Query 002245
Match_columns 947
No_of_seqs 402 out of 1928
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:29:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1orn_A Endonuclease III; DNA r 100.0 1.4E-41 4.9E-46 352.0 21.2 209 345-609 6-214 (226)
2 2abk_A Endonuclease III; DNA-r 100.0 1.8E-41 6.1E-46 347.0 16.3 208 344-608 1-208 (211)
3 1kea_A Possible G-T mismatches 100.0 4.1E-39 1.4E-43 332.2 18.2 213 343-608 3-218 (221)
4 1kg2_A A/G-specific adenine gl 100.0 1.3E-38 4.4E-43 329.0 20.7 195 378-622 26-224 (225)
5 3n5n_X A/G-specific adenine DN 100.0 1.2E-38 4.1E-43 341.3 17.9 213 347-609 13-234 (287)
6 3fsp_A A/G-specific adenine gl 100.0 4.2E-38 1.4E-42 345.2 17.8 218 351-625 15-236 (369)
7 1pu6_A 3-methyladenine DNA gly 100.0 3.8E-32 1.3E-36 280.2 14.0 198 349-585 4-212 (218)
8 2h56_A DNA-3-methyladenine gly 99.9 3.2E-25 1.1E-29 230.7 14.4 169 351-552 31-201 (233)
9 3fhf_A Mjogg, N-glycosylase/DN 99.9 8.2E-26 2.8E-30 233.4 9.5 147 381-589 43-196 (214)
10 3fhg_A Mjogg, N-glycosylase/DN 99.9 1.7E-25 6E-30 228.8 9.4 156 380-589 31-189 (207)
11 4b21_A Probable DNA-3-methylad 99.9 2.1E-24 7.1E-29 225.0 14.5 164 380-563 58-224 (232)
12 2yg9_A DNA-3-methyladenine gly 99.9 2.3E-24 8E-29 223.3 13.3 171 351-562 40-213 (225)
13 3n0u_A Probable N-glycosylase/ 99.9 1.4E-24 4.6E-29 224.9 5.8 167 347-549 18-194 (219)
14 3s6i_A DNA-3-methyladenine gly 99.9 6E-23 2.1E-27 213.3 13.3 161 381-562 49-212 (228)
15 3i0w_A 8-oxoguanine-DNA-glycos 99.9 1.1E-22 3.7E-27 217.9 15.0 173 380-585 113-287 (290)
16 2xhi_A N-glycosylase/DNA lyase 99.9 4.4E-23 1.5E-27 227.1 12.1 162 351-535 133-299 (360)
17 4e9f_A Methyl-CPG-binding doma 99.9 6.2E-23 2.1E-27 203.7 8.4 115 380-530 29-145 (161)
18 1mpg_A ALKA, 3-methyladenine D 99.8 1.3E-20 4.6E-25 200.4 18.5 162 380-562 111-273 (282)
19 2jhn_A ALKA, 3-methyladenine D 99.8 6.7E-21 2.3E-25 204.2 13.8 163 380-561 116-282 (295)
20 1x2i_A HEF helicase/nuclease; 84.1 1 3.4E-05 37.9 4.3 39 466-510 27-65 (75)
21 4glx_A DNA ligase; inhibitor, 83.4 1.8 6E-05 51.1 7.4 82 433-530 470-576 (586)
22 1kft_A UVRC, excinuclease ABC 82.0 1.1 3.8E-05 38.7 3.8 36 469-510 40-75 (78)
23 3vdp_A Recombination protein R 82.0 0.89 3.1E-05 47.3 3.8 28 486-513 21-48 (212)
24 2a1j_B DNA excision repair pro 81.8 1.4 4.8E-05 39.1 4.6 39 467-511 46-84 (91)
25 1z00_A DNA excision repair pro 81.6 1.4 4.9E-05 38.8 4.5 40 466-511 32-71 (89)
26 1vdd_A Recombination protein R 79.5 1.2 4.1E-05 46.8 3.8 27 487-513 8-34 (228)
27 2owo_A DNA ligase; protein-DNA 75.7 4.5 0.00015 48.4 7.6 82 433-530 470-576 (671)
28 2jg6_A DNA-3-methyladenine gly 74.9 5.7 0.0002 40.6 7.1 83 427-509 58-167 (186)
29 2ofk_A 3-methyladenine DNA gly 74.2 4.8 0.00016 41.1 6.3 49 428-476 59-112 (183)
30 1s5l_U Photosystem II 12 kDa e 73.0 1 3.6E-05 43.8 1.2 51 436-508 56-106 (134)
31 2fmp_A DNA polymerase beta; nu 72.0 7.5 0.00026 42.5 7.7 58 442-510 19-76 (335)
32 2ztd_A Holliday junction ATP-d 70.4 2.6 8.8E-05 43.8 3.4 25 490-514 122-146 (212)
33 2ztd_A Holliday junction ATP-d 69.2 1.5 5.2E-05 45.4 1.4 44 488-532 85-131 (212)
34 1dgs_A DNA ligase; AMP complex 69.1 4.1 0.00014 48.7 5.2 52 466-530 520-571 (667)
35 2duy_A Competence protein come 69.0 2.4 8.1E-05 36.3 2.4 21 490-510 26-46 (75)
36 2ihm_A POL MU, DNA polymerase 67.2 6.3 0.00022 43.6 5.9 56 443-510 25-80 (360)
37 2bcq_A DNA polymerase lambda; 66.9 9.1 0.00031 41.9 7.0 56 443-510 21-76 (335)
38 3arc_U Photosystem II 12 kDa e 66.6 1.7 5.8E-05 40.1 1.0 53 436-510 19-71 (97)
39 2edu_A Kinesin-like protein KI 66.1 8.4 0.00029 34.7 5.5 59 434-510 31-89 (98)
40 1jms_A Terminal deoxynucleotid 64.9 10 0.00034 42.4 7.0 60 443-514 44-104 (381)
41 2duy_A Competence protein come 64.4 1.9 6.5E-05 36.9 0.8 53 436-510 20-72 (75)
42 2bgw_A XPF endonuclease; hydro 60.5 8.6 0.0003 39.0 5.0 38 467-510 176-213 (219)
43 1z00_B DNA repair endonuclease 59.4 6.4 0.00022 35.2 3.4 24 487-510 14-37 (84)
44 1ixr_A Holliday junction DNA h 59.3 18 0.00061 36.8 7.0 25 490-514 106-130 (191)
45 2kp7_A Crossover junction endo 58.6 22 0.00075 32.0 6.7 40 458-508 36-75 (87)
46 1cuk_A RUVA protein; DNA repai 58.2 13 0.00045 38.1 5.9 21 490-510 107-127 (203)
47 2a1j_A DNA repair endonuclease 57.6 6.3 0.00021 33.2 2.8 21 490-510 3-23 (63)
48 1ixr_A Holliday junction DNA h 56.8 6.4 0.00022 40.1 3.3 22 489-510 70-91 (191)
49 2ihm_A POL MU, DNA polymerase 56.0 9.1 0.00031 42.4 4.6 51 453-508 68-119 (360)
50 2fmp_A DNA polymerase beta; nu 54.4 9.2 0.00032 41.9 4.3 51 453-508 64-115 (335)
51 1xqo_A 8-oxoguanine DNA glycos 53.8 27 0.00091 37.4 7.4 123 443-586 86-228 (256)
52 2edu_A Kinesin-like protein KI 53.6 7.8 0.00027 34.9 3.0 21 490-510 39-59 (98)
53 1cuk_A RUVA protein; DNA repai 52.4 8.4 0.00029 39.5 3.4 23 490-513 72-94 (203)
54 4gfj_A Topoisomerase V; helix- 49.3 19 0.00066 41.1 5.8 72 431-508 538-639 (685)
55 2i5h_A Hypothetical protein AF 47.8 7.3 0.00025 40.4 2.0 21 490-510 131-151 (205)
56 1z00_A DNA excision repair pro 47.6 12 0.0004 32.9 3.1 24 489-513 17-40 (89)
57 4gfj_A Topoisomerase V; helix- 47.5 27 0.00092 40.0 6.5 81 430-510 395-487 (685)
58 1jms_A Terminal deoxynucleotid 47.0 15 0.00052 41.0 4.6 51 453-508 87-138 (381)
59 3sgi_A DNA ligase; HET: DNA AM 46.4 4.2 0.00014 48.2 0.0 39 466-510 542-580 (615)
60 1kft_A UVRC, excinuclease ABC 44.4 7.4 0.00025 33.4 1.3 23 490-513 23-45 (78)
61 2a1j_B DNA excision repair pro 43.9 14 0.00048 32.7 3.0 25 489-514 30-54 (91)
62 1wcn_A Transcription elongatio 43.2 24 0.00084 30.4 4.3 36 430-468 27-62 (70)
63 1x2i_A HEF helicase/nuclease; 42.6 13 0.00046 30.9 2.5 25 489-514 12-36 (75)
64 2bcq_A DNA polymerase lambda; 41.8 23 0.00079 38.8 4.9 49 453-508 64-113 (335)
65 3arc_U Photosystem II 12 kDa e 41.6 8.4 0.00029 35.5 1.2 20 490-509 25-44 (97)
66 1vq8_Y 50S ribosomal protein L 41.3 5.6 0.00019 41.9 0.0 44 490-533 14-57 (241)
67 3c1y_A DNA integrity scanning 40.6 19 0.00066 40.4 4.1 38 465-508 327-364 (377)
68 1s5l_U Photosystem II 12 kDa e 39.1 10 0.00035 37.0 1.4 19 490-508 62-80 (134)
69 3bzc_A TEX; helix-turn-helix, 30.3 44 0.0015 40.8 5.2 75 440-532 505-589 (785)
70 2a1j_A DNA repair endonuclease 30.1 90 0.0031 26.0 5.6 31 431-466 24-55 (63)
71 2bgw_A XPF endonuclease; hydro 28.7 59 0.002 32.8 5.1 25 489-514 160-184 (219)
72 1xg7_A Hypothetical protein; s 27.9 1E+02 0.0035 32.9 6.8 117 443-585 89-228 (250)
73 1u9l_A Transcription elongatio 27.5 60 0.002 28.1 4.2 40 430-472 26-65 (70)
74 2w9m_A Polymerase X; SAXS, DNA 27.3 27 0.00094 40.7 2.7 22 489-510 95-116 (578)
75 3r8n_M 30S ribosomal protein S 27.2 36 0.0012 32.2 3.0 22 489-510 14-35 (114)
76 3j20_O 30S ribosomal protein S 25.7 41 0.0014 33.2 3.2 22 489-510 21-42 (148)
77 3b0x_A DNA polymerase beta fam 24.8 35 0.0012 39.6 3.0 21 488-508 90-110 (575)
78 1b22_A DNA repair protein RAD5 23.9 1.5E+02 0.005 27.9 6.5 31 477-511 48-78 (114)
79 3u5c_S 40S ribosomal protein S 23.7 32 0.0011 33.9 2.0 22 489-510 28-49 (146)
80 3iz6_M 40S ribosomal protein S 23.6 44 0.0015 33.2 2.9 28 483-510 19-47 (152)
81 2w9m_A Polymerase X; SAXS, DNA 23.4 30 0.001 40.3 2.1 55 442-507 93-147 (578)
82 2csb_A Topoisomerase V, TOP61; 23.1 1.7E+02 0.0057 31.8 7.4 108 391-515 314-434 (519)
83 2xzm_M RPS18E; ribosome, trans 21.2 52 0.0018 32.8 2.9 22 489-510 28-49 (155)
84 3c65_A Uvrabc system protein C 21.0 20 0.0007 37.5 0.0 19 490-509 204-222 (226)
85 1lva_A Selenocysteine-specific 20.8 2.6E+02 0.0088 29.0 8.3 86 403-510 138-239 (258)
86 1b22_A DNA repair protein RAD5 20.6 29 0.001 32.7 1.0 39 430-471 45-83 (114)
87 1wcn_A Transcription elongatio 20.5 1.3E+02 0.0045 25.8 5.0 34 474-511 27-60 (70)
88 3e1s_A Exodeoxyribonuclease V, 20.2 28 0.00096 40.5 0.9 55 442-508 7-61 (574)
89 1z00_B DNA repair endonuclease 20.0 1.8E+02 0.006 25.9 5.8 32 431-466 38-69 (84)
No 1
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=1.4e-41 Score=351.96 Aligned_cols=209 Identities=20% Similarity=0.327 Sum_probs=186.9
Q ss_pred cHHHHHHHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCcccc
Q 002245 345 LAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQER 424 (947)
Q Consensus 345 ~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er 424 (947)
.+++..+|+++|.+.||.+...+.+ .++|+.||++||++|++++.+++ .|.+|+..
T Consensus 6 ~~~~~~~i~~~L~~~y~~~~~~l~~----------~~pfe~Lv~~IlsQqts~~~v~~----~~~~l~~~---------- 61 (226)
T 1orn_A 6 TKQQIRYCLDEMAKMFPDAHCELVH----------RNPFELLIAVVLSAQCTDALVNK----VTKRLFEK---------- 61 (226)
T ss_dssp CHHHHHHHHHHHHHHCTTCCCCSCC----------SSHHHHHHHHHHHTTSCHHHHHH----HHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHHcCccCCCCCC----------CCHHHHHHHHHHhCCCcHHHHHH----HHHHHHHH----------
Confidence 3477889999999999987655544 36899999999999999988874 35666533
Q ss_pred ccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHH
Q 002245 425 SRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSV 504 (947)
Q Consensus 425 ~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTA 504 (947)
+|||++|+++++++|+++|+++|||++||++|+++|+.++++|+| ++|.. +++|++|||||+|||
T Consensus 62 ------fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~TA 126 (226)
T 1orn_A 62 ------YRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG-------EVPRD--RDELMKLPGVGRKTA 126 (226)
T ss_dssp ------CCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT-------SCCSC--HHHHTTSTTCCHHHH
T ss_pred ------CCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC-------CcHHH--HHHHHHCCCccHHHH
Confidence 899999999999999999999999999999999999999999988 67765 999999999999999
Q ss_pred HHHHHHhcCCceeecchHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHhH
Q 002245 505 ECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGK 584 (947)
Q Consensus 505 d~ILlfafgrpafPVDTHV~RVl~RLGlv~~k~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fGR 584 (947)
++||+|+||+|+||||+||.|++.|+|+++...+++++++.+++++|. ..+.++|++||+|||
T Consensus 127 ~~il~~a~g~~~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~-----------------~~~~~~~~~lv~~G~ 189 (226)
T 1orn_A 127 NVVVSVAFGVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPK-----------------EEWSITHHRMIFFGR 189 (226)
T ss_dssp HHHHHHHHCCCCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCG-----------------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCceeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCh-----------------hhHHHHHHHHHHHHH
Confidence 999999999999999999999999999987557899999999998883 346799999999999
Q ss_pred hhcccCCCCCCCCCChhhchhhhhh
Q 002245 585 VFCTKSKPNCNACPMRGECRHFASA 609 (947)
Q Consensus 585 ~ICtarkPkC~~CPLrdlC~yy~k~ 609 (947)
.+|++++|+|+.|||++.|+++.+.
