Query 002247
Match_columns 947
No_of_seqs 73 out of 75
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 19:49:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.8 1.5E-20 3.2E-25 179.4 10.3 136 9-144 2-141 (143)
2 KOG0161 Myosin class II heavy 99.6 1.8E-08 3.9E-13 129.5 66.8 475 267-809 907-1400(1930)
3 KOG0161 Myosin class II heavy 99.5 8.4E-08 1.8E-12 123.5 64.7 485 413-943 1189-1709(1930)
4 TIGR02168 SMC_prok_B chromosom 99.4 1.2E-07 2.5E-12 116.0 58.4 47 895-941 966-1019(1179)
5 TIGR02169 SMC_prok_A chromosom 99.4 8.7E-07 1.9E-11 109.1 65.2 56 888-943 952-1014(1164)
6 TIGR00606 rad50 rad50. This fa 99.4 5.3E-06 1.2E-10 105.7 69.4 78 486-563 573-652 (1311)
7 COG1196 Smc Chromosome segrega 99.3 4.1E-06 8.9E-11 105.6 61.2 320 601-943 675-1005(1163)
8 KOG4674 Uncharacterized conser 99.3 1.8E-05 3.9E-10 101.6 64.2 263 638-917 932-1245(1822)
9 TIGR02168 SMC_prok_B chromosom 99.2 7.9E-06 1.7E-10 100.3 58.8 42 414-455 380-421 (1179)
10 PRK02224 chromosome segregatio 99.2 7.7E-06 1.7E-10 99.6 56.9 48 262-311 181-228 (880)
11 TIGR02169 SMC_prok_A chromosom 99.1 6E-05 1.3E-09 93.2 57.1 42 893-934 978-1019(1164)
12 PRK02224 chromosome segregatio 99.1 0.00018 4E-09 87.8 60.3 17 31-47 23-39 (880)
13 KOG4674 Uncharacterized conser 99.0 9.8E-05 2.1E-09 95.1 56.9 91 730-820 1241-1339(1822)
14 PRK03918 chromosome segregatio 99.0 0.00028 6E-09 86.0 62.9 8 36-43 26-33 (880)
15 TIGR00606 rad50 rad50. This fa 98.9 0.0008 1.7E-08 86.4 62.3 52 889-940 972-1023(1311)
16 COG1196 Smc Chromosome segrega 98.9 0.00083 1.8E-08 85.4 58.2 232 587-818 675-914 (1163)
17 PF10174 Cast: RIM-binding pro 98.8 0.0011 2.4E-08 81.1 58.6 290 489-808 300-603 (775)
18 KOG4643 Uncharacterized coiled 98.8 0.0018 4E-08 79.5 51.5 477 249-820 172-679 (1195)
19 PRK03918 chromosome segregatio 98.7 0.0038 8.1E-08 76.4 59.1 17 91-109 32-48 (880)
20 PF10174 Cast: RIM-binding pro 98.5 0.0073 1.6E-07 74.1 52.0 138 247-385 231-369 (775)
21 PF05701 WEMBL: Weak chloropla 98.5 0.0024 5.3E-08 75.1 42.8 118 495-630 114-234 (522)
22 PRK01156 chromosome segregatio 98.5 0.0069 1.5E-07 74.8 47.2 85 727-817 524-609 (895)
23 PF07888 CALCOCO1: Calcium bin 98.4 0.0005 1.1E-08 80.8 33.1 91 721-811 353-454 (546)
24 PF01576 Myosin_tail_1: Myosin 98.4 4.7E-08 1E-12 119.5 0.0 225 259-517 9-235 (859)
25 PF07888 CALCOCO1: Calcium bin 98.4 0.0047 1E-07 72.9 40.3 82 719-811 386-467 (546)
26 PF05557 MAD: Mitotic checkpoi 98.3 1.5E-06 3.2E-11 104.7 9.0 152 762-927 477-639 (722)
27 PF00038 Filament: Intermediat 98.2 0.0059 1.3E-07 66.3 33.1 223 487-758 72-295 (312)
28 PRK01156 chromosome segregatio 98.2 0.052 1.1E-06 67.3 61.9 64 248-311 174-240 (895)
29 KOG4673 Transcription factor T 98.2 0.043 9.4E-07 65.9 55.8 96 712-807 853-951 (961)
30 KOG4643 Uncharacterized coiled 98.0 0.057 1.2E-06 67.2 39.1 119 679-802 437-558 (1195)
31 KOG0996 Structural maintenance 98.0 0.033 7.1E-07 70.1 37.6 336 402-793 256-603 (1293)
32 PF05622 HOOK: HOOK protein; 98.0 1.7E-06 3.7E-11 104.0 0.0 204 285-526 196-406 (713)
33 PF05701 WEMBL: Weak chloropla 97.9 0.092 2E-06 62.2 43.6 54 761-814 366-419 (522)
34 PF01576 Myosin_tail_1: Myosin 97.9 2.2E-06 4.9E-11 105.1 -0.0 60 248-307 223-282 (859)
35 KOG0978 E3 ubiquitin ligase in 97.9 0.13 2.8E-06 62.7 53.1 46 331-376 146-191 (698)
36 PF12128 DUF3584: Protein of u 97.8 0.28 6E-06 63.4 63.2 80 617-696 670-750 (1201)
37 PF00038 Filament: Intermediat 97.7 0.041 8.9E-07 59.8 28.6 56 600-655 230-285 (312)
38 KOG0995 Centromere-associated 97.5 0.38 8.1E-06 57.4 34.8 152 417-580 225-379 (581)
39 PF12128 DUF3584: Protein of u 97.5 0.73 1.6E-05 59.7 54.0 31 83-114 80-114 (1201)
40 PF05557 MAD: Mitotic checkpoi 97.5 4.9E-05 1.1E-09 91.7 2.5 347 414-817 62-428 (722)
41 KOG0996 Structural maintenance 97.5 0.71 1.5E-05 58.9 51.5 130 671-820 907-1044(1293)
42 PF05483 SCP-1: Synaptonemal c 97.4 0.59 1.3E-05 56.8 53.6 179 474-663 231-442 (786)
43 PF05622 HOOK: HOOK protein; 97.2 9.4E-05 2E-09 89.3 0.0 118 423-543 182-305 (713)
44 COG0419 SbcC ATPase involved i 97.2 1.3 2.9E-05 55.7 62.4 24 762-785 690-713 (908)
45 KOG0977 Nuclear envelope prote 97.1 1.1 2.5E-05 53.6 33.6 333 419-821 41-382 (546)
46 KOG0933 Structural maintenance 97.1 1.6 3.5E-05 55.1 50.9 209 598-825 675-887 (1174)
47 PF15070 GOLGA2L5: Putative go 97.1 1.3 2.8E-05 54.0 39.9 153 413-614 22-174 (617)
48 KOG1029 Endocytic adaptor prot 96.9 1.3 2.8E-05 54.6 30.9 133 605-755 435-572 (1118)
49 KOG0964 Structural maintenance 96.9 1.1 2.3E-05 56.5 30.5 278 519-815 188-501 (1200)
50 PF09789 DUF2353: Uncharacteri 96.9 0.076 1.7E-06 59.6 19.5 181 424-627 13-216 (319)
51 PHA02562 46 endonuclease subun 96.8 0.11 2.3E-06 60.8 21.1 58 762-819 332-389 (562)
52 KOG0971 Microtubule-associated 96.8 2.4 5.3E-05 53.1 33.6 272 483-804 224-506 (1243)
53 PHA02562 46 endonuclease subun 96.8 0.65 1.4E-05 54.3 27.0 24 674-697 258-281 (562)
54 PRK04778 septation ring format 96.6 2.6 5.7E-05 50.6 41.8 119 483-637 112-235 (569)
55 KOG4807 F-actin binding protei 96.6 0.85 1.9E-05 52.5 24.5 127 557-745 413-539 (593)
56 KOG0612 Rho-associated, coiled 96.5 4.5 9.8E-05 52.3 46.0 72 592-663 699-776 (1317)
57 KOG0933 Structural maintenance 96.5 4.2 9.1E-05 51.7 52.5 220 420-654 677-900 (1174)
58 KOG0250 DNA repair protein RAD 96.4 3.4 7.4E-05 52.8 30.7 132 630-784 321-453 (1074)
59 PF13851 GAS: Growth-arrest sp 96.4 1.7 3.6E-05 46.0 24.9 107 441-572 9-115 (201)
60 PF09726 Macoilin: Transmembra 96.4 2.4 5.2E-05 52.4 28.7 177 493-692 470-657 (697)
61 PF09730 BicD: Microtubule-ass 96.3 4.6 9.9E-05 50.2 41.7 147 485-643 259-409 (717)
62 COG0419 SbcC ATPase involved i 96.2 5.4 0.00012 50.4 60.4 64 246-310 184-253 (908)
63 KOG4593 Mitotic checkpoint pro 96.2 4.7 0.0001 49.5 52.1 166 494-663 255-453 (716)
64 PRK11637 AmiB activator; Provi 96.2 0.87 1.9E-05 52.5 22.8 24 673-696 105-128 (428)
65 KOG0018 Structural maintenance 96.1 6.7 0.00014 50.3 32.6 279 411-751 650-948 (1141)
66 KOG0976 Rho/Rac1-interacting s 96.1 6 0.00013 49.3 46.6 27 350-376 104-130 (1265)
67 PRK09039 hypothetical protein; 96.0 0.46 9.9E-06 53.8 19.0 148 412-577 52-199 (343)
68 PF00261 Tropomyosin: Tropomyo 96.0 2.9 6.3E-05 44.9 23.9 148 485-648 10-157 (237)
69 KOG0999 Microtubule-associated 96.0 1.6 3.6E-05 52.1 23.4 223 598-863 6-253 (772)
70 KOG0964 Structural maintenance 96.0 7.5 0.00016 49.5 49.1 468 272-805 255-871 (1200)
71 PF09730 BicD: Microtubule-ass 95.9 6.9 0.00015 48.7 36.4 100 670-784 358-464 (717)
72 PRK11637 AmiB activator; Provi 95.7 5.5 0.00012 46.0 27.6 23 629-651 202-224 (428)
73 TIGR03185 DNA_S_dndD DNA sulfu 95.7 7.5 0.00016 47.4 35.7 81 483-563 209-289 (650)
74 KOG0971 Microtubule-associated 95.6 10 0.00022 48.1 48.4 139 641-809 460-598 (1243)
75 PF09726 Macoilin: Transmembra 95.6 6.1 0.00013 49.0 27.3 68 726-800 588-655 (697)
76 KOG0612 Rho-associated, coiled 95.6 12 0.00026 48.7 51.8 111 496-617 699-814 (1317)
77 PF12718 Tropomyosin_1: Tropom 95.4 0.1 2.2E-06 52.3 10.0 130 765-927 12-141 (143)
78 COG1579 Zn-ribbon protein, pos 95.3 0.23 4.9E-06 54.0 12.6 75 744-818 8-82 (239)
79 PF05010 TACC: Transforming ac 95.3 5.1 0.00011 43.0 23.9 157 495-663 28-192 (207)
80 PRK09039 hypothetical protein; 95.3 0.18 3.9E-06 56.9 12.4 142 637-808 44-185 (343)
81 PF09728 Taxilin: Myosin-like 95.1 7.3 0.00016 43.8 27.2 182 568-776 107-302 (309)
82 PF14662 CCDC155: Coiled-coil 95.0 6.1 0.00013 42.1 21.6 169 572-799 19-190 (193)
