Query 002242
Match_columns 948
No_of_seqs 71 out of 73
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 19:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3548 DNA damage checkpoint 99.8 5.7E-20 1.2E-24 213.7 12.5 290 630-927 841-1165(1176)
2 KOG4362 Transcriptional regula 99.4 7.3E-13 1.6E-17 153.5 12.5 193 710-923 477-684 (684)
3 PF00533 BRCT: BRCA1 C Terminu 99.3 9.8E-12 2.1E-16 103.7 8.9 77 704-794 1-78 (78)
4 KOG2043 Signaling protein SWIF 99.0 5.8E-10 1.3E-14 133.9 10.8 197 712-929 660-865 (896)
5 smart00292 BRCT breast cancer 98.9 3.3E-09 7.2E-14 86.2 8.0 78 707-797 1-80 (80)
6 cd00027 BRCT Breast Cancer Sup 98.8 1.2E-08 2.5E-13 81.2 7.4 71 711-795 1-72 (72)
7 PF00533 BRCT: BRCA1 C Terminu 98.6 2.6E-07 5.7E-12 77.2 8.7 76 828-914 2-78 (78)
8 smart00292 BRCT breast cancer 98.5 5.2E-07 1.1E-11 73.3 8.3 78 830-917 1-80 (80)
9 PF12738 PTCB-BRCT: twin BRCT 98.3 4.7E-07 1E-11 75.5 4.4 63 712-789 1-63 (63)
10 cd00027 BRCT Breast Cancer Sup 98.3 2.4E-06 5.3E-11 67.9 7.9 69 834-914 1-71 (72)
11 KOG1929 Nucleotide excision re 98.3 2.7E-06 5.9E-11 102.0 10.9 147 701-861 96-270 (811)
12 KOG1929 Nucleotide excision re 98.1 1.4E-05 3.1E-10 96.0 12.5 177 706-923 7-184 (811)
13 PLN03122 Poly [ADP-ribose] pol 97.7 6.1E-05 1.3E-09 91.0 8.0 90 705-808 186-278 (815)
14 KOG0966 ATP-dependent DNA liga 97.6 0.00052 1.1E-08 82.2 12.6 88 705-805 630-719 (881)
15 KOG3524 Predicted guanine nucl 97.5 5.5E-05 1.2E-09 89.1 3.8 141 706-888 116-257 (850)
16 PLN03123 poly [ADP-ribose] pol 97.4 0.00026 5.7E-09 87.2 7.6 92 704-809 389-482 (981)
17 KOG3226 DNA repair protein [Re 97.1 0.00044 9.5E-09 77.4 4.7 93 706-813 315-407 (508)
18 KOG2481 Protein required for n 96.9 0.00081 1.7E-08 77.6 4.4 92 706-808 325-416 (570)
19 PLN03122 Poly [ADP-ribose] pol 96.5 0.0065 1.4E-07 74.1 8.2 87 827-923 185-273 (815)
20 PF12738 PTCB-BRCT: twin BRCT 96.5 0.0093 2E-07 49.9 6.6 62 835-909 1-63 (63)
21 PLN03123 poly [ADP-ribose] pol 96.0 0.013 2.9E-07 72.8 7.7 89 827-925 389-478 (981)
22 COG5163 NOP7 Protein required 95.5 0.014 3E-07 66.4 4.3 92 706-808 348-440 (591)
23 KOG3548 DNA damage checkpoint 94.5 0.048 1E-06 67.0 5.4 93 829-923 923-1031(1176)
24 PRK06063 DNA polymerase III su 94.4 0.11 2.4E-06 57.1 7.6 76 705-794 229-305 (313)
25 PRK14350 ligA NAD-dependent DN 94.3 0.1 2.2E-06 62.9 7.6 74 706-794 591-665 (669)
26 KOG4362 Transcriptional regula 94.2 0.026 5.6E-07 67.7 2.4 143 770-921 35-194 (684)
27 PRK14350 ligA NAD-dependent DN 94.1 0.12 2.7E-06 62.3 7.7 71 829-912 591-663 (669)
28 PRK07956 ligA NAD-dependent DN 93.5 0.22 4.7E-06 60.1 8.2 74 708-796 590-664 (665)
29 PRK06063 DNA polymerase III su 93.3 0.19 4.1E-06 55.3 6.9 74 830-914 231-305 (313)
30 KOG2481 Protein required for n 93.3 0.063 1.4E-06 62.7 3.4 88 826-923 322-411 (570)
31 PRK14351 ligA NAD-dependent DN 93.2 0.26 5.7E-06 59.7 8.4 77 706-796 607-684 (689)
32 COG5163 NOP7 Protein required 92.2 0.13 2.8E-06 58.9 3.9 88 827-924 346-436 (591)
33 TIGR00575 dnlj DNA ligase, NAD 91.7 0.35 7.6E-06 58.3 7.0 67 707-788 583-650 (652)
34 COG0272 Lig NAD-dependent DNA 91.6 0.4 8.6E-06 58.0 7.2 71 707-793 593-665 (667)
35 PRK07956 ligA NAD-dependent DN 91.6 0.46 1E-05 57.4 7.7 72 831-915 590-663 (665)
36 PRK06195 DNA polymerase III su 90.8 0.73 1.6E-05 50.4 7.6 69 706-788 218-300 (309)
37 PRK14351 ligA NAD-dependent DN 90.5 0.77 1.7E-05 55.8 8.2 74 830-915 608-683 (689)
38 PRK06195 DNA polymerase III su 89.6 2.5 5.5E-05 46.3 10.6 75 829-914 218-306 (309)
39 COG0272 Lig NAD-dependent DNA 89.4 0.94 2E-05 54.9 7.6 72 830-914 593-666 (667)
40 KOG0966 ATP-dependent DNA liga 87.8 1.4 3.1E-05 54.2 7.8 207 705-923 481-717 (881)
41 TIGR00575 dnlj DNA ligase, NAD 87.6 0.96 2.1E-05 54.7 6.2 67 830-909 583-651 (652)
42 KOG3226 DNA repair protein [Re 84.8 1.6 3.4E-05 50.2 5.6 81 828-921 314-395 (508)
43 KOG2093 Translesion DNA polyme 72.5 5.8 0.00012 49.7 5.6 191 704-931 43-251 (1016)
44 TIGR01278 DPOR_BchB light-inde 65.6 20 0.00043 42.2 7.9 135 718-862 170-324 (511)
45 KOG2043 Signaling protein SWIF 47.0 31 0.00067 43.9 5.7 74 835-923 660-734 (896)
46 COG5275 BRCT domain type II [G 39.6 62 0.0013 35.6 5.8 37 705-741 153-190 (276)
47 COG5275 BRCT domain type II [G 38.0 93 0.002 34.3 6.8 76 828-915 153-230 (276)
48 KOG3524 Predicted guanine nucl 30.6 35 0.00076 42.4 2.6 100 692-810 197-296 (850)
49 PRK02910 light-independent pro 28.3 1.2E+02 0.0025 36.2 6.3 136 718-862 170-322 (519)
50 cd01977 Nitrogenase_VFe_alpha 25.4 89 0.0019 35.7 4.5 126 725-862 178-317 (415)
51 COG3130 Rmf Ribosome modulatio 25.0 16 0.00035 31.8 -1.0 21 294-314 26-46 (55)
52 PRK05601 DNA polymerase III su 24.3 2.7E+02 0.0059 32.7 8.0 76 829-915 292-368 (377)
53 PF09849 DUF2076: Uncharacteri 24.1 60 0.0013 35.7 2.7 58 90-160 11-70 (247)
54 TIGR00789 flhB_rel flhB C-term 23.5 1.4E+02 0.0031 27.8 4.6 38 878-915 17-54 (82)
55 cd01974 Nitrogenase_MoFe_beta 20.1 3.1E+02 0.0066 31.8 7.4 137 715-862 165-331 (435)
No 1
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=99.81 E-value=5.7e-20 Score=213.70 Aligned_cols=290 Identities=16% Similarity=0.187 Sum_probs=186.1
Q ss_pred hhhccccccccccccceechhhhhhhhccchhhhhcccc--------cccc--eeccccccCCccccchhhhHhhhcccc
Q 002242 630 ERNNYLETQVPIRKRIRLSEVEVDLRQNRDIEKLQSSHK--------FHSV--TRTSEMSKNSNACRDSQLQYVKRCSTT 699 (948)
Q Consensus 630 e~~n~~~~~~~~RKrv~fse~~~~~~q~k~~~k~qt~~~--------~~~~--~~~~~~~~~s~~~~~s~~~~~~~~~~~ 699 (948)
+|--++...+++|-+.--+.+-.=.--+++ ||.+|.+- ++++ ..+++++|+-.+|-.+..--+...+-+
T Consensus 841 k~day~~s~~~~a~~~s~snvpti~eatra-rK~it~~~e~sp~~~rks~tvk~~v~~~gr~asp~eegd~sll~s~lEe 919 (1176)
T KOG3548|consen 841 KWDAYVKSKDQSATAISTSNVPTISEATRA-RKPITVSNEASPKDGRKSKTVKLLVSSRGRSASPAEEGDESLLPSMLEE 919 (1176)
T ss_pred hhhhhhccccccccceeecccccccccccc-ccccccccccccccccccccccccccccccccChhhccCcccccccchh
Confidence 333344444444444433333221122233 67766543 3333 234555666667766544433333222
Q ss_pred cccccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCC--CCCCc----CCccccCC------CCCCcEEECCC
Q 002242 700 RRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIP--PPNSQ----GKRCSRSH------SQQLPVVICPK 767 (948)
Q Consensus 700 ~~~~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip--~pldk----~kR~aef~------st~~~VVI~~k 767 (948)
+ -...||-|.+|||||... .+++...-++.+||.|+..+= +.++. +..+-.|+ .+--..||++.
T Consensus 920 ~---~gkniFd~cvF~lTsa~~-sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdt 995 (1176)
T KOG3548|consen 920 A---IGKNIFDGCVFMLTSANR-SDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDT 995 (1176)
T ss_pred h---hCcchhcceeEEEecccc-chhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehh
Confidence 2 236899999999999986 355688888889999998643 12221 22222222 22235789999
Q ss_pred CcchHHHHHHhhcCcceechHHHHHHHhcCCCCCCCcccccCccccccccCC-Cch------hhhc-----cCCCCCCCe
Q 002242 768 KLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGI-TEP------ICRD-----NHKYIFGRV 835 (948)
Q Consensus 768 ~~RT~KfL~GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI-~~~------vh~k-----~~~~LFdG~ 835 (948)
..||.|||.++|.|+||||+.||.+|..+++++|+-.|+|++|++..-.+.+ +.. .-.+ ....|| |.
T Consensus 996 h~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~-~~ 1074 (1176)
T KOG3548|consen 996 HYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLS-AR 1074 (1176)
T ss_pred hhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCccccccccccccCccccCchhhccceeeEeecccc-ce
Confidence 9999999999999999999999999999999999999999999887221111 111 1011 112233 23
Q ss_pred EEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHH
Q 002242 836 GIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSL 914 (948)
Q Consensus 836 rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESI 914 (948)
.|...| ...|.+.|..||++||+-++..-...+...|..-...++|++++.-. ...-.|+.+++.|+|+.|||||||
T Consensus 1075 ~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~--~svmk~ad~l~~pvvs~EWvIQti 1152 (1176)
T KOG3548|consen 1075 EVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFR--DSVMKYADTLGAPVVSSEWVIQTI 1152 (1176)
T ss_pred eEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccH--HHHHHHHHHhCCCccChhHhheee
Confidence 333333 46799999999999999999743333333333444556666665442 234568999999999999999999
Q ss_pred HhCCccCCCCCCC
Q 002242 915 HIGMLLPQTQDKH 927 (948)
Q Consensus 915 msgkLLPf~~d~~ 927 (948)
+.|+-.-+++++.
