Query 002242
Match_columns 948
No_of_seqs 71 out of 73
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 18:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kzy_C Tumor suppressor P53-bi 100.0 4.1E-32 1.4E-36 278.9 19.2 211 702-926 9-250 (259)
2 2nte_A BARD-1, BRCA1-associate 100.0 1E-31 3.5E-36 264.0 14.8 191 711-924 2-210 (210)
3 3al2_A DNA topoisomerase 2-bin 100.0 1E-28 3.5E-33 251.2 16.1 196 710-923 8-224 (235)
4 1l0b_A BRCA1; TANDEM-BRCT, thr 100.0 2.4E-28 8.2E-33 241.1 16.8 198 705-923 1-208 (229)
5 1t15_A Breast cancer type 1 su 100.0 3.1E-28 1.1E-32 236.6 16.7 195 710-924 3-207 (214)
6 3sqd_A PAX-interacting protein 100.0 7.9E-28 2.7E-32 242.2 16.5 201 704-923 9-214 (219)
7 3u3z_A Microcephalin; DNA repa 99.9 9.7E-28 3.3E-32 237.8 13.1 179 711-923 11-193 (199)
8 2etx_A Mediator of DNA damage 99.9 4E-27 1.4E-31 233.3 14.3 192 703-923 4-197 (209)
9 2vxb_A DNA repair protein RHP9 99.9 2.7E-26 9.1E-31 234.0 16.2 200 707-921 1-240 (241)
10 3l41_A BRCT-containing protein 99.9 1.7E-25 5.8E-30 226.4 11.1 193 709-919 6-206 (220)
11 3olc_X DNA topoisomerase 2-bin 99.8 2.7E-20 9.4E-25 195.2 17.1 177 706-923 103-280 (298)
12 3ii6_X DNA ligase 4; XRCC4, NH 99.8 3.4E-19 1.2E-23 183.4 19.2 194 704-923 6-259 (263)
13 1z56_C DNA ligase IV; DNA repa 99.8 1.5E-19 5.1E-24 183.4 4.7 198 705-923 2-257 (264)
14 3l3e_A DNA topoisomerase 2-bin 99.5 1.6E-13 5.3E-18 123.5 10.2 91 704-808 11-103 (107)
15 2ebw_A DNA repair protein REV1 99.4 2.2E-13 7.5E-18 119.7 9.3 89 704-808 8-96 (97)
16 3l46_A Protein ECT2; alternati 99.4 1.2E-13 4E-18 128.3 6.2 95 699-808 12-106 (112)
17 2d8m_A DNA-repair protein XRCC 99.4 4.6E-13 1.6E-17 124.9 10.2 93 706-813 20-112 (129)
18 4id3_A DNA repair protein REV1 99.4 7E-13 2.4E-17 114.2 9.3 89 704-807 3-91 (92)
19 2cou_A ECT2 protein; BRCT doma 99.4 5.9E-13 2E-17 121.3 6.0 93 702-809 6-98 (109)
20 1wf6_A Similar to S.pombe -RAD 99.3 1E-11 3.6E-16 116.1 12.0 112 679-810 17-129 (132)
21 3olc_X DNA topoisomerase 2-bin 99.2 4.1E-11 1.4E-15 126.0 10.7 96 702-811 193-288 (298)
22 3t7k_A RTT107, regulator of TY 99.2 2.3E-10 8E-15 119.4 15.6 191 710-920 21-242 (256)
23 3pc6_A DNA repair protein XRCC 98.9 3.1E-09 1.1E-13 97.8 8.9 88 706-808 5-95 (104)
24 4id3_A DNA repair protein REV1 98.9 6.1E-09 2.1E-13 89.6 8.9 83 828-923 4-87 (92)
25 3u3z_A Microcephalin; DNA repa 98.9 1.8E-09 6.1E-14 107.3 6.2 83 704-808 115-198 (199)
26 3ef1_A RNA polymerase II subun 98.9 2.1E-09 7.2E-14 119.6 7.0 91 702-807 346-441 (442)
27 3ef0_A RNA polymerase II subun 98.8 3.7E-09 1.3E-13 115.0 8.5 89 704-807 278-371 (372)
28 3pa6_A Microcephalin; BRCT dom 98.7 2.5E-08 8.7E-13 91.7 8.6 90 706-810 5-98 (107)
29 1wf6_A Similar to S.pombe -RAD 98.7 4.1E-08 1.4E-12 91.9 9.8 84 827-923 36-122 (132)
30 2ebw_A DNA repair protein REV1 98.7 2.7E-08 9.2E-13 87.3 8.0 83 827-923 8-91 (97)
31 1t15_A Breast cancer type 1 su 98.7 2E-08 6.7E-13 97.7 7.2 97 704-809 111-212 (214)
32 3l3e_A DNA topoisomerase 2-bin 98.7 4.4E-08 1.5E-12 88.1 8.8 88 827-924 11-99 (107)
33 2ep8_A Pescadillo homolog 1; A 98.7 4.2E-08 1.4E-12 89.4 8.2 92 705-806 9-100 (100)
34 1l0b_A BRCA1; TANDEM-BRCT, thr 98.6 3.4E-08 1.2E-12 97.6 7.5 99 705-811 114-216 (229)
35 3pc6_A DNA repair protein XRCC 98.6 1.8E-07 6E-12 86.2 9.5 85 827-923 3-90 (104)
36 2d8m_A DNA-repair protein XRCC 98.6 1.9E-07 6.5E-12 87.1 9.3 84 827-923 18-102 (129)
37 3pa6_A Microcephalin; BRCT dom 98.5 2.9E-07 1E-11 84.7 8.9 84 827-923 3-91 (107)
38 2nte_A BARD-1, BRCA1-associate 98.3 4.2E-07 1.4E-11 89.5 6.3 99 704-804 100-210 (210)
39 1z56_C DNA ligase IV; DNA repa 98.3 2E-07 6.7E-12 94.8 3.9 91 704-808 156-262 (264)
40 2cou_A ECT2 protein; BRCT doma 98.3 3.7E-07 1.3E-11 83.2 5.0 83 828-923 9-92 (109)
41 3pc7_A DNA ligase 3; DNA repai 98.3 9.9E-07 3.4E-11 79.6 7.0 77 826-922 11-87 (88)
42 2etx_A Mediator of DNA damage 98.2 2.2E-06 7.6E-11 85.1 9.0 91 706-809 113-203 (209)
43 2dun_A POL MU, DNA polymerase 98.2 4.1E-06 1.4E-10 80.7 10.3 90 828-929 7-107 (133)
44 2jw5_A DNA polymerase lambda; 98.2 4.7E-07 1.6E-11 82.9 3.4 90 705-808 8-104 (106)
45 2coe_A Deoxynucleotidyltransfe 98.2 2.7E-06 9.2E-11 80.4 8.3 85 827-923 16-109 (120)
46 1kzy_C Tumor suppressor P53-bi 98.2 2.2E-06 7.4E-11 88.5 8.0 96 705-805 152-249 (259)
47 3l46_A Protein ECT2; alternati 98.2 1.6E-06 5.4E-11 80.7 5.6 83 828-923 18-101 (112)
48 2ep8_A Pescadillo homolog 1; A 98.1 4.1E-06 1.4E-10 76.4 7.7 89 827-923 8-97 (100)
49 3pc7_A DNA ligase 3; DNA repai 98.1 3.9E-06 1.3E-10 75.7 6.8 74 706-803 14-88 (88)
50 3ii6_X DNA ligase 4; XRCC4, NH 98.1 6.2E-06 2.1E-10 85.2 8.9 82 829-923 8-91 (263)
51 2coe_A Deoxynucleotidyltransfe 98.1 1.8E-05 6E-10 74.9 10.2 89 706-808 18-114 (120)
52 2vxb_A DNA repair protein RHP9 98.0 1E-05 3.4E-10 82.9 8.5 91 830-923 1-112 (241)
53 2jw5_A DNA polymerase lambda; 98.0 5E-06 1.7E-10 76.1 4.9 87 827-923 7-99 (106)
54 1l7b_A DNA ligase; BRCT, autos 98.0 1E-05 3.5E-10 72.8 6.8 76 705-795 4-79 (92)
55 2k6g_A Replication factor C su 97.9 3E-05 1E-09 71.9 8.6 78 706-797 30-108 (109)
56 2cok_A Poly [ADP-ribose] polym 97.9 2.2E-05 7.6E-10 73.3 7.4 90 830-929 9-109 (113)
57 2dun_A POL MU, DNA polymerase 97.8 3.3E-05 1.1E-09 74.5 8.2 88 706-808 8-107 (133)
58 2ebu_A Replication factor C su 97.8 4.5E-05 1.5E-09 71.3 8.5 78 706-797 20-98 (112)
59 2cok_A Poly [ADP-ribose] polym 97.8 4.1E-05 1.4E-09 71.5 7.5 86 706-805 8-105 (113)
60 3ef0_A RNA polymerase II subun 97.7 8.2E-05 2.8E-09 81.2 9.5 83 827-922 278-366 (372)
61 3sqd_A PAX-interacting protein 97.7 4.3E-05 1.5E-09 77.2 6.2 97 705-807 119-218 (219)
62 2l42_A DNA-binding protein RAP 97.6 7E-05 2.4E-09 69.5 5.9 84 705-809 8-96 (106)
63 3al2_A DNA topoisomerase 2-bin 97.5 5.8E-05 2E-09 77.1 5.2 94 706-809 133-230 (235)
64 1l7b_A DNA ligase; BRCT, autos 97.5 0.00014 4.9E-09 65.5 6.6 75 828-915 4-79 (92)
65 2k6g_A Replication factor C su 97.5 0.00027 9.2E-09 65.5 8.6 77 829-917 30-108 (109)
66 3ef1_A RNA polymerase II subun 97.5 0.00025 8.6E-09 79.3 9.2 81 829-922 350-436 (442)
67 3huf_A DNA repair and telomere 97.3 0.0012 4E-08 71.6 11.6 184 709-916 113-303 (325)
68 2ebu_A Replication factor C su 97.3 0.0005 1.7E-08 64.2 7.4 76 829-916 20-97 (112)
69 2l42_A DNA-binding protein RAP 96.6 0.0014 4.8E-08 61.0 4.1 78 827-923 7-90 (106)
70 3l41_A BRCT-containing protein 96.2 0.0044 1.5E-07 63.1 5.3 77 831-923 5-82 (220)
71 1dgs_A DNA ligase; AMP complex 93.9 0.01 3.5E-07 69.5 0.0 78 706-798 585-662 (667)
72 1dgs_A DNA ligase; AMP complex 92.8 0.02 6.8E-07 67.1 0.0 78 830-920 586-664 (667)
73 2owo_A DNA ligase; protein-DNA 92.2 0.026 8.9E-07 66.2 0.0 74 707-795 596-670 (671)
74 2owo_A DNA ligase; protein-DNA 90.3 0.053 1.8E-06 63.6 0.0 72 830-914 596-669 (671)
75 4gns_A Chitin biosynthesis pro 84.0 6.3 0.00022 40.3 10.7 94 709-815 162-261 (290)
76 4gns_A Chitin biosynthesis pro 43.5 47 0.0016 34.1 7.0 82 831-921 161-247 (290)
77 2k2w_A Recombination and DNA r 32.9 42 0.0014 32.1 4.5 35 827-862 9-43 (118)
78 3ljm_A Coil Ser L9C; de novo d 30.2 17 0.00058 27.2 1.0 21 140-160 10-30 (31)
No 1
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.98 E-value=4.1e-32 Score=278.89 Aligned_cols=211 Identities=18% Similarity=0.287 Sum_probs=161.9
Q ss_pred cccccccccceEEEEcCCCch-----------------------------hHHHHHHHHHHhCCEeecCCCCCCCcCCcc
Q 002242 702 KYVKRLIFQGIKFLLTGFSSQ-----------------------------KEKEIEVLIQKYGGLVLLDIPPPNSQGKRC 752 (948)
Q Consensus 702 ~~~Ks~IF~GLvFLLTGfss~-----------------------------keKELtkLIe~LGG~V~sDip~pldk~kR~ 752 (948)
.+..+.||.|+.|++|+.... .+.+|+++|+.+||+|+.+.....
T Consensus 9 ~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~------ 82 (259)
T 1kzy_C 9 LPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQ------ 82 (259)
T ss_dssp CCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTT------
T ss_pred CCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccc------
Confidence 456788999999999999763 346799999999999998865110
Q ss_pred ccCCCCCCcEEECCCCcchHHHHHHhhcCcceechHHHHHHHhcCCCCCCCcccccCccccccccCCCchhhhccCCCCC
Q 002242 753 SRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIF 832 (948)
Q Consensus 753 aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LF 832 (948)
.+....+|||+++..||.|||+|+|.|+|||+++||.||+++|+++|+++|+++.+.+.. ..++ ..+...++||
T Consensus 83 --~~~~~~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~~-~~~~---~~~~~~~~LF 156 (259)
T 1kzy_C 83 --CNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLE-EQRI---LDWQPRENPF 156 (259)
T ss_dssp --TTTTCEEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCEEETT-TTEE---ECCCCCCCTT
T ss_pred --cccCCCeEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCCcccc-cchh---hhccccCCCC
Confidence 012234678999999999999999999999999999999999999999999998755432 1111 1122457899
Q ss_pred CCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHH
Q 002242 833 GRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWI 910 (948)
Q Consensus 833 dG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWI 910 (948)
+|++||+++.. .|.+.|..||+++||+|+..+....+..+.....+++||++.... .+...++++.+||+|+.+||
T Consensus 157 ~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~--~~~~~~a~~~~i~iVs~EWv 234 (259)
T 1kzy_C 157 QNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCP--ASVLKCAEALQLPVVSQEWV 234 (259)
T ss_dssp TTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCC--HHHHHHHHHHTCCEECHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCCh--HHHHHHHHhcCCCEecHHHH
Confidence 99999999954 688999999999999999876322111111124566777754322 34556889999999999999
Q ss_pred HHHHHhCCccCCCCCC
Q 002242 911 IKSLHIGMLLPQTQDK 926 (948)
Q Consensus 911 IESImsgkLLPf~~d~ 926 (948)
++||+.|++||++.++
T Consensus 235 ~~sI~~~~ll~~~~hp 250 (259)
T 1kzy_C 235 IQCLIVGERIGFKQHP 250 (259)
T ss_dssp HHHHHHTSCCCTTSSG
T ss_pred HHHHHhCCcCCCCcCc
Confidence 9999999999998654
No 2
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.97 E-value=1e-31 Score=263.99 Aligned_cols=191 Identities=19% Similarity=0.261 Sum_probs=154.1
Q ss_pred ceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCC--CcchHHHHHHhhcCcceechH
Q 002242 711 GIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPK--KLKTTKFLYGCAVNAFILKAK 788 (948)
Q Consensus 711 GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k--~~RT~KfL~GIAsGaWILKps 788 (948)
+++|++|||...++..|.++|+.+||.|..+.. ..++|||+.+ ..||+|||.|++.|+|||+++
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~--------------~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~ 67 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTEFD--------------STVTHVVVPGDAVQSTLKCMLGILNGCWILKFE 67 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESSCC--------------TTCCEEEESSSSCCCSHHHHHHHHTTCEEEETH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCC--------------CCCeEEEEcCCCcchHHHHHHHHhcCCEEecHH
Confidence 789999999987777899999999999987632 1356777665 589999999999999999999
Q ss_pred HHHHHHhcCCCCCCCcccccCccccccccCCCchhhhccCCCCCCCeEEEEecC--CchhhhHHHHHHhcCceEEee---
Q 002242 789 WLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGK--PSFCTKFAVIVKHGGGQVFKT--- 863 (948)
Q Consensus 789 WLkDSiqAGk~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LFdG~rfyL~GK--~sFkDkfsrIIKAGGGQVVkt--- 863 (948)
||.||+++|+++||++|++.+ .+.+.|+++. +..++||+|+.|||.|. ...++.|.+||+++||+|+..