83 PRK04863 mukB cell division pr 94.9 21 0.00046 48.0 45.2 49 646-694 554-602 (1486)
84 PF05667 DUF812: Protein of un 94.4 2.2 4.7E-05 51.9 18.9 75 751-825 410-484 (594)
85 PF05483 SCP-1: Synaptonemal c 94.2 20 0.00043 44.5 59.1 180 435-617 416-597 (786)
86 KOG0946 ER-Golgi vesicle-tethe 94.0 23 0.0005 44.7 26.3 166 558-752 709-882 (970)
87 KOG0946 ER-Golgi vesicle-tethe 93.9 5.1 0.00011 50.0 20.3 70 580-657 616-685 (970)
88 KOG4673 Transcription factor T 93.8 23 0.0005 44.0 48.9 78 735-813 707-784 (961)
89 PF15397 DUF4618: Domain of un 93.8 13 0.00029 41.2 27.6 215 519-787 17-234 (258)
90 cd08389 C2A_Synaptotagmin-14_1 93.6 0.15 3.2E-06 48.9 5.9 95 21-123 24-123 (124)
91 PF10473 CENP-F_leu_zip: Leuci 93.4 8.5 0.00018 39.1 18.1 137 420-581 3-139 (140)
92 KOG0977 Nuclear envelope prote 93.3 25 0.00053 42.8 35.4 145 514-701 245-389 (546)
93 KOG0250 DNA repair protein RAD 93.3 34 0.00074 44.4 52.2 107 671-789 654-770 (1074)
94 KOG0994 Extracellular matrix g 93.2 37 0.00079 44.5 39.4 42 414-455 1247-1288(1758)
95 PF15619 Lebercilin: Ciliary p 93.2 3 6.5E-05 44.1 15.1 131 726-856 55-187 (194)
96 PF06160 EzrA: Septation ring 93.0 27 0.00058 42.3 40.0 251 502-785 92-369 (560)
97 PF00261 Tropomyosin: Tropomyo 92.9 15 0.00033 39.4 26.4 56 570-629 171-226 (237)
98 PF04849 HAP1_N: HAP1 N-termin 92.9 7.4 0.00016 44.0 18.4 81 715-795 217-304 (306)
99 PF04849 HAP1_N: HAP1 N-termin 92.8 21 0.00045 40.6 23.7 213 344-627 74-303 (306)
100 COG1579 Zn-ribbon protein, pos 92.4 7.9 0.00017 42.4 17.4 100 724-825 88-191 (239)
101 COG1340 Uncharacterized archae 92.4 23 0.0005 40.0 29.8 106 405-524 143-248 (294)
102 TIGR03185 DNA_S_dndD DNA sulfu 92.2 35 0.00076 41.8 36.5 46 484-529 422-467 (650)
103 PF09728 Taxilin: Myosin-like 92.2 24 0.00052 39.8 31.9 280 491-812 16-302 (309)
104 PRK04863 mukB cell division pr 91.9 61 0.0013 43.9 52.1 263 489-752 785-1101(1486)
105 PF15619 Lebercilin: Ciliary p 91.6 21 0.00046 37.9 21.5 142 282-449 12-154 (194)
106 PF10473 CENP-F_leu_zip: Leuci 91.4 10 0.00023 38.5 15.7 61 730-790 57-117 (140)
107 KOG0976 Rho/Rac1-interacting s 90.8 57 0.0012 41.4 42.3 137 619-784 264-403 (1265)
108 KOG4593 Mitotic checkpoint pro 90.8 53 0.0011 41.0 42.4 156 432-616 78-233 (716)
109 PF12718 Tropomyosin_1: Tropom 90.6 21 0.00045 36.1 17.1 86 417-513 18-103 (143)
110 KOG0980 Actin-binding protein 90.6 61 0.0013 41.5 24.3 154 573-750 331-484 (980)
111 PF07111 HCR: Alpha helical co 90.4 57 0.0012 40.8 28.9 251 499-819 61-337 (739)
112 KOG0978 E3 ubiquitin ligase in 90.1 61 0.0013 40.6 54.5 92 729-820 437-535 (698)
113 smart00787 Spc7 Spc7 kinetocho 89.8 25 0.00055 39.8 18.8 134 429-583 153-286 (312)
114 cd08682 C2_Rab11-FIP_classI C2 89.8 0.78 1.7E-05 43.6 6.1 109 21-136 7-126 (126)
115 PF15070 GOLGA2L5: Putative go 89.5 63 0.0014 40.0 42.5 48 247-294 15-62 (617)
116 PRK11281 hypothetical protein; 88.9 80 0.0017 41.7 24.4 182 530-750 67-252 (1113)
117 cd04043 C2_Munc13_fungal C2 do 88.8 2.8 6.1E-05 39.5 9.0 110 19-140 7-123 (126)
118 PF02183 HALZ: Homeobox associ 88.6 1.3 2.7E-05 36.9 5.7 43 765-807 3-45 (45)
119 KOG1029 Endocytic adaptor prot 88.6 81 0.0018 40.1 32.8 116 433-552 485-604 (1118)
120 KOG2129 Uncharacterized conser 88.4 61 0.0013 38.4 22.4 197 242-438 37-271 (552)
121 PF05911 DUF869: Plant protein 87.9 89 0.0019 39.7 26.5 158 425-590 594-762 (769)
122 PF08317 Spc7: Spc7 kinetochor 87.9 53 0.0011 37.1 25.0 81 499-583 211-291 (325)
123 TIGR01005 eps_transp_fam exopo 87.4 65 0.0014 40.0 21.7 102 417-530 234-335 (754)
124 PRK04778 septation ring format 87.2 79 0.0017 38.4 45.5 54 730-783 446-499 (569)
125 TIGR03017 EpsF chain length de 87.1 58 0.0012 37.5 19.8 57 483-539 254-310 (444)
126 cd04033 C2_NEDD4_NEDD4L C2 dom 87.0 2.9 6.2E-05 39.8 8.0 56 83-138 67-133 (133)
127 cd08376 C2B_MCTP_PRT C2 domain 86.7 1.8 3.9E-05 40.2 6.3 51 83-136 61-113 (116)
128 PF07106 TBPIP: Tat binding pr 86.5 5.9 0.00013 40.3 10.3 93 717-809 71-166 (169)
129 cd04052 C2B_Tricalbin-like C2 86.4 1.2 2.6E-05 41.7 5.0 55 82-137 53-108 (111)
130 COG5185 HEC1 Protein involved 86.0 88 0.0019 37.7 23.6 94 596-701 267-360 (622)
131 KOG4809 Rab6 GTPase-interactin 85.7 97 0.0021 37.9 35.3 68 427-508 331-398 (654)
132 PF09789 DUF2353: Uncharacteri 85.5 26 0.00057 40.0 15.5 83 477-560 127-213 (319)
133 PF15066 CAGE1: Cancer-associa 85.4 54 0.0012 39.3 18.3 107 675-814 359-465 (527)
134 PF11559 ADIP: Afadin- and alp 85.0 19 0.0004 36.0 12.8 31 665-695 46-76 (151)
135 PF05266 DUF724: Protein of un 85.0 3 6.4E-05 44.0 7.5 98 680-786 88-185 (190)
136 PF03148 Tektin: Tektin family 84.4 87 0.0019 36.3 29.4 269 519-811 54-368 (384)
137 PF12325 TMF_TATA_bd: TATA ele 84.2 28 0.00061 34.5 13.4 45 732-776 68-112 (120)
138 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.9 47 0.001 32.8 17.0 27 478-504 54-80 (132)
139 KOG4687 Uncharacterized coiled 83.8 84 0.0018 35.6 19.2 179 424-626 34-244 (389)
140 KOG0962 DNA repair protein RAD 83.7 1.7E+02 0.0038 39.2 50.6 62 716-777 1013-1079(1294)
141 PF08317 Spc7: Spc7 kinetochor 83.6 26 0.00056 39.5 14.5 18 796-814 277-294 (325)
142 PF09304 Cortex-I_coil: Cortex 82.9 21 0.00046 35.0 11.6 91 725-815 9-99 (107)
143 cd08391 C2A_C2C_Synaptotagmin_ 82.5 3.8 8.3E-05 37.9 6.5 52 83-136 68-120 (121)
144 KOG0999 Microtubule-associated 82.3 1.3E+02 0.0029 36.9 49.4 174 245-460 6-182 (772)
145 cd08388 C2A_Synaptotagmin-4-11 82.2 1.4 3.1E-05 42.5 3.6 61 63-123 64-127 (128)
146 PF06160 EzrA: Septation ring 82.0 1.3E+02 0.0028 36.6 46.5 317 478-824 103-436 (560)
147 PF10234 Cluap1: Clusterin-ass 81.9 21 0.00046 39.8 12.8 90 415-525 171-260 (267)
148 PF06818 Fez1: Fez1; InterPro 80.7 51 0.0011 35.6 14.6 30 512-541 132-168 (202)
149 PF10186 Atg14: UV radiation r 80.0 45 0.00099 35.8 14.4 27 673-699 22-48 (302)
150 KOG1899 LAR transmembrane tyro 79.8 1.6E+02 0.0034 36.8 19.6 104 539-648 191-313 (861)
151 PF09738 DUF2051: Double stran 79.6 40 0.00087 38.2 14.2 34 346-379 213-246 (302)
152 PF13166 AAA_13: AAA domain 79.3 1.6E+02 0.0036 36.0 22.2 105 715-821 367-471 (712)
153 KOG4460 Nuclear pore complex, 79.0 54 0.0012 40.0 15.4 137 413-584 588-725 (741)
154 PF14197 Cep57_CLD_2: Centroso 78.9 14 0.00031 33.3 8.5 62 247-308 5-66 (69)
155 PF08614 ATG16: Autophagy prot 78.7 16 0.00035 38.2 10.1 82 721-802 105-186 (194)
156 cd08373 C2A_Ferlin C2 domain f 78.5 5 0.00011 38.1 5.9 61 82-143 56-121 (127)
157 cd04042 C2A_MCTP_PRT C2 domain 78.4 4.9 0.00011 37.8 5.8 104 21-137 8-119 (121)
158 PRK12704 phosphodiesterase; Pr 78.4 1.2E+02 0.0026 36.9 18.4 66 631-700 81-146 (520)
159 PF10146 zf-C4H2: Zinc finger- 77.9 32 0.0007 37.5 12.4 25 758-782 79-103 (230)
160 TIGR03007 pepcterm_ChnLen poly 77.9 1.5E+02 0.0033 34.8 19.2 99 414-532 198-296 (498)
161 TIGR00634 recN DNA repair prot 77.6 1.7E+02 0.0038 35.4 24.0 105 505-625 267-371 (563)
162 cd08680 C2_Kibra C2 domain fou 77.2 3.3 7.2E-05 40.3 4.4 72 34-113 40-115 (124)
163 KOG1853 LIS1-interacting prote 76.9 65 0.0014 36.1 14.2 90 647-741 67-156 (333)
164 cd08521 C2A_SLP C2 domain firs 76.8 6.7 0.00015 36.6 6.2 83 19-110 20-112 (123)
165 cd04014 C2_PKC_epsilon C2 doma 76.6 5 0.00011 38.4 5.4 56 81-139 72-130 (132)
166 smart00787 Spc7 Spc7 kinetocho 76.3 1.3E+02 0.0028 34.3 17.0 54 760-814 232-289 (312)
167 PF06548 Kinesin-related: Kine 76.2 44 0.00096 39.8 13.5 164 248-424 296-484 (488)
168 cd04022 C2A_MCTP_PRT_plant C2 76.2 5.7 0.00012 37.8 5.6 54 82-136 63-124 (127)