T Consensus 1153 I~~~~i~~~~hpk 1165 (1176)
T KOG3548|consen 1153 ILGKAIEPNAHPK 1165 (1176)
T ss_pred eccccCCcccCcc
Confidence 9999888876654
No 2
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=99.42 E-value=7.3e-13 Score=153.50 Aligned_cols=193 Identities=16% Similarity=0.242 Sum_probs=132.3
Q ss_pred cceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECC-----CCcchHHHHHHhhcCcce
Q 002242 710 QGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICP-----KKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 710 ~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~-----k~~RT~KfL~GIAsGaWI 784 (948)
..++.+.+|+....+.-+.+..++ ++. .|.....+|||+. ...||+|||+||+.|+||
T Consensus 477 kk~~~~~s~l~p~ek~~v~~~a~~---t~~--------------k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi 539 (684)
T KOG4362|consen 477 KKLVLLVSGLTPSEKQLVEKFAVD---TIS--------------KFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWI 539 (684)
T ss_pred cceeeeeccCCcchHHHHHHHHHH---HHh--------------hccCCCceeeeeecccccchhhhHHHHHHhhcCcee
Confidence 346777899987655446655544 111 1222234455543 335999999999999999
Q ss_pred echHHHHHHHhcCCCCCCCcccccCcc-ccccccCCCchhhhccCCCCCCCeEEEEecC--CchhhhHHHHHHhcCceEE
Q 002242 785 LKAKWLTDSVAAGSTVSPAKYMILSSQ-ADLKRTGITEPICRDNHKYIFGRVGIMLHGK--PSFCTKFAVIVKHGGGQVF 861 (948)
Q Consensus 785 LKpsWLkDSiqAGk~LPEekYeI~S~k-s~~k~srI~~~vh~k~~~~LFdG~rfyL~GK--~sFkDkfsrIIKAGGGQVV 861 (948)
|+++|+.+|++.+++++|+.|+|.-.- +........+.......++||.|..||+.|+ ...++++..++.++||.++
T Consensus 540 ~~~~w~~~s~k~~~~~~eepfEl~~d~~~~~~~~~~~~~~a~s~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l 619 (684)
T KOG4362|consen 540 LSYDWVLASLKLRKWVSEEPFELQIDVPGAREGPKEKRLRAESYKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTIL 619 (684)
T ss_pred eeHHHHHHHHHhcCCCCCCCeeEeecccCcccCcccccccccccCcchhcCCcceeecccccCcHHHHHHHHhhcCccee
Confidence 999999999999999999999987322 1211111122222335689999999999994 4677999999999999999
Q ss_pred eehhhhhccccccccceeEEEecCCcchhhhh-------HHHHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 862 KTLHWLVLSLETQKNIVGVIVAENERRVSRHL-------RHCAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 862 ktLa~l~qSldDqs~s~~yIIvedESs~Sr~L-------k~~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
+.-.. +.++.+.++..++ .........+ -.++..-+.+.+..+|+.++|..+++++|.
T Consensus 620 ~~~~~---~~~~~k~s~~~~~-~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~~~~~~v~ 684 (684)
T KOG4362|consen 620 QVPRV---AYSDKKKSTIVVL-SEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAGYQILVVI 684 (684)
T ss_pred eccCc---ccccccccceeEe-ecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhceeeeecC
Confidence 64322 2455666664433 3333222212 124555589999999999999999998873
No 3
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.30 E-value=9.8e-12 Score=103.73 Aligned_cols=77 Identities=31% Similarity=0.508 Sum_probs=67.7
Q ss_pred cccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC-cchHHHHHHhhcCc
Q 002242 704 VKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK-LKTTKFLYGCAVNA 782 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~-~RT~KfL~GIAsGa 782 (948)
++..+|.|+.|.++|+...++.+++++|+.+||+|..... ..++|||++.. .++.|++.+.+.|+
T Consensus 1 ~~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~--------------~~~thvI~~~~~~~~~k~~~~~~~~i 66 (78)
T PF00533_consen 1 NKPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFS--------------KKTTHVIVGNPNKRTKKYKAAIANGI 66 (78)
T ss_dssp CSTTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSS--------------TTSSEEEESSSHCCCHHHHHHHHTTS
T ss_pred CCCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecc--------------cCcEEEEeCCCCCccHHHHHHHHCCC
Confidence 3678999999999999998888999999999999975522 24567887776 89999999999999
Q ss_pred ceechHHHHHHH
Q 002242 783 FILKAKWLTDSV 794 (948)
Q Consensus 783 WILKpsWLkDSi 794 (948)
|||+++||.||+
T Consensus 67 ~iV~~~Wi~~ci 78 (78)
T PF00533_consen 67 PIVSPDWIEDCI 78 (78)
T ss_dssp EEEETHHHHHHH
T ss_pred eEecHHHHHHhC
Confidence 999999999996
No 4
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=5.8e-10 Score=133.86 Aligned_cols=197 Identities=14% Similarity=0.196 Sum_probs=137.8
Q ss_pred eEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcceechHHHH
Q 002242 712 IKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLT 791 (948)
Q Consensus 712 LvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILKpsWLk 791 (948)
...|.+++.+ .+.++..++.+||.|.+. .+..+|+|++.-+||.|||.||+.|+||+.++||.
T Consensus 660 ~~~lfs~~~~--~~~~k~~~k~lg~s~~ss---------------~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~ 722 (896)
T KOG2043|consen 660 IEVLFSDKND--GKNYKLAKKFLGGSVASS---------------DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLV 722 (896)
T ss_pred eeeeeeeccC--chhhhhHHhhccceeecc---------------cccceeeeehhhhccHHHHhhhccCCcccchHHHH
Confidence 5677788864 345999999999888755 23456789998999999999999999999999999
Q ss_pred HHHhcCCCCCCCcccccCcccccccc-CCCchhhhccCCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeehhhhhc
Q 002242 792 DSVAAGSTVSPAKYMILSSQADLKRT-GITEPICRDNHKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVL 869 (948)
Q Consensus 792 DSiqAGk~LPEekYeI~S~ks~~k~s-rI~~~vh~k~~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~q 869 (948)
+|+++|.++++..|++.+...-+++. ++.....+....++|.|.+|++.- .......+..||+.+||.|+.....-..
T Consensus 723 s~~k~g~~~dek~yil~D~ekEk~~gf~l~ssl~RAr~~plL~g~~v~vtp~v~p~~~~v~eiie~~ggnvv~~~p~~~~ 802 (896)
T KOG2043|consen 723 SSLKSGEKLDEKPYILHDEEKEKEFGFRLKSSLLRARADPLLEGINVHVTPSVTPSPKTVVEIIEISGGNVVSDSPKGVY 802 (896)
T ss_pred HHhhccccccCccccccCHHHHhccCcchhhHHHHhhcchhhcCceEEeccccccCcchhHHHHhhcCcceecccCccce
Confidence 99999999999999999876554422 233333333445899999999997 3344468999999999999963332110
Q ss_pred ccccccc----ceeEEEecCCcchhhhhHHHHhhcCce---eechHHHHHHHHhCCccCCCCCCCCC
Q 002242 870 SLETQKN----IVGVIVAENERRVSRHLRHCAFEKKIA---MVPASWIIKSLHIGMLLPQTQDKHIP 929 (948)
Q Consensus 870 SldDqs~----s~~yIIvedESs~Sr~Lk~~Arr~gIP---~VpsEWIIESImsgkLLPf~~d~~~~ 929 (948)
. ..... -..++|.+.+.. .++ +.-...+.+ ++..+.+..-.+.++-.|+...+...
T Consensus 803 ~-~k~~l~~~~~~~v~itc~~D~--~~~-~~fl~~~~~~~~i~~~~~~l~~~~v~q~~~~~~~ri~l 865 (896)
T KOG2043|consen 803 T-KKIVLSAHDLDVVGITCSEDR--TFC-DNFLDNGLEQENIFSPEYVLKGGLVQQQEPSPALRIPL 865 (896)
T ss_pred e-cccccccCcccceeecccccc--ccc-ccccccccccccccchHhhhhccceeecccccceeccc
Confidence 0 00011 123666666552 222 223344555 77777777777777777776555433
No 5
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.94 E-value=3.3e-09 Score=86.16 Aligned_cols=78 Identities=28% Similarity=0.485 Sum_probs=61.6
Q ss_pred ccccceEEEEcC-CCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC-cchHHHHHHhhcCcce
Q 002242 707 LIFQGIKFLLTG-FSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK-LKTTKFLYGCAVNAFI 784 (948)
Q Consensus 707 ~IF~GLvFLLTG-fss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~-~RT~KfL~GIAsGaWI 784 (948)
.+|.|+.|+++| +....+..+.++|+.+||.+....... .++|||++.. ....++..+...|+||
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~-------------~~thvi~~~~~~~~~~~~~~~~~~~~i 67 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSK-------------TTTHVIVGSPEGGKLELLLAIALGIPI 67 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCcc-------------ceeEEEEcCCCCccHHHHHHHHcCCCC
Confidence 489999999999 766667779999999999998664310 2345555544 4444588999999999
Q ss_pred echHHHHHHHhcC
Q 002242 785 LKAKWLTDSVAAG 797 (948)
Q Consensus 785 LKpsWLkDSiqAG 797 (948)
|+++||.||++++
T Consensus 68 V~~~Wi~~~~~~~ 80 (80)
T smart00292 68 VTEDWLLDCLKAG 80 (80)
T ss_pred ccHHHHHHHHHCc
Confidence 9999999999875
No 6
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.83 E-value=1.2e-08 Score=81.17 Aligned_cols=71 Identities=28% Similarity=0.478 Sum_probs=57.9
Q ss_pred ceEEEEcCCC-chhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcceechHH
Q 002242 711 GIKFLLTGFS-SQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKW 789 (948)
Q Consensus 711 GLvFLLTGfs-s~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILKpsW 789 (948)
|+.|.++|.. ...+.+++++|+.+||.|..+.. ..++|||++......++..+...|+|||+++|
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~--------------~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~W 66 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVS--------------KKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEW 66 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEecccc--------------CCceEEEECCCCCchHHHHHHHcCCeEecHHH
Confidence 6789999998 55667799999999999987633 23567777766555558999999999999999
Q ss_pred HHHHHh
Q 002242 790 LTDSVA 795 (948)
Q Consensus 790 LkDSiq 795 (948)
|.||++
T Consensus 67 i~~~~~ 72 (72)
T cd00027 67 LLDCLK 72 (72)
T ss_pred HHHHhC
Confidence 999974
No 7
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.58 E-value=2.6e-07 Score=77.22 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=58.0
Q ss_pred CCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 828 HKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 828 ~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
.+++|+|+.|||.+ ....++++.++|+..||++.. +....++|||+...... ......+...+||+|.
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~----------~~~~~~thvI~~~~~~~-~~k~~~~~~~~i~iV~ 70 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSN----------SFSKKTTHVIVGNPNKR-TKKYKAAIANGIPIVS 70 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEES----------SSSTTSSEEEESSSHCC-CHHHHHHHHTTSEEEE
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEe----------ecccCcEEEEeCCCCCc-cHHHHHHHHCCCeEec
Confidence 35799999999966 556678999999999999963 23345678888866111 2234467778999999
Q ss_pred hHHHHHHH
Q 002242 907 ASWIIKSL 914 (948)
Q Consensus 907 sEWIIESI 914 (948)
.+||.+||
T Consensus 71 ~~Wi~~ci 78 (78)
T PF00533_consen 71 PDWIEDCI 78 (78)
T ss_dssp THHHHHHH
T ss_pred HHHHHHhC
Confidence 99999997
No 8
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.51 E-value=5.2e-07 Score=73.32 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=58.8
Q ss_pred CCCCCeEEEEec--CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeech
Q 002242 830 YIFGRVGIMLHG--KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPA 907 (948)
Q Consensus 830 ~LFdG~rfyL~G--K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vps 907 (948)
++|.|+.||+.| ....++.+.++|+..||+++..+.. ..++++|+.+....... ...+...++|+|+.