T Consensus 190 ~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 190 YHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp HTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred HHcCCCCCCCCCCCChhhhhhHhhc
Confidence 9999999999999999999998764
No 2
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=1.8e-41 Score=347.02 Aligned_cols=208 Identities=21% Similarity=0.271 Sum_probs=182.4
Q ss_pred CcHHHHHHHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCccc
Q 002245 344 MLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE 423 (947)
Q Consensus 344 ~~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~e 423 (947)
|.+++..+|+++|.+.||.+...+.+ .++|+.||++|||+|++++.++++ |.+|+
T Consensus 1 ~~~~~~~~i~~~L~~~~~~~~~~~~~----------~~pfe~lv~~Il~qqts~~~v~~~----~~~l~----------- 55 (211)
T 2abk_A 1 MNKAKRLEILTRLRENNPHPTTELNF----------SSPFELLIAVLLSAQATDVSVNKA----TAKLY----------- 55 (211)
T ss_dssp CCHHHHHHHHHHHHHHCSSCCCSSCC----------SSHHHHHHHHHHTTTSCHHHHHHH----HHHHT-----------
T ss_pred CChhHHHHHHHHHHHHcCCCCcCCCC----------CCHHHHHHHHHHhCCCCHHHHHHH----HHHHH-----------
Confidence 55677789999999999987644433 378999999999999999887632 34442
Q ss_pred cccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhH
Q 002245 424 RSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKS 503 (947)
Q Consensus 424 r~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KT 503 (947)
..+|||++|+++++++|+++|+++|||++||++|+++|+.+.++|+| ++|.. +++|++|||||+||
T Consensus 56 -----~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g-------~~~~~--~~~L~~l~GIG~~t 121 (211)
T 2abk_A 56 -----PVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG-------EVPED--RAALEALPGVGRKT 121 (211)
T ss_dssp -----TTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT-------SCCSC--HHHHHHSTTCCHHH
T ss_pred -----HHCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC-------CchHH--HHHHHhCCCCChHH
Confidence 13899999999999999999999999999999999999999998887 56755 99999999999999
Q ss_pred HHHHHHHhcCCceeecchHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHh
Q 002245 504 VECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFG 583 (947)
Q Consensus 504 Ad~ILlfafgrpafPVDTHV~RVl~RLGlv~~k~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fG 583 (947)
|++||+|+||+++||||+||.|++.|+||.. .++++++++.+++++|. ..+.+||++||+||
T Consensus 122 A~~il~~~~~~~~~~vD~~v~Rv~~rlgl~~-~~~~~~~~~~~~~~~p~-----------------~~~~~~~~~l~~~G 183 (211)
T 2abk_A 122 ANVVLNTAFGWPTIAVDTHIFRVCNRTQFAP-GKNVEQVEEKLLKVVPA-----------------EFKVDCHHWLILHG 183 (211)
T ss_dssp HHHHHHHHHCCCCCCCCHHHHHHHHHHCSSC-CSSHHHHHHHHHHHSCG-----------------GGTTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCcCCcCHHHHHHHHHhCCCC-CCCHHHHHHHHHHhcCh-----------------hhHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 46899999999999883 23458999999999
Q ss_pred HhhcccCCCCCCCCCChhhchhhhh
Q 002245 584 KVFCTKSKPNCNACPMRGECRHFAS 608 (947)
Q Consensus 584 R~ICtarkPkC~~CPLrdlC~yy~k 608 (947)
|.+|++++|+|+.|||++.|+|+.+
T Consensus 184 ~~~C~~~~P~C~~Cpl~~~C~~~~~ 208 (211)
T 2abk_A 184 RYTCIARKPRCGSCIIEDLCEYKEK 208 (211)
T ss_dssp HHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred HHHCCCCCCCCCCCCChhhCCCcCc
Confidence 9999999999999999999998643
No 3
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=4.1e-39 Score=332.17 Aligned_cols=213 Identities=21% Similarity=0.284 Sum_probs=174.4
Q ss_pred CCcHHHHHHHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCcc
Q 002245 343 SMLAEKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQ 422 (947)
Q Consensus 343 ~~~~~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~ 422 (947)
-|+.++...+.++|...|..-... || +....++|+.||+.||++|++++.+++ .|.+|.+.
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~--~p-----w~~~~~pfe~lv~~IlsQqts~~~~~~----~~~~l~~~-------- 63 (221)
T 1kea_A 3 DATNKKRKVFVSTILTFWNTDRRD--FP-----WRHTRDPYVILITEILLRRTTAGHVKK----IYDKFFVK-------- 63 (221)
T ss_dssp CTHHHHHHHHHHHHHHHHHHSCCC--CG-----GGGCCCHHHHHHHHHHTTTSCHHHHHH----HHHHHHHH--------
T ss_pred cccHHHHHHHHHHHHHHHHHhhhh--Cc-----CCCCCCHHHHHHHHHHHccCCHHHHHH----HHHHHHHH--------
Confidence 356666666767776654422211 11 223457899999999999999988874 34666432
Q ss_pred ccccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHh
Q 002245 423 ERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLK 502 (947)
Q Consensus 423 er~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~K 502 (947)
+|||++|+++++++|.++|+++|||++||++|+++|+.++++|+| ++|.. +++|++|||||+|
T Consensus 64 --------fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~ 126 (221)
T 1kea_A 64 --------YKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG-------RVPRN--RKAILDLPGVGKY 126 (221)
T ss_dssp --------CCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTT-------SCCSC--HHHHHTSTTCCHH
T ss_pred --------CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCC-------CchHH--HHHHHhCCCCcHH
Confidence 899999999999999999999999999999999999999999988 67765 8999999999999
Q ss_pred HHHHHHHHhcCCceeecchHHHHHHHHh-CCCCCCCC--HHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHH
Q 002245 503 SVECVRLLTLHHLAFPVDTNVGRIAVRL-GWVPLQPL--PESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQL 579 (947)
Q Consensus 503 TAd~ILlfafgrpafPVDTHV~RVl~RL-Glv~~k~t--peevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~L 579 (947)
||++||+|+||+++|+||+||+||+.|+ ||...... ..++....+.++|. ..+.+||++|
T Consensus 127 TA~~il~~~~~~~~~~vD~~v~Rv~~rl~gl~~~~~~~~~~~l~~~ae~~~P~-----------------~~~~~~~~~l 189 (221)
T 1kea_A 127 TCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPG-----------------GKCRDFNLGL 189 (221)
T ss_dssp HHHHHHHHTTCCCCCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHSCT-----------------TCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceecHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhCCh-----------------hhHHHHHHHH
Confidence 9999999999999999999999999999 99754222 22445555556662 4468999999
Q ss_pred HHHhHhhcccCCCCCCCCCChhhchhhhh
Q 002245 580 ITFGKVFCTKSKPNCNACPMRGECRHFAS 608 (947)
Q Consensus 580 I~fGR~ICtarkPkC~~CPLrdlC~yy~k 608 (947)
|+||+.+|++++|+|+.|||++.|+++..
T Consensus 190 v~~G~~~C~~~~P~C~~Cpl~~~C~~~~~ 218 (221)
T 1kea_A 190 MDFSAIICAPRKPKCEKCGMSKLCSYYEK 218 (221)
T ss_dssp HHHHHHTSCSSSCCGGGCTTTTTCHHHHT
T ss_pred HHHHHHHcCCCCCCCCCCCChhhchhhhc
Confidence 99999999999999999999999998765
No 4
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=1.3e-38 Score=329.02 Aligned_cols=195 Identities=18% Similarity=0.266 Sum_probs=163.4
Q ss_pred cccccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHH
Q 002245 378 SAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNM 457 (947)
Q Consensus 378 ~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~ 457 (947)
...++|+.||++|||+|+++..+.+ .|.+|+.. ++||++|+++++++|+++|+++||| +
T Consensus 26 ~~~~pfe~lv~~IlsQqt~~~~v~~----~~~~l~~~----------------~pt~~~la~~~~~~l~~~i~~~G~~-~ 84 (225)
T 1kg2_A 26 IDKTPYKVWLSEVMLQQTQVATVIP----YFERFMAR----------------FPTVTDLANAPLDEVLHLWTGLGYY-A 84 (225)
T ss_dssp SSCCHHHHHHHHHHHTSSCHHHHHH----HHHHHHHH----------------CSSHHHHHHSCHHHHHHHHTTSCCT-H
T ss_pred CCCCHHHHHHHHHHHCcCCHHHHHH----HHHHHHHH----------------CCCHHHHHCCCHHHHHHHHHhCChH-H
Confidence 3457899999999999999988764 34555432 8999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCCceeecchHHHHHHHHhCCCCCCC
Q 002245 458 LAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQP 537 (947)
Q Consensus 458 KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgrpafPVDTHV~RVl~RLGlv~~k~ 537 (947)
||++|+++|+.++++|+| ++|.. +++|++|||||+|||++||+|+||+++|+||+||+||+.|+|++....
T Consensus 85 kA~~l~~~a~~i~~~~~g-------~~p~~--~~~L~~lpGIG~~TA~~il~~a~~~~~~~vD~~v~Rv~~rl~~~~~~~ 155 (225)
T 1kg2_A 85 RARNLHKAAQQVATLHGG-------KFPET--FEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWP 155 (225)
T ss_dssp HHHHHHHHHHHHHHHSTT-------SCCCS--HHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCSCT
T ss_pred HHHHHHHHHHHHHHHhCC-------CchHH--HHHHhcCCCCcHHHHHHHHHHhCCCCcceeCHHHHHHHHHHcCCCCCC
Confidence 999999999999999887 67766 899999999999999999999999999999999999999996554333
Q ss_pred CHHHHHHH----HHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHhHhhcccCCCCCCCCCChhhchhhhhhcccc
Q 002245 538 LPESLQLH----LLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASA 613 (947)
Q Consensus 538 tpeevEk~----Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fGR~ICtarkPkC~~CPLrdlC~yy~k~~a~a 613 (947)
++..+++. .+.++| ...+.+||++||+||+.+|++++|+|+.|||++.|+++... .
T Consensus 156 ~~~~~~~~l~~~~~~~~p-----------------~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~---~ 215 (225)
T 1kg2_A 156 GKKEVENKLWSLSEQVTP-----------------AVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANN---S 215 (225)
T ss_dssp TSHHHHHHHHHHHHHHCC-----------------STTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHT---C
T ss_pred CccchHHHHHHHHHHHCC-----------------cccHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcC---C
Confidence 33334433 344555 24568999999999999999999999999999999998865 3
Q ss_pred ccccCCCCc
Q 002245 614 RLALPGPEE 622 (947)
Q Consensus 614 r~alP~p~~ 622 (947)
...+|.+..
T Consensus 216 ~~~~p~~~~ 224 (225)
T 1kg2_A 216 WALYPGKKP 224 (225)
T ss_dssp GGGSSCCCC
T ss_pred cccCCCCCC
Confidence 445776653
No 5
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=341.35 Aligned_cols=213 Identities=16% Similarity=0.257 Sum_probs=174.1
Q ss_pred HHHHHHHHhhhhhcCCCccccCCCCchhhhhc--------ccccccchhhhhhcccccccccccccccChHHHHHHHHhc
Q 002245 347 EKTRNLGDDISVANKLSDNKLIEPNSVEQVLS--------AHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRN 418 (947)
Q Consensus 347 ~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~--------~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~ 418 (947)
++...+.++|..+|..-...|+ ++. ..++|+.||+.||++|++++.+.+ .|.+|+..
T Consensus 13 ~~~~~~~~~ll~Wy~~~~R~lP-------WR~~~~~~~d~~~dpfe~LVs~ILsQQts~~~v~~----~~~rL~~~---- 77 (287)
T 3n5n_X 13 AEVTAFRGSLLSWYDQEKRDLP-------WRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVIN----YYTGWMQK---- 77 (287)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHH----HHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-------CcCcCccccCCCCCHHHHHHHHHHhCCCcHHHHHH----HHHHHHHH----
Confidence 4456666777777553222232 222 236799999999999999988874 35666533
Q ss_pred cCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHh-CC
Q 002245 419 SGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLS-IR 497 (947)
Q Consensus 419 glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLls-LP 497 (947)
++||++|++++.++|+++|+++|||+ ||++|+++|+.|+++|+| .+|.+ +++|++ ||
T Consensus 78 ------------fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~g-------~~p~~--~~~Ll~~Lp 135 (287)
T 3n5n_X 78 ------------WPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELGG-------HMPRT--AETLQQLLP 135 (287)
T ss_dssp ------------CCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHSTT-------CCCSS--HHHHHHHST
T ss_pred ------------CCCHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCC-------CCcHH--HHHHHHHcC
Confidence 88999999999999999999999997 999999999999999998 68877 889998 99
Q ss_pred CCcHhHHHHHHHHhcCCceeecchHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHH
Q 002245 498 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHY 577 (947)
Q Consensus 498 GVG~KTAd~ILlfafgrpafPVDTHV~RVl~RLGlv~~k~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~ 577 (947)
|||+|||++||+|+||+++|+||+||+||+.|||++....++.++++.+..+.- ..++...+.+||+
T Consensus 136 GIG~kTA~~iL~~a~g~p~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~-------------~~lp~~~~~~~h~ 202 (287)
T 3n5n_X 136 GVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQ-------------QLVDPARPGDFNQ 202 (287)
T ss_dssp TCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHH-------------HHSCSSCHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH-------------HhCCHHHHHHHHH
Confidence 999999999999999999999999999999999998755556666655422100 0123456789999
Q ss_pred HHHHHhHhhcccCCCCCCCCCChhhchhhhhh
Q 002245 578 QLITFGKVFCTKSKPNCNACPMRGECRHFASA 609 (947)
Q Consensus 578 ~LI~fGR~ICtarkPkC~~CPLrdlC~yy~k~ 609 (947)
+||+|||.||++++|+|+.|||++.|++|.+.
T Consensus 203 ~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~~ 234 (287)
T 3n5n_X 203 AAMELGATVCTPQRPLCSQCPVESLCRARQRV 234 (287)
T ss_dssp HHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHH
T ss_pred HHHHHhHHHcCCCCCCCCCCCChhhhHHHHhc
Confidence 99999999999999999999999999999875
No 6
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=4.2e-38 Score=345.21 Aligned_cols=218 Identities=21% Similarity=0.254 Sum_probs=182.0
Q ss_pred HHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCC
Q 002245 351 NLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMD 430 (947)
Q Consensus 351 ~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~ 430 (947)
+|.++|.+.|+.....|. +....++|+.||++||++|++...+.+ .|.+|+..
T Consensus 15 ~~~~~l~~w~~~~~r~lp-------w~~~~~p~~~lv~~il~qqt~~~~~~~----~~~~l~~~---------------- 67 (369)
T 3fsp_A 15 EFQRDLLDWFARERRDLP-------WRKDRDPYKVWVSEVMLQQTRVETVIP----YFEQFIDR---------------- 67 (369)
T ss_dssp HHHHHHHHHHHHHCCCCG-------GGSCCCHHHHHHHHHHTTTSCHHHHHH----HHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhCCCCC-------CCCCCChHHHHHHHHHhccCcHHHHHH----HHHHHHHH----------------
Confidence 466777777664443432 344568899999999999998776653 34555422
Q ss_pred CCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 431 ~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
++||++|++++.++|.++|+++|||+ ||++|+++|+.++++|+| ++|.. +++|++|||||+|||++||+|
T Consensus 68 ~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~g-------~~p~~--~~~L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 68 FPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYGG-------KVPDD--PDEFSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp CCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHTT-------CCCCS--HHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHcCC-------CChhH--HHHHhcCCCcCHHHHHHHHHH
Confidence 89999999999999999999999997 999999999999999998 67766 999999999999999999999
Q ss_pred hcCCceeecchHHHHHHHHhCCCCCCC----CHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHhHhh
Q 002245 511 TLHHLAFPVDTNVGRIAVRLGWVPLQP----LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVF 586 (947)
Q Consensus 511 afgrpafPVDTHV~RVl~RLGlv~~k~----tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fGR~I 586 (947)
+||+++|+||+||.||+.|+|+++... ++.++++.+++++|. ..+.+||++||+||+.+
T Consensus 138 ~~~~~~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~~~~~~~~~~p~-----------------~~~~~~~~~l~~~G~~~ 200 (369)
T 3fsp_A 138 AYGVPEPAVDGNVMRVLSRLFLVTDDIAKPSTRKRFEQIVREIMAY-----------------ENPGAFNEALIELGALV 200 (369)
T ss_dssp HHCCCCCCCCHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHCCS-----------------SSHHHHHHHHHHHHHHT
T ss_pred HCCCCcccccHHHHHHHHHHcCcccCccccchHHHHHHHHHHhCCh-----------------hhHHHHHHHHHHHHHHh
Confidence 999999999999999999999886532 345666666777662 34679999999999999
Q ss_pred cccCCCCCCCCCChhhchhhhhhccccccccCCCCcccc
Q 002245 587 CTKSKPNCNACPMRGECRHFASAFASARLALPGPEEKSI 625 (947)
Q Consensus 587 CtarkPkC~~CPLrdlC~yy~k~~a~ar~alP~p~~k~~ 625 (947)
|++++|+|+.|||++.|+++... ....+|++..|..