T Consensus 68 Wl~~c~~~~~~~~e~~y~~~~---~~~~~r~~~~---~~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~ 141 (210)
T 2nte_A 68 WVKACLRRKVCEQEEKYEIPE---GPRRSRLNRE---QLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPK 141 (210)
T ss_dssp HHHHHHHHTSCCCGGGTBCTT---HHHHHHHHHH---TTCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCC
T ss_pred HHHHHHHcCCcCChhhccCCC---CChhhhhccc---cccccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCC
Confidence 999999999999999999985 2333333222 24578999999999984 456789999999999999952
Q ss_pred -----------hhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHHhCCccCCCC
Q 002242 864 -----------LHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQ 924 (948)
Q Consensus 864 -----------La~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~~ 924 (948)
+.+++.++.+++.|+.+||+.... .+.+..+++++|++|+.+||++||..++|||+++
T Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~---~~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~~ 210 (210)
T 2nte_A 142 PDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLC---NYHPERVRQGKVWKAPSSWFIDCVMSFELLPLDS 210 (210)
T ss_dssp GGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCS---SCCCSCSEETTEEEEEHHHHHHHHHHTSCCCSCC
T ss_pred CccccccccceeeeccCCCcccccceEEEEecccc---ccCHHHHhccCcccccHHHHHHHHHhCeeccCCC
Confidence 335555556667888898877533 2223346778999999999999999999999974
No 3
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.96 E-value=1e-28 Score=251.18 Aligned_cols=196 Identities=19% Similarity=0.189 Sum_probs=143.1
Q ss_pred cceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcceechHH
Q 002242 710 QGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKW 789 (948)
Q Consensus 710 ~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILKpsW 789 (948)
++++|++||+.+.++.++.++|+.|||.|..+... ...++|||+++..||+|||+|||+|+|||+++|
T Consensus 8 ~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~------------~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~w 75 (235)
T 3al2_A 8 KQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCF------------DPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSY 75 (235)
T ss_dssp CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSC------------CTTCCEEEESSCCCSHHHHHHHHTTCEEECTHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCC------------CCCCcEEEECCCCCCHHHHHHHHcCCcCccHHH
Confidence 67899999999877778999999999999753111 135789999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcccccCccccccccCCCc--------hhhh-----c-cC----CCCCCCeEEEEecCCchhhhHHH
Q 002242 790 LTDSVAAGSTVSPAKYMILSSQADLKRTGITE--------PICR-----D-NH----KYIFGRVGIMLHGKPSFCTKFAV 851 (948)
Q Consensus 790 LkDSiqAGk~LPEekYeI~S~ks~~k~srI~~--------~vh~-----k-~~----~~LFdG~rfyL~GK~sFkDkfsr 851 (948)
|.||+++|+++||++|+|.+.........++. +..+ + .. +++|+||+|||+++....+.|.+
T Consensus 76 l~~s~~~g~~l~E~~ye~~~~~~~d~~~~~~~~~~~l~~a~~r~R~~l~~~~~~g~~~~lF~g~~v~l~~~~~~~~~l~~ 155 (235)
T 3al2_A 76 LEACRTAGHFVQEEDYEWGSSSILDVLTGINVQQRRLALAAMRWRKKIQQRQESGIVEGAFSGWKVILHVDQSREAGFKR 155 (235)
T ss_dssp HHHHHHHTSCCCSGGGBTTSHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHTTTCCSSTTTTCEEEEECCHHHHHHHHH
T ss_pred HHHHHHcCCCCChhceeecCcchhccccCCChhhhHHHHHHHHHHHHHHhcccccccCCCCCCcEEEEecCCCcHHHHHH
Confidence 99999999999999999987432100011111 1111 1 11 68999999999998766789999
Q ss_pred HHHhcCceEEeehhhhhccccccccceeEEEecCCcc---hhhhhHHHHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 852 IVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERR---VSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 852 IIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs---~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
||++|||+|+....-. ...+ . ++++++-... ........+.+.||||++.+||.++|+.+++.+++
T Consensus 156 ii~agGg~vl~~~~~~--~~~~---~-t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~~~~~~ 224 (235)
T 3al2_A 156 LLQSGGAKVLPGHSVP--LFKE---A-THLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPPHVE 224 (235)
T ss_dssp HHHHTTCEECSSCCGG--GGGG---C-SEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSSCCCHH
T ss_pred HHHcCCcEEecCCCCC--cccc---C-ceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcCCCCChh
Confidence 9999999999543210 0111 1 2333332110 00112233456679999999999999999999877
No 4
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.96 E-value=2.4e-28 Score=241.14 Aligned_cols=198 Identities=15% Similarity=0.197 Sum_probs=139.4
Q ss_pred ccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC-----cchHHHHHHhh
Q 002242 705 KRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK-----LKTTKFLYGCA 779 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~-----~RT~KfL~GIA 779 (948)
|...+.+++|++|||...++..|.++|+.+||.|..+.. ..++|||+.+. .||.||++|++
T Consensus 1 ~~~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~--------------~~~THlI~~~~~~~~~~rt~K~~~a~~ 66 (229)
T 1l0b_A 1 KERAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVIT--------------EETTHVIIKTDAEFVCERTLKYFLGIA 66 (229)
T ss_dssp --CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCC--------------SSCCEEEECBCTTSEECCCHHHHHHHH
T ss_pred CCCCCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcC--------------CCCCEEEEcCCccccccccHHHHHHHH
Confidence 456789999999999987777899999999999986632 24677888776 79999999999
Q ss_pred cCcceechHHHHHHHhcCCCCCCCcccccCccccccccCC-Cchh-hhccCCCCCCCeEEEEecC--CchhhhHHHHHHh
Q 002242 780 VNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGI-TEPI-CRDNHKYIFGRVGIMLHGK--PSFCTKFAVIVKH 855 (948)
Q Consensus 780 sGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI-~~~v-h~k~~~~LFdG~rfyL~GK--~sFkDkfsrIIKA 855 (948)
.|+|||+++||.||+++|+++||++|++....... .. ..+. .+...+++|.|+.|||+|. ...++.|.+||++
T Consensus 67 ~g~~IV~~~Wl~~~~~~~~~~~e~~y~~~~~~~~~---~~~~~~~~~r~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~ 143 (229)
T 1l0b_A 67 GGKWIVSYSWVIKSIQERKLLSVHEFEVKGDVVTG---SNHQGPRRSRESQEKLFEGLQIYCCEPFTNMPKDELERMLQL 143 (229)
T ss_dssp TTCEEEETHHHHHHHTTTSCCCSGGGBCCEETTTC---SSSCHHHHHHHHC--CCTTCEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCcEecHHHHHHHHHCCCcCChHHeEeccccccc---cccccchhhhhhhhhhhcCceEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999987532210 00 0000 0113468999999999984 3557899999999
Q ss_pred cCceEEeehhhhhccccccccceeEEEecCCcc-hhhhhHHHHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 856 GGGQVFKTLHWLVLSLETQKNIVGVIVAENERR-VSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 856 GGGQVVktLa~l~qSldDqs~s~~yIIvedESs-~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
+||+|+..+.... +...++.+||+..... .....+..+++.++++|+.+||++||+.++++|++
T Consensus 144 ~GG~v~~~~~~~~----~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~~ 208 (229)
T 1l0b_A 144 CGASVVKELPLLT----RDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDLD 208 (229)
T ss_dssp TTCEEECSSSCGG----GCCSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCGG
T ss_pred CCCEEeCCccccc----ccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCCcc
Confidence 9999997664321 1122355666664421 11233445567899999999999999999999976
No 5
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.96 E-value=3.1e-28 Score=236.58 Aligned_cols=195 Identities=13% Similarity=0.204 Sum_probs=145.2
Q ss_pred cceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC-----cchHHHHHHhhcCcce
Q 002242 710 QGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK-----LKTTKFLYGCAVNAFI 784 (948)
Q Consensus 710 ~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~-----~RT~KfL~GIAsGaWI 784 (948)
++++|++|||...++..|.++|+.+||++..+.. ..++|||+.+. .||+||++|++.|+||
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~--------------~~~THli~~~~~~~~~~rt~k~~~a~~~g~~I 68 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLIT--------------EETTHVVMKTDAEFVCERTLKYFLGIAGGKWV 68 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCC--------------TTCCEEEECBCTTSEECCBHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhCCEEeCccC--------------CCCcEEEEeCCcccchhhhHHHHHHHhcCCEE
Confidence 4789999999987777899999999999986632 24567887766 7999999999999999
Q ss_pred echHHHHHHHhcCCCCCCCcccccCccccccccCCCchh--hhccCCCCCCCeEEEEecC--CchhhhHHHHHHhcCceE
Q 002242 785 LKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPI--CRDNHKYIFGRVGIMLHGK--PSFCTKFAVIVKHGGGQV 860 (948)
Q Consensus 785 LKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI~~~v--h~k~~~~LFdG~rfyL~GK--~sFkDkfsrIIKAGGGQV 860 (948)
|+++||.||+++|+++||++|++........ ...... ..+..+++|.|+.|||.|. ...++.|..||+++||+|
T Consensus 69 V~~~Wl~~~~~~~~~~~e~~y~~~~~~~~~~--~~~~~~~~r~~~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v 146 (214)
T 1t15_A 69 VSYFWVTQSIKERKMLNEHDFEVRGDVVNGR--NHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASV 146 (214)
T ss_dssp EETHHHHHHHHTTSCCCGGGGBCCEETTTBT--TCCHHHHHHTCTTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEE
T ss_pred eCHHHHHHHHHCCCcCChHHeEeeccccccc--cccchhhHhhcCCCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEE
Confidence 9999999999999999999999875321100 000000 0124578999999999984 345789999999999999
Q ss_pred EeehhhhhccccccccceeEEEecCCcch-hhhhHHHHhhcCceeechHHHHHHHHhCCccCCCC
Q 002242 861 FKTLHWLVLSLETQKNIVGVIVAENERRV-SRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQ 924 (948)
Q Consensus 861 VktLa~l~qSldDqs~s~~yIIvedESs~-Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~~ 924 (948)
+..+.... .....+.+||++..... .......+++.++++|+.+||++||+.++++|++.
T Consensus 147 ~~~~~~~~----~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~ 207 (214)
T 1t15_A 147 VKELSSFT----LGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDT 207 (214)
T ss_dssp CCSGGGCC----CSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGG
T ss_pred ecCccccc----cCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCcc
Confidence 97654321 01112345555532211 11233456788999999999999999999999873
No 6
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.95 E-value=7.9e-28 Score=242.17 Aligned_cols=201 Identities=17% Similarity=0.217 Sum_probs=150.7
Q ss_pred cccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcc
Q 002242 704 VKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAF 783 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaW 783 (948)
.|-....|++|++|||...++.++.++|+.+||.|..+. ..++|||+++..||.||+.|++.|+|
T Consensus 9 ~~~~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~---------------~~~THLI~~~~~rT~K~l~A~~~g~~ 73 (219)
T 3sqd_A 9 MKLTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESA---------------QKCTHLIASKVTRTVKFLTAISVVKH 73 (219)
T ss_dssp CCCCGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSG---------------GGCSEEECSSCCCCHHHHHHTTTCSE
T ss_pred cccCCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC---------------CCceEEEECCCCCCHHHHHHHHcCCC
Confidence 455678899999999999877789999999999998662 24678999999999999999999999
Q ss_pred eechHHHHHHHhcCCCCCCCcccccCccccccccC-CCchhhhccCCCCCCCeEEEEecCC-chhhhHHHHHHhcCceEE
Q 002242 784 ILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTG-ITEPICRDNHKYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVF 861 (948)
Q Consensus 784 ILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~sr-I~~~vh~k~~~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVV 861 (948)
||+++||.+|+++|+++||++|++.+.....++.- +.....+...++||.|+.|||.++. ..++.+..||+++||+|+
T Consensus 74 IVs~~Wl~~c~~~~~~l~e~~y~l~d~~~e~~~~~~l~~~l~ra~~~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~ 153 (219)
T 3sqd_A 74 IVTPEWLEECFRCQKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVL 153 (219)
T ss_dssp EECHHHHHHHHHHTSCCCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEE
T ss_pred EecHHHHHHHHHcCCCCChHhccCCCchhhhhcCCChHHHhhhhccccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEE
Confidence 99999999999999999999999987543211110 0111111135789999999999843 346899999999999999
Q ss_pred eehhhh---hccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 862 KTLHWL---VLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 862 ktLa~l---~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
..+... ...-.+......+||.++++ .++...+.+.|+|++++|||++||+.|+| .|+
T Consensus 154 ~~~p~~~~~~~~~~~~~~~~~ivis~~~d---~~~~~~~~~~~~~v~s~E~il~~Il~q~l-d~~ 214 (219)
T 3sqd_A 154 SKQPSFRKLMEHKQNSSLSEIILISCEND---LHLCREYFARGIDVHNAEFVLTGVLTQTL-DYE 214 (219)
T ss_dssp SSCCCHHHHHHHHHCTTSCEEEEEECGGG---GGGGHHHHHTTCCCEETHHHHHHHHHTCC-CTT
T ss_pred CCCCchHHhhhhhcccCCCCEEEEecccH---HHHHHHHHHCCCcEEeHHHHHHHHHheee-cch
Confidence 755321 11111112233455555554 33444455679999999999999999988 554
No 7
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.95 E-value=9.7e-28 Score=237.83 Aligned_cols=179 Identities=15% Similarity=0.250 Sum_probs=138.7
Q ss_pred ceEEEEcCCCchhHHHHHHHHHHhCCE-eecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcceechHH
Q 002242 711 GIKFLLTGFSSQKEKEIEVLIQKYGGL-VLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKW 789 (948)
Q Consensus 711 GLvFLLTGfss~keKELtkLIe~LGG~-V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILKpsW 789 (948)
..+|++||++..++++|.++|+.+||. +..+.. ..++|||+++..||+|||.|+|.|+|||+++|
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~--------------~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~W 76 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVC--------------ETTTHVLSGKPLRTLNVLLGIARGCWVLSYDW 76 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCC--------------TTEEEEEESSCCCBHHHHHHHHTTCEEEETHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCC--------------CCCeEEEECCCCCCHHHHHHHHCCCcEEeHHH
Confidence 678999999998888899999999995 433321 24678998888999999999999999999999
Q ss_pred HHHHHhcCCCCCCCcccccCccccccccCCCchhh-hccCCCCCCCeEEEEe-c-CCchhhhHHHHHHhcCceEEeehhh
Q 002242 790 LTDSVAAGSTVSPAKYMILSSQADLKRTGITEPIC-RDNHKYIFGRVGIMLH-G-KPSFCTKFAVIVKHGGGQVFKTLHW 866 (948)
Q Consensus 790 LkDSiqAGk~LPEekYeI~S~ks~~k~srI~~~vh-~k~~~~LFdG~rfyL~-G-K~sFkDkfsrIIKAGGGQVVktLa~ 866 (948)
|.||+++|+++||++|++++........|+.+... ....++||.|+.||+. + ....++.|..||+++||+|+..+.
T Consensus 77 v~~~~~~g~~l~e~~y~~~~~~~~~~~~rl~r~~~~~~~~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~- 155 (199)
T 3u3z_A 77 VLWSLELGHWISEEPFELSHHFPAAPLCRSECHLSAGPYRGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR- 155 (199)
T ss_dssp HHHHHHHTSCCCSGGGBCTTTCTHHHHHHHHHHHCSSSCCCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-
T ss_pred HHHHhhCCCCCChhhccccCCccccccchhhhhhhcccccchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-
Confidence 99999999999999999987543221112211110 1245799999975554 4 345679999999999999996552
Q ss_pred hhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 867 LVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 867 l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
..++|| ++... +++.++|+|+.+||++||..+++||+.
T Consensus 156 ----------~~~iiI-~~~~~--------~~~~~~~~V~p~Wi~DsI~~~~llp~~ 193 (199)
T 3u3z_A 156 ----------QASIVI-GPYSG--------KKKATVKYLSEKWVLDSITQHKVCAPE 193 (199)
T ss_dssp ----------GCSEEE-SCCCS--------CCCTTCEEECHHHHHHHHHHTSCCCGG
T ss_pred ----------CCEEEE-eCCch--------hccCCCcEEChhHHHHHHHcCCcCChH
Confidence 124555 43221 356799999999999999999999987
No 8
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.94 E-value=4e-27 Score=233.29 Aligned_cols=192 Identities=14% Similarity=0.200 Sum_probs=137.7
Q ss_pred ccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCc
Q 002242 703 YVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNA 782 (948)
Q Consensus 703 ~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGa 782 (948)
..++....+++|++||+.+. +++++|+.+||.|..+.. .++|||+++..||.|||.|++.|+
T Consensus 4 ~~~~~~~~~~~v~~sG~~~~---~~~~~i~~lGg~~~~~~~---------------~~THlI~~~~~rt~K~l~a~~~g~ 65 (209)
T 2etx_A 4 TKLNQESTAPKVLFTGVVDA---RGERAVLALGGSLAGSAA---------------EASHLVTDRIRRTVKFLCALGRGI 65 (209)
T ss_dssp --------CCEEEECSSCCH---HHHHHHHHTTCEECSSTT---------------TCSEEECSSCCCSHHHHHHHHHTC
T ss_pred ccccccCCCcEEEEeCCCcH---HHHHHHHHCCCEEeCCCC---------------CceEEEECCCCCCHHHHHHHhcCC
Confidence 35677788999999999863 468999999999986522 367899999999999999999999
Q ss_pred ceechHHHHHHHhcCCCCCCCcccccCcccccccc-CCCchhhhccCCCCCCCeEEEEecCC-chhhhHHHHHHhcCceE
Q 002242 783 FILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRT-GITEPICRDNHKYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQV 860 (948)
Q Consensus 783 WILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~s-rI~~~vh~k~~~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQV 860 (948)
|||+++||.||+++|+++||++|++.+.....++. .+..........+||.|+.||+.+.. ...+.|.+||+++||+|
T Consensus 66 ~IV~~~Wl~~~~~~~~~l~e~~y~~~~~~~~~~~~~~l~~~~~~a~~~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v 145 (209)
T 2etx_A 66 PILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTY 145 (209)
T ss_dssp CEECTHHHHHHHHHTSCCCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEE
T ss_pred ccccHHHHHHHHHcCCCCChhhccccChhhhhhcCCCHHHHHhhhhhCCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEE
Confidence 99999999999999999999999997643321111 01111111123589999999999843 34589999999999999
Q ss_pred EeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 861 FKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 861 VktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
+..+.... ....+||.+++.. ..+ ..+.+.++|+|+.+||++||+.++| +++
T Consensus 146 ~~~~~~~~-------~~~~ivI~~~~d~--~~~-~~~~~~~i~vvs~eWi~~sI~~q~l-d~e 197 (209)
T 2etx_A 146 LPSMPRSY-------KPQRVVITCPQDF--PHC-SIPLRVGLPLLSPEFLLTGVLKQEA-KPE 197 (209)
T ss_dssp CSSCCCSC-------CTTEEEECCGGGG--GGC-HHHHHHTCCEECTHHHHHHHHHTCC-CGG
T ss_pred ECCCCCCC-------CCceEEEECcccH--HHH-HHHHHCCCeEEcHHHHHHHHHhccc-ChH
Confidence 96443211 1134555454332 112 2356678999999999999999987 554
No 9
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.94 E-value=2.7e-26 Score=233.97 Aligned_cols=200 Identities=18% Similarity=0.160 Sum_probs=146.0
Q ss_pred ccccceEEEEcCC---CchhHHHHHHHHHHhCCEeecCCC-----CCC-CcC------CccccCCCCCCcEEECCCCcch
Q 002242 707 LIFQGIKFLLTGF---SSQKEKEIEVLIQKYGGLVLLDIP-----PPN-SQG------KRCSRSHSQQLPVVICPKKLKT 771 (948)
Q Consensus 707 ~IF~GLvFLLTGf---ss~keKELtkLIe~LGG~V~sDip-----~pl-dk~------kR~aef~st~~~VVI~~k~~RT 771 (948)
.||.|+.|++||. ....+.+|+++|+.+||+|+.++- .+. ... +....+..++.++||+++..||
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 3899999999999 334567799999999999998731 111 100 0011122334578999999999
Q ss_pred HHHHHHhhcCcceechHHHHHHHhcCCCCCCCcccccCccccccccCC-------Cc---hh-hhccCCCCCCCeEEEEe
Q 002242 772 TKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGI-------TE---PI-CRDNHKYIFGRVGIMLH 840 (948)
Q Consensus 772 ~KfL~GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI-------~~---~v-h~k~~~~LFdG~rfyL~ 840 (948)
.||+.|+|.|+|||+++||.||+++|+++|+++|+|+++.+......+ .. .. .....+.||.|++||+.