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~---------~~~thvi~~~~~~~~~~-~~~~~~~~~~iV~~ 70 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSS---------KTTTHVIVGSPEGGKLE-LLLAIALGIPIVTE 70 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCc---------cceeEEEEcCCCCccHH-HHHHHHcCCCCccH
Confidence 489999999999 3466689999999999999954421 03567777765543222 34566789999999
Q ss_pred HHHHHHHHhC
Q 002242 908 SWIIKSLHIG 917 (948)
Q Consensus 908 EWIIESImsg 917 (948)
+||.+||..+
T Consensus 71 ~Wi~~~~~~~ 80 (80)
T smart00292 71 DWLLDCLKAG 80 (80)
T ss_pred HHHHHHHHCc
Confidence 9999999753
No 9
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.35 E-value=4.7e-07 Score=75.52 Aligned_cols=63 Identities=19% Similarity=0.423 Sum_probs=50.3
Q ss_pred eEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcceechHH
Q 002242 712 IKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKW 789 (948)
Q Consensus 712 LvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILKpsW 789 (948)
+++.+|||...++.+|.++|+.+||.+..+.. ..++|+|| ....+.||-.|...|+|||+|+|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt--------------~~~THLI~-~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLT--------------KKTTHLIC-SSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSS--------------TT-SEEEE-ES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEecccc--------------CCceEEEE-eCCCcHHHHHHHHCCCcEECCCC
Confidence 47899999998888899999999999987732 25678998 35789999999999999999999
No 10
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.33 E-value=2.4e-06 Score=67.87 Aligned_cols=69 Identities=13% Similarity=0.295 Sum_probs=54.6
Q ss_pred CeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHH
Q 002242 834 RVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWII 911 (948)
Q Consensus 834 G~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWII 911 (948)
|+.|||.|.. ..++.|.++|+..||++...+. ..++++|+.+...... ...+...++|+|+.+||.
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~----------~~~thvI~~~~~~~~~--~~~~~~~~~~iV~~~Wi~ 68 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVS----------KKTTHVIVGSDAGPKK--LLKAIKLGIPIVTPEWLL 68 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEecccc----------CCceEEEECCCCCchH--HHHHHHcCCeEecHHHHH
Confidence 6899999954 6778999999999999995442 2467888886664322 456778899999999999
Q ss_pred HHH
Q 002242 912 KSL 914 (948)
Q Consensus 912 ESI 914 (948)
+|+
T Consensus 69 ~~~ 71 (72)
T cd00027 69 DCL 71 (72)
T ss_pred HHh
Confidence 997
No 11
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.30 E-value=2.7e-06 Score=101.98 Aligned_cols=147 Identities=22% Similarity=0.295 Sum_probs=112.0
Q ss_pred ccccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhc
Q 002242 701 RKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAV 780 (948)
Q Consensus 701 ~~~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAs 780 (948)
...+++++|.|+.+++|||...++.+|..+|-++||+.+.... ..+++|++.+ ...|.||-+|+--
T Consensus 96 ~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~-------------s~v~~~~~~~-~~~~~kYe~al~w 161 (811)
T KOG1929|consen 96 RDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLS-------------SDVNSLKILP-EVKTEKYEQALKW 161 (811)
T ss_pred hhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhh-------------hhhheeeecc-ccchHHHHHHHhh
Confidence 3568999999999999999998889999999999999986633 3344555554 4455999999999
Q ss_pred CcceechHHHHHHHhcCCCCCCCcccccCc-ccc--ccccC----CCc-------------------hhh-hccCCCCCC
Q 002242 781 NAFILKAKWLTDSVAAGSTVSPAKYMILSS-QAD--LKRTG----ITE-------------------PIC-RDNHKYIFG 833 (948)
Q Consensus 781 GaWILKpsWLkDSiqAGk~LPEekYeI~S~-ks~--~k~sr----I~~-------------------~vh-~k~~~~LFd 833 (948)
+++|++.+|+.+|+..+..+++..|++... ... +..+. +.. .+. .....++.+
T Consensus 162 n~~v~~~~w~~~s~~~~~~~~~~~~e~~~~~~~is~~~~~~~~~~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~ 241 (811)
T KOG1929|consen 162 NIPVVSDDWLFDSIEKTAVLETKPYEGAPVAEAISGPIGSTLPKEILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLD 241 (811)
T ss_pred CCccccHHHHhhhhcccccccccccccccccceeccCCccccccccccccchhhhccccchhcccccccchhhhhccccc
Confidence 999999999999999999999999987651 111 00000 000 000 011234789
Q ss_pred CeEEEEec-CCchhhhHHHHHHhcCceEE
Q 002242 834 RVGIMLHG-KPSFCTKFAVIVKHGGGQVF 861 (948)
Q Consensus 834 G~rfyL~G-K~sFkDkfsrIIKAGGGQVV 861 (948)
+|.+|+.| ...-++.+.++++.|||..+
T Consensus 242 ~c~v~~s~~~~~~~s~l~r~~~~g~~~~~ 270 (811)
T KOG1929|consen 242 DCLVETSGTTSRNRSALSRLSNNGGSLRF 270 (811)
T ss_pred cceeeecCCcccchhHhHHhhhcccceee
Confidence 99999998 55666899999999999988
No 12
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.14 E-value=1.4e-05 Score=96.03 Aligned_cols=177 Identities=17% Similarity=0.239 Sum_probs=132.5
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
...+.|+.|..||+...++.+|...|..+||.+..+.. ..++|+|.++. -+-||..+--.|++++
T Consensus 7 ~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t--------------~~~thli~~~~-~s~~~~~a~~~~~~~~ 71 (811)
T KOG1929|consen 7 SKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFT--------------PSVTHLIVGSV-TSSKYAAAHRFDIKVL 71 (811)
T ss_pred CcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccC--------------CcCceeecccc-cccchhhhhcCCCcee
Confidence 45689999999999988888899999999999987733 23567777754 3446688889999999
Q ss_pred chHHHHHHHhcCCCCCCCcccccCccccccccCCCchhhhccCCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeeh
Q 002242 786 KAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTL 864 (948)
Q Consensus 786 KpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktL 864 (948)
+.+||....+.+.. - ++-+..+ .... ...++.|.|+.|++.| ...-+.++..+|..-||+.+..|
T Consensus 72 ~~~wi~~~~d~~~~-~-~e~~~~~---------~l~~---~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L 137 (811)
T KOG1929|consen 72 DSSWIDYIYDLWLL-N-KEIRLLD---------PLRD---TMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSL 137 (811)
T ss_pred cchHHHHHHHHhhh-h-ccCccCc---------cchh---hhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhh
Confidence 99999999888776 3 3333322 1111 1345799999999999 55567899999999999999655
Q ss_pred hhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 865 HWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 865 a~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
... +-+|++-.+... +-..+|-+-+++++..+|+.+|+-.+.++|-.
T Consensus 138 ~s~----------v~~~~~~~~~~~--~kYe~al~wn~~v~~~~w~~~s~~~~~~~~~~ 184 (811)
T KOG1929|consen 138 SSD----------VNSLKILPEVKT--EKYEQALKWNIPVVSDDWLFDSIEKTAVLETK 184 (811)
T ss_pred hhh----------hheeeeccccch--HHHHHHHhhCCccccHHHHhhhhccccccccc
Confidence 422 334554444421 33446778899999999999999999888733
No 13
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.73 E-value=6.1e-05 Score=90.97 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=73.8
Q ss_pred ccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCc--c-hHHHHHHhhcC
Q 002242 705 KRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKL--K-TTKFLYGCAVN 781 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~--R-T~KfL~GIAsG 781 (948)
....|.|+.|++||-....+.+++++|+.+||+|...+. ..+++|++.+.. . +-|+--|...|
T Consensus 186 ~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssVs--------------~~T~lIvt~~ev~k~gsSKlkkAk~lg 251 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSVE--------------GVTCLVVSPAERERGGSSKIAEAMERG 251 (815)
T ss_pred cCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEccccc--------------cceEEEEcCccccccCccHHHHHHHcC
Confidence 445699999999998766677899999999999987643 123445555442 2 47899999999
Q ss_pred cceechHHHHHHHhcCCCCCCCccccc
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
++||+.+||.+|++.+..+++.+|.+.
T Consensus 252 IpIVsEd~L~d~i~~~k~~~~~~y~l~ 278 (815)
T PLN03122 252 IPVVREAWLIDSIEKQEAQPLEAYDVV 278 (815)
T ss_pred CcCccHHHHHHHHhcCCcccchhhhhc
Confidence 999999999999999999999999884
No 14
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.59 E-value=0.00052 Score=82.22 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=68.2
Q ss_pred ccccccceEEEE-cCCCchh-HHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCc
Q 002242 705 KRLIFQGIKFLL-TGFSSQK-EKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNA 782 (948)
Q Consensus 705 Ks~IF~GLvFLL-TGfss~k-eKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGa 782 (948)
-+.+|.|+.|.+ +|-..+- +.++.++|-.+||+|..-+.+. + ...|.+++ ...|.+...++..++
T Consensus 630 ~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~-~-----------~~ci~~a~-~et~~vk~~~~~~~c 696 (881)
T KOG0966|consen 630 ISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPS-D-----------TLCIATAG-KETTRVKAQAIKRSC 696 (881)
T ss_pred hhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCC-C-----------cceEEecc-ccchHHHHHHHhccC
Confidence 388999999986 7777654 5669999999999998664421 1 11223333 457778888999999
Q ss_pred ceechHHHHHHHhcCCCCCCCcc
Q 002242 783 FILKAKWLTDSVAAGSTVSPAKY 805 (948)
Q Consensus 783 WILKpsWLkDSiqAGk~LPEekY 805 (948)
-||+|.||.||.+..+++|...+
T Consensus 697 dVl~p~Wlldcc~~~~l~p~~P~ 719 (881)
T KOG0966|consen 697 DVLKPAWLLDCCKKQRLLPWLPR 719 (881)
T ss_pred ceeeHHHHHHHHhhhhccccccH
Confidence 99999999999999999887755
No 15
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.54 E-value=5.5e-05 Score=89.12 Aligned_cols=141 Identities=15% Similarity=0.240 Sum_probs=101.3
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
+..|++++...||+...++ ++..||..+||.|.-|. .++++|.|+.. ..-+||-+|+.- .|+.
T Consensus 116 ~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~--------------nsktthli~n~-s~gek~~~a~t~-~~~~ 178 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDT--------------NSKTTHLIANK-VEGEKQSIALVG-VPTM 178 (850)
T ss_pred chhhcCceeeeeccchhhH-HHHHHHHHhcceeEeee--------------ccCceEEEeec-ccceEEEEEeec-ccee
Confidence 5689999999999998655 79999999999998662 23566777763 445778777766 9999
Q ss_pred chHHHHHHHhcCCCCCCCcccccCccccccccCCCchhhhccCCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeeh
Q 002242 786 KAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTL 864 (948)
Q Consensus 786 KpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktL 864 (948)
+|.||.++.+...++.++-- -+. + ...-.-+.|.|+.|+++| +..-.+.+.+.++.-||....
T Consensus 179 rp~wv~~aw~~rn~~yfda~-~~~---------f----~d~hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~-- 242 (850)
T KOG3524|consen 179 RPDWVTEAWKHRNDSYFDAM-EPC---------F----VDKHRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAP-- 242 (850)
T ss_pred chHhhhhhhcCcchhhhhhh-ccc---------h----hhhhccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccC--
Confidence 99999999987766543311 110 0 001233799999999999 555557888999999998651
Q ss_pred hhhhccccccccceeEEEecCCcc
Q 002242 865 HWLVLSLETQKNIVGVIVAENERR 888 (948)
Q Consensus 865 a~l~qSldDqs~s~~yIIvedESs 888 (948)
+| ..+.|+|++++..