T Consensus 201 C~~~~P~C~~Cpl~~~C~~~~~~---~~~~~PvK~~kk~ 236 (369)
T 3fsp_A 201 CTPRRPSCLLCPVQAYCQAFAEG---VAEELPVKMKKTA 236 (369)
T ss_dssp SCSSSCCTTTCTTGGGCHHHHHT---CGGGCSCCCCCCC
T ss_pred cCCCCCCCCCCCChhhhHHHhcC---CcccCCccccccC
Confidence 99999999999999999999876 4567888876644
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.97 E-value=3.8e-32 Score=280.21 Aligned_cols=198 Identities=13% Similarity=0.151 Sum_probs=160.8
Q ss_pred HHHHHHhhhhh-cCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccC
Q 002245 349 TRNLGDDISVA-NKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRD 427 (947)
Q Consensus 349 ~~~i~~rl~~~-~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~ 427 (947)
..+|++||.+. ||.+...+-. ...++|+.||++|||+|++++.+++ .|.+|++.
T Consensus 4 ~~~i~~~L~~~~~~~~~~~~~~--------~~~dpfe~Lv~~ILsQqts~~~v~~----~~~~L~~~------------- 58 (218)
T 1pu6_A 4 SFEILKALKSLDLLKNAPAWWW--------PNALKFEALLGAVLTQNTKFEAVLK----SLENLKNA------------- 58 (218)
T ss_dssp HHHHHHHHHTTTTTTTSCTTSS--------TTTTSHHHHHHHHHTTTSCHHHHHH----HHHHHHHT-------------
T ss_pred HHHHHHHHHHccCcccCCCcCC--------CCCCHHHHHHHHHHcCCCCHHHHHH----HHHHHHHc-------------
Confidence 57899999999 9977644433 3347899999999999999988874 34555432
Q ss_pred cCCCCC------HHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcH
Q 002245 428 RMDSLD------YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGL 501 (947)
Q Consensus 428 ~~~~pT------peaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~ 501 (947)
+++| |++|++++.++|+++|+++|||++||++|+++|+.+.++|+++ +.+ +..+++++|++|||||+
T Consensus 59 --~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~~l--~~~---~~~~~~~~L~~lpGIG~ 131 (218)
T 1pu6_A 59 --FILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSF--ENF---KQEVTREWLLDQKGIGK 131 (218)
T ss_dssp --TSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSH--HHH---HHHCCHHHHHTSTTCCH
T ss_pred --cCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCCh--hhc---cchHHHHHHHcCCCcCH
Confidence 3667 9999999999999999999999999999999999999988763 333 23445999999999999
Q ss_pred hHHHHHHHHhcCCceeecchHHHHHHHHhCCCCCCCCHHHHHHHHHHhc----CchHHHHHhhhhhhhcCChhhHHHHHH
Q 002245 502 KSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELY----PVLESIQKYLWPRLCKLDQRTLYELHY 577 (947)
Q Consensus 502 KTAd~ILlfafgrpafPVDTHV~RVl~RLGlv~~k~tpeevEk~Le~ll----P~~e~Iqk~LW~rlc~ld~~~~~e~H~ 577 (947)
|||++||+|+||+|+||||+||.|++.|+||. ..+|+++++.+++.+ |.+-.+...-|. +.+.+++||+
T Consensus 132 kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~--~~~~~~~~~~l~~~~p~~lp~~~~~~~~~~~-----~~~~~~~~h~ 204 (218)
T 1pu6_A 132 ESADAILCYACAKEVMVVDKYSYLFLKKLGIE--IEDYDELQHFFEKGVQENLNSALALYENTIS-----LAQLYARFHG 204 (218)
T ss_dssp HHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCC--CCSHHHHHHHHHHHHHTTHHHHHHTTTTCSC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCccccCHHHHHHHHHcCCC--CCCHHHHHHHHHHhhhhcCcchhhhcccccc-----hHHHHHHHHH
Confidence 99999999999999999999999999999998 378999999998843 311111111121 2467899999
Q ss_pred HHHHHhHh
Q 002245 578 QLITFGKV 585 (947)
Q Consensus 578 ~LI~fGR~ 585 (947)
+||.|||.
T Consensus 205 liv~~Gk~ 212 (218)
T 1pu6_A 205 KIVEFSKQ 212 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99999997
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.92 E-value=3.2e-25 Score=230.72 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=140.7
Q ss_pred HHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCC
Q 002245 351 NLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMD 430 (947)
Q Consensus 351 ~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~ 430 (947)
.++.+|.+.+|..... ...++|+.||++||++|++++.+++ .|.+|.+.+ |. .
T Consensus 31 ~~l~~l~~~~~~~~~~-----------~~~dpfe~Lv~~IlsQqts~~~a~~----~~~rL~~~~---G~---------~ 83 (233)
T 2h56_A 31 SRLFQFIEIAGEVQLP-----------TKPNPFQSLVSSIVEQQLSIKAASA----IYGRVEQLV---GG---------A 83 (233)
T ss_dssp HHHHHHHHHHCCEEEE-----------CCSCHHHHHHHHHHHTTSCHHHHHH----HHHHHHHHH---TS---------C
T ss_pred HHHHHHHHHcCCCCCC-----------CCCCHHHHHHHHHHcCCCCHHHHHH----HHHHHHHHh---CC---------C
Confidence 4677777777754311 1237899999999999999998874 467776542 21 2
Q ss_pred CCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 431 ~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
||||++|+++++++| +++||+++||++|+++|+.+.+. .+|++.|..+|+++++++|++|||||+|||++||+|
T Consensus 84 fPtp~~la~~~~e~L----r~~G~~~~KA~~I~~~A~~i~~~--~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 84 LEKPEQLYRVSDEAL----RQAGVSKRKIEYIRHVCEHVESG--RLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp CCCTHHHHTSCHHHH----HHTTCCHHHHHHHHHHHHHHHTT--SSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHcCCHHHH----HHcCCCHHHHHHHHHHHHHHHhC--CCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 689999999999987 78999999999999999999973 358888889999999999999999999999999999
Q ss_pred hcCCc-eeecchHHHHHHHHhCCCCC-CCCHHHHHHHHHHhcCc
Q 002245 511 TLHHL-AFPVDTNVGRIAVRLGWVPL-QPLPESLQLHLLELYPV 552 (947)
Q Consensus 511 afgrp-afPVDTHV~RVl~RLGlv~~-k~tpeevEk~Le~llP~ 552 (947)
+||+| +||||+|+.|++.|+|+... ..++.+++..++.+.|.
T Consensus 158 alg~pd~~pvdd~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~P~ 201 (233)
T 2h56_A 158 SLGRLDVLSVGDVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPY 201 (233)
T ss_dssp TTCCSCCCCTTCHHHHHHHHHHHSSSCSCHHHHHHHHHGGGTTC
T ss_pred hCCCCCeeeCchHHHHHHHHHhccCCCCCCHHHHHHHHHHcCcH
Confidence 99999 99999999999999987643 35788888877777774
No 9
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.92 E-value=8.2e-26 Score=233.36 Aligned_cols=147 Identities=17% Similarity=0.198 Sum_probs=121.4
Q ss_pred ccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcC--CcHHH
Q 002245 381 KVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERG--MNNML 458 (947)
Q Consensus 381 ~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lG--fyn~K 458 (947)
++|++||++|||+|+++..++++ + .+|+ +.|+.+++++|+++|+++| ||++|
T Consensus 43 ~~fe~Lv~~ILsqqt~~~~v~~a--~--~~L~----------------------~~l~~~~~eeL~~~Ir~~G~rf~~~K 96 (214)
T 3fhf_A 43 EWFKELCFCILTANFTAEGGIRI--Q--KEIG----------------------DGFLTLPREELEEKLKNLGHRFYRKR 96 (214)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHH--H--HHHT----------------------THHHHSCHHHHHHHHHHTTCTTHHHH
T ss_pred ChHHHHHHHHHcCCCCHHHHHHH--H--HHHH----------------------HHHHCCCHHHHHHHHHHHhhHHHHHH
Confidence 78999999999999998877643 1 3331 4689999999999999999 99999
Q ss_pred HHHHHHHHH--HHHHhhCCCChhhhhcC-CchHHHHHHH-hCCCCcHhHHHHHHHHhcCCceee-cchHHHHHHHHhCCC
Q 002245 459 AERMKDFLN--RLVREHGSIDLEWLRDV-PPDKAKDYLL-SIRGLGLKSVECVRLLTLHHLAFP-VDTNVGRIAVRLGWV 533 (947)
Q Consensus 459 Ak~Ik~lA~--~Lve~yGgiDLe~L~~v-P~deareeLl-sLPGVG~KTAd~ILlfafgrpafP-VDTHV~RVl~RLGlv 533 (947)
|++|+++|+ .+.+.+++ + +..++|++|+ +|||||+|||++||+++ |.++|+ |||||.||++||||+
T Consensus 97 A~~I~~~a~~~~l~~~~~~--------~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~~~~~vVDthv~Ri~~RlG~~ 167 (214)
T 3fhf_A 97 AEYIVLARRFKNIKDIVES--------FENEKVAREFLVRNIKGIGYKEASHFLRNV-GYDDVAIIDRHILRELYENNYI 167 (214)
T ss_dssp HHHHHHHGGGCCHHHHHHH--------SSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TCCSCCCCCHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhhHHHHHhcc--------cCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CCCCcccCcHHHHHHHHHcCCC
Confidence 999999999 55544443 3 4456799999 99999999999999998 668777 999999999999998
Q ss_pred CCCCCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHhHhhccc
Q 002245 534 PLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589 (947)
Q Consensus 534 ~~k~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fGR~ICta 589 (947)
+. .+ +. ++...+.++|..|+.||+.+|.+
T Consensus 168 ~~--~~--------k~-----------------lt~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 168 DE--IP--------KT-----------------LSRRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp SS--CC--------SS-----------------CCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CC--CC--------Cc-----------------CCHHHHHHHHHHHHHHHHHHCCC
Confidence 73 11 11 23466789999999999999975
No 10
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.92 E-value=1.7e-25 Score=228.83 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=128.2
Q ss_pred cccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcC--CcHH
Q 002245 380 HKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERG--MNNM 457 (947)
Q Consensus 380 ~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lG--fyn~ 457 (947)
.++|+.||++|||+|++++.++++ |.+| +++|+.+++++|+++|+++| ||++
T Consensus 31 ~~~fe~Lv~~ILsqqts~~~~~~~----~~~L----------------------~~~l~~~~~e~l~~~ir~~G~g~~~~ 84 (207)
T 3fhg_A 31 EVWFRELTLCLLTANSSFISAYQA----LNCL----------------------GQKIYYANEEEIRNILKSCKYRFYNL 84 (207)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHH----HHHH----------------------GGGGGTCCHHHHHHHHHHTTCTTHHH
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHH----HHHH----------------------HHHHHcCCHHHHHHHHHHhccCcHHH
Confidence 478999999999999888776532 2333 25688999999999999776 9999
Q ss_pred HHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH-hcCCceeecchHHHHHHHHhCCCCCC
Q 002245 458 LAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL-TLHHLAFPVDTNVGRIAVRLGWVPLQ 536 (947)
Q Consensus 458 KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf-afgrpafPVDTHV~RVl~RLGlv~~k 536 (947)
||++|+++|+++.+.+++ |++.+...++++++++|++|||||+|||++||+| ++ .++||||+||.|++.|+|+++..
T Consensus 85 KA~~l~~~a~~~~~~~~~-~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~~~~~vD~~v~Ri~~rlg~~~~~ 162 (207)
T 3fhg_A 85 KAKYIIMAREKVYGRLKE-EIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-FDLAIIDRHIIDFMRRIGAIGET 162 (207)
T ss_dssp HHHHHHHHHHHHTTTHHH-HHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-CSSCCCCHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHhhh-hHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CCcceecHHHHHHHHHcCCCCcc
Confidence 999999999988765433 6777777788889999999999999999999998 66 78999999999999999998641
Q ss_pred CCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHhHhhccc
Q 002245 537 PLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTK 589 (947)
Q Consensus 537 ~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fGR~ICta 589 (947)
++. .++...+.++|..|+.||+.+|..
T Consensus 163 -------------~~k-------------~~~~k~y~~~~~~l~~~~~~~~~~ 189 (207)
T 3fhg_A 163 -------------NVK-------------QLSKSLYISFENILKSIASNLNMS 189 (207)
T ss_dssp -------------CCS-------------CCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------------ccc-------------cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 110 123456789999999999999854
No 11
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.91 E-value=2.1e-24 Score=224.98 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=139.8
Q ss_pred cccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHH
Q 002245 380 HKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLA 459 (947)
Q Consensus 380 ~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KA 459 (947)
.++|+.||+.||++|++++.++ +.|.+|...+ |- ...||||++|+++++++| +++||+++||
T Consensus 58 ~dpfe~Lv~~Il~Qq~s~~~a~----~~~~rL~~~~---G~-------~~~fPtpe~la~~~~e~L----r~~Gl~~~Ka 119 (232)
T 4b21_A 58 HAPYEGIIRAITSQKLSDAATN----SIINKFCTQC---SD-------NDEFPTPKQIMETDVETL----HECGFSKLKS 119 (232)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHH----HHHHHHHHHH---CS-------SSSCCCHHHHHTSCHHHH----HTTTCCHHHH
T ss_pred CCHHHHHHHHHHhCcCcHHHHH----HHHHHHHHHh---CC-------CCCCCCHHHHHcCCHHHH----HHcCCcHHHH
Confidence 3789999999999999998887 4467776552 21 123899999999999986 6799999999
Q ss_pred HHHHHHHHHHHHhhCCC-ChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCCc-eeec-chHHHHHHHHhCCCCCC
Q 002245 460 ERMKDFLNRLVREHGSI-DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPV-DTNVGRIAVRLGWVPLQ 536 (947)
Q Consensus 460 k~Ik~lA~~Lve~yGgi-DLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgrp-afPV-DTHV~RVl~RLGlv~~k 536 (947)
++|+++|+.+.+ |.+ |++.|..+|+++++++|++|||||+|||+|||+|+||+| +||| |+||+|++.|++..+..
T Consensus 120 ~~l~~~A~~~~~--g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~~ 197 (232)
T 4b21_A 120 QEIHIVAEAALN--KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSK 197 (232)
T ss_dssp HHHHHHHHHHHT--TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHh--CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCCC
Confidence 999999999997 667 899999999999999999999999999999999999998 8999 99999999999655545
Q ss_pred CCHHHHHHHHHHhcCchHHHHHhhhhh
Q 002245 537 PLPESLQLHLLELYPVLESIQKYLWPR 563 (947)
Q Consensus 537 ~tpeevEk~Le~llP~~e~Iqk~LW~r 563 (947)
.++.++++..+.+-|.-...+.+||..