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Lf~g~~i~~~ 160 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKILFI 160 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTTEEEECCCCCCCTTSCHHHHHHHCCCTTTTCEEEEC
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCCcchhccchhhccccCCChhhHHHHHHhhcCcCCCCcEEEEE
Confidence 999999999999999999999999999999999999977654211110 00 00 12356799999999998
Q ss_pred cCC---c-----------hhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 841 GKP---S-----------FCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 841 GK~---s-----------FkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
+.. . +.+.|..|++++||++ ..+..+ ++ ...++|+.+ +.. .+++.++|+|+
T Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~-~~v~~~----~~--~~~d~v~~~-~~~-------~~~~~~~~iV~ 225 (241)
T 2vxb_A 161 IPEAKSWQKKIENTEQGQKALAHVYHALALGADV-EIRPNV----AH--LECDLILTM-DGN-------IVDETNCPVVD 225 (241)
T ss_dssp CCC------------CHHHHHHHHHHHHHTTCEE-ECCSCC----SS--CCCSEEECS-SSC-------CCSSCSSCEEC
T ss_pred eCCCcccccccccccccchHHHHHHHHHHcCCce-eccccc----cc--CCccEEEEC-Ccc-------ccccCCCCEec
Confidence 632 1 2378999999999999 433222 11 345666654 331 26678999999
Q ss_pred hHHHHHHHHhCCccC
Q 002242 907 ASWIIKSLHIGMLLP 921 (948)
Q Consensus 907 sEWIIESImsgkLLP 921 (948)
.+||+|||++|++|+
T Consensus 226 ~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 226 PEWIVECLISQSDIS 240 (241)
T ss_dssp HHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHhceecC
Confidence 999999999999986
No 10
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.92 E-value=1.7e-25 Score=226.37 Aligned_cols=193 Identities=16% Similarity=0.223 Sum_probs=135.7
Q ss_pred ccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcceechH
Q 002242 709 FQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAK 788 (948)
Q Consensus 709 F~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILKps 788 (948)
=.++.+++||+...+ +.++|+.+||.|..++. .++|||+++..||.|||.|+|.|+|||+++
T Consensus 6 ~~~~~v~fSG~~~~~---~~~~i~~lGg~v~~~~~---------------~~THlV~~~~~RT~K~l~Aia~g~~IVs~~ 67 (220)
T 3l41_A 6 SKRVYITFTGYDKKP---SIDNLKKLDMSITSNPS---------------KCTHLIAPRILRTSKFLCSIPYGPCVVTMD 67 (220)
T ss_dssp -CCEEEEECSCSSCC---CCGGGGGGTEEECSCTT---------------TCSEEECSSCCCBHHHHHHGGGCCEEECHH
T ss_pred cceEEEEEeccCCCC---CcchHhhcceeeccCch---------------hhhhhhhhhHhhhcceeecCCCCCeEEEhH
Confidence 357899999998753 59999999999986622 467899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCcccccCcccccccc-CCCchhh--hccCCCCCCCeEEEEecCC---chhhhHHHHHHhcCceEEe
Q 002242 789 WLTDSVAAGSTVSPAKYMILSSQADLKRT-GITEPIC--RDNHKYIFGRVGIMLHGKP---SFCTKFAVIVKHGGGQVFK 862 (948)
Q Consensus 789 WLkDSiqAGk~LPEekYeI~S~ks~~k~s-rI~~~vh--~k~~~~LFdG~rfyL~GK~---sFkDkfsrIIKAGGGQVVk 862 (948)
||.+|+++|+++||++|++.+.....+.. ++..... +...++||+|++|||.++. +..+.|..||+++||+|+.
T Consensus 68 Wl~~~~~~~~~l~e~~y~l~d~~~e~~~~~~l~~~~~rar~~~~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~ 147 (220)
T 3l41_A 68 WINSCLKTHEIVDEEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCST 147 (220)
T ss_dssp HHHHHHHHTSCCCSGGGBCCCHHHHHHHTSCHHHHHHHHHHHCSCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHhhhhhhhccccCccccCCcHHHhhccccHHHHHHHHHhcCchhhhheeEEEeccccCCCCCceEEEEEecCCcEech
Confidence 99999999999999999998653321111 1111111 1235799999999999854 4568999999999999997
Q ss_pred ehhhhhccccccccceeEEEecCCcchh-hhhHHHHhhc-CceeechHHHHHHHHhCCc
Q 002242 863 TLHWLVLSLETQKNIVGVIVAENERRVS-RHLRHCAFEK-KIAMVPASWIIKSLHIGML 919 (948)
Q Consensus 863 tLa~l~qSldDqs~s~~yIIvedESs~S-r~Lk~~Arr~-gIP~VpsEWIIESImsgkL 919 (948)
...+...+-.......-|||.+++.... ...+..+..+ ++.+++.|||+++||.|+|
T Consensus 148 ~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l 206 (220)
T 3l41_A 148 LNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEI 206 (220)
T ss_dssp ECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEEEechhHHHHHHHHHHc
Confidence 2222111000000011356655444210 1112223222 5569999999999999886
No 11
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.84 E-value=2.7e-20 Score=195.20 Aligned_cols=177 Identities=18% Similarity=0.276 Sum_probs=142.0
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
+.+|.|++|++||+....+.+|.++|+.+||+|..++. ..++|||+.+. +|.||..|+..|+|||
T Consensus 103 ~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t--------------~~tTHLI~~~~-~t~Ky~~A~~~gi~IV 167 (298)
T 3olc_X 103 NMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLN--------------VSVTHLIAGEV-GSKKYLVAANLKKPIL 167 (298)
T ss_dssp CCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCC--------------TTCCEEEESSS-CSHHHHHHHHTTCCEE
T ss_pred ccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcC--------------CCeeEEEEeCC-CChHHHHHHHCCCeEe
Confidence 56899999999999988788899999999999987633 24677888754 7999999999999999
Q ss_pred chHHHHHHHhcCCCCCCCcccccCccccccccCCCchhhhccCCCCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeeh
Q 002242 786 KAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTL 864 (948)
Q Consensus 786 KpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktL 864 (948)
+++||.+|.+.|+.+++..|.-.. . .+...++|.|+.|++.|.. ..++.+..+|++.||++...+
T Consensus 168 ~~~Wl~~c~~~~~~~~~~~~~~~~-----------~---~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~l 233 (298)
T 3olc_X 168 LPSWIKTLWEKSQEKKITRYTDIN-----------M---EDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQL 233 (298)
T ss_dssp CHHHHHHHHHHHHTTCCSSGGGSC-----------G---GGGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSC
T ss_pred eHHHHHHHHHcCCcCCcccccccc-----------c---ccccccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEecee
Confidence 999999999999998776552110 0 1134579999999999943 456799999999999998544
Q ss_pred hhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 865 HWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 865 a~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
. + ..+++||+.+... + ....|++.|||+|+.+||.+||..|++||..
T Consensus 234 s-------~--~~~THLI~~~~~g-~--K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~ 280 (298)
T 3olc_X 234 K-------M--NECTHLIVQEPKG-Q--KYECAKRWNVHCVTTQWFFDSIEKGFCQDES 280 (298)
T ss_dssp C-------T--TTCCEEECSSSCS-H--HHHHHHHTTCEEECHHHHHHHHHHTSCCCGG
T ss_pred c-------C--CCceEEEEeCCCc-h--HHHHHHHCCCeEEeHHHHHHHHHCCCCCCch
Confidence 2 1 2467888776542 2 2346788899999999999999999999954
No 12
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.82 E-value=3.4e-19 Score=183.41 Aligned_cols=194 Identities=18% Similarity=0.239 Sum_probs=136.1
Q ss_pred cccccccceEEEE-cCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcC-
Q 002242 704 VKRLIFQGIKFLL-TGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVN- 781 (948)
Q Consensus 704 ~Ks~IF~GLvFLL-TGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsG- 781 (948)
.++.||.|+.|++ +|..+..+.+|+++|..+||+|..+.. ..+++||+++ +|.|+..++..|
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~--------------~~t~~iIa~~--~~~k~~~~~~~g~ 69 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPG--------------PDTYCVIAGS--ENIRVKNIILSNK 69 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCC--------------TTEEEEECSS--CCHHHHHHHHSCS
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCC--------------CCEEEEEeCC--CCHHHHHHHhcCC
Confidence 3588999999987 787777788899999999999985421 2467889885 569999999998
Q ss_pred cceechHHHHHHHhcCCCCCCCcccccCccc-------------ccccc-------------CCC-----ch--------
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMILSSQA-------------DLKRT-------------GIT-----EP-------- 822 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI~S~ks-------------~~k~s-------------rI~-----~~-------- 822 (948)
++||+|+||.||+++|++||.++|.+..... +.-+. ++. .+
T Consensus 70 ~~IV~p~Wv~Dci~~~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~ 149 (263)
T 3ii6_X 70 HDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIA 149 (263)
T ss_dssp CCEECHHHHHHHHHHTSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHHHHHHH
T ss_pred CCEeehHHHHHHHhcCCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhhHHHHH
Confidence 9999999999999999999999884321111 00000 000 00
Q ss_pred h----h-h-ccCCCCCCCeEEEEecC-----------CchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecC
Q 002242 823 I----C-R-DNHKYIFGRVGIMLHGK-----------PSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAEN 885 (948)
Q Consensus 823 v----h-~-k~~~~LFdG~rfyL~GK-----------~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIved 885 (948)
. . . ..+..+|+||.|||.+- ....+.+..+|+.+||+|+..+ ...++|||+.+
T Consensus 150 ~l~~~~~~~~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l----------~~~vTHVVv~~ 219 (263)
T 3ii6_X 150 DLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCL----------AEGVSHVIIGE 219 (263)
T ss_dssp HHHHHHTCTTCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSC----------CTTCCEEEECS
T ss_pred HHHHhhcccCCcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCC----------CCCceEEEECC
Confidence 0 0 0 13567999999999751 1234567899999999999543 22467888875
Q ss_pred CcchhhhhHHHHh--hcCceeechHHHHHHHHhCCccCCC
Q 002242 886 ERRVSRHLRHCAF--EKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 886 ESs~Sr~Lk~~Ar--r~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
.......++...+ ..++.+|..+||.+||..|++||-.
T Consensus 220 ~~~r~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~~l~E~ 259 (263)
T 3ii6_X 220 DHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEEN 259 (263)
T ss_dssp CCTTHHHHHHHHHTCSSCCEEEETHHHHHHHHTTSCCCGG
T ss_pred CCccHHHHHHHHhhcCCCCEEeChHHHHHHHHcCCcCCHh
Confidence 3321112332222 2479999999999999999999843
No 13
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.5e-19 Score=183.38 Aligned_cols=198 Identities=16% Similarity=0.184 Sum_probs=118.1
Q ss_pred ccccccceEEEE-cCCCc------hhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHH
Q 002242 705 KRLIFQGIKFLL-TGFSS------QKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYG 777 (948)
Q Consensus 705 Ks~IF~GLvFLL-TGfss------~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~G 777 (948)
++.||.|+.|++ +|..+ ..+.+|+.+|+.+||++... +.+. ++. ...+|||++. .|.|+-.+
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~-~~~~-------t~~-~~~~~iI~~~--~t~k~~~~ 70 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYN-VILK-------RHS-IGDVRLISCK--TTTECKAL 70 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCC-SSCC-------CCC-SSCCEEEECS--CCGGGGGG
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeec-CCCC-------ccC-ccceEEEecC--CcHHHHHH
Confidence 468999999966 66422 24557999999999998753 2111 111 1247888875 68888888
Q ss_pred hhcCcceechHHHHHHHhcCCCCCCCcccccCcccc------ccccCCCc------------------------------
Q 002242 778 CAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQAD------LKRTGITE------------------------------ 821 (948)
Q Consensus 778 IAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~------~k~srI~~------------------------------ 821 (948)
...|.+||+|+||.||+++|++||++.|.+-..... +...+.+-
T Consensus 71 ~~~~~~vV~p~Wv~dci~~~~llp~~~y~~~~~~~~~~~~~~~~~d~~gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 150 (264)
T 1z56_C 71 IDRGYDILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEID 150 (264)
T ss_dssp TTTTCCCBCSSTTHHHHSSCSCCCCCSCBSCCCGGGTHHHHGGGBCSSSCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSC
T ss_pred HhCCCCEEechHHHHHhhcCCCCCCChHHhhcCCHHHHHHHHHhccccCCccccCCCHHHHHHHHHhcccccchhhhhhh
Confidence 888999999999999999999999999855321110 00000000
Q ss_pred hhhhccCCCCCCCeEEEEecC--CchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcc--h--hhhhHH
Q 002242 822 PICRDNHKYIFGRVGIMLHGK--PSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERR--V--SRHLRH 895 (948)
Q Consensus 822 ~vh~k~~~~LFdG~rfyL~GK--~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs--~--Sr~Lk~ 895 (948)
......+..||.||.|||.|. ....+.+..+|+.+||+|+..+ ..++.+||...... . -..++.
T Consensus 151 ~~~~~~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l----------~~~t~hVV~~~~~~~~~~~~~~~~~ 220 (264)
T 1z56_C 151 SEVRRFPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQ----------SLCNLIIIPYTDPILRKDCMNEVHE 220 (264)
T ss_dssp CSCCCCCCC--------------------CHHHHHHHTTSCCCCS----------SSCSEEECCCSSTTTHHHHSSHHHH
T ss_pred cccccCchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEeccc----------CCCEEEEEeCCCccchHHHHHHHHH
Confidence 000124578999999999984 3444678899999999998433 24566666543221 0 111222
Q ss_pred -HHhh-------cCc-eeechHHHHHHHHhCCccCCC
Q 002242 896 -CAFE-------KKI-AMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 896 -~Arr-------~gI-P~VpsEWIIESImsgkLLPf~ 923 (948)
.+++ .++ .+|..+||.+||..|+|||-.
T Consensus 221 ~~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~ll~e~ 257 (264)
T 1z56_C 221 KIKEQIKASDTIPKIARVVAPEWVDHSINENCQVPEE 257 (264)
T ss_dssp TTTTTTTSSSSCCCCCEEECTHHHHHHHTTSCCCSSC
T ss_pred HHHhhcccccccCCCCEEecHHHHHHHHHcCCcCCHH
Confidence 2223 244 999999999999999999865
No 14
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.47 E-value=1.6e-13 Score=123.50 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=77.8
Q ss_pred cccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC--cchHHHHHHhhcC
Q 002242 704 VKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK--LKTTKFLYGCAVN 781 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~--~RT~KfL~GIAsG 781 (948)
..+.+|.|++|.+||+....+.+|.++|+.+||+|..++. ..++|||+.+. .++.||..|...|
T Consensus 11 ~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s--------------~~~THlI~~~~~~~~~~K~~~A~~~g 76 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFD--------------ETVTHFIYQGRPNDTNREYKSVKERG 76 (107)
T ss_dssp ---CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCC--------------TTCCEEECCCCTTCCCHHHHHHHHTT
T ss_pred cccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEecccc--------------CCceEEEecCCCCCCCHHHHHHHHCC
Confidence 4578999999999999987788899999999999986633 24678888542 4789999999999
Q ss_pred cceechHHHHHHHhcCCCCCCCccccc
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
+|||+++||.||+++|+++||.+|.+.
T Consensus 77 i~IV~~~Wl~~c~~~~~~l~e~~Y~~~ 103 (107)
T 3l3e_A 77 VHIVSEHWLLDCAQECKHLPESLYPHT 103 (107)
T ss_dssp CEEECHHHHHHHHHHTSCCCGGGCCTT
T ss_pred CeEecHHHHHHHHHhCCCCchhhCCCC
Confidence 999999999999999999999999864
No 15
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.44 E-value=2.2e-13 Score=119.68 Aligned_cols=89 Identities=18% Similarity=0.363 Sum_probs=72.8
Q ss_pred cccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcc
Q 002242 704 VKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAF 783 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaW 783 (948)
..+.||.|+.|.++|+....+.+|+++|+.+||++..+.. ...++|||+++. .+.|+..+. |++
T Consensus 8 ~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~-------------~~~~THlI~~~~-~~~k~~~~~--~~~ 71 (97)
T 2ebw_A 8 TSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYS-------------RSKTTHIIATNL-PNAKIKELK--GEK 71 (97)
T ss_dssp CCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCC-------------SSSCCEEECSCC-CTTHHHHTS--SSC
T ss_pred CCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecC-------------CCCCEEEEecCC-ChHHHHHhc--CCC
Confidence 4578999999999999887777899999999999875421 124678888865 245665443 999
Q ss_pred eechHHHHHHHhcCCCCCCCccccc
Q 002242 784 ILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 784 ILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
||+|+||.||+++|+.||++.|.+-
T Consensus 72 iV~p~Wl~dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 72 VIRPEWIVESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp CBCTHHHHHHHHHTSCCCSGGGBSC
T ss_pred EeChHHHHHHHHcCCccCchHcEec
Confidence 9999999999999999999999863
No 16
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=128.30 Aligned_cols=95 Identities=14% Similarity=0.268 Sum_probs=78.7
Q ss_pred ccccccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHh
Q 002242 699 TRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGC 778 (948)
Q Consensus 699 ~~~~~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GI 778 (948)
+-+..++.++|.|+++.+|||++.++++|.++|+.+||.++.+.. ..++|||+++.. +.||..|.
T Consensus 12 ~~~~~~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~--------------~~cTHLV~~~~~-~~K~~~A~ 76 (112)
T 3l46_A 12 ENLYFQGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGD--------------ERCTHLVVEENI-VKDLPFEP 76 (112)
T ss_dssp ------CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTC--------------TTCSEEEECTTT-BSSCSSCC
T ss_pred ccccccCCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccC--------------CCceEEEecCCc-hhhHHHHH
Confidence 334568999999999999999998888999999999999986522 246778877653 34888999
Q ss_pred hcCcceechHHHHHHHhcCCCCCCCccccc
Q 002242 779 AVNAFILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 779 AsGaWILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
..|++||+++||.||++.|.++||..|.+.
T Consensus 77 ~~~i~IVs~eWl~dsi~~g~~ldE~~Y~~~ 106 (112)
T 3l46_A 77 SKKLYVVKQEWFWGSIQMDARAGETMYLYE 106 (112)
T ss_dssp CSSCEEEEHHHHHHHHHHTSCCCGGGSBCC
T ss_pred HCCeeEecHHHHHHHHHcCCccChhhceec
Confidence 999999999999999999999999999885
No 17
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.6e-13 Score=124.87 Aligned_cols=93 Identities=18% Similarity=0.334 Sum_probs=80.8
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
..+|.|++|.+||+....+.+|.++|+.+||+|..+.. ..++||||.. .++.||..|...|+|||
T Consensus 20 ~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s--------------~~~ThLI~~~-~~~~K~~~A~~~gi~IV 84 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWT--------------RDSTHLICAF-ANTPKYSQVLGLGGRIV 84 (129)
T ss_dssp TTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCC--------------TTCCEEEESS-SSCHHHHHHHHHTCEEE
T ss_pred cccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcC--------------CCCeEEEecC-CCChHHHHHHHCCCcEe
Confidence 56899999999999977778899999999999987633 2367788874 46899999999999999
Q ss_pred chHHHHHHHhcCCCCCCCcccccCcccc
Q 002242 786 KAKWLTDSVAAGSTVSPAKYMILSSQAD 813 (948)
Q Consensus 786 KpsWLkDSiqAGk~LPEekYeI~S~ks~ 813 (948)
+++||.||+++|+++|+..|++....+.