T Consensus 243 -------~d--~~cthvvv~e~~~ 257 (850)
T KOG3524|consen 243 -------SD--TLCTHVVVNEDND 257 (850)
T ss_pred -------CC--CCceeEeecCCcc
Confidence 11 2345777776654
No 16
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.42 E-value=0.00026 Score=87.15 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=76.5
Q ss_pred cccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC--cchHHHHHHhhcC
Q 002242 704 VKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK--LKTTKFLYGCAVN 781 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~--~RT~KfL~GIAsG 781 (948)
.+...|.|+.|.++|-......+++++|+.+||+|...+. ..+++||+.+. .+..|+-.|...|
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~--------------~~~t~l~tt~e~~k~~~kv~qAk~~~ 454 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVK--------------KDTNCLVVCGELDDEDAEMRKARRMK 454 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeecc--------------CCceEEEccHHhhhcchHHHHHHhcC
Confidence 5678899999999998776667899999999999987644 12345665543 4778899999999
Q ss_pred cceechHHHHHHHhcCCCCCCCcccccC
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMILS 809 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI~S 809 (948)
+|||+.+||.||+..+..+|+..|.+.+
T Consensus 455 ipIVsedwL~ds~~~~~~~p~~~y~~~~ 482 (981)
T PLN03123 455 IPIVREDYLVDCFKKKKKLPFDKYKLEA 482 (981)
T ss_pred CCcccHHHHHHHHhccccCcchhhhhcc
Confidence 9999999999999999999999997754
No 17
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=97.13 E-value=0.00044 Score=77.36 Aligned_cols=93 Identities=17% Similarity=0.318 Sum_probs=80.6
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
..|..|++|.||||....+.+|..-.-.||-+--.|- ...++|+||. -..|-||-.-.-.|--||
T Consensus 315 ~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW--------------~~gsThLICA-F~NTPKy~QV~g~Gg~IV 379 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDW--------------NAGSTHLICA-FPNTPKYRQVEGNGGTIV 379 (508)
T ss_pred HHhhhceEEEEecccCchHHHHHHHHHhhcccccCCc--------------CCCceeEEEe-cCCCcchhhcccCCceEe
Confidence 5689999999999999999999999999988776552 2357789987 347889999999999999
Q ss_pred chHHHHHHHhcCCCCCCCcccccCcccc
Q 002242 786 KAKWLTDSVAAGSTVSPAKYMILSSQAD 813 (948)
Q Consensus 786 KpsWLkDSiqAGk~LPEekYeI~S~ks~ 813 (948)
+-+||.+|.+..+.||...|++..+..+
T Consensus 380 ~keWI~~Cy~~kk~lp~rrYlm~~~~p~ 407 (508)
T KOG3226|consen 380 SKEWITECYAQKKLLPIRRYLMHAGKPW 407 (508)
T ss_pred eHHHHHHHHHHHhhccHHHHHhcCCCCC
Confidence 9999999999999999999999887655
No 18
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.91 E-value=0.00081 Score=77.61 Aligned_cols=92 Identities=24% Similarity=0.407 Sum_probs=66.7
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
.++|.|+.|.|+-=-. +.-|.=+|+..||.|..+. +..+.-.++.+. ..+|=|++.+..+++++ |---+
T Consensus 325 kslF~glkFfl~reVP--resL~fiI~s~GG~V~wd~---~~~g~~~~~~d~-~ITH~IvDrP~~~~~v~-----gR~Yv 393 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVP--RESLEFIIRSFGGKVSWDP---LGIGATYDESDE-RITHQIVDRPGQQTSVI-----GRTYV 393 (570)
T ss_pred HHHhhcceeeeeccCc--hHHHHHHHHHcCCceecCc---cCCCCccccccc-ceeeeeecccCccceee-----eeeee
Confidence 5799999999853322 3349999999999999884 222222222223 23566777776666654 56678
Q ss_pred chHHHHHHHhcCCCCCCCccccc
Q 002242 786 KAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 786 KpsWLkDSiqAGk~LPEekYeI~ 808 (948)
.|.||.||+-+|..+|-++|+.+
T Consensus 394 QPQWvfDsvNar~llpt~~Y~~G 416 (570)
T KOG2481|consen 394 QPQWVFDSVNARLLLPTEKYFPG 416 (570)
T ss_pred cchhhhhhccchhhccHhhhCCC
Confidence 99999999999999999999865
No 19
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=96.49 E-value=0.0065 Score=74.12 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=65.4
Q ss_pred cCCCCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchh-hhhHHHHhhcCcee
Q 002242 827 NHKYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVS-RHLRHCAFEKKIAM 904 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~S-r~Lk~~Arr~gIP~ 904 (948)
...+.|.|+.|.|.|+- ..+++|..+|+..||+|..++ +..+.+|+.+.+-... ..-...|++.||||
T Consensus 185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV----------s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpI 254 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV----------EGVTCLVVSPAERERGGSSKIAEAMERGIPV 254 (815)
T ss_pred ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc----------ccceEEEEcCccccccCccHHHHHHHcCCcC
Confidence 44568999999999942 356899999999999999655 2235566656441110 01245788999999
Q ss_pred echHHHHHHHHhCCccCCC
Q 002242 905 VPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 905 VpsEWIIESImsgkLLPf~ 923 (948)
|+-+||.+++-.++.+|+.
T Consensus 255 VsEd~L~d~i~~~k~~~~~ 273 (815)
T PLN03122 255 VREAWLIDSIEKQEAQPLE 273 (815)
T ss_pred ccHHHHHHHHhcCCcccch
Confidence 9999999999999888866
No 20
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=96.46 E-value=0.0093 Score=49.90 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=42.9
Q ss_pred eEEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHH
Q 002242 835 VGIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASW 909 (948)
Q Consensus 835 ~rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEW 909 (948)
+.|.+.| ...-++.+.+++++.||++...+. ..++++|...... .....|.+.|||+|+.+|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt----------~~~THLI~~~~~~---~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLT----------KKTTHLICSSPEG---KKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSS----------TT-SEEEEES--H---HHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEecccc----------CCceEEEEeCCCc---HHHHHHHHCCCcEECCCC
Confidence 4677888 444478999999999999996552 2467888754442 234468889999999999
No 21
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=96.04 E-value=0.013 Score=72.78 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=66.2
Q ss_pred cCCCCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceee
Q 002242 827 NHKYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMV 905 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~V 905 (948)
...+.|.|+.|.+.|+- ....+|.++|+..||++..++. ..+++||+..+-.-.......|++.+||||
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~----------~~~t~l~tt~e~~k~~~kv~qAk~~~ipIV 458 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVK----------KDTNCLVVCGELDDEDAEMRKARRMKIPIV 458 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeecc----------CCceEEEccHHhhhcchHHHHHHhcCCCcc
Confidence 45689999999999953 3237999999999999996552 123467766432211122446788899999
Q ss_pred chHHHHHHHHhCCccCCCCC
Q 002242 906 PASWIIKSLHIGMLLPQTQD 925 (948)
Q Consensus 906 psEWIIESImsgkLLPf~~d 925 (948)
+-+||.+|+..+..+|+...
T Consensus 459 sedwL~ds~~~~~~~p~~~y 478 (981)
T PLN03123 459 REDYLVDCFKKKKKLPFDKY 478 (981)
T ss_pred cHHHHHHHHhccccCcchhh
Confidence 99999999999998888744
No 22
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.014 Score=66.36 Aligned_cols=92 Identities=18% Similarity=0.338 Sum_probs=67.0
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCC-CCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcce
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIP-PPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip-~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWI 784 (948)
..||.|++|.++.--. ..-|+=+|...||.|.+++- -.....+.. ..+.+|-||+.+...-| ..|..-
T Consensus 348 ~slFS~f~FyisreVp--~dsLefiilscGG~V~~~p~~~~i~~~~~v----D~~vth~i~drp~~~~k-----vegrtY 416 (591)
T COG5163 348 KSLFSGFKFYISREVP--GDSLEFIILSCGGSVVGSPCEADIHVSEKV----DEKVTHQIVDRPVMKNK-----VEGRTY 416 (591)
T ss_pred hhhhhceEEEEecccc--chHHHHHHHHcCCcccCchhhccCCchhhc----cchhhhhhccchhhhhh-----hcceee
Confidence 4689999999975432 23488999999999998743 111111222 23566778887654444 478889
Q ss_pred echHHHHHHHhcCCCCCCCccccc
Q 002242 785 LKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 785 LKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
+.|.||.||+..|...+-+.|..+
T Consensus 417 iQPQw~fDsiNkG~l~~~~~Y~~G 440 (591)
T COG5163 417 IQPQWLFDSINKGKLACVENYCVG 440 (591)
T ss_pred echHHHHhhhccccchhhhhcccc
Confidence 999999999999999999999755
No 23
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=94.50 E-value=0.048 Score=67.04 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=57.7
Q ss_pred CCCCCCeEEEEecCCchhhhHHHHHHhcCceEEe-ehhh--------------hhccccccccceeEEEecCCcchhhhh
Q 002242 829 KYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFK-TLHW--------------LVLSLETQKNIVGVIVAENERRVSRHL 893 (948)
Q Consensus 829 ~~LFdG~rfyL~GK~sFkDkfsrIIKAGGGQVVk-tLa~--------------l~qSldDqs~s~~yIIvedESs~Sr~L 893 (948)
..||+||.|+|.+-.+-......-+..+||.|+. .|.- +..+--....+-+..|+.+.- .|.+
T Consensus 923 kniFd~cvF~lTsa~~sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth--~Rt~ 1000 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANRSDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTH--YRTH 1000 (1176)
T ss_pred cchhcceeEEEeccccchhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhh--hHHH
Confidence 4899999999998332223334444446777763 1111 000111122344445555432 4656
Q ss_pred HH-HHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 894 RH-CAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 894 k~-~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
+| -+..+|||||...||-+|+..++++||.
T Consensus 1001 KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~ 1031 (1176)
T KOG3548|consen 1001 KYLEALARGIPCVHNTFIQACGEQNRCVDYT 1031 (1176)
T ss_pred HHHHHHHcCCCcccHHHHHHHHhccccccch
Confidence 65 5667799999999999999999999976
No 24
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=94.43 E-value=0.11 Score=57.08 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=60.3
Q ss_pred ccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC-cchHHHHHHhhcCcc
Q 002242 705 KRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK-LKTTKFLYGCAVNAF 783 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~-~RT~KfL~GIAsGaW 783 (948)
...+|.|..|.+||--...|.|++++|+.+||+|.+.+. .++.+||+++. ..+-|..-|-.-|++
T Consensus 229 ~~~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs--------------~~t~~lv~g~~~~~ssK~~kA~~~gi~ 294 (313)
T PRK06063 229 GRPLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVD--------------RDTSLVVCNDPAPEQGKGYHARQLGVP 294 (313)
T ss_pred CCcccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccc--------------cCccEEEECCCCCcccHHHHHHHcCCc
Confidence 356899999999998766778899999999999987754 24567887755 556799999999999
Q ss_pred eechHHHHHHH
Q 002242 784 ILKAKWLTDSV 794 (948)
Q Consensus 784 ILKpsWLkDSi 794 (948)
||+-.=..+-+
T Consensus 295 ii~e~~f~~ll 305 (313)
T PRK06063 295 VLDEAAFLELL 305 (313)
T ss_pred cccHHHHHHHH
Confidence 99876554443
No 25
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=94.28 E-value=0.1 Score=62.87 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=58.0
Q ss_pred cccccceEEEEcC-CCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcce
Q 002242 706 RLIFQGIKFLLTG-FSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 706 s~IF~GLvFLLTG-fss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWI 784 (948)
...|.|.+|++|| |..-.|.+++++|+.+||+|.+.+. .++..||+++..- -|+--|-.-|++|
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVS--------------kktd~LV~G~~aG-sKl~KA~~LGI~I 655 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVT--------------KYLDFLLVGEKAG-LKLKKANNLGIKI 655 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEecccc--------------CCCcEEEECCCCC-chHHHHHHcCCEE
Confidence 3569999999999 4444688899999999999998755 2455677775532 4888999999999
Q ss_pred echHHHHHHH
Q 002242 785 LKAKWLTDSV 794 (948)
Q Consensus 785 LKpsWLkDSi 794 (948)
++-+.+.+-+
T Consensus 656 i~e~~f~~~l 665 (669)
T PRK14350 656 MSLFDIKSYV 665 (669)
T ss_pred ecHHHHHHHh
Confidence 9988776643
No 26
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=94.18 E-value=0.026 Score=67.68 Aligned_cols=143 Identities=9% Similarity=-0.141 Sum_probs=115.9
Q ss_pred chHHHHHHhhcCcceechHHHHHHHhcCCCC-CCCcccccCccccccccCCCchhhhccCCCCCCCeEEEEec--CCchh
Q 002242 770 KTTKFLYGCAVNAFILKAKWLTDSVAAGSTV-SPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHG--KPSFC 846 (948)
Q Consensus 770 RT~KfL~GIAsGaWILKpsWLkDSiqAGk~L-PEekYeI~S~ks~~k~srI~~~vh~k~~~~LFdG~rfyL~G--K~sFk 846 (948)
.++|+.-.++.++|+..+.|..++.+-...- ..++|.++. .+ ++.+.+..-+-...|+++.++|.+ +..++
T Consensus 35 ~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E---s~---r~sq~vqe~lk~k~~~~~~~~l~~s~~s~p~ 108 (684)
T KOG4362|consen 35 SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE---SP---RFSQLSKESLKTKSASQCDTGLEYSFKSLPA 108 (684)
T ss_pred chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc---cc---hHHHHHHHhcCCccccccccccccccccCCc
Confidence 6899999999999999999999977666554 678888775 22 333444444667899999999998 67888
Q ss_pred hhHHHHHHhcCceEEe--------------ehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHH
Q 002242 847 TKFAVIVKHGGGQVFK--------------TLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIK 912 (948)
Q Consensus 847 DkfsrIIKAGGGQVVk--------------tLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIE 912 (948)
++......|++++++. +...++.++.|+..+++++.++.-. .++.....+...+-++.+|+..