169 PF04111 APG6: Autophagy prote 76.1 30 0.00064 39.1 12.0 86 724-809 42-134 (314)
170 TIGR01010 BexC_CtrB_KpsE polys 76.0 1.3E+02 0.0028 34.0 17.1 96 430-537 173-268 (362)
171 PF04156 IncA: IncA protein; 76.0 52 0.0011 33.8 12.8 96 715-810 85-180 (191)
172 PF12795 MscS_porin: Mechanose 75.9 1.2E+02 0.0026 32.7 19.1 183 530-753 25-213 (240)
173 cd04036 C2_cPLA2 C2 domain pre 75.6 8.8 0.00019 36.0 6.7 50 84-135 65-115 (119)
174 PF08614 ATG16: Autophagy prot 75.5 14 0.00031 38.5 8.8 89 418-506 93-181 (194)
175 cd04044 C2A_Tricalbin-like C2 75.4 7.7 0.00017 36.1 6.2 75 54-138 45-123 (124)
176 KOG4438 Centromere-associated 75.4 1.5E+02 0.0033 35.4 17.4 182 613-813 127-358 (446)
177 COG4942 Membrane-bound metallo 75.1 1.9E+02 0.0041 34.5 26.5 66 486-555 41-106 (420)
178 COG4942 Membrane-bound metallo 75.0 1.9E+02 0.0041 34.5 24.3 89 441-543 38-126 (420)
179 cd08685 C2_RGS-like C2 domain 74.8 4.4 9.5E-05 38.8 4.5 83 20-111 19-109 (119)
180 PF04156 IncA: IncA protein; 74.6 94 0.002 31.9 14.3 64 484-547 82-148 (191)
181 PF00170 bZIP_1: bZIP transcri 74.3 9.2 0.0002 33.2 5.9 38 421-458 27-64 (64)
182 KOG0963 Transcription factor/C 74.1 2.4E+02 0.0051 35.2 39.2 75 594-692 250-324 (629)
183 cd04024 C2A_Synaptotagmin-like 74.1 5.8 0.00013 37.2 5.0 98 19-125 7-110 (128)
184 PF12325 TMF_TATA_bd: TATA ele 73.8 34 0.00074 34.0 10.3 69 724-803 43-111 (120)
185 TIGR00634 recN DNA repair prot 73.5 2.2E+02 0.0047 34.6 24.9 257 489-809 132-396 (563)
186 TIGR01843 type_I_hlyD type I s 73.1 1.7E+02 0.0036 33.0 19.4 12 605-616 86-97 (423)
187 KOG0980 Actin-binding protein 73.1 2.9E+02 0.0063 35.8 36.9 70 237-310 324-393 (980)
188 PLN03188 kinesin-12 family pro 73.1 1.6E+02 0.0034 39.4 18.3 109 248-359 1066-1194(1320)
189 cd08393 C2A_SLP-1_2 C2 domain 72.7 9.5 0.00021 36.6 6.2 93 21-122 23-124 (125)
190 cd08375 C2_Intersectin C2 doma 72.7 13 0.00027 36.6 7.1 107 19-135 21-133 (136)
191 cd04030 C2C_KIAA1228 C2 domain 72.3 15 0.00033 34.5 7.4 96 19-122 22-126 (127)
192 cd08401 C2A_RasA2_RasA3 C2 dom 72.3 7.6 0.00017 37.2 5.4 102 20-136 7-120 (121)
193 KOG0962 DNA repair protein RAD 72.2 3.6E+02 0.0078 36.5 59.2 45 896-942 1010-1054(1294)
194 cd04040 C2D_Tricalbin-like C2 71.8 6.8 0.00015 36.2 4.8 43 83-126 61-105 (115)
195 COG3883 Uncharacterized protei 71.6 1.8E+02 0.0039 32.8 18.3 60 735-794 158-217 (265)
196 cd04035 C2A_Rabphilin_Doc2 C2 71.5 13 0.00029 34.9 6.8 87 20-112 22-114 (123)
197 PF04111 APG6: Autophagy prote 71.5 36 0.00078 38.5 11.2 59 724-782 70-128 (314)
198 TIGR03319 YmdA_YtgF conserved 71.1 2.3E+02 0.005 34.4 18.4 31 633-663 77-107 (514)
199 COG5185 HEC1 Protein involved 70.6 2.6E+02 0.0055 34.1 34.2 79 736-814 530-620 (622)
200 cd04020 C2B_SLP_1-2-3-4 C2 dom 70.5 17 0.00036 36.9 7.6 87 19-111 33-126 (162)
201 cd04031 C2A_RIM1alpha C2 domai 70.1 13 0.00029 34.7 6.5 30 79-108 81-112 (125)
202 KOG0963 Transcription factor/C 70.1 2.9E+02 0.0063 34.5 33.9 115 412-543 234-351 (629)
203 cd04051 C2_SRC2_like C2 domain 69.9 8.6 0.00019 36.2 5.2 73 56-132 44-124 (125)
204 PRK08476 F0F1 ATP synthase sub 69.9 95 0.0021 31.1 12.6 45 521-565 30-74 (141)
205 PF06005 DUF904: Protein of un 69.5 51 0.0011 30.1 9.6 48 414-461 5-52 (72)
206 PF07200 Mod_r: Modifier of ru 69.3 82 0.0018 31.3 12.1 62 474-536 60-121 (150)
207 cd04019 C2C_MCTP_PRT_plant C2 68.8 17 0.00037 36.4 7.2 111 20-139 7-133 (150)
208 PF07798 DUF1640: Protein of u 68.7 1.1E+02 0.0023 31.8 13.1 44 264-313 54-97 (177)
209 cd04048 C2A_Copine C2 domain f 68.5 18 0.0004 34.0 7.0 98 15-122 2-112 (120)
210 PF10212 TTKRSYEDQ: Predicted 68.4 89 0.0019 38.0 13.9 62 624-692 412-476 (518)
211 COG1340 Uncharacterized archae 68.0 2.3E+02 0.0049 32.5 32.4 76 565-655 104-181 (294)
212 PF10481 CENP-F_N: Cenp-F N-te 67.9 1E+02 0.0022 35.0 13.2 65 753-817 39-103 (307)
213 PF00769 ERM: Ezrin/radixin/mo 67.7 2E+02 0.0043 31.7 16.3 115 487-623 9-126 (246)
214 cd04026 C2_PKC_alpha_gamma C2 67.6 9.8 0.00021 36.2 5.1 105 19-133 19-130 (131)
215 PF06818 Fez1: Fez1; InterPro 67.5 39 0.00084 36.5 9.8 98 712-809 39-152 (202)
216 KOG4360 Uncharacterized coiled 67.1 1.4E+02 0.0029 36.5 14.8 34 761-794 269-302 (596)
217 cd08681 C2_fungal_Inn1p-like C 66.1 13 0.00028 34.6 5.4 104 19-136 7-117 (118)
218 cd08387 C2A_Synaptotagmin-8 C2 65.8 8.3 0.00018 36.4 4.2 46 77-123 76-123 (124)
219 PF10481 CENP-F_N: Cenp-F N-te 65.5 1.4E+02 0.0031 33.9 13.8 122 678-818 18-139 (307)
220 PF05667 DUF812: Protein of un 65.0 3.5E+02 0.0077 33.6 30.9 46 485-530 337-382 (594)
221 TIGR03007 pepcterm_ChnLen poly 64.8 2.9E+02 0.0062 32.6 23.0 63 718-784 317-379 (498)
222 PF13851 GAS: Growth-arrest sp 64.8 2E+02 0.0043 30.7 22.0 36 431-466 31-66 (201)
223 KOG0995 Centromere-associated 64.7 3.5E+02 0.0077 33.5 38.7 140 481-620 344-505 (581)
224 PLN02939 transferase, transfer 64.4 2E+02 0.0044 37.6 16.7 47 767-813 324-376 (977)
225 PF10267 Tmemb_cc2: Predicted 64.4 3E+02 0.0065 32.6 17.7 53 245-303 210-262 (395)
226 PF07106 TBPIP: Tat binding pr 64.1 74 0.0016 32.4 10.8 61 248-313 80-140 (169)
227 KOG0239 Kinesin (KAR3 subfamil 64.1 3.9E+02 0.0084 33.8 19.2 24 640-663 169-192 (670)
228 cd08392 C2A_SLP-3 C2 domain fi 63.9 8.6 0.00019 37.4 4.0 68 35-110 43-113 (128)
229 PF03962 Mnd1: Mnd1 family; I 63.8 52 0.0011 34.7 9.9 57 725-784 103-159 (188)
230 cd08400 C2_Ras_p21A1 C2 domain 63.3 38 0.00082 32.6 8.2 107 19-138 10-123 (126)
231 KOG0239 Kinesin (KAR3 subfamil 63.1 2.1E+02 0.0047 35.9 16.3 29 472-500 131-159 (670)
232 cd08382 C2_Smurf-like C2 domai 62.9 9.9 0.00022 36.2 4.1 70 43-123 31-104 (123)
233 COG4026 Uncharacterized protei 62.8 44 0.00095 36.8 9.2 88 431-532 132-219 (290)
234 PF15397 DUF4618: Domain of un 62.5 2.7E+02 0.0058 31.4 27.3 89 443-552 8-97 (258)
235 smart00338 BRLZ basic region l 62.3 21 0.00045 31.0 5.6 39 420-458 26-64 (65)
236 KOG0979 Structural maintenance 61.9 5E+02 0.011 34.3 20.2 181 596-808 177-359 (1072)
237 PF11932 DUF3450: Protein of u 61.9 88 0.0019 33.9 11.5 89 732-820 28-116 (251)
238 KOG1899 LAR transmembrane tyro 61.9 3.2E+02 0.007 34.4 16.8 75 543-625 132-206 (861)
239 PF04949 Transcrip_act: Transc 61.6 73 0.0016 33.1 10.0 101 364-466 32-137 (159)
240 PRK10361 DNA recombination pro 61.1 3.8E+02 0.0082 32.6 21.9 33 669-701 163-195 (475)
241 PLN03229 acetyl-coenzyme A car 60.8 4.4E+02 0.0096 33.8 18.1 38 488-529 460-497 (762)
242 cd08390 C2A_Synaptotagmin-15-1 60.4 29 0.00062 32.5 6.7 95 19-123 20-122 (123)
243 PF13870 DUF4201: Domain of un 60.3 2.1E+02 0.0045 29.4 19.9 30 598-627 4-33 (177)
244 PF15294 Leu_zip: Leucine zipp 59.6 1.2E+02 0.0025 34.4 12.1 26 672-697 126-151 (278)
245 PRK11519 tyrosine kinase; Prov 59.1 2.9E+02 0.0062 34.7 16.6 83 433-527 273-355 (719)
246 PRK10884 SH3 domain-containing 59.1 79 0.0017 34.0 10.3 30 602-631 88-117 (206)
247 PF10205 KLRAQ: Predicted coil 58.8 83 0.0018 30.8 9.4 74 764-854 2-75 (102)
248 cd04029 C2A_SLP-4_5 C2 domain 58.8 16 0.00034 35.3 4.7 93 20-122 22-124 (125)
249 TIGR01005 eps_transp_fam exopo 58.6 4.6E+02 0.0099 32.8 23.3 34 756-789 372-405 (754)
250 PF06705 SF-assemblin: SF-asse 58.6 2.7E+02 0.0059 30.2 30.4 91 566-663 148-239 (247)
251 cd04015 C2_plant_PLD C2 domain 58.3 19 0.0004 36.4 5.3 42 95-137 111-157 (158)
252 PRK09841 cryptic autophosphory 57.7 3.7E+02 0.008 33.8 17.2 85 429-527 269-355 (726)
253 PF09787 Golgin_A5: Golgin sub 57.1 4.2E+02 0.0092 32.0 34.6 87 568-663 337-423 (511)
254 KOG0244 Kinesin-like protein [ 56.8 5.5E+02 0.012 33.6 18.3 22 412-433 329-350 (913)
