BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002242
         (948 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Y88|A Chain A, Crystal Structure Of Protein Of Unknown Function Af1548
          Length = 199

 Score = 31.6 bits (70), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 22/126 (17%)

Query: 623 MLHNLSEERNNYLETQVPIRKRIRLSEVEVDLRQNRDIEKLQSSHKFHSVTRTSEMSKNS 682
           M+  L EE     ET+  +  +    E E+D+   RD E+     KFH++   + +    
Sbjct: 23  MVARLLEEHG--FETKTNVIVQGNCVEQEIDVVAERDGERYMIECKFHNIPVYTGL---- 76

Query: 683 NACRDSQLQYVKRCSTTRRKYVKRLIFQGIKF-------------LLTGFSSQKEKEIEV 729
              +++   Y +     +  + +  IF   KF              LTG+S  +++ IEV
Sbjct: 77  ---KEAMYTYARFLDVEKHGFTQPWIFTNTKFSEEAKKYAGCVGIKLTGWSYPEKEGIEV 133

Query: 730 LIQKYG 735
           L++  G
Sbjct: 134 LLESKG 139


>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
           Resolution
          Length = 311

 Score = 30.0 bits (66), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 640 PIRKRIRLSEVEVDLRQNRDIEKLQSSHKFHSVTRTSEMSK 680
           P+R    L EVE+ L+  ++IEK+  + K  + TR S+  K
Sbjct: 29  PVRTYATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEK 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,614,595
Number of Sequences: 62578
Number of extensions: 1140358
Number of successful extensions: 1888
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1885
Number of HSP's gapped (non-prelim): 11
length of query: 948
length of database: 14,973,337
effective HSP length: 108
effective length of query: 840
effective length of database: 8,214,913
effective search space: 6900526920
effective search space used: 6900526920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)