T Consensus 198 ~~~~~~~~~~e~w~P~rs~A~~yLw~~ 224 (232)
T 4b21_A 198 PQTEEVEKLTKPCKPYRTIAAWYLWQI 224 (232)
T ss_dssp CCHHHHHHHTGGGTTCHHHHHHHHHTG
T ss_pred CCHHHHHHHHHHccCHHHHHHHHHHHc
Confidence 678888887777777655666777763
No 12
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.91 E-value=2.3e-24 Score=223.32 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=138.6
Q ss_pred HHHHhhhhhcCCC-ccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcC
Q 002245 351 NLGDDISVANKLS-DNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRM 429 (947)
Q Consensus 351 ~i~~rl~~~~~~p-~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~ 429 (947)
.++.++.+.+|.. .-. ...++|+.||+.||++|++++.+++ .|.+|.+. +
T Consensus 40 ~~l~~l~~~~~~~~~~~-----------~~~dpfe~Lv~~IlsQq~s~~~a~~----~~~rL~~~--------------~ 90 (225)
T 2yg9_A 40 PVLAQVTSLCGELPVLA-----------PTPDPFGRLVRSVAGQQLSVKAAQA----IYGRLEGL--------------P 90 (225)
T ss_dssp HHHHHHHHHHCCCCCCC-----------CCSCHHHHHHHHHHHTTSCHHHHHH----HHHHHHTS--------------T
T ss_pred HHHHHHHHHcCCCCCCC-----------CCCCHHHHHHHHHHhCcChHHHHHH----HHHHHHHH--------------h
Confidence 3556666676644 211 2237899999999999999988863 35665422 2
Q ss_pred CCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHH
Q 002245 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRL 509 (947)
Q Consensus 430 ~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILl 509 (947)
+.|||++|+++++++| +++||+++||++|+++|+.+.+ |.+|++.|..+|+++++++|++|||||+|||+|||+
T Consensus 91 G~ptp~~la~~~~e~L----r~~G~~~~KA~~i~~lA~~~~~--g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 91 GGVVPAALLKVSGDDL----RGVGLSWAKVRTVQAAAAAAVS--GQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLL 164 (225)
T ss_dssp TCSCHHHHTTSCHHHH----HHTTCCHHHHHHHHHHHHHHHT--TSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CcCCHHHHHcCCHHHH----HHCCCcHHHHHHHHHHHHHHHh--CCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3499999999999987 7799999999999999999997 678999999999999999999999999999999999
Q ss_pred HhcCCc-eeec-chHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCchHHHHHhhhh
Q 002245 510 LTLHHL-AFPV-DTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWP 562 (947)
Q Consensus 510 fafgrp-afPV-DTHV~RVl~RLGlv~~k~tpeevEk~Le~llP~~e~Iqk~LW~ 562 (947)
|+||++ +||| |+||+|++.|+| + +++++...+.+.|.-...+.++|.
T Consensus 165 ~~lg~~d~fpv~D~~v~r~~~~l~--~----~~~~~~~~e~~~P~r~~a~~~Lw~ 213 (225)
T 2yg9_A 165 FALARPDVFSSGDLALRQGVERLY--P----GEDWRDVTARWAPYRSLASRYLWA 213 (225)
T ss_dssp HTSCCSCCCCTTCHHHHHHHHHHS--T----TSCHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCCCCCeeeCccHHHHHHHHHhC--C----HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998 8999 999999999998 2 334666777788854445555553
No 13
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.90 E-value=1.4e-24 Score=224.93 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=123.9
Q ss_pred HHHHHHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCcccccc
Q 002245 347 EKTRNLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSR 426 (947)
Q Consensus 347 ~~~~~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~ 426 (947)
.+..+|+++++........+... + ..+....++|++||++|||+|+++..++++ |.+|
T Consensus 18 ~~~~~~~~~~~~~i~~r~~ef~~--~-~~~~~~~~~fe~Lv~~ILsqqts~~~~~~a----~~~L--------------- 75 (219)
T 3n0u_A 18 KELERIREEAKPLVEQRFEEFKR--L-GEEGTEEDLFCELSFCVLTANWSAEGGIRA----QKEI--------------- 75 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--H-HHHCCHHHHHHHHHHHHHTTTSCHHHHHHH----HHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--h-ccCCCCCCHHHHHHHHHHhCCCCHHHHHHH----HHHH---------------
Confidence 45666777766654332222110 0 011223478999999999999888666532 1222
Q ss_pred CcCCCCCHHHHHcCCHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHH-hCCCCcHhH
Q 002245 427 DRMDSLDYEALRCANVKEISEAIKERG--MNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLL-SIRGLGLKS 503 (947)
Q Consensus 427 ~~~~~pTpeaLa~A~~eELeelIR~lG--fyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLl-sLPGVG~KT 503 (947)
|+.|+.+++++|+++|+++| ||++||+||+++|+.+ | ++..+...+..+++++|+ +|||||+||
T Consensus 76 -------p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i----g--~l~~~~~~~~~~~r~~L~~~l~GVG~kT 142 (219)
T 3n0u_A 76 -------GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL----G--KLKNLVKGDPFQSREFLVRNAKGIGWKE 142 (219)
T ss_dssp -------TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT----T--THHHHHHSCHHHHHHHHHHHSTTCCHHH
T ss_pred -------HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----H--HHHHHhcCCcHHHHHHHHHhCCCCCHHH
Confidence 56899999999999999999 9999999999999976 2 344454667778899999 999999999
Q ss_pred HHHHHHHhcCC-ceeecchHHHHHHHHhCCCCCC------CCHHHHHHHHHHh
Q 002245 504 VECVRLLTLHH-LAFPVDTNVGRIAVRLGWVPLQ------PLPESLQLHLLEL 549 (947)
Q Consensus 504 Ad~ILlfafgr-pafPVDTHV~RVl~RLGlv~~k------~tpeevEk~Le~l 549 (947)
|++||++ +|+ ++||||+||.|+++|+||++.. +.|.+++..+.++
T Consensus 143 A~~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~ 194 (219)
T 3n0u_A 143 ASHFLRN-TGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKV 194 (219)
T ss_dssp HHHHHHT-TTCCSCCCCCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCeeeecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHH
Confidence 9999999 777 8999999999999999998751 2355566655543
No 14
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.88 E-value=6e-23 Score=213.27 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=134.1
Q ss_pred ccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHH
Q 002245 381 KVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAE 460 (947)
Q Consensus 381 ~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk 460 (947)
++|+.||+.||++|++.+.+. +.|.+| .. +|- ...||||++|++++.++| +++||+++||+
T Consensus 49 d~fe~Lv~~Il~Qq~s~~~a~----~~~~rL-~~---~Gg-------~~~fPtp~~la~~~~e~L----r~~G~~~rKa~ 109 (228)
T 3s6i_A 49 EPYEELIRAVASQQLHSKAAN----AIFNRF-KS---ISN-------NGQFPTPEEIRDMDFEIM----RACGFSARKID 109 (228)
T ss_dssp CHHHHHHHHHHHSSSCHHHHH----HHHHHH-HT---SSG-------GGSCCCHHHHHHSCHHHH----HHHTCCHHHHH
T ss_pred CHHHHHHHHHHhCcCCHHHHH----HHHHHH-HH---hcC-------CCCCCCHHHHHcCCHHHH----HHcCCCHHHHH
Confidence 679999999999999988776 335565 32 210 134899999999999986 77999999999
Q ss_pred HHHHHHHHHHHhhCCC-ChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCCc-eeecc-hHHHHHHHHhCCCCCCC
Q 002245 461 RMKDFLNRLVREHGSI-DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVD-TNVGRIAVRLGWVPLQP 537 (947)
Q Consensus 461 ~Ik~lA~~Lve~yGgi-DLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgrp-afPVD-THV~RVl~RLGlv~~k~ 537 (947)
+|+++|+.+.+ |.+ +++.|..+++++++++|++|||||+|||++||+|+||++ +|||| .|++|++.|+.......
T Consensus 110 ~i~~~A~~~~~--g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~~~ 187 (228)
T 3s6i_A 110 SLKSIAEATIS--GLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIP 187 (228)
T ss_dssp HHHHHHHHHHH--TSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHc--CCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCCCC
Confidence 99999999996 677 789999999999999999999999999999999999999 89995 67999999985545456
Q ss_pred CHHHHHHHHHHhcCchHHHHHhhhh
Q 002245 538 LPESLQLHLLELYPVLESIQKYLWP 562 (947)
Q Consensus 538 tpeevEk~Le~llP~~e~Iqk~LW~ 562 (947)
++.+++...+.+-|.-...+.+||.
T Consensus 188 ~~~~~~~~~e~w~P~r~~A~~yLw~ 212 (228)
T 3s6i_A 188 TKMYVLKHSEICAPFRTAAAWYLWK 212 (228)
T ss_dssp CHHHHHHHHGGGTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7888888877787754455566664
No 15
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.88 E-value=1.1e-22 Score=217.95 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=138.5
Q ss_pred cccccchhhhhhcccccccccccccccChHHHHHHHHhccCccc-cccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHH
Q 002245 380 HKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE-RSRDRMDSLDYEALRCANVKEISEAIKERGMNNML 458 (947)
Q Consensus 380 ~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~e-r~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~K 458 (947)
.++|+.||+.||++|++.+.+.+ .|.+|...+ |-+-. .......||||++|+++++++|++ +|+.. |
T Consensus 113 ~dpfE~Lv~~IlsQq~s~~~a~~----~~~rL~~~~---G~~~~~~g~~~~~fPtpe~la~~~~e~L~~----~g~g~-R 180 (290)
T 3i0w_A 113 QDPFEILLSFIISANNRIPMIKK----CINNISEKA---GKKLEYKGKIYYAFPTVDKLHEFTEKDFEE----CTAGF-R 180 (290)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHH----HHHHHHHHH---SCEEEETTEEEECCCCHHHHTTCCHHHHHH----TTCGG-G
T ss_pred CCHHHHHHHHHHhCcccHHHHHH----HHHHHHHHh---CCCcccCCcccccCCcHHHHHCCCHHHHHH----cCCch-H
Confidence 37899999999999999988873 466775542 32100 001123589999999999999877 45543 8
Q ss_pred HHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCCc-eeecchHHHHHHHHhCCCCCCC
Q 002245 459 AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQP 537 (947)
Q Consensus 459 Ak~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgrp-afPVDTHV~RVl~RLGlv~~k~ 537 (947)
|++|+++|+.+.+ |.+|++.|..++.++++++|++|||||+|||+|||+|+||+| +||||+||+|++.|+|+.. .+
T Consensus 181 a~~I~~~A~~i~~--g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~-~~ 257 (290)
T 3i0w_A 181 AKYLKDTVDRIYN--GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAP-DV 257 (290)
T ss_dssp HHHHHHHHHHHHT--TSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCT-TC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCC-CC
Confidence 9999999999997 567999999999999999999999999999999999999998 9999999999999999876 46
Q ss_pred CHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHHhHh
Q 002245 538 LPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKV 585 (947)
Q Consensus 538 tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~fGR~ 585 (947)
+++++++.+.+.++. | ...+++.|+.+||.
T Consensus 258 ~~~~i~~~~~~~~~p--------~----------~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 258 SLKKIRDFGREKFGS--------L----------SGFAQQYLFYYARE 287 (290)
T ss_dssp CHHHHHHHHHHHHGG--------G----------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcch--------H----------HHHHHHHHHHhhhh
Confidence 888888877433321 2 24577778888876
No 16
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.88 E-value=4.4e-23 Score=227.10 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=128.1
Q ss_pred HHHHhhhhhcCCCccccCCCCchhhhhcccccccchhhhhhcccccccccccccccChHHHHHHHHhccCccc--cccCc
Q 002245 351 NLGDDISVANKLSDNKLIEPNSVEQVLSAHKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQE--RSRDR 428 (947)
Q Consensus 351 ~i~~rl~~~~~~p~~~l~~~~~~~~~~~~~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~e--r~~~~ 428 (947)
.++.++.+.+|-.. +. . .++|+.||++||++|++++.+++ .|.+|.+.+ |-.-. .....
T Consensus 133 p~l~~l~~~~~glR--~~---------~-~dpfE~LV~~ILsQq~s~~~a~~----~~~rL~~~~---G~~~~~~~g~~~ 193 (360)
T 2xhi_A 133 SHFQEVAQKFQGVR--LL---------R-QDPIECLFSFICSSNNNIARITG----MVERLCQAF---GPRLIQLDDVTY 193 (360)
T ss_dssp HHHHHHHHHSTTCC--CC---------C-CCHHHHHHHHHTTTTSCHHHHHH----HHHHHHHHH---SCEEEEETTEEE
T ss_pred HHHHHHHHHcCCCC--CC---------C-CCHHHHHHHHHHhCcCcHHHHHH----HHHHHHHHh---CCCcccCCCccc
Confidence 35556666666443 11 1 37899999999999999988873 457776542 32100 00012
Q ss_pred CCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCC-CChhhhhcCCchHHHHHHHhCCCCcHhHHHHH
Q 002245 429 MDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGS-IDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507 (947)
Q Consensus 429 ~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGg-iDLe~L~~vP~deareeLlsLPGVG~KTAd~I 507 (947)
+.||||++|++++.+ +.|+.+|| ..||++|+++|+.+.+.|+| ++|+.|..+|.++++++|++|||||+|||+||
T Consensus 194 ~~fPtpe~La~~~~e---e~Lr~~Gl-~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~i 269 (360)
T 2xhi_A 194 HGFPSLQALAGPEVE---AHLRKLGL-GYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKI 269 (360)
T ss_dssp ECCCCHHHHTSTTHH---HHHHHTTC-TTHHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHH
T ss_pred ccCCCHHHHHcCCHH---HHHHHcCC-cHHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHH
Confidence 358999999999654 45788999 58999999999999998876 68999999999999999999999999999999
Q ss_pred HHHhcCCc-eeecchHHHHHHHHh-CCCCC
Q 002245 508 RLLTLHHL-AFPVDTNVGRIAVRL-GWVPL 535 (947)
Q Consensus 508 Llfafgrp-afPVDTHV~RVl~RL-Glv~~ 535 (947)
|+|+||++ +||||+||.||+.|+ ||.+.