T Consensus 109 ~k~~~~~~~~~~e~l~~qek~~~~~~~ti~s~~~~~r~~~d~~~s~q~~n~~~~~---~~~sk~~~q~Qp~~~~~~~f~~ 185 (684)
T KOG4362|consen 109 KKEFNLPEHLSDEVLIIQEKPYDNAANTIISSEEHARKLSDISLSTQPSNLETVR---TLESKERIQPQPNPAPSDVFPD 185 (684)
T ss_pred HhhhhhhhccchhhhhcccccccccccccccccccccccccccCCCCcccccccc---ccCChhhhccCCCCCccccchH
Confidence 9999999999999883 4457788899999999999877554 4455556677899999999999
Q ss_pred HHHhCCccC
Q 002242 913 SLHIGMLLP 921 (948)
Q Consensus 913 SImsgkLLP 921 (948)
++|...++|
T Consensus 186 ~~~ese~~~ 194 (684)
T KOG4362|consen 186 EKMEAEELP 194 (684)
T ss_pred HHHHhhhcc
Confidence 999998888
No 27
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=94.09 E-value=0.12 Score=62.28 Aligned_cols=71 Identities=7% Similarity=-0.043 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEecC--CchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 829 KYIFGRVGIMLHGK--PSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 829 ~~LFdG~rfyL~GK--~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
...|.|..|.|.|+ ...++++.++|++.||+|..++. ..++|+|+++.+. + -...|+++||||++
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVS----------kktd~LV~G~~aG-s--Kl~KA~~LGI~Ii~ 657 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVT----------KYLDFLLVGEKAG-L--KLKKANNLGIKIMS 657 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEecccc----------CCCcEEEECCCCC-c--hHHHHHHcCCEEec
Confidence 35799999999994 34578999999999999997663 3478999875442 3 34579999999999
Q ss_pred hHHHHH
Q 002242 907 ASWIIK 912 (948)
Q Consensus 907 sEWIIE 912 (948)
-+.|.+
T Consensus 658 e~~f~~ 663 (669)
T PRK14350 658 LFDIKS 663 (669)
T ss_pred HHHHHH
Confidence 999887
No 28
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=93.45 E-value=0.22 Score=60.14 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=59.6
Q ss_pred cccceEEEEcCCCch-hHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcceec
Q 002242 708 IFQGIKFLLTGFSSQ-KEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILK 786 (948)
Q Consensus 708 IF~GLvFLLTGfss~-keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILK 786 (948)
.|.|+.|++||.-.. .|.++.++|+.+||+|.+.+. .++.+||++... +-|..-|-.-|++||+
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs--------------~kt~~lv~G~~~-gsK~~kA~~lgI~ii~ 654 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVS--------------KKTDLVVAGEAA-GSKLAKAQELGIEVLD 654 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCccc--------------CCCCEEEECCCC-ChHHHHHHHcCCeEEc
Confidence 499999999999865 678899999999999997755 245567777542 2689999999999999
Q ss_pred hHHHHHHHhc
Q 002242 787 AKWLTDSVAA 796 (948)
Q Consensus 787 psWLkDSiqA 796 (948)
-+-+.+.+..
T Consensus 655 E~~f~~~l~~ 664 (665)
T PRK07956 655 EEEFLRLLGE 664 (665)
T ss_pred HHHHHHHHhc
Confidence 8887776654
No 29
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=93.35 E-value=0.19 Score=55.29 Aligned_cols=74 Identities=8% Similarity=0.062 Sum_probs=57.8
Q ss_pred CCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechH
Q 002242 830 YIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPAS 908 (948)
Q Consensus 830 ~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsE 908 (948)
+||.|.+|.|.|+- ..++++..+|+..||+|-.++.+ .++|+|+.+....+. -...|+++|||+++-+
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~----------~t~~lv~g~~~~~ss-K~~kA~~~gi~ii~e~ 299 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDR----------DTSLVVCNDPAPEQG-KGYHARQLGVPVLDEA 299 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCcccc----------CccEEEECCCCCccc-HHHHHHHcCCccccHH
Confidence 57999999999954 35689999999999999976632 467999886554322 3457999999999988
Q ss_pred HHHHHH
Q 002242 909 WIIKSL 914 (948)
Q Consensus 909 WIIESI 914 (948)
=|.+-|
T Consensus 300 ~f~~ll 305 (313)
T PRK06063 300 AFLELL 305 (313)
T ss_pred HHHHHH
Confidence 887744
No 30
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=93.33 E-value=0.063 Score=62.73 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=57.4
Q ss_pred ccCCCCCCCeEEEEecCCchhhhHHHHHHhcCceEEee-h-hhhhccccccccceeEEEecCCcchhhhhHHHHhhcCce
Q 002242 826 DNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKT-L-HWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIA 903 (948)
Q Consensus 826 k~~~~LFdG~rfyL~GK~sFkDkfsrIIKAGGGQVVkt-L-a~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP 903 (948)
....+||.|+.|||.-..+ ++-|.-||.++||.|.-. + +...-..+|.++ +..|| +-+.-. . ..-|.-
T Consensus 322 s~~kslF~glkFfl~reVP-resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~I-TH~Iv-DrP~~~---~----~v~gR~ 391 (570)
T KOG2481|consen 322 SSHKSLFSGLKFFLNREVP-RESLEFIIRSFGGKVSWDPLGIGATYDESDERI-THQIV-DRPGQQ---T----SVIGRT 391 (570)
T ss_pred hhHHHHhhcceeeeeccCc-hHHHHHHHHHcCCceecCccCCCCcccccccce-eeeee-cccCcc---c----eeeeee
Confidence 4678999999999987554 589999999999999942 1 111111222222 33454 322210 1 112444
Q ss_pred eechHHHHHHHHhCCccCCC
Q 002242 904 MVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 904 ~VpsEWIIESImsgkLLPf~ 923 (948)
-|-..||++||-++.|||..
T Consensus 392 YvQPQWvfDsvNar~llpt~ 411 (570)
T KOG2481|consen 392 YVQPQWVFDSVNARLLLPTE 411 (570)
T ss_pred eecchhhhhhccchhhccHh
Confidence 57789999999999999954
No 31
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=93.17 E-value=0.26 Score=59.72 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=60.9
Q ss_pred cccccceEEEEcCCCch-hHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcce
Q 002242 706 RLIFQGIKFLLTGFSSQ-KEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~-keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWI 784 (948)
...|.|.+|+.||.-.. .|.+++++|+.+||+|.+.+. .++..||++...-.-|+--|-..|++|
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs--------------~kt~~Lv~G~~~g~sKl~kA~~lgi~i 672 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVS--------------GNTDYLVVGENPGQSKRDDAEANDVPT 672 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcC--------------CCccEEEEcCCCChhHHHHHHHCCCeE
Confidence 45699999999998865 678899999999999998755 235567766553345899999999999
Q ss_pred echHHHHHHHhc
Q 002242 785 LKAKWLTDSVAA 796 (948)
Q Consensus 785 LKpsWLkDSiqA 796 (948)
|+-+-+.+-++.
T Consensus 673 i~E~~f~~ll~~ 684 (689)
T PRK14351 673 LDEEEFEELLAE 684 (689)
T ss_pred ecHHHHHHHHHh
Confidence 988877665554
No 32
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=92.25 E-value=0.13 Score=58.87 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=58.4
Q ss_pred cCCCCCCCeEEEEecCCchhhhHHHHHHhcCceEEeehh---hhhccccccccceeEEEecCCcchhhhhHHHHhhcCce
Q 002242 827 NHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLH---WLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIA 903 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~sFkDkfsrIIKAGGGQVVktLa---~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP 903 (948)
...+||.|+.|||.-..+ .+.|.-||.++||.|+-... .++-...|. -+++-|++. .+++. +.-|..
T Consensus 346 s~~slFS~f~FyisreVp-~dsLefiilscGG~V~~~p~~~~i~~~~~vD~--~vth~i~dr-----p~~~~--kvegrt 415 (591)
T COG5163 346 SLKSLFSGFKFYISREVP-GDSLEFIILSCGGSVVGSPCEADIHVSEKVDE--KVTHQIVDR-----PVMKN--KVEGRT 415 (591)
T ss_pred chhhhhhceEEEEecccc-chHHHHHHHHcCCcccCchhhccCCchhhccc--hhhhhhccc-----hhhhh--hhccee
Confidence 557899999999987654 48899999999999995331 222222232 222223221 12322 122566
Q ss_pred eechHHHHHHHHhCCccCCCC
Q 002242 904 MVPASWIIKSLHIGMLLPQTQ 924 (948)
Q Consensus 904 ~VpsEWIIESImsgkLLPf~~ 924 (948)
-+-..||.+||-.|+|.|++.
