002241 358 LDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVIC 437 (948)
Q Consensus 358 ~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ 437 (948)
+.. ....+.+|||||||.+.. .....|+.+++.......... . ...+..........+|+
T Consensus 84 ---l~~----~~~~~~~l~lDEi~~l~~---~~~~~L~~~l~~~~~~~v~~~---~-------~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 84 ---LAN----SLEEGDILFIDEIHRLSR---QAEEHLYPAMEDFVMDIVIGQ---G-------PAARTIRLELPRFTLIG 143 (324)
T ss_dssp ---HTT----TCCTTCEEEETTTTSCCH---HHHHHHHHHHHHSEEEECCSS---S-------SSCCCEEEECCCCEEEE
T ss_pred ---HHH----hccCCCEEEEECCccccc---chHHHHHHHHHhhhhHHhccc---c-------ccccccccCCCCEEEEE
Confidence 221 024678999999998853 466777777765321100000 0 00000000112345788
Q ss_pred EecCCCchhhhhhccce-EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 438 ICNDLYAPALRSLRQIA-KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 438 icNDl~~p~Lr~Lr~~~-~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
+||.... ....+..++ .++.|.+|+.+++..+|..++...++.++++++..|+..+.|++|.+.+.++.+.
T Consensus 144 ~t~~~~~-~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 144 ATTRPGL-ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EESCCSS-CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred eCCCccc-CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8886532 112344455 7899999999999999999999999999999999999999999999999988774
No 19
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8e-18 Score=193.27 Aligned_cols=221 Identities=17% Similarity=0.186 Sum_probs=153.9
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..+-+++=-+.+|+|+.|-+...++|..++...-. ++..+
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~-------------------------------~pe~f--------- 207 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMK-------------------------------RADKF--------- 207 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHH-------------------------------CSHHH---------
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHh-------------------------------CHHHH---------
Confidence 34556666778999999999999999887663110 00111
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HH
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TI 353 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~ 353 (948)
...|.+.++.+|||||||||||++|+++|.++|.+++.+++++..++. ..
T Consensus 208 ----------------------------~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 208 ----------------------------KDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp ----------------------------HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHH
T ss_pred ----------------------------HhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchH
Confidence 113566679999999999999999999999999999999999887653 44
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccc
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~ 425 (948)
...++.++.... ...|+||||||||.+.+.+. .....+..++..-.. .
T Consensus 260 e~~ir~lF~~A~---~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg-----~---------------- 315 (434)
T 4b4t_M 260 AKLVRDAFALAK---EKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG-----F---------------- 315 (434)
T ss_dssp HHHHHHHHHHHH---HHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT-----S----------------
T ss_pred HHHHHHHHHHHH---hcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc-----c----------------
Confidence 556666665443 35799999999999865321 111222333322100 0
Q ss_pred cccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHH
Q 002241 426 CKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIR 499 (948)
Q Consensus 426 ~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR 499 (948)
.....+-||++||... ++++..-.++...|+|+.|+.+++.++|+.++.+..+. ++-.+..|++.+.| ||+
T Consensus 316 --~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~ 392 (434)
T 4b4t_M 316 --SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLK 392 (434)
T ss_dssp --CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHH
T ss_pred --CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHH
Confidence 0011345777888654 56665455799999999999999999999888875542 22247888887654 999
Q ss_pred HHHHHHHHHHhc
Q 002241 500 SCLNTLQFLDKK 511 (948)
Q Consensus 500 ~aIn~LQ~~~~~ 511 (948)
.+++..-+.+.+
T Consensus 393 ~l~~eA~~~a~r 404 (434)
T 4b4t_M 393 AVTVEAGMIALR 404 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887766644
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.74 E-value=2.5e-17 Score=183.04 Aligned_cols=215 Identities=17% Similarity=0.179 Sum_probs=153.9
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
.-|+++|.+.+|+|++|.+...+.|..++..... .+..+.
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~-------------------------------~~~~~~--------- 45 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVK-------------------------------FPHLFK--------- 45 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHH-------------------------------CGGGCC---------
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHh-------------------------------CHHHHh---------
Confidence 4689999999999999999999999998874110 000000
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHH
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIE 354 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~ 354 (948)
.+....+.+||+||||||||++|+++|++++..++.+++++..+. ....
T Consensus 46 -----------------------------~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~ 96 (322)
T 3eie_A 46 -----------------------------GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 96 (322)
T ss_dssp -----------------------------TTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHH
T ss_pred -----------------------------cCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHH
Confidence 012234789999999999999999999999999999999875432 3344
Q ss_pred HHHHHHHhhhcccccCCCcEEEecCcccccCCCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhcccc
Q 002241 355 NKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGC 426 (948)
Q Consensus 355 ~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~ 426 (948)
..+...+.... ...|+||||||||.+..... .....|+..+.....
T Consensus 97 ~~~~~~f~~a~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------------------- 150 (322)
T 3eie_A 97 KLVKQLFAMAR---ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN----------------------- 150 (322)
T ss_dssp HHHHHHHHHHH---HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT-----------------------
T ss_pred HHHHHHHHHHH---hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc-----------------------
Confidence 45555544332 35789999999999875321 223444444432100
Q ss_pred ccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHH
Q 002241 427 KKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRS 500 (948)
Q Consensus 427 ~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~ 500 (948)
......||++||... ++.++ +++...+.|..|+.+++..+|+.++...+..+++..+..|++.+.| ||+.
T Consensus 151 --~~~~v~vi~atn~~~~ld~al~--~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 151 --DSQGVLVLGATNIPWQLDSAIR--RRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp --SCCCEEEEEEESCGGGSCHHHH--HHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred --cCCceEEEEecCChhhCCHHHH--cccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 012345777888743 44443 3577889999999999999999999998888899999999998876 8888
Q ss_pred HHHHHHHHHh
Q 002241 501 CLNTLQFLDK 510 (948)
Q Consensus 501 aIn~LQ~~~~ 510 (948)
+++...+.+.
T Consensus 227 l~~~a~~~a~ 236 (322)
T 3eie_A 227 VVKDALMQPI 236 (322)
T ss_dssp HHHHHTTHHH
T ss_pred HHHHHHHHHH
Confidence 8776655543
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.73 E-value=2.6e-17 Score=185.48 Aligned_cols=217 Identities=17% Similarity=0.182 Sum_probs=144.8
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..+|+.+|.+.+|.||+|.+...+.|..++..-.. .+..+.
T Consensus 38 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~-------------------------------~~~~~~-------- 78 (355)
T 2qp9_X 38 SSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVK-------------------------------FPHLFK-------- 78 (355)
T ss_dssp ---------CCCGGGSCCGGGHHHHHHHHTHHHHH-------------------------------CGGGGC--------
T ss_pred hhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHh-------------------------------CHHHHh--------
Confidence 36789999999999999999999999888763100 000000
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHH
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STI 353 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~ 353 (948)
.+....+.+||+||||||||++|+++|++++..++.+++++..+. ...
T Consensus 79 ------------------------------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~ 128 (355)
T 2qp9_X 79 ------------------------------GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 128 (355)
T ss_dssp ------------------------------SSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---C
T ss_pred ------------------------------cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchH
Confidence 012234789999999999999999999999999999998765332 122
Q ss_pred HHHHHHHHhhhcccccCCCcEEEecCcccccCCCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccc
Q 002241 354 ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425 (948)
Q Consensus 354 ~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~ 425 (948)
...+...+.... ...|+||||||||.+..... ...+.|+..+.....
T Consensus 129 ~~~~~~~f~~a~---~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~---------------------- 183 (355)
T 2qp9_X 129 EKLVKQLFAMAR---ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN---------------------- 183 (355)
T ss_dssp HHHHHHHHHHHH---HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHH---HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc----------------------
Confidence 333444433221 35789999999999875321 123444444432100
Q ss_pred cccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHH
Q 002241 426 CKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIR 499 (948)
Q Consensus 426 ~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR 499 (948)
......||++||... ++.+. +++...+.|..|+.+++..+|+.++...++.+++..+..|++.+.| ||+
T Consensus 184 ---~~~~v~vI~atn~~~~ld~al~--rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~ 258 (355)
T 2qp9_X 184 ---DSQGVLVLGATNIPWQLDSAIR--RRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIA 258 (355)
T ss_dssp -----CCEEEEEEESCGGGSCHHHH--HTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHH
T ss_pred ---cCCCeEEEeecCCcccCCHHHH--cccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 012345778888763 44443 3566889999999999999999999988888899999999999888 899
Q ss_pred HHHHHHHHHHhc
Q 002241 500 SCLNTLQFLDKK 511 (948)
Q Consensus 500 ~aIn~LQ~~~~~ 511 (948)
.+++.+.+.+.+
T Consensus 259 ~l~~~A~~~a~~ 270 (355)
T 2qp9_X 259 VVVKDALMQPIR 270 (355)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988887766544
No 22
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.5e-17 Score=186.91 Aligned_cols=179 Identities=20% Similarity=0.248 Sum_probs=127.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|.+.++++|||||||||||++|+++|+++|.+++.+++++..++ +.....++..+.... ...|+||+|||||.+.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~---~~aP~IifiDEiD~i~ 278 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAR---ENAPSIIFIDEVDSIA 278 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHH---HTCSEEEEEECTHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHH---HcCCCeeechhhhhhh
Confidence 45667999999999999999999999999999999999987665 345566766666543 4579999999999886
Q ss_pred CCC--------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 GDG--------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~~~--------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
..+ ......+..++..-.. . ....++-||++||... ++++....++.
T Consensus 279 ~~R~~~~~~~~~~~~r~l~~lL~~ldg-----~------------------~~~~~v~vI~aTN~~~~LD~AllRpGRfd 335 (428)
T 4b4t_K 279 TKRFDAQTGSDREVQRILIELLTQMDG-----F------------------DQSTNVKVIMATNRADTLDPALLRPGRLD 335 (428)
T ss_dssp CSCSSSCSCCCCHHHHHHHHHHHHHHH-----S------------------CSSCSEEEEEEESCSSSCCHHHHSSSSEE
T ss_pred ccccCCCCCCChHHHHHHHHHHHHhhC-----C------------------CCCCCEEEEEecCChhhcChhhhcCCcce
Confidence 431 1122223333321100 0 0112345888888654 67775445788
Q ss_pred EEEEec-CcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhcC
Q 002241 455 KVHVFI-QPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDKKK 512 (948)
Q Consensus 455 ~iI~F~-~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~~~ 512 (948)
..|.|+ .|+..++..+|+.++.+..+. ++..+..|++.+.| ||+.+++..-+.+.+.
T Consensus 336 ~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 336 RKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 899995 799999999999998775542 23347888887654 9999998877666543
No 23
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.6e-17 Score=188.83 Aligned_cols=178 Identities=19% Similarity=0.236 Sum_probs=127.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|.+.++.+|||||||||||+||++||+++|..++.+++++..++ ......++..+.... ...|+||||||||.+.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar---~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMAR---TKKACIIFFDEIDAVG 315 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHH---HTCSEEEEEECCTTTS
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHH---hcCCceEeeccccccc
Confidence 45567999999999999999999999999999999999988765 344556666666543 4679999999999986
Q ss_pred CCC--------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 GDG--------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~~~--------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
..+ ......+..++..-.. . .....+.||++||... ++++....++.
T Consensus 316 ~~R~~~~~~~~~~~~~~l~~lL~~lDg-----~------------------~~~~~ViVIaATNrpd~LDpALlRpGRFD 372 (467)
T 4b4t_H 316 GARFDDGAGGDNEVQRTMLELITQLDG-----F------------------DPRGNIKVMFATNRPNTLDPALLRPGRID 372 (467)
T ss_dssp BCCSSSSCGGGGHHHHHHHHHHHHHHS-----S------------------CCTTTEEEEEECSCTTSBCHHHHSTTTCC
T ss_pred ccccCcCCCccHHHHHHHHHHHHHhhc-----c------------------CCCCcEEEEeCCCCcccCChhhhcccccc
Confidence 432 1122233333332110 0 0011244677788654 66765445799
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhc
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDKK 511 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~~ 511 (948)
..|+|+.|+.+++.++|+.++.+..+. .+..+..|++.+.| ||+.+++..-+.+.+
T Consensus 373 ~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air 432 (467)
T 4b4t_H 373 RKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432 (467)
T ss_dssp EEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888775543 12346778887655 999999887776654
No 24
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=8e-17 Score=176.01 Aligned_cols=212 Identities=20% Similarity=0.193 Sum_probs=147.7
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
..|+++|+|.+|++++|++...+.|..++...... +..+.
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~-------------------------------~~~~~--------- 48 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVR-------------------------------PELFT--------- 48 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHC-------------------------------GGGSC---------
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhC-------------------------------HHHHh---------
Confidence 36999999999999999999999999988741100 00000
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHH
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIE 354 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~ 354 (948)
.. ....+.+||+|||||||||+|+++|++++..++.+++++..+.. ...
T Consensus 49 ----------------------------~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~ 99 (297)
T 3b9p_A 49 ----------------------------GL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGE 99 (297)
T ss_dssp ----------------------------GG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHH
T ss_pred ----------------------------cC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHH
Confidence 00 11247899999999999999999999999999999998765431 223
Q ss_pred HHHHHHHhhhcccccCCCcEEEecCcccccCCC--------hhHHHHHHHHHHhhhccccccccccccCchhhhhhcccc
Q 002241 355 NKILDVVQMNSVMADSRPKCLVIDEIDGALGDG--------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGC 426 (948)
Q Consensus 355 ~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~--------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~ 426 (948)
..+...+.... ...|++|||||||.+.... ......|+..+......
T Consensus 100 ~~~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---------------------- 154 (297)
T 3b9p_A 100 KLVRALFAVAR---HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN---------------------- 154 (297)
T ss_dssp HHHHHHHHHHH---HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHH---HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc----------------------
Confidence 33333333222 3578999999999986532 12333444444321100
Q ss_pred ccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHH
Q 002241 427 KKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNT 504 (948)
Q Consensus 427 ~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~ 504 (948)
......-||++||... .+.+. +++...+.|+.|+.+.+..+|..++.+.+..+++..+..|+..+.|..+..|..
T Consensus 155 -~~~~~v~vi~~tn~~~~l~~~l~--~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 155 -PDGDRIVVLAATNRPQELDEAAL--RRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHH--HHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred -CCCCcEEEEeecCChhhCCHHHH--hhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 0011245788888754 33333 356688999999999999999999999998899999999999999977766654
Q ss_pred H
Q 002241 505 L 505 (948)
Q Consensus 505 L 505 (948)
|
T Consensus 232 l 232 (297)
T 3b9p_A 232 L 232 (297)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=1.4e-16 Score=179.21 Aligned_cols=176 Identities=18% Similarity=0.142 Sum_probs=115.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC--CcceecCCCCCC---------------------------------------
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY--HVVEVNASDDRS--------------------------------------- 349 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~--~viEiNaSd~rs--------------------------------------- 349 (948)
.+.+||+||||||||++|+++|++++. .++.++++...+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~ 149 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINS 149 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhc
Confidence 378999999999999999999999985 444555432110
Q ss_pred ----------------hHHHHHHHHHHHhhhcccc--cCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccc
Q 002241 350 ----------------SSTIENKILDVVQMNSVMA--DSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENV 411 (948)
Q Consensus 350 ----------------~~~~~~~I~~~~~~~sv~~--~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~ 411 (948)
...++..+..+.......+ ...|.||||||||.+. ....+.|+++++......
T Consensus 150 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~---~~~~~~L~~~le~~~~~~------ 220 (368)
T 3uk6_A 150 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD---IESFSFLNRALESDMAPV------ 220 (368)
T ss_dssp ----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB---HHHHHHHHHHTTCTTCCE------
T ss_pred ccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC---hHHHHHHHHHhhCcCCCe------
Confidence 1122222322222111001 1236799999999984 356667776664311100
Q ss_pred cccCchhhhhhccccccccCCCcEEEEecC---CCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHH
Q 002241 412 AKEDQPEKISKKKGCKKASLLRPVICICND---LYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALT 488 (948)
Q Consensus 412 ~~~~~~~k~~~kk~~~~~~~~rPII~icND---l~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~ 488 (948)
....+++++.+|+.. ........++++|..+.|.+|+.+++..+|...+..+++.++++++.
T Consensus 221 ---------------~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~ 285 (368)
T 3uk6_A 221 ---------------LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYT 285 (368)
T ss_dssp ---------------EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred ---------------eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 000111222221111 11222245677888899999999999999999999999999999999
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHh
Q 002241 489 TLAEYTE-CDIRSCLNTLQFLDK 510 (948)
Q Consensus 489 ~L~e~s~-GDIR~aIn~LQ~~~~ 510 (948)
.|++.+. ||+|.+++.|+.++.
T Consensus 286 ~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 286 VLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999998 999999999987653
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=178.36 Aligned_cols=209 Identities=18% Similarity=0.171 Sum_probs=144.4
Q ss_pred chhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCCC
Q 002241 199 WVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNGN 278 (948)
Q Consensus 199 WvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~~ 278 (948)
++++|.|.+|++++|.+...+.|..++..--. .+..+.
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~-------------------------------~~~~~~----------- 111 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPML-------------------------------RPDIFT----------- 111 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHH-------------------------------CTTTSC-----------
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhh-------------------------------ChHhHh-----------
Confidence 67889999999999999999999998873100 000000
Q ss_pred ccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHH
Q 002241 279 FRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENK 356 (948)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~ 356 (948)
. .....+.+||+||||||||++|+++|++++..++.+++++..+. ......
T Consensus 112 --------------------------~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~ 164 (357)
T 3d8b_A 112 --------------------------G-LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKM 164 (357)
T ss_dssp --------------------------G-GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHH
T ss_pred --------------------------h-ccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHH
Confidence 0 01124789999999999999999999999999999999886553 233344
Q ss_pred HHHHHhhhcccccCCCcEEEecCcccccCCCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhcccccc
Q 002241 357 ILDVVQMNSVMADSRPKCLVIDEIDGALGDGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428 (948)
Q Consensus 357 I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~ 428 (948)
+...+.... ...+.||||||||.+..... ..+..|+..+..... .
T Consensus 165 ~~~~~~~a~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~------------------------~ 217 (357)
T 3d8b_A 165 VRALFAVAR---CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT------------------------S 217 (357)
T ss_dssp HHHHHHHHH---HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHH---hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc------------------------c
Confidence 444443222 35689999999999865321 122334443331100 0
Q ss_pred ccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHH
Q 002241 429 ASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCL 502 (948)
Q Consensus 429 ~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aI 502 (948)
......||++||... .+.+ ++++...+.|..|+.+++..+|..++..+++.+++..+..|++.+.| ||+.++
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l--~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAA--RRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHH--HTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHH--HhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 012345778888753 3333 23566788999999999999999999999999999999999999888 555555
Q ss_pred HHH
Q 002241 503 NTL 505 (948)
Q Consensus 503 n~L 505 (948)
+..
T Consensus 296 ~~a 298 (357)
T 3d8b_A 296 REA 298 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 27
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.70 E-value=1.8e-16 Score=169.79 Aligned_cols=214 Identities=21% Similarity=0.230 Sum_probs=138.5
Q ss_pred cchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCCC
Q 002241 198 LWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSNG 277 (948)
Q Consensus 198 LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~~ 277 (948)
+|+++|.+.+|+|++|.+...+.|...+..... . ..+
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~---~----------------------------~~~------------ 37 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLRE---P----------------------------SRF------------ 37 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHC---G----------------------------GGC------------
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhC---H----------------------------HHH------------
Confidence 799999999999999999998888776542110 0 000
Q ss_pred CccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHH
Q 002241 278 NFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIEN 355 (948)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~ 355 (948)
...+....+.+||+|||||||||+|+++|++++..++.+++++.... .....
T Consensus 38 --------------------------~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~ 91 (257)
T 1lv7_A 38 --------------------------QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 91 (257)
T ss_dssp -------------------------------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHH
T ss_pred --------------------------HHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHH
Confidence 00122234679999999999999999999999999999999876432 11223
Q ss_pred HHHHHHhhhcccccCCCcEEEecCcccccCCCh-----------hHHHHHHHHHHhhhccccccccccccCchhhhhhcc
Q 002241 356 KILDVVQMNSVMADSRPKCLVIDEIDGALGDGK-----------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKK 424 (948)
Q Consensus 356 ~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~-----------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk 424 (948)
.+...++... ...|++|+|||||.+..... ..+..++..+....
T Consensus 92 ~~~~~~~~a~---~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------------- 146 (257)
T 1lv7_A 92 RVRDMFEQAK---KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------------------- 146 (257)
T ss_dssp HHHHHHHHHH---TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC----------------------
T ss_pred HHHHHHHHHH---HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc----------------------
Confidence 3444443322 34688999999998865321 12233333332100
Q ss_pred ccccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CH
Q 002241 425 GCKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DI 498 (948)
Q Consensus 425 ~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DI 498 (948)
......||++||... ++.+....++...+.|..|+.+++..+|+..+.+.++. ++..+..|+..+.| ||
T Consensus 147 ----~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 147 ----GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADL 221 (257)
T ss_dssp ----SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHH
T ss_pred ----cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHH
Confidence 012345788888764 33443223577889999999999999999888765442 23336778888888 55
Q ss_pred HHHHHHHHHHHh
Q 002241 499 RSCLNTLQFLDK 510 (948)
Q Consensus 499 R~aIn~LQ~~~~ 510 (948)
+.+++.+...+.
T Consensus 222 ~~l~~~a~~~a~ 233 (257)
T 1lv7_A 222 ANLVNEAALFAA 233 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 28
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.70 E-value=2.3e-16 Score=165.24 Aligned_cols=160 Identities=17% Similarity=0.137 Sum_probs=119.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
+.+||+||||+||||+|+++|+++ |+.++.+++++.... +...+ ....++.+|||||+|.+... .
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~vliiDe~~~~~~~-~ 120 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI------STALL-----EGLEQFDLICIDDVDAVAGH-P 120 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS------CGGGG-----TTGGGSSEEEEETGGGGTTC-H
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH------HHHHH-----HhccCCCEEEEeccccccCC-H
Confidence 689999999999999999999986 478888888664321 00011 11245789999999998653 2
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCc-EEEEecCCCc---hhhhhhccce---EEEEecC
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRP-VICICNDLYA---PALRSLRQIA---KVHVFIQ 461 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rP-II~icNDl~~---p~Lr~Lr~~~---~iI~F~~ 461 (948)
.....|+.+++.... ...+ +|++||.... .....+++++ .++.|.+
T Consensus 121 ~~~~~l~~~l~~~~~---------------------------~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~ 173 (242)
T 3bos_A 121 LWEEAIFDLYNRVAE---------------------------QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQP 173 (242)
T ss_dssp HHHHHHHHHHHHHHH---------------------------HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCC
T ss_pred HHHHHHHHHHHHHHH---------------------------cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCC
Confidence 235566666653211 1134 8888885432 1123445455 8999999
Q ss_pred cCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002241 462 PSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 462 p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
|+.+++..+|..++...++.++++++..|++.++||+|.+++.|+.++.
T Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 174 MMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDK 222 (242)
T ss_dssp CCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987754
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.68 E-value=1.3e-15 Score=162.77 Aligned_cols=176 Identities=19% Similarity=0.158 Sum_probs=110.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
.+..+.+||+||||||||++|+++|++++..++.+++++..+. ......+...+.... ...|+||||||||.+..
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR---ARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH---HTCSEEEEEECC-----
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHH---hcCCeEEEEeCcchhhc
Confidence 3445789999999999999999999999999999999876542 222333444333221 34689999999999854
Q ss_pred CCh---------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc--hhhhhhccce
Q 002241 386 DGK---------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA--PALRSLRQIA 454 (948)
Q Consensus 386 ~~~---------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~--p~Lr~Lr~~~ 454 (948)
... .....|..++..-.. . .......+|+++|.... +.+....++.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~ll~~~~~-----~------------------~~~~~~~vi~~tn~~~~ld~~l~~~~R~~ 169 (262)
T 2qz4_A 113 KRSTTMSGFSNTEEEQTLNQLLVEMDG-----M------------------GTTDHVIVLASTNRADILDGALMRPGRLD 169 (262)
T ss_dssp --------------CHHHHHHHHHHHT-----C------------------CTTCCEEEEEEESCGGGGGSGGGSTTSCC
T ss_pred cccccccCccchhHHHHHHHHHHHhhC-----c------------------CCCCCEEEEecCCChhhcCHHHhcCCcCC
Confidence 321 111223333321100 0 00123457788887552 2332212566
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHH-HHHHHHHccC----CHHHHHHHHHHHH
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIA-LTTLAEYTEC----DIRSCLNTLQFLD 509 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~-L~~L~e~s~G----DIR~aIn~LQ~~~ 509 (948)
..+.|..|+.+++..+|+.++...++..+... +..|+..+.| ||+.+++.+...+
T Consensus 170 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHA 229 (262)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999888877664 5778877654 6666666554444
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.67 E-value=9.1e-16 Score=170.65 Aligned_cols=171 Identities=22% Similarity=0.244 Sum_probs=120.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-CCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC-GYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel-G~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
..+.+||+||||||||++|+++|+++ +..++.+++++..+. ......+...+.... ..+|+||||||||.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~---~~~~~vl~iDEid~l~~~ 120 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR---ENKPSIIFIDEIDSLCGS 120 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHH---HTSSEEEEEETTTGGGCC
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH---hcCCcEEEeecHHHhccc
Confidence 34899999999999999999999999 899999999876543 222334444443322 357899999999998653
Q ss_pred Ch----hH----HHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEE
Q 002241 387 GK----GA----VEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKV 456 (948)
Q Consensus 387 ~~----~~----~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~i 456 (948)
.. .. .+.|+..+.... .......||++||... ++.++ |++...
T Consensus 121 ~~~~~~~~~~~~~~~ll~~ld~~~-------------------------~~~~~v~vI~atn~~~~ld~al~--rRf~~~ 173 (322)
T 1xwi_A 121 RSENESEAARRIKTEFLVQMQGVG-------------------------VDNDGILVLGATNIPWVLDSAIR--RRFEKR 173 (322)
T ss_dssp SSSCCTTHHHHHHHHHHHHHHCSS-------------------------SCCTTEEEEEEESCTTTSCHHHH--HTCCEE
T ss_pred cccccchHHHHHHHHHHHHHhccc-------------------------ccCCCEEEEEecCCcccCCHHHH--hhcCeE
Confidence 21 12 222333332100 0012345777888654 34443 356688
Q ss_pred EEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHh
Q 002241 457 HVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDK 510 (948)
Q Consensus 457 I~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~ 510 (948)
+.|+.|+.+.+..+|+.++...++.+++..+..|++.+.| ||+.+++...+.+.
T Consensus 174 i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~ 231 (322)
T 1xwi_A 174 IYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPV 231 (322)
T ss_dssp EECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888899999999998766 77777766655543
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=4.8e-16 Score=168.67 Aligned_cols=220 Identities=18% Similarity=0.217 Sum_probs=148.6
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
.+.++...+.+|++|+|.+...+.|..++..+-.. +..+.
T Consensus 5 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~-------------------------------~~~~~--------- 44 (285)
T 3h4m_A 5 AMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKH-------------------------------PELFE--------- 44 (285)
T ss_dssp CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHC-------------------------------HHHHH---------
T ss_pred cccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhC-------------------------------HHHHH---------
Confidence 34566677789999999999999999988752210 00000
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHH
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIE 354 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~ 354 (948)
..|....+.+||+||||||||++|+++|++++..++.+++++..+. ....
T Consensus 45 ----------------------------~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~ 96 (285)
T 3h4m_A 45 ----------------------------KVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96 (285)
T ss_dssp ----------------------------HHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHH
T ss_pred ----------------------------hcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHH
Confidence 0122334789999999999999999999999999999999876442 2333
Q ss_pred HHHHHHHhhhcccccCCCcEEEecCcccccCC--------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhcccc
Q 002241 355 NKILDVVQMNSVMADSRPKCLVIDEIDGALGD--------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGC 426 (948)
Q Consensus 355 ~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~--------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~ 426 (948)
..+...+.... ...|+||||||||.+... .......|..+++.....
T Consensus 97 ~~~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---------------------- 151 (285)
T 3h4m_A 97 SLVKDIFKLAK---EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF---------------------- 151 (285)
T ss_dssp HHHHHHHHHHH---HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHH---HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC----------------------
Confidence 44444443322 356899999999998542 223345555555432100
Q ss_pred ccccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHH
Q 002241 427 KKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRS 500 (948)
Q Consensus 427 ~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~ 500 (948)
.......||++||... .+.+....++...+.|..|+.+++..+|+..+...++. .+..+..|+..+.| ||+.
T Consensus 152 -~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 152 -DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp -CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHH
T ss_pred -CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHH
Confidence 0012355788888654 23333222577789999999999999999998876654 33346777777665 8999
Q ss_pred HHHHHHHHHhc
Q 002241 501 CLNTLQFLDKK 511 (948)
Q Consensus 501 aIn~LQ~~~~~ 511 (948)
+++.+...+..
T Consensus 230 l~~~a~~~a~~ 240 (285)
T 3h4m_A 230 ICTEAGMNAIR 240 (285)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 32
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.66 E-value=3.6e-16 Score=181.44 Aligned_cols=220 Identities=17% Similarity=0.164 Sum_probs=143.7
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
...|+.++.+.+|+|++|.+...+.|..++.. - ..+ +..+.
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~-p-~~~-----------------------------~~~~~-------- 161 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVIL-P-IKF-----------------------------PHLFT-------- 161 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTH-H-HHC-----------------------------TTTTS--------
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHH-H-hhC-----------------------------HHHhh--------
Confidence 35788999999999999999988888887752 1 000 00000
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCCcceecCCCCCChHH--
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC-GYHVVEVNASDDRSSST-- 352 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel-G~~viEiNaSd~rs~~~-- 352 (948)
.+....+.+||+||||||||++|+++|+++ +..++.+++++..+...
T Consensus 162 ------------------------------~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~ 211 (444)
T 2zan_A 162 ------------------------------GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 211 (444)
T ss_dssp ------------------------------GGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred ------------------------------ccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcch
Confidence 011234799999999999999999999999 89999999987654311
Q ss_pred HHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh----hHHHHHHHHHHhhhccccccccccccCchhhhhhcccccc
Q 002241 353 IENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK----GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428 (948)
Q Consensus 353 ~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~----~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~ 428 (948)
....+...+.... ...|+||||||||.+..... .....++..+..... ... .
T Consensus 212 ~~~~~~~~f~~a~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~----~~~-----------------~ 267 (444)
T 2zan_A 212 SEKLVKNLFQLAR---ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ----GVG-----------------V 267 (444)
T ss_dssp CCCTHHHHHHHHH---HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTT----CSS-----------------C
T ss_pred HHHHHHHHHHHHH---HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHh----Ccc-----------------c
Confidence 1112233332221 35789999999999864321 122222222211100 000 0
Q ss_pred ccCCCcEEEEecCCC--chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHH
Q 002241 429 ASLLRPVICICNDLY--APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCL 502 (948)
Q Consensus 429 ~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aI 502 (948)
......||++||... ++.+ ++++...+.|+.|+.+.+..+|+.++...++.+++..+..|+..+.| ||+.++
T Consensus 268 ~~~~v~vI~atn~~~~ld~al--~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAI--RRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHH--HTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHH--HhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 123466888898754 3333 34566789999999999999999999888888899999999999877 888888
Q ss_pred HHHHHHHh
Q 002241 503 NTLQFLDK 510 (948)
Q Consensus 503 n~LQ~~~~ 510 (948)
+..-+.+.