T Consensus 85 ~~~Wl~d~~~~~~~l~e~~Y~l~~~~~~ 112 (129)
T 2d8m_A 85 RKEWVLDCHRMRRRLPSQRYLMAGPGSS 112 (129)
T ss_dssp ETHHHHHHHHTTSCCCGGGGBCSSSSCC
T ss_pred cHHHHHHHHHhCCcCChHhcccCCCCcC
Confidence 9999999999999999999999875444
No 18
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=7e-13 Score=114.23 Aligned_cols=89 Identities=16% Similarity=0.292 Sum_probs=70.3
Q ss_pred cccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcc
Q 002242 704 VKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAF 783 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaW 783 (948)
.++.+|.|++|.+||+....+.+|+++|+.+||+|...... ...++|||+.+.. ..|.. -+.|++
T Consensus 3 ~~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~------------~~~~THlI~~~~~-~~K~~--~~~~~~ 67 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSS------------KKTVTHIVASNLP-LKKRI--EFANYK 67 (92)
T ss_dssp ---CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCC------------TTTCCEEECSCCC-HHHHH--HTTTSC
T ss_pred ccccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecC------------CCceEEEEecCCC-HHHHH--HcCCCC
Confidence 46789999999999987766778999999999999866320 0246788887653 24532 347999
Q ss_pred eechHHHHHHHhcCCCCCCCcccc
Q 002242 784 ILKAKWLTDSVAAGSTVSPAKYMI 807 (948)
Q Consensus 784 ILKpsWLkDSiqAGk~LPEekYeI 807 (948)
||+|+||.||+++|+.||++.|.+
T Consensus 68 iV~~~Wi~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 68 VVSPDWIVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp EECTHHHHHHHHHTSCCCGGGGBC
T ss_pred EEcccHHHHHHHcCCcCChhhccc
Confidence 999999999999999999999986
No 19
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=5.9e-13 Score=121.29 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=80.5
Q ss_pred cccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcC
Q 002242 702 KYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVN 781 (948)
Q Consensus 702 ~~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsG 781 (948)
..++..+|.|+++.+|||+..++.+|.++|+.+||.+..+. ...++|||+++. .+.||..|...|
T Consensus 6 ~~~~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~--------------~~~~THLV~~~~-~~~K~~~a~~~~ 70 (109)
T 2cou_A 6 SGFKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVG--------------DERCTHLIVEEN-TVKDLPFEPSKK 70 (109)
T ss_dssp CSSCCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTT--------------CTTCSEEEECTT-TCSSCSSCCCTT
T ss_pred ccccCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEeccc--------------CCCccEEEEeCC-ccHHHHHHHHCC
Confidence 34789999999999999999888889999999999998542 124677887754 467899999999
Q ss_pred cceechHHHHHHHhcCCCCCCCcccccC
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMILS 809 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI~S 809 (948)
++||+++||.||++.|+++||..|.+..
T Consensus 71 i~IV~~~Wl~dsi~~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 71 LFVVKQEWFWGSIQMDARAGETMYLYEK 98 (109)
T ss_dssp SEEECHHHHHHHHHTTSCCCGGGTBCCC
T ss_pred CeEecHHHHHHHHHcCCcCChhccCCCC
Confidence 9999999999999999999999998864
No 20
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.31 E-value=1e-11 Score=116.12 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=81.8
Q ss_pred ccCCccccchhhhHhhhcccccccccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCC
Q 002242 679 SKNSNACRDSQLQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQ 758 (948)
Q Consensus 679 ~~~s~~~~~s~~~~~~~~~~~~~~~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st 758 (948)
+|.+..+..-+..|+.- ...+..+|.|++|.++|+....+..|..+|+.+||.|..+.. .
T Consensus 17 ~~~~~~~~~~~~~d~~~------~~~~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~--------------~ 76 (132)
T 1wf6_A 17 SKLEPTLENLENLDVSA------FQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLN--------------E 76 (132)
T ss_dssp SCSCSSGGGSTTCCGGG------CCCCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCC--------------S
T ss_pred CCCCCCcchhhhcCccc------ccccccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCC--------------C
Confidence 44444444444444433 235678999999999999887777799999999999986532 2
Q ss_pred CCcEEECCCCcchHHHH-HHhhcCcceechHHHHHHHhcCCCCCCCcccccCc
Q 002242 759 QLPVVICPKKLKTTKFL-YGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSS 810 (948)
Q Consensus 759 ~~~VVI~~k~~RT~KfL-~GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ 810 (948)
.++|||++....++|-. .....+++||+++||.||+++|+.|||+.|.++..
T Consensus 77 ~vTHvI~~~~~~~~~~~~~~~~~~~~iV~~~Wv~dsi~~~~ll~e~~Y~~~~~ 129 (132)
T 1wf6_A 77 DVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLECFSKGYMLSEEPYIHSGP 129 (132)
T ss_dssp SCCEEEESSCCSHHHHHHHHSCCCCCEEEHHHHHHHHHHSSCCCSGGGBCCCS
T ss_pred CCeEEEECCchHHHHHHHHhhCCCCeEechHHHHHHHHcCCcCCHhhccCCCC
Confidence 35667776554454433 33346899999999999999999999999987643
No 21
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.20 E-value=4.1e-11 Score=125.97 Aligned_cols=96 Identities=22% Similarity=0.303 Sum_probs=82.8
Q ss_pred cccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcC
Q 002242 702 KYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVN 781 (948)
Q Consensus 702 ~~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsG 781 (948)
..++..+|.|++|.+||+....+.+|.++|+.+||+++.+.. ...++|||+.+. .+.||..|...|
T Consensus 193 ~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls-------------~~~~THLI~~~~-~g~K~~~A~~~g 258 (298)
T 3olc_X 193 EDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLK-------------MNECTHLIVQEP-KGQKYECAKRWN 258 (298)
T ss_dssp GGGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCC-------------TTTCCEEECSSS-CSHHHHHHHHTT
T ss_pred ccccccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceec-------------CCCceEEEEeCC-CchHHHHHHHCC
Confidence 457889999999999999998888899999999999986632 124678888866 478999999999
Q ss_pred cceechHHHHHHHhcCCCCCCCcccccCcc
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMILSSQ 811 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI~S~k 811 (948)
+|||+++||.||++.|+.+||+.|.+..+.
T Consensus 259 i~IV~~~Wl~dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 259 VHCVTTQWFFDSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp CEEECHHHHHHHHHHTSCCCGGGSBSCC--
T ss_pred CeEEeHHHHHHHHHCCCCCCchhcCCCCCc
Confidence 999999999999999999999999987643
No 22
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=99.19 E-value=2.3e-10 Score=119.41 Aligned_cols=191 Identities=17% Similarity=0.230 Sum_probs=133.6
Q ss_pred cceEEEEcCCC-chhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCc--ceec
Q 002242 710 QGIKFLLTGFS-SQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNA--FILK 786 (948)
Q Consensus 710 ~GLvFLLTGfs-s~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGa--WILK 786 (948)
..+..++||.. +..++.=.+.-+.+|=+|..++. ...++.+||+|+..||.|||.|+|.|- ++|+
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~------------~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~ 88 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIK------------ETDKLNCIFAPKILRTEKFLKSLSFEPLKFALK 88 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCC------------GGGCCCEEECSSCCCBHHHHHHTTSTTCCEEEC
T ss_pred eeEEEEecCCcccccCHHHHHHHHHcCeEEEecCc------------ccCCCCEEEcCchhhHHHHHHHhccCccceEeC
Confidence 68999999998 53333334567889999987752 113577899999999999999999987 4999
Q ss_pred hHHHHHHHhc---CC------CCCCCcccccCccccccccCCCchhhhccCCCCCCCe---EEEEecC--CchhhhHHHH
Q 002242 787 AKWLTDSVAA---GS------TVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRV---GIMLHGK--PSFCTKFAVI 852 (948)
Q Consensus 787 psWLkDSiqA---Gk------~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LFdG~---rfyL~GK--~sFkDkfsrI 852 (948)
|+||.||++. |+ .++.++|.|++..... + ...++.++||.|+ .|+|..+ ..+ +.+..|
T Consensus 89 p~FI~~~Lk~ih~~~~~~~~~~l~~~dY~L~d~~~E~----l---~r~~~~gkLf~~~~I~ciNls~dI~GG~-e~issI 160 (256)
T 3t7k_A 89 PEFIIDLLKQIHSKKDKLSQININLFDYEINGINESI----I---SKTKLPTKVFERANIRCINLVNDIPGGV-DTIGSV 160 (256)
T ss_dssp THHHHHHHHHHC-------CCCCCSSTTBCTTCCHHH----H---HHTTSSSCHHHHTTCCEEEEETTCTTCH-HHHHHH
T ss_pred HHHHHHHHHHhhcCCcccccccCChhhccCCCcchhH----H---hhhccccccccCCcceeeeeccCCCCCH-HHHHHH
Confidence 9999999999 88 8999999998643321 1 1134678999999 6777864 355 889999
Q ss_pred HHhcCceEEeehhh---hhccc-------cccccceeEEEecCCcchhhhhHHHHh----hcCceeechHHHHHHHHhCC
Q 002242 853 VKHGGGQVFKTLHW---LVLSL-------ETQKNIVGVIVAENERRVSRHLRHCAF----EKKIAMVPASWIIKSLHIGM 918 (948)
Q Consensus 853 IKAGGGQVVktLa~---l~qSl-------dDqs~s~~yIIvedESs~Sr~Lk~~Ar----r~gIP~VpsEWIIESImsgk 918 (948)
|++-||.=++.|.. ....+ .+.....+||++...++.....+...+ ...+-+|-=+|.+.||+..+
T Consensus 161 leahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~q~k~Fkk~~~~~~~n~~~lvveWdWCVksIF~le 240 (256)
T 3t7k_A 161 LKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKASQVKKFTKLINDRDKNETILIVEWNWCVESIFHLN 240 (256)
T ss_dssp HHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHHHHHHHHHHHHHHSTTSCEEEECHHHHHHHHHTTS
T ss_pred HHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHHHHHHHHHHhhcccccceEEEEEcHHHHHHHhhee
Confidence 99999976654432 11000 001123558888877754322222221 13688999999999999988
Q ss_pred cc
Q 002242 919 LL 920 (948)
Q Consensus 919 LL 920 (948)
+-
T Consensus 241 vd 242 (256)
T 3t7k_A 241 VD 242 (256)
T ss_dssp CC
T ss_pred ec
Confidence 63
No 23
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=98.91 E-value=3.1e-09 Score=97.79 Aligned_cols=88 Identities=13% Similarity=0.259 Sum_probs=70.6
Q ss_pred cccccceEEEEcCCC-chhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHh--hcCc
Q 002242 706 RLIFQGIKFLLTGFS-SQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGC--AVNA 782 (948)
Q Consensus 706 s~IF~GLvFLLTGfs-s~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GI--AsGa 782 (948)
..+|.|++|+|+|.. +..++.|+.+|..+||.|.... ...++|||++.. .+-|+-.+. -.++
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~--------------~~~vTHvIt~~~-~d~~~~~a~~~~p~~ 69 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYM--------------NERVQFVITAQE-WDPNFEEALMENPSL 69 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSC--------------CTTCCEEEESSC-CCHHHHHHHTTCTTC
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEccc--------------CCCceEEEeCCC-CChhHHHHhhhCCCC
Confidence 469999999999998 4667779999999999987541 124678888765 334444443 4579
Q ss_pred ceechHHHHHHHhcCCCCCCCccccc
Q 002242 783 FILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 783 WILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
.+|+|+||.+|+.+++.+|+.+|++.
T Consensus 70 ~~V~P~WI~~Ci~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 70 AFVRPRWIYSCNEKQKLLPHQLYGVV 95 (104)
T ss_dssp EEECHHHHHHHHHHTSCCCGGGGBCC
T ss_pred eEEccHHHHHHHhcCccCCcccceec
Confidence 99999999999999999999999874
No 24
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=98.87 E-value=6.1e-09 Score=89.63 Aligned_cols=83 Identities=24% Similarity=0.298 Sum_probs=63.0
Q ss_pred CCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 828 HKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 828 ~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
...+|.|+.|||.| ...-++++.++|+..||++...+. ....++|||+.+.... + ..+..++++|.
T Consensus 4 ~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~--------~~~~~THlI~~~~~~~----K-~~~~~~~~iV~ 70 (92)
T 4id3_A 4 SSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLS--------SKKTVTHIVASNLPLK----K-RIEFANYKVVS 70 (92)
T ss_dssp --CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCC--------CTTTCCEEECSCCCHH----H-HHHTTTSCEEC
T ss_pred cccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEec--------CCCceEEEEecCCCHH----H-HHHcCCCCEEc
Confidence 45799999999999 445578999999999999995432 1134678887765421 1 22336899999
Q ss_pred hHHHHHHHHhCCccCCC
Q 002242 907 ASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 907 sEWIIESImsgkLLPf~ 923 (948)
.+||.+||..|++||..
T Consensus 71 ~~Wi~dci~~~~~l~e~ 87 (92)
T 4id3_A 71 PDWIVDSVKEARLLPWQ 87 (92)
T ss_dssp THHHHHHHHHTSCCCGG
T ss_pred ccHHHHHHHcCCcCChh
Confidence 99999999999999965
No 25
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.86 E-value=1.8e-09 Score=107.32 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=69.5
Q ss_pred cccccccce-EEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCc
Q 002242 704 VKRLIFQGI-KFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNA 782 (948)
Q Consensus 704 ~Ks~IF~GL-vFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGa 782 (948)
++..+|.|+ .|++|++....+.+|+.||+.+||+|..+.. ..+|+|++... +.-.|+
T Consensus 115 ~~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~---------------~~~iiI~~~~~-------~~~~~~ 172 (199)
T 3u3z_A 115 YRGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR---------------QASIVIGPYSG-------KKKATV 172 (199)
T ss_dssp CCCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG---------------GCSEEESCCCS-------CCCTTC
T ss_pred ccchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC---------------CCEEEEeCCch-------hccCCC
Confidence 567999999 6999998876678899999999999987622 24578877432 235799
Q ss_pred ceechHHHHHHHhcCCCCCCCccccc
Q 002242 783 FILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 783 WILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
+||+|+||.||+.+++.+|+++|+++
T Consensus 173 ~~V~p~Wi~DsI~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 173 KYLSEKWVLDSITQHKVCAPENYLLS 198 (199)
T ss_dssp EEECHHHHHHHHHHTSCCCGGGGBCC
T ss_pred cEEChhHHHHHHHcCCcCChHhccCC
Confidence 99999999999999999999999875
No 26
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.85 E-value=2.1e-09 Score=119.56 Aligned_cols=91 Identities=22% Similarity=0.431 Sum_probs=77.9
Q ss_pred cccccccccceEEEEcCCCch----hHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHH
Q 002242 702 KYVKRLIFQGIKFLLTGFSSQ----KEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYG 777 (948)
Q Consensus 702 ~~~Ks~IF~GLvFLLTGfss~----keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~G 777 (948)
...|+.+|.|++|++||+... .+.+|..+|+.+||+|..++. ..++||||.+ .+|.||..|
T Consensus 346 ~~~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs--------------~~vTHLVa~~-~~t~K~~~A 410 (442)
T 3ef1_A 346 PKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFS--------------VPPTHLIAAK-IRTEKVKKA 410 (442)
T ss_dssp HHHHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSS--------------SCCSEEEECS-CCCHHHHHH
T ss_pred HHHhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCC--------------CCceEEEeCC-CCCHHHHHH
Confidence 346788999999999998753 346799999999999987743 2467888875 478999999
Q ss_pred hhc-CcceechHHHHHHHhcCCCCCCCcccc
Q 002242 778 CAV-NAFILKAKWLTDSVAAGSTVSPAKYMI 807 (948)
Q Consensus 778 IAs-GaWILKpsWLkDSiqAGk~LPEekYeI 807 (948)
... |+|||+++||.+|++.++.+||..|++
T Consensus 411 ~~~g~IkIVs~~WL~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 411 VSMGNIKVVKLNWLTESLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred HhcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence 998 499999999999999999999999986
No 27
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.85 E-value=3.7e-09 Score=114.97 Aligned_cols=89 Identities=22% Similarity=0.451 Sum_probs=76.4
Q ss_pred cccccccceEEEEcCCCch----hHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhh
Q 002242 704 VKRLIFQGIKFLLTGFSSQ----KEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCA 779 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~----keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIA 779 (948)
.|..+|.|++|++||+... ++.++..+|+.+||+|..+.. ..++||||.+ ..|.|+..|..
T Consensus 278 lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs--------------~~vTHLVa~~-~~t~K~~~A~~ 342 (372)
T 3ef0_A 278 MKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFS--------------VPPTHLIAAK-IRTEKVKKAVS 342 (372)
T ss_dssp HHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSS--------------SCCSEEEECS-CCCHHHHHHHH
T ss_pred HHhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCC--------------CCceEEEEcC-CCchHHHHHHh
Confidence 5678999999999999742 345799999999999997743 2457788875 46899999999
Q ss_pred c-CcceechHHHHHHHhcCCCCCCCcccc
Q 002242 780 V-NAFILKAKWLTDSVAAGSTVSPAKYMI 807 (948)
Q Consensus 780 s-GaWILKpsWLkDSiqAGk~LPEekYeI 807 (948)
. |++||+++||.+|+++++.+||+.|++
T Consensus 343 ~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 343 MGNIKVVKLNWLTESLSQWKRLPESDYLL 371 (372)
T ss_dssp SSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred cCCCEEEcHHHHHHHHHhCCcCChhhcee
Confidence 8 899999999999999999999999986
No 28
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.73 E-value=2.5e-08 Score=91.68 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=69.6
Q ss_pred cccccceEEEEcCCCc----hhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcC
Q 002242 706 RLIFQGIKFLLTGFSS----QKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVN 781 (948)
Q Consensus 706 s~IF~GLvFLLTGfss----~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsG 781 (948)
.++|+|+++.+.+... .....+..+++.+||+|..+.. ..++|||+.+.. +.||-.|.-.|
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~--------------~~vTHvV~~~~~-~~~~~~A~~~~ 69 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFN--------------KQVTHVIFKDGY-QSTWDKAQKRG 69 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCC--------------TTCCEEEEESCC-HHHHHHHHHHT
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccC--------------CCccEEEEeCCC-ChHHHHHhcCC
Confidence 4699999999955542 1234599999999999986633 135666665432 34566688889
Q ss_pred cceechHHHHHHHhcCCCCCCCcccccCc
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMILSS 810 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI~S~ 810 (948)
++||++.||.||+++|+.+||+.|.+..+
T Consensus 70 i~iV~~~Wv~~C~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 70 VKLVSVLWVEKCRTAGAHIDESLFPAANM 98 (107)
T ss_dssp CEEECHHHHHHHHHHTSCCCGGGSBCCCT
T ss_pred CEEECHHHHHHHHHhCccCChhcccCCCC
Confidence 99999999999999999999999998754
No 29
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=98.71 E-value=4.1e-08 Score=91.87 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=64.3
Q ss_pred cCCCCCCCeEEEEecC-CchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHh--hcCce
Q 002242 827 NHKYIFGRVGIMLHGK-PSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAF--EKKIA 903 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK-~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Ar--r~gIP 903 (948)
.+..+|+||.|||.|. ....+.|.++|+..||+|+..+ ...++|||+.+.. ..++...+ ..+++
T Consensus 36 ~~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l----------~~~vTHvI~~~~~---~~~~~~~~~~~~~~~ 102 (132)
T 1wf6_A 36 APEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQL----------NEDVTHVIVGDYD---DELKQFWNKSAHRPH 102 (132)
T ss_dssp CCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSC----------CSSCCEEEESSCC---SHHHHHHHHSCCCCC
T ss_pred ccccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcC----------CCCCeEEEECCch---HHHHHHHHhhCCCCe
Confidence 4568999999999994 4556789999999999998533 2346788887532 22333222 25799
Q ss_pred eechHHHHHHHHhCCccCCC
Q 002242 904 MVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 904 ~VpsEWIIESImsgkLLPf~ 923 (948)
+|..+||.+||..|++||-.