T Consensus 270 ll~alg~pd~fpvDthV~Ri~~r~~gl~~~ 299 (360)
T 2xhi_A 270 CLMALDKPQAVPVNVHMWHIAQRDYSWHPT 299 (360)
T ss_dssp HHHHSCCTTCCCCSHHHHHHHHHHHCCCCS
T ss_pred HHHhCCCCCEEEecHHHHHHHHHHhCcccc
Confidence 99999999 999999999999996 98763
No 17
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.87 E-value=6.2e-23 Score=203.74 Aligned_cols=115 Identities=16% Similarity=0.244 Sum_probs=102.9
Q ss_pred cccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHH
Q 002245 380 HKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLA 459 (947)
Q Consensus 380 ~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KA 459 (947)
.++|++||++|||+|++|+.++++ +.+|++. ++||++|++|++++|+++|+++|||++||
T Consensus 29 ~dP~~vLVs~ILsqQT~~~~v~~~----~~~l~~~----------------~pt~~~la~a~~~el~~~i~~lG~y~~KA 88 (161)
T 4e9f_A 29 HDPWKLLIATIFLNRTSGKMAIPV----LWKFLEK----------------YPSAEVARTADWRDVSELLKPLGLYDLRA 88 (161)
T ss_dssp TSHHHHHHHHHHTTTSCHHHHHHH----HHHHHHH----------------SCSHHHHTTSCHHHHHHHHGGGSCHHHHH
T ss_pred CChHHHHHHHHHHhhCcHHHHHHH----HHHHHHH----------------CCCHHHHhccChHhHHhHhhhcCCHHHHH
Confidence 478999999999999999999864 3666543 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCC--ceeecchHHHHHHHHh
Q 002245 460 ERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHH--LAFPVDTNVGRIAVRL 530 (947)
Q Consensus 460 k~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgr--pafPVDTHV~RVl~RL 530 (947)
++|+++++.++. .+ +++|++|||||+|||++|++|+||. .++|+|++++|++.|+
T Consensus 89 k~i~~~a~~~vp--------------~~--~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl 145 (161)
T 4e9f_A 89 KTIVKFSDEYLT--------------KQ--WKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL 145 (161)
T ss_dssp HHHHHHHHHHHH--------------SC--CSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHH
T ss_pred HHHHHHhCCcCC--------------CC--hhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHH
Confidence 999999986653 33 5679999999999999999999995 7999999999999987
No 18
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.85 E-value=1.3e-20 Score=200.40 Aligned_cols=162 Identities=14% Similarity=0.101 Sum_probs=127.7
Q ss_pred cccccchhhhhhcccccccccccccccChHHHHHHHHhccCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHH
Q 002245 380 HKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLA 459 (947)
Q Consensus 380 ~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KA 459 (947)
.++|+.||+.||++|++++.+++ .|.+|... +|-.-........||||++|+++++++| +++||+++||
T Consensus 111 ~d~fe~lv~~Il~Qq~s~~~a~~----~~~rL~~~---~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~G~~~~ra 179 (282)
T 1mpg_A 111 VDAFEQGVRAILGQLVSVAMAAK----LTARVAQL---YGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRA 179 (282)
T ss_dssp SCHHHHHHHHHHTTTSCHHHHHH----HHHHHHHH---HCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHH
T ss_pred CCHHHHHHHHHHhCcccHHHHHH----HHHHHHHH---hCCCCCCCCCcccCCCHHHHHcCCHHHH----HHcCCCHHHH
Confidence 47899999999999999998874 46666544 2322100012356899999999999997 7799999999
Q ss_pred HHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCCc-eeecchHHHHHHHHhCCCCCCCC
Q 002245 460 ERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPL 538 (947)
Q Consensus 460 k~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgrp-afPVDTHV~RVl~RLGlv~~k~t 538 (947)
++|+++|+.+.+ +.++++.+ .+.++++++|++|||||+|||++||+|+||++ +||||+|+.| +|++ ..+
T Consensus 180 ~~i~~~A~~~~~--~~~~~~~~--~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l~----~~~ 249 (282)
T 1mpg_A 180 EALIHLANAALE--GTLPMTIP--GDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRFP----GMT 249 (282)
T ss_dssp HHHHHHHHHHHH--TCSCSSCC--SCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHST----TCC
T ss_pred HHHHHHHHHHHc--CCCCcccc--CCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHhc----cCC
Confidence 999999999997 34555554 46678999999999999999999999999999 9999988877 6663 368
Q ss_pred HHHHHHHHHHhcCchHHHHHhhhh
Q 002245 539 PESLQLHLLELYPVLESIQKYLWP 562 (947)
Q Consensus 539 peevEk~Le~llP~~e~Iqk~LW~ 562 (947)
++++++.++.+.|.-...+.++|.
T Consensus 250 ~~~~~~~~~~~~P~r~~a~~~lw~ 273 (282)
T 1mpg_A 250 PAQIRRYAERWKPWRSYALLHIWY 273 (282)
T ss_dssp HHHHHHHHGGGTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899998888888854444444553
No 19
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.84 E-value=6.7e-21 Score=204.20 Aligned_cols=163 Identities=22% Similarity=0.222 Sum_probs=127.9
Q ss_pred cccccchhhhhhcccccccccccccccChHHHHHHHHhccCcccc-ccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHH
Q 002245 380 HKVYDETNPNISKSKKRKADGEKKNAIDWESLRKEVQRNSGKQER-SRDRMDSLDYEALRCANVKEISEAIKERGMNNML 458 (947)
Q Consensus 380 ~~~~~lLia~iLSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er-~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~K 458 (947)
.++|+.||..||++|++.+.+.+ .|.+|.+. +|-+-+. ....+.||||++|+++++++| +++||+++|
T Consensus 116 ~d~fe~lv~~Il~Qq~s~~~a~~----~~~rL~~~---~G~~~~~~g~~~~~fPtp~~la~~~~~~L----r~~G~~~rK 184 (295)
T 2jhn_A 116 MSVFEGIAKAIIQQQISFVVAEK----LAAKIVGR---FGDEVEWNGLKFYGFPTQEAILKAGVEGL----RECGLSRRK 184 (295)
T ss_dssp SSHHHHHHHHHHTTTSCHHHHHH----HHHHHHHH---HSCEEEETTEEEECCCCHHHHHHHHHHHH----HHTTCCHHH
T ss_pred CCHHHHHHHHHHcCcccHHHHHH----HHHHHHHH---hCCCCCCCCCccccCCCHHHHHcCCHHHH----HHcCCCHHH
Confidence 47899999999999999988873 35666544 2321100 011234899999999999886 779999999
Q ss_pred HHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCCc-eeecc-hHHHHHHHHh-CCCCC
Q 002245 459 AERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFPVD-TNVGRIAVRL-GWVPL 535 (947)
Q Consensus 459 Ak~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgrp-afPVD-THV~RVl~RL-Glv~~ 535 (947)
|++|+++|+. + +++.|..+|+++++++|++|||||+|||++||+|+|| + +|||| .|++|++.|+ |+...
T Consensus 185 a~~i~~~A~~------g-~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~~ 256 (295)
T 2jhn_A 185 AELIVEIAKE------E-NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGEI 256 (295)
T ss_dssp HHHHHHHHTC------S-SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHC------C-CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCCC
Confidence 9999999987 3 7888889999999999999999999999999999999 8 99995 6667799998 77542
Q ss_pred CCCHHHHHHHHHHhcCchHHHHHhhh
Q 002245 536 QPLPESLQLHLLELYPVLESIQKYLW 561 (947)
Q Consensus 536 k~tpeevEk~Le~llP~~e~Iqk~LW 561 (947)
..++.++++..+.+-|.-...+.+||
T Consensus 257 ~~~~~~~~~~~e~~~p~r~~a~~~Lw 282 (295)
T 2jhn_A 257 QSAEKVREIARERFGRFARDILFYLF 282 (295)
T ss_dssp CCHHHHHHHHHHHTGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHH
Confidence 36788888877777774334444444
No 20
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=84.15 E-value=1 Score=37.87 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 466 A~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
|+.|++.||+ ++.|...+ .+.|.+++|||+++|..|..+
T Consensus 27 a~~Ll~~fgs--~~~l~~a~----~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 27 ARRLLKHFGS--VERVFTAS----VAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp HHHHHHHHCS--HHHHHHCC----HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHhCC----HHHHhcCCCCCHHHHHHHHHH
Confidence 3444455654 55555443 457999999999999988765
No 21
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=83.38 E-value=1.8 Score=51.11 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=54.0
Q ss_pred CHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHH-------------------------HHHHHHHhhCCCChhhhhcCCch
Q 002245 433 DYEALRCANVKEISEAIKERGMNNMLAERMKD-------------------------FLNRLVREHGSIDLEWLRDVPPD 487 (947)
Q Consensus 433 TpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~-------------------------lA~~Lve~yGgiDLe~L~~vP~d 487 (947)
++.+|..++.++|..+ -||...+|.+|++ .|+.|.+.|+ +++.|....
T Consensus 470 ~~~Dly~L~~~~L~~l---~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~--sl~~l~~a~-- 542 (586)
T 4glx_A 470 TPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG--TLEALEAAS-- 542 (586)
T ss_dssp SGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHC--SHHHHHHCC--
T ss_pred CHHHHhCCCHHHHhcc---cCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcC--CHHHHHccC--
Confidence 5666666666665432 3666666666653 3455555555 356666543
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHhcCCceeecchHHHHHHHHh
Q 002245 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 530 (947)
Q Consensus 488 eareeLlsLPGVG~KTAd~ILlfafgrpafPVDTHV~RVl~RL 530 (947)
.++|.+++|||+++|..|..|- -|-+.+.++.+|
T Consensus 543 --~e~l~~i~giG~~~A~si~~ff-------~~~~n~~~i~~L 576 (586)
T 4glx_A 543 --IEELQKVPDVGIVVASHVHNFF-------AEESNRNVISEL 576 (586)
T ss_dssp --HHHHTTSTTCCHHHHHHHHHHH-------HSHHHHHHHHHH
T ss_pred --HHHHhcCCCccHHHHHHHHHHH-------cCHHHHHHHHHH
Confidence 4689999999999999998762 255666777776
No 22
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=82.04 E-value=1.1 Score=38.68 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 469 LVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 469 Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
|++.||+ ++.|...+ .++|.+++|||+++|..|+.+
T Consensus 40 Ll~~fgs--l~~l~~a~----~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 40 LLKYMGG--LQGLRNAS----VEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHSC--HHHHHHCC----HHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHcCC--HHHHHHCC----HHHHHHCCCCCHHHHHHHHHH
Confidence 3344554 55555543 457999999999999988765
No 23
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=82.02 E-value=0.89 Score=47.33 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=21.9
Q ss_pred chHHHHHHHhCCCCcHhHHHHHHHHhcC
Q 002245 486 PDKAKDYLLSIRGLGLKSVECVRLLTLH 513 (947)
Q Consensus 486 ~deareeLlsLPGVG~KTAd~ILlfafg 513 (947)
-+++.+.|.+|||||+|||.-+..+.+.
T Consensus 21 l~~LI~~l~~LPGIG~KsA~RlA~hLL~ 48 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRLAFFIIN 48 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHc
Confidence 3567899999999999999766555443
No 24
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=81.84 E-value=1.4 Score=39.15 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=27.3
Q ss_pred HHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHh
Q 002245 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511 (947)
Q Consensus 467 ~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfa 511 (947)
+.|++.||+ ++.|...+ .++|.+++|||.++|..|+.+.
T Consensus 46 ~~Ll~~fgs--~~~l~~as----~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 46 QTLLTTFGS--LEQLIAAS----REDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHSS--HHHHHSCC----HHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHhCC----HHHHHhCCCCCHHHHHHHHHHH
Confidence 344445654 55555544 4589999999999999987653
No 25
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=81.59 E-value=1.4 Score=38.81 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=27.5
Q ss_pred HHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHh
Q 002245 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511 (947)
Q Consensus 466 A~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfa 511 (947)
|+.|++.||+ ++.+...+ .++|.+++|||+++|..|..+.
T Consensus 32 A~~Ll~~fgs--l~~l~~a~----~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 32 SQTLLTTFGS--LEQLIAAS----REDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHTCB--HHHHHHCC----HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCC--HHHHHhCC----HHHHHhCCCCCHHHHHHHHHHH
Confidence 3444455654 55555444 4579999999999999887653
No 26
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=79.46 E-value=1.2 Score=46.79 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=21.5
Q ss_pred hHHHHHHHhCCCCcHhHHHHHHHHhcC
Q 002245 487 DKAKDYLLSIRGLGLKSVECVRLLTLH 513 (947)
Q Consensus 487 deareeLlsLPGVG~KTAd~ILlfafg 513 (947)
+++++.|.+|||||+|||.-+..+.+.
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hLL~ 34 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHLFE 34 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHHHc
Confidence 567899999999999999666555443
No 27
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=75.68 E-value=4.5 Score=48.41 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=51.9
Q ss_pred CHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHH-------------------------HHHHHHhhCCCChhhhhcCCch
Q 002245 433 DYEALRCANVKEISEAIKERGMNNMLAERMKDF-------------------------LNRLVREHGSIDLEWLRDVPPD 487 (947)
Q Consensus 433 TpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~l-------------------------A~~Lve~yGgiDLe~L~~vP~d 487 (947)
++.+|..+..++|..+ -||...++.+|++. |+.|.+.||+ ++.|....
T Consensus 470 ~~aDL~~L~~~~L~~l---~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgs--l~~l~~As-- 542 (671)
T 2owo_A 470 TPADLFKLTAGKLTGL---ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGT--LEALEAAS-- 542 (671)
T ss_dssp SGGGGGTCCHHHHHTS---TTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCS--HHHHHTCC--
T ss_pred CHHHHHhhCHHHhhcc---cccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCC--HHHHHhCC--
Confidence 6667777776665442 47766666666653 3333444543 55565443
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHhcCCceeecchHHHHHHHHh
Q 002245 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 530 (947)
Q Consensus 488 eareeLlsLPGVG~KTAd~ILlfafgrpafPVDTHV~RVl~RL 530 (947)
.++|.+++|||+++|..|..|- . +-+...++.+|
T Consensus 543 --~eeL~~i~GIG~~~A~sI~~ff-~------~~~~~~~i~~L 576 (671)
T 2owo_A 543 --IEELQKVPDVGIVVASHVHNFF-A------EESNRNVISEL 576 (671)
T ss_dssp --HHHHTTSTTCCHHHHHHHHHHH-T------CHHHHHHHHHH
T ss_pred --HHHHhhcCCCCHHHHHHHHHHH-H------hHHHHHHHHHH
Confidence 4689999999999999987763 2 34455566555
No 28
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=74.87 E-value=5.7 Score=40.63 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=54.8
Q ss_pred CcCCCCCHHHHHcCCHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH---HhhCCCChh---h------------hhcCCc
Q 002245 427 DRMDSLDYEALRCANVKEISEAIKERGM--NNMLAERMKDFLNRLV---REHGSIDLE---W------------LRDVPP 486 (947)
Q Consensus 427 ~~~~~pTpeaLa~A~~eELeelIR~lGf--yn~KAk~Ik~lA~~Lv---e~yGgiDLe---~------------L~~vP~ 486 (947)
.++..++|+.|+..++++|+.++..-|. ++.|.+.++.=|+.++ ++||+++-= + +.++|.
T Consensus 58 ~AF~~FD~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~ 137 (186)
T 2jg6_A 58 EAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRIT 137 (186)
T ss_dssp HHTGGGCHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCS
T ss_pred HHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCC
Confidence 3456789999999999999999999998 4557777776666665 457764311 0 123332
Q ss_pred h-----HHHHHHHh--CCCCcHhHHHHHHH
Q 002245 487 D-----KAKDYLLS--IRGLGLKSVECVRL 509 (947)
Q Consensus 487 d-----eareeLls--LPGVG~KTAd~ILl 509 (947)
. .+-+.|.+ ++-||+-|+.++|.