T Consensus 346 ~~a~~~a~ 353 (444)
T 2zan_A 346 RDALMQPV 353 (444)
T ss_dssp HHHHTHHH
T ss_pred HHHHHHHH
Confidence 77665554
No 33
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=6.2e-16 Score=174.32 Aligned_cols=202 Identities=14% Similarity=0.133 Sum_probs=145.2
Q ss_pred cCCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCC
Q 002241 195 HEQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRW 274 (948)
Q Consensus 195 ~~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~ 274 (948)
....|..+|+| .+++|.+.....+..||+.|...
T Consensus 9 ~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~------------------------------------------- 42 (384)
T 2qby_B 9 PKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKN------------------------------------------- 42 (384)
T ss_dssp TTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTT-------------------------------------------
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcC-------------------------------------------
Confidence 35689999999 78999999999999999875310
Q ss_pred CCCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----------CCCcceec
Q 002241 275 SNGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC-----------GYHVVEVN 343 (948)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel-----------G~~viEiN 343 (948)
...++++|+|||||||||+|+++++++ ++.++++|
T Consensus 43 ----------------------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 43 ----------------------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp ----------------------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred ----------------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 012589999999999999999999988 99999999
Q ss_pred CCCCC-ChHHHHHHHHHHHh----------------h-hcccccCCCcEEEecCcccccCCChhHHHH-HHHHHHhhhcc
Q 002241 344 ASDDR-SSSTIENKILDVVQ----------------M-NSVMADSRPKCLVIDEIDGALGDGKGAVEV-ILKMVSAERKS 404 (948)
Q Consensus 344 aSd~r-s~~~~~~~I~~~~~----------------~-~sv~~~~kp~iLIIDEID~l~~~~~~~~~~-Ll~li~~~~~~ 404 (948)
+++.. +...+...+...+. . .... ...+.+|||||+|.+.... ..+. +..++..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~vlilDEi~~l~~~~--~~~~~l~~l~~~---- 161 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-RNIRAIIYLDEVDTLVKRR--GGDIVLYQLLRS---- 161 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-SSSCEEEEEETTHHHHHST--TSHHHHHHHHTS----
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-ccCCCEEEEECHHHhccCC--CCceeHHHHhcC----
Confidence 88766 55444333332220 0 0001 1223399999999985431 1122 2222211
Q ss_pred ccccccccccCchhhhhhccccccccCCCcEEEEecCCC-----chhhhhhccceEEEEecCcCHHHHHHHHHHHhhh--
Q 002241 405 NTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY-----APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN-- 477 (948)
Q Consensus 405 ~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~-----~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~-- 477 (948)
.....+|++||+.. .+.+. ++++..+.|++++.+++..+|...+..
T Consensus 162 -------------------------~~~~~iI~~t~~~~~~~~l~~~l~--sr~~~~i~l~~l~~~~~~~il~~~~~~~~ 214 (384)
T 2qby_B 162 -------------------------DANISVIMISNDINVRDYMEPRVL--SSLGPSVIFKPYDAEQLKFILSKYAEYGL 214 (384)
T ss_dssp -------------------------SSCEEEEEECSSTTTTTTSCHHHH--HTCCCEEEECCCCHHHHHHHHHHHHHHTS
T ss_pred -------------------------CcceEEEEEECCCchHhhhCHHHH--hcCCCeEEECCCCHHHHHHHHHHHHHhhc
Confidence 02356899999752 22222 345669999999999999999998864
Q ss_pred cCCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHHh
Q 002241 478 ESMKTSSIALTTLAEYTE---CDIRSCLNTLQFLDK 510 (948)
Q Consensus 478 Egi~id~~~L~~L~e~s~---GDIR~aIn~LQ~~~~ 510 (948)
.+..++++++..|++.++ ||+|.+++.|+.+..
T Consensus 215 ~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 215 IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 456789999999999998 999999999988753
No 34
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=4.1e-15 Score=167.57 Aligned_cols=210 Identities=17% Similarity=0.149 Sum_probs=148.6
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..+|..+|+| .+|+|.+...+.|..||+.|-..
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~-------------------------------------------- 39 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRN-------------------------------------------- 39 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHS--------------------------------------------
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcC--------------------------------------------
Confidence 4679999999 67999999999999999964310
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCChH
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRSSS 351 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs~~ 351 (948)
+.+..++++|+||||+||||+++++++++ ++.++++|++...+..
T Consensus 40 -------------------------------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 40 -------------------------------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp -------------------------------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred -------------------------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 01112489999999999999999999998 7889999998877654
Q ss_pred HHHHHHHHHHhhh-----------------cccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhcccccccccccc
Q 002241 352 TIENKILDVVQMN-----------------SVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKE 414 (948)
Q Consensus 352 ~~~~~I~~~~~~~-----------------sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~ 414 (948)
.+...+...+... .+...+++.+|||||+|.+ +...+..|+.++.....
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~----------- 154 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---APDILSTFIRLGQEADK----------- 154 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHH-----------
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc---chHHHHHHHHHHHhCCC-----------
Confidence 4443333222110 0001356889999999998 34666677766642110
Q ss_pred CchhhhhhccccccccCCCcEEEEecCCCch--hhhhhccc-e-EEEEecCcCHHHHHHHHHHHhhh--cCCCCCHHHHH
Q 002241 415 DQPEKISKKKGCKKASLLRPVICICNDLYAP--ALRSLRQI-A-KVHVFIQPSVSRVVSRLKHICNN--ESMKTSSIALT 488 (948)
Q Consensus 415 ~~~~k~~~kk~~~~~~~~rPII~icNDl~~p--~Lr~Lr~~-~-~iI~F~~p~~~~l~~~L~~I~~~--Egi~id~~~L~ 488 (948)
....+..+|++||+.... ....+.++ . ..+.|++++.+++..+|...+.. ....++++++.
T Consensus 155 -------------~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (389)
T 1fnn_A 155 -------------LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQ 221 (389)
T ss_dssp -------------HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHH
T ss_pred -------------CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence 001246789999976211 01112222 2 37999999999999999988865 23468999999
Q ss_pred HHHHHc---------cCCHHHHHHHHHHHHh
Q 002241 489 TLAEYT---------ECDIRSCLNTLQFLDK 510 (948)
Q Consensus 489 ~L~e~s---------~GDIR~aIn~LQ~~~~ 510 (948)
.|++.+ .||+|.+++.|+.++.
T Consensus 222 ~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 222 MIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 999999 8999999999987653
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.63 E-value=2e-15 Score=165.49 Aligned_cols=166 Identities=23% Similarity=0.188 Sum_probs=122.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC-------CCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG-------YHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEID 381 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG-------~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID 381 (948)
..++||+||||||||++|+++|+.++ ..++++++++..+. ......+...+.. ..+.||||||||
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~------~~~~vl~iDEid 140 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR------AMGGVLFIDEAY 140 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHH------HTTSEEEEETGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHh------cCCCEEEEEChh
Confidence 46899999999999999999999873 37899998876442 1122233333332 246799999999
Q ss_pred cccCC------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc-h---hhhhhc
Q 002241 382 GALGD------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA-P---ALRSLR 451 (948)
Q Consensus 382 ~l~~~------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~-p---~Lr~Lr 451 (948)
.+... ....++.|+.+++... ....+|+++|.... . ...+|+
T Consensus 141 ~l~~~~~~~~~~~~~~~~Ll~~l~~~~----------------------------~~~~~i~~~~~~~~~~~~~~~~~l~ 192 (309)
T 3syl_A 141 YLYRPDNERDYGQEAIEILLQVMENNR----------------------------DDLVVILAGYADRMENFFQSNPGFR 192 (309)
T ss_dssp GSCCCC---CCTHHHHHHHHHHHHHCT----------------------------TTCEEEEEECHHHHHHHHHHSTTHH
T ss_pred hhccCCCcccccHHHHHHHHHHHhcCC----------------------------CCEEEEEeCChHHHHHHHhhCHHHH
Confidence 88632 3456677888776421 13457888874321 0 012344
Q ss_pred cce-EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc--------cCCHHHHHHHHHHHHh
Q 002241 452 QIA-KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT--------ECDIRSCLNTLQFLDK 510 (948)
Q Consensus 452 ~~~-~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s--------~GDIR~aIn~LQ~~~~ 510 (948)
+++ ..+.|.+|+.+++..++..++.+.++.++++++..|++.+ .||+|.+.+.++.++.
T Consensus 193 ~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 193 SRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 445 8999999999999999999999999999999999999974 4999999999988764
No 36
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.63 E-value=1.1e-14 Score=162.53 Aligned_cols=214 Identities=19% Similarity=0.171 Sum_probs=138.4
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
.+.|+++|+|++|++.+|++...+.|..+++.+.. .+
T Consensus 12 ~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~---------------------------------------~~---- 48 (334)
T 1in4_A 12 YDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKM---------------------------------------RG---- 48 (334)
T ss_dssp -----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH---------------------------------------HT----
T ss_pred HHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHh---------------------------------------cC----
Confidence 35799999999999999999888888877764210 00
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHH
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIEN 355 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~ 355 (948)
. ...+++|+||||+||||||+++|+++|..+...+++.......+..
T Consensus 49 --------------------------------~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 49 --------------------------------E-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp --------------------------------C-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred --------------------------------C-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 0 1257999999999999999999999998877776655444433322
Q ss_pred HHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcE
Q 002241 356 KILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPV 435 (948)
Q Consensus 356 ~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPI 435 (948)
. .. . ..+..|++|||++.+.. ...+.|+..++..... ... ... ...+.........-+
T Consensus 96 ~----~~--~---~~~~~v~~iDE~~~l~~---~~~e~L~~~~~~~~~~---i~~-~~~------~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 96 I----LT--S---LERGDVLFIDEIHRLNK---AVEELLYSAIEDFQID---IMI-GKG------PSAKSIRIDIQPFTL 153 (334)
T ss_dssp H----HH--H---CCTTCEEEEETGGGCCH---HHHHHHHHHHHTSCCC---C----------------------CCCEE
T ss_pred H----HH--H---ccCCCEEEEcchhhcCH---HHHHHHHHHHHhcccc---eee-ccC------cccccccccCCCeEE
Confidence 1 11 1 23567999999998853 3445555544321100 000 000 000000000111234
Q ss_pred EEEecCCCchhhhhhccce-EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 436 ICICNDLYAPALRSLRQIA-KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 436 I~icNDl~~p~Lr~Lr~~~-~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
|..+|.... ....+++++ ..+.|.+++.+++.++|+.++...++.++++++..|+..+.||.|.+++.|+.+
T Consensus 154 i~at~~~~~-Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~ 226 (334)
T 1in4_A 154 VGATTRSGL-LSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRV 226 (334)
T ss_dssp EEEESCGGG-SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred EEecCCccc-CCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 444554321 113344444 568899999999999999999999999999999999999999999999998765
No 37
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.62 E-value=6.5e-15 Score=171.39 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=57.7
Q ss_pred hhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 002241 447 LRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT-ECDIRSCLNTLQFL 508 (948)
Q Consensus 447 Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s-~GDIR~aIn~LQ~~ 508 (948)
+..++++|..++|.+++.+++.++|+..|..+++.++++++..|+..+ +|++|.+++.|+.+
T Consensus 351 ~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a 413 (456)
T 2c9o_A 351 PLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPA 413 (456)
T ss_dssp CHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHH
T ss_pred ChhHHhhcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 345888999999999999999999999999999999999999999999 99999999999865
No 38
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4.9e-15 Score=163.95 Aligned_cols=170 Identities=11% Similarity=0.084 Sum_probs=118.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCCCCChHHHHHHHHHHHhh------------h----
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASDDRSSSTIENKILDVVQM------------N---- 364 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd~rs~~~~~~~I~~~~~~------------~---- 364 (948)
.++++|+||||||||++++.+++++ ++.++++|+....+...+...|.+.+.. .
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 4789999999999999999999998 5789999998877765554444333310 0
Q ss_pred cc-cccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC
Q 002241 365 SV-MADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY 443 (948)
Q Consensus 365 sv-~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~ 443 (948)
.+ ....++.||+|||||.+. .+..+..|+++... ...+.-||+|+|+..
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~----------------------------~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISS----------------------------KNSKLSIICVGGHNV 174 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHC----------------------------SSCCEEEEEECCSSC
T ss_pred HhhhccCCceEEEEecHHHhh--cchHHHHHHhcccc----------------------------cCCcEEEEEEecCcc
Confidence 00 123567899999999997 33343334333210 012345889999886
Q ss_pred chh--h-hhhccc--eEEEEecCcCHHHHHHHHHHHhhhc--C---------------------------------CCCC
Q 002241 444 APA--L-RSLRQI--AKVHVFIQPSVSRVVSRLKHICNNE--S---------------------------------MKTS 483 (948)
Q Consensus 444 ~p~--L-r~Lr~~--~~iI~F~~p~~~~l~~~L~~I~~~E--g---------------------------------i~id 483 (948)
.+. | ..++++ +.+|.|.+++.+++..+|+.-+... + +.++
T Consensus 175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (318)
T 3te6_A 175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKIN 254 (318)
T ss_dssp CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECC
T ss_pred cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccC
Confidence 542 3 223333 3789999999999999887665542 1 1479
Q ss_pred HHHHHHHHH---HccCCHHHHHHHHHHHHh
Q 002241 484 SIALTTLAE---YTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 484 ~~~L~~L~e---~s~GDIR~aIn~LQ~~~~ 510 (948)
+++|..+++ ...||+|.||+.|..+..
T Consensus 255 ~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~ 284 (318)
T 3te6_A 255 NKITQLIAKNVANVSGSTEKAFKICEAAVE 284 (318)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence 999999999 578999999999987753
No 39
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.61 E-value=1.7e-15 Score=185.49 Aligned_cols=174 Identities=21% Similarity=0.290 Sum_probs=126.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
|...++.+|||||||||||+||+++|+++|..++++++++..++ ...+..++..+.... ...|+||||||||.+.
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~---~~~PsIIfIDEiDal~ 310 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE---KNAPAIIFIDELDAIA 310 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHT---TSCSEEEEEESGGGTC
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHH---HcCCeEEEEehhcccc
Confidence 44566999999999999999999999999999999999876543 455667777776543 4679999999999997
Q ss_pred CCCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 385 GDGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 385 ~~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
.... ..+..|+..+.... ......||++||... +++|+...++.
T Consensus 311 ~~r~~~~~~~~~riv~~LL~~mdg~~--------------------------~~~~V~VIaaTN~~d~LD~ALrR~GRFd 364 (806)
T 3cf2_A 311 PKREKTHGEVERRIVSQLLTLMDGLK--------------------------QRAHVIVMAATNRPNSIDPALRRFGRFD 364 (806)
T ss_dssp CTTTTCCCTTHHHHHHHHHTHHHHCC--------------------------GGGCEEEEEECSSTTTSCTTTTSTTSSC
T ss_pred cccCCCCChHHHHHHHHHHHHHhccc--------------------------ccCCEEEEEecCChhhcCHHHhCCcccc
Confidence 5321 12333444433210 011356888899754 56666555799
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHcc----CCHHHHHHHHHHHHh
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTE----CDIRSCLNTLQFLDK 510 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~----GDIR~aIn~LQ~~~~ 510 (948)
..|.|..|+...+.++|+.++.+..+. ++..+..|+..+. +||...++...+.+.
T Consensus 365 ~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~ 423 (806)
T 3cf2_A 365 REVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAI 423 (806)
T ss_dssp EEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887664442 3445788888765 488888877655553
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.61 E-value=1.1e-15 Score=168.11 Aligned_cols=173 Identities=20% Similarity=0.262 Sum_probs=114.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
+..+++||+||||||||++|+++|++++..++.+++++..+.. .....+...+.... ...|++|||||||.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~---~~~p~il~iDEid~l~~~ 123 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR---QAAPCVLFFDELDSIAKA 123 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHH---HTCSEEEEECSTTHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHH---hcCCeEEEEEChHHHhhc
Confidence 3457899999999999999999999999999999987542211 00112233333221 346899999999987531
Q ss_pred -----------ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccc
Q 002241 387 -----------GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQI 453 (948)
Q Consensus 387 -----------~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~ 453 (948)
....+..|+..+.... ......||++||... ++.+..-.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~lL~~l~~~~--------------------------~~~~v~vi~atn~~~~ld~al~r~gRf 177 (301)
T 3cf0_A 124 RGGNIGDGGGAADRVINQILTEMDGMS--------------------------TKKNVFIIGATNRPDIIDPAILRPGRL 177 (301)
T ss_dssp HTTTTCCSSCSCCHHHHHHHHHHHSSC--------------------------TTSSEEEEEEESCGGGSCGGGGSTTSS
T ss_pred cCCCcCCcchHHHHHHHHHHHHhhccc--------------------------CCCCEEEEEecCCccccChHHhcCCcc
Confidence 1123455666554210 012356888999763 3433222257
Q ss_pred eEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Q 002241 454 AKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT----ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 454 ~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s----~GDIR~aIn~LQ~~~~~ 511 (948)
...+.|+.|+.+++..+|+.++.+.++. .+..+..|+..+ ++||+.+++.+.+.+..
T Consensus 178 ~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 178 DQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 238 (301)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999877653 223345556543 55999988877766543
No 41
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.60 E-value=1.1e-14 Score=169.43 Aligned_cols=171 Identities=23% Similarity=0.240 Sum_probs=114.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~ 387 (948)
.++.+||+||||||||+||+++|.+++..++.+++++.... ......+...+.... ...|+||||||||.+....
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~---~~~p~ILfIDEid~l~~~r 124 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAK---AHAPCIVFIDEIDAVGRHR 124 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHH---HTCSEEEEEETGGGTCCC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHH---hcCCCEEEEechhhhhhhc
Confidence 44789999999999999999999999999999999876542 122233444443322 3579999999999986532
Q ss_pred h-----------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccce
Q 002241 388 K-----------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIA 454 (948)
Q Consensus 388 ~-----------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~ 454 (948)
. ..++.|+..+.... ......||++||... ++.+....++.
T Consensus 125 ~~~~~g~~~~~~~~l~~LL~~ld~~~--------------------------~~~~viVIaaTn~~~~Ld~allR~gRFd 178 (476)
T 2ce7_A 125 GAGLGGGHDEREQTLNQLLVEMDGFD--------------------------SKEGIIVMAATNRPDILDPALLRPGRFD 178 (476)
T ss_dssp --------CHHHHHHHHHHHHHHHSC--------------------------GGGTEEEEEEESCGGGSCGGGGSTTSSC
T ss_pred ccccCcCcHHHHHHHHHHHHHHhccC--------------------------CCCCEEEEEecCChhhhchhhcccCcce
Confidence 1 12333443332100 011345788888763 34443333678
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHh
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDK 510 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~ 510 (948)
..|.|..|+..++..+|+..+.+..+. ++..+..|+..+.| ||+++++.+-..+.
T Consensus 179 ~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 179 KKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAA 237 (476)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred eEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 899999999999999999888765542 22337778888766 66677776655554
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.60 E-value=3.3e-15 Score=167.88 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=120.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---------CCCcceecCCCCCChHHHHHHHHHHHhh-----------------hc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---------GYHVVEVNASDDRSSSTIENKILDVVQM-----------------NS 365 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd~rs~~~~~~~I~~~~~~-----------------~s 365 (948)
++++|+|||||||||+|+.+++++ ++.++++|+....+...+...+...+.. ..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 589999999999999999999998 8899999998877655443333221110 00
Q ss_pred ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccc-cCCCcEEEEecCCCc
Q 002241 366 VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKA-SLLRPVICICNDLYA 444 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~-~~~rPII~icNDl~~ 444 (948)
+...+++.+|||||+|.+.... .....|..++..... .. .....+|+++|+...
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~-~~~~~l~~l~~~~~~------------------------~~~~~~~~~I~~t~~~~~ 179 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRP-GGQDLLYRITRINQE------------------------LGDRVWVSLVGITNSLGF 179 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHST-THHHHHHHHHHGGGC------------------------C-----CEEEEECSCSTT
T ss_pred HhccCCeEEEEEccHhhhcccC-CCChHHHhHhhchhh------------------------cCCCceEEEEEEECCCch
Confidence 1123457899999999985431 133445555442110 00 123568889987521
Q ss_pred --hhhhhhccce--EEEEecCcCHHHHHHHHHHHhhh--cCCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 002241 445 --PALRSLRQIA--KVHVFIQPSVSRVVSRLKHICNN--ESMKTSSIALTTLAEYTE---CDIRSCLNTLQFLD 509 (948)
Q Consensus 445 --p~Lr~Lr~~~--~iI~F~~p~~~~l~~~L~~I~~~--Egi~id~~~L~~L~e~s~---GDIR~aIn~LQ~~~ 509 (948)
.....+++++ ..+.|++++.+++..+|...+.. .+..++++++..|++.++ ||+|.+++.|+.+.
T Consensus 180 ~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 180 VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1112233334 58999999999999999998875 567889999999999998 99999999998775
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=1.5e-14 Score=160.21 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=117.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhc---cc-ccCCCcEEEecCccccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNS---VM-ADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~s---v~-~~~kp~iLIIDEID~l~ 384 (948)
+.++|+|||||||||||+++|+++ +..++++++++.. ..+...+.... +. ...++.+|||||||.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA------QAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH------HHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH------HHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence 679999999999999999999998 8999999986531 11111111100 00 11347899999999986
Q ss_pred CCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc---hhhhhhccce---EEEE
Q 002241 385 GDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA---PALRSLRQIA---KVHV 458 (948)
Q Consensus 385 ~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~---p~Lr~Lr~~~---~iI~ 458 (948)
.. ......|+.+++.... ...+||++|+.... .....|++++ .++.
T Consensus 112 ~~-~~~~~~l~~~l~~~~~---------------------------~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 112 GK-ERTQIEFFHIFNTLYL---------------------------LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp TC-HHHHHHHHHHHHHHHH---------------------------TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred CC-hHHHHHHHHHHHHHHH---------------------------CCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 43 2345566666653211 12457777774322 1112333344 7899
Q ss_pred ecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 002241 459 FIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 459 F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~ 511 (948)
|.+ +.+++..+|...+...++.++++++..|+..+ ||+|.+.+.|+.++..
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 999 99999999999999999999999999999999 9999999999887654
No 44
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.58 E-value=8.2e-15 Score=163.63 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=121.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcceecCC---CCCChHHHHHHHHHHHhh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY------------------------HVVEVNAS---DDRSSSTIENKILDVVQM 363 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~------------------------~viEiNaS---d~rs~~~~~~~I~~~~~~ 363 (948)
...+||+||||+|||++|+++|+.+.. +++++++. ...+.+.+++.+..+ ..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~-~~ 102 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKL-NE 102 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHT-TS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHH-hh
Confidence 468999999999999999999998753 45677764 345555565544332 22
Q ss_pred hcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC
Q 002241 364 NSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY 443 (948)
Q Consensus 364 ~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~ 443 (948)
.. ..++++|+||||+|.+.. .+.++|++.++... ....+|++||+..
T Consensus 103 ~~--~~~~~kvviIdead~l~~---~a~naLLk~lEep~----------------------------~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 103 HA--RLGGAKVVWVTDAALLTD---AAANALLKTLEEPP----------------------------AETWFFLATREPE 149 (334)
T ss_dssp CC--TTSSCEEEEESCGGGBCH---HHHHHHHHHHTSCC----------------------------TTEEEEEEESCGG
T ss_pred cc--ccCCcEEEEECchhhcCH---HHHHHHHHHhcCCC----------------------------CCeEEEEEeCChH
Confidence 21 135689999999999853 67788998886421 1245888898864
Q ss_pred chhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Q 002241 444 APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFL 508 (948)
Q Consensus 444 ~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~ 508 (948)
..+..++++|..+.|.+++.+++.++|...+ .++++++..|++.++||+|.+++.|+..
T Consensus 150 -~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 150 -RLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGD 208 (334)
T ss_dssp -GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSH
T ss_pred -hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccc
Confidence 3566788899999999999999999998776 5789999999999999999999988744
No 45
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.3e-14 Score=160.17 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=116.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh------CCCcceecCCC-CCChHHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASD-DRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel------G~~viEiNaSd-~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
.++||+||||+||||+|+++|+.+ ..+++++++++ ..+.+.+++.+..+ ..... .++.+|+||||+|.+.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~-~~~p~--~~~~kvviIdead~lt 95 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFL-NYSPE--LYTRKYVIVHDCERMT 95 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHH-TSCCS--SSSSEEEEETTGGGBC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHH-hhccc--cCCceEEEeccHHHhC
Confidence 689999999999999999999975 45889999986 67777777755443 33322 3468999999999985
Q ss_pred CCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcCH
Q 002241 385 GDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPSV 464 (948)
Q Consensus 385 ~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~~ 464 (948)
..+.++|++.++... ....+|++||+.. ..+.+++++ ++.|.+++.
T Consensus 96 ---~~a~naLLk~LEep~----------------------------~~t~fIl~t~~~~-kl~~tI~SR--~~~f~~l~~ 141 (305)
T 2gno_A 96 ---QQAANAFLKALEEPP----------------------------EYAVIVLNTRRWH-YLLPTIKSR--VFRVVVNVP 141 (305)
T ss_dssp ---HHHHHHTHHHHHSCC----------------------------TTEEEEEEESCGG-GSCHHHHTT--SEEEECCCC
T ss_pred ---HHHHHHHHHHHhCCC----------------------------CCeEEEEEECChH-hChHHHHce--eEeCCCCCH
Confidence 367889999997432 1245888888764 355677777 899999999
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Q 002241 465 SRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQF 507 (948)
Q Consensus 465 ~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~ 507 (948)
+++.++|..++ + ++++++ ..+.||+|.++|.|+.
T Consensus 142 ~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 142 KEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp HHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence 99999999988 3 556655 4469999999999873
No 46
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.56 E-value=1.2e-14 Score=170.34 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=119.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~ 387 (948)
..+.+||+||||||||++|+++|++++..++.+|+++..+. ......+...+.... ..+|++|||||||.+....
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~---~~~p~iLfLDEId~l~~~~ 313 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE---KNAPAIIFIDELDAIAPKR 313 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHH---HTCSEEEEEESHHHHCBCT
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHH---hcCCcEEEecchhhhcccc
Confidence 45789999999999999999999999999999998765432 233444555444332 4568999999999987642
Q ss_pred h--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC--CchhhhhhccceEEE
Q 002241 388 K--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL--YAPALRSLRQIAKVH 457 (948)
Q Consensus 388 ~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl--~~p~Lr~Lr~~~~iI 457 (948)
. ..+..|+.+++... ......||++||.. ..+.++...++...+
T Consensus 314 ~~~~~~~~~~~~~~LL~~ld~~~--------------------------~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i 367 (489)
T 3hu3_A 314 EKTHGEVERRIVSQLLTLMDGLK--------------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREV 367 (489)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHSC--------------------------TTSCEEEEEEESCGGGBCGGGGSTTSSCEEE
T ss_pred ccccchHHHHHHHHHHHHhhccc--------------------------cCCceEEEEecCCccccCHHHhCCCcCceEE
Confidence 1 34455666665211 01234577888876 455665545688889
Q ss_pred EecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHh
Q 002241 458 VFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDK 510 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~ 510 (948)
.|..|+.+++..+|+..+....+. .+..+..|+..+.| ||+.+++...+.+.
T Consensus 368 ~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~ 423 (489)
T 3hu3_A 368 DIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAI 423 (489)
T ss_dssp ECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999988776554 33356778887766 55555554444443
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.54 E-value=1.5e-14 Score=167.60 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=121.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChHHHHHHHHHHHhhhc---cc-ccC-CCcEEEecCc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSSTIENKILDVVQMNS---VM-ADS-RPKCLVIDEI 380 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~~~~~~I~~~~~~~s---v~-~~~-kp~iLIIDEI 380 (948)
.+.++|+||||+||||||+++|+++ +..++.+++++. ...+...+.... +. ... ++.|||||||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF------LNDLVDSMKEGKLNEFREKYRKKVDILLIDDV 203 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH------HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH------HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence 4689999999999999999999988 889999988653 222222222111 00 123 6899999999
Q ss_pred ccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch---hhhhhccce---
Q 002241 381 DGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP---ALRSLRQIA--- 454 (948)
Q Consensus 381 D~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p---~Lr~Lr~~~--- 454 (948)
|.+... ....+.|+.+++.... ....||++|+..... ....+++++
T Consensus 204 ~~l~~~-~~~q~~l~~~l~~l~~---------------------------~~~~iIitt~~~~~~l~~l~~~L~sR~~~g 255 (440)
T 2z4s_A 204 QFLIGK-TGVQTELFHTFNELHD---------------------------SGKQIVICSDREPQKLSEFQDRLVSRFQMG 255 (440)
T ss_dssp GGGSSC-HHHHHHHHHHHHHHHT---------------------------TTCEEEEEESSCGGGCSSCCHHHHHHHHSS
T ss_pred ccccCC-hHHHHHHHHHHHHHHH---------------------------CCCeEEEEECCCHHHHHHHHHHHHhhccCC
Confidence 998652 2455667777654211 124577888764221 113344433
Q ss_pred EEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDK 510 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~ 510 (948)
.++.|.+|+.+++..+|...+..+++.++++++..|+..+.||+|.+++.|+.+..
T Consensus 256 ~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~ 311 (440)
T 2z4s_A 256 LVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLV 311 (440)
T ss_dssp BCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999987754
No 48
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.53 E-value=7e-14 Score=152.65 Aligned_cols=180 Identities=21% Similarity=0.209 Sum_probs=116.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh----HHHHHHHHHHHhhh--cccccCCCcEEEecCcccccC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS----STIENKILDVVQMN--SVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~----~~~~~~I~~~~~~~--sv~~~~kp~iLIIDEID~l~~ 385 (948)
+.+||+||||||||++|+++|+.++..++.+++++.... ......+...+... .+.....+.||||||||.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK 130 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc
Confidence 689999999999999999999999999999999876541 11112233332211 111112368999999999975
Q ss_pred CC---------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC--C-chhhhhhccc
Q 002241 386 DG---------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL--Y-APALRSLRQI 453 (948)
Q Consensus 386 ~~---------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl--~-~p~Lr~Lr~~ 453 (948)
.. .+..+.|+.+++........ + ........+|+++|.. . ......++++
T Consensus 131 ~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~-----------------~-~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R 192 (310)
T 1ofh_A 131 KGEYSGADVSREGVQRDLLPLVEGSTVSTKH-----------------G-MVKTDHILFIASGAFQVARPSDLIPELQGR 192 (310)
T ss_dssp CSSCCSSHHHHHHHHHHHHHHHHCCEEEETT-----------------E-EEECTTCEEEEEECCSSSCGGGSCHHHHHT
T ss_pred cccccccchhHHHHHHHHHHHhcCCeEeccc-----------------c-cccCCcEEEEEcCCcccCCcccCCHHHHhh
Confidence 43 12356777777642110000 0 0112234456654311 1 1111223444
Q ss_pred e-EEEEecCcCHHHHHHHHH-----------HHhhhcC--CCCCHHHHHHHHHHc--------cCCHHHHHHHHHHHH
Q 002241 454 A-KVHVFIQPSVSRVVSRLK-----------HICNNES--MKTSSIALTTLAEYT--------ECDIRSCLNTLQFLD 509 (948)
Q Consensus 454 ~-~iI~F~~p~~~~l~~~L~-----------~I~~~Eg--i~id~~~L~~L~e~s--------~GDIR~aIn~LQ~~~ 509 (948)
+ ..+.|++|+.+++..+|. ..+..++ +.++++++..|++.+ .||+|.+.+.++.+.
T Consensus 193 ~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 193 LPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp CCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred CCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 4 679999999999988887 2333455 468999999999998 799999999998765
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.51 E-value=2e-14 Score=167.89 Aligned_cols=192 Identities=15% Similarity=0.155 Sum_probs=129.9
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..-|+++|+|.++++++|.+...+.+..+|...