T Consensus 416 YiQPQw~fDsiNkG~l~~~~~ 436 (591)
T COG5163 416 YIQPQWLFDSINKGKLACVEN 436 (591)
T ss_pred eechHHHHhhhccccchhhhh
Confidence 677899999999999999764
No 33
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=91.73 E-value=0.35 Score=58.25 Aligned_cols=67 Identities=24% Similarity=0.321 Sum_probs=53.0
Q ss_pred ccccceEEEEcCCCc-hhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 707 LIFQGIKFLLTGFSS-QKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 707 ~IF~GLvFLLTGfss-~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
..|.|..|++||.-. -.|.+++++|+.+||+|.+.+. .++..||++...-+ |+--|...|++||
T Consensus 583 ~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs--------------~kt~~lv~G~~~gs-Kl~kA~~lgi~ii 647 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVS--------------KKTDYVIAGEKAGS-KLAKAQELGIPII 647 (652)
T ss_pred CCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcC--------------CCccEEEECCCCCh-HHHHHHHcCCcEe
Confidence 469999999999765 3578899999999999997755 23556777654323 9999999999998
Q ss_pred chH
Q 002242 786 KAK 788 (948)
Q Consensus 786 Kps 788 (948)
+-+
T Consensus 648 ~E~ 650 (652)
T TIGR00575 648 NEE 650 (652)
T ss_pred chh
Confidence 754
No 34
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=91.63 E-value=0.4 Score=57.96 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=58.8
Q ss_pred ccccceEEEEcCCCc-hhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC-cchHHHHHHhhcCcce
Q 002242 707 LIFQGIKFLLTGFSS-QKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK-LKTTKFLYGCAVNAFI 784 (948)
Q Consensus 707 ~IF~GLvFLLTGfss-~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~-~RT~KfL~GIAsGaWI 784 (948)
.+|.|.+|++||--. -.|.+++.+|+.+||+|.+.+. .++..||++.. +. |+--|..-|+.|
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVS--------------kktD~vvaG~~aGS--Kl~kA~eLgv~i 656 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVS--------------KKTDYVVAGENAGS--KLAKAQELGVKI 656 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceec--------------ccccEEEEcCCCCh--HHHHHHHcCCeE
Confidence 789999999999877 3577899999999999998755 24566777755 45 999999999999
Q ss_pred echHHHHHH
Q 002242 785 LKAKWLTDS 793 (948)
Q Consensus 785 LKpsWLkDS 793 (948)
+.-+++.+-
T Consensus 657 ~~E~~~~~l 665 (667)
T COG0272 657 IDEEEFLAL 665 (667)
T ss_pred ecHHHHHHh
Confidence 998887653
No 35
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=91.56 E-value=0.46 Score=57.43 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=57.9
Q ss_pred CCCCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechH
Q 002242 831 IFGRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPAS 908 (948)
Q Consensus 831 LFdG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsE 908 (948)
.|.|.+|.|.|+- -.++++..+|+..||.|..++. ..++|+|+++.+. + -...|+++||++++-+
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs----------~kt~~lv~G~~~g-s--K~~kA~~lgI~ii~E~ 656 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVS----------KKTDLVVAGEAAG-S--KLAKAQELGIEVLDEE 656 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCccc----------CCCCEEEECCCCC-h--HHHHHHHcCCeEEcHH
Confidence 4999999999964 2578999999999999996553 3468999887543 2 3457999999999999
Q ss_pred HHHHHHH
Q 002242 909 WIIKSLH 915 (948)
Q Consensus 909 WIIESIm 915 (948)
.|++-|-
T Consensus 657 ~f~~~l~ 663 (665)
T PRK07956 657 EFLRLLG 663 (665)
T ss_pred HHHHHHh
Confidence 9988663
No 36
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=90.75 E-value=0.73 Score=50.39 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=52.1
Q ss_pred cccccceEEEEcCCCc-hhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC--------cchHHHHH
Q 002242 706 RLIFQGIKFLLTGFSS-QKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK--------LKTTKFLY 776 (948)
Q Consensus 706 s~IF~GLvFLLTGfss-~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~--------~RT~KfL~ 776 (948)
...|.|..|+.||--. -.|.++.++|+.+||+|.+.+. .++..||++.. .-+-|.--
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs--------------~~t~~lV~G~~~~~~~~~~~~~~K~~k 283 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVT--------------KKTTYLVTNTKDIEDLNREEMSNKLKK 283 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcc--------------cCceEEEECCCcchhhcccCcChHHHH
Confidence 4679999999999875 3678899999999999987755 24566776632 12457777
Q ss_pred Hhhc-----CcceechH
Q 002242 777 GCAV-----NAFILKAK 788 (948)
Q Consensus 777 GIAs-----GaWILKps 788 (948)
|... |++||+-+
T Consensus 284 A~~l~~~g~~i~ii~E~ 300 (309)
T PRK06195 284 AIDLKKKGQNIKFLNEE 300 (309)
T ss_pred HHHHHhCCCCcEEecHH
Confidence 7665 99999754
No 37
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=90.45 E-value=0.77 Score=55.85 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=58.7
Q ss_pred CCCCCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeech
Q 002242 830 YIFGRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPA 907 (948)
Q Consensus 830 ~LFdG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vps 907 (948)
..|.|..|.|.|+- -.++++..+|+..||+|.+++ +..++|+|+++.+..| -...|+++||++++-
T Consensus 608 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sV----------s~kt~~Lv~G~~~g~s--Kl~kA~~lgi~ii~E 675 (689)
T PRK14351 608 DALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSV----------SGNTDYLVVGENPGQS--KRDDAEANDVPTLDE 675 (689)
T ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCc----------CCCccEEEEcCCCChh--HHHHHHHCCCeEecH
Confidence 46999999999953 356899999999999999655 2347899998765423 335789999999999
Q ss_pred HHHHHHHH
Q 002242 908 SWIIKSLH 915 (948)
Q Consensus 908 EWIIESIm 915 (948)
+.|++-|-
T Consensus 676 ~~f~~ll~ 683 (689)
T PRK14351 676 EEFEELLA 683 (689)
T ss_pred HHHHHHHH
Confidence 99988554
No 38
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=89.64 E-value=2.5 Score=46.31 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=54.2
Q ss_pred CCCCCCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcc-------hhhhhHHHHhh
Q 002242 829 KYIFGRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERR-------VSRHLRHCAFE 899 (948)
Q Consensus 829 ~~LFdG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs-------~Sr~Lk~~Arr 899 (948)
...|.|.+|.|.|+- --+++...+|+..||+|.+++. ..++|+|+++... .+. -...|++
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs----------~~t~~lV~G~~~~~~~~~~~~~~-K~~kA~~ 286 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVT----------KKTTYLVTNTKDIEDLNREEMSN-KLKKAID 286 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcc----------cCceEEEECCCcchhhcccCcCh-HHHHHHH
Confidence 357999999999953 3567999999999999997663 3478999886431 111 1235555
Q ss_pred c-----CceeechHHHHHHH
Q 002242 900 K-----KIAMVPASWIIKSL 914 (948)
Q Consensus 900 ~-----gIP~VpsEWIIESI 914 (948)
+ +|++++-+=|++-|
T Consensus 287 l~~~g~~i~ii~E~~f~~l~ 306 (309)
T PRK06195 287 LKKKGQNIKFLNEEEFLQKC 306 (309)
T ss_pred HHhCCCCcEEecHHHHHHHH
Confidence 5 99999887776643
No 39
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=89.37 E-value=0.94 Score=54.89 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=57.6
Q ss_pred CCCCCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeech
Q 002242 830 YIFGRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPA 907 (948)
Q Consensus 830 ~LFdG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vps 907 (948)
.+|.|..|.|.|+= --+++...+|++.||+|-.++. ..+||+|+++.+- | -...|.++||+++.-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVS----------kktD~vvaG~~aG-S--Kl~kA~eLgv~i~~E 659 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVS----------KKTDYVVAGENAG-S--KLAKAQELGVKIIDE 659 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceec----------ccccEEEEcCCCC-h--HHHHHHHcCCeEecH
Confidence 68999999999943 3457999999999999996553 3478999887663 3 445799999999999
Q ss_pred HHHHHHH
Q 002242 908 SWIIKSL 914 (948)
Q Consensus 908 EWIIESI 914 (948)
+|+.+-|
T Consensus 660 ~~~~~ll 666 (667)
T COG0272 660 EEFLALL 666 (667)
T ss_pred HHHHHhh
Confidence 9988643
No 40
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=87.82 E-value=1.4 Score=54.17 Aligned_cols=207 Identities=13% Similarity=0.211 Sum_probs=111.7
Q ss_pred ccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCC--CcCCcc-ccCCCCCCcEEECC---CCcchHHHHHHh
Q 002242 705 KRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPN--SQGKRC-SRSHSQQLPVVICP---KKLKTTKFLYGC 778 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pl--dk~kR~-aef~st~~~VVI~~---k~~RT~KfL~GI 778 (948)
+...|+-+.-..+|++..++..|.+-++-+=+.+..+.|++. -+.+++ +..-...--||+-- +...+-+|...+
T Consensus 481 ~p~~f~sfcrvg~g~s~~e~~~v~~klr~~w~~~~~~apP~s~l~~tk~~Pd~wI~P~~SiIlqikaa~i~~s~~f~tn~ 560 (881)
T KOG0966|consen 481 RPEKFCSFCRVGNGISQKERDTVREKLRGHWKPTSLEAPPESFLFGTKKIPDVWIDPDNSIILQIKAAEIVPSSNFVTNY 560 (881)
T ss_pred ccceeeEeeEecCCccHHHHHHHHHhhhhhcccccccCCCHHHHhcccCCCceeECCCCceEEEeehheeeecccccccc
Confidence 477888888899999987777788888877777666655221 122221 11111111222211 112333333322
Q ss_pred hc-----CcceechHHHHHHHhcCCCCC-------CCcccccCcccc-ccccCCCchhhhc--------cCCCCCCCeEE
Q 002242 779 AV-----NAFILKAKWLTDSVAAGSTVS-------PAKYMILSSQAD-LKRTGITEPICRD--------NHKYIFGRVGI 837 (948)
Q Consensus 779 As-----GaWILKpsWLkDSiqAGk~LP-------EekYeI~S~ks~-~k~srI~~~vh~k--------~~~~LFdG~rf 837 (948)
-- -.|=+--.| ++|+....+.+ -..|--.-.+.. ..+.+.+..+|.+ ..-.+|+|.-|
T Consensus 561 tLrfPr~ekvR~DK~W-~ec~tl~~l~~l~~~~~~d~~~~~kk~~~t~~~~k~~~~~i~~~~~~~~~~~~~s~if~gl~f 639 (881)
T KOG0966|consen 561 TLRFPRIEKVRLDKPW-HECLTLNELGDLVNVSKSDVEDKEKKKRDTLKVRKRTRKAIHDSAPNRSKVAKISNIFDGLEF 639 (881)
T ss_pred eeecceeeeeecCCcH-HHHhhHHHHHHHhccccCCcchhhhhcccchhhhhhhhhhhcccccchhcccchhhhhcCeeE
Confidence 11 112223334 44554433311 111110000001 1112223334421 23479999999
Q ss_pred EEec---CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHH
Q 002242 838 MLHG---KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSL 914 (948)
Q Consensus 838 yL~G---K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESI 914 (948)
++.. ..+-+.+|..||.+-||.++..+- .+ + -..++++..+++ + .++.+.+.+--++...|+.+|+
T Consensus 640 ~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~---p~-~----~~ci~~a~~et~--~-vk~~~~~~~cdVl~p~Wlldcc 708 (881)
T KOG0966|consen 640 CVLSGTSETHTKAKLEEIIVENGGKIVQNVG---PS-D----TLCIATAGKETT--R-VKAQAIKRSCDVLKPAWLLDCC 708 (881)
T ss_pred EEecCCcccccHHHHHHHHHHcCCEEEEcCC---CC-C----cceEEeccccch--H-HHHHHHhccCceeeHHHHHHHH
Confidence 9985 234468999999999999997552 11 1 123455565553 2 3333444478899999999999
Q ss_pred HhCCccCCC
Q 002242 915 HIGMLLPQT 923 (948)
Q Consensus 915 msgkLLPf~ 923 (948)
..++|+|.-
T Consensus 709 ~~~~l~p~~ 717 (881)
T KOG0966|consen 709 KKQRLLPWL 717 (881)
T ss_pred hhhhccccc
Confidence 999999954
No 41
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=87.59 E-value=0.96 Score=54.67 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCCCCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeech
Q 002242 830 YIFGRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPA 907 (948)
Q Consensus 830 ~LFdG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vps 907 (948)
..|.|..|.|.|+- --++++..+|+..||+|..++. ..++|+|+++.+. + -...|+++||++++-
T Consensus 583 ~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs----------~kt~~lv~G~~~g-s--Kl~kA~~lgi~ii~E 649 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVS----------KKTDYVIAGEKAG-S--KLAKAQELGIPIINE 649 (652)
T ss_pred CCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcC----------CCccEEEECCCCC-h--HHHHHHHcCCcEech
Confidence 46999999999963 3478999999999999997653 3468999887553 2 345789999999875
Q ss_pred HH
Q 002242 908 SW 909 (948)
Q Consensus 908 EW 909 (948)
+.