T Consensus 138 ~t~~S~~lsKdLKkrGFkFvGpt~~YafmQ 167 (186)
T 2jg6_A 138 VDDTATQLSKDLKQYGFKFLGPVTVFSFLE 167 (186)
T ss_dssp CCHHHHHHHHHHHTTTCCSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCeeechHHHHHHHH
Confidence 1 23344554 67778877766654
No 29
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=74.18 E-value=4.8 Score=41.08 Aligned_cols=49 Identities=6% Similarity=0.129 Sum_probs=38.8
Q ss_pred cCCCCCHHHHHcCCHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH---HhhCCC
Q 002245 428 RMDSLDYEALRCANVKEISEAIKERGM--NNMLAERMKDFLNRLV---REHGSI 476 (947)
Q Consensus 428 ~~~~pTpeaLa~A~~eELeelIR~lGf--yn~KAk~Ik~lA~~Lv---e~yGgi 476 (947)
++..++|+.|+..++++|+.++..-|. ++.|.+.++.=|+.++ ++||++
T Consensus 59 AF~~Fd~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf 112 (183)
T 2ofk_A 59 CFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESF 112 (183)
T ss_dssp HTGGGCHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHcCCCHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456789999999999999999999998 4567777777677665 456664
No 30
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=73.02 E-value=1 Score=43.85 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=36.6
Q ss_pred HHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHH
Q 002245 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 436 aLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~IL 508 (947)
+|-.|+.++|.. --|++..||+.|+ .||.| .. .++|+.++|||+|+.+.+-
T Consensus 56 niNtA~~~eL~~---LpGiGp~~A~~II--------~~GpF---------~s--vedL~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 56 DLNNTNIAAFIQ---YRGLYPTLAKLIV--------KNAPY---------ES--VEDVLNIPGLTERQKQILR 106 (134)
T ss_dssp ETTTSCGGGGGG---STTCTHHHHHHHH--------HTCCC---------SS--GGGGGGCTTCCHHHHHHHH
T ss_pred eCcccCHHHHHH---CCCCCHHHHHHHH--------HcCCC---------CC--HHHHHhCCCCCHHHHHHHH
Confidence 345667777654 2588888998887 36664 11 5679999999999887764
No 31
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=72.04 E-value=7.5 Score=42.55 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 442 ~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
.++|+.++.-.|=...|++.-..+|..|.. ++. .+.. .+.|.+|||||+++|+.|.-+
T Consensus 19 L~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~-l~~-------~i~~---~~~l~~LpGIG~~~A~kI~E~ 76 (335)
T 2fmp_A 19 LTELANFEKNVSQAIHKYNAYRKAASVIAK-YPH-------KIKS---GAEAKKLPGVGTKIAEKIDEF 76 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-CSS-------CCCC---HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHh-CCc-------cccC---HHHHhcCCCCcHHHHHHHHHH
Confidence 356666666566555688888888888765 333 2221 345999999999999998865
No 32
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=70.45 E-value=2.6 Score=43.78 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.8
Q ss_pred HHHHHhCCCCcHhHHHHHHHHhcCC
Q 002245 490 KDYLLSIRGLGLKSVECVRLLTLHH 514 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlfafgr 514 (947)
.+.|.++||||+|||+-|.+-.-++
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999887655454
No 33
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=69.21 E-value=1.5 Score=45.45 Aligned_cols=44 Identities=23% Similarity=0.182 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHhcCCcee---ecchHHHHHHHHhCC
Q 002245 488 KAKDYLLSIRGLGLKSVECVRLLTLHHLAF---PVDTNVGRIAVRLGW 532 (947)
Q Consensus 488 eareeLlsLPGVG~KTAd~ILlfafgrpaf---PVDTHV~RVl~RLGl 532 (947)
++...|.+++|||+|+|..||.. |+-..+ +++..+.|+..==|+
T Consensus 85 ~lf~~L~sv~GIGpk~A~~Ils~-~~~~~l~~aI~~~d~~~L~~vpGI 131 (212)
T 2ztd_A 85 DLFLTLLSVSGVGPRLAMAALAV-HDAPALRQVLADGNVAALTRVPGI 131 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHTSTTC
T ss_pred HHHHHhcCcCCcCHHHHHHHHHh-CCHHHHHHHHHhCCHHHHhhCCCC
Confidence 35677999999999999999874 554333 445566665543344
No 34
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=69.12 E-value=4.1 Score=48.73 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=33.7
Q ss_pred HHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCCceeecchHHHHHHHHh
Q 002245 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL 530 (947)
Q Consensus 466 A~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgrpafPVDTHV~RVl~RL 530 (947)
|+.|.+.||. ++.|.... .++|.+++|||+++|+.|..|- + +-+...++.+|
T Consensus 520 Ak~La~~Fgs--l~~l~~As----~eeL~~I~GIG~~~A~sI~~ff-~------~~~~~~~i~~L 571 (667)
T 1dgs_A 520 ARNLARRFGT--MDRLLEAS----LEELIEVEEVGELTARAILETL-K------DPAFRDLVRRL 571 (667)
T ss_dssp HHHHHHTTSB--HHHHTTCC----HHHHHTSTTCCHHHHHHHHHHH-H------CHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHhCC----HHHHHhccCcCHHHHHHHHHHH-h------hHHHHHHHHHH
Confidence 4444455543 55554433 5689999999999999998763 2 34555666665
No 35
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=68.99 E-value=2.4 Score=36.29 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHhCCCCcHhHHHHHHHH
Q 002245 490 KDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlf 510 (947)
.+.|.+|||||+++|..|+.+
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 567999999999999999875
No 36
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=67.16 E-value=6.3 Score=43.59 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 443 eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
++|+.++.-.| ...|++.-.++|..|.. ++. + +.. .+.|.+|||||.++|+.|.-+
T Consensus 25 ~~ia~~~e~~g-~~~r~~AYr~Aa~~l~~-l~~-~------i~~---~~~l~~lpGIG~~~A~kI~E~ 80 (360)
T 2ihm_A 25 ETLAEAAGFEA-NEGRLLSFSRAASVLKS-LPC-P------VAS---LSQLHGLPYFGEHSTRVIQEL 80 (360)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHH-CSS-C------CCS---GGGGTTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CcHHHHHHHHHHHHHHh-CCc-c------cCC---HHHHhcCCCCCHHHHHHHHHH
Confidence 56666666677 66788888888888875 333 2 221 224999999999999998865
No 37
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=66.89 E-value=9.1 Score=41.92 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 443 eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
++|+.++.-.|=. .|++.-..+|..|.. ++. .+.. .++|.+|||||+++|..|.-+
T Consensus 21 ~~ia~~~e~~g~~-~r~~AYr~Aa~~l~~-l~~-------~i~~---~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 21 EVLAKAYSVQGDK-WRALGYAKAINALKS-FHK-------PVTS---YQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHS-CCS-------CCCC---HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-HhHHHHHHHHHHHHh-CCc-------cccC---HHHHhcCCCccHHHHHHHHHH
Confidence 4555555545554 677777777777764 332 1211 335889999999999988755
No 38
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=66.61 E-value=1.7 Score=40.07 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=35.6
Q ss_pred HHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 436 aLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
+|-.|+.++|.. | -|+...+|+.|.+ +|+| .+ +++|+.++|||+++.+-+.-+
T Consensus 19 diNtAs~~eL~~-l--pGIG~~~A~~IV~--------~GpF---------~s--~edL~~V~Gig~~~~e~l~~~ 71 (97)
T 3arc_U 19 DLNNTNIAAFIQ-Y--RGLYPTLAKLIVK--------NAPY---------ES--VEDVLNIPGLTERQKQILREN 71 (97)
T ss_dssp ETTTSCGGGGGG-S--TTCTTHHHHHHHH--------HCCC---------SS--GGGGGGCTTCCHHHHHHHHHT
T ss_pred eCCcCCHHHHhH-C--CCCCHHHHHHHHH--------cCCC---------CC--HHHHHhccCCCHHHHHHHHHH
Confidence 345566667654 3 3555567877776 4664 12 567899999999998887653
No 39
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=66.15 E-value=8.4 Score=34.69 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=37.7
Q ss_pred HHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 434 YEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 434 peaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
+-+|..++.++|.. |. |+....|+.|.+.-. ..|.+ .+ .++|..++|||+++|+.+...
T Consensus 31 ~i~iN~a~~~~L~~-ip--GIG~~~A~~Il~~r~----~~g~f---------~s--~edL~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 31 LDLLNEGSARDLRS-LQ--RIGPKKAQLIVGWRE----LHGPF---------SQ--VEDLERVEGITGKQMESFLKA 89 (98)
T ss_dssp HHHHHHSCHHHHHH-ST--TCCHHHHHHHHHHHH----HHCCC---------SS--GGGGGGSTTCCHHHHHHHHHH
T ss_pred CeehhhCCHHHHHH-CC--CCCHHHHHHHHHHHH----hcCCc---------CC--HHHHHhCCCCCHHHHHHHHHC
Confidence 34567777777754 44 454556777765422 12442 11 345899999999999988654
No 40
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=64.94 E-value=10 Score=42.40 Aligned_cols=60 Identities=13% Similarity=-0.079 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH-hcCC
Q 002245 443 KEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL-TLHH 514 (947)
Q Consensus 443 eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf-afgr 514 (947)
++|+.++.-.| ...|++.-..+|..|.. ++. ++.. .+.|.+|||||.++|..|.-+ .-|.
T Consensus 44 ~~ia~~~e~~g-~~~rv~AYr~Aa~~l~~-l~~-~i~~---------~~~l~~lpGIG~~ia~kI~E~l~tG~ 104 (381)
T 1jms_A 44 DILAENDELRE-NEGSCLAFMRASSVLKS-LPF-PITS---------MKDTEGIPCLGDKVKSIIEGIIEDGE 104 (381)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHT-CSS-CCCS---------GGGGTTCSSCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhC-CcHHHHHHHHHHHHHHh-CCc-cccC---------HHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 56666666677 66788888888888865 332 2221 224899999999999998855 3444
No 41
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=64.35 E-value=1.9 Score=36.91 Aligned_cols=53 Identities=25% Similarity=0.443 Sum_probs=33.1
Q ss_pred HHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 436 ALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 436 aLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
+|..++.++|.. | -|....+|+.|.+. + .+ .+ .++|.+++|||+++++-|.-+
T Consensus 20 diN~a~~~~L~~-i--pGIG~~~A~~Il~~-------r-~~---------~s--~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 20 SLNEASLEELMA-L--PGIGPVLARRIVEG-------R-PY---------AR--VEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp ETTTCCHHHHTT-S--TTCCHHHHHHHHHT-------C-CC---------SS--GGGGGGSTTCCHHHHHHHGGG
T ss_pred ChhhCCHHHHHh-C--CCCCHHHHHHHHHH-------c-cc---------CC--HHHHHhCCCCCHHHHHHHHHh
Confidence 445566666655 2 35555566665542 1 11 11 457889999999999988543
No 42
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=60.48 E-value=8.6 Score=38.98 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=26.0
Q ss_pred HHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 467 NRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 467 ~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
+.|++.||. ++.|...+ .++|..++|||+++|..|..+
T Consensus 176 ~~Ll~~fgs--~~~l~~a~----~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 176 ERILERFGS--LERFFTAS----KAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHHHHSS--HHHHTTCC----HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCC--HHHHHhCC----HHHHhhCCCCCHHHHHHHHHH
Confidence 344445664 45554433 457899999999999988765
No 43
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=59.35 E-value=6.4 Score=35.22 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.9
Q ss_pred hHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 487 DKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 487 deareeLlsLPGVG~KTAd~ILlf 510 (947)
..+...|..|||||+|.+..+|..
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred ccHHHHHHhCCCCCHHHHHHHHHH
Confidence 456789999999999999877654
No 44
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=59.28 E-value=18 Score=36.83 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.4
Q ss_pred HHHHHhCCCCcHhHHHHHHHHhcCC
Q 002245 490 KDYLLSIRGLGLKSVECVRLLTLHH 514 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlfafgr 514 (947)
.+.|.++||||+|||+-|...--++
T Consensus 106 ~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 106 ARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 5689999999999999987654344
No 45
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=58.62 E-value=22 Score=32.02 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHH
Q 002245 458 LAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 458 KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~IL 508 (947)
++.....++..|.. |+. .+.. -+++..|+|||+++|+.|-
T Consensus 36 ~~~~Y~KA~~sLk~-~P~-------~i~s---~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 36 TRFVFQKALRSLQR-YPL-------PLRS---GKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp THHHHHHHHHHHHH-CCS-------CCCS---HHHHHTCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCC-------CCCC---HHHHHHhhcccHHHHHHHH
Confidence 35556666666654 553 2322 3578999999999998764
No 46
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=58.23 E-value=13 Score=38.07 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.5
Q ss_pred HHHHHhCCCCcHhHHHHHHHH
Q 002245 490 KDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlf 510 (947)
.++|.++||||+|||.-|...
T Consensus 107 ~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 107 VGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHH
Confidence 578999999999999988754
No 47
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=57.64 E-value=6.3 Score=33.17 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=17.2
Q ss_pred HHHHHhCCCCcHhHHHHHHHH
Q 002245 490 KDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlf 510 (947)
...|..|||||+|++..+|..
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~ 23 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH 23 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHHH
Confidence 347999999999999877654
No 48
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=56.80 E-value=6.4 Score=40.08 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.6
Q ss_pred HHHHHHhCCCCcHhHHHHHHHH
Q 002245 489 AKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlf 510 (947)
+...|.+++|||+|+|..||..
T Consensus 70 ~f~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 70 LFELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHh
Confidence 3457889999999999999875
No 49
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=56.05 E-value=9.1 Score=42.35 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCCC-ChhhhhcCCchHHHHHHHhCCCCcHhHHHHHH
Q 002245 453 GMNNMLAERMKDFLNRLVREHGSI-DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 453 Gfyn~KAk~Ik~lA~~Lve~yGgi-DLe~L~~vP~deareeLlsLPGVG~KTAd~IL 508 (947)
|.-...|+.|.++.. .|.+ -++.|+.=+.......|++++|||+|||..+-
T Consensus 68 GIG~~~A~kI~E~l~-----tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~ 119 (360)
T 2ihm_A 68 YFGEHSTRVIQELLE-----HGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWY 119 (360)
T ss_dssp TCCHHHHHHHHHHHH-----HSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-----cCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHH
Confidence 444556666665543 2443 12334321233447889999999999998773
No 50
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=54.39 E-value=9.2 Score=41.85 Aligned_cols=51 Identities=24% Similarity=0.506 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCCC-ChhhhhcCCchHHHHHHHhCCCCcHhHHHHHH
Q 002245 453 GMNNMLAERMKDFLNRLVREHGSI-DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 453 Gfyn~KAk~Ik~lA~~Lve~yGgi-DLe~L~~vP~deareeLlsLPGVG~KTAd~IL 508 (947)
|.-...|+.|.++.. .|.+ -++.|+.-+.......|+++||||+|||..+-
T Consensus 64 GIG~~~A~kI~E~l~-----tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~ 115 (335)
T 2fmp_A 64 GVGTKIAEKIDEFLA-----TGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFV 115 (335)
T ss_dssp TCCHHHHHHHHHHHH-----HSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH-----hCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHH
Confidence 455566777766554 2443 23444433323457889999999999998763
No 51
>1xqo_A 8-oxoguanine DNA glycosylase; helix-hairpin-helix, archaea, P.aerophilum, PA-AGOG native, DNA repair, lyase; 1.03A {Pyrobaculum aerophilum} SCOP: a.96.1.6 PDB: 1xqp_A*
Probab=53.77 E-value=27 Score=37.39 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCc--HhH-------HHHHHH
Q 002245 443 KEISEAIKERGM----NNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLG--LKS-------VECVRL 509 (947)
Q Consensus 443 eELeelIR~lGf----yn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG--~KT-------Ad~ILl 509 (947)
+++...++...+ .+.|-++|.+++..+. + +.++ ..+++.|..+-|-. .|| +...+.
T Consensus 86 ~~~~~Fl~~s~~n~Rl~~~KikRi~k~~~~~~------~---~~dl--~~l~~~LA~~l~s~~~~KTIVFAvKM~~Ya~r 154 (256)
T 1xqo_A 86 RDFLKYIETSPFLKIGVEARKKRALKACDYVP------N---LEDL--GLTLRQLSHIVGARREQKTLVFTIKILNYAYM 154 (256)
T ss_dssp HHHHHHHHHCTTCCTTHHHHHHHHHHHTTCCC------C---TTCH--HHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHhhhhh------H---HHHH--HHHHHHHHHHhCCCCCcceeeeHHHHHHHHHH
Confidence 467777887644 4778888887653332 2 2222 34466777766664 344 333444
Q ss_pred HhcC--Cc-----eeecchHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHHHH
Q 002245 510 LTLH--HL-----AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITF 582 (947)
Q Consensus 510 fafg--rp-----afPVDTHV~RVl~RLGlv~~k~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI~f 582 (947)
.+|| .| -||||.-|..+....|+++. .++++-+ ..+.+ ...|..++....-.+..+...++..