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~----------------------------------------------- 199 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR----------------------------------------------- 199 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS-----------------------------------------------
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhcc-----------------------------------------------
Confidence 568999999999999999999999999888731
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCC
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNAS 345 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaS 345 (948)
..+++||+||||||||++|+++|+.+ |..++.++++
T Consensus 200 ----------------------------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 200 ----------------------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp ----------------------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred ----------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 01468999999999999999999996 8889999987
Q ss_pred CCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccc
Q 002241 346 DDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425 (948)
Q Consensus 346 d~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~ 425 (948)
......+...+...+.... ...+.||||| + ...+.+.|+..+.
T Consensus 246 -~~~~g~~e~~~~~~~~~~~---~~~~~iLfiD---~----~~~a~~~L~~~L~-------------------------- 288 (468)
T 3pxg_A 246 -TKYRGEFEDRLKKVMDEIR---QAGNIILFID---A----AIDASNILKPSLA-------------------------- 288 (468)
T ss_dssp --------CTTHHHHHHHHH---TCCCCEEEEC---C------------CCCTT--------------------------
T ss_pred -ccccchHHHHHHHHHHHHH---hcCCeEEEEe---C----chhHHHHHHHhhc--------------------------
Confidence 2112223333344333221 2467899999 1 1122233322221
Q ss_pred cccccCCCcEEEEecCCCc----hhhhhhccceEEEEecCcCHHHHHHHHHHHhhh----cCCCCCHHHHHHHHHHccCC
Q 002241 426 CKKASLLRPVICICNDLYA----PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN----ESMKTSSIALTTLAEYTECD 497 (948)
Q Consensus 426 ~~~~~~~rPII~icNDl~~----p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~----Egi~id~~~L~~L~e~s~GD 497 (948)
.....+|++||.... .....+++++..|.|..|+.+++..+|+.++.+ +++.++++++..++..+.+.
T Consensus 289 ----~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 289 ----RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (468)
T ss_dssp ----SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred ----CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 112457777775431 122345567778999999999999999988877 78999999999999987655
Q ss_pred HH------HHHHHHHHHH
Q 002241 498 IR------SCLNTLQFLD 509 (948)
Q Consensus 498 IR------~aIn~LQ~~~ 509 (948)
++ .+|..|.-.+
T Consensus 365 ~~~~~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 365 ISDRFLPDKAIDLIDEAG 382 (468)
T ss_dssp SCCSCTTHHHHHHHHHHH
T ss_pred hccCcCCcHHHHHHHHHH
Confidence 53 5777666554
No 50
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=1e-13 Score=155.44 Aligned_cols=166 Identities=15% Similarity=0.159 Sum_probs=115.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh------CCCcceecCCCCCChHH----------------------HHHHHHHHHhh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC------GYHVVEVNASDDRSSST----------------------IENKILDVVQM 363 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel------G~~viEiNaSd~rs~~~----------------------~~~~I~~~~~~ 363 (948)
.+++|+||+|+||||||+.+++++ ++.++.+++....+... +...+...+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~- 124 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR- 124 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh-
Confidence 579999999999999999999988 89999999764433221 1222222221
Q ss_pred hcccccCCCcEEEecCcccccCCC-hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC
Q 002241 364 NSVMADSRPKCLVIDEIDGALGDG-KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL 442 (948)
Q Consensus 364 ~sv~~~~kp~iLIIDEID~l~~~~-~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl 442 (948)
..+.+.+|||||+|.+.... ...+..|+..+... ...+..+|+++|+.
T Consensus 125 ----~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~---------------------------~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 125 ----DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV---------------------------NKSKISFIGITNDV 173 (386)
T ss_dssp ----TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC---------------------------CC--EEEEEEESCG
T ss_pred ----ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc---------------------------CCCeEEEEEEECCC
Confidence 13458999999999986432 45555666555311 01134588888865
Q ss_pred Cc--hhhhhhccce--EEEEecCcCHHHHHHHHHHHhhhc--CCCCCHHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 002241 443 YA--PALRSLRQIA--KVHVFIQPSVSRVVSRLKHICNNE--SMKTSSIALTTLAEYTE---CDIRSCLNTLQFLD 509 (948)
Q Consensus 443 ~~--p~Lr~Lr~~~--~iI~F~~p~~~~l~~~L~~I~~~E--gi~id~~~L~~L~e~s~---GDIR~aIn~LQ~~~ 509 (948)
.. .....+++++ ..+.|.+++.+++..+|...+... ...++++++..|++.++ ||+|.+++.++.++
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 31 1111122223 689999999999999999877642 35789999999999988 99999999887664
No 51
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.51 E-value=8.4e-14 Score=150.42 Aligned_cols=169 Identities=16% Similarity=0.195 Sum_probs=109.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh---HHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS---STIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~---~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
+..+.+||+||||||||++|+++|+++++.++.+++++...+ ......+...+.... ..++.+|||||||.+.+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY---KSQLSCVVVDDIERLLD 138 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHH---TSSEEEEEECCHHHHTT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHH---hcCCcEEEEEChhhhhc
Confidence 345799999999999999999999999999999998764332 122233444333221 24689999999999853
Q ss_pred CC-------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchh-hhhhccceEEE
Q 002241 386 DG-------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPA-LRSLRQIAKVH 457 (948)
Q Consensus 386 ~~-------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~-Lr~Lr~~~~iI 457 (948)
.. ...++.|..+++... .......||++||...... +.-..+++..+
T Consensus 139 ~~~~~~~~~~~~l~~L~~~~~~~~-------------------------~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i 193 (272)
T 1d2n_A 139 YVPIGPRFSNLVLQALLVLLKKAP-------------------------PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTI 193 (272)
T ss_dssp CBTTTTBCCHHHHHHHHHHTTCCC-------------------------STTCEEEEEEEESCHHHHHHTTCTTTSSEEE
T ss_pred cCCCChhHHHHHHHHHHHHhcCcc-------------------------CCCCCEEEEEecCChhhcchhhhhcccceEE
Confidence 21 122333333332100 0011233677777653211 11234568889
Q ss_pred EecCcCH-HHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC-----CHHHHHHHHHHHHh
Q 002241 458 VFIQPSV-SRVVSRLKHICNNESMKTSSIALTTLAEYTEC-----DIRSCLNTLQFLDK 510 (948)
Q Consensus 458 ~F~~p~~-~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G-----DIR~aIn~LQ~~~~ 510 (948)
.|++++. +++..++.. .+ .++++.+..|++.+.| |+|.++|.++.+..
T Consensus 194 ~~p~l~~r~~i~~i~~~----~~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 194 HVPNIATGEQLLEALEL----LG-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp ECCCEEEHHHHHHHHHH----HT-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred cCCCccHHHHHHHHHHh----cC-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 9977765 555555443 22 4689999999999988 99999999998754
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.50 E-value=1.3e-15 Score=163.77 Aligned_cols=168 Identities=22% Similarity=0.269 Sum_probs=106.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh------HHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS------STIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~------~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
.+.+||+||||||||++|+++|++++..++.+++++.... ..+...+..+. ...|++|||||||.+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~-------~~~~~vl~iDEid~l~ 116 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAK-------KQAPSIIFIDEIDAIG 116 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHH-------HSCSCEEEESCGGGTT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHH-------hcCCeEEEEeChhhhc
Confidence 4679999999999999999999999999999998765331 11111111111 2468999999999986
Q ss_pred CCChh------------HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhh
Q 002241 385 GDGKG------------AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSL 450 (948)
Q Consensus 385 ~~~~~------------~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~L 450 (948)
..... .+..|+..+.. .........||+++|... .+.+...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~-------------------------~~~~~~~v~vi~ttn~~~~ld~~l~r~ 171 (268)
T 2r62_A 117 KSRAAGGVVSGNDEREQTLNQLLAEMDG-------------------------FGSENAPVIVLAATNRPEILDPALMRP 171 (268)
T ss_dssp C----------CCCSCSSTTTTTTTTTC-------------------------SSCSCSCCEEEECBSCCTTSCGGGGSS
T ss_pred ccccccccCCCchhHHHHHHHHHHHhhC-------------------------cccCCCCEEEEEecCCchhcCHhHcCC
Confidence 53211 01111111100 000112245777777654 3344332
Q ss_pred ccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccC----CHHHHHHHHHHHHhc
Q 002241 451 RQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTEC----DIRSCLNTLQFLDKK 511 (948)
Q Consensus 451 r~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~G----DIR~aIn~LQ~~~~~ 511 (948)
.++...+.|..|+.+++..+|+..+....+. ++..+..|+..+.| ||+.+++.+..++..
T Consensus 172 ~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 172 GRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp SSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred CCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999888765442 22335666666555 888888887776643
No 53
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.50 E-value=1.5e-13 Score=161.01 Aligned_cols=174 Identities=22% Similarity=0.241 Sum_probs=111.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~ 387 (948)
.++.+||+|||||||||||++||.+++..++.+++++.... ......+...++... ...|+++||||||.+....
T Consensus 63 ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~---~~~p~il~IDEId~l~~~r 139 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKR 139 (499)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS---SSSSCEEEEECGGGTCCCS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH---hcCCCEEEEehHHHHHHhh
Confidence 34679999999999999999999999999999999876432 233445555554322 2458999999999875421
Q ss_pred h--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEE
Q 002241 388 K--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVH 457 (948)
Q Consensus 388 ~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI 457 (948)
. .....+..++..-. .. .......+|+++|... ++.+....++...|
T Consensus 140 ~~~~~~~~~e~~~~l~~LL~~Ld-----g~------------------~~~~~viviAatn~p~~LD~aLlr~gRfdr~i 196 (499)
T 2dhr_A 140 GSGVGGGNDEREQTLNQLLVEMD-----GF------------------EKDTAIVVMAATNRPDILDPALLRPGRFDRQI 196 (499)
T ss_dssp SSSTTTSSHHHHHHHHHHHHHGG-----GC------------------CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEE
T ss_pred ccCcCCCcHHHHHHHHHHHHHhc-----cc------------------ccCccEEEEEecCChhhcCcccccccccceEE
Confidence 1 11122222222100 00 0011233555666542 34443333577899
Q ss_pred EecCcCHHHHHHHHHHHhhhcCCCCCH-HHHHHHHHHccC----CHHHHHHHHHHHHhc
Q 002241 458 VFIQPSVSRVVSRLKHICNNESMKTSS-IALTTLAEYTEC----DIRSCLNTLQFLDKK 511 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~Egi~id~-~~L~~L~e~s~G----DIR~aIn~LQ~~~~~ 511 (948)
.|..|+...+..+|+..+.. +.+++ ..+..|+..+.| ||+++++.+-..+..
T Consensus 197 ~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 197 AIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp ECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999877654 44443 347888888766 666777766555543
No 54
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.50 E-value=3.7e-14 Score=142.32 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=110.5
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
..|+++|+|.+|.+++|.+...+.+..|+...
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~------------------------------------------------ 41 (195)
T 1jbk_A 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRR------------------------------------------------ 41 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSS------------------------------------------------
T ss_pred HHHHHHHhhccccccccchHHHHHHHHHHhcC------------------------------------------------
Confidence 46999999999999999999998888887620
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCCC
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNASD 346 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaSd 346 (948)
..+.+||+||||+|||++|+.+|+++ +..++.+++++
T Consensus 42 ---------------------------------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 42 ---------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp ---------------------------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred ---------------------------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 12579999999999999999999986 77888888754
Q ss_pred CC----ChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC-----hhHHHHHHHHHHhhhccccccccccccCch
Q 002241 347 DR----SSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG-----KGAVEVILKMVSAERKSNTAKENVAKEDQP 417 (948)
Q Consensus 347 ~r----s~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~-----~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~ 417 (948)
.. ........+...+.... ...++.||||||+|.+.... ....+.|..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~----------------- 149 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLA--KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR----------------- 149 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHH--HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-----------------
T ss_pred HhccCCccccHHHHHHHHHHHHh--hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-----------------
Confidence 32 22333444444443211 23567899999999986432 2223444443321
Q ss_pred hhhhhccccccccCCCcEEEEecCCCc----hhhhhhccceEEEEecCcCHHHHHHHH
Q 002241 418 EKISKKKGCKKASLLRPVICICNDLYA----PALRSLRQIAKVHVFIQPSVSRVVSRL 471 (948)
Q Consensus 418 ~k~~~kk~~~~~~~~rPII~icNDl~~----p~Lr~Lr~~~~iI~F~~p~~~~l~~~L 471 (948)
....+|+++|.... .....+++++..+.|..|+.+++.++|
T Consensus 150 -------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -------------GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -------------TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred -------------CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 13568888886431 011345556778999999999887654
No 55
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.50 E-value=1.8e-13 Score=150.14 Aligned_cols=174 Identities=14% Similarity=0.177 Sum_probs=106.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhc-ccccCCCcEEEecCcccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNS-VMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~s-v~~~~kp~iLIIDEID~l 383 (948)
+...++++||+||||||||++|+++|+++|..++.+++++..+. ......+...+.... ......|+||+|||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 34456899999999999999999999999999999998875443 223334444443221 112457899999999998
Q ss_pred cCCCh----------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhc
Q 002241 384 LGDGK----------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLR 451 (948)
Q Consensus 384 ~~~~~----------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr 451 (948)
.+... .....|+.+++.......... .......+.+||++||+.. ++.+....
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~---------------~~~~~~~~v~vI~ttN~~~~ld~al~R~~ 176 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM---------------YNKQENARVPIIVTGNDFSTLYAPLIRDG 176 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC--------------------------CCCCCCEEEECSSCCC--CHHHHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccc---------------cccccCCCcEEEEecCCcccCCHHHhCCC
Confidence 75221 234667777652110000000 0001234578999999864 33443222
Q ss_pred cceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH-ccCCHH
Q 002241 452 QIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY-TECDIR 499 (948)
Q Consensus 452 ~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~-s~GDIR 499 (948)
++...+. .|+.+++..+++.++...++ +...+..++.. ++.||.
T Consensus 177 R~d~~i~--~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 177 RMEKFYW--APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HEEEEEE--CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCHH
T ss_pred CCceeEe--CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccHH
Confidence 3444444 47999999999998887655 56677777765 455664
No 56
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.48 E-value=1.1e-13 Score=153.77 Aligned_cols=210 Identities=11% Similarity=0.095 Sum_probs=137.9
Q ss_pred CcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCCC
Q 002241 197 QLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWSN 276 (948)
Q Consensus 197 ~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~~ 276 (948)
..|+++|+|..+.+++|++...+.++.++..
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~------------------------------------------------- 45 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICT------------------------------------------------- 45 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHc-------------------------------------------------
Confidence 3599999999999999999988888776652
Q ss_pred CCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHH
Q 002241 277 GNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENK 356 (948)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~ 356 (948)
.+++||+||||||||++|+++|+.++..++.++++.......+...
T Consensus 46 ----------------------------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 46 ----------------------------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp ----------------------------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ----------------------------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 0369999999999999999999999999999987644433222110
Q ss_pred HHHHHhhhcc-c--ccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCC
Q 002241 357 ILDVVQMNSV-M--ADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLR 433 (948)
Q Consensus 357 I~~~~~~~sv-~--~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~r 433 (948)
..-....... . +.-...||||||||.+. ......|+..++....... ... .......
T Consensus 92 ~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~---~~~~~~Ll~~l~~~~~~~~-g~~----------------~~~~~~~ 151 (331)
T 2r44_A 92 MIYNQHKGNFEVKKGPVFSNFILADEVNRSP---AKVQSALLECMQEKQVTIG-DTT----------------YPLDNPF 151 (331)
T ss_dssp EEEETTTTEEEEEECTTCSSEEEEETGGGSC---HHHHHHHHHHHHHSEEEET-TEE----------------EECCSSC
T ss_pred eeecCCCCceEeccCcccccEEEEEccccCC---HHHHHHHHHHHhcCceeeC-CEE----------------EECCCCE
Confidence 0000000000 0 01113799999999874 3567788888875432110 000 0012234
Q ss_pred cEEEEecCCCc----hhhhhhcc-ceEEEEecCcCHHHHHHHHHHHhhhc----------------------CCCCCHHH
Q 002241 434 PVICICNDLYA----PALRSLRQ-IAKVHVFIQPSVSRVVSRLKHICNNE----------------------SMKTSSIA 486 (948)
Q Consensus 434 PII~icNDl~~----p~Lr~Lr~-~~~iI~F~~p~~~~l~~~L~~I~~~E----------------------gi~id~~~ 486 (948)
-+|+++|.... .....+++ +...+.|..|+.+++.++|+..+..+ ++.+++++
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 45666673220 01123333 44569999999999999998887653 67889999
Q ss_pred HHHHHHHc-----cC---------------CHHHHHHHHHHHH
Q 002241 487 LTTLAEYT-----EC---------------DIRSCLNTLQFLD 509 (948)
Q Consensus 487 L~~L~e~s-----~G---------------DIR~aIn~LQ~~~ 509 (948)
+..|++.+ .+ +.|.+++.+..+.
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~ 274 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAK 274 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHH
Confidence 99888754 23 5899888777653
No 57
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.47 E-value=3e-14 Score=174.48 Aligned_cols=179 Identities=21% Similarity=0.274 Sum_probs=109.1
Q ss_pred cccCCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCc
Q 002241 303 TRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEI 380 (948)
Q Consensus 303 ~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEI 380 (948)
+...|...++.+|||||||||||.+|+++|.++|.+++.+++++..++. ..+..|+..+.... ...|+|||||||
T Consensus 503 f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar---~~~P~IifiDEi 579 (806)
T 3cf2_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR---QAAPCVLFFDEL 579 (806)
T ss_dssp GSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHH---TTCSEEEECSCG
T ss_pred HHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHH---HcCCceeechhh
Confidence 3456777889999999999999999999999999999999998765542 33455666665543 457999999999
Q ss_pred ccccCCCh-------h----HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC--CCchhh
Q 002241 381 DGALGDGK-------G----AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND--LYAPAL 447 (948)
Q Consensus 381 D~l~~~~~-------~----~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND--l~~p~L 447 (948)
|.+...+. + .++.|+..+.... .. ...-||+++|. ..++++
T Consensus 580 Dsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-------------------~~-------~~V~vi~aTN~p~~lD~Al 633 (806)
T 3cf2_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMS-------------------TK-------KNVFIIGATNRPDIIDPAI 633 (806)
T ss_dssp GGCC--------------CHHHHHHHHHHHSSC-------------------SS-------SSEEEECC-CCSSSSCHHH
T ss_pred hHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-------------------CC-------CCEEEEEeCCCchhCCHhH
Confidence 99875321 1 2333444333110 00 01223344553 445666
Q ss_pred hhhccceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH----ccCCHHHHHHHHHHHHhc
Q 002241 448 RSLRQIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY----TECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 448 r~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~----s~GDIR~aIn~LQ~~~~~ 511 (948)
..-.++...|+|+.|+.+.+.++|+.++.+..+. ++..+..|++. ++.||..+++...+.+.+
T Consensus 634 lRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r 700 (806)
T 3cf2_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp HSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHHHHHHH
T ss_pred cCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 4333789999999999999999998888765543 23346666664 567999999988777654
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.44 E-value=1.8e-13 Score=137.10 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=103.4
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..-|+++|+|.+|.+++|.+...+.+..|+...
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~----------------------------------------------- 41 (187)
T 2p65_A 9 SRDLTALARAGKLDPVIGRDTEIRRAIQILSRR----------------------------------------------- 41 (187)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSS-----------------------------------------------
T ss_pred HHHHHHHHhccccchhhcchHHHHHHHHHHhCC-----------------------------------------------
Confidence 456999999999999999999888888877520
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCC
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNAS 345 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaS 345 (948)
..+.+||+||||||||++|+.+|+++ ++.++.++++
T Consensus 42 ----------------------------------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 42 ----------------------------------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp ----------------------------------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred ----------------------------------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 11578999999999999999999997 7788888765
Q ss_pred CCC----ChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC------hhHHHHHHHHHHhhhccccccccccccC
Q 002241 346 DDR----SSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG------KGAVEVILKMVSAERKSNTAKENVAKED 415 (948)
Q Consensus 346 d~r----s~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~------~~~~~~Ll~li~~~~~~~~~~~~~~~~~ 415 (948)
... ........+...+.... ....+.+|||||+|.+.... ....+.|..++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--------------- 150 (187)
T 2p65_A 88 SLIAGAKYRGDFEERLKSILKEVQ--DAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--------------- 150 (187)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHH--HTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------------
T ss_pred HhhcCCCchhHHHHHHHHHHHHHH--hcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc---------------
Confidence 432 22233333433332211 13467899999999986321 2344444444431
Q ss_pred chhhhhhccccccccCCCcEEEEecCCCc----hhhhhhccceEEEEecCcC
Q 002241 416 QPEKISKKKGCKKASLLRPVICICNDLYA----PALRSLRQIAKVHVFIQPS 463 (948)
Q Consensus 416 ~~~k~~~kk~~~~~~~~rPII~icNDl~~----p~Lr~Lr~~~~iI~F~~p~ 463 (948)
....+|+++|.... .....+++++..+.+..|+
T Consensus 151 ---------------~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 151 ---------------GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp ---------------TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred ---------------CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 13568888885421 1123455567778888774
No 59
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.44 E-value=8.4e-13 Score=140.97 Aligned_cols=169 Identities=23% Similarity=0.247 Sum_probs=107.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC--hHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS--SSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs--~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
++.++|+||||||||||++++|.+++..++.++..+... .......+...++... ...|.+++|||||.+.....
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~~Deid~l~~~~~ 125 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRG 125 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHT---TSSSEEEEEETHHHHHC---
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHH---hcCCeEEEehhhhhhhcccC
Confidence 356999999999999999999999998888888754311 1223344555555432 24578999999998753211
Q ss_pred --------h---HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceE
Q 002241 389 --------G---AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAK 455 (948)
Q Consensus 389 --------~---~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~ 455 (948)
. .++.++..+.... .....-+++++|... ++.+....++..
T Consensus 126 ~~~~~~~~~~~~~~~~ll~~l~g~~--------------------------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~ 179 (254)
T 1ixz_A 126 SGVGGGNDEREQTLNQLLVEMDGFE--------------------------KDTAIVVMAATNRPDILDPALLRPGRFDR 179 (254)
T ss_dssp ------CHHHHHHHHHHHHHHHTCC--------------------------TTCCEEEEEEESCGGGSCGGGGSTTSSCE
T ss_pred ccccccchHHHHHHHHHHHHHhCCC--------------------------CCCCEEEEEccCCchhCCHHHcCCCcCCe
Confidence 1 1222222222100 000123455666543 444443336888
Q ss_pred EEEecCcCHHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHccC----CHHHHHHHHHHHHh
Q 002241 456 VHVFIQPSVSRVVSRLKHICNNESMKTSSI-ALTTLAEYTEC----DIRSCLNTLQFLDK 510 (948)
Q Consensus 456 iI~F~~p~~~~l~~~L~~I~~~Egi~id~~-~L~~L~e~s~G----DIR~aIn~LQ~~~~ 510 (948)
.+.|..|+.+++..+|+..+.. +.++++ .+..|++.+.| ||+.+++.+-..+.
T Consensus 180 ~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 180 QIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAA 237 (254)
T ss_dssp EEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887754 444433 47788888776 66677766655544
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.44 E-value=2e-13 Score=170.66 Aligned_cols=202 Identities=16% Similarity=0.173 Sum_probs=132.1
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..-|+++|+|.+|++++|.+...+.+..+|..+
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~----------------------------------------------- 189 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRR----------------------------------------------- 189 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCS-----------------------------------------------
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcC-----------------------------------------------
Confidence 357999999999999999999998888887631
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCC
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNAS 345 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaS 345 (948)
..+++||+|||||||||+|+++|+.+ |+.++.++++
T Consensus 190 ----------------------------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 190 ----------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp ----------------------------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred ----------------------------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 01468999999999999999999987 8899999987
Q ss_pred CCCCh----HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC-----hhHHHHHHHHHHhhhccccccccccccCc
Q 002241 346 DDRSS----STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG-----KGAVEVILKMVSAERKSNTAKENVAKEDQ 416 (948)
Q Consensus 346 d~rs~----~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~-----~~~~~~Ll~li~~~~~~~~~~~~~~~~~~ 416 (948)
+...+ ..+...+...+.... ....+.||||||||.+.+.+ ..+.+.|..++..
T Consensus 236 ~l~~g~~~~g~~~~~l~~~~~~~~--~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~---------------- 297 (854)
T 1qvr_A 236 SLLAGAKYRGEFEERLKAVIQEVV--QSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR---------------- 297 (854)
T ss_dssp ----------CHHHHHHHHHHHHH--TTCSSEEEEECCC-------------------HHHHHT----------------
T ss_pred HhhccCccchHHHHHHHHHHHHHH--hcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC----------------
Confidence 76432 234444544443221 12467899999999987432 1222334333321
Q ss_pred hhhhhhccccccccCCCcEEEEecCCCc---hhhhhhccceEEEEecCcCHHHHHHHHHHHhh----hcCCCCCHHHHHH
Q 002241 417 PEKISKKKGCKKASLLRPVICICNDLYA---PALRSLRQIAKVHVFIQPSVSRVVSRLKHICN----NESMKTSSIALTT 489 (948)
Q Consensus 417 ~~k~~~kk~~~~~~~~rPII~icNDl~~---p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~----~Egi~id~~~L~~ 489 (948)
....+|++||.... .....+++++..|.|..|+.+++..+|+.++. ..++.++++++..
T Consensus 298 --------------~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~ 363 (854)
T 1qvr_A 298 --------------GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIA 363 (854)
T ss_dssp --------------TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHH
T ss_pred --------------CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHH
Confidence 12458888874321 01133555666799999999999999987766 4588999999999
Q ss_pred HHHHccCC------HHHHHHHHHHHHh
Q 002241 490 LAEYTECD------IRSCLNTLQFLDK 510 (948)
Q Consensus 490 L~e~s~GD------IR~aIn~LQ~~~~ 510 (948)
+++.+.|. .+.++..+.-.+.
T Consensus 364 ~~~ls~r~i~~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 364 AATLSHRYITERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp HHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccChHHHHHHHHHHHH
Confidence 99987543 5566666655543
No 61
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.43 E-value=1.2e-12 Score=146.35 Aligned_cols=195 Identities=13% Similarity=0.120 Sum_probs=143.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CC---CcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCccc-
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GY---HVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDG- 382 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~---~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~- 382 (948)
..+++||+||+|+||++++..+++.+ |+ .++++++. ..+.+ +.+.+.+.+++ +..+||||||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~-l~~~~~~~plf--~~~kvvii~~~~~k 88 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----TDWNA-IFSLCQAMSLF--ASRQTLLLLLPENG 88 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----CCHHH-HHHHHHHHHHC--CSCEEEEEECCSSC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----CCHHH-HHHHhcCcCCc--cCCeEEEEECCCCC
Confidence 34799999999999999999999865 44 35556532 23333 33344444443 4689999999998
Q ss_pred ccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC-----chhhhhhccceEEE
Q 002241 383 ALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY-----APALRSLRQIAKVH 457 (948)
Q Consensus 383 l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~-----~p~Lr~Lr~~~~iI 457 (948)
+.. ...++|+++++... ....+|++|++.. ...+..+.++|.++
T Consensus 89 l~~---~~~~aLl~~le~p~----------------------------~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~ 137 (343)
T 1jr3_D 89 PNA---AINEQLLTLTGLLH----------------------------DDLLLIVRGNKLSKAQENAAWFTALANRSVQV 137 (343)
T ss_dssp CCT---THHHHHHHHHTTCB----------------------------TTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE
T ss_pred CCh---HHHHHHHHHHhcCC----------------------------CCeEEEEEcCCCChhhHhhHHHHHHHhCceEE
Confidence 743 57788888886321 1245777887653 34567788899999
Q ss_pred EecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHhc--CccccccccccceeccccccccHH
Q 002241 458 VFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLDKK--KEILNVMDIGSQVVGRKDMSRSAF 535 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~--~~~~~~~~i~~~~vg~kD~~~~lf 535 (948)
.|.+++..++...|..+|..+|+.++++++..|++.++||+|.+++.|+-++.- .+.++.+++... ++. ....++|
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~-~~~-~~~~~if 215 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQA-VND-AAHFTPF 215 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHH-HHH-HCCCCHH
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHH-Hhh-hhcCCHH
Confidence 999999999999999999999999999999999999999999999999987652 334555555432 222 2233788
Q ss_pred HHHHHHHhcc
Q 002241 536 DIWKEIFQKR 545 (948)
Q Consensus 536 ~i~~~If~~~ 545 (948)
++++.++..+
T Consensus 216 ~l~~ai~~~d 225 (343)
T 1jr3_D 216 HWVDALLMGK 225 (343)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHHCCC
Confidence 8888887653
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.41 E-value=1.4e-12 Score=142.85 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHH---------------HHHHhhhcccccCCCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKI---------------LDVVQMNSVMADSRPK 373 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I---------------~~~~~~~sv~~~~kp~ 373 (948)
.++||+||||||||++|+++|+.+ +..++.++++...........+ ..++. .....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~------~~~~~ 121 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR------RRPYS 121 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHH------HCSSE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHH------hCCCe
Confidence 479999999999999999999997 4568888887665433222221 11111 23458
Q ss_pred EEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC-----------
Q 002241 374 CLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL----------- 442 (948)
Q Consensus 374 iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl----------- 442 (948)
+|||||||.+. ...++.|+.+++...... .++......+..+|++||..
T Consensus 122 vl~lDEi~~l~---~~~~~~Ll~~le~~~~~~-----------------~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~ 181 (311)
T 4fcw_A 122 VILFDAIEKAH---PDVFNILLQMLDDGRLTD-----------------SHGRTVDFRNTVIIMTSNLGSPLILEGLQKG 181 (311)
T ss_dssp EEEEETGGGSC---HHHHHHHHHHHHHSEEEC-----------------TTSCEEECTTEEEEEEESTTHHHHHTTTTSC
T ss_pred EEEEeChhhcC---HHHHHHHHHHHhcCEEEc-----------------CCCCEEECCCcEEEEecccCHHHHHhhhccc
Confidence 99999999984 367888999887543210 00000111233488999972
Q ss_pred -----------------CchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhc---------CCCCCHHHHHHHHHHcc-
Q 002241 443 -----------------YAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNE---------SMKTSSIALTTLAEYTE- 495 (948)
Q Consensus 443 -----------------~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~E---------gi~id~~~L~~L~e~s~- 495 (948)
..+.+ +.++..++.|.+|+.+++..++..++.+. .+.++++++..|++.+-
T Consensus 182 ~~~~~l~~~~~~~~~~~~~~~l--~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (311)
T 4fcw_A 182 WPYERIRDEVFKVLQQHFRPEF--LNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYD 259 (311)
T ss_dssp CCSSTHHHHTHHHHHHHSCHHH--HTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCB
T ss_pred ccHHHHHHHHHHHHHHhCCHHH--HhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCC
Confidence 11111 23345889999999999999988776542 45789999999999754
Q ss_pred --CCHHHHHHHHHHHHh
Q 002241 496 --CDIRSCLNTLQFLDK 510 (948)
Q Consensus 496 --GDIR~aIn~LQ~~~~ 510 (948)
|++|...+.++.++.
T Consensus 260 ~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 260 PVFGARPLRRVIQRELE 276 (311)
T ss_dssp TTTBTTTHHHHHHHHTH
T ss_pred ccCCchhHHHHHHHHHH
Confidence 888888887776543
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.39 E-value=7.2e-13 Score=163.51 Aligned_cols=192 Identities=15% Similarity=0.155 Sum_probs=128.4
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..-|+++|+|.++++++|.+...+.|..+|...
T Consensus 167 ~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~----------------------------------------------- 199 (758)
T 3pxi_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRR----------------------------------------------- 199 (758)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCS-----------------------------------------------
T ss_pred HHHHHHHHhhCCCCCccCchHHHHHHHHHHhCC-----------------------------------------------
Confidence 468999999999999999999999999988730
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCC
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNAS 345 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaS 345 (948)
..+++||+||||||||++|+++|+.+ |..++.+++.