T Consensus 650 ~~ 651 (652)
T TIGR00575 650 EE 651 (652)
T ss_pred hh
Confidence 43
No 42
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=84.78 E-value=1.6 Score=50.19 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=60.4
Q ss_pred CCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 828 HKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 828 ~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
.++|+.|+.|.|.| ..+|+.+|..-.-+.||+.-. .+ -+.|+ ++|.....+. .+ ..+.-.|=.||+
T Consensus 314 l~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~p--DW-------~~gsT-hLICAF~NTP-Ky--~QV~g~Gg~IV~ 380 (508)
T KOG3226|consen 314 LSKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQP--DW-------NAGST-HLICAFPNTP-KY--RQVEGNGGTIVS 380 (508)
T ss_pred HHHhhhceEEEEecccCchHHHHHHHHHhhcccccC--Cc-------CCCce-eEEEecCCCc-ch--hhcccCCceEee
Confidence 46899999999999 788899999888899999652 22 23344 5554554442 12 134444779999
Q ss_pred hHHHHHHHHhCCccC
Q 002242 907 ASWIIKSLHIGMLLP 921 (948)
Q Consensus 907 sEWIIESImsgkLLP 921 (948)
-+||.+|--..++||
T Consensus 381 keWI~~Cy~~kk~lp 395 (508)
T KOG3226|consen 381 KEWITECYAQKKLLP 395 (508)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999999
No 43
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=72.49 E-value=5.8 Score=49.72 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=117.0
Q ss_pred cccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCc-------chHHHHH
Q 002242 704 VKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKL-------KTTKFLY 776 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~-------RT~KfL~ 776 (948)
-++.+|.|+.|+.-|-..+...|++.+-..+||..-... -..++..+|+.... ++.|
T Consensus 43 t~~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~-------------~rs~T~~ii~~~l~a~~vk~~~~~~--- 106 (1016)
T KOG2093|consen 43 TGSSSFSGISISVNGSTDESANELKLQNMFHTGASAASY-------------ERSGTENIIAQGLPADLVKGFTIPK--- 106 (1016)
T ss_pred CCcceeeeeeeccCCccccchHHHhhhhhhccccccccc-------------ccccceeeecccchHHHhccccchh---
Confidence 468899999999999888777779998889988775221 12245566665431 3333
Q ss_pred HhhcCcceechHHHHHHHhcCCCCCCCcccccCccccccccC-CCc-----hhh-hccCCCCCCCeEEEEecCCchhh-h
Q 002242 777 GCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTG-ITE-----PIC-RDNHKYIFGRVGIMLHGKPSFCT-K 848 (948)
Q Consensus 777 GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~sr-I~~-----~vh-~k~~~~LFdG~rfyL~GK~sFkD-k 848 (948)
...+.|+.+|.+.|+.+.+..|.+..+++..+--- +.. .++ .-...++|-.+.|+|-|-..... +
T Consensus 107 -------~~~~e~iie~~~~~~~~~~~~~~~~t~~~h~q~~~~~~~~~~~~D~q~~~~~~ki~~~n~ikinG~~E~~~~d 179 (1016)
T KOG2093|consen 107 -------HISIEWIIECCENGMDVGYYPYQLYTGQSHEQAQLAFPVTSFPKDQQISSQSSKIFKNNVIKINGYNEPESLD 179 (1016)
T ss_pred -------hhcHHHHHHHHhccCccccccceeeccchhcccccCCCcccCCccccccccchhccccceeeecCCCCccccc
Confidence 45789999999999999999998766544421111 110 100 11456899999999999332222 2
Q ss_pred HHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHHhCCccCCCCCC--
Q 002242 849 FAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQDK-- 926 (948)
Q Consensus 849 fsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~~d~-- 926 (948)
+. -+--|+. .+....-++-+..+++.|... +..-.+.-.+...+..|+++.++.-...++..--
T Consensus 180 le-----pp~gv~~--d~~~~~~~~~rd~v~~~l~~~-------~l~n~~f~n~~~~sP~~~~~k~~~a~~~~~~~~Ss~ 245 (1016)
T KOG2093|consen 180 LE-----PPSGVLH--DKAEDDSTSARDHVDHELAGN-------LLLNKRFVNIENTSPDWIVDKELTAHTGTGQNYSSE 245 (1016)
T ss_pred cC-----CCccccc--chhhhhhhhHHHHHHHHhccc-------cccccccceeeecCchhhhhhhhhhccCCccccccc
Confidence 21 0111111 111111223344455566442 1122224588999999999999999999976433
Q ss_pred -CCCCC
Q 002242 927 -HIPSP 931 (948)
Q Consensus 927 -~~~~~ 931 (948)
.|+.+
T Consensus 246 ~~TS~~ 251 (1016)
T KOG2093|consen 246 MNTSGL 251 (1016)
T ss_pred cccccc
Confidence 45544
No 44
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=65.59 E-value=20 Score=42.24 Aligned_cols=135 Identities=13% Similarity=0.183 Sum_probs=80.3
Q ss_pred CCCchhH-HHHHHHHHHhCCEeecCCCCCCCcCCccc---cCCCCCCcEEECCCC-cchHHHHHHhhcCcceech-----
Q 002242 718 GFSSQKE-KEIEVLIQKYGGLVLLDIPPPNSQGKRCS---RSHSQQLPVVICPKK-LKTTKFLYGCAVNAFILKA----- 787 (948)
Q Consensus 718 Gfss~ke-KELtkLIe~LGG~V~sDip~pldk~kR~a---ef~st~~~VVI~~k~-~RT~KfL~GIAsGaWILKp----- 787 (948)
|+....+ .||+.|++.+|-.|..-.| .+..+. ........||++++. ..+.++|.- -.|+|.+..
T Consensus 170 ~~~~~~D~~elkrlL~~lGi~vn~v~p----~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~-~fGiP~i~~~PiG~ 244 (511)
T TIGR01278 170 GFHHRHDLIELRRLLKTLGIEVNVVAP----WGASIADLARLPAAWLNICPYREIGLMAAEYLKE-KFGQPYITTTPIGV 244 (511)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeC----CCCCHHHHHhcccCcEEEEechHHHHHHHHHHHH-HhCCCcccccccCH
Confidence 4434333 5799999999988876545 111222 122445567788754 345555543 237777644
Q ss_pred ----HHHHHHHhc----CCCCCCCcccccCccccccccCCCchhhhcc-CCCCCCCeEEEEecCCchhhhHHHHHH-hcC
Q 002242 788 ----KWLTDSVAA----GSTVSPAKYMILSSQADLKRTGITEPICRDN-HKYIFGRVGIMLHGKPSFCTKFAVIVK-HGG 857 (948)
Q Consensus 788 ----sWLkDSiqA----Gk~LPEekYeI~S~ks~~k~srI~~~vh~k~-~~~LFdG~rfyL~GK~sFkDkfsrIIK-AGG 857 (948)
.||++=.+. |.-.|.++|.....+.. ....++++. ....|.|.+++|.|....---+.++|. ..|
T Consensus 245 ~~T~~fL~~l~~~~~~~g~~~~~e~~i~~e~~~~-----~~~~~~~r~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElG 319 (511)
T TIGR01278 245 NATRRFIREIAALLNQAGADPYYESFILDGLSAV-----SQAAWFARSIDSQSLTGKRAFVFGDATHAVGMTKILARELG 319 (511)
T ss_pred HHHHHHHHHHHHHHhhcCCCCcHHHHHHhhhhhh-----hhHHHHHhhhhhHHhcCCeEEEEcCcHHHHHHHHHHHHhCC
Confidence 788777664 65555456643221100 011111111 123489999999998776668889997 899
Q ss_pred ceEEe
Q 002242 858 GQVFK 862 (948)
Q Consensus 858 GQVVk 862 (948)
.+|+.
T Consensus 320 ~~vv~ 324 (511)
T TIGR01278 320 IHIVG 324 (511)
T ss_pred CEEEe
Confidence 99985
No 45
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.04 E-value=31 Score=43.90 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=47.4
Q ss_pred eEEEEecCCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHH-HHhhcCceeechHHHHHH
Q 002242 835 VGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRH-CAFEKKIAMVPASWIIKS 913 (948)
Q Consensus 835 ~rfyL~GK~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~-~Arr~gIP~VpsEWIIES 913 (948)
.++.+.+... ...+.+.++..||.+-.. ...++ ++|+. ...|.++. +|--.|+|+|+..||.+|
T Consensus 660 ~~~lfs~~~~-~~~~k~~~k~lg~s~~ss----------~~e~T-h~i~~---rirRT~k~Leai~~G~~ivT~~wL~s~ 724 (896)
T KOG2043|consen 660 IEVLFSDKND-GKNYKLAKKFLGGSVASS----------DSEAT-HFIAD---RIRRTLKFLEAISSGKPLVTPQWLVSS 724 (896)
T ss_pred eeeeeeeccC-chhhhhHHhhccceeecc----------cccce-eeeeh---hhhccHHHHhhhccCCcccchHHHHHH
Confidence 4444445321 134667777788777631 22234 44444 22344544 666779999999999999
Q ss_pred HHhCCccCCC
Q 002242 914 LHIGMLLPQT 923 (948)
Q Consensus 914 ImsgkLLPf~ 923 (948)
+..|.+++.+
T Consensus 725 ~k~g~~~dek 734 (896)
T KOG2043|consen 725 LKSGEKLDEK 734 (896)
T ss_pred hhccccccCc
Confidence 9999999865
No 46
>COG5275 BRCT domain type II [General function prediction only]
Probab=39.65 E-value=62 Score=35.61 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=30.4
Q ss_pred ccccccceEEEEcCCCch-hHHHHHHHHHHhCCEeecC
Q 002242 705 KRLIFQGIKFLLTGFSSQ-KEKEIEVLIQKYGGLVLLD 741 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~-keKELtkLIe~LGG~V~sD 741 (948)
+..-..|++|..||.... .|.+-+.||..|||+|+..
T Consensus 153 ~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~ 190 (276)
T COG5275 153 ERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAV 190 (276)
T ss_pred CcccccccEEEEecccccccchhHHHHHHHhCCeeecc
Confidence 345568999999999884 4556899999999999866
No 47
>COG5275 BRCT domain type II [General function prediction only]
Probab=38.05 E-value=93 Score=34.32 Aligned_cols=76 Identities=13% Similarity=0.046 Sum_probs=56.4
Q ss_pred CCCCCCCeEEEEec--CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceee
Q 002242 828 HKYIFGRVGIMLHG--KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMV 905 (948)
Q Consensus 828 ~~~LFdG~rfyL~G--K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~V 905 (948)
.+--+.|..|.|.| +.--++.-..+++..||.|-..+ +..+++||.+|.+-. .-.+.+++++|+.+
T Consensus 153 ~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~p----------SskTtflvlGdnaGP--~K~ekiKqlkIkai 220 (276)
T COG5275 153 ERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVP----------SSKTTFLVLGDNAGP--SKMEKIKQLKIKAI 220 (276)
T ss_pred CcccccccEEEEecccccccchhHHHHHHHhCCeeeccc----------ccceeEEEecCCCCh--HHHHHHHHhCCccc
Confidence 34567899999999 33445788899999999998533 345678888876642 23467999999999
Q ss_pred chHHHHHHHH
Q 002242 906 PASWIIKSLH 915 (948)
Q Consensus 906 psEWIIESIm 915 (948)
.-+=|..-|.
T Consensus 221 dEegf~~LI~ 230 (276)
T COG5275 221 DEEGFDSLIK 230 (276)
T ss_pred cHHHHHHHHh
Confidence 9888766553
No 48
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=30.61 E-value=35 Score=42.41 Aligned_cols=100 Identities=14% Similarity=0.314 Sum_probs=70.6
Q ss_pred HhhhcccccccccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcch
Q 002242 692 YVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKT 771 (948)
Q Consensus 692 ~~~~~~~~~~~~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT 771 (948)
-|-+||++. ++-+.|.|..|..=||++.+-.-+...-+..||+-..+ .+.++||+-++. ++
T Consensus 197 a~~~~f~d~---hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~~---------------d~~cthvvv~e~-~~ 257 (850)
T KOG3524|consen 197 AMEPCFVDK---HRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAPS---------------DTLCTHVVVNED-ND 257 (850)
T ss_pred hhccchhhh---hccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccCC---------------CCCceeEeecCC-cc
Confidence 366777755 89999999999999997644333555566677776543 234455655533 33
Q ss_pred HHHHHHhhcCcceechHHHHHHHhcCCCCCCCcccccCc
Q 002242 772 TKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSS 810 (948)
Q Consensus 772 ~KfL~GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ 810 (948)
+-.-.+.-...-+++-+|-.=+++.|-+.-+..|+.+..