255 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.7 2.1E+02 0.0046 28.3 15.5 68 634-701 61-128 (132)
256 cd08386 C2A_Synaptotagmin-7 C2 56.6 17 0.00037 34.2 4.5 42 80-122 80-123 (125)
257 COG4717 Uncharacterized conser 56.6 5.8E+02 0.013 33.4 26.6 252 245-526 583-854 (984)
258 PF10168 Nup88: Nuclear pore c 56.4 5.3E+02 0.011 32.9 20.6 18 28-45 102-119 (717)
259 KOG0243 Kinesin-like protein [ 56.3 6.2E+02 0.013 33.6 32.7 238 483-735 404-685 (1041)
260 PRK10884 SH3 domain-containing 55.8 97 0.0021 33.4 10.4 18 735-752 96-113 (206)
261 PF04012 PspA_IM30: PspA/IM30 55.8 2.7E+02 0.0059 29.3 16.3 33 630-662 10-42 (221)
262 cd08675 C2B_RasGAP C2 domain s 55.3 20 0.00042 35.3 4.8 69 56-125 44-121 (137)
263 PF09755 DUF2046: Uncharacteri 55.0 3.9E+02 0.0084 30.9 33.4 287 478-808 15-302 (310)
264 PF09787 Golgin_A5: Golgin sub 54.9 4.6E+02 0.0099 31.7 32.1 41 573-617 390-430 (511)
265 cd08690 C2_Freud-1 C2 domain f 54.4 42 0.0009 34.4 7.1 64 80-144 75-143 (155)
266 PF14915 CCDC144C: CCDC144C pr 54.3 3.9E+02 0.0085 30.7 32.2 47 723-769 212-258 (305)
267 PF02183 HALZ: Homeobox associ 53.9 24 0.00053 29.5 4.4 24 435-458 6-29 (45)
268 KOG0992 Uncharacterized conser 53.4 5.2E+02 0.011 31.9 39.4 86 573-663 206-291 (613)
269 KOG1003 Actin filament-coating 53.3 3.4E+02 0.0073 29.7 15.1 94 720-813 6-106 (205)
270 KOG0982 Centrosomal protein Nu 53.0 4.9E+02 0.011 31.5 18.6 39 887-925 403-441 (502)
271 cd04047 C2B_Copine C2 domain s 53.0 37 0.00079 31.3 6.0 88 16-110 3-99 (110)
272 KOG4360 Uncharacterized coiled 52.4 3.2E+02 0.007 33.5 14.6 90 724-813 204-300 (596)
273 cd04038 C2_ArfGAP C2 domain pr 52.1 21 0.00045 35.8 4.5 99 19-132 8-108 (145)
274 TIGR01000 bacteriocin_acc bact 51.8 4.6E+02 0.01 30.9 19.4 25 787-811 290-314 (457)
275 PRK11020 hypothetical protein; 51.7 26 0.00057 34.8 4.9 54 648-701 7-62 (118)
276 smart00239 C2 Protein kinase C 51.6 51 0.0011 28.1 6.3 86 19-113 6-96 (101)
277 PF05266 DUF724: Protein of un 51.3 2.7E+02 0.0059 29.7 12.7 84 728-818 99-182 (190)
278 cd04025 C2B_RasA1_RasA4 C2 dom 51.3 33 0.00071 32.3 5.5 81 19-111 6-91 (123)
279 PF04012 PspA_IM30: PspA/IM30 51.0 3.2E+02 0.007 28.8 17.6 51 420-470 98-148 (221)
280 COG2433 Uncharacterized conser 50.6 1.9E+02 0.0041 36.0 12.6 13 242-254 297-309 (652)
281 KOG2991 Splicing regulator [RN 50.3 3.1E+02 0.0068 31.1 13.2 131 676-818 106-301 (330)
282 PF15254 CCDC14: Coiled-coil d 49.9 6.9E+02 0.015 32.3 18.9 23 603-625 390-412 (861)
283 PF06008 Laminin_I: Laminin Do 49.8 3.8E+02 0.0083 29.3 24.7 48 481-528 15-62 (264)
284 PF10212 TTKRSYEDQ: Predicted 49.8 2.3E+02 0.0051 34.6 13.1 93 433-535 419-511 (518)
285 KOG0804 Cytoplasmic Zn-finger 49.1 3.2E+02 0.007 33.0 13.8 14 787-800 434-447 (493)
286 PF02403 Seryl_tRNA_N: Seryl-t 48.9 80 0.0017 29.7 7.6 59 762-820 38-99 (108)
287 cd04037 C2E_Ferlin C2 domain f 48.5 25 0.00054 33.7 4.2 102 19-133 6-114 (124)
288 KOG0249 LAR-interacting protei 48.1 6.6E+02 0.014 32.3 16.5 177 584-773 68-257 (916)
289 KOG0804 Cytoplasmic Zn-finger 48.1 4.4E+02 0.0096 32.0 14.7 25 640-666 329-353 (493)
290 PF13870 DUF4201: Domain of un 47.9 3.1E+02 0.0067 28.2 12.2 27 667-693 30-57 (177)
291 PF12329 TMF_DNA_bd: TATA elem 47.7 98 0.0021 28.2 7.6 34 760-793 33-66 (74)
292 cd08691 C2_NEDL1-like C2 domai 47.4 76 0.0016 31.7 7.5 98 15-124 2-121 (137)
293 cd04009 C2B_Munc13-like C2 dom 47.2 77 0.0017 30.6 7.4 93 19-116 22-123 (133)
294 cd00632 Prefoldin_beta Prefold 47.1 2.3E+02 0.0051 26.8 10.4 45 409-453 59-103 (105)
295 PF04645 DUF603: Protein of un 46.9 47 0.001 35.1 6.1 50 258-309 109-158 (181)
296 cd08678 C2_C21orf25-like C2 do 46.6 46 0.001 31.7 5.8 57 83-140 59-122 (126)
297 PF10211 Ax_dynein_light: Axon 46.6 2.6E+02 0.0056 29.6 11.6 102 249-357 86-189 (189)
298 COG2433 Uncharacterized conser 46.6 1.1E+02 0.0025 37.8 10.0 95 703-801 414-508 (652)
299 PF03962 Mnd1: Mnd1 family; I 46.5 3.4E+02 0.0073 28.8 12.5 54 648-701 112-165 (188)
300 TIGR02338 gimC_beta prefoldin, 46.4 2.2E+02 0.0049 27.3 10.3 48 405-453 60-107 (110)
301 PF06810 Phage_GP20: Phage min 45.9 1.7E+02 0.0036 30.2 9.9 60 500-567 40-99 (155)
302 cd08381 C2B_PI3K_class_II C2 d 44.6 39 0.00084 32.4 4.9 96 20-122 20-121 (122)
303 cd04041 C2A_fungal C2 domain f 44.6 1E+02 0.0022 28.8 7.5 86 19-111 7-99 (111)
304 PRK11546 zraP zinc resistance 44.3 76 0.0016 32.6 7.1 66 620-696 49-114 (143)
305 PF14662 CCDC155: Coiled-coil 44.3 4.5E+02 0.0098 28.5 21.7 30 559-588 163-192 (193)
306 COG1842 PspA Phage shock prote 44.2 4.7E+02 0.01 28.7 15.5 60 630-692 11-73 (225)
307 cd04054 C2A_Rasal1_RasA4 C2 do 44.2 42 0.00091 31.9 5.0 52 83-135 61-119 (121)
308 PF07798 DUF1640: Protein of u 44.0 3.9E+02 0.0084 27.7 17.6 20 673-692 133-152 (177)
309 PRK00106 hypothetical protein; 44.0 7.1E+02 0.015 30.8 21.0 59 634-696 99-157 (535)
310 KOG3215 Uncharacterized conser 43.6 1.9E+02 0.0042 31.6 10.1 97 412-517 72-191 (222)
311 PF02841 GBP_C: Guanylate-bind 43.6 5.1E+02 0.011 28.9 29.2 146 533-691 149-297 (297)
312 PF12709 Kinetocho_Slk19: Cent 43.1 3.1E+02 0.0067 26.3 10.7 70 516-597 2-71 (87)
313 PF10146 zf-C4H2: Zinc finger- 42.9 3.8E+02 0.0083 29.5 12.5 49 768-816 54-102 (230)
314 PF01920 Prefoldin_2: Prefoldi 42.6 2.2E+02 0.0048 26.1 9.4 80 477-560 6-100 (106)
315 PF05529 Bap31: B-cell recepto 42.6 1.3E+02 0.0029 31.2 8.8 39 765-803 152-190 (192)
316 PF14992 TMCO5: TMCO5 family 42.5 5.1E+02 0.011 29.6 13.6 112 636-749 22-140 (280)
317 PF08826 DMPK_coil: DMPK coile 42.4 88 0.0019 27.9 6.3 37 709-745 23-59 (61)
318 cd07651 F-BAR_PombeCdc15_like 42.2 4.6E+02 0.01 28.1 19.8 110 503-640 73-183 (236)
319 PF00769 ERM: Ezrin/radixin/mo 41.7 5.2E+02 0.011 28.5 15.0 48 432-500 3-50 (246)
320 PF04977 DivIC: Septum formati 41.7 81 0.0018 27.6 6.1 49 413-461 17-68 (80)
321 TIGR01069 mutS2 MutS2 family p 41.5 5.3E+02 0.011 33.0 15.1 55 247-304 222-276 (771)
322 PF14282 FlxA: FlxA-like prote 40.8 1.5E+02 0.0032 28.7 8.1 50 731-780 18-71 (106)
323 PF06005 DUF904: Protein of un 40.5 1.4E+02 0.003 27.4 7.4 26 726-751 12-37 (72)
324 KOG4403 Cell surface glycoprot 40.4 5.2E+02 0.011 31.3 13.6 121 786-921 300-424 (575)
325 PF11559 ADIP: Afadin- and alp 39.7 4E+02 0.0087 26.6 14.3 72 483-561 66-137 (151)
326 KOG4809 Rab6 GTPase-interactin 39.7 8.5E+02 0.018 30.4 26.2 228 511-791 264-491 (654)
327 KOG1937 Uncharacterized conser 39.6 7.9E+02 0.017 30.0 26.1 22 573-594 350-371 (521)
328 PF12761 End3: Actin cytoskele 39.6 75 0.0016 34.2 6.5 59 735-793 131-193 (195)
329 KOG0018 Structural maintenance 39.3 1.1E+03 0.024 31.6 51.8 63 601-664 653-715 (1141)
330 COG4026 Uncharacterized protei 39.3 66 0.0014 35.5 6.0 68 715-782 139-206 (290)
331 cd00275 C2_PLC_like C2 domain 39.3 1.8E+02 0.0038 27.2 8.3 102 20-136 9-126 (128)
332 cd08408 C2B_Synaptotagmin-14_1 39.3 55 0.0012 32.3 5.1 81 21-107 23-110 (138)
333 PF07989 Microtub_assoc: Micro 38.8 3E+02 0.0065 25.4 9.3 64 496-559 6-73 (75)
334 KOG2751 Beclin-like protein [S 38.7 4.2E+02 0.0091 31.9 12.6 28 486-513 214-241 (447)
335 cd08405 C2B_Synaptotagmin-7 C2 38.5 1.1E+02 0.0023 29.5 6.9 30 80-109 80-111 (136)
336 TIGR02449 conserved hypothetic 38.2 1.5E+02 0.0032 27.0 7.1 55 436-497 2-56 (65)
337 TIGR03319 YmdA_YtgF conserved 38.2 4.2E+02 0.0091 32.3 13.1 57 603-663 58-114 (514)
338 cd04049 C2_putative_Elicitor-r 38.1 71 0.0015 30.1 5.5 102 19-126 7-110 (124)
339 PF03954 Lectin_N: Hepatic lec 38.0 1.5E+02 0.0034 30.4 8.0 80 482-586 47-137 (138)