T Consensus 103 iV~~~Wv~dsi~~~~ll~e~ 122 (132)
T 1wf6_A 103 VVGAKWLLECFSKGYMLSEE 122 (132)
T ss_dssp EEEHHHHHHHHHHSSCCCSG
T ss_pred EechHHHHHHHHcCCcCCHh
Confidence 99999999999999999965
No 30
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=98.71 E-value=2.7e-08 Score=87.35 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=62.4
Q ss_pred cCCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceee
Q 002242 827 NHKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMV 905 (948)
Q Consensus 827 ~~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~V 905 (948)
...++|+|+.|||.| ....++++.++|++.||++...+ ....+++||++..... ..+ .++ ++++|
T Consensus 8 ~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~---------~~~~~THlI~~~~~~~--k~~-~~~--~~~iV 73 (97)
T 2ebw_A 8 TSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYY---------SRSKTTHIIATNLPNA--KIK-ELK--GEKVI 73 (97)
T ss_dssp CCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSC---------CSSSCCEEECSCCCTT--HHH-HTS--SSCCB
T ss_pred CCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeec---------CCCCCEEEEecCCChH--HHH-Hhc--CCCEe
Confidence 456899999999999 44557899999999999976321 1134678887765421 111 122 89999
Q ss_pred chHHHHHHHHhCCccCCC
Q 002242 906 PASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 906 psEWIIESImsgkLLPf~ 923 (948)
..+||.+||..|++||..
T Consensus 74 ~p~Wl~dci~~~~~l~~~ 91 (97)
T 2ebw_A 74 RPEWIVESIKAGRLLSYI 91 (97)
T ss_dssp CTHHHHHHHHHTSCCCSG
T ss_pred ChHHHHHHHHcCCccCch
Confidence 999999999999999976
No 31
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.69 E-value=2e-08 Score=97.72 Aligned_cols=97 Identities=23% Similarity=0.367 Sum_probs=69.6
Q ss_pred cccccccceEEEEcC-CCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCc-EEECCCCcch--HHHH-HHh
Q 002242 704 VKRLIFQGIKFLLTG-FSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLP-VVICPKKLKT--TKFL-YGC 778 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTG-fss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~-VVI~~k~~RT--~KfL-~GI 778 (948)
.+..+|.|+.|+++| +....+.+|..||+.+||+|+...+... ..+..+ +||.+....+ .|+. .+.
T Consensus 111 ~~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~---------~~~~~~~ivi~~~~~~~~~~~~~~~a~ 181 (214)
T 1t15_A 111 QDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFT---------LGTGVHPIVVVQPDAWTEDNGFHAIGQ 181 (214)
T ss_dssp TTSCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCC---------CSTTCCEEEEECGGGCSSCGGGGSSTT
T ss_pred CCCcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccc---------cCCCCccEEEECCCcccchhhHHHHHH
Confidence 356899999999977 6555577799999999999997644110 012223 4444422221 2332 345
Q ss_pred hcCcceechHHHHHHHhcCCCCCCCcccccC
Q 002242 779 AVNAFILKAKWLTDSVAAGSTVSPAKYMILS 809 (948)
Q Consensus 779 AsGaWILKpsWLkDSiqAGk~LPEekYeI~S 809 (948)
..|++||+++||.||+.+++.+|+++|+++.
T Consensus 182 ~~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 182 MCEAPVVTREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp TCSSCEEEHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred hcCCcEEeccHHHHhHhhcCcCCCcceeecc
Confidence 6899999999999999999999999998863
No 32
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=98.69 E-value=4.4e-08 Score=88.07 Aligned_cols=88 Identities=11% Similarity=0.164 Sum_probs=65.0
Q ss_pred cCCCCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceee
Q 002242 827 NHKYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMV 905 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~V 905 (948)
...++|.|+.|+|.|.- .-++.+.++|++.||+|...+ +..++|+|+.+...........|++.|||+|
T Consensus 11 ~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~----------s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV 80 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSF----------DETVTHFIYQGRPNDTNREYKSVKERGVHIV 80 (107)
T ss_dssp ---CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSC----------CTTCCEEECCCCTTCCCHHHHHHHHTTCEEE
T ss_pred cccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccc----------cCCceEEEecCCCCCCCHHHHHHHHCCCeEe
Confidence 34579999999999954 345799999999999998543 2346788875422111112345777899999
Q ss_pred chHHHHHHHHhCCccCCCC
Q 002242 906 PASWIIKSLHIGMLLPQTQ 924 (948)
Q Consensus 906 psEWIIESImsgkLLPf~~ 924 (948)
+.+||.+|+..|++||...
T Consensus 81 ~~~Wl~~c~~~~~~l~e~~ 99 (107)
T 3l3e_A 81 SEHWLLDCAQECKHLPESL 99 (107)
T ss_dssp CHHHHHHHHHHTSCCCGGG
T ss_pred cHHHHHHHHHhCCCCchhh
Confidence 9999999999999999663
No 33
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=4.2e-08 Score=89.37 Aligned_cols=92 Identities=21% Similarity=0.395 Sum_probs=65.0
Q ss_pred ccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcce
Q 002242 705 KRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWI 784 (948)
.+.||.|++|.+.+-. -+.+++.+|+.+||+|..+... ..++-+. ......+|+|++++. .+- ...+.-+
T Consensus 9 ~~~LF~g~~F~i~~e~--p~~~le~~I~~~GG~v~~~~~~--~~g~~~~-~~~~~iTh~I~drp~--~~~---~~~~r~~ 78 (100)
T 2ep8_A 9 HKKLFEGLKFFLNREV--PREALAFIIRSFGGEVSWDKSL--CIGATYD-VTDSRITHQIVDRPG--QQT---SVIGRCY 78 (100)
T ss_dssp SCCTTSSCEEECCSSS--CHHHHHHHHHHTTCEEECCTTT--SSCCCSC-TTCTTCCEEECSCTT--TSC---CBTTBEE
T ss_pred hHHHcCCcEEEEecCC--CHHHHHHHHHHcCCEEEecccc--ccCcccc-cCCCceEEEEecccc--hhh---hcCCCeE
Confidence 4679999999996532 3567999999999999876320 0000000 113356788988753 111 2367799
Q ss_pred echHHHHHHHhcCCCCCCCccc
Q 002242 785 LKAKWLTDSVAAGSTVSPAKYM 806 (948)
Q Consensus 785 LKpsWLkDSiqAGk~LPEekYe 806 (948)
|+|.||.||+.++++||++.|.
T Consensus 79 VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 79 VQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp ECTHHHHHHHHHTSCCCTTTCC
T ss_pred EcchHHHHHHhcCCcCChhhcC
Confidence 9999999999999999999994
No 34
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.65 E-value=3.4e-08 Score=97.60 Aligned_cols=99 Identities=17% Similarity=0.365 Sum_probs=60.6
Q ss_pred ccccccceEEEEcC-CCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEE-CCCCc-chHHHH-HHhhc
Q 002242 705 KRLIFQGIKFLLTG-FSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVI-CPKKL-KTTKFL-YGCAV 780 (948)
Q Consensus 705 Ks~IF~GLvFLLTG-fss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI-~~k~~-RT~KfL-~GIAs 780 (948)
+..+|.|+.|+++| +....+.+|..||+.+||+|+...+.... .....++|| .+... +..++- .+...
T Consensus 114 ~~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~--------~~~~~~~vvv~~~~~~~~~~~~~l~~~~ 185 (229)
T 1l0b_A 114 QEKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTR--------DTGAHPIVLVQPSAWTEDNDCPDIGQLC 185 (229)
T ss_dssp C--CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGG--------CCSSCCEEEEC-----------------
T ss_pred hhhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccc--------cCCCceEEEEcCCccchhhhHHHHHHHc
Confidence 35899999999977 55556778999999999999987541100 011234444 44332 233332 12357
Q ss_pred CcceechHHHHHHHhcCCCCCCCcccccCcc
Q 002242 781 NAFILKAKWLTDSVAAGSTVSPAKYMILSSQ 811 (948)
Q Consensus 781 GaWILKpsWLkDSiqAGk~LPEekYeI~S~k 811 (948)
|++||+++||.||+.+++++|++.|+++...
T Consensus 186 ~i~iVs~~WlldsI~~~~~~~~~~Y~l~~~~ 216 (229)
T 1l0b_A 186 KGRLVMWDWVLDSISVYRCRDLDAYLVQNIT 216 (229)
T ss_dssp --CEEETHHHHHHHHTTSCCCGGGGBCC---
T ss_pred CCeEeehhHHHHHHhcCCcCCccceEccccc
Confidence 9999999999999999999999999998644
No 35
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=98.57 E-value=1.8e-07 Score=86.18 Aligned_cols=85 Identities=16% Similarity=0.261 Sum_probs=65.3
Q ss_pred cCCCCCCCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHh-hcCce
Q 002242 827 NHKYIFGRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAF-EKKIA 903 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Ar-r~gIP 903 (948)
.++.+|.|++|||.|.. .-++.+.++|.+-||+|.. ++ +..+++||++.+.. ..+....+ ..++.
T Consensus 3 ~Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~---~~-------~~~vTHvIt~~~~d--~~~~~a~~~~p~~~ 70 (104)
T 3pc6_A 3 ELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELED---YM-------NERVQFVITAQEWD--PNFEEALMENPSLA 70 (104)
T ss_dssp CCCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECS---SC-------CTTCCEEEESSCCC--HHHHHHHTTCTTCE
T ss_pred CcchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEc---cc-------CCCceEEEeCCCCC--hhHHHHhhhCCCCe
Confidence 35789999999999965 4456899999999999763 21 23578999887643 23433232 33899
Q ss_pred eechHHHHHHHHhCCccCCC
Q 002242 904 MVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 904 ~VpsEWIIESImsgkLLPf~ 923 (948)
.|..+||.+||-.++|||..
T Consensus 71 ~V~P~WI~~Ci~~~klvp~~ 90 (104)
T 3pc6_A 71 FVRPRWIYSCNEKQKLLPHQ 90 (104)
T ss_dssp EECHHHHHHHHHHTSCCCGG
T ss_pred EEccHHHHHHHhcCccCCcc
Confidence 99999999999999999976
No 36
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.9e-07 Score=87.08 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=66.0
Q ss_pred cCCCCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceee
Q 002242 827 NHKYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMV 905 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~V 905 (948)
....+|.|+.|+|.|.. .-++.+..+|+..||+|...+ ...++|+|+.+.... -...|.+.+||+|
T Consensus 18 ~~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~----------s~~~ThLI~~~~~~~---K~~~A~~~gi~IV 84 (129)
T 2d8m_A 18 ELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDW----------TRDSTHLICAFANTP---KYSQVLGLGGRIV 84 (129)
T ss_dssp HHTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSC----------CTTCCEEEESSSSCH---HHHHHHHHTCEEE
T ss_pred CccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCc----------CCCCeEEEecCCCCh---HHHHHHHCCCcEe
Confidence 34568999999999954 346799999999999998544 223678888865432 2235777899999
Q ss_pred chHHHHHHHHhCCccCCC
Q 002242 906 PASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 906 psEWIIESImsgkLLPf~ 923 (948)
..+||.+||..+++||..
T Consensus 85 ~~~Wl~d~~~~~~~l~e~ 102 (129)
T 2d8m_A 85 RKEWVLDCHRMRRRLPSQ 102 (129)
T ss_dssp ETHHHHHHHHTTSCCCGG
T ss_pred cHHHHHHHHHhCCcCChH
Confidence 999999999999999955
No 37
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.50 E-value=2.9e-07 Score=84.66 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=65.5
Q ss_pred cCCCCCCCeEEEEecCC-----chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcC
Q 002242 827 NHKYIFGRVGIMLHGKP-----SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKK 901 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~-----sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~g 901 (948)
...++|+|+.+|+.+.. ...+.|..+|+..||+|.+.+. ..+++||+.+.... -.+.|++.+
T Consensus 3 ~~~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~----------~~vTHvV~~~~~~~---~~~~A~~~~ 69 (107)
T 3pa6_A 3 MAAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFN----------KQVTHVIFKDGYQS---TWDKAQKRG 69 (107)
T ss_dssp -CCCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCC----------TTCCEEEEESCCHH---HHHHHHHHT
T ss_pred ccccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccC----------CCccEEEEeCCCCh---HHHHHhcCC
Confidence 45679999999998742 3457899999999999997653 24678887765532 234578889
Q ss_pred ceeechHHHHHHHHhCCccCCC
Q 002242 902 IAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 902 IP~VpsEWIIESImsgkLLPf~ 923 (948)
|++|+.+||.+|+..|+++|-.
T Consensus 70 i~iV~~~Wv~~C~~~~~~vdE~ 91 (107)
T 3pa6_A 70 VKLVSVLWVEKCRTAGAHIDES 91 (107)
T ss_dssp CEEECHHHHHHHHHHTSCCCGG
T ss_pred CEEECHHHHHHHHHhCccCChh
Confidence 9999999999999999999843
No 38
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.35 E-value=4.2e-07 Score=89.51 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=64.5
Q ss_pred cccccccceEEEEcC-CCchhHHHHHHHHHHhCCEeecCCCCCCCc---CCccccC------CCCCCcEEECCCCcchHH
Q 002242 704 VKRLIFQGIKFLLTG-FSSQKEKEIEVLIQKYGGLVLLDIPPPNSQ---GKRCSRS------HSQQLPVVICPKKLKTTK 773 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTG-fss~keKELtkLIe~LGG~V~sDip~pldk---~kR~aef------~st~~~VVI~~k~~RT~K 773 (948)
+...+|.|+.|+++| +....+.+|..||+..||+|+...|.+.+. ......| +...++++|..++. .|
T Consensus 100 ~~~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~--~~ 177 (210)
T 2nte_A 100 LLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDL--CN 177 (210)
T ss_dssp TCCCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSC--SS
T ss_pred ccccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccc--cc
Confidence 357899999999998 444557789999999999999866632111 0000001 00123444444332 12
Q ss_pred HH--HHhhcCcceechHHHHHHHhcCCCCCCCc
Q 002242 774 FL--YGCAVNAFILKAKWLTDSVAAGSTVSPAK 804 (948)
Q Consensus 774 fL--~GIAsGaWILKpsWLkDSiqAGk~LPEek 804 (948)
+. .+.-.++++|+++||.||+.++++||.++
T Consensus 178 ~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~~ 210 (210)
T 2nte_A 178 YHPERVRQGKVWKAPSSWFIDCVMSFELLPLDS 210 (210)
T ss_dssp CCCSCSEETTEEEEEHHHHHHHHHHTSCCCSCC
T ss_pred cCHHHHhccCcccccHHHHHHHHHhCeeccCCC
Confidence 21 12235679999999999999999999864
No 39
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.34 E-value=2e-07 Score=94.80 Aligned_cols=91 Identities=13% Similarity=0.209 Sum_probs=49.3
Q ss_pred cccccccceEEEEcCCCchhHHH-HHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCc--ch--H-HHHHH
Q 002242 704 VKRLIFQGIKFLLTGFSSQKEKE-IEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKL--KT--T-KFLYG 777 (948)
Q Consensus 704 ~Ks~IF~GLvFLLTGfss~keKE-LtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~--RT--~-KfL~G 777 (948)
.+..+|+|++|.++|+....+.+ +..+|+.+||+|..+.. ..+||||+.... |. + ++-..
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~--------------~~t~hVV~~~~~~~~~~~~~~~~~~ 221 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQS--------------LCNLIIIPYTDPILRKDCMNEVHEK 221 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSS--------------SCSEEECCCSSTTTHHHHSSHHHHT
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccC--------------CCEEEEEeCCCccchHHHHHHHHHH
Confidence 55789999999999975434444 78899999999986521 245777775321 21 1 12223
Q ss_pred hhcC----------cceechHHHHHHHhcCCCCCCCccccc
Q 002242 778 CAVN----------AFILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 778 IAsG----------aWILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
++.+ ..+|++.||.||+++|+.+|++.|..+
T Consensus 222 ~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 222 IKEQIKASDTIPKIARVVAPEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp TTTTTTSSSSCCCCCEEECTHHHHHHHTTSCCCSSCCC---
T ss_pred HHhhcccccccCCCCEEecHHHHHHHHHcCCcCCHHHcCCC
Confidence 3433 389999999999999999999999754
No 40
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.33 E-value=3.7e-07 Score=83.21 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=62.6
Q ss_pred CCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 828 HKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 828 ~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
..++|.||.|++.| ....++.+.++|+..||++...+ ...+++||+.+... . -...|.+.+|++|+
T Consensus 9 ~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~----------~~~~THLV~~~~~~--~-K~~~a~~~~i~IV~ 75 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVG----------DERCTHLIVEENTV--K-DLPFEPSKKLFVVK 75 (109)
T ss_dssp CCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTT----------CTTCSEEEECTTTC--S-SCSSCCCTTSEEEC
T ss_pred cCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEeccc----------CCCccEEEEeCCcc--H-HHHHHHHCCCeEec
Confidence 45799999999999 44556789999999999987322 22355777664332 1 12346677999999
Q ss_pred hHHHHHHHHhCCccCCC
Q 002242 907 ASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 907 sEWIIESImsgkLLPf~ 923 (948)
.+||.+||..|+++|-.