T Consensus 155 ~~~g~~~~~p~~IpIPvD~Rv~~lT~~s~l~~~--~~~~~mr-------~~~~~-~~~W~~Var~sgIPplHLDSilWli 224 (256)
T 1xqo_A 155 CSRGVNRVLPFDIPIPVDYRVARLTWCAGLIDF--PPEEALR-------RYEAV-QKIWDAVARETGIPPLHLDTLLWLA 224 (256)
T ss_dssp HHHTCCCCCCTTSCCCCCHHHHHHHHHTTSCSS--CHHHHHH-------THHHH-HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCCCCCCchHHHHHHHHHhccccC--Chhhhhh-------hhHHH-HHHHHHHHHccCCCchhhhHHHHHh
Confidence 4555 32 58999999999999999985 3433221 11223 3568877655555677888888888
Q ss_pred hHhh
Q 002245 583 GKVF 586 (947)
Q Consensus 583 GR~I 586 (947)
|+.+
T Consensus 225 g~~~ 228 (256)
T 1xqo_A 225 GRAV 228 (256)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8865
No 52
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=53.57 E-value=7.8 Score=34.89 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHhCCCCcHhHHHHHHHH
Q 002245 490 KDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlf 510 (947)
.+.|.+|||||+++|..|+.+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 457999999999999999876
No 53
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=52.37 E-value=8.4 Score=39.53 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.1
Q ss_pred HHHHHhCCCCcHhHHHHHHHHhcC
Q 002245 490 KDYLLSIRGLGLKSVECVRLLTLH 513 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlfafg 513 (947)
...|.+++|||+|+|..||.. |+
T Consensus 72 f~~L~~V~GIGpk~A~~iL~~-f~ 94 (203)
T 1cuk_A 72 FKELIKTNGVGPKLALAILSG-MS 94 (203)
T ss_dssp HHHHHHSSSCCHHHHHHHHHH-SC
T ss_pred HHHHhcCCCcCHHHHHHHHhh-CC
Confidence 457889999999999999875 44
No 54
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=49.28 E-value=19 Score=41.13 Aligned_cols=72 Identities=25% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHH------------HHHHHHhhCCCChhhhh-cCCch----------
Q 002245 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDF------------LNRLVREHGSIDLEWLR-DVPPD---------- 487 (947)
Q Consensus 431 ~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~l------------A~~Lve~yGgiDLe~L~-~vP~d---------- 487 (947)
+-+..++.++++++| +.+||+..|...|+.+ |..+.++||.+ ..+. .+|.+
T Consensus 538 ygs~savr~~pv~el----relg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~--~~~~~~~~~~~l~~~g~~~~ 611 (685)
T 4gfj_A 538 YGSASAVRRLPVEEL----RELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSL--KEIGRRLSYDDLLELGATPK 611 (685)
T ss_dssp SSCHHHHHHSCHHHH----HTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSS--TGGGGSCGGGCCSSSCCGGG
T ss_pred hccHHHHHhccHHHH----HHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccH--HHHhhcCCHHHHhccCCCHH
Confidence 457889999999997 4599999988888754 45555666652 1111 11221
Q ss_pred -------HHHHHHHhCCCCcHhHHHHHH
Q 002245 488 -------KAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 488 -------eareeLlsLPGVG~KTAd~IL 508 (947)
-+.+.|+.+.||||+.|+-++
T Consensus 612 ~~~eik~p~~k~ll~~~gv~p~la~r~~ 639 (685)
T 4gfj_A 612 AAAEIKGPEFKFLLNIEGVGPKLAERIL 639 (685)
T ss_dssp C---------------------------
T ss_pred HHHHhcChhHHHhhcccCCCHHHHHHHH
Confidence 235667777777777776553
No 55
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=47.84 E-value=7.3 Score=40.41 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=19.0
Q ss_pred HHHHHhCCCCcHhHHHHHHHH
Q 002245 490 KDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlf 510 (947)
.++|..|||||+++|..|+.+
T Consensus 131 ~~eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 131 MHQLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp SBGGGGSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 567999999999999999977
No 56
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=47.62 E-value=12 Score=32.92 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHhcC
Q 002245 489 AKDYLLSIRGLGLKSVECVRLLTLH 513 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlfafg 513 (947)
....|..+||||+++|..++.. ||
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~-fg 40 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTT-FG 40 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHH-TC
T ss_pred HHHHHHcCCCCCHHHHHHHHHH-CC
Confidence 3567889999999999988864 55
No 57
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=47.48 E-value=27 Score=40.03 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=48.8
Q ss_pred CCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHH---HHhhCCCChhhhhcCCc--hHH-------HHHHHhCC
Q 002245 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRL---VREHGSIDLEWLRDVPP--DKA-------KDYLLSIR 497 (947)
Q Consensus 430 ~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~L---ve~yGgiDLe~L~~vP~--dea-------reeLlsLP 497 (947)
...+|++|..|=+-.|..+-..-|...--|..+...+... ...-..+..+.|+.+|. ++. ...|.+||
T Consensus 395 R~IhPNAIRGAveiqLASLAvkfG~g~eTAe~L~~~agr~l~leqi~rdrEvgkL~SVpGikek~sktL~eqeamLtAIa 474 (685)
T 4gfj_A 395 GRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIR 474 (685)
T ss_dssp TSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHSTTHHHHHTST
T ss_pred CCCCHHHHhhhHhhhhhhhhhhcCCchHHHHHHHHHhcchhhhhhhhhhhhhhcccccccchhhhhcccccceeeeeccC
Confidence 3567777777655556665555677765666665555441 11011133445666665 322 25788999
Q ss_pred CCcHhHHHHHHHH
Q 002245 498 GLGLKSVECVRLL 510 (947)
Q Consensus 498 GVG~KTAd~ILlf 510 (947)
|||+.+|.-+|-.
T Consensus 475 GIGp~tAeRLLEk 487 (685)
T 4gfj_A 475 GIDRERAERLLKK 487 (685)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999887643
No 58
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=47.02 E-value=15 Score=40.96 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=30.1
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCCC-ChhhhhcCCchHHHHHHHhCCCCcHhHHHHHH
Q 002245 453 GMNNMLAERMKDFLNRLVREHGSI-DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 453 Gfyn~KAk~Ik~lA~~Lve~yGgi-DLe~L~~vP~deareeLlsLPGVG~KTAd~IL 508 (947)
|.-..-|+.|.++.. .|.+ -|+.|+.=+.......|++++|||+|||..+-
T Consensus 87 GIG~~ia~kI~E~l~-----tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly 138 (381)
T 1jms_A 87 CLGDKVKSIIEGIIE-----DGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWF 138 (381)
T ss_dssp SCCHHHHHHHHHHHH-----HSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH-----cCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHH
Confidence 444455555555443 2332 23334321223447889999999999998773
No 59
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=46.38 E-value=4.2 Score=48.24 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 466 LNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 466 A~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
++.|.+.||. ++.|...+ .++|.+++|||+++|..|..|
T Consensus 542 ak~La~~Fgs--le~L~~As----~eeL~~I~GIG~~~A~sI~~f 580 (615)
T 3sgi_A 542 ARALATEFGS--LDAIAAAS----TDQLAAVEGVGPTIAAAVTEW 580 (615)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHcCC--HHHHHhCC----HHHHhhCCCCCHHHHHHHHHH
Confidence 3444555554 44554432 468999999999999988766
No 60
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=44.43 E-value=7.4 Score=33.41 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.6
Q ss_pred HHHHHhCCCCcHhHHHHHHHHhcC
Q 002245 490 KDYLLSIRGLGLKSVECVRLLTLH 513 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlfafg 513 (947)
...|..+||||+++|..++.. ||
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fg 45 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MG 45 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HS
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cC
Confidence 345889999999999988765 55
No 61
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=43.89 E-value=14 Score=32.66 Aligned_cols=25 Identities=4% Similarity=0.150 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHhcCC
Q 002245 489 AKDYLLSIRGLGLKSVECVRLLTLHH 514 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlfafgr 514 (947)
....|..+||||+++|..++.. ||-
T Consensus 30 ~~~~L~~IpgIG~~~A~~Ll~~-fgs 54 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLTT-FGS 54 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HSS
T ss_pred HHHHHHcCCCCCHHHHHHHHHH-CCC
Confidence 3556889999999999988764 553
No 62
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=43.16 E-value=24 Score=30.36 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=32.3
Q ss_pred CCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 002245 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNR 468 (947)
Q Consensus 430 ~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~ 468 (947)
++.|.++|+.++.++|..+ .|+...||..|+..|+.
T Consensus 27 Gi~TvedlA~~~~~eL~~i---~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 27 GVCTLEDLAEQGIDDLADI---EGLTDEKAGALIMAARN 62 (70)
T ss_dssp TCCSHHHHHTSCHHHHHTS---SSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHcCCHHHHHHc---cCCCHHHHHHHHHHHHH
Confidence 5779999999999999774 59999999999999987
No 63
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=42.59 E-value=13 Score=30.87 Aligned_cols=25 Identities=0% Similarity=-0.117 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHhcCC
Q 002245 489 AKDYLLSIRGLGLKSVECVRLLTLHH 514 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlfafgr 514 (947)
....|..+||||+++|..++.. ||-
T Consensus 12 ~~~~L~~i~giG~~~a~~Ll~~-fgs 36 (75)
T 1x2i_A 12 QRLIVEGLPHVSATLARRLLKH-FGS 36 (75)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HCS
T ss_pred HHHHHcCCCCCCHHHHHHHHHH-cCC
Confidence 3556889999999999988864 553
No 64
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=41.77 E-value=23 Score=38.76 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=30.4
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCCCChhhhhcC-CchHHHHHHHhCCCCcHhHHHHHH
Q 002245 453 GMNNMLAERMKDFLNRLVREHGSIDLEWLRDV-PPDKAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 453 Gfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~v-P~deareeLlsLPGVG~KTAd~IL 508 (947)
|.-...|+.|.++.. .|. +..|.++ +...+.+.|.+++|||+|||..+-
T Consensus 64 GIG~~~A~kI~E~l~-----tG~--~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 64 GIGKRMAEKIIEILE-----SGH--LRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp TCCHHHHHHHHHHHH-----SSS--CGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHH-----cCC--chHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 555667777776543 244 3333333 112256666799999999998763
No 65
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=41.62 E-value=8.4 Score=35.45 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=18.0
Q ss_pred HHHHHhCCCCcHhHHHHHHH
Q 002245 490 KDYLLSIRGLGLKSVECVRL 509 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILl 509 (947)
.++|..|||||+++|..|..
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHHH
Confidence 45799999999999999987
No 66
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=41.26 E-value=5.6 Score=41.94 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHhCCCCcHhHHHHHHHHhcCCceeecchHHHHHHHHhCCC
Q 002245 490 KDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWV 533 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILlfafgrpafPVDTHV~RVl~RLGlv 533 (947)
...|..|||||+++|..++..+|+-..-.......++..--|+.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG 57 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIG 57 (241)
T ss_dssp --------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCC
Confidence 45788999999999999887756543111333334444433443
No 67
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=40.59 E-value=19 Score=40.35 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=30.4
Q ss_pred HHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHH
Q 002245 465 FLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 465 lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~IL 508 (947)
+++.|++.||. ++.+..-+ .++|.++.|||.+.|..|.
T Consensus 327 iae~Lv~~FGs--Lq~Il~AS----~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFKT--LDQISKAS----VEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHCS--HHHHTTCC----HHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhCC--HHHHHhCC----HHHHHhccCccHHHHHHHH
Confidence 58899999986 66665544 6689999999999998764
No 68
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=39.06 E-value=10 Score=36.99 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=17.3
Q ss_pred HHHHHhCCCCcHhHHHHHH
Q 002245 490 KDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~IL 508 (947)
.++|.+|||||++.|..|.
T Consensus 62 ~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 4579999999999999998
No 69
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=30.30 E-value=44 Score=40.82 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHhcCCc-eee
Q 002245 440 ANVKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLTLHHL-AFP 518 (947)
Q Consensus 440 A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfafgrp-afP 518 (947)
|+.++|.. -.|+...+|+.|++. .+.+|+| .+ ++.|..++|||+++.+-+.-|..=.. ..|
T Consensus 505 As~~~L~~---v~GiG~~~A~~Iv~y----R~~~G~f---------~s--r~~L~~V~giG~k~~ekl~~FL~i~G~~~p 566 (785)
T 3bzc_A 505 ASAALLAR---ISGLNSTLAQNIVAH----RDANGAF---------RT--RDELKKVSRLGEKTFEQAAGFLRVMNGDNP 566 (785)
T ss_dssp CCHHHHHT---STTCCHHHHHHHHHH----HHHHCCC---------SS--GGGGGGSTTCCHHHHHHHGGGEECTTSSCG
T ss_pred CCHHHHhh---cCCCCHHHHHHHHHH----HHhcCCC---------CC--HHHHHhcCCCCHHHHHHhhheEEECCcccc
Confidence 45666543 257777899998764 3345664 22 67899999999999988766532211 334
Q ss_pred cch---------HHHHHHHHhCC
Q 002245 519 VDT---------NVGRIAVRLGW 532 (947)
Q Consensus 519 VDT---------HV~RVl~RLGl 532 (947)
.|. -+.+++..+|.
T Consensus 567 LD~t~VHPEsY~~a~kil~~~g~ 589 (785)
T 3bzc_A 567 LDASAVHPETYPLVQRIAADTER 589 (785)
T ss_dssp GGGSSCCGGGHHHHHHHHHHHTC
T ss_pred cccCcCCHHHHHHHHHHHHHcCC
Confidence 443 35577776654
No 70
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=30.05 E-value=90 Score=26.03 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=25.3
Q ss_pred CCCHHHHHcCCHHHHHHHHHhcCCcHHH-HHHHHHHH
Q 002245 431 SLDYEALRCANVKEISEAIKERGMNNML-AERMKDFL 466 (947)
Q Consensus 431 ~pTpeaLa~A~~eELeelIR~lGfyn~K-Ak~Ik~lA 466 (947)
|-++++|.+|+.+||.++ +| ..+ |+.|+++.
T Consensus 24 Fgs~~~i~~As~eeL~~v---ig--~~~~A~~I~~~l 55 (63)
T 2a1j_A 24 VKNIAELAALSQDELTSI---LG--NAANAKQLYDFI 55 (63)
T ss_dssp CSSHHHHHTCCHHHHHHH---HS--CHHHHHHHHHHH
T ss_pred cCCHHHHHHCCHHHHHHH---cC--chHHHHHHHHHH
Confidence 669999999999999997 56 345 88887654
No 71
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=28.70 E-value=59 Score=32.83 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=19.3
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHhcCC
Q 002245 489 AKDYLLSIRGLGLKSVECVRLLTLHH 514 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlfafgr 514 (947)
....|..+||||+++|..++.. ||-
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~-fgs 184 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILER-FGS 184 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH-HSS
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCC
Confidence 3446789999999999988765 453
No 72
>1xg7_A Hypothetical protein; southeast collaboratory for structural genomics, secsg, hyperthermophIle, pyrococcus FU protein structure initiative; 1.88A {Pyrococcus furiosus} SCOP: a.96.1.6
Probab=27.89 E-value=1e+02 Score=32.89 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=70.2
Q ss_pred HHHHHHHHhc----CCcHHHHHHHHHHHHHHHHhhCCCChhhhhcC--CchHHHHHHHhCCCCc--HhH-------HHHH
Q 002245 443 KEISEAIKER----GMNNMLAERMKDFLNRLVREHGSIDLEWLRDV--PPDKAKDYLLSIRGLG--LKS-------VECV 507 (947)
Q Consensus 443 eELeelIR~l----Gfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~v--P~deareeLlsLPGVG--~KT-------Ad~I 507 (947)
+++.+.++.. -+.++|-++|.+++..+.+ +.++.+... .-..+++.|..+-|-. .|| +...