340 PF08581 Tup_N: Tup N-terminal 37.3 2.4E+02 0.0051 26.4 8.5 43 764-806 15-57 (79)
341 PRK15422 septal ring assembly 37.3 1.9E+02 0.0042 27.3 7.8 41 764-804 22-62 (79)
342 TIGR01069 mutS2 MutS2 family p 37.3 6.2E+02 0.014 32.4 14.9 39 613-655 496-534 (771)
343 PF11932 DUF3450: Protein of u 37.1 4E+02 0.0087 28.9 11.7 17 676-692 47-63 (251)
344 PRK11546 zraP zinc resistance 37.0 2.9E+02 0.0063 28.6 9.9 66 719-784 48-113 (143)
345 PF05082 Rop-like: Rop-like; 36.7 1.3E+02 0.0027 27.6 6.4 62 247-308 2-63 (66)
346 PF12329 TMF_DNA_bd: TATA elem 36.6 2.9E+02 0.0064 25.2 8.9 69 480-552 2-70 (74)
347 PRK10698 phage shock protein P 36.5 5.9E+02 0.013 27.6 15.2 38 346-383 11-48 (222)
348 PRK12704 phosphodiesterase; Pr 36.3 8.9E+02 0.019 29.7 16.7 62 634-699 91-152 (520)
349 PF15294 Leu_zip: Leucine zipp 36.2 6.1E+02 0.013 28.9 13.0 69 427-495 132-202 (278)
350 PRK15422 septal ring assembly 36.1 2.2E+02 0.0048 26.9 8.0 36 416-451 7-42 (79)
351 PRK06568 F0F1 ATP synthase sub 36.0 5.2E+02 0.011 26.9 15.6 30 561-590 108-137 (154)
352 KOG0982 Centrosomal protein Nu 35.9 8.8E+02 0.019 29.5 21.1 136 552-701 281-426 (502)
353 KOG1962 B-cell receptor-associ 35.7 1.6E+02 0.0036 32.2 8.3 92 251-355 118-210 (216)
354 TIGR01000 bacteriocin_acc bact 35.7 8E+02 0.017 28.9 19.6 27 601-627 237-263 (457)
355 PF14992 TMCO5: TMCO5 family 35.0 6.8E+02 0.015 28.7 13.1 44 346-389 5-48 (280)
356 PRK10361 DNA recombination pro 34.4 9.4E+02 0.02 29.4 20.5 24 724-747 164-187 (475)
357 PF02403 Seryl_tRNA_N: Seryl-t 34.1 2E+02 0.0043 27.1 7.8 67 729-795 26-95 (108)
358 PF05791 Bacillus_HBL: Bacillu 34.0 2.5E+02 0.0054 29.4 9.2 69 728-806 113-181 (184)
359 cd04021 C2_E3_ubiquitin_ligase 33.4 1.2E+02 0.0026 29.1 6.3 44 83-126 61-110 (125)
360 KOG4348 Adaptor protein CMS/SE 33.3 3.4E+02 0.0074 32.8 10.8 50 246-295 568-621 (627)
361 cd08385 C2A_Synaptotagmin-1-5- 32.6 81 0.0017 29.7 4.9 84 19-111 22-112 (124)
362 PF09403 FadA: Adhesion protei 32.5 5.4E+02 0.012 26.0 11.1 86 570-655 29-119 (126)
363 PRK09841 cryptic autophosphory 32.5 1.1E+03 0.024 29.7 16.0 61 472-534 230-290 (726)
364 KOG4196 bZIP transcription fac 32.3 1.1E+02 0.0023 31.4 5.8 63 247-312 47-118 (135)
365 cd07651 F-BAR_PombeCdc15_like 31.8 6.7E+02 0.015 26.9 23.2 106 397-519 37-143 (236)
366 PRK09174 F0F1 ATP synthase sub 31.6 6.8E+02 0.015 26.9 13.4 103 521-643 76-178 (204)
367 cd08404 C2B_Synaptotagmin-4 C2 31.4 84 0.0018 30.4 4.9 84 19-108 21-110 (136)
368 PF08647 BRE1: BRE1 E3 ubiquit 31.3 4.6E+02 0.01 24.9 11.0 46 488-533 29-74 (96)
369 cd08406 C2B_Synaptotagmin-12 C 31.3 99 0.0022 30.6 5.5 80 20-107 22-109 (136)
370 PF09755 DUF2046: Uncharacteri 31.2 8.9E+02 0.019 28.1 32.4 156 416-622 23-178 (310)
371 PF01166 TSC22: TSC-22/dip/bun 31.0 76 0.0016 28.4 4.0 28 428-455 15-42 (59)
372 PF01166 TSC22: TSC-22/dip/bun 30.9 49 0.0011 29.5 2.8 28 413-440 14-41 (59)
373 cd04045 C2C_Tricalbin-like C2 30.9 95 0.0021 29.7 5.2 46 84-130 63-110 (120)
374 PF07851 TMPIT: TMPIT-like pro 30.9 3.2E+02 0.007 31.7 10.1 93 726-825 5-98 (330)
375 PF05010 TACC: Transforming ac 30.8 7.4E+02 0.016 27.0 23.7 37 413-449 23-59 (207)
376 KOG1962 B-cell receptor-associ 30.4 3.6E+02 0.0077 29.7 9.8 20 675-694 190-209 (216)
377 PF10186 Atg14: UV radiation r 30.4 7.1E+02 0.015 26.8 17.2 28 421-448 21-48 (302)
378 TIGR00293 prefoldin, archaeal 30.3 4.9E+02 0.011 25.1 9.9 42 763-804 82-123 (126)
379 cd08409 C2B_Synaptotagmin-15 C 30.2 83 0.0018 30.8 4.7 84 20-110 22-111 (137)
380 PF05700 BCAS2: Breast carcino 30.1 7.3E+02 0.016 26.8 14.8 142 299-455 63-217 (221)
381 KOG4001 Axonemal dynein light 30.0 1.4E+02 0.0031 32.6 6.6 76 274-356 178-253 (259)
382 PRK09343 prefoldin subunit bet 29.7 5.6E+02 0.012 25.3 10.8 49 405-454 64-112 (121)
383 PRK11820 hypothetical protein; 29.2 8.8E+02 0.019 27.6 12.9 75 674-800 213-287 (288)
384 PRK03947 prefoldin subunit alp 29.1 5.7E+02 0.012 25.2 11.4 45 757-801 91-135 (140)
385 cd04010 C2B_RasA3 C2 domain se 29.0 1.6E+02 0.0034 29.9 6.5 68 57-124 46-122 (148)
386 PF10267 Tmemb_cc2: Predicted 28.8 1.1E+03 0.023 28.3 13.9 42 483-524 276-318 (395)
387 cd04028 C2B_RIM1alpha C2 domai 28.6 92 0.002 31.6 4.8 66 51-125 70-139 (146)
388 PF04728 LPP: Lipoprotein leuc 28.6 3.5E+02 0.0076 24.1 7.6 47 672-751 4-50 (56)
389 TIGR03545 conserved hypothetic 28.5 1.8E+02 0.004 35.7 8.1 95 596-691 160-257 (555)
390 TIGR01843 type_I_hlyD type I s 28.4 9E+02 0.019 27.3 22.3 18 675-692 250-267 (423)
391 cd00030 C2 C2 domain. The C2 d 28.2 1.1E+02 0.0024 25.6 4.6 28 83-110 61-90 (102)
392 COG5509 Uncharacterized small 28.2 85 0.0019 28.3 3.9 25 756-780 28-52 (65)
393 TIGR02894 DNA_bind_RsfA transc 28.2 1.5E+02 0.0033 31.2 6.3 42 414-455 105-146 (161)
394 PF01442 Apolipoprotein: Apoli 28.1 5.9E+02 0.013 25.0 23.3 22 487-508 9-30 (202)
395 PRK06569 F0F1 ATP synthase sub 28.1 7.2E+02 0.016 26.0 11.8 87 584-693 35-125 (155)
396 PF09304 Cortex-I_coil: Cortex 28.0 5.6E+02 0.012 25.5 9.7 85 286-370 20-104 (107)
397 cd00632 Prefoldin_beta Prefold 28.0 5.3E+02 0.011 24.5 12.4 25 429-453 8-32 (105)
398 PF06120 Phage_HK97_TLTM: Tail 27.7 9.9E+02 0.021 27.6 13.5 111 673-800 50-160 (301)
399 PF10168 Nup88: Nuclear pore c 27.6 1.4E+03 0.03 29.3 19.2 31 663-693 684-714 (717)
400 PF14817 HAUS5: HAUS augmin-li 27.5 9.1E+02 0.02 30.5 13.7 130 236-366 292-438 (632)
401 PF07851 TMPIT: TMPIT-like pro 27.3 3.3E+02 0.0073 31.6 9.4 37 442-482 5-41 (330)
402 KOG2751 Beclin-like protein [S 27.2 8.2E+02 0.018 29.6 12.5 26 518-543 228-253 (447)
403 COG0497 RecN ATPase involved i 27.2 1.3E+03 0.028 28.8 18.2 197 532-753 167-370 (557)
404 COG3074 Uncharacterized protei 27.2 3.9E+02 0.0084 25.0 7.9 41 762-802 20-60 (79)
405 PF04582 Reo_sigmaC: Reovirus 26.7 1.1E+02 0.0025 35.2 5.6 105 714-825 66-173 (326)
406 KOG0979 Structural maintenance 26.7 1.7E+03 0.037 29.9 27.9 46 487-532 626-671 (1072)
407 KOG1003 Actin filament-coating 26.6 8.8E+02 0.019 26.6 22.8 39 713-751 160-198 (205)
408 cd08377 C2C_MCTP_PRT C2 domain 26.3 2.3E+02 0.0049 26.3 6.7 52 83-136 61-117 (119)
409 TIGR02449 conserved hypothetic 26.3 2.8E+02 0.0062 25.2 6.8 50 414-463 1-50 (65)
410 PF01920 Prefoldin_2: Prefoldi 26.1 5.2E+02 0.011 23.7 11.6 68 721-788 8-90 (106)
411 PF08581 Tup_N: Tup N-terminal 25.7 5.3E+02 0.011 24.2 8.7 53 488-540 23-75 (79)
412 COG3524 KpsE Capsule polysacch 25.6 1.1E+03 0.025 27.6 13.4 125 611-753 190-316 (372)
413 PLN03229 acetyl-coenzyme A car 25.5 1.6E+03 0.034 29.2 19.8 34 349-384 440-473 (762)
414 PF06785 UPF0242: Uncharacteri 25.4 7.5E+02 0.016 29.2 11.5 97 681-793 71-167 (401)
415 KOG1937 Uncharacterized conser 25.1 1.3E+03 0.029 28.2 24.9 57 599-656 261-317 (521)
416 PF15254 CCDC14: Coiled-coil d 25.0 1.6E+03 0.036 29.2 17.8 57 487-547 398-459 (861)
417 PF03194 LUC7: LUC7 N_terminus 24.9 4.9E+02 0.011 28.9 9.9 73 547-619 94-175 (254)
418 PRK00409 recombination and DNA 24.8 1.3E+03 0.028 29.8 14.7 117 634-775 504-622 (782)
419 TIGR01010 BexC_CtrB_KpsE polys 24.5 1.1E+03 0.023 26.9 15.3 67 482-548 241-308 (362)
420 KOG4603 TBP-1 interacting prot 24.4 2.4E+02 0.0052 30.3 6.9 68 676-753 77-144 (201)
421 TIGR00255 conserved hypothetic 24.4 8.9E+02 0.019 27.5 11.9 75 674-800 216-290 (291)
422 PF05529 Bap31: B-cell recepto 24.3 2.3E+02 0.0049 29.5 6.9 38 414-451 155-192 (192)
423 cd00205 rhv_like Picornavirus 23.8 1.3E+02 0.0029 30.0 5.0 39 1-47 50-88 (178)
424 PF09738 DUF2051: Double stran 23.6 6.3E+02 0.014 29.0 10.6 92 715-813 74-172 (302)