T Consensus 76 ~~Wl~dsi~~g~~ldE~ 92 (109)
T 2cou_A 76 QEWFWGSIQMDARAGET 92 (109)
T ss_dssp HHHHHHHHHTTSCCCGG
T ss_pred HHHHHHHHHcCCcCChh
Confidence 99999999999999843
No 41
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.30 E-value=9.9e-07 Score=79.57 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=61.6
Q ss_pred ccCCCCCCCeEEEEecCCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceee
Q 002242 826 DNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMV 905 (948)
Q Consensus 826 k~~~~LFdG~rfyL~GK~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~V 905 (948)
+.++.+|.|++|||.++..-.++|.|.|-|-||+|+... ....+++||.+.+ ...+...|
T Consensus 11 ~~LpdiFsg~~~~l~~~v~~~~~l~RyiiAfgG~v~~~~---------~~~~vTHvI~~~~-----------~~~~~~~V 70 (88)
T 3pc7_A 11 KVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEF---------DMTSATHVLGSRD-----------KNPAAQQV 70 (88)
T ss_dssp CCCCCCSTTCEECCCTTSTTHHHHHHHHHHTTCEECCGG---------GGGGCSEEESCCT-----------TCTTSEEE
T ss_pred CcCChhhcCeEEEccCCcCchhhheeeeeecCCEEeccc---------CCCcCeEEecCCC-----------cCCCCcEE
Confidence 367889999999999866544799999999999998511 1235678886643 24488999
Q ss_pred chHHHHHHHHhCCccCC
Q 002242 906 PASWIIKSLHIGMLLPQ 922 (948)
Q Consensus 906 psEWIIESImsgkLLPf 922 (948)
..+||.+||-.|+|||-
T Consensus 71 ~p~WI~dcI~k~~Ll~~ 87 (88)
T 3pc7_A 71 SPEWIWACIRKRRLVAP 87 (88)
T ss_dssp CHHHHHHHHHHTSCCSC
T ss_pred chHHHHHHHhCCcccCC
Confidence 99999999999999984
No 42
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.25 E-value=2.2e-06 Score=85.07 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=70.6
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
..+|+|+.|++|+.......++..||+..||+|+...+... ...++||.... ...++-.+...|++|+
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~-----------~~~~ivI~~~~-d~~~~~~~~~~~i~vv 180 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSY-----------KPQRVVITCPQ-DFPHCSIPLRVGLPLL 180 (209)
T ss_dssp SCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSC-----------CTTEEEECCGG-GGGGCHHHHHHTCCEE
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCC-----------CCceEEEECcc-cHHHHHHHHHCCCeEE
Confidence 48999999999998766667899999999999997755210 12356774432 2334556788899999
Q ss_pred chHHHHHHHhcCCCCCCCcccccC
Q 002242 786 KAKWLTDSVAAGSTVSPAKYMILS 809 (948)
Q Consensus 786 KpsWLkDSiqAGk~LPEekYeI~S 809 (948)
+++||.+|+..++ ++++.|.|..
T Consensus 181 s~eWi~~sI~~q~-ld~e~y~l~~ 203 (209)
T 2etx_A 181 SPEFLLTGVLKQE-AKPEAFVLSP 203 (209)
T ss_dssp CTHHHHHHHHHTC-CCGGGGBCCT
T ss_pred cHHHHHHHHHhcc-cChHHheecC
Confidence 9999999999977 4999998865
No 43
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.24 E-value=4.1e-06 Score=80.73 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=68.7
Q ss_pred CCCCCCCeEEEEec---CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHH---HH----
Q 002242 828 HKYIFGRVGIMLHG---KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRH---CA---- 897 (948)
Q Consensus 828 ~~~LFdG~rfyL~G---K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~---~A---- 897 (948)
+...|+|+.|||.+ -...++.|.+|++..|++|. ++.+..+++||+++.+.. +.+.. ..
T Consensus 7 ~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~----------~~~S~~VTHVV~E~~s~~-~~~~~L~~~~~~l~ 75 (133)
T 2dun_A 7 GSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVL----------DACSSEATHVVMEETSAE-EAVSWQERRMAAAP 75 (133)
T ss_dssp SSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEEC----------SSCCTTCCEEEESSCCHH-HHHHHHHHHHHHSC
T ss_pred CccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEec----------cccCCCceEEEecCCCHH-HHHHHHHHhhcccC
Confidence 34789999999997 34567899999999999999 456777899999776542 22211 22
Q ss_pred -hhcCceeechHHHHHHHHhCCccCCCCCCCCC
Q 002242 898 -FEKKIAMVPASWIIKSLHIGMLLPQTQDKHIP 929 (948)
Q Consensus 898 -rr~gIP~VpsEWIIESImsgkLLPf~~d~~~~ 929 (948)
...++.++..+||.+||-.|+++|.. .++..
T Consensus 76 ~~~~~~~lLdisWltecm~~g~pV~~e-~~~~l 107 (133)
T 2dun_A 76 PGCTPPALLDISWLTESLGAGQPVPVE-CRHRL 107 (133)
T ss_dssp TTCCCCEEEEHHHHHHHHHHTSCCCCC-TTTSC
T ss_pred cCCCCcEEeccHHHHHHHhcCCcCCcc-cceEe
Confidence 22458899999999999999999986 44443
No 44
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.23 E-value=4.7e-07 Score=82.88 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=65.7
Q ss_pred ccccccceEEEE--cCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCC-C--cchHHHHHH--
Q 002242 705 KRLIFQGIKFLL--TGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPK-K--LKTTKFLYG-- 777 (948)
Q Consensus 705 Ks~IF~GLvFLL--TGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k-~--~RT~KfL~G-- 777 (948)
+..+|+|++|.+ .|+.....+-..++++.+||.|..+.. . .++|||+++ . ...+|.+..
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~-------------~-~vTHVVvd~~~s~~~~l~~l~~~~ 73 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQG-------------P-GVTHIVVDEGMDYERALRLLRLPQ 73 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTC-------------T-TCCEEEECSSSCHHHHHHHTTCSS
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccC-------------C-CccEEEEcCCCCHHHHHHHHhhcc
Confidence 467899988877 455443334467799999999986632 2 345666653 2 356666663
Q ss_pred hhcCcceechHHHHHHHhcCCCCCCCccccc
Q 002242 778 CAVNAFILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 778 IAsGaWILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
+..++.+|+++||.||+++|+.||++.|.+.
T Consensus 74 l~~~~~iV~~~Wv~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 74 LPPGAQLVKSAWLSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp CCSSCEEEEHHHHHHHHHTCSCCCGGGTBCS
T ss_pred cCCCcEEecCchHHHHHhcCcccCccccccc
Confidence 5567789999999999999999999999764
No 45
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=2.7e-06 Score=80.44 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=64.5
Q ss_pred cCCCCCCCeEEEEecC-C--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHh-----
Q 002242 827 NHKYIFGRVGIMLHGK-P--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAF----- 898 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK-~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Ar----- 898 (948)
.+..+|+|+.|||... . ...+.|.++++..||+|+. +.+..+++||+++.+. .. ++...+
T Consensus 16 ~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~----------~ls~~VTHVVve~~~~-~e-~~~~l~~~~l~ 83 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVEN----------ELSDSVTHIVAENNSG-SD-VLEWLQAQKVQ 83 (120)
T ss_dssp SSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECS----------SCCTTCCEEEESSCCH-HH-HHHHHHHCCCC
T ss_pred CcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEee----------ccCCCcCEEEecCCCH-HH-HHHHHhccccc
Confidence 5678999999999862 2 3557899999999999994 3345688999975543 12 222112
Q ss_pred -hcCceeechHHHHHHHHhCCccCCC
Q 002242 899 -EKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 899 -r~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
..+..+|..+||.+||-.|+++|..
T Consensus 84 ~~~~~~lv~i~Wl~esmk~g~lv~ee 109 (120)
T 2coe_A 84 VSSQPELLDVSWLIECIGAGKPVEMT 109 (120)
T ss_dssp CSSCCEEEEHHHHHHHHHTTSCCCCS
T ss_pred cccccEEeecHHHHHHHHcCCccCcc
Confidence 2268999999999999999999987
No 46
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.20 E-value=2.2e-06 Score=88.50 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=73.1
Q ss_pred ccccccceEEEEcCCCchh-HHHHHHHHHHhCCEeecCCC-CCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCc
Q 002242 705 KRLIFQGIKFLLTGFSSQK-EKEIEVLIQKYGGLVLLDIP-PPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNA 782 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~k-eKELtkLIe~LGG~V~sDip-~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGa 782 (948)
+..+|.|+.|+++|..... ...+..||+.+||+|+.... ... ..+.....++|||++....+.++.+|...|+
T Consensus 152 ~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~-----~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i 226 (259)
T 1kzy_C 152 RENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAH-----NKDIALGVFDVVVTDPSCPASVLKCAEALQL 226 (259)
T ss_dssp CCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSS-----CCCSCGGGCSEEEECTTCCHHHHHHHHHHTC
T ss_pred cCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchh-----hhhccCCCCeEEEECCCChHHHHHHHHhcCC
Confidence 4689999999998876432 33488899999999986643 110 0111123467888876556678889999999
Q ss_pred ceechHHHHHHHhcCCCCCCCcc
Q 002242 783 FILKAKWLTDSVAAGSTVSPAKY 805 (948)
Q Consensus 783 WILKpsWLkDSiqAGk~LPEekY 805 (948)
+||+.+||.+|+..|+.+|++.|
T Consensus 227 ~iVs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 227 PVVSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp CEECHHHHHHHHHHTSCCCTTSS
T ss_pred CEecHHHHHHHHHhCCcCCCCcC
Confidence 99999999999999999999866
No 47
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=98.17 E-value=1.6e-06 Score=80.67 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=62.7
Q ss_pred CCCCCCCeEEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 828 HKYIFGRVGIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 828 ~~~LFdG~rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
..++|.||.|++.| ...-+..+.++|+..||++-..+ .. .++++|+.+.... -+ .+|.+.+|+||+
T Consensus 18 ~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l---------~~-~cTHLV~~~~~~~--K~-~~A~~~~i~IVs 84 (112)
T 3l46_A 18 GVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLG---------DE-RCTHLVVEENIVK--DL-PFEPSKKLYVVK 84 (112)
T ss_dssp CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTT---------CT-TCSEEEECTTTBS--SC-SSCCCSSCEEEE
T ss_pred CCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECccc---------CC-CceEEEecCCchh--hH-HHHHHCCeeEec
Confidence 45799999999999 33446789999999999988422 12 2456776654421 12 367778999999
Q ss_pred hHHHHHHHHhCCccCCC
Q 002242 907 ASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 907 sEWIIESImsgkLLPf~ 923 (948)
.+||.+||-.|..+|-.
T Consensus 85 ~eWl~dsi~~g~~ldE~ 101 (112)
T 3l46_A 85 QEWFWGSIQMDARAGET 101 (112)
T ss_dssp HHHHHHHHHHTSCCCGG
T ss_pred HHHHHHHHHcCCccChh
Confidence 99999999999999843
No 48
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=4.1e-06 Score=76.36 Aligned_cols=89 Identities=17% Similarity=0.296 Sum_probs=62.3
Q ss_pred cCCCCCCCeEEEEecCCchhhhHHHHHHhcCceEEeehh-hhhccccccccceeEEEecCCcchhhhhHHHHhhcCceee
Q 002242 827 NHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLH-WLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMV 905 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~sFkDkfsrIIKAGGGQVVktLa-~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~V 905 (948)
..+.||+|+.|||....+ ++.+..+|++.||+|..... ..--+.+......+|+|++.... +. +..+..+|
T Consensus 8 ~~~~LF~g~~F~i~~e~p-~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~-----~~--~~~~r~~V 79 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNREVP-REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQ-----QT--SVIGRCYV 79 (100)
T ss_dssp CSCCTTSSCEEECCSSSC-HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTT-----SC--CBTTBEEE
T ss_pred chHHHcCCcEEEEecCCC-HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccch-----hh--hcCCCeEE
Confidence 456799999999988654 68999999999998874211 00000011234677888774321 11 23466899
Q ss_pred chHHHHHHHHhCCccCCC
Q 002242 906 PASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 906 psEWIIESImsgkLLPf~ 923 (948)
..+||.+||-.++|||..
T Consensus 80 qPqWV~Dcin~~~lLp~~ 97 (100)
T 2ep8_A 80 QPQWVFDSVNARLLLPVA 97 (100)
T ss_dssp CTHHHHHHHHHTSCCCTT
T ss_pred cchHHHHHHhcCCcCChh
Confidence 999999999999999975
No 49
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.11 E-value=3.9e-06 Score=75.68 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=58.7
Q ss_pred cccccceEEEE-cCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcce
Q 002242 706 RLIFQGIKFLL-TGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 706 s~IF~GLvFLL-TGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWI 784 (948)
..||.|++|.| .++++ .+.+...|..+||.|..+.. ....+|||++.. .-.|+-.
T Consensus 14 pdiFsg~~~~l~~~v~~--~~~l~RyiiAfgG~v~~~~~-------------~~~vTHvI~~~~---------~~~~~~~ 69 (88)
T 3pc7_A 14 LDIFTGVRLYLPPSTPD--FSRLRRYFVAFDGDLVQEFD-------------MTSATHVLGSRD---------KNPAAQQ 69 (88)
T ss_dssp CCCSTTCEECCCTTSTT--HHHHHHHHHHTTCEECCGGG-------------GGGCSEEESCCT---------TCTTSEE
T ss_pred ChhhcCeEEEccCCcCc--hhhheeeeeecCCEEecccC-------------CCcCeEEecCCC---------cCCCCcE
Confidence 78999999999 55543 35699999999999976411 224567777653 5889999
Q ss_pred echHHHHHHHhcCCCCCCC
Q 002242 785 LKAKWLTDSVAAGSTVSPA 803 (948)
Q Consensus 785 LKpsWLkDSiqAGk~LPEe 803 (948)
|+|+||.||+.+|+.||+.
T Consensus 70 V~p~WI~dcI~k~~Ll~~~ 88 (88)
T 3pc7_A 70 VSPEWIWACIRKRRLVAPS 88 (88)
T ss_dssp ECHHHHHHHHHHTSCCSCC
T ss_pred EchHHHHHHHhCCcccCCC
Confidence 9999999999999999873
No 50
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.10 E-value=6.2e-06 Score=85.20 Aligned_cols=82 Identities=13% Similarity=0.260 Sum_probs=59.0
Q ss_pred CCCCCCeEEEEe-c-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 829 KYIFGRVGIMLH-G-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 829 ~~LFdG~rfyL~-G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
..||+|+.||+. | ....++++.++|+..||+++..+ ...+.+||++. .+ ...+...+.+++++|.
T Consensus 8 s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~----------~~~t~~iIa~~-~~--~k~~~~~~~g~~~IV~ 74 (263)
T 3ii6_X 8 SNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNP----------GPDTYCVIAGS-EN--IRVKNIILSNKHDVVK 74 (263)
T ss_dssp CCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSC----------CTTEEEEECSS-CC--HHHHHHHHSCSCCEEC
T ss_pred cccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecC----------CCCEEEEEeCC-CC--HHHHHHHhcCCCCEee
Confidence 479999999996 5 44667899999999999998422 12345566543 32 1122223334599999
Q ss_pred hHHHHHHHHhCCccCCC
Q 002242 907 ASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 907 sEWIIESImsgkLLPf~ 923 (948)
.+||.+||-.|+|||+.
T Consensus 75 p~Wv~Dci~~~~llp~~ 91 (263)
T 3ii6_X 75 PAWLLECFKTKSFVPWQ 91 (263)
T ss_dssp HHHHHHHHHHTSCCCCC
T ss_pred hHHHHHHHhcCCcCCCC
Confidence 99999999999999987
No 51
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.8e-05 Score=74.93 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=63.3
Q ss_pred cccccceEEEE--cCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC--cchHHHHH----H
Q 002242 706 RLIFQGIKFLL--TGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK--LKTTKFLY----G 777 (948)
Q Consensus 706 s~IF~GLvFLL--TGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~--~RT~KfL~----G 777 (948)
..+|+|+++.+ .++......-++++++.+||+|.++.. ...+|||+ ... .+...++. .
T Consensus 18 ~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls-------------~~VTHVVv-e~~~~~e~~~~l~~~~l~ 83 (120)
T 2coe_A 18 DIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELS-------------DSVTHIVA-ENNSGSDVLEWLQAQKVQ 83 (120)
T ss_dssp CCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCC-------------TTCCEEEE-SSCCHHHHHHHHHHCCCC
T ss_pred ccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccC-------------CCcCEEEe-cCCCHHHHHHHHhccccc
Confidence 47999998766 565543333399999999999987632 22445555 433 23444554 2
Q ss_pred hhcCcceechHHHHHHHhcCCCCCCCccccc
Q 002242 778 CAVNAFILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 778 IAsGaWILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
.+.+..+|+.+||.||+++|+.+|++.|...
T Consensus 84 ~~~~~~lv~i~Wl~esmk~g~lv~ee~~~~l 114 (120)
T 2coe_A 84 VSSQPELLDVSWLIECIGAGKPVEMTGKHQL 114 (120)
T ss_dssp CSSCCEEEEHHHHHHHHHTTSCCCCSSSSBC
T ss_pred cccccEEeecHHHHHHHHcCCccCcccceEe
Confidence 5567899999999999999999999766544
No 52
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.02 E-value=1e-05 Score=82.92 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=61.5
Q ss_pred CCCCCeEEEEecC--C--chhhhHHHHHHhcCceEEee-hhhhhcccc-c--------------cccceeEEEecCCcch
Q 002242 830 YIFGRVGIMLHGK--P--SFCTKFAVIVKHGGGQVFKT-LHWLVLSLE-T--------------QKNIVGVIVAENERRV 889 (948)
Q Consensus 830 ~LFdG~rfyL~GK--~--sFkDkfsrIIKAGGGQVVkt-La~l~qSld-D--------------qs~s~~yIIvedESs~ 889 (948)
.+|+|+.|+|.|. . .-+.++.++|+..||.|+.. ...+.+.-. . ......++|+....
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~-- 78 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFS-- 78 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCC--
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCC--
Confidence 3899999999986 2 34578999999999999853 111111000 0 01123566654332
Q ss_pred hhhhHH-HHhhcCceeechHHHHHHHHhCCccCCC
Q 002242 890 SRHLRH-CAFEKKIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 890 Sr~Lk~-~Arr~gIP~VpsEWIIESImsgkLLPf~ 923 (948)
+..++ .|...|||||+.+||.+||..++++|+.
T Consensus 79 -rt~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~ 112 (241)
T 2vxb_A 79 -RKVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFS 112 (241)
T ss_dssp -CCHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSG
T ss_pred -CcHHHHHHHHcCCCEecHHHHHHHHHcCCcCChh
Confidence 22333 4556799999999999999999999876
No 53
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=97.98 E-value=5e-06 Score=76.12 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=61.3
Q ss_pred cCCCCCCCeEEEEecC---CchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHh---hc
Q 002242 827 NHKYIFGRVGIMLHGK---PSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAF---EK 900 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK---~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Ar---r~ 900 (948)
.+..+|+|+.|||... ....+.+...++..||+|+..+ +..+++||+++..+....++..-. ..