T Consensus 200 ----------------------------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g 245 (758)
T 3pxi_A 200 ----------------------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (758)
T ss_dssp ----------------------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred ----------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc
Confidence 11468999999999999999999997 8888888882
Q ss_pred CCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccc
Q 002241 346 DDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKG 425 (948)
Q Consensus 346 d~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~ 425 (948)
. ...+.++..+...+.... ...+.||||| + .....+.|+..+.
T Consensus 246 ~-~~~G~~e~~l~~~~~~~~---~~~~~iLfiD---~----~~~~~~~L~~~l~-------------------------- 288 (758)
T 3pxi_A 246 T-KYRGEFEDRLKKVMDEIR---QAGNIILFID---A----AIDASNILKPSLA-------------------------- 288 (758)
T ss_dssp --------CTTHHHHHHHHH---TCCCCEEEEC---C------------CCCTT--------------------------
T ss_pred c-cccchHHHHHHHHHHHHH---hcCCEEEEEc---C----chhHHHHHHHHHh--------------------------
Confidence 1 112233334444443222 2568899999 1 1122222322221
Q ss_pred cccccCCCcEEEEecCCCc----hhhhhhccceEEEEecCcCHHHHHHHHHHHhhh----cCCCCCHHHHHHHHHHccCC
Q 002241 426 CKKASLLRPVICICNDLYA----PALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN----ESMKTSSIALTTLAEYTECD 497 (948)
Q Consensus 426 ~~~~~~~rPII~icNDl~~----p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~----Egi~id~~~L~~L~e~s~GD 497 (948)
.....+|++||.... ..-..+++++..|.|..|+.+++..+|+.++.+ .++.+++.++..++..+.+.
T Consensus 289 ----~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~ 364 (758)
T 3pxi_A 289 ----RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (758)
T ss_dssp ----SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred ----cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 113557777775441 111234446688999999999999999988776 78899999999999876544
Q ss_pred H------HHHHHHHHHHH
Q 002241 498 I------RSCLNTLQFLD 509 (948)
Q Consensus 498 I------R~aIn~LQ~~~ 509 (948)
+ +.++..+..++
T Consensus 365 i~~~~~p~~ai~ll~~a~ 382 (758)
T 3pxi_A 365 ISDRFLPDKAIDLIDEAG 382 (758)
T ss_dssp SCCSCTTHHHHHHHHHHH
T ss_pred cccCcCCcHHHHHHHHHH
Confidence 3 45666665544
No 64
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.38 E-value=1.1e-12 Score=147.82 Aligned_cols=191 Identities=19% Similarity=0.223 Sum_probs=120.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH----HHHHHHHHHHhhhccc-ccCCCcEEEecCccccc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS----TIENKILDVVQMNSVM-ADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~----~~~~~I~~~~~~~sv~-~~~kp~iLIIDEID~l~ 384 (948)
..+.+||+||||||||++|+++|++++..++.+++++..... .....+..++...... ....++||||||||.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 347899999999999999999999999999999998755332 1223344443322110 12346899999999987
Q ss_pred CCCh-----------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC-----------
Q 002241 385 GDGK-----------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL----------- 442 (948)
Q Consensus 385 ~~~~-----------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl----------- 442 (948)
.... +.++.|+.+++......... .+..........+..+++.+||++|..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~-------~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~ 202 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ-------GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVE 202 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHCC-----------------------CCCCCTTSSEEEEEECCTTHHHHHHHHHC
T ss_pred ccccccccccccchHHHHHHHHHHhcCceeeccCc-------cccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhh
Confidence 5421 26788888887211100000 000011112234578889999999953
Q ss_pred ------------------------------------CchhhhhhccceEEEEecCcCHHHHHHHHHH----Hh-------
Q 002241 443 ------------------------------------YAPALRSLRQIAKVHVFIQPSVSRVVSRLKH----IC------- 475 (948)
Q Consensus 443 ------------------------------------~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~----I~------- 475 (948)
..|.+ +.++..++.|.+++.+.+..++.. ++
T Consensus 203 ~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l--~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~ 280 (363)
T 3hws_A 203 TGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF--IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALF 280 (363)
T ss_dssp CCC------------CCSCHHHHHHTCCHHHHHHHTCCHHH--HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred ccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHH--hcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 355777888999999988887764 22
Q ss_pred hhcC--CCCCHHHHHHHHHHc---cCCHHHHHHHHHHHH
Q 002241 476 NNES--MKTSSIALTTLAEYT---ECDIRSCLNTLQFLD 509 (948)
Q Consensus 476 ~~Eg--i~id~~~L~~L~e~s---~GDIR~aIn~LQ~~~ 509 (948)
...+ +.++++++..|++.+ .+.+|..-|.++-+.
T Consensus 281 ~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~ 319 (363)
T 3hws_A 281 NLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAAL 319 (363)
T ss_dssp HTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred HhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHH
Confidence 2223 467999999999753 455666666666554
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.37 E-value=3.3e-12 Score=137.21 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=109.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CCcceecCCCCCChHHHHHHHHH----HHh-----hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG---YHVVEVNASDDRSSSTIENKILD----VVQ-----MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG---~~viEiNaSd~rs~~~~~~~I~~----~~~-----~~sv~~~~kp~iLIIDE 379 (948)
..+||+||||||||++|+++++.++ ..++.+|+++... ..+...+.. .+. ...........+|||||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDE 108 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-HHHHHHHHCCC---------CCCCHHHHTTTSEEEEES
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-hHHHHHhcCCcccccccccccccchhhhcCCcEEEEec
Confidence 4699999999999999999999874 6799999987632 222221110 000 00001113467999999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhh------hhhccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPAL------RSLRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~L------r~Lr~~ 453 (948)
||.+.. ..+..|+.+++...... .. +.........||+++|......+ ..|..+
T Consensus 109 i~~l~~---~~q~~Ll~~l~~~~~~~---~g--------------~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~R 168 (265)
T 2bjv_A 109 LATAPM---MVQEKLLRVIEYGELER---VG--------------GSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDA 168 (265)
T ss_dssp GGGSCH---HHHHHHHHHHHHCEECC---CC--------------C--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHH
T ss_pred hHhcCH---HHHHHHHHHHHhCCeec---CC--------------CcccccCCeEEEEecCcCHHHHHHcCCccHHHHHh
Confidence 999854 56777888887532100 00 00011234679999997432111 122222
Q ss_pred e--EEEEecCcCH--HHHHH----HHHHHhhhcCC----CCCHHHHHHHHHHc-cCCHHHHHHHHHHHHh
Q 002241 454 A--KVHVFIQPSV--SRVVS----RLKHICNNESM----KTSSIALTTLAEYT-ECDIRSCLNTLQFLDK 510 (948)
Q Consensus 454 ~--~iI~F~~p~~--~~l~~----~L~~I~~~Egi----~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~ 510 (948)
. ..+.+++... +.+.. +|..++...+. .++++++..|+... .|++|...|.++.++.
T Consensus 169 l~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 169 LAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred hcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 2 3456655543 33433 34555666665 67999999998875 8999999999987753
No 66
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.36 E-value=7.4e-12 Score=135.73 Aligned_cols=171 Identities=23% Similarity=0.241 Sum_probs=106.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCC--hHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC--
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRS--SSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG-- 387 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs--~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~-- 387 (948)
+.++|+||||||||||++++|.+++..++.+++++... .......+...++... ...|.+++|||||.+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~i~~iDeid~l~~~~~~ 150 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK---RHAPCIVFIDEIDAVGRKRGS 150 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH---TSCSEEEEEETHHHHHCC---
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHH---hcCCcEEehhhhHhhhccccc
Confidence 56999999999999999999999998888888764311 1223344555555432 2457899999999775321
Q ss_pred ------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEEEe
Q 002241 388 ------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHVF 459 (948)
Q Consensus 388 ------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F 459 (948)
......+..++..-.. +. .....-+++++|... ++.+....++...+.|
T Consensus 151 ~~~~~~~~~~~~~~~ll~~lsg-------------g~----------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i 207 (278)
T 1iy2_A 151 GVGGGNDEREQTLNQLLVEMDG-------------FE----------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 207 (278)
T ss_dssp -----CHHHHHHHHHHHHHHTT-------------CC----------TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEEC
T ss_pred ccCCcchHHHHHHHHHHHHHhC-------------CC----------CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEe
Confidence 1112222222221000 00 001123555677643 4454433357889999
Q ss_pred cCcCHHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHccC----CHHHHHHHHHHHHh
Q 002241 460 IQPSVSRVVSRLKHICNNESMKTSSI-ALTTLAEYTEC----DIRSCLNTLQFLDK 510 (948)
Q Consensus 460 ~~p~~~~l~~~L~~I~~~Egi~id~~-~L~~L~e~s~G----DIR~aIn~LQ~~~~ 510 (948)
..|+.+++.++|+..+.. +.++++ .+..|+..+.| ||+.+++.+-..+.
T Consensus 208 ~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 208 DAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAA 261 (278)
T ss_dssp CCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999987754 444433 47788888877 55556655544443
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.35 E-value=2.8e-12 Score=158.24 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=130.3
Q ss_pred CCcchhccCCCChhhhhcChhhHHHHHHHHHhccccccCchhhhhhHHHHHHhhhccccccccccCCcchhhcccCCCCC
Q 002241 196 EQLWVDKYAPNSFTELLSDEQTNREVLLWLKQWDSCVFGSEIRSTSEEVLSALRRHSTISQNKKQNDSSFTRKNRGNRWS 275 (948)
Q Consensus 196 ~~LWvdKYrP~~~~eLlg~e~~~r~ll~WLk~Wd~~VF~~~~~~~~~~~~~~l~~~s~~~~~~~~~~~~~~~k~~g~~~~ 275 (948)
..-|+++|+|.+|++++|.+...+.+..+|..+
T Consensus 173 ~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~----------------------------------------------- 205 (758)
T 1r6b_X 173 TTNLNQLARVGGIDPLIGREKELERAIQVLCRR----------------------------------------------- 205 (758)
T ss_dssp SCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSS-----------------------------------------------
T ss_pred hHhHHHHHhcCCCCCccCCHHHHHHHHHHHhcc-----------------------------------------------
Confidence 457999999999999999999999888877631
Q ss_pred CCCccCCCcccccccccccchhhhhcccccCCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCCcceecCC
Q 002241 276 NGNFRNSNNLEYENSNSKGIQDSWHKKTRSTGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----------GYHVVEVNAS 345 (948)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----------G~~viEiNaS 345 (948)
..+.+||+||||||||++|+++|+.+ +..++.++.+
T Consensus 206 ----------------------------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 206 ----------------------------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp ----------------------------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred ----------------------------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 11578999999999999999999986 5566666665
Q ss_pred CCCC----hHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChh--HHHHHHHHHHhhhccccccccccccCchhh
Q 002241 346 DDRS----SSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKG--AVEVILKMVSAERKSNTAKENVAKEDQPEK 419 (948)
Q Consensus 346 d~rs----~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~--~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k 419 (948)
.... ...+...+...+.... ...+.||||||||.+.+.+.. ....+..++....
T Consensus 252 ~l~~~~~~~g~~e~~l~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l----------------- 311 (758)
T 1r6b_X 252 SLLAGTKYRGDFEKRFKALLKQLE---QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL----------------- 311 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHS---SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-----------------
T ss_pred HHhccccccchHHHHHHHHHHHHH---hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-----------------
Confidence 4322 2345556665554322 235799999999998653221 1222233332100
Q ss_pred hhhccccccccCCCcEEEEecCCC----chhhhhhccceEEEEecCcCHHHHHHHHHHHhhh----cCCCCCHHHHHHHH
Q 002241 420 ISKKKGCKKASLLRPVICICNDLY----APALRSLRQIAKVHVFIQPSVSRVVSRLKHICNN----ESMKTSSIALTTLA 491 (948)
Q Consensus 420 ~~~kk~~~~~~~~rPII~icNDl~----~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~----Egi~id~~~L~~L~ 491 (948)
......+|++||... ...-..|.+++..+.|..|+.+++..+|..++.. .++.++++++..++
T Consensus 312 ---------~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 312 ---------SSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV 382 (758)
T ss_dssp ---------SSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ---------hCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 011245777777421 0011224456678999999999999999888765 68889999999999
Q ss_pred HHccC
Q 002241 492 EYTEC 496 (948)
Q Consensus 492 e~s~G 496 (948)
..+.|
T Consensus 383 ~~s~~ 387 (758)
T 1r6b_X 383 ELAVK 387 (758)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87655
No 68
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.35 E-value=5.9e-12 Score=136.76 Aligned_cols=173 Identities=22% Similarity=0.298 Sum_probs=114.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~ 387 (948)
.++.++|+||||||||||+++||.+++..++.++.++..+. ......+...++... ...|+++++||||.+....
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~---~~~p~i~~~Deid~~~~~r 119 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK---NSAPCVIFFDEVDALCPRR 119 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH---HTCSEEEEEETCTTTCC--
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH---hcCCCeEeeehhhhhhccc
Confidence 34669999999999999999999999999999999876543 344556666665432 2468999999999875421
Q ss_pred h--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC--CchhhhhhccceEEE
Q 002241 388 K--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL--YAPALRSLRQIAKVH 457 (948)
Q Consensus 388 ~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl--~~p~Lr~Lr~~~~iI 457 (948)
. ...+.++..+.... + ....-+++++|.. .++++.+-.++...|
T Consensus 120 ~~~~~~~~~~~~~~~l~~Lsgg~-------------------~-------~~~~i~ia~tn~p~~LD~al~r~gRfd~~i 173 (274)
T 2x8a_A 120 SDRETGASVRVVNQLLTEMDGLE-------------------A-------RQQVFIMAATNRPDIIDPAILRPGRLDKTL 173 (274)
T ss_dssp -------CTTHHHHHHHHHHTCC-------------------S-------TTCEEEEEEESCGGGSCHHHHSTTSSCEEE
T ss_pred CCCcchHHHHHHHHHHHhhhccc-------------------c-------cCCEEEEeecCChhhCCHhhcCcccCCeEE
Confidence 1 11122222221100 0 0112355667754 355654444799999
Q ss_pred EecCcCHHHHHHHHHHHhhhc-CCCCC-HHHHHHHHH------HccCCHHHHHHHHHHHHhc
Q 002241 458 VFIQPSVSRVVSRLKHICNNE-SMKTS-SIALTTLAE------YTECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 458 ~F~~p~~~~l~~~L~~I~~~E-gi~id-~~~L~~L~e------~s~GDIR~aIn~LQ~~~~~ 511 (948)
.|..|+.+++..+|+.++... ...++ +..+..|+. .+++||..+++..-+.+.+
T Consensus 174 ~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~ 235 (274)
T 2x8a_A 174 FVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALR 235 (274)
T ss_dssp ECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999888652 23332 334666665 3456999988877665543
No 69
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.34 E-value=5.4e-12 Score=149.91 Aligned_cols=182 Identities=21% Similarity=0.264 Sum_probs=112.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHH-----------HHHHHHHhhhcccccCCCcEEEecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIE-----------NKILDVVQMNSVMADSRPKCLVIDE 379 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~-----------~~I~~~~~~~sv~~~~kp~iLIIDE 379 (948)
..++||+|||||||||||+++|+.++..++.++++.......+. ..+...+... .....+|||||
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~vl~lDE 183 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNPVFLLDE 183 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT----CSSSEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCCEEEEhh
Confidence 36899999999999999999999999999999987644322211 1122222211 12334999999
Q ss_pred cccccCCCh-hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEE
Q 002241 380 IDGALGDGK-GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHV 458 (948)
Q Consensus 380 ID~l~~~~~-~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~ 458 (948)
||.+....+ ..+..|+.+++..+... +... ..+......++-||++||.... ...+|++++.+|.
T Consensus 184 id~l~~~~~~~~~~~LL~~ld~~~~~~-~~~~------------~~~~~~~~~~v~iI~ttN~~~~-l~~aL~~R~~vi~ 249 (543)
T 3m6a_A 184 IDKMSSDFRGDPSSAMLEVLDPEQNSS-FSDH------------YIEETFDLSKVLFIATANNLAT-IPGPLRDRMEIIN 249 (543)
T ss_dssp SSSCC---------CCGGGTCTTTTTB-CCCS------------SSCCCCBCSSCEEEEECSSTTT-SCHHHHHHEEEEE
T ss_pred hhhhhhhhccCHHHHHHHHHhhhhcce-eecc------------cCCeeecccceEEEeccCcccc-CCHHHHhhcceee
Confidence 999976422 23455565554322110 0000 0000011245678899998663 1235566778999
Q ss_pred ecCcCHHHHHHHHHHHhh-----h-----cCCCCCHHHHHHHHHHcc--CCHHHHHHHHHHHHh
Q 002241 459 FIQPSVSRVVSRLKHICN-----N-----ESMKTSSIALTTLAEYTE--CDIRSCLNTLQFLDK 510 (948)
Q Consensus 459 F~~p~~~~l~~~L~~I~~-----~-----Egi~id~~~L~~L~e~s~--GDIR~aIn~LQ~~~~ 510 (948)
|..|+.+++..+|...+. . .++.++++++..|++.+. |.+|..-+.++.++.
T Consensus 250 ~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 250 IAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp CCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 999999999999887652 2 355789999999998654 678887777776654
No 70
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.33 E-value=4.1e-12 Score=157.45 Aligned_cols=165 Identities=21% Similarity=0.291 Sum_probs=114.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh--HHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS--STIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~--~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
....+.+||+|||||||||||+++|.+++..++.+|+++..+. ......+...++... ...|.+|||||||.+..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~---~~~p~il~iDEid~l~~ 311 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE---KNAPAIIFIDELDAIAP 311 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHH---HHCSEEEEEESGGGTSC
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHH---hcCCcEEEeccHHHhhh
Confidence 3445789999999999999999999999999999998775442 345556666665432 24689999999998875
Q ss_pred CCh--------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceE
Q 002241 386 DGK--------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAK 455 (948)
Q Consensus 386 ~~~--------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~ 455 (948)
... .....|+.++.... ......+|++||+.. ++.++...++..
T Consensus 312 ~~~~~~~~~~~~~~~~Ll~ll~g~~--------------------------~~~~v~vI~atn~~~~ld~al~r~gRf~~ 365 (806)
T 1ypw_A 312 KREKTHGEVERRIVSQLLTLMDGLK--------------------------QRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (806)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHSSC--------------------------TTSCCEEEEECSCTTTSCTTTTSTTSSCE
T ss_pred ccccccchHHHHHHHHHHHHhhhhc--------------------------ccccEEEecccCCchhcCHHHhccccccc
Confidence 321 12334444443110 122456788888743 556655556778
Q ss_pred EEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHH
Q 002241 456 VHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCL 502 (948)
Q Consensus 456 iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aI 502 (948)
.+.|..|+.++...+|+.++.+..+. ++..+..++..+.|-....+
T Consensus 366 ~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 366 EVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp EECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHH
Confidence 89999999999999999888765542 33456777777766544433
No 71
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.32 E-value=5.3e-12 Score=142.86 Aligned_cols=193 Identities=19% Similarity=0.199 Sum_probs=117.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh----HHHHHHHHHHHhhhc-ccccCCCcEEEecCcccccC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS----STIENKILDVVQMNS-VMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~----~~~~~~I~~~~~~~s-v~~~~kp~iLIIDEID~l~~ 385 (948)
...+||+||||||||++|+++|++++..++.++++..... ......+...+.... ......+.||||||||.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 4679999999999999999999999999999998875421 112223333332111 01123578999999999865
Q ss_pred CCh-----------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC-ch--------
Q 002241 386 DGK-----------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY-AP-------- 445 (948)
Q Consensus 386 ~~~-----------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~-~p-------- 445 (948)
... +.++.|+.+++........... .............++..+||++|... .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~-------~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~ 224 (376)
T 1um8_A 152 LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGG-------RKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQ 224 (376)
T ss_dssp ------------CHHHHHHHHHHHHCCEEC----------------------CEECTTCEEEEEECCTTHHHHTTTSCSS
T ss_pred hcCCCceecccchHHHHHHHHHHhhccceecccccc-------cccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcc
Confidence 411 2778888888743210000000 00000111123455667888877200 00
Q ss_pred -------------------------------hhhhhcc-ceEEEEecCcCHHHHHHHHHH----Hhh---------hcCC
Q 002241 446 -------------------------------ALRSLRQ-IAKVHVFIQPSVSRVVSRLKH----ICN---------NESM 480 (948)
Q Consensus 446 -------------------------------~Lr~Lr~-~~~iI~F~~p~~~~l~~~L~~----I~~---------~Egi 480 (948)
....+.. +..++.|++++.+++..++.. ++. ..++
T Consensus 225 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 304 (376)
T 1um8_A 225 NVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDL 304 (376)
T ss_dssp CCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE
T ss_pred cccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceE
Confidence 0112233 447899999999999888862 221 2246
Q ss_pred CCCHHHHHHHHHHcc---CCHHHHHHHHHHHHh
Q 002241 481 KTSSIALTTLAEYTE---CDIRSCLNTLQFLDK 510 (948)
Q Consensus 481 ~id~~~L~~L~e~s~---GDIR~aIn~LQ~~~~ 510 (948)
.++++++..|++.+. |++|.+.+.++.+..
T Consensus 305 ~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~ 337 (376)
T 1um8_A 305 IFEEEAIKEIAQLALERKTGARGLRAIIEDFCL 337 (376)
T ss_dssp EECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred EECHHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 789999999999865 999999999987754
No 72
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.26 E-value=1.3e-11 Score=137.20 Aligned_cols=121 Identities=14% Similarity=0.057 Sum_probs=73.9
Q ss_pred CCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhh
Q 002241 371 RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSL 450 (948)
Q Consensus 371 kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~L 450 (948)
.+.+|||||||.+.. ..++.|+.+++.........+ .........-+|+++|.........|
T Consensus 144 ~~~vl~iDEi~~l~~---~~~~~Ll~~le~~~~~~~~~g---------------~~~~~~~~~~li~~~n~~~~~l~~~L 205 (350)
T 1g8p_A 144 NRGYLYIDECNLLED---HIVDLLLDVAQSGENVVERDG---------------LSIRHPARFVLVGSGNPEEGDLRPQL 205 (350)
T ss_dssp TTEEEEETTGGGSCH---HHHHHHHHHHHHSEEEECCTT---------------CCEEEECCEEEEEEECSCSCCCCHHH
T ss_pred CCCEEEEeChhhCCH---HHHHHHHHHHhcCceEEEecc---------------eEEeeCCceEEEEEeCCCCCCCCHHH
Confidence 468999999999853 567788888875321000000 00001123446777885321122334
Q ss_pred ccc-eEEEEecCc-CHHHHHHHHHHH-----------------------------hhhcCCCCCHHHHHHHHHHccC---
Q 002241 451 RQI-AKVHVFIQP-SVSRVVSRLKHI-----------------------------CNNESMKTSSIALTTLAEYTEC--- 496 (948)
Q Consensus 451 r~~-~~iI~F~~p-~~~~l~~~L~~I-----------------------------~~~Egi~id~~~L~~L~e~s~G--- 496 (948)
.++ ...+.|..| ..+....++..+ +...++.++++++..|++.+.+
T Consensus 206 ~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~ 285 (350)
T 1g8p_A 206 LDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS 285 (350)
T ss_dssp HTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS
T ss_pred HhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC
Confidence 444 455889888 455444555331 2345678999999999998766
Q ss_pred -CHHHHHHHHHHHH
Q 002241 497 -DIRSCLNTLQFLD 509 (948)
Q Consensus 497 -DIR~aIn~LQ~~~ 509 (948)
++|.+++.|+.+.
T Consensus 286 ~~~R~~~~ll~~a~ 299 (350)
T 1g8p_A 286 DGLRGELTLLRSAR 299 (350)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 8999999987664
No 73
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.26 E-value=5.9e-11 Score=134.67 Aligned_cols=175 Identities=16% Similarity=0.133 Sum_probs=113.2
Q ss_pred ceEEE--EcCCCCcHHHHHHHHHHHh---------CCCcceecCCCCCChHHHHHHHHHHHhhh----------------
Q 002241 312 KVLLL--CGPPGLGKTTLAHVAAKHC---------GYHVVEVNASDDRSSSTIENKILDVVQMN---------------- 364 (948)
Q Consensus 312 k~LLL--~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd~rs~~~~~~~I~~~~~~~---------------- 364 (948)
.+++| +||+|+||||||+.+++++ ++.++.+++....+...+...+...+...
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 130 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALV 130 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 57899 9999999999999999876 67788999765555444433332222100
Q ss_pred -cccccCCCcEEEecCcccccCC---ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEec
Q 002241 365 -SVMADSRPKCLVIDEIDGALGD---GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICN 440 (948)
Q Consensus 365 -sv~~~~kp~iLIIDEID~l~~~---~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icN 440 (948)
.+...+++.+|||||+|.+... ....+..|+.++..... . + ......+|+++|
T Consensus 131 ~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~---~-----------------~---~~~~v~lI~~~~ 187 (412)
T 1w5s_A 131 DNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS---R-----------------D---GVNRIGFLLVAS 187 (412)
T ss_dssp HHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC---T-----------------T---SCCBEEEEEEEE
T ss_pred HHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc---C-----------------C---CCceEEEEEEec
Confidence 0001256889999999998643 33445555555432100 0 0 002244777887
Q ss_pred CCCch-hhh-----hhccceEEEEecCcCHHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHcc------CCHHHHHHHHH
Q 002241 441 DLYAP-ALR-----SLRQIAKVHVFIQPSVSRVVSRLKHICNNES--MKTSSIALTTLAEYTE------CDIRSCLNTLQ 506 (948)
Q Consensus 441 Dl~~p-~Lr-----~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Eg--i~id~~~L~~L~e~s~------GDIR~aIn~LQ 506 (948)
+.... .+. ..++++..+.|.+++.+++..+|...+...+ ..++++++..|++.++ |+.|.+++.++
T Consensus 188 ~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~ 267 (412)
T 1w5s_A 188 DVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALK 267 (412)
T ss_dssp ETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHH
T ss_pred cccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 64311 111 1123344499999999999999987665432 3578999999999999 99999988876
Q ss_pred HHH
Q 002241 507 FLD 509 (948)
Q Consensus 507 ~~~ 509 (948)
.+.
T Consensus 268 ~a~ 270 (412)
T 1w5s_A 268 MAC 270 (412)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.22 E-value=3.3e-11 Score=148.66 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCCh------------HHH---HHHHHHHHhhhcccccCCCcEEE
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSS------------STI---ENKILDVVQMNSVMADSRPKCLV 376 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~------------~~~---~~~I~~~~~~~sv~~~~kp~iLI 376 (948)
..+||+||||||||++|+++|+.++..++.+|++..... ... ...+.+++. ...+.|||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~------~~~~~vl~ 562 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI------KHPHAVLL 562 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH------HCSSEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHH------hCCCcEEE
Confidence 379999999999999999999999999999998875331 111 111222222 23478999
Q ss_pred ecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCch-----------
Q 002241 377 IDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAP----------- 445 (948)
Q Consensus 377 IDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p----------- 445 (948)
|||||.+. ...++.|+.+++....... .+......+.-||++||.....
T Consensus 563 lDEi~~~~---~~~~~~Ll~~le~~~~~~~-----------------~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~ 622 (758)
T 1r6b_X 563 LDEIEKAH---PDVFNILLQVMDNGTLTDN-----------------NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQ 622 (758)
T ss_dssp EETGGGSC---HHHHHHHHHHHHHSEEEET-----------------TTEEEECTTEEEEEEECSSCC------------
T ss_pred EeCccccC---HHHHHHHHHHhcCcEEEcC-----------------CCCEEecCCeEEEEecCcchhhhhhcccCcccc
Confidence 99999884 4678889998875432110 0111112345588888863210
Q ss_pred ------------hh-hhhcc-ceEEEEecCcCHHHHHHHHHHHhhhc---------CCCCCHHHHHHHHHHc---cCCHH
Q 002241 446 ------------AL-RSLRQ-IAKVHVFIQPSVSRVVSRLKHICNNE---------SMKTSSIALTTLAEYT---ECDIR 499 (948)
Q Consensus 446 ------------~L-r~Lr~-~~~iI~F~~p~~~~l~~~L~~I~~~E---------gi~id~~~L~~L~e~s---~GDIR 499 (948)
.+ ..+.. +..+|.|++++.+.+..++...+.+. .+.++++++..|++.+ ++++|
T Consensus 623 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R 702 (758)
T 1r6b_X 623 DNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGAR 702 (758)
T ss_dssp -----CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTT
T ss_pred chHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCch
Confidence 11 12333 44789999999999999988777532 3578999999999976 55577
Q ss_pred HHHHHHHHHH
Q 002241 500 SCLNTLQFLD 509 (948)
Q Consensus 500 ~aIn~LQ~~~ 509 (948)
.+.+.++...
T Consensus 703 ~l~~~i~~~~ 712 (758)
T 1r6b_X 703 PMARVIQDNL 712 (758)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666554
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.18 E-value=7.9e-11 Score=145.33 Aligned_cols=169 Identities=19% Similarity=0.266 Sum_probs=111.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHH-HHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTI-ENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~-~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
.+||+||||||||++|+++|+.+ +..++.+|+++....... ...+..++. ...++||||||||.+. .
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~------~~~~~vl~lDEi~~~~---~ 593 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR------RKPYSVVLLDAIEKAH---P 593 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHH------HCSSSEEEEECGGGSC---H
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHH------hCCCeEEEEeCccccC---H
Confidence 79999999999999999999997 688999999876543211 111222222 2356899999999884 4
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc----------hhhhh-hc-cceEE
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA----------PALRS-LR-QIAKV 456 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~----------p~Lr~-Lr-~~~~i 456 (948)
..++.|+.+++....... .+......+..||++||.... ..+++ +. ++..+
T Consensus 594 ~~~~~Ll~~le~g~~~~~-----------------~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~ 656 (758)
T 3pxi_A 594 DVFNILLQVLEDGRLTDS-----------------KGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEI 656 (758)
T ss_dssp HHHHHHHHHHHHSBCC----------------------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEE
T ss_pred HHHHHHHHHhccCeEEcC-----------------CCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeE
Confidence 778889999876432110 111123445678999994321 00111 23 34479
Q ss_pred EEecCcCHHHHHHHHHHHhhh---------cCCCCCHHHHHHHHHH---ccCCHHHHHHHHHH
Q 002241 457 HVFIQPSVSRVVSRLKHICNN---------ESMKTSSIALTTLAEY---TECDIRSCLNTLQF 507 (948)
Q Consensus 457 I~F~~p~~~~l~~~L~~I~~~---------Egi~id~~~L~~L~e~---s~GDIR~aIn~LQ~ 507 (948)
|.|++++.+++..++...+.. ..+.++++++..|++. -.|.+|..-+.++-
T Consensus 657 i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~ 719 (758)
T 3pxi_A 657 IVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQK 719 (758)
T ss_dssp EECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHH
Confidence 999999999999888776654 2457899999999885 24566665555553
No 76
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.16 E-value=6.4e-11 Score=119.64 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=53.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCChHHHHHHHHHHHhhhcc----cccCCCcEEEecCcccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRSSSTIENKILDVVQMNSV----MADSRPKCLVIDEIDGA 383 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv----~~~~kp~iLIIDEID~l 383 (948)
++++|+||+|+|||||++++|..+ |+.++.++..+ +...+......... ....++.||||||++..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD------LIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH------HHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH------HHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 689999999999999999999886 78888877643 22223222221110 01236899999999843
Q ss_pred cCCChhHHHHHHHHHHh
Q 002241 384 LGDGKGAVEVILKMVSA 400 (948)
Q Consensus 384 ~~~~~~~~~~Ll~li~~ 400 (948)
. .+......|..+++.