425 PF04977 DivIC: Septum formati 23.5 2E+02 0.0043 25.1 5.5 43 721-763 20-62 (80)
426 PF12953 DUF3842: Domain of un 23.5 36 0.00078 34.5 0.9 34 94-127 76-109 (131)
427 PF04508 Pox_A_type_inc: Viral 23.3 90 0.0019 23.2 2.6 21 414-434 2-22 (23)
428 PF02050 FliJ: Flagellar FliJ 23.2 5.7E+02 0.012 23.2 11.0 89 728-816 1-94 (123)
429 PRK00888 ftsB cell division pr 23.0 2.2E+02 0.0049 27.5 6.1 53 276-345 28-80 (105)
430 cd07647 F-BAR_PSTPIP The F-BAR 22.8 9.8E+02 0.021 25.8 24.1 149 397-575 37-185 (239)
431 PF07028 DUF1319: Protein of u 22.4 6.2E+02 0.013 25.9 9.1 55 485-539 62-120 (126)
432 PF04065 Not3: Not1 N-terminal 22.4 1.1E+03 0.024 26.2 12.6 128 570-701 3-152 (233)
433 PRK12705 hypothetical protein; 22.3 1.5E+03 0.033 27.9 16.0 64 596-663 51-115 (508)
434 COG4913 Uncharacterized protei 22.0 1.9E+03 0.04 28.8 14.8 135 678-823 674-811 (1104)
435 PF00804 Syntaxin: Syntaxin; 22.0 5.7E+02 0.012 22.8 9.9 96 479-575 3-101 (103)
436 PF14389 Lzipper-MIP1: Leucine 21.7 6.4E+02 0.014 23.8 8.6 34 884-917 51-84 (88)
437 PF02994 Transposase_22: L1 tr 21.7 1.4E+02 0.003 34.6 5.2 91 728-825 101-195 (370)
438 PRK15178 Vi polysaccharide exp 21.7 9.5E+02 0.021 29.0 11.9 57 479-535 282-338 (434)
439 COG3074 Uncharacterized protei 21.6 5.5E+02 0.012 24.1 7.7 60 723-782 9-68 (79)
440 PF07162 B9-C2: Ciliary basal 21.4 90 0.0019 32.0 3.3 25 16-42 63-87 (168)
441 TIGR00414 serS seryl-tRNA synt 21.0 3.6E+02 0.0079 31.8 8.4 63 563-625 39-101 (418)
442 KOG3894 SNARE protein Syntaxin 20.9 6.6E+02 0.014 29.2 10.0 112 453-568 180-292 (316)
443 COG3883 Uncharacterized protei 20.8 1.3E+03 0.027 26.3 19.1 44 412-455 51-94 (265)
444 PRK14127 cell division protein 20.6 2E+02 0.0044 28.4 5.2 24 437-460 26-49 (109)
445 cd08383 C2A_RasGAP C2 domain ( 20.5 4.8E+02 0.01 24.0 7.6 39 94-136 73-116 (117)
446 PF14193 DUF4315: Domain of un 20.3 2.3E+02 0.0049 26.8 5.3 39 421-461 2-40 (83)
447 PLN02320 seryl-tRNA synthetase 20.2 2.3E+02 0.0051 34.5 6.8 53 764-816 104-158 (502)
448 PF10498 IFT57: Intra-flagella 20.1 1.4E+03 0.031 26.7 14.5 139 646-818 220-358 (359)
449 PLN02939 transferase, transfer 20.1 2.2E+03 0.047 28.8 28.3 112 498-621 227-345 (977)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.83 E-value=1.5e-20 Score=179.39 Aligned_cols=136 Identities=27% Similarity=0.359 Sum_probs=126.3
Q ss_pred ccceeEEEEEeeeeeccccCcccceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeee
Q 002247 9 KNKIKAVFKLQFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFI 88 (947)
Q Consensus 9 K~KiK~vFklqFhAtQVP~~gwdkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfv 88 (947)
+.++|+.|.|.+|..+.....|..++|++--++.+++.+.|..+.|.+|.|.|++++..+++|..|.+++.|++|+|+|+
T Consensus 2 ~~~~kf~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 2 KKAVKFQFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred CceeeEEEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 56789999999998886666899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc--CCccccccceecchhhhhccc-CCcccccccccC-CCCCeeeeeeeeccCCCCC
Q 002247 89 VSTG--SSKSGFLGEASIDFADFAAET-EPLTLSLPLKFA-NSGAVLHVTIEKMDGATDQ 144 (947)
Q Consensus 89 Vs~G--SSkSgiLGEasINlAdYa~a~-kp~tVSLPLk~c-nsGtvLHVtIQ~L~~~s~~ 144 (947)
|..+ +.+...||.++||||+||+.. +|.++.+||+.| .++|+|||+|++..-.+++
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELREDP 141 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccCC
Confidence 9975 666689999999999999996 999999999999 9999999999998876655
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.55 E-value=1.8e-08 Score=129.45 Aligned_cols=475 Identities=20% Similarity=0.265 Sum_probs=253.8
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhhhh-HHHHHHHHHHHHhhhhh
Q 002247 267 ELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEH-LKFLQEEIREELNYEKE 345 (947)
Q Consensus 267 ~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e~~-~~~l~eElr~El~yEKe 345 (947)
+.++.-+..++..+..+..+|.++...++.||..|+..++.+-.. ..++..+-. .-..++.+++++....+
T Consensus 907 e~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~--------~~k~~~Ek~~~e~~~~~l~~e~~~~~e 978 (1930)
T KOG0161|consen 907 EKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELT--------LQKLELEKNAAENKLKNLEEEINSLDE 978 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555554444444444444332 222333333 44556777888877777
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 002247 346 VSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQ 425 (947)
Q Consensus 346 ~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~~~E~~~L~qKI~dL 425 (947)
.++.|.-.=+-.++.+-+|...++..++.+.+.++-...+-..+.+..- ..+... .-...++..+..+
T Consensus 979 ~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~----------~le~e~--~~r~e~Ek~~rkl 1046 (1930)
T KOG0161|consen 979 NISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEV----------TLEREK--RIRMELEKAKRKL 1046 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH--HHHHHHHHHHHHH
Confidence 7888777766777888888888888888888777776665543332211 110000 0111111222222
Q ss_pred hh-------HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHH
Q 002247 426 GD-------EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDK 498 (947)
Q Consensus 426 ~~-------Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~e 498 (947)
.+ .|+.++..+++|..+..-.+.+..-|.. +++. .+.+-+..+..|.+|.+++.-|.++
T Consensus 1047 e~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~-------k~e~-------e~~~~~~l~k~i~eL~~~i~el~e~ 1112 (1930)
T KOG0161|consen 1047 EGELKDLQESIEELKKQKEELDNQLKKKESELSQLQS-------KLED-------EQAEVAQLQKQIKELEARIKELEEE 1112 (1930)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2333444444444433333333333322 3333 2223345567788888999999888
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 002247 499 IKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFR 578 (947)
Q Consensus 499 LkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~ 578 (947)
|...+..-+..-...+.|...+..|.++|+.+..+ ..+....+..++.........|....++....++.|.....
T Consensus 1113 le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~----t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~ 1188 (1930)
T KOG0161|consen 1113 LEAERASRAKAERQRRDLSEELEELKEELEEQGGT----TAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHA 1188 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888888888888889999999888443 33444556666666666667777777777777766665544
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH---HhHHHHhhhhhhhhccHHHHHHHHHHH-------HHHH
Q 002247 579 RLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQ---KANDELSLIKDQNGVKLQELSDQLEQK-------DKQI 648 (947)
Q Consensus 579 ~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lq---k~neeL~~~~~~~e~kl~eL~~q~d~K-------~k~i 648 (947)
.-..++...++.-=+.=.+...+=+.|......|+..+. .....+......|++.|.+|.-.++.- +.+.
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~ 1268 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKR 1268 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443332223333444444444444443332 333333344444555555554444433 3344
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHH
Q 002247 649 QKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERD 728 (947)
Q Consensus 649 e~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~ 728 (947)
-++..|+...+++++.... ...+++....-+...|+.++. .+...++++.
T Consensus 1269 ~~l~~E~~~l~~~lee~e~----~~~~~~r~~~~~~~qle~~k~--------------------------qle~e~r~k~ 1318 (1930)