T Consensus 7 ~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~----------~~~vTHVVvd~~~s~~~~l~~l~~~~l~~ 76 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQ----------GPGVTHIVVDEGMDYERALRLLRLPQLPP 76 (106)
T ss_dssp CGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTT----------CTTCCEEEECSSSCHHHHHHHTTCSSCCS
T ss_pred cCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeecc----------CCCccEEEEcCCCCHHHHHHHHhhcccCC
Confidence 3567999999999752 2334567779999999998533 224678888754433233332211 13
Q ss_pred CceeechHHHHHHHHhCCccCCC
Q 002242 901 KIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 901 gIP~VpsEWIIESImsgkLLPf~ 923 (948)
++.+|..+|+.+||..++|||-+
T Consensus 77 ~~~iV~~~Wv~dci~~~~llde~ 99 (106)
T 2jw5_A 77 GAQLVKSAWLSLCLQERRLVDVA 99 (106)
T ss_dssp SCEEEEHHHHHHHHHTCSCCCGG
T ss_pred CcEEecCchHHHHHhcCcccCcc
Confidence 56799999999999999999976
No 54
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.98 E-value=1e-05 Score=72.81 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=62.8
Q ss_pred ccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcce
Q 002242 705 KRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWI 784 (948)
....|.|+.|++||.-...|.++.++|+.+||+|...+. ..+.+||+.... .-|+-.|...|++|
T Consensus 4 ~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVs--------------kkt~~LV~g~~~-gsK~~kA~~lgI~I 68 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVS--------------RKTSYLVVGENP-GSKLEKARALGVPT 68 (92)
T ss_dssp CCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCS--------------SSCCCBEECSSS-STTHHHHHCSSSCC
T ss_pred CCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCccc--------------CCeeEEEeCCCC-ChHHHHHHHcCCcE
Confidence 356799999999999877778899999999999997754 134556666543 48999999999999
Q ss_pred echHHHHHHHh
Q 002242 785 LKAKWLTDSVA 795 (948)
Q Consensus 785 LKpsWLkDSiq 795 (948)
|+-+|+.+++.
T Consensus 69 i~E~~f~~~l~ 79 (92)
T 1l7b_A 69 LTEEELYRLLE 79 (92)
T ss_dssp EEHHHHHHHHH
T ss_pred EeHHHHHHHHH
Confidence 99999999885
No 55
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.91 E-value=3e-05 Score=71.86 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=65.2
Q ss_pred cccccceEEEEcCCCch-hHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcce
Q 002242 706 RLIFQGIKFLLTGFSSQ-KEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~-keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWI 784 (948)
...|.|+.|++||.-+. .|.++.++|+.+||+|...+. ..+.+||+....-+-|+--|...|++|
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVS--------------kkTd~LV~G~~~g~sK~~kA~~lgI~I 95 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVS--------------KKTNYLVMGRDSGQSKSDKAAALGTKI 95 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCC--------------TTCCEEEECBCCCHHHHHHHHHHTCEE
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCccc--------------CCceEEEECCCCChHHHHHHHHcCCeE
Confidence 45699999999999864 578899999999999997754 245677777665567999999999999
Q ss_pred echHHHHHHHhcC
Q 002242 785 LKAKWLTDSVAAG 797 (948)
Q Consensus 785 LKpsWLkDSiqAG 797 (948)
|+-+|+.+.+..+
T Consensus 96 i~E~~f~~ll~~~ 108 (109)
T 2k6g_A 96 IDEDGLLNLIRNL 108 (109)
T ss_dssp ECHHHHHHHHHHT
T ss_pred EeHHHHHHHHHhC
Confidence 9999999998765
No 56
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.88 E-value=2.2e-05 Score=73.32 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=70.1
Q ss_pred CCCCCeEEEEecCCc-hhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechH
Q 002242 830 YIFGRVGIMLHGKPS-FCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPAS 908 (948)
Q Consensus 830 ~LFdG~rfyL~GK~s-FkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsE 908 (948)
..|.|+.|.|.|+-. -++++..+|+..||+|..++. ..++|+|+.++-.....-...|+++|||+++-+
T Consensus 9 ~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVs----------kkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 9 KPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTAN----------KASLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp CSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCST----------TCSEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccc----------cCccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 479999999999532 468999999999999996553 236799988431000123357899999999999
Q ss_pred H----------HHHHHHhCCccCCCCCCCCC
Q 002242 909 W----------IIKSLHIGMLLPQTQDKHIP 929 (948)
Q Consensus 909 W----------IIESImsgkLLPf~~d~~~~ 929 (948)
| +++||....++|+..+..+-
T Consensus 79 ~l~~~~~~~~~~~~~i~k~~i~~w~~~~~~~ 109 (113)
T 2cok_A 79 FLQDVSASTKSLQELFLAHILSSWGAEVKSG 109 (113)
T ss_dssp HHHHHHSCCSCHHHHHHHTBCSSCCCSCSCC
T ss_pred HHHHHHhhchhHHHHHHHhcCCCCCCCcccC
Confidence 9 99999999999999876543
No 57
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=97.85 E-value=3.3e-05 Score=74.50 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=63.8
Q ss_pred cccccceEEEEc--CCCchhHHH-HHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC--cchHHHH--HH-
Q 002242 706 RLIFQGIKFLLT--GFSSQKEKE-IEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK--LKTTKFL--YG- 777 (948)
Q Consensus 706 s~IF~GLvFLLT--Gfss~keKE-LtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~--~RT~KfL--~G- 777 (948)
...|.|+.+.+= ++... |++ |++||+..||.|.+++. ...+|||+ ... .+.+.+| .-
T Consensus 8 ~~~F~~v~iyive~kmG~s-Rr~fL~~la~~kGf~v~~~~S-------------~~VTHVV~-E~~s~~~~~~~L~~~~~ 72 (133)
T 2dun_A 8 STRFPGVAIYLVEPRMGRS-RRAFLTGLARSKGFRVLDACS-------------SEATHVVM-EETSAEEAVSWQERRMA 72 (133)
T ss_dssp SCSEEEEEEEECHHHHCSH-HHHHHHHHHHHHTEEECSSCC-------------TTCCEEEE-SSCCHHHHHHHHHHHHH
T ss_pred ccccCccEEEEecCCcCHH-HHHHHHHHHHhcCCEeccccC-------------CCceEEEe-cCCCHHHHHHHHHHhhc
Confidence 468999998883 33333 445 99999999999987733 33445555 433 3666666 22
Q ss_pred ----hhcCcceechHHHHHHHhcCCCCCCCccccc
Q 002242 778 ----CAVNAFILKAKWLTDSVAAGSTVSPAKYMIL 808 (948)
Q Consensus 778 ----IAsGaWILKpsWLkDSiqAGk~LPEekYeI~ 808 (948)
=+.|..+|+.+|+.+|+++|+.+|++.|.+.
T Consensus 73 ~l~~~~~~~~lLdisWltecm~~g~pV~~e~~~~l 107 (133)
T 2dun_A 73 AAPPGCTPPALLDISWLTESLGAGQPVPVECRHRL 107 (133)
T ss_dssp HSCTTCCCCEEEEHHHHHHHHHHTSCCCCCTTTSC
T ss_pred ccCcCCCCcEEeccHHHHHHHhcCCcCCcccceEe
Confidence 2477999999999999999999999666444
No 58
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=4.5e-05 Score=71.25 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=65.3
Q ss_pred cccccceEEEEcCCCch-hHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCcce
Q 002242 706 RLIFQGIKFLLTGFSSQ-KEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFI 784 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~-keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWI 784 (948)
...|.|+.|++||.-.. .|.+++++|+.+||+|...+. .++.+||+....-+-|+--|...|++|
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVS--------------kkTd~LV~G~~~g~sKl~KA~~lgI~I 85 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVS--------------KKTNYLVMGRDSGQSKSDKAAALGTKI 85 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCC--------------SSCCEEEECSSCCSHHHHHHHHHTCEE
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEecccc--------------CCeeEEEecCCCChHHHHHHHHcCCeE
Confidence 45799999999999864 678899999999999987744 245677777665567999999999999
Q ss_pred echHHHHHHHhcC
Q 002242 785 LKAKWLTDSVAAG 797 (948)
Q Consensus 785 LKpsWLkDSiqAG 797 (948)
|+-+|+.+.+..+
T Consensus 86 isE~~f~~ll~~~ 98 (112)
T 2ebu_A 86 IDEDGLLNLIRTM 98 (112)
T ss_dssp EEHHHHHHHHHHS
T ss_pred EeHHHHHHHHhhC
Confidence 9999999999753
No 59
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.78 E-value=4.1e-05 Score=71.51 Aligned_cols=86 Identities=17% Similarity=0.134 Sum_probs=67.1
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC--cchHHHHHHhhcCcc
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK--LKTTKFLYGCAVNAF 783 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~--~RT~KfL~GIAsGaW 783 (948)
...|.|++|.+||--...|.++.++|+.+||+|.+.+. ..+.+||+... .-.-|+--|-..|++
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVs--------------kkT~~lV~g~~~e~~gsKl~kA~~lgI~ 73 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTAN--------------KASLCISTKKEVEKMNKKMEEVKEANIR 73 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCST--------------TCSEEECCHHHHHHCCHHHHHHHHTTCC
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccc--------------cCccEEEECCCCCCCChHHHHHHHCCCc
Confidence 45699999999998877788899999999999987744 13456766621 134688899999999
Q ss_pred eechHH----------HHHHHhcCCCCCCCcc
Q 002242 784 ILKAKW----------LTDSVAAGSTVSPAKY 805 (948)
Q Consensus 784 ILKpsW----------LkDSiqAGk~LPEekY 805 (948)
||.-+| +.+|+....+.|++.+
T Consensus 74 IvsE~~l~~~~~~~~~~~~~i~k~~i~~w~~~ 105 (113)
T 2cok_A 74 VVSEDFLQDVSASTKSLQELFLAHILSSWGAE 105 (113)
T ss_dssp EECTHHHHHHHSCCSCHHHHHHHTBCSSCCCS
T ss_pred EEeHHHHHHHHhhchhHHHHHHHhcCCCCCCC
Confidence 999999 5566666777777764
No 60
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=97.71 E-value=8.2e-05 Score=81.17 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=64.0
Q ss_pred cCCCCCCCeEEEEecCC-----chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhc-
Q 002242 827 NHKYIFGRVGIMLHGKP-----SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEK- 900 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~-----sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~- 900 (948)
....+|.||.|++.|.- .-+..+.+++++.||++...+ +..++++|+...... -...|++.
T Consensus 278 lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~v----------s~~vTHLVa~~~~t~---K~~~A~~~~ 344 (372)
T 3ef0_A 278 MKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF----------SVPPTHLIAAKIRTE---KVKKAVSMG 344 (372)
T ss_dssp HHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSS----------SSCCSEEEECSCCCH---HHHHHHHSS
T ss_pred HHhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcC----------CCCceEEEEcCCCch---HHHHHHhcC
Confidence 33579999999999953 124689999999999999654 234678888765432 22356666
Q ss_pred CceeechHHHHHHHHhCCccCC
Q 002242 901 KIAMVPASWIIKSLHIGMLLPQ 922 (948)
Q Consensus 901 gIP~VpsEWIIESImsgkLLPf 922 (948)
||++|+.+||.+|+..++.+|-
T Consensus 345 ~I~IV~~~Wl~~c~~~~~~vdE 366 (372)
T 3ef0_A 345 NIKVVKLNWLTESLSQWKRLPE 366 (372)
T ss_dssp SCCEEEHHHHHHHHHTTSCCCG
T ss_pred CCEEEcHHHHHHHHHhCCcCCh
Confidence 8999999999999999999874
No 61
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=97.67 E-value=4.3e-05 Score=77.23 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=69.1
Q ss_pred ccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccC---CCCCCcEEECCCCcchHHHHHHhhcC
Q 002242 705 KRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRS---HSQQLPVVICPKKLKTTKFLYGCAVN 781 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef---~st~~~VVI~~k~~RT~KfL~GIAsG 781 (948)
+..+|.|+.|++|+-.....+++..||+..||+|+...|.+ +++.+- ......+||+.+. -+..+..+...|
T Consensus 119 ~~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~----~~~~~~~~~~~~~~~ivis~~~-d~~~~~~~~~~~ 193 (219)
T 3sqd_A 119 VSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSF----RKLMEHKQNSSLSEIILISCEN-DLHLCREYFARG 193 (219)
T ss_dssp HSCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCH----HHHHHHHHCTTSCEEEEEECGG-GGGGGHHHHHTT
T ss_pred cccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCch----HHhhhhhcccCCCCEEEEeccc-HHHHHHHHHHCC
Confidence 57899999999999766557789999999999999887622 111000 0112345664432 334455566789
Q ss_pred cceechHHHHHHHhcCCCCCCCcccc
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMI 807 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI 807 (948)
++|++++||-+|+-..++ +++.|.+
T Consensus 194 ~~v~s~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 194 IDVHNAEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp CCCEETHHHHHHHHHTCC-CTTTSBC
T ss_pred CcEEeHHHHHHHHHheee-cchhccc
Confidence 999999999999997665 8888865
No 62
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=7e-05 Score=69.55 Aligned_cols=84 Identities=18% Similarity=0.276 Sum_probs=62.2
Q ss_pred ccccccceEEEEcCCCc-----hhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhh
Q 002242 705 KRLIFQGIKFLLTGFSS-----QKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCA 779 (948)
Q Consensus 705 Ks~IF~GLvFLLTGfss-----~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIA 779 (948)
-.++|+|+.|.+---++ ....+|++||+++||.|+...|.-. .....||++ .--|
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s-----------~~~~yVVSp-yN~t-------- 67 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRES-----------KENVFIVSP-YNHT-------- 67 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCC-----------SSCCCCBCT-TCCC--------
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccc-----------cCCeEEEeC-CCCC--------
Confidence 35789999999932122 1234599999999999999977111 112345555 3333
Q ss_pred cCcceechHHHHHHHhcCCCCCCCcccccC
Q 002242 780 VNAFILKAKWLTDSVAAGSTVSPAKYMILS 809 (948)
Q Consensus 780 sGaWILKpsWLkDSiqAGk~LPEekYeI~S 809 (948)
+.|.|+|.||++|++.+..|+-+.|+++-
T Consensus 68 -~LpTVtpTYI~aC~~~nTLLnv~~YLvp~ 96 (106)
T 2l42_A 68 -NLPTVTPTYIKACCQSNSLLNMENYLVPY 96 (106)
T ss_dssp -SSSBCCTTHHHHHHHSTTSCGGGGCCBCS
T ss_pred -CCccccHHHHHHHHhcCceecccccccCc
Confidence 89999999999999999999999999874
No 63
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.55 E-value=5.8e-05 Score=77.12 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=67.6
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEE-CCCC---cchHHHHHHhhcC
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVI-CPKK---LKTTKFLYGCAVN 781 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI-~~k~---~RT~KfL~GIAsG 781 (948)
.++|.|+.|++++- ....+.++.||+..||+|+...|++. ..+ .++ .++ ..+. -...+|......|
T Consensus 133 ~~lF~g~~v~l~~~-~~~~~~l~~ii~agGg~vl~~~~~~~-----~~~--~t~--~~vd~~~~~~~~~~~~~~~~~~~~ 202 (235)
T 3al2_A 133 EGAFSGWKVILHVD-QSREAGFKRLLQSGGAKVLPGHSVPL-----FKE--ATH--LFSDLNKLKPDDSGVNIAEAAAQN 202 (235)
T ss_dssp SSTTTTCEEEEECC-HHHHHHHHHHHHHTTCEECSSCCGGG-----GGG--CSE--EEECC--------CCCHHHHHHTT
T ss_pred CCCCCCcEEEEecC-CCcHHHHHHHHHcCCcEEecCCCCCc-----ccc--Cce--EEEecccCCccchhHHHHHHHHcC
Confidence 58999999999884 33445699999999999996654211 111 222 222 1111 1124677778899
Q ss_pred cceechHHHHHHHhcCCCCCCCcccccC
Q 002242 782 AFILKAKWLTDSVAAGSTVSPAKYMILS 809 (948)
Q Consensus 782 aWILKpsWLkDSiqAGk~LPEekYeI~S 809 (948)
++|++++||-|++-.....++++|+|+.
