BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002242
(948 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4N7|REV1_PONAB DNA repair protein REV1 OS=Pongo abelii GN=REV1 PE=2 SV=1
Length = 1250
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 24/122 (19%)
Query: 708 IFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICP- 766
IF G+ + G++ +E+ L+ +GG + SRS + + P
Sbjct: 48 IFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHV----------YYSRSKTTHIIATNLPN 97
Query: 767 ---KKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPI 823
K+LK K +++ +W+ +S+ AG +S Y + + Q+ +++ PI
Sbjct: 98 AKIKELKGEK----------VIRPEWIVESIKAGRLLSYIPYQLYTKQSSVQKGLSFNPI 147
Query: 824 CR 825
CR
Sbjct: 148 CR 149
>sp|Q9UBZ9|REV1_HUMAN DNA repair protein REV1 OS=Homo sapiens GN=REV1 PE=1 SV=1
Length = 1251
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 24/122 (19%)
Query: 708 IFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICP- 766
IF G+ + G++ +E+ L+ +GG + SRS + + P
Sbjct: 48 IFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHV----------YYSRSKTTHIIATNLPN 97
Query: 767 ---KKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPI 823
K+LK K +++ +W+ +S+ AG +S Y + + Q+ +++ P+
Sbjct: 98 AKIKELKGEK----------VIRPEWIVESIKAGRLLSYIPYQLYTKQSSVQKGLSFNPV 147
Query: 824 CR 825
CR
Sbjct: 148 CR 149
>sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana
GN=At4g02110 PE=1 SV=3
Length = 1329
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 714 FLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSH--SQQLPVVICPKKLKT 771
F+++G SQ+ E + +I++ +GK C SH S Q I P+ +T
Sbjct: 1100 FIVSGPRSQR-NEYQQIIRRL-------------KGKCCRDSHQWSYQATHFIAPEIRRT 1145
Query: 772 TKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKY 805
KF A ++ILK ++ DS AG + Y
Sbjct: 1146 EKFFAAAASGSWILKTDYVADSKEAGKLLQEEPY 1179
>sp|Q9HNI2|GLNA_HALSA Glutamine synthetase OS=Halobacterium salinarum (strain ATCC 700922
/ JCM 11081 / NRC-1) GN=glnA PE=3 SV=1
Length = 454
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 227 KHVECLAHKKKLPADPALNLNGSYMEGKIDPMLHQSTQETSHVLAAAQPEASTNSIYAWN 286
K+V AH+ + + +GS +EG + QE+ L P+ T ++ W
Sbjct: 42 KNVSIPAHQAEKAFTEGIYFDGSSIEGFV------RIQESDMRL---DPDPETFAVLPWR 92
Query: 287 SNNAVGKEEICCSVVDRFRSRWFGG 311
SN G + C VVDR + + GG
Sbjct: 93 SNGDGGSARLICDVVDREGNAFAGG 117
>sp|Q80ZF0|CORA1_RAT Collagen alpha-1(XXVII) chain OS=Rattus norvegicus GN=Col27a1 PE=2
SV=1
Length = 1855
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 857 GGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIA 903
GG++FKTLH+L +++ K +G EN RV R L C E+K+A
Sbjct: 1654 GGEIFKTLHYLSNLIQSIKTPLG--TKENPARVCRDLMDC--EQKMA 1696
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 26/110 (23%)
Query: 705 KRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVI 764
++LIFQG+ + GF+ +E++ + KYGG + R S +H +I
Sbjct: 84 EKLIFQGVSIFVDGFTIPSHQELKGYMMKYGGRF-------ENYFSRRSVTH------II 130
Query: 765 CP-------KKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMI 807
C K L+T F G V +K W+ DS++A + Y +
Sbjct: 131 CSNLPDSKVKNLRT--FSRGLPV----VKPTWIVDSISANRLLGWVPYQL 174
>sp|Q920Q2|REV1_MOUSE DNA repair protein REV1 OS=Mus musculus GN=Rev1 PE=1 SV=1
Length = 1249
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 24/122 (19%)
Query: 708 IFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICP- 766
IF G+ + G++ +E+ L+ +GG + SRS + + P
Sbjct: 48 IFSGVAIYVNGYTDPSAEELRNLMMLHGGQYHV----------YYSRSKTTHIIATNLPN 97
Query: 767 ---KKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPI 823
K+LK K +++ +W+ +S+ AG +S A Y + + + +++ P+
Sbjct: 98 AKIKELKGEK----------VIRPEWIVESIKAGRLLSSAPYQLYTKPSAAQKSLNFNPV 147
Query: 824 CR 825
C+
Sbjct: 148 CK 149
>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha OS=Rattus norvegicus
GN=Scn3a PE=1 SV=1
Length = 1951
Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 5/136 (3%)
Query: 544 TYKTTVTGNPYAVATNCTENNDKLVSHGAGLLEPLKESRLPPFPNRGTCRSHASKLIGDV 603
++ ++ GNP + L+S L P + S+ F RG + S+ D
Sbjct: 536 SFLLSLDGNPLTGDKKLCSPHQSLLSIRGSLFSPRRNSKTSIFSFRGRAKDVGSE--NDF 593
Query: 604 NNSFGKTNPDEAGVQETVVMLHNLSEERN-NYLETQVPIRKRIRLSEVEVDLRQNRDIEK 662
+ T D ++++ + H E RN N T+ +RKR RLS ++ + D
Sbjct: 594 ADDEHSTFEDSESRRDSLFVPHRPGERRNSNGTTTETEVRKR-RLSSYQISMEMLEDSSG 652
Query: 663 LQSSHKFHSV-TRTSE 677
Q S S+ T T E
Sbjct: 653 RQRSMSIASILTNTME 668
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 350,806,268
Number of Sequences: 539616
Number of extensions: 14922061
Number of successful extensions: 27162
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 27136
Number of HSP's gapped (non-prelim): 51
length of query: 948
length of database: 191,569,459
effective HSP length: 127
effective length of query: 821
effective length of database: 123,038,227
effective search space: 101014384367
effective search space used: 101014384367
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)