T KOG0161|consen 1269 SRLQNENEELSRQLEEAEA----KLSALSRDKQALESQLEELKR--------------------------QLEEETREKS 1318 (1930)
T ss_pred HHhhhhHHHHhhHhHHHHH----HHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHH
Confidence 5556666666666663322 333333333333333333322 2333445555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh-HHHHhhHHHHHHHHHHHHHHHhh
Q 002247 729 DLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI-EEKLEKDNLAKQVFQLKDELQKK 807 (947)
Q Consensus 729 ~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls-~~~~EkE~l~kqv~qLk~eL~kk 807 (947)
.|...+..+..|+..+++.+..=..-+++..--+..+-+++-.-+.++.+...... +-+-++-+++..+..+...+...
T Consensus 1319 ~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~ 1398 (1930)
T KOG0161|consen 1319 ALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAA 1398 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555544422 23333334455555444444444
Q ss_pred HH
Q 002247 808 KE 809 (947)
Q Consensus 808 E~ 809 (947)
..
T Consensus 1399 ~~ 1400 (1930)
T KOG0161|consen 1399 NA 1400 (1930)
T ss_pred HH
Confidence 43
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.48 E-value=8.4e-08 Score=123.45 Aligned_cols=485 Identities=20% Similarity=0.260 Sum_probs=259.7
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQS 492 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~ 492 (947)
+.+..|...+.++..-=....++...|...+.+|+...+-+.....++..+.+..+.|...+|-.|+..-..+++|=.|.
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~ 1268 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKR 1268 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444322233466677777777777777777777777777776666666557777777777777776666
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 002247 493 ERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAER 572 (947)
Q Consensus 493 e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~ 572 (947)
..+-.+..+....+.+. +..+..+.+... .|...++.+ +|.. +.=.+.+..-+.+.-+
T Consensus 1269 ~~l~~E~~~l~~~lee~-------e~~~~~~~r~~~----~~~~qle~~--------k~ql---e~e~r~k~~l~~~l~~ 1326 (1930)
T KOG0161|consen 1269 SRLQNENEELSRQLEEA-------EAKLSALSRDKQ----ALESQLEEL--------KRQL---EEETREKSALENALRQ 1326 (1930)
T ss_pred HHhhhhHHHHhhHhHHH-------HHHHHHHHHHHH----HHHHHHHHH--------HHHH---HHHHHHHHHHHHHHHH
Confidence 66655544444433333 333333322221 222222222 1111 1112233444555566
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHH------
Q 002247 573 LQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDK------ 646 (947)
Q Consensus 573 LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k------ 646 (947)
++.|+..|-.++..-++....+..++-.-..+.-..++++++.+.-+.+++.-++--...+++++..+++....
T Consensus 1327 l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Le 1406 (1930)
T KOG0161|consen 1327 LEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLE 1406 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777666666666666666677777777777777777666666667777666665332
Q ss_pred -HHHHHHHHHhhhhhhhhhhh---hhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhh
Q 002247 647 -QIQKMYLELDHSSSQLIDEH---KSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQK 722 (947)
Q Consensus 647 -~ie~m~~el~~kSkqle~~~---~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~ 722 (947)
..-++..|+++..-.++... ..-+..+..|..=+.-.|..-++|..+++. .....+.++..++.
T Consensus 1407 k~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~------------aq~e~r~~~tel~k 1474 (1930)
T KOG0161|consen 1407 KAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDA------------AQRELRQLSTELQK 1474 (1930)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhHHHHHH
Confidence 22333555555555554321 111222333333333333333333332222 22234445555555
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHH-------hhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHH
Q 002247 723 WNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLI-------GNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAK 795 (947)
Q Consensus 723 ~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i-------~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~k 795 (947)
-.....++...+.-+..+-.++..++..+...+++.+..+ +.+..+++.|+++..++-..|.-++..+=.++=
T Consensus 1475 l~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~ 1554 (1930)
T KOG0161|consen 1475 LKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQL 1554 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 5555555555566666666666666666666555555554 555555555555555555555544444433444
Q ss_pred HHHHHHHH----HHhhHHHHhhhhhhccccCC----CCchhhhchhH------HHHhhhhhhhhhhhhhhchhhhh-hHH
Q 002247 796 QVFQLKDE----LQKKKEEINRTGKGLKKYGG----PVSDAQMTSMK------ERLRKGQKKLNKAELETSDNRIA-VDE 860 (947)
Q Consensus 796 qv~qLk~e----L~kkE~~~~~~ek~lk~~~g----r~~~~tk~~~~------nk~~~~~i~~~e~~~e~s~~~~~-~ek 860 (947)
.+.+++++ |.-|++++....+.+--..- ..-+ -|..+ -|.++|.|.-+++++..+-.... ..|
T Consensus 1555 ~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~--E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K 1632 (1930)
T KOG0161|consen 1555 ELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEA--ETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQK 1632 (1930)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHH
Confidence 44555544 45555554443222110000 0000 11111 16788888888888887765443 444
Q ss_pred Hhh----hhhhccccccccccccccCCCCCCchHHHHHHHHHHHHHhHhHHHHHHHHHhhhhcccccchhchhhhhhhhh
Q 002247 861 YRH----MIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVM 936 (947)
Q Consensus 861 e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~r~~~~e~el~~m~~rys~~sl~faevegerq~lvm 936 (947)
.+. ..+. ...++. ..-+...++..-+....+|+..++.|+.+|...+...+--=-.+|-++..+.-
T Consensus 1633 ~lkk~q~~~k~--lq~~~e--------~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e 1702 (1930)
T KOG0161|consen 1633 QLKKLQAQLKE--LQRELE--------DAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAE 1702 (1930)
T ss_pred HHHhhHHHHHH--HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 442 1110 000000 01122356777777888888888888888888887766655556666666666
Q ss_pred hhhhccc
Q 002247 937 TVRNLKN 943 (947)
Q Consensus 937 ~~~~~~~ 943 (947)
-|+.+.+
T Consensus 1703 ~i~~~~~ 1709 (1930)
T KOG0161|consen 1703 RVNELNA 1709 (1930)
T ss_pred HHHHHhh
Confidence 6665543
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.43 E-value=1.2e-07 Score=116.00 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=32.1
Q ss_pred HHHHHHHHhHhHHHHHHHHH-------hhhhcccccchhchhhhhhhhhhhhhc
Q 002247 895 EVSLLKEKNKRMETELKEMQ-------ERYSEISLKFAEVEGERQQLVMTVRNL 941 (947)
Q Consensus 895 ~~~~lk~r~~~~e~el~~m~-------~rys~~sl~faevegerq~lvm~~~~~ 941 (947)
++..|+.+...|...+.+.. +||-.++=++..++..+..|.-.++.+
T Consensus 966 ~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i 1019 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETL 1019 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665553 788888888888888877776555443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.42 E-value=8.7e-07 Score=109.05 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHHH-------hHhHHHHHHHHHhhhhcccccchhchhhhhhhhhhhhhccc
Q 002247 888 NFTEVLMEVSLLKEK-------NKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLKN 943 (947)
Q Consensus 888 ~~~~~~~~~~~lk~r-------~~~~e~el~~m~~rys~~sl~faevegerq~lvm~~~~~~~ 943 (947)
++.++-.++..++.+ |...-.++.+..+||..+.=+++.++..+..|...+..|+.