T Consensus 113 ~-~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 113 R-LSDWQRELISYIITY 128 (180)
T ss_dssp C-CCHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHH
Confidence 2 233455566666653
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.14 E-value=1.7e-10 Score=127.14 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=108.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHH--------Hh-hhcccccCCCcEEEecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDV--------VQ-MNSVMADSRPKCLVIDE 379 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~--------~~-~~sv~~~~kp~iLIIDE 379 (948)
..+||+||||||||++|+++++.. +..++.+|++.... ..+...+-.. .. ...........+|||||
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDE 104 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 104 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEES
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEec
Confidence 579999999999999999999975 67899999986532 1222111000 00 00000012347999999
Q ss_pred cccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh------hccc
Q 002241 380 IDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS------LRQI 453 (948)
Q Consensus 380 ID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~------Lr~~ 453 (948)
||.+.. ..+..|+.+++...... .. +.........||++||......+.. |..+
T Consensus 105 i~~l~~---~~q~~Ll~~l~~~~~~~---~g--------------~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~R 164 (304)
T 1ojl_A 105 IGDISP---LMQVRLLRAIQEREVQR---VG--------------SNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYR 164 (304)
T ss_dssp CTTCCH---HHHHHHHHHHHSSBCCB---TT--------------BCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHH
T ss_pred cccCCH---HHHHHHHHHHhcCEeee---cC--------------CcccccCCeEEEEecCccHHHHHHhCCcHHHHHhh
Confidence 999854 56677888876532100 00 0001234567999999753322211 2222
Q ss_pred --eEEEEecCcC--HHHHHHH----HHHHhhhcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHh
Q 002241 454 --AKVHVFIQPS--VSRVVSR----LKHICNNES---MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDK 510 (948)
Q Consensus 454 --~~iI~F~~p~--~~~l~~~----L~~I~~~Eg---i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~ 510 (948)
...|.+++.. .+.+..+ |..++...+ ..++++++..|..++ .|++|...|.++.++.
T Consensus 165 l~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 165 LNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred cCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 3345555544 2333333 344444444 578999999999987 8999999999998764
No 78
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.13 E-value=3.1e-12 Score=158.57 Aligned_cols=180 Identities=20% Similarity=0.270 Sum_probs=114.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChH--HHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSS--TIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~--~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
+....+++||+|||||||||||+++|++++..++.+++++..+.. .....+...++... ...|+||||||||.+.
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~---~~~p~vl~iDEid~l~ 583 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR---QAAPCVLFFDELDSIA 583 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHH---HHCSBCCCCSSHHHHC
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHH---hcCCeEEEEEChhhhh
Confidence 445678899999999999999999999999999999999875532 22334444444332 2358999999999986
Q ss_pred CCCh-------hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceE
Q 002241 385 GDGK-------GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAK 455 (948)
Q Consensus 385 ~~~~-------~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~ 455 (948)
.... +....++..+..... .. ......-||++||... ++++....++..
T Consensus 584 ~~r~~~~~~~~~~~~~v~~~LL~~ld----~~------------------~~~~~v~vI~tTN~~~~ld~allrpgRf~~ 641 (806)
T 1ypw_A 584 KARGGNIGDGGGAADRVINQILTEMD----GM------------------STKKNVFIIGATNRPDIIDPAILRPGRLDQ 641 (806)
T ss_dssp CTTTTCCSHHHHHHHHHHHHHHTTCC----------------------------CCBCCCCCBSCGGGSCTTSSGGGTTS
T ss_pred hhccCCCCCcchhHHHHHHHHHHHHh----cc------------------cccCCeEEEEecCCcccCCHHHhCccccCc
Confidence 5321 122333332221111 00 0012355777777643 334322226778
Q ss_pred EEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHH----ccCCHHHHHHHHHHHHhcC
Q 002241 456 VHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEY----TECDIRSCLNTLQFLDKKK 512 (948)
Q Consensus 456 iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~----s~GDIR~aIn~LQ~~~~~~ 512 (948)
.|.|+.|+.+++..+|+..+.+..+. .+..+..|++. +++||+.+++.....+.+.
T Consensus 642 ~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 642 LIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp CCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSC
T ss_pred eeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887665442 22234444443 4559999998887777653
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.12 E-value=2.3e-10 Score=142.93 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=115.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHH---------------HHHHHHHhhhcccccCCCc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIE---------------NKILDVVQMNSVMADSRPK 373 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~---------------~~I~~~~~~~sv~~~~kp~ 373 (948)
..+||+||||||||++|+++|+.+ +..++.+|++......... ..+..++. ...+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~------~~~~~ 662 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR------RRPYS 662 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHH------HCSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHH------hCCCe
Confidence 479999999999999999999998 7889999998765431111 11112221 23468
Q ss_pred EEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc---------
Q 002241 374 CLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA--------- 444 (948)
Q Consensus 374 iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~--------- 444 (948)
+|||||||.+. ...++.|+.+++...... .++......+..||++||-...
T Consensus 663 vl~lDEi~~l~---~~~~~~Ll~~l~~~~~~~-----------------~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~ 722 (854)
T 1qvr_A 663 VILFDEIEKAH---PDVFNILLQILDDGRLTD-----------------SHGRTVDFRNTVIILTSNLGSPLILEGLQKG 722 (854)
T ss_dssp EEEESSGGGSC---HHHHHHHHHHHTTTEECC-----------------SSSCCEECTTEEEEEECCTTHHHHHHHHHTT
T ss_pred EEEEecccccC---HHHHHHHHHHhccCceEC-----------------CCCCEeccCCeEEEEecCcChHHHhhhcccc
Confidence 99999999874 467888999887543210 0111111223458888885110
Q ss_pred -------hh--------hhh-h-ccceEEEEecCcCHHHHHHHHHHHhhh---------cCCCCCHHHHHHHHHHcc---
Q 002241 445 -------PA--------LRS-L-RQIAKVHVFIQPSVSRVVSRLKHICNN---------ESMKTSSIALTTLAEYTE--- 495 (948)
Q Consensus 445 -------p~--------Lr~-L-r~~~~iI~F~~p~~~~l~~~L~~I~~~---------Egi~id~~~L~~L~e~s~--- 495 (948)
.. +++ | .++..++.|.+++.+.+..++...+.. ..+.++++++..|++.+-
T Consensus 723 ~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~ 802 (854)
T 1qvr_A 723 WPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPV 802 (854)
T ss_dssp CCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTT
T ss_pred cchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCC
Confidence 00 111 2 234478889999999988888766542 135789999999999864
Q ss_pred CCHHHHHHHHHHHH
Q 002241 496 CDIRSCLNTLQFLD 509 (948)
Q Consensus 496 GDIR~aIn~LQ~~~ 509 (948)
|++|...+.++...
T Consensus 803 gn~R~L~~~i~~~~ 816 (854)
T 1qvr_A 803 FGARPLRRVIQREL 816 (854)
T ss_dssp TBTSTHHHHHHHHT
T ss_pred CChHHHHHHHHHHH
Confidence 88888888777653
No 80
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.04 E-value=8.8e-10 Score=118.55 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=84.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
|.+++++|+||||||||++|.+||+.++. .-.+|.++. ...+.......+++.||.. +..+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~---------------~f~l~~~~~k~i~l~Ee~~-~~~d~~ 164 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNE---------------NFPFNDCVDKMVIWWEEGK-MTAKVV 164 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCS---------------SCTTGGGSSCSEEEECSCC-EETTTH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccc---------------ccccccccccEEEEecccc-chhHHH
Confidence 44578999999999999999999998754 234454321 0111112234566666665 444332
Q ss_pred hHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC-C---------CchhhhhhccceEEEE
Q 002241 389 GAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND-L---------YAPALRSLRQIAKVHV 458 (948)
Q Consensus 389 ~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND-l---------~~p~Lr~Lr~~~~iI~ 458 (948)
..++ .++..... ... .+.++. ......|+|++||. + ......+|++++.++.
T Consensus 165 ~~lr---~i~~G~~~----~id----------~K~k~~-~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~ 226 (267)
T 1u0j_A 165 ESAK---AILGGSKV----RVD----------QKCKSS-AQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFE 226 (267)
T ss_dssp HHHH---HHHTTCCE----EC----------------C-CEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEE
T ss_pred HHHH---HHhCCCcE----EEe----------cCcCCc-ccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEE
Confidence 3333 33321100 000 111111 13456899999997 2 1356678999999999
Q ss_pred ec--------CcCHHHHHHHHHHHhhhcCCCCC
Q 002241 459 FI--------QPSVSRVVSRLKHICNNESMKTS 483 (948)
Q Consensus 459 F~--------~p~~~~l~~~L~~I~~~Egi~id 483 (948)
|. +.+.+.+..++..+ ..++++++
T Consensus 227 F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 227 LTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp CCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred CCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 98 78889999999865 77777654
No 81
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.98 E-value=2e-09 Score=123.87 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=73.3
Q ss_pred CcEEEecCcccccCCC---------hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEe---
Q 002241 372 PKCLVIDEIDGALGDG---------KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICIC--- 439 (948)
Q Consensus 372 p~iLIIDEID~l~~~~---------~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ic--- 439 (948)
..||++||||.+.... .|.+++|+++++....+... ......+.-+||+.
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~------------------~~~d~~~ilfI~~gaf~ 312 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH------------------GMVKTDHILFIASGAFQ 312 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT------------------EEEECTTCEEEEEECCS
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc------------------ceecCCcEEEEeccccc
Confidence 3489999999996431 24667999999864432110 01224455567765
Q ss_pred --cCCCchhhhhhcc-ceEEEEecCcCHHHHHHHHH-----------HHhhhcCC--CCCHHHHHHHHHHc--------c
Q 002241 440 --NDLYAPALRSLRQ-IAKVHVFIQPSVSRVVSRLK-----------HICNNESM--KTSSIALTTLAEYT--------E 495 (948)
Q Consensus 440 --NDl~~p~Lr~Lr~-~~~iI~F~~p~~~~l~~~L~-----------~I~~~Egi--~id~~~L~~L~e~s--------~ 495 (948)
|... .+.+|.. +..+|.|+.++.++++.++. ..+..+++ .++++++..|++.+ +
T Consensus 313 ~~~~~d--lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~ 390 (444)
T 1g41_A 313 VARPSD--LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN 390 (444)
T ss_dssp SCCGGG--SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred cCChhh--cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCcc
Confidence 3221 2233444 45568999999999999983 23333454 67899999999852 3
Q ss_pred CCHHHHHHHHHHHH
Q 002241 496 CDIRSCLNTLQFLD 509 (948)
Q Consensus 496 GDIR~aIn~LQ~~~ 509 (948)
...|..-+.++-++
T Consensus 391 ~GaR~L~~~ie~~~ 404 (444)
T 1g41_A 391 IGARRLHTVMERLM 404 (444)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 45555555555443
No 82
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.96 E-value=3e-09 Score=103.94 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=53.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCCh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGK 388 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~ 388 (948)
..+||+||||||||++|+++++.. +..++ +|++...........+.. ....+|+|||||.+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~----------a~~g~l~ldei~~l~~--- 90 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIAL----------AQGGTLVLSHPEHLTR--- 90 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHHH----------HTTSCEEEECGGGSCH---
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHHH----------cCCcEEEEcChHHCCH---
Confidence 469999999999999999999986 77888 998876544222222211 1347899999999853
Q ss_pred hHHHHHHHHH
Q 002241 389 GAVEVILKMV 398 (948)
Q Consensus 389 ~~~~~Ll~li 398 (948)
..+..|+.++
T Consensus 91 ~~q~~Ll~~l 100 (145)
T 3n70_A 91 EQQYHLVQLQ 100 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566777777
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.90 E-value=2.4e-08 Score=120.12 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=72.3
Q ss_pred CCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC----Cchh
Q 002241 371 RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL----YAPA 446 (948)
Q Consensus 371 kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl----~~p~ 446 (948)
.+.+||||||+.+. ...+..|+..++......... ......... .........-||+++|.. ..+.
T Consensus 201 ~~gvL~LDEi~~l~---~~~q~~Ll~~Le~~~~~~~g~---~~~~~~~~l----~~~~~p~~~~vI~atn~~~~~~l~~~ 270 (604)
T 3k1j_A 201 HKGVLFIDEIATLS---LKMQQSLLTAMQEKKFPITGQ---SEMSSGAMV----RTEPVPCDFVLVAAGNLDTVDKMHPA 270 (604)
T ss_dssp TTSEEEETTGGGSC---HHHHHHHHHHHHHSEECCBCS---CTTSGGGGC----BCSCEECCCEEEEEECHHHHHHSCHH
T ss_pred CCCEEEEechhhCC---HHHHHHHHHHHHcCcEEeccc---ccccccccC----CCCccceeEEEEEecCHHHHhhcCHH
Confidence 46799999999973 477888999987644321100 000000000 000112345589999953 2333
Q ss_pred hhhhccce----EEEEecCc---CHHHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHc---cC-------CHHHHHHH
Q 002241 447 LRSLRQIA----KVHVFIQP---SVSRVVSRLKHICNNE-----SMKTSSIALTTLAEYT---EC-------DIRSCLNT 504 (948)
Q Consensus 447 Lr~Lr~~~----~iI~F~~p---~~~~l~~~L~~I~~~E-----gi~id~~~L~~L~e~s---~G-------DIR~aIn~ 504 (948)
| ++++ ..+.|+.. ....+..++..++... ...++++++..|++.+ .| .+|.+.+.
T Consensus 271 l---~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 271 L---RSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp H---HHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred H---HHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 3 3333 45666432 3444555555554432 2578999999999875 56 48888888
Q ss_pred HHHHH
Q 002241 505 LQFLD 509 (948)
Q Consensus 505 LQ~~~ 509 (948)
++.+.
T Consensus 348 lr~A~ 352 (604)
T 3k1j_A 348 VRAAG 352 (604)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.88 E-value=1e-09 Score=107.18 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
..+||+||||||||++|++++++.+ .++.+|+++..... +...+. .....+|+|||||.+.. ..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-----~~~~~~------~a~~~~l~lDei~~l~~---~~q 92 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-----PMELLQ------KAEGGVLYVGDIAQYSR---NIQ 92 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----HHHHHH------HTTTSEEEEEECTTCCH---HHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----hhhHHH------hCCCCeEEEeChHHCCH---HHH
Confidence 4699999999999999999999988 89999987532211 112222 12357999999999843 556
Q ss_pred HHHHHHHHh
Q 002241 392 EVILKMVSA 400 (948)
Q Consensus 392 ~~Ll~li~~ 400 (948)
..|+.+++.
T Consensus 93 ~~Ll~~l~~ 101 (143)
T 3co5_A 93 TGITFIIGK 101 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 677777764
No 85
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.85 E-value=5.2e-09 Score=122.67 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=95.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--CcceecCCCCCChHHHHHH--HHHHHhhhcc--cccC---CCcEEEecCccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY--HVVEVNASDDRSSSTIENK--ILDVVQMNSV--MADS---RPKCLVIDEIDG 382 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~--~viEiNaSd~rs~~~~~~~--I~~~~~~~sv--~~~~---kp~iLIIDEID~ 382 (948)
.++||+||||||||++|+++|+.++. .+..+++.- .+...+... +........+ ...+ .++|||||||+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhh
Confidence 58999999999999999999998853 223333321 122222110 0000000111 1111 467999999987
Q ss_pred ccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcE-EEEecCCCc--hhh-hhhccceEEEE
Q 002241 383 ALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPV-ICICNDLYA--PAL-RSLRQIAKVHV 458 (948)
Q Consensus 383 l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPI-I~icNDl~~--p~L-r~Lr~~~~iI~ 458 (948)
+. ......|+..++....... + . ......++ |+.||.+.. ..+ .-+.++...+.
T Consensus 121 ~~---~~~q~~LL~~lee~~v~i~--G----------------~-~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~ 178 (500)
T 3nbx_X 121 AG---PAILNTLLTAINERQFRNG--A----------------H-VEKIPMRLLVAASNELPEADSSLEALYDRMLIRLW 178 (500)
T ss_dssp CC---HHHHHHHHHHHHSSEEECS--S----------------S-EEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEE
T ss_pred hc---HHHHHHHHHHHHHHhccCC--C----------------C-cCCcchhhhhhccccCCCccccHHHHHHHHHHHHH
Confidence 63 4677888988875432110 0 0 01223445 777886543 011 22345677788
Q ss_pred ecCcCH-HHHHHHHHHHhh-----------------------hcCCCCCHHHHHHHHHHc----------cCCHHHHHHH
Q 002241 459 FIQPSV-SRVVSRLKHICN-----------------------NESMKTSSIALTTLAEYT----------ECDIRSCLNT 504 (948)
Q Consensus 459 F~~p~~-~~l~~~L~~I~~-----------------------~Egi~id~~~L~~L~e~s----------~GDIR~aIn~ 504 (948)
++.|+. ++...+|...+. ..++.++++++..|++.. +...|..+..
T Consensus 179 v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~l 258 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKA 258 (500)
T ss_dssp CCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHH
T ss_pred HHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHH
Confidence 888876 566666654332 125667777777777654 3356665544
Q ss_pred HH
Q 002241 505 LQ 506 (948)
Q Consensus 505 LQ 506 (948)
+.
T Consensus 259 lr 260 (500)
T 3nbx_X 259 IR 260 (500)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 86
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.84 E-value=5.2e-09 Score=107.32 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=43.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhc----ccccCCCcEEEecCccccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNS----VMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~s----v~~~~kp~iLIIDEID~l~ 384 (948)
+.++|+||||+||||||+++|+++ |+.++.+++++. ...+........ +.....+.+||||||+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL------FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH------HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH------HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCc
Confidence 689999999999999999999987 778888877531 111111110000 0001134699999997654
No 87
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.79 E-value=1.3e-07 Score=104.12 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCC------ChHHHHHHHHHHHhh----------------------
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDR------SSSTIENKILDVVQM---------------------- 363 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~r------s~~~~~~~I~~~~~~---------------------- 363 (948)
++++|+||+|+|||||++.++++++ ++.+++.... +...+...+...+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999986 6666654332 222222222211100
Q ss_pred -----------hcccccCCCcEEEecCcccccC----CChhHHHHHHHHHHhhhccccccccccccCchhhhhhcccccc
Q 002241 364 -----------NSVMADSRPKCLVIDEIDGALG----DGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKK 428 (948)
Q Consensus 364 -----------~sv~~~~kp~iLIIDEID~l~~----~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~ 428 (948)
........+.+|||||++.+.. ........|..++...
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~--------------------------- 162 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL--------------------------- 162 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC---------------------------
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc---------------------------
Confidence 0000011388999999999854 2223344443333210
Q ss_pred ccCCCcEEEEecCCCc-hhh-------hhhc-cceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHH
Q 002241 429 ASLLRPVICICNDLYA-PAL-------RSLR-QIAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIR 499 (948)
Q Consensus 429 ~~~~rPII~icNDl~~-p~L-------r~Lr-~~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR 499 (948)
.+..+|+++..... ..+ .++. +....+.+.+.+.++..+.+...+...|..++++.+..|++.++|...
T Consensus 163 --~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 163 --PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp --TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH
T ss_pred --CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 12336666543210 111 1222 345688999999999999998888778888999999999999999987
Q ss_pred HH
Q 002241 500 SC 501 (948)
Q Consensus 500 ~a 501 (948)
.+
T Consensus 241 ~l 242 (350)
T 2qen_A 241 WL 242 (350)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.77 E-value=1.6e-08 Score=104.44 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=69.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
+.|.++++||+|||||||||+|.++|+.++..++.+..+. +. + .+ .. .....+|||||+|...
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~--f------~l--~~---l~~~kIiiLDEad~~~-- 116 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SH--F------WL--EP---LTDTKVAMLDDATTTC-- 116 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SC--G------GG--GG---GTTCSSEEEEEECHHH--
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--ch--h------hh--cc---cCCCCEEEEECCCchh--
Confidence 4667789999999999999999999999877665532111 10 0 00 11 1235699999998531
Q ss_pred ChhHH-HHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC--chhhhhhccceEEEEecCc
Q 002241 387 GKGAV-EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY--APALRSLRQIAKVHVFIQP 462 (948)
Q Consensus 387 ~~~~~-~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~--~p~Lr~Lr~~~~iI~F~~p 462 (948)
...+ ..+..+++.... . ...+.+. .......|+|+|||... ....+.|.++...+.|+.+
T Consensus 117 -~~~~d~~lrn~ldG~~~------~--------iD~Khr~-~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 117 -WTYFDTYMRNALDGNPI------S--------IDRKHKP-LIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNA 179 (212)
T ss_dssp -HHHHHHHCHHHHHTCCE------E--------EC----C-CEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSC
T ss_pred -HHHHHHHHHHHhCCCcc------c--------HHHhhcC-ccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCC
Confidence 1111 122222221100 0 0001111 01122459999999632 3345678888889998743
No 89
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.76 E-value=5.3e-09 Score=115.44 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=42.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCChHHHHHHHHHHHhhh---c-ccccCCCcEEEecCcccc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRSSSTIENKILDVVQMN---S-VMADSRPKCLVIDEIDGA 383 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs~~~~~~~I~~~~~~~---s-v~~~~kp~iLIIDEID~l 383 (948)
+.++|+||||||||+||+++|+++ |+.|+.+++++ +...+..+.... . +....+..+||||||+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~------l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS------FAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH------HHHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH------HHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 689999999999999999999865 48888887753 112221111000 0 001124579999999754
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.70 E-value=3e-08 Score=97.71 Aligned_cols=72 Identities=13% Similarity=0.260 Sum_probs=55.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
...+++|+||+|+|||||+++++..+ |+.++.+++.+.... .+ ..++.+|||||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------~~--~~~~~lLilDE~~~~~~- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------DA--AFEAEYLAVDQVEKLGN- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------GG--GGGCSEEEEESTTCCCS-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------HH--HhCCCEEEEeCccccCh-
Confidence 45789999999999999999999987 888999998776543 01 13578999999987543
Q ss_pred ChhHHHHHHHHHHh
Q 002241 387 GKGAVEVILKMVSA 400 (948)
Q Consensus 387 ~~~~~~~Ll~li~~ 400 (948)
.....|+.+++.
T Consensus 98 --~~~~~l~~li~~ 109 (149)
T 2kjq_A 98 --EEQALLFSIFNR 109 (149)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 225667777764
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.58 E-value=5.9e-07 Score=99.08 Aligned_cols=161 Identities=10% Similarity=-0.011 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCC-----CChHHHHHHHHHHHhh-----------------------
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD-----RSSSTIENKILDVVQM----------------------- 363 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~-----rs~~~~~~~I~~~~~~----------------------- 363 (948)
++++|+||+|+|||||++.++++++..++.+++... .+...+...+...+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 599999999999999999999999888888887643 2323333332222210
Q ss_pred -----------h-------cccccC-CCcEEEecCcccccCC-ChhHHHHHHHHHHhhhccccccccccccCchhhhhhc
Q 002241 364 -----------N-------SVMADS-RPKCLVIDEIDGALGD-GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKK 423 (948)
Q Consensus 364 -----------~-------sv~~~~-kp~iLIIDEID~l~~~-~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~k 423 (948)
. .+.... +|.+|||||++.+... .......|..++...
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~---------------------- 168 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNL---------------------- 168 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC----------------------
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcC----------------------
Confidence 0 000011 3889999999988542 223333333333210
Q ss_pred cccccccCCCcEEEEecCCCc-hhh-------hhhcc-ceEEEEecCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHc
Q 002241 424 KGCKKASLLRPVICICNDLYA-PAL-------RSLRQ-IAKVHVFIQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYT 494 (948)
Q Consensus 424 k~~~~~~~~rPII~icNDl~~-p~L-------r~Lr~-~~~iI~F~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s 494 (948)
....+|+++..... ..+ .++.. ....+.+.+.+.+++...+...+...++..+.. ..|++.+
T Consensus 169 -------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~t 239 (357)
T 2fna_A 169 -------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEKI 239 (357)
T ss_dssp -------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHHH
T ss_pred -------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHHh
Confidence 01346777664310 111 12332 347889999999999999988776667666554 8899999
Q ss_pred cCCHHHHHH
Q 002241 495 ECDIRSCLN 503 (948)
Q Consensus 495 ~GDIR~aIn 503 (948)
+|....+..
T Consensus 240 ~G~P~~l~~ 248 (357)
T 2fna_A 240 GGIPGWLTY 248 (357)
T ss_dssp CSCHHHHHH
T ss_pred CCCHHHHHH
Confidence 998876443
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.51 E-value=1.8e-07 Score=127.26 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=97.9
Q ss_pred CceEEEEcCCCCcHHHHH-HHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhc-----cc---ccCCCcEEEecCcc
Q 002241 311 QKVLLLCGPPGLGKTTLA-HVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNS-----VM---ADSRPKCLVIDEID 381 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA-~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~s-----v~---~~~kp~iLIIDEID 381 (948)
++.+||+||||||||++| +++++..++.++.+|.|...+...+...+...+.... +. ..+++.||+||||+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 379999999999999999 6777767899999999998888777766665443211 11 13567899999998
Q ss_pred cccCC---ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC----chhhhhhccce
Q 002241 382 GALGD---GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY----APALRSLRQIA 454 (948)
Q Consensus 382 ~l~~~---~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~----~p~Lr~Lr~~~ 454 (948)
....+ .+..++.|..+++.... .. . +.+......+.-+|+.||... .+.-..+.+++
T Consensus 1347 mp~~d~yg~q~~lelLRq~le~gg~------yd---------~-~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLMEKQGF------WK---------T-PENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA 1410 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHHHTSSE------EC---------T-TTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE
T ss_pred cccccccCchhHHHHHHHHHhcCCE------EE---------c-CCCcEEEecCEEEEEecCCCccCCCccCChhhhhee
Confidence 54322 23455555555543211 00 0 000001112345778888763 12223455577
Q ss_pred EEEEecCcCHHHHHHHHHHHhhh
Q 002241 455 KVHVFIQPSVSRVVSRLKHICNN 477 (948)
Q Consensus 455 ~iI~F~~p~~~~l~~~L~~I~~~ 477 (948)
.++.++.|+.+.+..++..++..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999888753
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.37 E-value=8.7e-07 Score=100.08 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=109.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC--cceecCCCCCChHHHHHHHHHHHhhh--cc----------cccCCCcEEEe
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH--VVEVNASDDRSSSTIENKILDVVQMN--SV----------MADSRPKCLVI 377 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~--viEiNaSd~rs~~~~~~~I~~~~~~~--sv----------~~~~kp~iLII 377 (948)
..+||+|++|+||+++|+++.+..+.. ++.+|++..... .++..+ +... .+ ........|+|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~-~~~~~l---fg~~~g~~tga~~~~~g~~~~a~~gtlfl 228 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE-LAESEL---FGHEKGAFTGALTRKKGKLELADQGTLFL 228 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT-THHHHH---HEECSCSSSSCCCCEECHHHHTTTSEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH-HHHHHh---cCccccccCCcccccCChHhhcCCCeEEe
Confidence 458999999999999999999886543 999999875332 222211 1110 00 01124568999
Q ss_pred cCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh------hc
Q 002241 378 DEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS------LR 451 (948)
Q Consensus 378 DEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~------Lr 451 (948)
|||+.+.. ..+..|+..++........ +.........||+.||......+.. |.
T Consensus 229 dei~~l~~---~~Q~~Ll~~l~~~~~~~~g-----------------~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 229 DEVGELDQ---RVQAKLLRVLETGSFTRLG-----------------GNQKIEVDIRVISATNKNLEEEIKKGNFREDLY 288 (368)
T ss_dssp ETGGGSCH---HHHHHHHHHHHHSEECCBT-----------------CCCBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred cChhhCCH---HHHHHHHHHHHhCCcccCC-----------------CCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 99999853 6778899988764321100 0011234567899998543322221 11
Q ss_pred c--ceEEEEecCcCH--HHHHHH----HHHHhhhcC---CCCCHHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 002241 452 Q--IAKVHVFIQPSV--SRVVSR----LKHICNNES---MKTSSIALTTLAEYT-ECDIRSCLNTLQFLDKK 511 (948)
Q Consensus 452 ~--~~~iI~F~~p~~--~~l~~~----L~~I~~~Eg---i~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~~ 511 (948)
. ....|++++... +.+... |...+...+ +.++++++..|..+. .|++|...|.++.++..
T Consensus 289 ~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 289 YRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred HHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 1 233455554433 333333 344454444 458999999999987 89999999999988653
No 94
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.37 E-value=6.5e-08 Score=116.00 Aligned_cols=161 Identities=16% Similarity=0.085 Sum_probs=82.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce----ecCCCCCChHHHHHHHHHHHhh-hcccccCCCcEEEecCcccccCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE----VNASDDRSSSTIENKILDVVQM-NSVMADSRPKCLVIDEIDGALGD 386 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE----iNaSd~rs~~~~~~~I~~~~~~-~sv~~~~kp~iLIIDEID~l~~~ 386 (948)
.++||+||||||||++|+++|+.++..++. .++++.... .+.......... ..........+|+|||||.+..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~-~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~- 405 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAA-VVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD- 405 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEE-CSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS-
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccce-eeeccccccccccCCeeEecCCCcEEeehhhhCCH-
Confidence 479999999999999999999998644332 222221110 000000000000 0000012357999999999854
Q ss_pred ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCc------------hhhhhhccce
Q 002241 387 GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYA------------PALRSLRQIA 454 (948)
Q Consensus 387 ~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~------------p~Lr~Lr~~~ 454 (948)
.....|++.++.........+. ........-||+++|.... ....++.+++
T Consensus 406 --~~q~~Ll~~le~~~i~i~~~g~---------------~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RF 468 (595)
T 3f9v_A 406 --EDRVAIHEAMEQQTVSIAKAGI---------------VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRF 468 (595)
T ss_dssp --HHHHHHHHHHHSSSEEEESSSS---------------EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGC
T ss_pred --hHhhhhHHHHhCCEEEEecCCc---------------EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhC
Confidence 5677888888754321100000 0011234568889986421 1112333333
Q ss_pred -EEEE-ecCcCHHHHHHHHHHHhhhcC-----CCCCHHHHHHHHH
Q 002241 455 -KVHV-FIQPSVSRVVSRLKHICNNES-----MKTSSIALTTLAE 492 (948)
Q Consensus 455 -~iI~-F~~p~~~~l~~~L~~I~~~Eg-----i~id~~~L~~L~e 492 (948)
.++. ...|+.+ ...++..++.... -.++.+.+..++.
T Consensus 469 Dl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 469 DLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIA 512 (595)
T ss_dssp SCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHH
T ss_pred eEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHH
Confidence 3343 4455555 6666667765433 1234444555544
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.33 E-value=7.9e-07 Score=103.26 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=15.0
Q ss_pred cccCCcchhccCCCChhhhh-cChhhHHHHHHHHH
Q 002241 193 VVHEQLWVDKYAPNSFTELL-SDEQTNREVLLWLK 226 (948)
Q Consensus 193 ~~~~~LWvdKYrP~~~~eLl-g~e~~~r~ll~WLk 226 (948)
..++..|++||+|.+|.+|- ++......++.||.