T Consensus 258 ~~~p~~~s~~~~~vk~ewfw~siq~g~~a~e~~yl~~~~ 296 (850)
T KOG3524|consen 258 EVEPLAVSSNQVHVKKEWFWVSIQRGCCAIEDNYLLPTG 296 (850)
T ss_pred ccccccccccceeecccceEEEEecchhccccceecccc
Confidence 333456677788999999999999998888888887653
No 49
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=28.26 E-value=1.2e+02 Score=36.16 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCCchhH-HHHHHHHHHhCCEeecCCC--CCCCcCCccccCCCCCCcEEECCCCc-chHHHHHHhhcCcceec-------
Q 002242 718 GFSSQKE-KEIEVLIQKYGGLVLLDIP--PPNSQGKRCSRSHSQQLPVVICPKKL-KTTKFLYGCAVNAFILK------- 786 (948)
Q Consensus 718 Gfss~ke-KELtkLIe~LGG~V~sDip--~pldk~kR~aef~st~~~VVI~~k~~-RT~KfL~GIAsGaWILK------- 786 (948)
|+....+ .||+.|++.+|-.|..-.| .+.+..+ ........||+++... .+.++|.-= .|+|.+.
T Consensus 170 ~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~---~l~~A~~nivl~~~~g~~~A~~Lee~-fGiP~i~~~PiG~~ 245 (519)
T PRK02910 170 GFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLK---RLPAAWFNVVLYREIGESAARYLERE-FGQPYVKTVPIGVG 245 (519)
T ss_pred CCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH---hcccCcEEEEeCHHHHHHHHHHHHHH-hCCcccccccccHH
Confidence 4444333 5699999999998876655 1111111 1224456678888653 444555432 4777664
Q ss_pred --hHHHHHHHhc-CCCCCCC-cccccCccccccccCCCchhhhc-cCCCCCCCeEEEEecCCchhhhHHHHHH-hcCceE
Q 002242 787 --AKWLTDSVAA-GSTVSPA-KYMILSSQADLKRTGITEPICRD-NHKYIFGRVGIMLHGKPSFCTKFAVIVK-HGGGQV 860 (948)
Q Consensus 787 --psWLkDSiqA-Gk~LPEe-kYeI~S~ks~~k~srI~~~vh~k-~~~~LFdG~rfyL~GK~sFkDkfsrIIK-AGGGQV 860 (948)
-.||++=.+. |.-.+.. .|+-...+ .+.+. .++.+ .....|.|.+|+|.|....---+.++|. ..|.+|
T Consensus 246 ~T~~fL~~la~~~g~~~~~~e~~i~~~~~---~~~~l--~~~~~~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElGm~v 320 (519)
T PRK02910 246 ATARFIREVAELLNLDGADLEAFILDGLS---APSRL--PWFSRSVDSTYLTGKRVFVFGDATHAVAAARILSDELGFEV 320 (519)
T ss_pred HHHHHHHHHHHHhCCChhhhHHHHHHHHh---hhhhh--hHHHHhhhhHhhcCCEEEEEcCcHHHHHHHHHHHHhcCCeE
Confidence 2788776665 4323321 22211100 01111 11111 1125689999999998766667888887 799999
Q ss_pred Ee
Q 002242 861 FK 862 (948)
Q Consensus 861 Vk 862 (948)
+.
T Consensus 321 v~ 322 (519)
T PRK02910 321 VG 322 (519)
T ss_pred EE
Confidence 84
No 50
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=25.42 E-value=89 Score=35.74 Aligned_cols=126 Identities=14% Similarity=0.052 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCEeecCCC--CCCCcCCccccCCCCCCcEEECCCC-cchHHHHHHhhcCcceech---------HHHHH
Q 002242 725 KEIEVLIQKYGGLVLLDIP--PPNSQGKRCSRSHSQQLPVVICPKK-LKTTKFLYGCAVNAFILKA---------KWLTD 792 (948)
Q Consensus 725 KELtkLIe~LGG~V~sDip--~pldk~kR~aef~st~~~VVI~~k~-~RT~KfL~GIAsGaWILKp---------sWLkD 792 (948)
+||++|++.+|=.|....+ .+.+... ........+|+++.. ..+.++|-.- .|+|.++. .||++
T Consensus 178 ~ei~~lL~~~Gl~v~~~~~~~~t~~ei~---~~~~A~lnlv~~~~~~~~~A~~L~er-~GiP~~~~~~~G~~~t~~~l~~ 253 (415)
T cd01977 178 EVLQKYFERMGIQVLSTFTGNGTYDDLR---WMHRAKLNVVNCARSAGYIANELKKR-YGIPRLDVDGFGFEYCAESLRK 253 (415)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCHHHHH---hcccCCEEEEEchhHHHHHHHHHHHH-hCCCeEEeccCCHHHHHHHHHH
Confidence 5699999999977764433 1111111 122345667778654 4666777543 38888854 77776
Q ss_pred HHhc-CCCCCCCcccccCccccccccCCCchhhhccCCCCCCCeEEEEecCCchhhhHHHHHH-hcCceEEe
Q 002242 793 SVAA-GSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPSFCTKFAVIVK-HGGGQVFK 862 (948)
Q Consensus 793 SiqA-Gk~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LFdG~rfyL~GK~sFkDkfsrIIK-AGGGQVVk 862 (948)
=.+. |.-.+.+.+ ++... ...+.++. .....|.|.+++|.+....---+.+.+. ..|.+|+.
T Consensus 254 la~~~g~~~~~e~~-i~~~~-~~~r~~l~------~~~~~l~Gk~vai~~~~~~~~~la~~l~~elG~~v~~ 317 (415)
T cd01977 254 IGAFFGIEDRAEAV-IAEEM-AKWKPELD------WYKERLKGKKVCIWTGGPKLWHWTKVIEDELGMQVVA 317 (415)
T ss_pred HHHHhCcchhHHHH-HHHHH-HHHHHHHH------HHHHHcCCCEEEEECCCchHHHHHHHHHHhcCCEEEE
Confidence 5544 321111111 22110 00011111 1124678999999886655557778875 79999884
No 51
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=24.97 E-value=16 Score=31.85 Aligned_cols=21 Identities=38% Similarity=0.904 Sum_probs=13.1
Q ss_pred cchhhhhcccccccccccccc
Q 002242 294 EEICCSVVDRFRSRWFGGWTG 314 (948)
Q Consensus 294 ~~~~~~~~~rfrsrw~gg~~~ 314 (948)
+++|-.-----||-|+|||--
T Consensus 26 ~d~CPyq~~~~Rs~WLgGWRe 46 (55)
T COG3130 26 KEMCPYQTLNQRSQWLGGWRE 46 (55)
T ss_pred cccCCCcCchHHHHHHHHHHH
Confidence 456622222358889999963
No 52
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=24.32 E-value=2.7e+02 Score=32.70 Aligned_cols=76 Identities=12% Similarity=0.031 Sum_probs=50.1
Q ss_pred CCCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeech
Q 002242 829 KYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPA 907 (948)
Q Consensus 829 ~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vps 907 (948)
.+|-.|++|.+.|.. .-.|.+..-+-++|=.+--+|. ..+-+||++......--..-|.+.|||+++-
T Consensus 292 ~~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~-----------r~tslvv~n~~~~~~gk~~~a~~~gipl~~d 360 (377)
T PRK05601 292 KGLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLT-----------RQTSVVVCNQTRDLDGKAMHAQRKGIPLLSD 360 (377)
T ss_pred CccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccc-----------cceeEEEeCCCCCccchhhhhhhcCCCccCH
Confidence 358899999999943 3346676666666655543332 2245666766543222345678889999999
Q ss_pred HHHHHHHH
Q 002242 908 SWIIKSLH 915 (948)
Q Consensus 908 EWIIESIm 915 (948)
+=|...+-
T Consensus 361 ~~fl~~~~ 368 (377)
T PRK05601 361 VAFLAAVE 368 (377)
T ss_pred HHHHHHHH
Confidence 88887764
No 53
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=24.06 E-value=60 Score=35.71 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=43.5
Q ss_pred cchhhhhhhHhhhccccCcccceeehhchhhhHHHHHHhhCCCCchhhhHHHH--HHHHhhhhhhhhcccccC
Q 002242 90 NDQDKVGRREEKFKKVADVNDAVELSISASEALVIHELSNNEPDSEDLLTTIV--LEAALQVKQARLENQEDT 160 (948)
Q Consensus 90 ~~~d~~~~~~ek~~~~aDvndAvELSIaASEAlvI~e~~~~~s~s~~l~t~a~--lEaAL~vKqARle~~E~~ 160 (948)
+-|+|+++-|.. .|+++. |+ .|++.|..-+..--+.+++| +|+||.--++|+++||..
T Consensus 11 ~lf~RL~~ae~~-prD~eA-----------e~-lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~q 70 (247)
T PF09849_consen 11 DLFSRLKQAEAQ-PRDPEA-----------EA-LIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHhccCC-CCCHHH-----------HH-HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788877777 344332 33 58899988888877777775 599999999999999864
No 54
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=23.54 E-value=1.4e+02 Score=27.82 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=31.8
Q ss_pred eeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHH
Q 002242 878 VGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLH 915 (948)
Q Consensus 878 ~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESIm 915 (948)
..+||+.+....-...++.|+++|||++...+|..+|.
T Consensus 17 aP~VvAKG~g~~A~~I~~~A~e~~VPi~~~~~LAr~L~ 54 (82)
T TIGR00789 17 APKVVASGVGEVAERIIEIAKKHGIPIVEDPDLVDVLL 54 (82)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 45677777666556678899999999999999999997
No 55
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.07 E-value=3.1e+02 Score=31.82 Aligned_cols=137 Identities=16% Similarity=0.238 Sum_probs=73.8
Q ss_pred EEcCCCchh--HHHHHHHHHHhCCEeec--C------CCC-----CCCcCCcccc---CCCCCCcEEECCCC-cchHHHH
Q 002242 715 LLTGFSSQK--EKEIEVLIQKYGGLVLL--D------IPP-----PNSQGKRCSR---SHSQQLPVVICPKK-LKTTKFL 775 (948)
Q Consensus 715 LLTGfss~k--eKELtkLIe~LGG~V~s--D------ip~-----pldk~kR~ae---f~st~~~VVI~~k~-~RT~KfL 775 (948)
++.|+.... -.||++|++.+|=.|.. | .|. +...+....+ .......+|+++.. ..+.++|
T Consensus 165 li~~~~~~~d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i~~~~~A~~niv~~~~~~~~~a~~L 244 (435)
T cd01974 165 IIPGFDTYAGNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELKDAGNAKATLALQEYATEKTAKFL 244 (435)
T ss_pred EECCCCCCcchHHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHHHhhccCcEEEEECccccHHHHHHH
Confidence 334444322 36799999999955542 1 110 0001222222 22344677888854 4456655
Q ss_pred HHhhcCcceech----------HHHHHHHhc-CCCCCCCcccccCccccccccCCCchhhhccCCCCCCCeEEEEecCCc
Q 002242 776 YGCAVNAFILKA----------KWLTDSVAA-GSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPS 844 (948)
Q Consensus 776 ~GIAsGaWILKp----------sWLkDSiqA-Gk~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LFdG~rfyL~GK~s 844 (948)
--- .|+|.++. .||++=.+. |.-+| +.+ ... +.+..... ......|.|.+++|.|...
T Consensus 245 e~~-~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~-~~i--~~e-----r~~~~~~~--~~~~~~l~gkrv~i~g~~~ 313 (435)
T cd01974 245 EKK-CKVPVETLNMPIGVAATDEFLMALSELTGKPIP-EEL--EEE-----RGRLVDAM--TDSHQYLHGKKFALYGDPD 313 (435)
T ss_pred HHH-hCCCeeecCCCcChHHHHHHHHHHHHHhCCCCC-HHH--HHH-----HHHHHHHH--HHHHHhcCCCEEEEEcChH
Confidence 542 38877765 488876654 33222 111 110 11111100 0112367899999999765
Q ss_pred hhhhHHHHHHhcCceEEe
Q 002242 845 FCTKFAVIVKHGGGQVFK 862 (948)
Q Consensus 845 FkDkfsrIIKAGGGQVVk 862 (948)
.-=-|+++|...|..++.
T Consensus 314 ~~~~la~~L~elGm~v~~ 331 (435)
T cd01974 314 FLIGLTSFLLELGMEPVH 331 (435)
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 544678889999999964
Done!