T Consensus 203 i~~v~~ewlld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 203 VYCLRTEYIADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp CEEEETHHHHHHHHCSSCCCHHHHBCGG
T ss_pred CcEEcHHHHHHHHhcCCCCChhheEccc
Confidence 9999999999999999999999999875
No 64
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.51 E-value=0.00014 Score=65.45 Aligned_cols=75 Identities=9% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCCCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 828 HKYIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 828 ~~~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
+.+.|.|..|.|.|.- .-++++..+|++.||+|..++. ..++|+|+.+... + -...|+++|||+++
T Consensus 4 ~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVs----------kkt~~LV~g~~~g-s--K~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVS----------RKTSYLVVGENPG-S--KLEKARALGVPTLT 70 (92)
T ss_dssp CCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCS----------SSCCCBEECSSSS-T--THHHHHCSSSCCEE
T ss_pred CCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCccc----------CCeeEEEeCCCCC-h--HHHHHHHcCCcEEe
Confidence 3467999999999942 2678999999999999996553 3467999886552 2 33468999999999
Q ss_pred hHHHHHHHH
Q 002242 907 ASWIIKSLH 915 (948)
Q Consensus 907 sEWIIESIm 915 (948)
-+||++.|-
T Consensus 71 E~~f~~~l~ 79 (92)
T 1l7b_A 71 EEELYRLLE 79 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999984
No 65
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.51 E-value=0.00027 Score=65.47 Aligned_cols=77 Identities=9% Similarity=0.056 Sum_probs=60.8
Q ss_pred CCCCCCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 829 KYIFGRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 829 ~~LFdG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
...|.|..|.|.|.- --++++..+|+..||+|..++. ..++|+|+.+....+ -...|+++|||+++
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVS----------kkTd~LV~G~~~g~s--K~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVS----------KKTNYLVMGRDSGQS--KSDKAAALGTKIID 97 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCC----------TTCCEEEECBCCCHH--HHHHHHHHTCEEEC
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCccc----------CCceEEEECCCCChH--HHHHHHHcCCeEEe
Confidence 457999999999954 2478999999999999996653 346899988754212 23468889999999
Q ss_pred hHHHHHHHHhC
Q 002242 907 ASWIIKSLHIG 917 (948)
Q Consensus 907 sEWIIESImsg 917 (948)
-+||++.|-.+
T Consensus 98 E~~f~~ll~~~ 108 (109)
T 2k6g_A 98 EDGLLNLIRNL 108 (109)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998654
No 66
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=97.46 E-value=0.00025 Score=79.32 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=62.4
Q ss_pred CCCCCCeEEEEecCC-----chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhc-Cc
Q 002242 829 KYIFGRVGIMLHGKP-----SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEK-KI 902 (948)
Q Consensus 829 ~~LFdG~rfyL~GK~-----sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~-gI 902 (948)
.++|.||.|++.|.- ..+..+.++++..||++...+ ...++|+|+...... -...|.+. +|
T Consensus 350 ~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~v----------s~~vTHLVa~~~~t~---K~~~A~~~g~I 416 (442)
T 3ef1_A 350 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDF----------SVPPTHLIAAKIRTE---KVKKAVSMGNI 416 (442)
T ss_dssp HTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSS----------SSCCSEEEECSCCCH---HHHHHHHHSSS
T ss_pred hcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCC----------CCCceEEEeCCCCCH---HHHHHHhcCCC
Confidence 369999999999943 134689999999999998644 234678888765432 22345555 79
Q ss_pred eeechHHHHHHHHhCCccCC
Q 002242 903 AMVPASWIIKSLHIGMLLPQ 922 (948)
Q Consensus 903 P~VpsEWIIESImsgkLLPf 922 (948)
++|+.+||.+|+..++.+|-
T Consensus 417 kIVs~~WL~dcl~~~krldE 436 (442)
T 3ef1_A 417 KVVKLNWLTESLSQWKRLPE 436 (442)
T ss_dssp EEEEHHHHHHHHHHTSCCCG
T ss_pred EEEeHHHHHHHHHcCCcCCh
Confidence 99999999999999999873
No 67
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.30 E-value=0.0012 Score=71.58 Aligned_cols=184 Identities=8% Similarity=-0.015 Sum_probs=101.0
Q ss_pred ccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC---cchHHHHHHhhcCccee
Q 002242 709 FQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK---LKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 709 F~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~---~RT~KfL~GIAsGaWIL 785 (948)
+..++|..++. +.+.++.+.++.+||++. +.. .-.|+|||..+. .=|.|.|+|++.|+|||
T Consensus 113 W~P~Vl~~Ssk--e~~~~L~~~L~~LGik~v-~~~-------------~detTHlVm~krnT~KvTvK~L~ALI~gkPIV 176 (325)
T 3huf_A 113 WRSMCIQFDNP--EMLSQWASNLNLLGIPTG-LRD-------------SDATTHFVMNRQAGSSITVGTMYAFLKKTVII 176 (325)
T ss_dssp ECCCCEEESCH--HHHHHHHHHHHTTTCCEE-SSC-------------CTTCCEEECCCCCSSCCCHHHHHHHHTTCEEE
T ss_pred EeeeEEEecCH--HHHHHHHHHHHHcCCEEE-Ecc-------------CCCEEEEEEeccccccchHHHHHHHHCCCcEe
Confidence 45666666422 234559999999999998 632 124677877642 34788999999999999
Q ss_pred chHHHHHHHhcCCCCCCCcccccCcc-ccccccCCCchhhh---ccCCCCCCCeEEEEecCCchhhhHHHHHHhcCceEE
Q 002242 786 KAKWLTDSVAAGSTVSPAKYMILSSQ-ADLKRTGITEPICR---DNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVF 861 (948)
Q Consensus 786 KpsWLkDSiqAGk~LPEekYeI~S~k-s~~k~srI~~~vh~---k~~~~LFdG~rfyL~GK~sFkDkfsrIIKAGGGQVV 861 (948)
+++|+++...+.+-+=+..=.||++. ..|..+ .|.+.-. ..--+-|.|+++++.-.. .++.-||.+.|-++-
T Consensus 177 ~~~Fl~al~~~e~~~~~~~~~wPdp~dflP~i~-~g~Ep~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 252 (325)
T 3huf_A 177 DDSYLQYLSTVKESVIEDASLMPDALECFKNII-KNNDQFPSSPEDCINSLEGFSCAMLNTS---SESHHLLELLGLRIS 252 (325)
T ss_dssp CHHHHHHHTTCTTCCCCTTSSHHHHHHHHHHHH-TTCTTCCSCHHHHTTTTTTCEEEEETCC---HHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHhhhhhhhcccCCCChHHcCCCCC-CCCCCCCCCHHHhhcccCceEEEEEcCc---hhhhHHHHHhcceee
Confidence 99999998765322101011222210 111110 0111100 012478999999887533 467789999999876
Q ss_pred eehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHHHh
Q 002242 862 KTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHI 916 (948)
Q Consensus 862 ktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESIms 916 (948)
.-+ .+-+-+.+--..++++|....- +.--...---||-|++.+-+-.-|+.
T Consensus 253 ~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (325)
T 3huf_A 253 TFM-SLGDIDKELISKTDFVVLNNAV---YDSEKISFPEGIFCLTIEQLWKIIIE 303 (325)
T ss_dssp EEC-------CCSSSSCSEEEEC----------------CCCEEEHHHHHHHHHS
T ss_pred eee-ecccchHhhhccccEEEEcccc---cccccccCCcceEEEEHHHHHHHHhh
Confidence 322 1222122222335566644211 11111233348999999977766664
No 68
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.0005 Score=64.21 Aligned_cols=76 Identities=9% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCCCCCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeec
Q 002242 829 KYIFGRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVP 906 (948)
Q Consensus 829 ~~LFdG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vp 906 (948)
...|.|..|.|.|.- --++++..+|+..||+|..++. ..++|+|+.+..-.+ -...|+++||++++
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVS----------kkTd~LV~G~~~g~s--Kl~KA~~lgI~Iis 87 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVS----------KKTNYLVMGRDSGQS--KSDKAAALGTKIID 87 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCC----------SSCCEEEECSSCCSH--HHHHHHHHTCEEEE
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEecccc----------CCeeEEEecCCCChH--HHHHHHHcCCeEEe
Confidence 357999999999954 2468999999999999996553 346899988754212 23468899999999
Q ss_pred hHHHHHHHHh
Q 002242 907 ASWIIKSLHI 916 (948)
Q Consensus 907 sEWIIESIms 916 (948)
-+||++.|-.
T Consensus 88 E~~f~~ll~~ 97 (112)
T 2ebu_A 88 EDGLLNLIRT 97 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999853
No 69
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0014 Score=61.00 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=58.6
Q ss_pred cCCCCCCCeEEEEecCC------chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhc
Q 002242 827 NHKYIFGRVGIMLHGKP------SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEK 900 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~------sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~ 900 (948)
...++|.|+.|||--+. .-.++|.++|.+-||.|+..+..- +....||| ..-. .-
T Consensus 7 ~~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~-------s~~~~yVV-SpyN-----------~t 67 (106)
T 2l42_A 7 VSGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRE-------SKENVFIV-SPYN-----------HT 67 (106)
T ss_dssp CSSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCC-------CSSCCCCB-CTTC-----------CC
T ss_pred ccCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCccc-------ccCCeEEE-eCCC-----------CC
Confidence 45678999999999632 344899999999999999877522 12223444 4222 22
Q ss_pred CceeechHHHHHHHHhCCccCCC
Q 002242 901 KIAMVPASWIIKSLHIGMLLPQT 923 (948)
Q Consensus 901 gIP~VpsEWIIESImsgkLLPf~ 923 (948)
++|+|++.+|-.||-++.||++.
T Consensus 68 ~LpTVtpTYI~aC~~~nTLLnv~ 90 (106)
T 2l42_A 68 NLPTVTPTYIKACCQSNSLLNME 90 (106)
T ss_dssp SSSBCCTTHHHHHHHSTTSCGGG
T ss_pred CCccccHHHHHHHHhcCceeccc
Confidence 89999999999999999999875
No 70
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=96.18 E-value=0.0044 Score=63.07 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCCCeEEEEecCCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHH-HHhhcCceeechHH
Q 002242 831 IFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRH-CAFEKKIAMVPASW 909 (948)
Q Consensus 831 LFdG~rfyL~GK~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~-~Arr~gIP~VpsEW 909 (948)
+=.+++|++.|-..- +..++|+..||+|+... . .++++|+..-. |..+. +|-..|+|+|+.+|
T Consensus 5 ~~~~~~v~fSG~~~~--~~~~~i~~lGg~v~~~~----------~-~~THlV~~~~~---RT~K~l~Aia~g~~IVs~~W 68 (220)
T 3l41_A 5 ASKRVYITFTGYDKK--PSIDNLKKLDMSITSNP----------S-KCTHLIAPRIL---RTSKFLCSIPYGPCVVTMDW 68 (220)
T ss_dssp --CCEEEEECSCSSC--CCCGGGGGGTEEECSCT----------T-TCSEEECSSCC---CBHHHHHHGGGCCEEECHHH
T ss_pred ccceEEEEEeccCCC--CCcchHhhcceeeccCc----------h-hhhhhhhhhHh---hhcceeecCCCCCeEEEhHH
Confidence 345788999993221 23789999999988432 1 25677765432 44443 56667999999999
Q ss_pred HHHHHHhCCccCCC
Q 002242 910 IIKSLHIGMLLPQT 923 (948)
Q Consensus 910 IIESImsgkLLPf~ 923 (948)
|.+|+..|+++|..
T Consensus 69 l~~~~~~~~~l~e~ 82 (220)
T 3l41_A 69 INSCLKTHEIVDEE 82 (220)
T ss_dssp HHHHHHHTSCCCSG
T ss_pred HHhhhhhhhccccC
Confidence 99999999998854
No 71
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=93.92 E-value=0.01 Score=69.53 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred cccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 706 RLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 706 s~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
...|.|++|++||.-...|.+++++|+.+||+|.+.+. .++.+||++... .-|+--|...|++||
T Consensus 585 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVS--------------kkTd~lV~G~~~-gsKl~KA~~lgI~Ii 649 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVS--------------RKTSYLVVGENP-GSKLEKARALGVAVL 649 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCccc--------------CCeeEEEECCCC-ChHHHHHHHCCCeEE
Confidence 34699999999999877677899999999999987754 134567766442 378888888999999
Q ss_pred chHHHHHHHhcCC
Q 002242 786 KAKWLTDSVAAGS 798 (948)
Q Consensus 786 KpsWLkDSiqAGk 798 (948)
+-+|+.+.+..+.
T Consensus 650 ~E~~f~~~l~~~~ 662 (667)
T 1dgs_A 650 TEEEFWRFLKEKG 662 (667)
T ss_dssp -------------
T ss_pred eHHHHHHHHhcCC
Confidence 9999999987653
No 72
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=92.77 E-value=0.02 Score=67.11 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCCCeEEEEecCC-chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechH
Q 002242 830 YIFGRVGIMLHGKP-SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPAS 908 (948)
Q Consensus 830 ~LFdG~rfyL~GK~-sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsE 908 (948)
..|.|..|.|.|+- .-++++..+|+..||+|..++. ..++|+|+.+... + -...|+++|||+++-+
T Consensus 586 ~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVS----------kkTd~lV~G~~~g-s--Kl~KA~~lgI~Ii~E~ 652 (667)
T 1dgs_A 586 DLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVS----------RKTSYLVVGENPG-S--KLEKARALGVAVLTEE 652 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCccc----------CCeeEEEECCCCC-h--HHHHHHHCCCeEEeHH
Confidence 46999999999943 2568999999999999997663 2367999886542 2 3357889999999999
Q ss_pred HHHHHHHhCCcc
Q 002242 909 WIIKSLHIGMLL 920 (948)
Q Consensus 909 WIIESImsgkLL 920 (948)
||.+.|-.+.+.
T Consensus 653 ~f~~~l~~~~~p 664 (667)
T 1dgs_A 653 EFWRFLKEKGAP 664 (667)
T ss_dssp ------------
T ss_pred HHHHHHhcCCCC
Confidence 999999766543
No 73
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=92.21 E-value=0.026 Score=66.20 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred ccccceEEEEcCCCch-hHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCCcchHHHHHHhhcCccee
Q 002242 707 LIFQGIKFLLTGFSSQ-KEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFIL 785 (948)
Q Consensus 707 ~IF~GLvFLLTGfss~-keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~~RT~KfL~GIAsGaWIL 785 (948)
..|.|++|++||.-+. .+.+++++|+.+||+|.+.+. .++.+||++... .-|+--|...|++||
T Consensus 596 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVS--------------kkTd~lV~G~~~-gsKl~KA~~lgI~Ii 660 (671)
T 2owo_A 596 SPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVS--------------KKTDLVIAGEAA-GSKLAKAQELGIEVI 660 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCccc--------------CceeEEEECCCC-ChHHHHHHHCCCcEE
Confidence 4599999999999875 677899999999999987754 134567766542 378888888899999
Q ss_pred chHHHHHHHh
Q 002242 786 KAKWLTDSVA 795 (948)
Q Consensus 786 KpsWLkDSiq 795 (948)
+-+|+.+.+.
T Consensus 661 ~E~~f~~~l~ 670 (671)
T 2owo_A 661 DEAEMLRLLG 670 (671)
T ss_dssp ----------
T ss_pred cHHHHHHHhc
Confidence 9999887763
No 74
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=90.26 E-value=0.053 Score=63.63 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCCeEEEEecCCc--hhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeech
Q 002242 830 YIFGRVGIMLHGKPS--FCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPA 907 (948)
Q Consensus 830 ~LFdG~rfyL~GK~s--FkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~Vps 907 (948)
..|.|..|.|.|+-. -++++..+|+..||+|..++.. .++|+|+.+... + -...|+++|||+++-
T Consensus 596 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSk----------kTd~lV~G~~~g-s--Kl~KA~~lgI~Ii~E 662 (671)
T 2owo_A 596 SPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSK----------KTDLVIAGEAAG-S--KLAKAQELGIEVIDE 662 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccC----------ceeEEEECCCCC-h--HHHHHHHCCCcEEcH
Confidence 469999999999543 4689999999999999976632 367999886542 2 335789999999999
Q ss_pred HHHHHHH
Q 002242 908 SWIIKSL 914 (948)
Q Consensus 908 EWIIESI 914 (948)
+||++.|
T Consensus 663 ~~f~~~l 669 (671)
T 2owo_A 663 AEMLRLL 669 (671)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 9999876
No 75
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.05 E-value=6.3 Score=40.32 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=65.9
Q ss_pred ccceEEEEcCCCch---hHHHHHHHHHHhCCEeecCCCCCCCcCCccccCCCCCCcEEECCCC---cchHHHHHHhhcCc
Q 002242 709 FQGIKFLLTGFSSQ---KEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKK---LKTTKFLYGCAVNA 782 (948)
Q Consensus 709 F~GLvFLLTGfss~---keKELtkLIe~LGG~V~sDip~pldk~kR~aef~st~~~VVI~~k~---~RT~KfL~GIAsGa 782 (948)
..|+.++|--+..- .+-+|.+-..-.|..-+.. --+..++|.+|... ...+-++.|-..++
T Consensus 162 msgitvclgpldplkeisdlqisqclshigarplqr-------------hvaidtthfvcndldneesneelirakhnni 228 (290)
T 4gns_A 162 MSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQR-------------HVAIDTTHFVCNDLDNEESNEELIRAKHNNI 228 (290)
T ss_dssp CTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBS-------------SCCTTCCEEECSCCTTCTTCHHHHHHHHTTC
T ss_pred ccCceEEecCCChhhhhhhccHHHHHHHhCCchhhh-------------eeeeecceeeecCCCcccchHHHHhhhccCC
Confidence 45666666444332 2345777666665543322 12445678888765 58899999999999
Q ss_pred ceechHHHHHHHhcCCCCCCCcccccCcccccc
Q 002242 783 FILKAKWLTDSVAAGSTVSPAKYMILSSQADLK 815 (948)
Q Consensus 783 WILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k 815 (948)
||++|+||++|--..+++--..|-+.+.++.++
T Consensus 229 pivrpewvracevekrivgvrgfyldadqsilk 261 (290)
T 4gns_A 229 PIVRPEWVRACEVEKRIVGVRGFYLDADQSILK 261 (290)
T ss_dssp CEECTHHHHHHHHTTSCCCSGGGBTTSCGGGGG
T ss_pred CccCHHHHHHHhhhheeeeeeeEEEcccHHHHh
Confidence 999999999999999999888877766555543
No 76
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=43.51 E-value=47 Score=34.08 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=57.8
Q ss_pred CCCCeEEEEecCCchhh----hHHHHHHhcCceEEeehhhhhccccccccceeEEEecCC-cchhhhhHHHHhhcCceee
Q 002242 831 IFGRVGIMLHGKPSFCT----KFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENE-RRVSRHLRHCAFEKKIAMV 905 (948)
Q Consensus 831 LFdG~rfyL~GK~sFkD----kfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedE-Ss~Sr~Lk~~Arr~gIP~V 905 (948)
=..|..++|..-.+.++ ++..-+.|-||.-+ ++|+--+ +++.|..|- ...+.+....|+-.+||+|
T Consensus 161 dmsgitvclgpldplkeisdlqisqclshigarpl---qrhvaid------tthfvcndldneesneelirakhnnipiv 231 (290)
T 4gns_A 161 DMSGITVCLGPLDPLKEISDLQISQCLSHIGARPL---QRHVAID------TTHFVCNDLDNEESNEELIRAKHNNIPIV 231 (290)
T ss_dssp CCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCC---BSSCCTT------CCEEECSCCTTCTTCHHHHHHHHTTCCEE
T ss_pred cccCceEEecCCChhhhhhhccHHHHHHHhCCchh---hheeeee------cceeeecCCCcccchHHHHhhhccCCCcc
Confidence 35678888877554443 67888999999866 6665322 244543332 2235666667888899999
Q ss_pred chHHHHHHHHhCCccC
Q 002242 906 PASWIIKSLHIGMLLP 921 (948)
Q Consensus 906 psEWIIESImsgkLLP 921 (948)
..+|+-.|-...+.+-
T Consensus 232 rpewvracevekrivg 247 (290)
T 4gns_A 232 RPEWVRACEVEKRIVG 247 (290)
T ss_dssp CTHHHHHHHHTTSCCC
T ss_pred CHHHHHHHhhhheeee
Confidence 9999999999988876
No 77
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=32.92 E-value=42 Score=32.14 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=29.1
Q ss_pred cCCCCCCCeEEEEecCCchhhhHHHHHHhcCceEEe
Q 002242 827 NHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFK 862 (948)
Q Consensus 827 ~~~~LFdG~rfyL~GK~sFkDkfsrIIKAGGGQVVk 862 (948)
....||.|..|++.-.... .+++.+|..|||.+..
T Consensus 9 ~~~~LF~GKtFvFLn~KQ~-kkl~~aV~~~GG~~~l 43 (118)
T 2k2w_A 9 KRKSIFKDKVFLFLNAKQY-KKLSPAVLFGGGKTDL 43 (118)
T ss_dssp CCSCSSTTCEEEESCSSTH-HHHHHHHHHTTCEEEC
T ss_pred hHHhhccCCEEEEeCHHHH-HHHHHHHHhcCceEEe
Confidence 4568999999999986554 7899999999999883
No 78
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=30.15 E-value=17 Score=27.15 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhhhhcccccC
Q 002242 140 TIVLEAALQVKQARLENQEDT 160 (948)
Q Consensus 140 ~a~lEaAL~vKqARle~~E~~ 160 (948)
-|+||.-||.-+..||.+||+
T Consensus 10 caalesklqalekklealehg 30 (31)
T 3ljm_A 10 CAALESKLQALEKKLEALEHG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 478999999999999999986
Done!