T Consensus 8 ~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~ 42 (459)
T 3upu_A 8 HHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIK 42 (459)
T ss_dssp -------------CCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCccCCCccccCCCccccCCHHHHHHHHHHHHHHh
Confidence 45678999999999999996 45556666666665
No 96
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.24 E-value=4.3e-06 Score=84.69 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
.+.|.||+|+|||||+++++..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999998763
No 97
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.10 E-value=8.5e-06 Score=92.57 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=106.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CCcceecCCCCCChHHHHHHHHHHHhhh--cc----------cccCCCcEEE
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG---YHVVEVNASDDRSSSTIENKILDVVQMN--SV----------MADSRPKCLV 376 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG---~~viEiNaSd~rs~~~~~~~I~~~~~~~--sv----------~~~~kp~iLI 376 (948)
..+||+|++|||||++|+++....+ -.++.+|++.... ..+... .+... .+ .......+|+
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~-~~~~~e---lfg~~~g~~tga~~~~~g~~~~a~~gtlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-DIFEAE---LFGYEKGAFTGAVSSKEGFFELADGGTLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-HHHHHH---HHCBCTTSSTTCCSCBCCHHHHTTTSEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH-HHHHHH---hcCCCCCCCCCcccccCCceeeCCCcEEE
Confidence 4579999999999999999998754 5789999986432 222221 11110 00 0112357999
Q ss_pred ecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhh--h----
Q 002241 377 IDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRS--L---- 450 (948)
Q Consensus 377 IDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~--L---- 450 (948)
||||+.+.. ..+..|+..++........ +........-||+.||......++. +
T Consensus 237 ldei~~l~~---~~q~~Ll~~l~~~~~~~~g-----------------~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl 296 (387)
T 1ny5_A 237 LDEIGELSL---EAQAKLLRVIESGKFYRLG-----------------GRKEIEVNVRILAATNRNIKELVKEGKFREDL 296 (387)
T ss_dssp EESGGGCCH---HHHHHHHHHHHHSEECCBT-----------------CCSBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred EcChhhCCH---HHHHHHHHHHhcCcEEeCC-----------------CCceeeccEEEEEeCCCCHHHHHHcCCccHHH
Confidence 999999853 6778888888764321100 0011234566899998643322211 1
Q ss_pred --ccceEEEEecCcCH--HHHHHH----HHHHhhhcCC---CCCHHHHHHHHHHc-cCCHHHHHHHHHHHHh
Q 002241 451 --RQIAKVHVFIQPSV--SRVVSR----LKHICNNESM---KTSSIALTTLAEYT-ECDIRSCLNTLQFLDK 510 (948)
Q Consensus 451 --r~~~~iI~F~~p~~--~~l~~~----L~~I~~~Egi---~id~~~L~~L~e~s-~GDIR~aIn~LQ~~~~ 510 (948)
|-....|++++... +.+... |..++.+.+. .++++++..|..+. .|++|..-|.++.++.
T Consensus 297 ~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~ 368 (387)
T 1ny5_A 297 YYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVL 368 (387)
T ss_dssp HHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 11233455544321 333333 3445555443 47899999999875 7999999999998765
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.08 E-value=5.2e-06 Score=91.46 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=48.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC--CCC-----CChHHHHHHHHHHHhhhcccccCCCcEEEecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA--SDD-----RSSSTIENKILDVVQMNSVMADSRPKCLVIDE 379 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa--Sd~-----rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDE 379 (948)
|.+..+++||+||||+|||+||..+|.+.|+.++.+.. .+. ...+.+...+.+.+. .. . +|||||
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~------~~-~-LLVIDs 190 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML------QH-R-VIVIDS 190 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH------HC-S-EEEEEC
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh------hC-C-EEEEec
Confidence 45667889999999999999999999988888777666 111 122223233333322 12 2 999999
Q ss_pred cccccC
Q 002241 380 IDGALG 385 (948)
Q Consensus 380 ID~l~~ 385 (948)
|+.+..
T Consensus 191 I~aL~~ 196 (331)
T 2vhj_A 191 LKNVIG 196 (331)
T ss_dssp CTTTC-
T ss_pred cccccc
Confidence 998854
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.02 E-value=1.9e-05 Score=107.70 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=97.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGA 390 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~ 390 (948)
....++.||+|||||++|+.+|+.+|..++.+|+++......+...+..+.+. ...+++|||+.+.. ..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~--------Gaw~~~DE~nr~~~---ev 713 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQI--------GAWGCFDEFNRLDE---KV 713 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHH--------TCEEEEETTTSSCH---HH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhc--------CCEeeehhhhhcCh---HH
Confidence 36789999999999999999999999999999999998887776666655542 36899999998744 34
Q ss_pred HHHHHHHHHhhhccccccc-cccccCchhhhhhcccccc-ccCCCcEEEEecCCCc---hhhhhhccceEEEEecCcCHH
Q 002241 391 VEVILKMVSAERKSNTAKE-NVAKEDQPEKISKKKGCKK-ASLLRPVICICNDLYA---PALRSLRQIAKVHVFIQPSVS 465 (948)
Q Consensus 391 ~~~Ll~li~~~~~~~~~~~-~~~~~~~~~k~~~kk~~~~-~~~~rPII~icNDl~~---p~Lr~Lr~~~~iI~F~~p~~~ 465 (948)
+.+|...+..-........ ..... |... .....-|++|.|.-|. ..-..|++++..|.+..|+.+
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~----------g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~ 783 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLL----------EEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSG 783 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECS----------SSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeC----------CcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHH
Confidence 4444222221111000000 00000 0001 1223336666775442 122457778889999999999
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHH
Q 002241 466 RVVSRLKHICNNESMKTSSIALTTL 490 (948)
Q Consensus 466 ~l~~~L~~I~~~Egi~id~~~L~~L 490 (948)
.+.+++.. ..|+.........|
T Consensus 784 ~i~ei~l~---s~Gf~~a~~la~ki 805 (2695)
T 4akg_A 784 TIAEMILQ---IMGFEDSKSLASKI 805 (2695)
T ss_dssp HHHHHHHH---HHHCSSHHHHHHHH
T ss_pred HHHHHHHH---hcCCCchHHHHHHH
Confidence 88887643 34554444443333
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.94 E-value=1.1e-05 Score=110.59 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=96.6
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHHhCCCcceecCCCCCChHHHHHHHHHHHhh------hcccc---cCCCcEEEecCc
Q 002241 311 QKVLLLCGPPGLGKTTLAH-VAAKHCGYHVVEVNASDDRSSSTIENKILDVVQM------NSVMA---DSRPKCLVIDEI 380 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~-~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~------~sv~~---~~kp~iLIIDEI 380 (948)
++.+||+||||||||+++. ++++..++.++.+|.|...+...+...+...+.. ..+.. .++..||+||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 4789999999999997764 5555568889999999998888887777543321 11111 255679999999
Q ss_pred ccccCC---ChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCC----chhhhhhccc
Q 002241 381 DGALGD---GKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLY----APALRSLRQI 453 (948)
Q Consensus 381 D~l~~~---~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~----~p~Lr~Lr~~ 453 (948)
+....+ .+..+..|..+++...- +.. +++........-+|++||... .+.-.++.++
T Consensus 1384 Nmp~~D~yGtQ~~ielLrqlld~~g~--yd~--------------~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~ 1447 (3245)
T 3vkg_A 1384 NLPSTDKYGTQRVITFIRQMVEKGGF--WRT--------------SDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRH 1447 (3245)
T ss_dssp TCCCCCTTSCCHHHHHHHHHHHHSEE--EET--------------TTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred CCCCccccccccHHHHHHHHHHcCCe--EEC--------------CCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhh
Confidence 854332 23455666666653221 000 000011123445888898764 2223445667
Q ss_pred eEEEEecCcCHHHHHHHHHHHhh
Q 002241 454 AKVHVFIQPSVSRVVSRLKHICN 476 (948)
Q Consensus 454 ~~iI~F~~p~~~~l~~~L~~I~~ 476 (948)
+.++.+..|+.+.+..+...|+.
T Consensus 1448 F~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1448 APILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCHHHHHHHHHHHHH
Confidence 77899999999999999776654
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.80 E-value=8.5e-05 Score=76.63 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=28.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
-+...+++|+||+|+|||||++.+|..+ +..++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4556899999999999999999999653 555555543
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.68 E-value=0.00016 Score=74.13 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=34.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASD 346 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd 346 (948)
|-+...+++|+||||+||||++..+|...|..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566789999999999999999999987788888887655
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.59 E-value=0.00013 Score=96.60 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHH------------------HHHHHHHHhhhc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTI------------------ENKILDVVQMNS 365 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~------------------~~~I~~~~~~~s 365 (948)
|.+..++++|+||||||||+||.++|.++ |..++.+.+......... +..+..+. .
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~---~ 1499 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---A 1499 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH---H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHH---H
Confidence 56778999999999999999999888764 788888887754332211 11111111 1
Q ss_pred ccccCCCcEEEecCcccccC
Q 002241 366 VMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~~ 385 (948)
+....++++|||||++++..
T Consensus 1500 lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCC
T ss_pred HHhcCCCCEEEEcChhHhcc
Confidence 11246799999999998765
No 104
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.57 E-value=3.9e-05 Score=84.80 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=54.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCC------CChHHHHHHHHHHHhhhcccccCCCcEEEecCccccc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD------RSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~------rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~ 384 (948)
.++++|+||+|+||||++..||+++|+.++.++.--. .+...-.... .+ -...+||.+|-.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~-----------~g-vph~lid~~~~~~ 72 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELL-----------AR-YPHRLIDIRDPAE 72 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHH-----------HH-SCEETSSCBCTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHH-----------cC-CCEEEeeccCccc
Confidence 3689999999999999999999999987777654311 1100000000 01 1246677665432
Q ss_pred CCC-hhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCcC
Q 002241 385 GDG-KGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQPS 463 (948)
Q Consensus 385 ~~~-~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p~ 463 (948)
.-+ ..+.......+..-. ..-+.||++-.+.+|..+|-. .+ ..|+ +.
T Consensus 73 ~~~~~~F~~~a~~~i~~i~--------------------------~~g~~~IlvGGt~~y~~all~--g~---~~~p-~~ 120 (323)
T 3crm_A 73 SYSAAEFRADALAAMAKAT--------------------------ARGRIPLLVGGTMLYYKALLE--GL---ADMP-GA 120 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHH--------------------------HTTCEEEEEESCHHHHHHHHC--CC----------
T ss_pred ccCHHHHHHHHHHHHHHHH--------------------------HcCCeEEEECCchhhHHHHHc--CC---CCCC-CC
Confidence 211 234333333333211 011356776666666555421 11 1222 23
Q ss_pred HHHHHHHHHHHhhhcCC--------CCCHHHHHHHHHHccCCHHHHHHHHHHHHhcCcc
Q 002241 464 VSRVVSRLKHICNNESM--------KTSSIALTTLAEYTECDIRSCLNTLQFLDKKKEI 514 (948)
Q Consensus 464 ~~~l~~~L~~I~~~Egi--------~id~~~L~~L~e~s~GDIR~aIn~LQ~~~~~~~~ 514 (948)
...+...|...+..+|. .+|+.....| ..+|.|.++..|+.+...+..
T Consensus 121 ~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i---~~nd~~Ri~RALEv~~~tG~~ 176 (323)
T 3crm_A 121 DPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARI---HPNDPQRLMRALEVYRLGGVS 176 (323)
T ss_dssp -----------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhc---CCCCHHHHHHHHHHHHHHCCC
Confidence 34456666666666553 2344443333 357999999999988665443
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.48 E-value=0.00022 Score=72.83 Aligned_cols=24 Identities=50% Similarity=0.857 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..+.|.||+|+|||||++.+|..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368899999999999999999876
No 106
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.48 E-value=0.00035 Score=78.22 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=49.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChH------------------HHHHHHHHHHhhhc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSS------------------TIENKILDVVQMNS 365 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~------------------~~~~~I~~~~~~~s 365 (948)
|-+...+++|+||||+||||||..+|.++ |..++.++........ .+.+ +...+. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~-~l~~~~--~ 133 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQ-ALEIAD--M 133 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHH--H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHH-HHHHHH--H
Confidence 55677899999999999999999888653 6677777664422211 0111 111111 1
Q ss_pred ccccCCCcEEEecCccccc
Q 002241 366 VMADSRPKCLVIDEIDGAL 384 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~ 384 (948)
+....++.+||||++..+.
T Consensus 134 l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHTTTCCSEEEEECGGGCC
T ss_pred HHhcCCCCEEEEcChHhhc
Confidence 1124568999999999886
No 107
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.46 E-value=0.00039 Score=77.91 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=50.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChH------------------HHHHHHHHHHhhhc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSS------------------TIENKILDVVQMNS 365 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~------------------~~~~~I~~~~~~~s 365 (948)
|.+...+++|+||||+|||||+..+|.++ |..++.++........ .+.+.+ ..+. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l-~~~~--~ 133 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL-EIVD--E 133 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH-HHHH--H
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH-HHHH--H
Confidence 56778999999999999999999998874 6778777765432211 111111 1111 0
Q ss_pred ccccCCCcEEEecCcccccC
Q 002241 366 VMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~~ 385 (948)
+.....+.+||||.+..+..
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 11135789999999988764
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.44 E-value=0.0011 Score=91.57 Aligned_cols=175 Identities=13% Similarity=0.122 Sum_probs=106.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccCCChhHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALGDGKGAV 391 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~~~~~~~ 391 (948)
.+..+.||+|||||.+++.+|+.+|..++.+|+++......+...+..+.+. ....++|||+.+.. ..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~--------GaW~cfDEfNrl~~---~vL 673 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQC--------GAWGCFDEFNRLEE---RIL 673 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHH--------TCEEEEETTTSSCH---HHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhc--------CcEEEehhhhcCCH---HHH
Confidence 4567999999999999999999999999999999988877665555555543 24678899998843 444
Q ss_pred HHHHHHHHhhhccccccccccccCchhhhhhcccc-ccccCCCcEEEEecCCCc---hhhhhhccceEEEEecCcCHHHH
Q 002241 392 EVILKMVSAERKSNTAKENVAKEDQPEKISKKKGC-KKASLLRPVICICNDLYA---PALRSLRQIAKVHVFIQPSVSRV 467 (948)
Q Consensus 392 ~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~-~~~~~~rPII~icNDl~~---p~Lr~Lr~~~~iI~F~~p~~~~l 467 (948)
.++...+..-+........ ..... .|. ......+-|++|.|.-|. ..-..|+.+++.|.+..|+.+.+
T Consensus 674 Svv~~qi~~I~~a~~~~~~-~~~~~-------~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 674 SAVSQQIQTIQVALKENSK-EVELL-------GGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMI 745 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTCS-EECCC----------CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-eEEec-------CCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHH
Confidence 4444444321110000000 00000 000 011223457777886553 12245778899999999999998
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHH------H-------ccCCHHHHHHHHHHH
Q 002241 468 VSRLKHICNNESMKTSSIALTTLAE------Y-------TECDIRSCLNTLQFL 508 (948)
Q Consensus 468 ~~~L~~I~~~Egi~id~~~L~~L~e------~-------s~GDIR~aIn~LQ~~ 508 (948)
.+++ +..+|+.-.......|+. . .+--+|+.-..|-.+
T Consensus 746 ~ei~---L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~A 796 (3245)
T 3vkg_A 746 AQVM---LYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSA 796 (3245)
T ss_dssp HHHH---HHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHH
T ss_pred HHHH---HHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence 8876 346677533333333332 1 123477766666544
No 109
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.41 E-value=0.00014 Score=74.86 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
-+.|++|+||+|||++|..++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999998775433
No 110
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.39 E-value=0.00048 Score=77.27 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=50.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCCh---------------------HHHHHHHHHHHh
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSS---------------------STIENKILDVVQ 362 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~---------------------~~~~~~I~~~~~ 362 (948)
|-+...+++|+||||+||||+|..+|.++ |..++.++....... ..+...+....
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~- 137 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 137 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH-
Confidence 56778999999999999999999888764 778888877432221 11111221111
Q ss_pred hhcccccCCCcEEEecCcccccC
Q 002241 363 MNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 363 ~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
....+.+||||.+..+..
T Consensus 138 -----~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 -----RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp -----HHTCCSEEEEECGGGCCC
T ss_pred -----hccCCCEEEEcCHHHhcc
Confidence 135689999999998764
No 111
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.00066 Score=70.73 Aligned_cols=38 Identities=37% Similarity=0.512 Sum_probs=28.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
|-+...+++|+||||+||||++..+|.. .|..++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4456689999999999999998877654 3556666554
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=0.00047 Score=71.81 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH--h-------CCCcceecCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH--C-------GYHVVEVNASD 346 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke--l-------G~~viEiNaSd 346 (948)
|.+...+++|+||||+|||||+..+|.. + +..++.++..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4466789999999999999999999985 2 45677777655
No 113
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.35 E-value=0.0035 Score=74.45 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=81.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH-----hCC--CcceecCCCCCChHHHHHHHHHHHhh-h-------------------
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH-----CGY--HVVEVNASDDRSSSTIENKILDVVQM-N------------------- 364 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke-----lG~--~viEiNaSd~rs~~~~~~~I~~~~~~-~------------------- 364 (948)
++++|+||+|+||||||..+++. ..| .++.++.+.. ....+...+...... .
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 226 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDR 226 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHH
Confidence 78999999999999999988742 123 3566665443 222222222221110 0
Q ss_pred --c-ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecC
Q 002241 365 --S-VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICND 441 (948)
Q Consensus 365 --s-v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icND 441 (948)
. +....++.+||||+++.. .. +..+ ....-||+|+-+
T Consensus 227 l~~~l~~~~~~~LLVLDdv~~~-----~~----l~~l-------------------------------~~~~~ilvTsR~ 266 (591)
T 1z6t_A 227 LRILMLRKHPRSLLILDDVWDS-----WV----LKAF-------------------------------DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHTCTTCEEEEEEECCH-----HH----HHTT-------------------------------CSSCEEEEEESC
T ss_pred HHHHHccCCCCeEEEEeCCCCH-----HH----HHHh-------------------------------cCCCeEEEECCC
Confidence 0 001226789999999742 11 1100 012346666655
Q ss_pred CCchhhhhhccceEEEEe-cCcCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Q 002241 442 LYAPALRSLRQIAKVHVF-IQPSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIRSCLNTLQFLD 509 (948)
Q Consensus 442 l~~p~Lr~Lr~~~~iI~F-~~p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR~aIn~LQ~~~ 509 (948)
.... .........+.. .+.+.++..+.+...+... .......+..|++.|+|-.-..-....++.
T Consensus 267 ~~~~--~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l~ 332 (591)
T 1z6t_A 267 KSVT--DSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGALLR 332 (591)
T ss_dssp GGGG--TTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHH--HhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 3321 111111122221 3678888888887766431 122246788999999997655444444443
No 114
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.34 E-value=0.00048 Score=72.25 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
..+.|++||+|+||||++.-+|..+ |..++.++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~ 48 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKP 48 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 3689999999999999998877764 667776643
No 115
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.34 E-value=0.0001 Score=73.96 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.+.++|+||+|+||||+++.||+.+|+.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 36899999999999999999999999988754
No 116
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.33 E-value=0.00069 Score=76.26 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=50.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChH------------------HHHHHHHHHHhhhc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSS------------------TIENKILDVVQMNS 365 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~------------------~~~~~I~~~~~~~s 365 (948)
|-+...+++|+||||+||||+|..+|.++ |..++.++........ .+. .+...+. .
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e-~~l~~l~--~ 146 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGE-QALEIME--L 146 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHH--H
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHH-HHHHHHH--H
Confidence 55777899999999999999999888764 6778877765422211 011 1111111 1
Q ss_pred ccccCCCcEEEecCcccccC
Q 002241 366 VMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~~ 385 (948)
+.....+.+||||.+..+..
T Consensus 147 l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCC
T ss_pred HHhcCCCCEEEEeChHHhcc
Confidence 11235689999999998864
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.30 E-value=0.00015 Score=72.98 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.+.+++|+|+||+||||+++.||+.+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34789999999999999999999999987765
No 118
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.29 E-value=0.00015 Score=72.19 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
++++|+||||+||||+++.||+.++..++.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 68999999999999999999999987766543
No 119
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.26 E-value=0.00016 Score=71.14 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
.+++|+||||+||||+++.||+.+|+.++...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 47899999999999999999999998876544
No 120
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.23 E-value=0.00037 Score=91.46 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=49.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCCh------------------HHHHHHHHHHHhhhc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSS------------------STIENKILDVVQMNS 365 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~------------------~~~~~~I~~~~~~~s 365 (948)
|.|..+++|||||||||||+||+++|.+. |-..+.|.....-.. +.-+..+..+....
T Consensus 1078 G~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a- 1156 (1706)
T 3cmw_A 1078 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 1156 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH-
T ss_pred CCCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH-
Confidence 46788999999999999999999999875 334444444321100 00223333333222
Q ss_pred ccccCCCcEEEecCcccccC
Q 002241 366 VMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 366 v~~~~kp~iLIIDEID~l~~ 385 (948)
....|++|++||||.+.+
T Consensus 1157 --r~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1157 --RSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp --HHTCCSEEEESCGGGCCC
T ss_pred --HhcCCeEEEeCchHhcCc
Confidence 245799999999997765
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.00016 Score=73.87 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
..+.++|+||+|+||||+++.||+.+|+.++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 347899999999999999999999999887754
No 122
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.20 E-value=0.00037 Score=77.03 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=34.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCCcceecCCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---------GYHVVEVNASDD 347 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd~ 347 (948)
|-+...+++|+||||+|||++|..+|.++ |..++.++....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 45667899999999999999999999875 667888877654
No 123
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.15 E-value=0.00028 Score=71.62 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
++.+++||+|+||||++.-+++. .|..++.+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 68999999999999999666654 4777766543
No 124
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.14 E-value=0.00023 Score=75.88 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
++++|+||||+||||+|+.||+++|+.++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 478999999999999999999999988776654
No 125
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.14 E-value=0.00041 Score=78.42 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=47.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
+.+.+++++|+||+|+|||||++++|...+..++.++.++.+.. + . ++ .+ ....++++||++.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~--~--~----lg--~~---~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN--F--E----LG--VA---IDQFLVVFEDVKGTGG 230 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHH--H--H----HG--GG---TTCSCEEETTCCCSTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHH--H--H----HH--Hh---cchhHHHHHHHHHHHH
Confidence 34566899999999999999999999999888777666554321 1 1 11 11 2335679999998754
No 126
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.12 E-value=0.0027 Score=66.58 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASD 346 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd 346 (948)
-.+++.|+||+||||++-.+|..+ |+.|+-+....
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 458999999999999988888764 89887666643
No 127
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.11 E-value=0.00022 Score=71.28 Aligned_cols=32 Identities=41% Similarity=0.647 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.+.++|+|+||+||||+++.||+.+|+.++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 46899999999999999999999999877654
No 128
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.08 E-value=0.0012 Score=68.90 Aligned_cols=26 Identities=46% Similarity=0.598 Sum_probs=23.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHH
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lA 332 (948)
|-+...++.|.||+|+|||||+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44567899999999999999999988
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.08 E-value=0.00024 Score=71.14 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.+++|+|+||+||||+|+.||+.+|+.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 4689999999999999999999999887643
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.08 E-value=0.00024 Score=71.60 Aligned_cols=33 Identities=36% Similarity=0.644 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH-hCCCccee
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH-CGYHVVEV 342 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke-lG~~viEi 342 (948)
..+.++|+|+||+||||+++.||+. +|+.++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 4578999999999999999999999 78877654
No 131
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.07 E-value=0.0011 Score=68.35 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCCcceecCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---------GYHVVEVNASD 346 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd 346 (948)
|-+...++.|.||+|+|||||++.+|..+ +..++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 44566899999999999999999999853 22366666544
No 132
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.06 E-value=0.0039 Score=73.79 Aligned_cols=147 Identities=15% Similarity=0.161 Sum_probs=83.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH----Hh--CCC-cceecCCCCC--ChHHHHHHHHHHHhhhc----------------
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAK----HC--GYH-VVEVNASDDR--SSSTIENKILDVVQMNS---------------- 365 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAk----el--G~~-viEiNaSd~r--s~~~~~~~I~~~~~~~s---------------- 365 (948)
.+++.|+|++|+||||||..+++ .. .|. ++.++.+... +...+...|...+....
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 48999999999999999999997 22 232 3445555542 23333333333332110
Q ss_pred ---cc--ccC-CCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEe
Q 002241 366 ---VM--ADS-RPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICIC 439 (948)
Q Consensus 366 ---v~--~~~-kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~ic 439 (948)
+. -.+ ++.+||||+++.. ..+ .+... ...-||+|+
T Consensus 232 ~~~l~~~L~~~kr~LlVLDdv~~~-----~~~----~~~~~------------------------------~gs~ilvTT 272 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDDVVQE-----ETI----RWAQE------------------------------LRLRCLVTT 272 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECCH-----HHH----HHHHH------------------------------TTCEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEECCCCc-----hhh----ccccc------------------------------CCCEEEEEc
Confidence 00 024 3789999999863 111 11110 013377776
Q ss_pred cCCCchhhhhhccceEEEEecCcCHHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHccCCH
Q 002241 440 NDLYAPALRSLRQIAKVHVFIQPSVSRVVSRLKHICNNESM-KTSSIALTTLAEYTECDI 498 (948)
Q Consensus 440 NDl~~p~Lr~Lr~~~~iI~F~~p~~~~l~~~L~~I~~~Egi-~id~~~L~~L~e~s~GDI 498 (948)
-+.... .........+.+...+.++-.+.+...+..... .-..+....|++.|+|--
T Consensus 273 R~~~v~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 273 RDVEIS--NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp SBGGGG--GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred CCHHHH--HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 654321 111123356788888888888888776533221 112346788888888854
No 133
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.06 E-value=0.00028 Score=69.63 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
-.+++|+|++|+||||+++.||+.+|+.++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 36899999999999999999999999988754
No 134
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.06 E-value=0.00026 Score=69.32 Aligned_cols=30 Identities=40% Similarity=0.682 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.+++|+||||+||||+|+.| +.+|+.++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 47899999999999999999 8899987764
No 135
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.04 E-value=0.0052 Score=62.49 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
|.|+|+||+|+|||||++.|.++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999988753
No 136
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.04 E-value=0.00038 Score=70.88 Aligned_cols=33 Identities=36% Similarity=0.505 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.+..++|+||||+||||+|+.||+.+|+.++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 346899999999999999999999999887654
No 137
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.04 E-value=0.00038 Score=70.97 Aligned_cols=31 Identities=29% Similarity=0.668 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++++|+||+|+||||+|+.|++.+|+.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4689999999999999999999999977665
No 138
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.04 E-value=0.0003 Score=69.54 Aligned_cols=29 Identities=28% Similarity=0.514 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
.+++|+||+|+||||++++||..+|+.++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57999999999999999999999997554
No 139
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.04 E-value=0.001 Score=74.17 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCCcceecCCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---------GYHVVEVNASDD 347 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd~ 347 (948)
|-+...+++|+||||+|||++|+.+|..+ |..++.+.....
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 45677899999999999999999999872 567888877654
No 140
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.03 E-value=0.0026 Score=69.87 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=48.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecCCCCCChH------------------HHHHHHHHHHhh
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNASDDRSSS------------------TIENKILDVVQM 363 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNaSd~rs~~------------------~~~~~I~~~~~~ 363 (948)
|-|.. +++|+||||+|||||+.-++.++ |-.++.+++-...... .++..-.+.+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45666 78999999999999988666543 6677777764322211 111110112211
Q ss_pred hcccccCCCcEEEecCcccccC
Q 002241 364 NSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 364 ~sv~~~~kp~iLIIDEID~l~~ 385 (948)
.......+|.+||||-|..+..
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 1112356899999999998863
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.03 E-value=0.00029 Score=70.07 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+.++|+||||+||||+++.||+.+|+.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 468999999999999999999999987664
No 142
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.99 E-value=0.00027 Score=70.06 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-HhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK-HCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk-elG~~viE 341 (948)
++++|+||||+||||+|+.|++ .+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 6899999999999999999999 56655443
No 143
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.99 E-value=0.00028 Score=70.37 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
..+++|+|+||+||||+|+.||+.+|+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 368999999999999999999999999877
No 144
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.98 E-value=0.0029 Score=68.50 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=29.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCCcceec
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVN 343 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiN 343 (948)
+-+...+++|.||||+|||||+..+|..+ |..|+.++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 44566899999999999999999988764 55565544
No 145
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.97 E-value=0.00034 Score=69.04 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+.++|+|+||+||||+++.||+.+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 579999999999999999999999987664
No 146
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.95 E-value=0.0022 Score=68.91 Aligned_cols=29 Identities=31% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
|-+...+++|+||+|+|||||+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45567899999999999999999888643
No 147
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.94 E-value=0.00043 Score=69.68 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
..+++|+||||+||||+++.||+.+|+.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 36899999999999999999999999876643
No 148
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00041 Score=69.50 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
..++|+|+||+||||+|+.||+.+|+.++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 689999999999999999999999986653
No 149
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.92 E-value=0.00045 Score=72.17 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
...|+++|.||||+||+|.|..||+++|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 34589999999999999999999999987654
No 150
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.92 E-value=0.00052 Score=68.65 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++++|+|+||+||||+++.||+.+|+.++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4689999999999999999999999976654
No 151
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.91 E-value=0.00042 Score=69.33 Aligned_cols=30 Identities=33% Similarity=0.644 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
..++|+||||+||||+++.||+.+|+.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 579999999999999999999999976554
No 152
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.89 E-value=0.0004 Score=69.50 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
..++|+||||+||||+++.||+.+|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999987
No 153
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.87 E-value=0.00049 Score=69.44 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
++++|+|+||+||||+++.||+.+|+.++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 6899999999999999999999999766543
No 154
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.86 E-value=0.00059 Score=69.41 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
..++++|+|++|+||||+++.||+.+|+.++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 347899999999999999999999999866543
No 155
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.85 E-value=0.0082 Score=77.03 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=78.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-------CCCcceecCCCCCChHHH--HHHHHHHHhhhc-----------------
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-------GYHVVEVNASDDRSSSTI--ENKILDVVQMNS----------------- 365 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-------G~~viEiNaSd~rs~~~~--~~~I~~~~~~~s----------------- 365 (948)
+++.|+|+.|+||||||..+++.. ...++.++.+.......+ ...+...+....
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 227 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRL 227 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHH
Confidence 689999999999999998887652 123446666553221111 111111111100
Q ss_pred ---ccccCCCcEEEecCcccccCCChhHHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCC
Q 002241 366 ---VMADSRPKCLVIDEIDGALGDGKGAVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDL 442 (948)
Q Consensus 366 ---v~~~~kp~iLIIDEID~l~~~~~~~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl 442 (948)
+....++.+||||+++.. .. +... ....-||+|+-+.
T Consensus 228 ~~~l~~~~~~~LlvlDd~~~~-----~~-------~~~~----------------------------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 228 RVLMLRKHPRSLLILDDVWDP-----WV-------LKAF----------------------------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHTSSSSCSCEEEEESCCCH-----HH-------HTTT----------------------------CSSCEEEEEESST
T ss_pred HHHHhccCCCEEEEEecCCCH-----HH-------HHhh----------------------------cCCCEEEEEcCCH
Confidence 001144889999999853 11 1100 0113366666554
Q ss_pred CchhhhhhccceEEEEecC-cCHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHccCCHH
Q 002241 443 YAPALRSLRQIAKVHVFIQ-PSVSRVVSRLKHICNNESMKTSSIALTTLAEYTECDIR 499 (948)
Q Consensus 443 ~~p~Lr~Lr~~~~iI~F~~-p~~~~l~~~L~~I~~~Egi~id~~~L~~L~e~s~GDIR 499 (948)
... .........+.+.. .+.++-.+.+...+.... .-..+....|++.|+|--=
T Consensus 268 ~~~--~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 268 SVT--DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp TTT--TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHTTTCHH
T ss_pred HHH--HhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHhCCCHH
Confidence 321 11122334566664 777777777776653322 2233568889999988543
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.85 E-value=0.0046 Score=71.47 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNa 344 (948)
|-+....++|.|+||+||||++..+|..+ |..|+.+..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 55667899999999999999999888753 566766654
No 157
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.84 E-value=0.0012 Score=72.52 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=32.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------------C----CCcceecCCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---------------G----YHVVEVNASDD 347 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---------------G----~~viEiNaSd~ 347 (948)
|-+...+++|+||||+|||++|..+|.++ | ..++.+.....