T Consensus 89 ~~~~~Fl~~S~~n~Rl~~~KikRi~k~~~~l~~----L~~~d~~~y~~dl~~l~~~LA~~l~s~~~~KTIVFAvKM~~Ya 164 (250)
T 1xg7_A 89 KAYGEFLPKSKNNRRLIEAKLNRIRKVEGFLST----LTLKDLEGYYKNMKMLWKALIKIMGSREDSKTIVFTVKMFGYA 164 (250)
T ss_dssp HHHHHHTTTCSSCCSSHHHHHHHHHHHHHHHHT----CCHHHHHHHHHTHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHhHHHHHHHHHHHHhCCCCCcceeehHHHHHHHH
Confidence 4566677743 3557899999999765542 333333321 2234567777776665 333 4445
Q ss_pred HHHhcCC--c-----eeecchHHHHHHHHhCCCCCCCCHHHHHHHHHHhcCchHHHHHhhhhhhhcCChhhHHHHHHHHH
Q 002245 508 RLLTLHH--L-----AFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLI 580 (947)
Q Consensus 508 Llfafgr--p-----afPVDTHV~RVl~RLGlv~~k~tpeevEk~Le~llP~~e~Iqk~LW~rlc~ld~~~~~e~H~~LI 580 (947)
+..+||. | -||||.-|..+..++. + ++++ ..|..++....-.+..+...||
T Consensus 165 ~r~~~g~~~p~p~~IpIPvD~Ri~~~T~kl~--~-----~~~~---------------~~W~~Va~~sgIPpLHLDSilW 222 (250)
T 1xg7_A 165 SRIAFSRFIPYPMEIPIPEDLRIKSVTSKLT--Q-----EKPT---------------KFWMKIGQESGVPPLHIDSLIW 222 (250)
T ss_dssp HHHHTTSCCCCCTTSCCCCCHHHHHHHHTTC--S-----SCHH---------------HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCCCCcchHHHHHHHHHhc--h-----hHHH---------------HHHHHHHHhcCCCcceehhHHH
Confidence 5556673 2 6899999999998762 1 1122 2344444333444677888888
Q ss_pred -HHhHh
Q 002245 581 -TFGKV 585 (947)
Q Consensus 581 -~fGR~ 585 (947)
.+|+.
T Consensus 223 ~~lG~~ 228 (250)
T 1xg7_A 223 PLLGNA 228 (250)
T ss_dssp HHHTTC
T ss_pred HHhcCc
Confidence 88875
No 73
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=27.54 E-value=60 Score=28.09 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=34.8
Q ss_pred CCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 002245 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVRE 472 (947)
Q Consensus 430 ~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~ 472 (947)
||-|.+.|+.++.++|.. --||...|+.-|+.-|+.++..
T Consensus 26 Gf~tve~vA~~~~~eL~~---I~G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 26 GFSTLEELAYVPMKELLE---IEGLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp TCCCHHHHHHSCHHHHTT---STTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHcCCHHHHhh---ccCCCHHHHHHHHHHHHHHHHH
Confidence 688999999999999865 3699999999999999988753
No 74
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=27.27 E-value=27 Score=40.67 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCcHhHHHHHHHH
Q 002245 489 AKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlf 510 (947)
....|++++|||+|+|..++.-
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCcCHHHHHHHHHc
Confidence 4678999999999999999874
No 75
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=27.21 E-value=36 Score=32.22 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=18.8
Q ss_pred HHHHHHhCCCCcHhHHHHHHHH
Q 002245 489 AKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlf 510 (947)
+.-.|..|.|||+.+|..|+.-
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~ 35 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAA 35 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHH
T ss_pred eHhhHhhhcCcCHHHHHHHHHH
Confidence 5667999999999999888754
No 76
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.73 E-value=41 Score=33.20 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.7
Q ss_pred HHHHHHhCCCCcHhHHHHHHHH
Q 002245 489 AKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlf 510 (947)
+.-.|..|.|||+.+|..|+.-
T Consensus 21 v~~aLt~I~GIG~~~A~~I~~~ 42 (148)
T 3j20_O 21 LRWALTAIKGIGINFATMVCRV 42 (148)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred ehhhhhhccCcCHHHHHHHHHH
Confidence 5668999999999999888654
No 77
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=24.80 E-value=35 Score=39.64 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCcHhHHHHHH
Q 002245 488 KAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 488 eareeLlsLPGVG~KTAd~IL 508 (947)
+....|++++|||+|||-.++
T Consensus 90 ~~~~~l~~v~GvGpk~A~~~~ 110 (575)
T 3b0x_A 90 RGVLEVMEVPGVGPKTARLLY 110 (575)
T ss_dssp HHHHHHHTSTTTCHHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHH
No 78
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=23.94 E-value=1.5e+02 Score=27.90 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=24.6
Q ss_pred ChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHh
Q 002245 477 DLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511 (947)
Q Consensus 477 DLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfa 511 (947)
+++.+...+ ++.|..++|||..+|+-|+..+
T Consensus 48 Tve~va~a~----~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 48 TVEAVAYAP----KKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp SGGGBTSSB----HHHHHTTTTCSTTHHHHHHHHH
T ss_pred cHHHHHhCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 556665554 5689999999999999988765
No 79
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=23.69 E-value=32 Score=33.92 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=18.1
Q ss_pred HHHHHHhCCCCcHhHHHHHHHH
Q 002245 489 AKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlf 510 (947)
+.-.|..|.|||+.+|..|+.-
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~ 49 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKK 49 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHH
T ss_pred hHhhHhhhcCCCHHHHHHHHHH
Confidence 3446999999999999888754
No 80
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.63 E-value=44 Score=33.18 Aligned_cols=28 Identities=29% Similarity=0.218 Sum_probs=21.4
Q ss_pred cCCch-HHHHHHHhCCCCcHhHHHHHHHH
Q 002245 483 DVPPD-KAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 483 ~vP~d-eareeLlsLPGVG~KTAd~ILlf 510 (947)
++|.+ .+.-.|..|.|||+.+|..|+.-
T Consensus 19 ~i~~~k~v~~ALt~I~GIG~~~A~~I~~~ 47 (152)
T 3iz6_M 19 NVDGKQKIMFALTSIKGVGRRFSNIVCKK 47 (152)
T ss_dssp CCCCSSBHHHHHTTSTTCCHHHHHHHHHH
T ss_pred cCCCCcEeHhhhhhccCcCHHHHHHHHHH
Confidence 34443 35678999999999999888754
No 81
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=23.39 E-value=30 Score=40.29 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHH
Q 002245 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECV 507 (947)
Q Consensus 442 ~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~I 507 (947)
.+.+..+++--|.-..+|+.|+. . |-.+++.|...- ....|.++||||.|||.-|
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~-------~-G~~s~edL~~a~---~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWL-------A-GIDSLERLREAA---ESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHH-------T-TCCSHHHHHHHH---HHTTTTTSTTCCHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHH-------c-CCCCHHHHHHHH---hhCccccCCCCCHHHHHHH
Confidence 44666677767888777776664 2 333555554210 1225788999999999988
No 82
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=23.05 E-value=1.7e+02 Score=31.78 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=59.6
Q ss_pred hcccccccccccccccChHHHHHHHHhccCccccccCcCCCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 002245 391 SKSKKRKADGEKKNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLV 470 (947)
Q Consensus 391 LSaq~~d~~vnk~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lv 470 (947)
--|++.|-++....+|.+..|..+. ...|.+.-.... ..|..+|..-|++---|.-|++-..-|.
T Consensus 314 clarafdgsismiattpyrtlkdvc--------------pdltleeaksvn-rtlatlidehglspdaadeliehfesia 378 (519)
T 2csb_A 314 CLARAFDGSISMIATTPYRTLKDVC--------------PDLTLEEAKSVN-RTLATLIDEHGLSPDAADELIEHFESIA 378 (519)
T ss_dssp HHHHHTTTCHHHHTTSCHHHHHHHC--------------TTCCHHHHHHHC-HHHHHHHHHHCCCHHHHHHHHHHHSSHH
T ss_pred HHHHHhCCceeeeecCcchHhhhcC--------------CcccHHHHHhhh-HHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 3466667666666677777776552 234555543332 3567777778887655544443222211
Q ss_pred HhhCCCChhhhhcC------CchH-------HHHHHHhCCCCcHhHHHHHHHHhcCCc
Q 002245 471 REHGSIDLEWLRDV------PPDK-------AKDYLLSIRGLGLKSVECVRLLTLHHL 515 (947)
Q Consensus 471 e~yGgiDLe~L~~v------P~de-------areeLlsLPGVG~KTAd~ILlfafgrp 515 (947)
--.. -||+.+..| ..+. -..+|.+-.|||+|||+-+| .+||.|
T Consensus 379 gila-tdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerll-rafgnp 434 (519)
T 2csb_A 379 GILA-TDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLL-RAFGNP 434 (519)
T ss_dssp HHHT-SCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHH-HHHSSH
T ss_pred HHHh-ccHHHHHHHHHcccccHHHHHHHHHHHHHHHhhhcccchhHHHHHH-HHhCCH
Confidence 1001 134333211 1110 13467888999999998754 567766
No 83
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=21.19 E-value=52 Score=32.75 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=18.6
Q ss_pred HHHHHHhCCCCcHhHHHHHHHH
Q 002245 489 AKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 489 areeLlsLPGVG~KTAd~ILlf 510 (947)
+.-.|..|+|||+.+|..|+.-
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~ 49 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKV 49 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred EEEeeecccccCHHHHHHHHHH
Confidence 5668999999999999888654
No 84
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.04 E-value=20 Score=37.51 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=0.0
Q ss_pred HHHHHhCCCCcHhHHHHHHH
Q 002245 490 KDYLLSIRGLGLKSVECVRL 509 (947)
Q Consensus 490 reeLlsLPGVG~KTAd~ILl 509 (947)
.++|.++ |||+++|..|..
T Consensus 204 ~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 204 VEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp --------------------
T ss_pred HHHHHHc-CCCHHHHHHHHH
Confidence 4567777 888888877654
No 85
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=20.78 E-value=2.6e+02 Score=29.00 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=51.0
Q ss_pred ccccChHHHHHHHHhccCccccccCcCCCCCHHHHHc---CCHHHHHHHHHh---cC--------CcHHHHHHHHHHHHH
Q 002245 403 KNAIDWESLRKEVQRNSGKQERSRDRMDSLDYEALRC---ANVKEISEAIKE---RG--------MNNMLAERMKDFLNR 468 (947)
Q Consensus 403 ~qnT~W~~L~k~l~~~glk~er~~~~~~~pTpeaLa~---A~~eELeelIR~---lG--------fyn~KAk~Ik~lA~~ 468 (947)
.+...|..+.+.+...|+. .|.+.+|+. ++..++.++++. .| +| .-...+.++++.
T Consensus 138 ~~~~~~~~i~~~~~~~g~~---------pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~-~~~~~~~~~~~~ 207 (258)
T 1lva_A 138 TQKKLLKDLEDKYRVSRWQ---------PPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFY-WHRQALGEAREV 207 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTS---------CCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBE-EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC---------CCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeE-EcHHHHHHHHHH
Confidence 3445688888877654443 678888865 456655554433 34 33 123445555555
Q ss_pred HHH--hhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHH
Q 002245 469 LVR--EHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLL 510 (947)
Q Consensus 469 Lve--~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlf 510 (947)
|.+ .+|.+ ...++|+.| |+|||-|=-+|-|
T Consensus 208 l~~~~~~~~i--------t~a~~Rd~l----g~SRK~aIplLE~ 239 (258)
T 1lva_A 208 IKNLASTGPF--------GLAEARDAL----GSSRKYVLPLLEY 239 (258)
T ss_dssp HHHHHTTSCB--------CHHHHHHHH----TCCHHHHHHHHHH
T ss_pred HHHHHhcCCc--------CHHHHHHHh----CCcHHHHHHHHHH
Confidence 544 35554 444555554 9999999777765
No 86
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=20.58 E-value=29 Score=32.67 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=33.5
Q ss_pred CCCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 002245 430 DSLDYEALRCANVKEISEAIKERGMNNMLAERMKDFLNRLVR 471 (947)
Q Consensus 430 ~~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA~~Lve 471 (947)
++.|.++|+.++.++|.+ -.|+...||..|++.|+.++.
T Consensus 45 G~~Tve~va~a~~~eL~~---i~GIse~ka~kIi~aA~kl~~ 83 (114)
T 1b22_A 45 GFHTVEAVAYAPKKELIN---IKGISEAKADKILAEAAKLVP 83 (114)
T ss_dssp CCSSGGGBTSSBHHHHHT---TTTCSTTHHHHHHHHHHHHSC
T ss_pred CcCcHHHHHhCCHHHHHH---ccCCCHHHHHHHHHHHHHHcc
Confidence 677999999999999865 378888999999999998863
No 87
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=20.53 E-value=1.3e+02 Score=25.75 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=26.3
Q ss_pred CCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHHHHh
Q 002245 474 GSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVRLLT 511 (947)
Q Consensus 474 GgiDLe~L~~vP~deareeLlsLPGVG~KTAd~ILlfa 511 (947)
|-.+++.|...+ .++|..++||+...|+-|..-|
T Consensus 27 Gi~TvedlA~~~----~~eL~~i~gise~kA~~ii~aA 60 (70)
T 1wcn_A 27 GVCTLEDLAEQG----IDDLADIEGLTDEKAGALIMAA 60 (70)
T ss_dssp TCCSHHHHHTSC----HHHHHTSSSCCHHHHHHHHHHH
T ss_pred CCCcHHHHHcCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 444677777766 4589999999999999887654
No 88
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=20.20 E-value=28 Score=40.50 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhCCCChhhhhcCCchHHHHHHHhCCCCcHhHHHHHH
Q 002245 442 VKEISEAIKERGMNNMLAERMKDFLNRLVREHGSIDLEWLRDVPPDKAKDYLLSIRGLGLKSVECVR 508 (947)
Q Consensus 442 ~eELeelIR~lGfyn~KAk~Ik~lA~~Lve~yGgiDLe~L~~vP~deareeLlsLPGVG~KTAd~IL 508 (947)
..+|...+...|+....|. +|.+.||.-.++.|++-|.. |..++|||.||||.|.
T Consensus 7 ~~~~~~~l~~~g~~~~~a~-------~i~~~yg~~~~~~i~~nPy~-----l~~i~gigf~~aD~ia 61 (574)
T 3e1s_A 7 ERRLLAGLQGLGLTINQAQ-------RAVKHFGADALDRLEKDLFT-----LTEVEGIGFLTADKLW 61 (574)
T ss_dssp --------------------------------------------CG-----GGTSSSCCHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHH-------HHHHHHHHHHHHHHHhCCcc-----cCCcCCCCHHHHHHHH
Confidence 3456666777888754444 34445665445566666665 5789999999999764
No 89
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=20.02 E-value=1.8e+02 Score=25.92 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=25.3
Q ss_pred CCCHHHHHcCCHHHHHHHHHhcCCcHHHHHHHHHHH
Q 002245 431 SLDYEALRCANVKEISEAIKERGMNNMLAERMKDFL 466 (947)
Q Consensus 431 ~pTpeaLa~A~~eELeelIR~lGfyn~KAk~Ik~lA 466 (947)
|-++++|..|+.+||.++ +|- ..+|+.|+++.
T Consensus 38 FgSl~~i~~AS~eEL~~v---ig~-~~~A~~I~~~l 69 (84)
T 1z00_B 38 VKNIAELAALSQDELTSI---LGN-AANAKQLYDFI 69 (84)
T ss_dssp SSCHHHHHHSCHHHHHHH---HSC-HHHHHHHHHHH
T ss_pred cCCHHHHHHCCHHHHHHH---hCc-hHHHHHHHHHH
Confidence 679999999999999997 562 23388887755
Done!