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 45677899999999999999999988753 3 56777776554
No 158
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.83 E-value=0.0024 Score=72.65 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCCcceecCCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---------GYHVVEVNASDD 347 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd~ 347 (948)
|.+...+++|+||||+|||||++.+|-.. +..++.++..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 45667899999999999999999776432 344777776553
No 159
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.83 E-value=0.0014 Score=73.15 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=32.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCCcceecCCC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---------GYHVVEVNASD 346 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---------G~~viEiNaSd 346 (948)
|.+...++.|+||+|+|||||++.+|..+ |-.++.|+..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 45677899999999999999999999876 23567776644
No 160
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.83 E-value=0.00071 Score=67.50 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiN 343 (948)
...++|+|++|+||||+++.|+..+ |+.++.++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 4689999999999999999999987 98888775
No 161
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.82 E-value=0.00067 Score=67.29 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
..+++|+||+|+||||++++|+..+|+.++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3689999999999999999999999865543
No 162
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.81 E-value=0.00054 Score=68.83 Aligned_cols=35 Identities=37% Similarity=0.545 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
...+++|.||+|+||||++++||...+...+.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 45789999999999999999999987666566654
No 163
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.80 E-value=0.0015 Score=74.64 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=36.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHH
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDV 360 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~ 360 (948)
.+.+.+++|+||||+||||+|+.+++.+|+.++. ..+.+....+...+...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~--~D~~~~~~~~~~~~~~~ 305 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN--RDTLGSWQRCVSSCQAA 305 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC--GGGSCSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc--cchHHHHHHHHHHHHHH
Confidence 4456899999999999999999999999876554 33344433343333333
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.79 E-value=0.00071 Score=68.99 Aligned_cols=31 Identities=32% Similarity=0.508 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
...+++|.||+|+||||++++||..+|+.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3578999999999999999999999986444
No 165
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.77 E-value=0.0006 Score=70.92 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
...++|+||||+||||+++.||+.+|+.++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 36899999999999999999999999876643
No 166
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.77 E-value=0.00069 Score=66.56 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++|+|++|+||||+++.||+.+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58899999999999999999999988764
No 167
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.76 E-value=0.00057 Score=70.70 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
..++|.|+||+||||+++.||+.+|+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5789999999999999999999999877654
No 168
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.75 E-value=0.00074 Score=69.47 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.++|+||||+||||+|+.||+++|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999876644
No 169
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.00075 Score=69.77 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
..++|.||||+||||+++.||+.+|+.++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 5799999999999999999999999866543
No 170
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.75 E-value=0.00077 Score=69.26 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.++|+||||+||||+|+.||+++|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877644
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.74 E-value=0.0028 Score=84.37 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=52.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCCCCCChHHHHH-----------------HHHHHHhhhcc
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNASDDRSSSTIEN-----------------KILDVVQMNSV 366 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaSd~rs~~~~~~-----------------~I~~~~~~~sv 366 (948)
+.+...++||+|||||||||||..++.+ .|..++.+.+......-.... ....... .+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~--~l 1154 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD--AL 1154 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH--HH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHH--HH
Confidence 4677899999999999999999988876 388899888876433211100 0011110 11
Q ss_pred cccCCCcEEEecCcccccC
Q 002241 367 MADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 367 ~~~~kp~iLIIDEID~l~~ 385 (948)
....++.+||||++..+..
T Consensus 1155 ~~~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1155 ARSGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCC
T ss_pred HHhCCCCEEEECCcccccc
Confidence 1245799999999998843
No 172
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.72 E-value=0.00075 Score=69.88 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
..++|.||||+||||+++.||+.+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 679999999999999999999999975543
No 173
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.68 E-value=0.001 Score=72.25 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
+.+++|+||||+||||+|+.|+++++..++.|++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4789999999999999999999998544566665
No 174
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.68 E-value=0.0034 Score=82.55 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=50.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCC---------------------ChHHHHHHHHHHHh
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDR---------------------SSSTIENKILDVVQ 362 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~r---------------------s~~~~~~~I~~~~~ 362 (948)
|-+...+++|+||||+||||||..+|.++ |..++.++.-... +...+...+.....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46778999999999999999999998764 5677776654322 12222222322221
Q ss_pred hhcccccCCCcEEEecCcccccC
Q 002241 363 MNSVMADSRPKCLVIDEIDGALG 385 (948)
Q Consensus 363 ~~sv~~~~kp~iLIIDEID~l~~ 385 (948)
...+.+||||.+..+..
T Consensus 808 ------~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 ------SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp ------HTCCSEEEESCSTTCCC
T ss_pred ------ccCCCEEEEechhhhcc
Confidence 35789999999998863
No 175
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.67 E-value=0.0032 Score=64.57 Aligned_cols=32 Identities=31% Similarity=0.335 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCcceec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVN 343 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiN 343 (948)
-.+++++++|.||||+|-.+|-. .|+.|+.+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46778888899999999988875 388888773
No 176
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.67 E-value=0.00083 Score=71.36 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~ 347 (948)
+..++|+||||+||||+|+.|++.++..++.++.-..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4789999999999999999999999866666665443
No 177
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.66 E-value=0.0028 Score=64.87 Aligned_cols=74 Identities=19% Similarity=0.208 Sum_probs=48.0
Q ss_pred CCceEEEEcCCCCcHH-HHHHHHHHH--hCCCcceecCC-CCCChHHHHHHHHHHHhh------hccc-ccCCCcEEEec
Q 002241 310 EQKVLLLCGPPGLGKT-TLAHVAAKH--CGYHVVEVNAS-DDRSSSTIENKILDVVQM------NSVM-ADSRPKCLVID 378 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKT-TLA~~lAke--lG~~viEiNaS-d~rs~~~~~~~I~~~~~~------~sv~-~~~kp~iLIID 378 (948)
..+++++|||.|+||| .|.+++.+. .|..|+.+.+. |.|....+...+...... ..+. ......||+||
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlID 98 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGID 98 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEES
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEE
Confidence 3589999999999999 788888764 58889888765 445433333333221110 0000 11346799999
Q ss_pred Ccccc
Q 002241 379 EIDGA 383 (948)
Q Consensus 379 EID~l 383 (948)
|+.-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99977
No 178
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.63 E-value=0.001 Score=69.49 Aligned_cols=31 Identities=35% Similarity=0.388 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
..++|.|+||+||||+|+.||+++|+.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 6799999999999999999999999776543
No 179
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.60 E-value=0.0012 Score=66.20 Aligned_cols=31 Identities=32% Similarity=0.344 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceec
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVN 343 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiN 343 (948)
.++|+|++|+||||+++.|++++ |+.++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 58899999999999999999998 89888664
No 180
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.0056 Score=63.65 Aligned_cols=38 Identities=39% Similarity=0.407 Sum_probs=28.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKH----CGYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAke----lG~~viEiNa 344 (948)
|-+...+++|+|+||+|||++|.-+|.+ .|..++.+..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4577789999999999999999866543 3666665543
No 181
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.58 E-value=0.0011 Score=70.13 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
+..++|+||||+||||+|+.|++++|+.++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 46899999999999999999999998766643
No 182
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.58 E-value=0.0095 Score=68.59 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=30.5
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecC
Q 002241 306 TGPPEQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNA 344 (948)
Q Consensus 306 ~g~p~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNa 344 (948)
.|-+....++|+|+||+||||+|..+|..+ |..|+.+..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 356677899999999999999999887653 556666544
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.57 E-value=0.0013 Score=67.95 Aligned_cols=30 Identities=33% Similarity=0.626 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
..+.|.||+|+||||+++.||+.+|+.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999976553
No 184
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.56 E-value=0.00095 Score=68.08 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
++.++|+|++|+||||+++.||+++|+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999998765443
No 185
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.55 E-value=0.00073 Score=67.54 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG---YHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG---~~viEi 342 (948)
+.++|+||||+||||+++.||++++ +.+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 4789999999999999999999875 345544
No 186
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.53 E-value=0.0012 Score=68.34 Aligned_cols=28 Identities=43% Similarity=0.714 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
+|+|.||||+||+|.|..||+++|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4788999999999999999999987654
No 187
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.53 E-value=0.0013 Score=67.83 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.++|+||||+||||+|+.||+.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877654
No 188
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.53 E-value=0.0054 Score=64.51 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcceecCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS 345 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaS 345 (948)
.+||+||+|+|||.++-+++.+++..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999988777777654
No 189
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.52 E-value=0.0015 Score=66.27 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
+++.|+|++|+||||+++.||+.+|+.++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 4899999999999999999999999776653
No 190
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.52 E-value=0.0013 Score=66.52 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
.++|.|++|+||||+++.||+.+|+.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5889999999999999999999998654
No 191
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.52 E-value=0.0016 Score=69.50 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH---hCCCcceec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVN 343 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiN 343 (948)
..++|+|+||+||||+|+.||+. .|+.++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 68999999999999999999998 788877444
No 192
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.52 E-value=0.0011 Score=67.04 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-GYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-G~~viEiNa 344 (948)
+.++|+|++|+||||+++.||+.+ |+.++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 689999999999999999999998 677766543
No 193
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.50 E-value=0.0026 Score=63.91 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
.++|+|++|+||||+++.|++.+ |+.++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 58899999999999999999998 999886644
No 194
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.49 E-value=0.0017 Score=66.13 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceec
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVN 343 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiN 343 (948)
...++.|.||+|+||||++++||..+ |+.++.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 34789999999999999999999988 55434454
No 195
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.45 E-value=0.0017 Score=66.02 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
..++|+|+||+||||+++.||++++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 689999999999999999999998874
No 196
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.43 E-value=0.0012 Score=67.01 Aligned_cols=30 Identities=33% Similarity=0.435 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
..+.|+||+|+||||+++.||+ +|+.++..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 3689999999999999999999 88877654
No 197
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.42 E-value=0.001 Score=79.35 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNa 344 (948)
.++++|+|||||||||++..++.. .|+.|+-...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 478999999999999999998875 4777765533
No 198
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.42 E-value=0.014 Score=64.14 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=29.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceec
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVN 343 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiN 343 (948)
|-+....++|+|+||+||||+|..+|.++ |..++.+.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 55667899999999999999999988764 44555544
No 199
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.41 E-value=0.0015 Score=67.91 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.++|.||||+||||+++.||+.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 589999999999999999999999765543
No 200
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.39 E-value=0.0017 Score=68.40 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
+.++.|.||+|+||||+++.||+++|+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3589999999999999999999999986654
No 201
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.38 E-value=0.0013 Score=72.96 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
.++++|.||+|+|||||+..||+++|.++|..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 4689999999999999999999999876655443
No 202
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.37 E-value=0.002 Score=67.80 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
..+++|.||+|+||||++++||+.+|+..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 468999999999999999999999987543
No 203
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.35 E-value=0.0021 Score=64.46 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.++++|+||+|+|||||++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999999763
No 204
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.34 E-value=0.012 Score=66.01 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.+++|+||+|+|||||+++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999999998865
No 205
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.34 E-value=0.0016 Score=66.43 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+.+++|+|++|+||||+++.||++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999864
No 206
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.33 E-value=0.002 Score=65.14 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
..++.|+|++|+||||+++.||+. |+.++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 468999999999999999999998 877664
No 207
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.32 E-value=0.0017 Score=66.20 Aligned_cols=29 Identities=34% Similarity=0.477 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++.|+||+|+||||+++.+|. +|+.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 4788999999999999999998 8877654
No 208
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.32 E-value=0.0019 Score=68.84 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
...++|.||+|+||||++++||+.+|+.++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 36899999999999999999999999987764
No 209
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.29 E-value=0.0021 Score=70.49 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
.+++++|+||+|+||||||..||++++..++..++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45789999999999999999999999876655433
No 210
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.29 E-value=0.0019 Score=65.98 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
+..++.|+|++|+||||+++.+|+.+|+.++..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 456788999999999999999999999877664
No 211
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.27 E-value=0.0041 Score=61.89 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.4
Q ss_pred CceEEEEcCCCCcHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHV 330 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~ 330 (948)
..++.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 47899999999999999994
No 212
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.26 E-value=0.001 Score=74.27 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDD 347 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~ 347 (948)
..++|.||+|+||||++++||+.+++.++++|+++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~ 60 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHP 60 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeeccccc
Confidence 568999999999999999999999999988887654
No 213
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.23 E-value=0.015 Score=59.23 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
.++.+++||.|+||||++--+|+.+ |+.|+-+..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~ 44 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKP 44 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 4799999999999999988888764 888887764
No 214
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.21 E-value=0.0026 Score=67.55 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVV 340 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~vi 340 (948)
..++.|.||+|+||||++++||+.+|+.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 468999999999999999999999998654
No 215
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.17 E-value=0.0046 Score=74.18 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.+.++++|||||||||++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3789999999999999888766543
No 216
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0029 Score=66.18 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
...++.|+|++|+||||+++.||+.+|+.++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 44689999999999999999999999976654
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.13 E-value=0.0028 Score=64.70 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.++++|+||+|+||||+++.|++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 47899999999999999999999874
No 218
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.12 E-value=0.0038 Score=62.52 Aligned_cols=33 Identities=42% Similarity=0.565 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiN 343 (948)
..+++|+|++|+||||+++.+|..+ |+.++.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 4789999999999999999999986 45555553
No 219
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.05 E-value=0.0033 Score=64.55 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.++++|+||+|+||||+++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999999874
No 220
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.05 E-value=0.0032 Score=64.84 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.++.|+|++|+||||+++.||+ +|+.++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 6899999999999999999998 88876654
No 221
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.05 E-value=0.0033 Score=66.54 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHV 339 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~v 339 (948)
..++.|+||+|+||||+|+.||+.+|+.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 46899999999999999999999999864
No 222
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.04 E-value=0.034 Score=61.47 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+++|.||+|+|||||+++++..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 6899999999999999999998763
No 223
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.03 E-value=0.0025 Score=69.02 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCCcc
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-GYHVV 340 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-G~~vi 340 (948)
++++|+||||+||||+|+.|++.+ |+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 689999999999999999999974 76555
No 224
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.00 E-value=0.0029 Score=69.48 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=80.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCC-CCChHHHHHHHHHHHhhhcccccCCCcEEEecCcccccC-CChh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASD-DRSSSTIENKILDVVQMNSVMADSRPKCLVIDEIDGALG-DGKG 389 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd-~rs~~~~~~~I~~~~~~~sv~~~~kp~iLIIDEID~l~~-~~~~ 389 (948)
++++|+||+|+||||||..||+.++..++..+.-- .++.+....+... -.. .+- .--+||.++---. +...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~-~E~-----~gv-phhlid~~~~~e~~s~~~ 76 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITA-EEM-----DGV-PHHLIDIKDPSESFSVAD 76 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCH-HHH-----TTC-CEESSSCBCTTSCCCHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCH-HHH-----cCC-CEEEeccCChhhhccHHH
Confidence 68999999999999999999999886554333210 0110000000000 000 111 2345555542211 1123
Q ss_pred HHHHHHHHHHhhhccccccccccccCchhhhhhccccccccCCCcEEEEecCCCchhhhhhccceEEEEecCc-CHHHHH
Q 002241 390 AVEVILKMVSAERKSNTAKENVAKEDQPEKISKKKGCKKASLLRPVICICNDLYAPALRSLRQIAKVHVFIQP-SVSRVV 468 (948)
Q Consensus 390 ~~~~Ll~li~~~~~~~~~~~~~~~~~~~~k~~~kk~~~~~~~~rPII~icNDl~~p~Lr~Lr~~~~iI~F~~p-~~~~l~ 468 (948)
+.......+..-.. .-+.|||+=-..+|-.+|-.- +.|.+. ....+.
T Consensus 77 F~~~a~~~i~~i~~--------------------------~gk~pIlVGGTglYi~aLl~g------~~~~~~~~~~~~R 124 (322)
T 3exa_A 77 FQDLATPLITEIHE--------------------------RGRLPFLVGGTGLYVNAVIHQ------FNLGDIRADEDYR 124 (322)
T ss_dssp HHHHHHHHHHHHHH--------------------------TTCEEEEESCCHHHHHHHHHT------CCCCCCBCCHHHH
T ss_pred HHHHHHHHHHHHHh--------------------------CCCcEEEEcCcHHHHHHHHcC------CcCCCCCCCHHHH
Confidence 44444444432110 113566654555664443211 234333 334677
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHH--------HccCCHHHHHHHHHHHHhcCcc
Q 002241 469 SRLKHICNNESMKTSSIALTTLAE--------YTECDIRSCLNTLQFLDKKKEI 514 (948)
Q Consensus 469 ~~L~~I~~~Egi~id~~~L~~L~e--------~s~GDIR~aIn~LQ~~~~~~~~ 514 (948)
..|...+..+|.. .....|.+ ...+|.|..+..|+.+...+..
T Consensus 125 ~~l~~~~~~~g~~---~L~~~L~~~DP~~A~~i~pnd~~Ri~RALEV~~~TG~~ 175 (322)
T 3exa_A 125 HELEAFVNSYGVQ---ALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKT 175 (322)
T ss_dssp HHHHHHHHHSCHH---HHHHHHHTTCHHHHTTSCTTCHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhcCHH---HHHHHHHhhCHHHHhhcCcccHHHHHHHHHHHHHHCCC
Confidence 7777777766641 22222221 1368999999999988665543
No 225
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.00 E-value=0.012 Score=65.36 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
|-.....++|.|+||+||||+|.-+|.++ |..|+.+..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45566899999999999999999888763 666666544
No 226
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.99 E-value=0.0033 Score=63.11 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
.+++|.||+|+||||++++||...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 57899999999999999999986643
No 227
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.97 E-value=0.0026 Score=64.92 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC-GYHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel-G~~viEiN 343 (948)
..++.|+||+|+||||+++.|++.+ ++.++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 4688999999999999999999987 66555443
No 228
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.96 E-value=0.021 Score=65.59 Aligned_cols=39 Identities=36% Similarity=0.432 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRS 349 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs 349 (948)
+.+++|+||+|+||||++..||..+ |+.|+-+.+...|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 5899999999999999999988764 88888777654444
No 229
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.95 E-value=0.027 Score=58.37 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=42.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCC-CCCChH-HHHHHHHHHHhh------hccc--ccCCCcEEEe
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNAS-DDRSSS-TIENKILDVVQM------NSVM--ADSRPKCLVI 377 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaS-d~rs~~-~~~~~I~~~~~~------~sv~--~~~kp~iLII 377 (948)
.++.+++||.|+||||.+--+|.. .|..|+-+... |.|... .+..++...... ..+. ......||+|
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 478899999999999998877765 48899888765 444332 233333111100 0111 1124789999
Q ss_pred cCccccc
Q 002241 378 DEIDGAL 384 (948)
Q Consensus 378 DEID~l~ 384 (948)
||+..+.
T Consensus 108 DEaQF~~ 114 (214)
T 2j9r_A 108 DEVQFFD 114 (214)
T ss_dssp CCGGGSC
T ss_pred ECcccCC
Confidence 9998764
No 230
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.94 E-value=0.0037 Score=67.61 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
...++.|+|++|+||||+|+.|+ ++|+.++..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 34689999999999999999999 688876554
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.90 E-value=0.019 Score=65.88 Aligned_cols=38 Identities=39% Similarity=0.413 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDR 348 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~r 348 (948)
+++++|+||+|+||||++..||..+ |..|+-+.+...|
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 5899999999999999999998764 8888777664433
No 232
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.88 E-value=0.0036 Score=69.50 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
++++|+||+|+||||+|..||+++|..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 6899999999999999999999998554443
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.86 E-value=0.0046 Score=63.49 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiN 343 (948)
..+++|+|++|+||||+++.|++.+ |+.++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4789999999999999999999976 45566665
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.86 E-value=0.017 Score=63.24 Aligned_cols=35 Identities=37% Similarity=0.381 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
+++++|.||+|+||||++..+|..+ |..|+-+.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4799999999999999999999764 6677666553
No 235
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.86 E-value=0.0041 Score=63.85 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
.++.|+|++|+||||+++.||+.+|+.++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4789999999999999999999999876653
No 236
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.85 E-value=0.0045 Score=62.67 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|+||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 237
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.82 E-value=0.0038 Score=72.00 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=47.0
Q ss_pred eEEEEcCCCCcHHHHHHHH-HHHhCCCcceecCCCCCChHHHHHHHHHHHhhhccc----ccCCCcEEEecCcccccCCC
Q 002241 313 VLLLCGPPGLGKTTLAHVA-AKHCGYHVVEVNASDDRSSSTIENKILDVVQMNSVM----ADSRPKCLVIDEIDGALGDG 387 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~l-AkelG~~viEiNaSd~rs~~~~~~~I~~~~~~~sv~----~~~kp~iLIIDEID~l~~~~ 387 (948)
++||.|+||+ ||++|+.+ ++-+. ..+.... ...+...+...+.+... ..+. ......+++||||+.+.
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~p-R~~ft~g-~~ss~~gLt~s~r~~tG-~~~~~G~l~LAdgGvl~lDEIn~~~--- 313 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAP-RGVYVDL-RRTELTDLTAVLKEDRG-WALRAGAAVLADGGILAVDHLEGAP--- 313 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCS-SEEEEEG-GGCCHHHHSEEEEESSS-EEEEECHHHHTTTSEEEEECCTTCC---
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCC-CeEEecC-CCCCccCceEEEEcCCC-cccCCCeeEEcCCCeeehHhhhhCC---
Confidence 7999999999 99999999 66542 2222211 00000000000000000 0000 01235899999999984
Q ss_pred hhHHHHHHHHHHhhhc
Q 002241 388 KGAVEVILKMVSAERK 403 (948)
Q Consensus 388 ~~~~~~Ll~li~~~~~ 403 (948)
...+.+|++.++....
T Consensus 314 ~~~qsaLlEaMEe~~V 329 (506)
T 3f8t_A 314 EPHRWALMEAMDKGTV 329 (506)
T ss_dssp HHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHhCCcE
Confidence 3677888888876543
No 238
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.81 E-value=0.0052 Score=63.12 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++.|.||+||||||+++.||+.+|+.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 589999999999999999999999999873
No 239
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.81 E-value=0.007 Score=61.38 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+.+|+++|+|+|||.++-.++.++
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 569999999999999988777653
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.80 E-value=0.0054 Score=62.01 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
..++.|.||+|+|||||+++|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999999853
No 241
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.76 E-value=0.034 Score=64.93 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNa 344 (948)
|-+...+++|.|+||+||||+|.-+|.++ |..|+.+..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 56778899999999999999999888764 556666544
No 242
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.72 E-value=0.027 Score=61.37 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH----hCCCcceecCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH----CGYHVVEVNASDDR 348 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke----lG~~viEiNaSd~r 348 (948)
+++++|.||+|+||||++..+|.. .|..|..+.+...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 479999999999999999999864 47777777664433
No 243
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.69 E-value=0.025 Score=59.31 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH---hCCCcceecCC-CCCChHHHHHHHHHHHhhhcc------c-ccCCCcEEEec
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH---CGYHVVEVNAS-DDRSSSTIENKILDVVQMNSV------M-ADSRPKCLVID 378 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke---lG~~viEiNaS-d~rs~~~~~~~I~~~~~~~sv------~-~~~kp~iLIID 378 (948)
..++.+++||.|+||||.+--++.. .|..|+-+... |.|....+..++........+ . ......||+||
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViID 97 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGID 97 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTTCSEEEES
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEE
Confidence 3579999999999999876655543 57888877744 444333333333111100000 0 01457899999
Q ss_pred CcccccCCChhHHHHHHHHHH
Q 002241 379 EIDGALGDGKGAVEVILKMVS 399 (948)
Q Consensus 379 EID~l~~~~~~~~~~Ll~li~ 399 (948)
|+..+. + +..+++++.
T Consensus 98 EaQF~~----~-v~el~~~l~ 113 (234)
T 2orv_A 98 EGQFFP----D-IVEFCEAMA 113 (234)
T ss_dssp SGGGCT----T-HHHHHHHHH
T ss_pred chhhhh----h-HHHHHHHHH
Confidence 998773 2 555555554
No 244
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.59 E-value=0.046 Score=62.94 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
|-+....++|.|+||+||||+|.-+|.++ |..|+.+..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 55667899999999999999998887764 666666544
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.56 E-value=0.0064 Score=61.12 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+++.|.||+|+|||||+++|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998753
No 246
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.53 E-value=0.025 Score=57.55 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++|.|++|+|||||+..++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999864
No 247
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.53 E-value=0.012 Score=61.65 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CCccee
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG--YHVVEV 342 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG--~~viEi 342 (948)
....++|.||+|+||||+++.|++.++ +.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 457899999999999999999999986 555433
No 248
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.51 E-value=0.018 Score=72.29 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=33.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH------hCCCcceecCCCCCChHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH------CGYHVVEVNASDDRSSSTIENKI 357 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke------lG~~viEiNaSd~rs~~~~~~~I 357 (948)
.+++.|+||.|+||||||..+++. +...++.++.+.......+...|
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 479999999999999999988853 34456677766554444443333
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.39 E-value=0.0089 Score=61.35 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+.++|+||+|+|||||++.|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998864
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.39 E-value=0.01 Score=60.42 Aligned_cols=34 Identities=32% Similarity=0.313 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceec
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVN 343 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiN 343 (948)
...++.|+||+|+||||+++.|+..+ |..++.++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 34789999999999999999999875 66665543
No 251
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.38 E-value=0.0068 Score=61.84 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
..++.|.||+|+|||||+++|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36889999999999999999999887
No 252
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.37 E-value=0.0073 Score=68.49 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
++++|+||+|+||||||..||+.++..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 689999999999999999999999876543
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.29 E-value=0.0087 Score=61.01 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.+.+.|.||+|+|||||+++|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999875
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.19 E-value=0.0097 Score=60.94 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
...++.|.||+|+|||||+++|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346889999999999999999999874
No 255
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.14 E-value=0.0064 Score=61.94 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
++++|.||+|+||||+++.|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999874
No 256
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.13 E-value=0.011 Score=61.88 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
.++.|.|++||||||+++.||+.+|+.++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 589999999999999999999999998764
No 257
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.02 E-value=0.064 Score=63.02 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=29.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 307 GPPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 307 g~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
+-+...+++|.||+|+|||||++.+|... |..++.+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 44667899999999999999999998753 445555443
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.97 E-value=0.014 Score=60.74 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+...++.|.||.|+|||||+++|+....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4457999999999999999999998764
No 259
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.96 E-value=0.014 Score=61.35 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
..++-|.||.|+||||++++|+..+|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4688899999999999999999988854
No 260
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.87 E-value=0.016 Score=59.25 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
...++.|.||+|+|||||+++|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 347899999999999999999999763
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.85 E-value=0.015 Score=60.29 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||+|+|||||+++|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999999976
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.80 E-value=0.011 Score=60.86 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+.++|+||+|+||||||..||+..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 37899999999999999999998754
No 263
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.78 E-value=0.02 Score=68.65 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceec
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVN 343 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiN 343 (948)
...+++|+|++|+||||+|+.||+.+ |+.++.++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 35789999999999999999999998 98877664
No 264
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.75 E-value=0.016 Score=60.79 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCccee
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEV 342 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEi 342 (948)
--|-|.||||+||||+|..||+.+|+.++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3477999999999999999999999876643
No 265
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.73 E-value=0.025 Score=58.59 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=34.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCChHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSSSTIENKILDVVQ 362 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~~~~~~~I~~~~~ 362 (948)
...++|.||+|+||||++..|++.+ |+.++...... ...+-+.|++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~---~~~~g~~i~~~l~ 57 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG---GTPLAERIRELLL 57 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC---SSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC---CCHHHHHHHHHHh
Confidence 4789999999999999999999976 56766554332 2233344555543
No 266
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.69 E-value=0.0066 Score=65.98 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CCcceecCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG---YHVVEVNASD 346 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG---~~viEiNaSd 346 (948)
+.++.|+||+|+||||+|+.|++.+| +.+..+++.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 36899999999999999999999876 4444455433
No 267
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.62 E-value=0.03 Score=58.69 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-------CCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC-------GYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel-------G~~viEiNa 344 (948)
.+.++|.||+|+||||+++.|++.+ |+.|+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re 65 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE 65 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecC
Confidence 4789999999999999999999986 777765443
No 268
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.47 E-value=0.013 Score=67.18 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAk 333 (948)
.+..++.++.|+|||||||++..+++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 34568999999999999999977764
No 269
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.46 E-value=0.024 Score=55.93 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999987
No 270
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.38 E-value=0.023 Score=60.70 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...+++|+||+|+|||||+++++..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45789999999999999999999864
No 271
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.35 E-value=0.18 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.-++|.|++|+|||||+..+...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 56899999999999999999864
No 272
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.35 E-value=0.026 Score=56.64 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceec
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVN 343 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiN 343 (948)
..++++|+||+|+|||||+..++..+ |+.+-.++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 34789999999999999999998864 56554444
No 273
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.35 E-value=0.014 Score=60.67 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=16.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHH-HHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAA-KHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lA-kel 335 (948)
..++.|.||+|+|||||+++|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4789999999999999999999 765
No 274
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.29 E-value=0.026 Score=66.23 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+.+++|+||+|+||||++++++..+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999999999999999998763
No 275
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.19 E-value=0.017 Score=68.03 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
+.+++|+|.||+||||+|+.||+.+|+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999998543
No 276
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.17 E-value=0.024 Score=59.25 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-GY 337 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-G~ 337 (948)
+.++|.|++|+||||+++.||+.+ ++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 689999999999999999999998 44
No 277
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.17 E-value=0.044 Score=56.88 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=45.8
Q ss_pred CceEEEEcCCCCcHHH-HHHHHHH--HhCCCcceecCC-CCCChH-HHHHHHHHHHh------hhccc--ccCCCcEEEe
Q 002241 311 QKVLLLCGPPGLGKTT-LAHVAAK--HCGYHVVEVNAS-DDRSSS-TIENKILDVVQ------MNSVM--ADSRPKCLVI 377 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTT-LA~~lAk--elG~~viEiNaS-d~rs~~-~~~~~I~~~~~------~~sv~--~~~kp~iLII 377 (948)
..+.+++||-|+|||| |.+.+-+ ..|..++-+++. |.|... .+..++..... ...+. -..+..||+|
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~I 107 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGI 107 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEE
Confidence 4789999999999999 4455432 357888888764 444321 12111110000 00111 1246789999
Q ss_pred cCcccccCCChhHHHHHHHHH
Q 002241 378 DEIDGALGDGKGAVEVILKMV 398 (948)
Q Consensus 378 DEID~l~~~~~~~~~~Ll~li 398 (948)
||+.-+.. ..++.+..+.
T Consensus 108 DEaQFf~~---~~v~~l~~la 125 (219)
T 3e2i_A 108 DEVQFFDD---EIVSIVEKLS 125 (219)
T ss_dssp CCGGGSCT---HHHHHHHHHH
T ss_pred echhcCCH---HHHHHHHHHH
Confidence 99987642 4555555544
No 278
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.16 E-value=0.077 Score=62.05 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRS 349 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs 349 (948)
.++++|+|++|+||||++..||..+ |..|.-+.+-..|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 4689999999999999999999765 88888777644343
No 279
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.13 E-value=0.03 Score=60.83 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+.++.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346889999999999999999999875
No 280
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.11 E-value=0.18 Score=50.56 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.8
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHV 330 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~ 330 (948)
+.+++++|+|+|||..+-+
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 5799999999999975543
No 281
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.09 E-value=0.034 Score=55.56 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
+++.|+|++|+||||++..++..+ |+.|..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 689999999999999999999864 677665553
No 282
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.09 E-value=0.066 Score=55.61 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=34.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQ 362 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~ 362 (948)
.+.++|.|++|+||||+++.+++.++..+..+.-. .....+-..|+..+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep--~~~t~~g~~ir~~l~ 54 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFP--ERSTRIGGLINEYLT 54 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESS--CTTSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccceEEEec--CCCChHHHHHHHHHH
Confidence 47899999999999999999999998744333322 112234445555543
No 283
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.08 E-value=0.056 Score=60.88 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..-++|.||+|+|||||++.||+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3578999999999999999999864
No 284
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.02 E-value=0.012 Score=62.59 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCCcc
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC-GYHVV 340 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel-G~~vi 340 (948)
...++|.|++|+||||+++.||+.+ ++.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4789999999999999999999998 54433
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.02 E-value=0.031 Score=61.15 Aligned_cols=29 Identities=31% Similarity=0.599 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+...++.|.||+|+|||||+++|+..+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 45568999999999999999999999873
No 286
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.99 E-value=0.05 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
--++|.|++|+|||||++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358899999999999999887653
No 287
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.84 E-value=0.039 Score=60.88 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+.++.|.||+|+||||++++|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46888999999999999999999875
No 288
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.76 E-value=0.14 Score=52.86 Aligned_cols=18 Identities=33% Similarity=0.229 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAH 329 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~ 329 (948)
+.+++++|+|+|||.++-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 569999999999998644
No 289
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.72 E-value=0.042 Score=60.09 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4789999999999999999999865
No 290
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.71 E-value=0.16 Score=63.41 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAk 333 (948)
+...+++|+||.|+||||+.+.+|.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3457999999999999999998873
No 291
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.67 E-value=0.038 Score=60.62 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+.++.|.||+|+|||||+++|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 347899999999999999999999763
No 292
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.62 E-value=0.044 Score=57.72 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYH 338 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~ 338 (948)
..+.++|.||+|+||||++..|++.+ |+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35789999999999999999999876 566
No 293
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.55 E-value=0.041 Score=60.12 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
..++.|.||+|+|||||+++|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999999999999999876
No 294
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.49 E-value=0.042 Score=57.41 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCCcce
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVE 341 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel----G~~viE 341 (948)
..+.++|.|++|+||||+++.|++.+ |+.++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 45789999999999999999999875 446665
No 295
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.45 E-value=0.068 Score=56.48 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=33.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDVVQ 362 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~~~ 362 (948)
.++.|+|++|+||||++..++.++|+.++. -++.+...+...+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~-------~~~~~~~~~~~~~g 45 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQ-------LAGPIKDALAYAWG 45 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECC-------TTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEe-------cChHHHHHHHHHcc
Confidence 468899999999999999999999987632 23456666666554
No 296
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.42 E-value=0.043 Score=61.74 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...+++|+||+|+||||++++++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999999999864
No 297
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.40 E-value=0.17 Score=50.86 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=16.3
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVA 331 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~l 331 (948)
+.+++++|+|+|||.++-..
T Consensus 39 ~~~li~~~TGsGKT~~~~~~ 58 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALP 58 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHH
Confidence 56999999999999874433
No 298
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.37 E-value=0.044 Score=54.97 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
.+.+||+|++|+||||+|..+.+. |+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 379999999999999999999874 543
No 299
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.29 E-value=0.057 Score=55.95 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=33.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CC-CcceecCCCCCChHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GY-HVVEVNASDDRSSSTIENKILDVVQ 362 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~-~viEiNaSd~rs~~~~~~~I~~~~~ 362 (948)
+.++|.|++|+||||+++.|++.+ |+ .++..... +...+-+.|++.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep---~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP---GGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS---CSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC---CCCHHHHHHHHHHh
Confidence 689999999999999999999876 66 44333222 22334455555554
No 300
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.29 E-value=0.04 Score=57.82 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34789999999999999999999654
No 301
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.22 E-value=0.052 Score=60.00 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
.+.++.|.||+|+||||+++.||..+ +..|.....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 45799999999999999999999864 555554433
No 302
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.18 E-value=0.1 Score=60.34 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++|.||+|+|||||+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 468899999999999999888754
No 303
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.18 E-value=0.31 Score=61.08 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lA 332 (948)
...+++|+||.|+||||+.+.+|
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999885
No 304
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.17 E-value=0.05 Score=59.40 Aligned_cols=36 Identities=33% Similarity=0.426 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDD 347 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~ 347 (948)
+.++.|.||.|+||||+++.||..+ +..|. +++.|.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~-l~g~d~ 138 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-MAAGDT 138 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EECCCC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE-EEeecc
Confidence 4799999999999999999999865 44544 444443
No 305
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.07 E-value=0.046 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44789999999999999999999753
No 306
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.02 E-value=0.049 Score=65.71 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
.+.||.||||||||+++-.+..++ |..|+-...
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 489999999999997654443332 444444333
No 307
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.01 E-value=0.25 Score=53.78 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC-----GYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel-----G~~viEiNa 344 (948)
+.+++.+|+|+|||.++-..+.++ +..++.+-+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 579999999999999876655543 444554443
No 308
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.96 E-value=0.04 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+|||||+++++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 309
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.87 E-value=0.081 Score=58.22 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
.++++|+||+|+||||++..||..+ |..|+-+.+.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4799999999999999999998754 7777766653
No 310
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.84 E-value=0.051 Score=64.60 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG----YHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG----~~viEiN 343 (948)
..+++|+|++|+||||+|++|++.++ +.++.++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 36789999999999999999999976 5666665
No 311
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.83 E-value=0.048 Score=62.59 Aligned_cols=37 Identities=38% Similarity=0.412 Sum_probs=30.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDD 347 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~ 347 (948)
+++++|+|++|+||||++..||..+ |+.|+-+.+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3689999999999999999998865 688877776433
No 312
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.79 E-value=0.062 Score=61.38 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
..+++|+||+|+|||||+++++..+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999999874
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.78 E-value=0.059 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.++.|.||.|+|||||++++|.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999754
No 314
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.76 E-value=0.053 Score=57.94 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999998754
No 315
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.74 E-value=0.11 Score=67.94 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 309 PEQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 309 p~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+....+.|.||.|+|||||+++|.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 4567899999999999999999998763
No 316
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=92.73 E-value=0.2 Score=52.15 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=16.0
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHV 330 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~ 330 (948)
+.+++++|+|+|||.++-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 5799999999999987543
No 317
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.70 E-value=0.048 Score=55.09 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=31.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcceecCCCCCChHHHHHHHHHH
Q 002241 314 LLLCGPPGLGKTTLAHVAAKHCGYHVVEVNASDDRSSSTIENKILDV 360 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAkelG~~viEiNaSd~rs~~~~~~~I~~~ 360 (948)
+|++|++|+|||++|..+|.. |..++++..+... ......+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~-d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQIL-DDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC-------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCC-CHHHHHHHHHH
Confidence 789999999999999999988 8888887764322 22344444443
No 318
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.66 E-value=0.047 Score=63.23 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
+..++|+|.||+||||+++.+|+.+++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4689999999999999999999987643
No 319
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.63 E-value=0.056 Score=63.28 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
.+++|.|++|+||||++++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999985
No 320
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.62 E-value=0.25 Score=51.90 Aligned_cols=18 Identities=22% Similarity=0.205 Sum_probs=15.6
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAH 329 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~ 329 (948)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998654
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.59 E-value=0.045 Score=54.67 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+.+.|.||+|+|||||+..|++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999875
No 322
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.57 E-value=0.067 Score=57.28 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++.|.||.|+|||||+++|+.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999974
No 323
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.57 E-value=0.24 Score=51.40 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAH 329 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~ 329 (948)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 468999999999998644
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.56 E-value=0.074 Score=52.64 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
.+.+|+||.|+||||++.+|+--++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 48899999999999999999987753
No 325
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.55 E-value=0.068 Score=59.81 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDD 347 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~ 347 (948)
.+.+++|.||.|+||||+++.||..+ +..|. +++.|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~-l~g~D~ 195 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL-MAAGDT 195 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EECCCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE-Eecccc
Confidence 35799999999999999999999865 44444 444444
No 326
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.46 E-value=0.059 Score=56.80 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999998754
No 327
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.44 E-value=0.55 Score=48.00 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.7
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHV 330 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~ 330 (948)
+.+++++|+|+|||.++-+
T Consensus 58 ~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5689999999999986543
No 328
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.41 E-value=0.73 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++|.|++|+|||||+..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 456889999999999999998765
No 329
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.40 E-value=0.062 Score=57.46 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+.-+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44789999999999999999999754
No 330
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.40 E-value=0.054 Score=57.61 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 331
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.39 E-value=0.067 Score=59.82 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|||||||.++||.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999999643
No 332
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.38 E-value=0.051 Score=56.03 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.++.|.||.|+|||||+++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999974
No 333
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.36 E-value=0.065 Score=56.78 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
..++.|.||.|+|||||+++|+.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 334
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.36 E-value=0.056 Score=56.50 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999999999999764
No 335
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.32 E-value=0.065 Score=57.13 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++.|.||.|+|||||+++|+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4478999999999999999999864
No 336
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.30 E-value=0.057 Score=56.82 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+|||||+++|+...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 337
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.28 E-value=0.066 Score=57.47 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999999764
No 338
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.25 E-value=0.092 Score=58.48 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
...+.|+|+||+||||++..++..+ |..|.-+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 4688999999999999999999875 776655544
No 339
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.25 E-value=0.054 Score=56.14 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+|||||+++++...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 340
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.23 E-value=0.087 Score=63.28 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...||.||||||||+++..++.++
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999887776653
No 341
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.20 E-value=0.29 Score=49.91 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.9
Q ss_pred ceEEEEcCCCCcHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLA 328 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA 328 (948)
+.+++++|+|+|||.++
T Consensus 52 ~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999873
No 342
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.16 E-value=0.06 Score=58.03 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34789999999999999999998754
No 343
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.13 E-value=0.062 Score=56.88 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+.-+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999998754
No 344
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.11 E-value=0.14 Score=54.28 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.3
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVA 331 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~l 331 (948)
+.+|+++|+|+|||.++-+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~ 111 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIP 111 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHHH
Confidence 46899999999999875543
No 345
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.07 E-value=0.081 Score=59.28 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++.|.||.|||||||.++||.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3468999999999999999999964
No 346
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.06 E-value=0.073 Score=56.92 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 347
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.05 E-value=0.073 Score=56.67 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+...
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 348
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.05 E-value=0.082 Score=59.14 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++.|.||.|||||||.++||.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3468999999999999999999964
No 349
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.02 E-value=0.082 Score=59.57 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|||||||.++||.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34689999999999999999999643
No 350
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.99 E-value=0.063 Score=60.03 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
...++|+||+|+|||||+++++..+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 36899999999999999999998764
No 351
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.99 E-value=0.16 Score=52.18 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCCcceec
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC--GYHVVEVN 343 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel--G~~viEiN 343 (948)
+.+.|-|+.|+||||+++.|++.+ |+.++...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 678999999999999999999987 67766553
No 352
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.97 E-value=0.28 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|.||+|||||+..+...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999998754
No 353
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.93 E-value=0.076 Score=55.16 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcce
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVE 341 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viE 341 (948)
...++.|.||.|+||||++++|+.. +..++.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 3578999999999999999999987 444443
No 354
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.91 E-value=0.11 Score=54.43 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCCcceecC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC--GYHVVEVNA 344 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel--G~~viEiNa 344 (948)
..++++.|.+|+||||++..+|..+ |+.+.-++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4789999999999999999999775 666666653
No 355
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.90 E-value=0.09 Score=61.13 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDD 347 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~ 347 (948)
.+.+++|.||.|+|||||++.||..+ +..|. +++.|.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~-l~g~D~ 331 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM-LAAGDT 331 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE-EECCCT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE-EecCcc
Confidence 45799999999999999999999865 44544 443343
No 356
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.89 E-value=0.067 Score=57.28 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34789999999999999999999754
No 357
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.89 E-value=0.068 Score=56.71 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+|||||+++++..+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 358
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.88 E-value=0.087 Score=54.49 Aligned_cols=32 Identities=34% Similarity=0.403 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
-.+-|+|..|+||||+++.+++ +|+.|+..+.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 4688999999999999999998 9998876543
No 359
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.87 E-value=0.088 Score=59.21 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++.|.||.|||||||.++||.-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3468999999999999999999964
No 360
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.87 E-value=0.098 Score=56.94 Aligned_cols=39 Identities=38% Similarity=0.408 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRS 349 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs 349 (948)
.+++++.|++|+||||++..+|..+ |..|+-+.+.-.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 5788999999999999999998765 77887777654444
No 361
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.84 E-value=0.089 Score=58.71 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
...+.|.||+|+|||||+++||..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467899999999999999999998654
No 362
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.81 E-value=0.075 Score=59.22 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++.|.||.|||||||.++||.-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 3468999999999999999999853
No 363
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.78 E-value=0.08 Score=59.16 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
..++.|.||.|||||||.++||.-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999853
No 364
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.76 E-value=0.07 Score=57.55 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+|||||+++||..+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 365
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.70 E-value=0.073 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+|||||+++|+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999753
No 366
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.67 E-value=0.31 Score=59.98 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
+.++++||+|+||||++-+++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999977766554
No 367
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.57 E-value=0.26 Score=51.14 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lA 332 (948)
+.+|+++|+|+|||.++-+.+
T Consensus 68 ~~~li~apTGsGKT~~~~l~~ 88 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAISI 88 (237)
T ss_dssp CCEEECCCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 469999999999997754333
No 368
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.56 E-value=0.076 Score=62.83 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
...++.|.|++|+|||||+++||..++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 346899999999999999999999875
No 369
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.48 E-value=0.089 Score=59.16 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
..++.|.||.|||||||.++||.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 468999999999999999999963
No 370
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.47 E-value=0.073 Score=59.44 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++.|.||.|||||||.++||.-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999999964
No 371
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.30 E-value=0.1 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
-.++|.||+|+|||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999975
No 372
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.30 E-value=0.38 Score=55.10 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS 345 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaS 345 (948)
+.+||+||+|+|||.++-.++.+++..++.+-+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988888888777766554
No 373
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.21 E-value=0.099 Score=55.91 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||.|+|||||++++|...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999754
No 374
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.18 E-value=0.11 Score=58.82 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAk 333 (948)
...++.|.||.|||||||.++||.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 457899999999999999999985
No 375
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.08 E-value=0.1 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++.|.||.|+|||||+++|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34789999999999999999999754
No 376
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.07 E-value=0.11 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
-.++|.||+|+|||||++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 467899999999999999999753
No 377
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.06 E-value=0.17 Score=58.04 Aligned_cols=40 Identities=33% Similarity=0.338 Sum_probs=32.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRSS 350 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs~ 350 (948)
+++++++|++|+||||++-.||..+ |+.|+-+++--.|..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~ 143 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA 143 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 4789999999999999998888654 889988888655543
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.01 E-value=0.18 Score=54.81 Aligned_cols=35 Identities=34% Similarity=0.348 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
.+++.|+|++|+||||++..+|..+ |..|.-+++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4788889999999999999999754 6677666653
No 379
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.94 E-value=0.12 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.+.|.||+|+|||||+++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 380
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.62 E-value=0.18 Score=51.83 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
..++++|+|-||+||+|+|.++.+.+|+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~ 38 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD 38 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTT
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCC
Confidence 45899999999999999999999888764
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.58 E-value=0.15 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
+.++|.|++|+|||||+..++..++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6889999999999999999998864
No 382
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.51 E-value=0.14 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-+++.|++|+|||||+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 383
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.23 E-value=0.11 Score=56.72 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
....+.|.||.|+|||||+++|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45789999999999999999999765
No 384
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.22 E-value=0.15 Score=63.05 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.+.||.||||||||+++..++.++
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 588999999999999887776653
No 385
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.20 E-value=0.12 Score=51.06 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAk 333 (948)
-++|.|++|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
No 386
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.15 E-value=0.19 Score=55.87 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiN 343 (948)
...+.|.||+|+|||||+++|+......+..+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 468999999999999999999999865544443
No 387
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.11 E-value=0.16 Score=48.50 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..++..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 388
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.09 E-value=0.18 Score=55.83 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||||+|||||+++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999764
No 389
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.07 E-value=0.2 Score=49.59 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++|.|++|+|||||+..++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 390
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.05 E-value=0.14 Score=60.52 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CCcceec
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG---YHVVEVN 343 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG---~~viEiN 343 (948)
...++|+|++|+||||+|+.|++.++ +.+..++
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 36789999999999999999999864 4454444
No 391
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.02 E-value=0.17 Score=56.71 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...++-|.||.|+|||||+++|+.-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45789999999999999999999654
No 392
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.01 E-value=0.16 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk 333 (948)
..++|.|++|+|||||++.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4588999999999999999985
No 393
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.97 E-value=0.13 Score=60.51 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHH
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVA 331 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~l 331 (948)
-+...+++|.||+|+|||||++++
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 456689999999999999999994
No 394
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.93 E-value=0.19 Score=57.67 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCCcceecC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNA 344 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNa 344 (948)
....+.|.||+|+|||||+++||+........+-.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 44689999999999999999999998655444433
No 395
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.91 E-value=0.16 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-+++.|++|+|||||+..++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999865
No 396
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=89.90 E-value=0.5 Score=57.36 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=17.7
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVA 331 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~l 331 (948)
.+.+|++||+|+|||+.+-..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHH
Confidence 368999999999999988533
No 397
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.86 E-value=0.17 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998864
No 398
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.84 E-value=0.18 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.+.+|+||.|+||||+..+|+--+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998655
No 399
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.75 E-value=0.18 Score=62.27 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh----CCCcceecCCCCCChHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNASDDRSSSTIENKI 357 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNaSd~rs~~~~~~~I 357 (948)
..+|+.||||||||+++..++.++ +..|+-+..+ ....+.+.+++
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t-n~A~d~l~~rL 424 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS-NVAVDHLAAKL 424 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-HHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc-HHHHHHHHHHH
Confidence 578999999999999876665443 4455444333 23334444444
No 400
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.75 E-value=0.69 Score=53.59 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+.+|+++|+|+|||..+-..+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 569999999999998877666544
No 401
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.72 E-value=0.61 Score=53.93 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCCcceecC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC--------GYHVVEVNA 344 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel--------G~~viEiNa 344 (948)
+.+|+++|+|+|||..+-..+.+. +..++.+-+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 569999999999998877666554 555555544
No 402
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.65 E-value=0.25 Score=56.40 Aligned_cols=39 Identities=33% Similarity=0.363 Sum_probs=30.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCCCCCCh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNASDDRSS 350 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaSd~rs~ 350 (948)
+++++|.||+|+||||++..+|..+ |..|+-+.+ |....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~-D~~r~ 139 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA-DTQRP 139 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC-CSSCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec-cccCc
Confidence 4788899999999999999999865 677777666 44443
No 403
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.63 E-value=0.17 Score=48.78 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5889999999999999998753
No 404
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.58 E-value=0.48 Score=57.62 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=16.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAH 329 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~ 329 (948)
+.+|++||+|+|||+++-
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 689999999999999874
No 405
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.58 E-value=0.19 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 406
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.51 E-value=0.26 Score=54.77 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=28.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecC
Q 002241 308 PPEQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNA 344 (948)
Q Consensus 308 ~p~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNa 344 (948)
.+.+++++.+|-.|+||||+|..+|..+ |+.|+-+++
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456889999999999999999888754 555555554
No 407
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.46 E-value=0.37 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.-++|.||+|+|||+|+..||++.
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHH
Confidence 357888899999999999999863
No 408
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.42 E-value=0.2 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.-+++.|++|+|||||+..++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999864
No 409
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.32 E-value=0.2 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||+..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999875
No 410
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.27 E-value=0.19 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
..++|.|++|+|||||++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999863
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.26 E-value=0.18 Score=58.23 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...+.|.||.|+|||||+++||.-+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3578999999999999999999753
No 412
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.23 E-value=0.2 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 413
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=89.21 E-value=0.56 Score=53.80 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.8
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAH 329 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~ 329 (948)
+.+|++||+|+|||..+-
T Consensus 132 ~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CEEEEECCSSSSHHHHHH
T ss_pred CcEEEEcCCCCchhHHHH
Confidence 789999999999998743
No 414
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.18 E-value=0.2 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998864
No 415
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.15 E-value=0.21 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999863
No 416
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.12 E-value=0.25 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
...++|.|++|+|||||+..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357889999999999999999753
No 417
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.09 E-value=0.2 Score=47.94 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999999853
No 418
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.04 E-value=0.24 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++|.|.+|+|||||+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 567788999999999999999875
No 419
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.04 E-value=0.2 Score=48.03 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAk 333 (948)
-++|.|++|+|||||++.++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999863
No 420
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.03 E-value=0.22 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999999874
No 421
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.02 E-value=0.22 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--+++.|++|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999865
No 422
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.01 E-value=0.48 Score=47.38 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.1
Q ss_pred eEEE-EcCCCCcHHHHHHHHHHH---hCCCcceecCCC
Q 002241 313 VLLL-CGPPGLGKTTLAHVAAKH---CGYHVVEVNASD 346 (948)
Q Consensus 313 ~LLL-~GPPGtGKTTLA~~lAke---lG~~viEiNaSd 346 (948)
++.+ .+-.|+||||++..+|.. .|+.|+-+++..
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4444 466889999999888875 488999888743
No 423
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.98 E-value=0.22 Score=55.71 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.++.|.||+|+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 6899999999999999999996543
No 424
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.94 E-value=0.21 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAk 333 (948)
-++|.|++|+|||||+..++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999986
No 425
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=88.86 E-value=0.23 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999863
No 426
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.86 E-value=0.11 Score=52.20 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAk 333 (948)
...+.|.|++|+|||||++.++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999998864
No 427
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.79 E-value=0.22 Score=54.12 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
..++.|.||+|+|||||+++|+ ....
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 4689999999999999999999 6543
No 428
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.77 E-value=0.24 Score=47.21 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 002241 314 LLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAke 334 (948)
++|.|++|+|||||+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 429
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.74 E-value=0.5 Score=57.30 Aligned_cols=19 Identities=53% Similarity=0.639 Sum_probs=16.9
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHV 330 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~ 330 (948)
+.+|++||+|+|||+.+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp SCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHH
Confidence 6899999999999998843
No 430
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=88.64 E-value=0.38 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk 333 (948)
+.+|+++|+|+|||.++-..+-
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 6799999999999987654443
No 431
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=88.61 E-value=0.26 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lA 332 (948)
+.++++||+|+||||++..++
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 689999999999999776554
No 432
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.59 E-value=0.27 Score=54.30 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCccee
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEV 342 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEi 342 (948)
...+.|.|+||+||||++..++..+ |..+.-+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4688899999999999999998764 5554433
No 433
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.50 E-value=0.25 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999763
No 434
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.49 E-value=0.21 Score=47.79 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAk 333 (948)
-++|.|++|+|||||++.++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999998863
No 435
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.47 E-value=0.33 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
..-++|.|++|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 436
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.46 E-value=0.22 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35889999999999999998853
No 437
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.43 E-value=1.4 Score=49.35 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCCcceecC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC----GYHVVEVNA 344 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel----G~~viEiNa 344 (948)
.+||.+|+|+|||..+-+++.+. +..++.+-+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 68999999999999888776654 555555444
No 438
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.43 E-value=0.25 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 439
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.42 E-value=0.24 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999875
No 440
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.34 E-value=0.24 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||+..++..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4778899999999999999854
No 441
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.31 E-value=1 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk 333 (948)
+.+|+++|+|+|||.++-+.+-
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHHH
Confidence 4699999999999976654443
No 442
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.30 E-value=0.3 Score=54.24 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
...+.|.|+||+|||||...++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999864
No 443
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.30 E-value=0.25 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 444
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.28 E-value=0.33 Score=47.86 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAke 334 (948)
..-++|.|++|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998753
No 445
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.26 E-value=0.24 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.-++|.|++|+|||||+..+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999875
No 446
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.24 E-value=0.22 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
+.+||+|++|+||||+|..+.+ .|+.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~-~G~~ 173 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN-KNHL 173 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT-TTCE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCE
Confidence 7899999999999999988765 5654
No 447
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.23 E-value=0.24 Score=48.69 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||++.++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999999874
No 448
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.20 E-value=0.26 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35788999999999999999865
No 449
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.19 E-value=0.24 Score=54.26 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGYH 338 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~~ 338 (948)
+.+||.|++|+||||+|..+.+. |+.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~ 170 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHR 170 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCc
Confidence 78999999999999999999874 544
No 450
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.17 E-value=0.26 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999874
No 451
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.10 E-value=0.22 Score=54.14 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++.|.||+|+|||||+++|+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3689999999999999999998654
No 452
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.09 E-value=0.27 Score=47.77 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 453
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.09 E-value=0.27 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.-++|.|++|+|||||+..++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45889999999999999999864
No 454
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.06 E-value=0.24 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAK 333 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAk 333 (948)
--++|.|++|+|||||++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999875
No 455
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.03 E-value=0.26 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 456
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=88.02 E-value=0.85 Score=50.64 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=16.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lA 332 (948)
+.+++.+|+|+|||..+-+.+
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHHH
T ss_pred CCEEEECCCCCcccHHHHHHH
Confidence 458999999999998754433
No 457
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.83 E-value=0.28 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.-++|.|++|+|||||+..++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999864
No 458
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.73 E-value=0.39 Score=52.59 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
+++++++|-.|+||||+|..+|..+ |+.|+-+++-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5789999999999999999888753 6666666653
No 459
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.72 E-value=0.21 Score=54.66 Aligned_cols=24 Identities=42% Similarity=0.392 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
++++|+||.|+|||||++.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 689999999999999999999764
No 460
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=87.70 E-value=0.25 Score=58.57 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
+.+||++|+|+|||.++-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 567999999999999987776653
No 461
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=87.68 E-value=0.85 Score=46.94 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 002241 314 LLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 314 LLL~GPPGtGKTTLA~~lAke 334 (948)
++|.|.+|+|||+|++.+...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 677799999999999988753
No 462
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=87.68 E-value=0.29 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 463
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.66 E-value=0.25 Score=48.34 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAke 334 (948)
-++|.|++|+|||||+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999998853
No 464
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.58 E-value=0.3 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999864
No 465
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.56 E-value=1.4 Score=51.61 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.0
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAH 329 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~ 329 (948)
.+.+|+++|+|+|||.++-
T Consensus 111 ~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCccHHHH
Confidence 3789999999999998543
No 466
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.53 E-value=0.31 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999864
No 467
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.32 E-value=0.31 Score=48.02 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 468
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.26 E-value=0.32 Score=47.98 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..++..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 469
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.26 E-value=0.3 Score=48.58 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.-++|.|++|+|||||++.++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999873
No 470
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=87.23 E-value=0.32 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||++.++..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999887764
No 471
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=87.16 E-value=0.33 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35888999999999999998864
No 472
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.14 E-value=0.41 Score=48.67 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 313 VLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 313 ~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
.+.|-|+-|+||||.++.|++.+ |+.|+...-.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 36789999999999999999875 7887765443
No 473
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=87.13 E-value=0.56 Score=54.46 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHH-HHHHHHHhCCCcc
Q 002241 312 KVLLLCGPPGLGKTTL-AHVAAKHCGYHVV 340 (948)
Q Consensus 312 k~LLL~GPPGtGKTTL-A~~lAkelG~~vi 340 (948)
.-++|.|++|+|||+| ...|+++.+.+++
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~~dv~ 205 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKGQGVY 205 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTTTTEE
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhcCCcE
Confidence 4577888899999999 5799999887754
No 474
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=87.12 E-value=0.33 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999874
No 475
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.12 E-value=0.27 Score=56.16 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.1
Q ss_pred Cce--EEEEcCCCCcHHHHHHHHHHH
Q 002241 311 QKV--LLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 311 ~k~--LLL~GPPGtGKTTLA~~lAke 334 (948)
..+ +.|.||+|+|||||+++|+..
T Consensus 40 Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 40 GFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 356 889999999999999999865
No 476
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.11 E-value=0.33 Score=47.99 Aligned_cols=23 Identities=39% Similarity=0.338 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..++..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 477
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.09 E-value=0.33 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
--++|.|++|+|||||+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 358899999999999999998753
No 478
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=87.07 E-value=1.2 Score=53.71 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCG 336 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG 336 (948)
.+.+.|.|++|+|||||+..++...+
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcC
Confidence 47899999999999999999997655
No 479
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=87.01 E-value=0.35 Score=58.55 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=17.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAA 332 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lA 332 (948)
++.+|++||+|+|||+.|-..+
T Consensus 155 rk~vlv~apTGSGKT~~al~~l 176 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAIQKY 176 (677)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4799999999999999554333
No 480
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.95 E-value=0.34 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999864
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.93 E-value=0.47 Score=53.18 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
..++++.||+|+||||+++.++.++
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999888753
No 482
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.89 E-value=0.35 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHCGY 337 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkelG~ 337 (948)
.+.+|+||.|+||||+..+|.--++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 68899999999999999999876654
No 483
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=86.86 E-value=0.33 Score=47.27 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.-++|.|++|+|||||++.+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999853
No 484
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.79 E-value=0.35 Score=47.90 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45889999999999999988864
No 485
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=86.78 E-value=0.35 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999864
No 486
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=86.72 E-value=0.29 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||++.++..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999874
No 487
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.71 E-value=0.35 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..++..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999874
No 488
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=86.70 E-value=0.36 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||++.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999875
No 489
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=86.70 E-value=0.35 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
.-++|.|++|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 490
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=86.66 E-value=0.34 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998864
No 491
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=86.63 E-value=0.46 Score=57.27 Aligned_cols=35 Identities=37% Similarity=0.462 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCCcceecCC
Q 002241 311 QKVLLLCGPPGLGKTTLAHVAAKHCGYHVVEVNAS 345 (948)
Q Consensus 311 ~k~LLL~GPPGtGKTTLA~~lAkelG~~viEiNaS 345 (948)
.+.+|+.||+|+|||+.+-..+-+.|..++.+...
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PT 266 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPS 266 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESC
T ss_pred CCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcch
Confidence 47899999999999987765555667777766664
No 492
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=86.52 E-value=0.37 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56889999999999999999864
No 493
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=86.50 E-value=0.35 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..++..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999864
No 494
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.50 E-value=0.53 Score=52.03 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
..++++++|-.|+||||+|..+|..+ |..|+-+++-
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 35899999999999999999999764 6666666654
No 495
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.39 E-value=0.37 Score=48.23 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..++..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999999854
No 496
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=86.39 E-value=0.64 Score=53.92 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCcHHHH-HHHHHHHhCCCcc
Q 002241 312 KVLLLCGPPGLGKTTL-AHVAAKHCGYHVV 340 (948)
Q Consensus 312 k~LLL~GPPGtGKTTL-A~~lAkelG~~vi 340 (948)
.-++|.|++|+|||+| ...|+++.+.+++
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 192 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKGQDVI 192 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGSCSEE
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhcCCcE
Confidence 4477788899999999 5799999887754
No 497
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=86.35 E-value=0.38 Score=47.42 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 498
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.34 E-value=0.37 Score=55.89 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKHC 335 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAkel 335 (948)
.++.|.||.|+|||||+++|+..+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999999865
No 499
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=86.31 E-value=0.54 Score=51.64 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCCcceecCC
Q 002241 310 EQKVLLLCGPPGLGKTTLAHVAAKHC---GYHVVEVNAS 345 (948)
Q Consensus 310 ~~k~LLL~GPPGtGKTTLA~~lAkel---G~~viEiNaS 345 (948)
.+++++++|-.|+||||++-.+|..+ |+.|+-+++.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D 56 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD 56 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35789999999999999999888754 7777776663
No 500
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=86.28 E-value=0.36 Score=48.30 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 002241 312 KVLLLCGPPGLGKTTLAHVAAKH 334 (948)
Q Consensus 312 k~LLL~GPPGtGKTTLA~~lAke 334 (948)
--++|.|++|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999864
Done!