T Consensus 952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~ 1014 (1164)
T TIGR02169 952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665 54555899999999999999999999999999998888764
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=5.3e-06 Score=105.72 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--hhHHHHHHHHHHHHHHHHHh
Q 002247 486 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTH--AKTEQEQRAIRAEEELRKTR 563 (947)
Q Consensus 486 ~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~--~~~EqEqRai~aeeaLrk~r 563 (947)
..+..-+..+..++..........-..+..++.++..+.+++......+.+--..|.. .-.+++.....+++.+.+++
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 4555666666677777777777777777777777777777777666666655555552 33556777777777777776
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.29 E-value=4.1e-06 Score=105.63 Aligned_cols=320 Identities=23% Similarity=0.283 Sum_probs=172.2
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhhHHHHhhhhH
Q 002247 601 EANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELD---HSSSQLIDEHKSEAQKHEALS 677 (947)
Q Consensus 601 Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~---~kSkqle~~~~~~~~~~~~~s 677 (947)
+...++.+...++.-+..+..+++. .+..+.++..++..-...++..-.++. ...+++...-.+=++....+.
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 750 (1163)
T COG1196 675 ELAELEAQLEKLEEELKSLKNELRS----LEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444 334445555555544444444443332 222233222222223333344
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccch
Q 002247 678 TEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGE 757 (947)
Q Consensus 678 ~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kde 757 (947)
.++..+.++++++..+++.+.+.. ..++..+.++....+....++..+..++..++..+..+..++.......+.
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1163)
T COG1196 751 EELEELQERLEELEEELESLEEAL-----AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554443 223334445555555566677777777777777777778888887777778
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCCCCchhhhchhHHHH
Q 002247 758 NEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERL 837 (947)
Q Consensus 758 kE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~gr~~~~tk~~~~nk~ 837 (947)
.+..|..+..++..++.+++.|...+..-+...++++.++..++.++...++.+.....+..+-..++ ..-......
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l---~~~~~~~~~ 902 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL---RELESELAE 902 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 88888888888888888888888888877777777777777777666666666666555544433332 000001122
Q ss_pred hhhhhhhhhhhhhhchhhhh-hHHHhhhhhhccccccccccccccCCCCCCchHHHHHHHHHHHHH-------hHhHHHH
Q 002247 838 RKGQKKLNKAELETSDNRIA-VDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEK-------NKRMETE 909 (947)
Q Consensus 838 ~~~~i~~~e~~~e~s~~~~~-~eke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~r-------~~~~e~e 909 (947)
+..+|....+.+...-.... ++-. +........... ....+ .++-..+..++.+ |...-.+
T Consensus 903 ~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~--~~~~~-------~~~~~~i~~le~~i~~lg~VN~~Aiee 971 (1163)
T COG1196 903 LKEEIEKLRERLEELEAKLERLEVE--LPELEEELEEEY--EDTLE-------TELEREIERLEEEIEALGPVNLRAIEE 971 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcccc--ccchh-------HHHHHHHHHHHHHHHhccCCChhHHHH
Confidence 22222222222222110000 0000 000000000000 00000 1455555555555 6666778
Q ss_pred HHHHHhhhhcccccchhchhhhhhhhhhhhhccc
Q 002247 910 LKEMQERYSEISLKFAEVEGERQQLVMTVRNLKN 943 (947)
Q Consensus 910 l~~m~~rys~~sl~faevegerq~lvm~~~~~~~ 943 (947)
..+..+||-.+.-+++.++..+..|.-.+..++.
T Consensus 972 ~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 972 YEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777665543
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.26 E-value=1.8e-05 Score=101.60 Aligned_cols=263 Identities=19% Similarity=0.230 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhh
Q 002247 638 SDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETD 717 (947)
Q Consensus 638 ~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e 717 (947)
...+..-...+++|-.+++.-..+++...++.......+-.+|-.|+++|+.|..+. ..++...+
T Consensus 932 qe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~---------------~~~~k~~e 996 (1822)
T KOG4674|consen 932 QEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREEL---------------ELSTKGKE 996 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hccccchh
Confidence 333444455566666666666666666666666666666666667777776666421 23445555
Q ss_pred hhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHH
Q 002247 718 MLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQV 797 (947)
Q Consensus 718 ~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv 797 (947)
..+.....++.-+..+...+..-+..+..-+..++.-.....+..+..+..++.=-.+|.++...|..-..+-.+++.++
T Consensus 997 ~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~ 1076 (1822)
T KOG4674|consen 997 DKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDEL 1076 (1822)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555666666677767777777889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHhhhhhhccccCCCC----chhhh----chhHHHHhhhhhhhhhhhhhh------------chh--h
Q 002247 798 FQLKDELQKKKEEINRTGKGLKKYGGPV----SDAQM----TSMKERLRKGQKKLNKAELET------------SDN--R 855 (947)
Q Consensus 798 ~qLk~eL~kkE~~~~~~ek~lk~~~gr~----~~~tk----~~~~nk~~~~~i~~~e~~~e~------------s~~--~ 855 (947)
..|+....+..+.+..+++.......-- .-..+ -..-|+.++.+|..+-...-. +-+ +
T Consensus 1077 ~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~ 1156 (1822)
T KOG4674|consen 1077 LKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVS 1156 (1822)
T ss_pred HHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHH
Confidence 9999999999998888665544331111 00001 111246666666554444221 111 1
Q ss_pred hhhHHHhh-----------------------------hhhhccccccccccccccCCCCCCchHHHHHHHHHHHHHhHhH
Q 002247 856 IAVDEYRH-----------------------------MIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRM 906 (947)
Q Consensus 856 ~~~eke~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~r~~~~ 906 (947)
| +-+|++ +..+...+.. .++.+.......+++..-+.+|-.|++=|+.+
T Consensus 1157 ~-LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~-~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~L 1234 (1822)
T KOG4674|consen 1157 F-LRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERA-SSQKSAVSDDEHKEILEKVEEVNLLRESNKVL 1234 (1822)
T ss_pred H-HHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhhhhhhhHHHHHHHHHHHHHHhHHHH
Confidence 1 333332 2222222222 22223333456667777777787777887777
Q ss_pred HHHHHHHHhhh
Q 002247 907 ETELKEMQERY 917 (947)
Q Consensus 907 e~el~~m~~ry 917 (947)
-.+++..-+|.
T Consensus 1235 Ree~~~~~~k~ 1245 (1822)
T KOG4674|consen 1235 REENEANLEKI 1245 (1822)
T ss_pred HHHHHHHHHHH
Confidence 77766655554
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.24 E-value=7.9e-06 Score=100.28 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
+...+++.+.++.+++..+..+.+.+...++++...+..+..
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 421 (1179)
T TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666666666666666666666666654
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=99.22 E-value=7.7e-06 Score=99.65 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhh
Q 002247 262 QVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQ 311 (947)
Q Consensus 262 ~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~ 311 (947)
-.......++.++.+|.. +..+++...+..+..+++.++.+++.++..
T Consensus 181 ~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~~~~~~ 228 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIERYEEQ 228 (880)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456666666666 445666677777777777777777766653
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.09 E-value=6e-05 Score=93.20 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhhhhcccccchhchhhhhhh
Q 002247 893 LMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQL 934 (947)
Q Consensus 893 ~~~~~~lk~r~~~~e~el~~m~~rys~~sl~faevegerq~l 934 (947)
+.+...+.+|...+..++.++.+....|-=-+..+.-.|...
T Consensus 978 i~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~ 1019 (1164)
T TIGR02169 978 IQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554444444444444444444333
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=99.07 E-value=0.00018 Score=87.84 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=11.2
Q ss_pred cceEEEeeeCCCCCccc
Q 002247 31 SAVMISLVPDDVGKPTF 47 (947)
Q Consensus 31 dkL~vSiVp~DtGK~Ta 47 (947)
+.++|-+=|--.||+|.
T Consensus 23 ~g~~~i~G~Ng~GKSti 39 (880)
T PRK02224 23 DGVTVIHGVNGSGKSSL 39 (880)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45666666777777663
No 13
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.04 E-value=9.8e-05 Score=95.12 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=57.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHh-------hHh-HHHHhhHHHHHHHHHHH
Q 002247 730 LEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQN-------SLI-EEKLEKDNLAKQVFQLK 801 (947)
Q Consensus 730 L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~-------sls-~~~~EkE~l~kqv~qLk 801 (947)
....|.-+.+++.++..+|..+.+...++..-++..+.++.-|+...+..|. ... -+-.+.++|..-|.+|+
T Consensus 1241 ~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk 1320 (1822)
T KOG4674|consen 1241 NLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLK 1320 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 3344466666666666666666666666666555555555555554444443 322 23455678999999999
Q ss_pred HHHHhhHHHHhhhhhhccc
Q 002247 802 DELQKKKEEINRTGKGLKK 820 (947)
Q Consensus 802 ~eL~kkE~~~~~~ek~lk~ 820 (947)
++|..++..+....++|..
T Consensus 1321 ~el~~ke~~~~el~~~~~~ 1339 (1822)
T KOG4674|consen 1321 EELEEKENLIAELKKELNR 1339 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888877766655433
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=0.00028 Score=86.04 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.9
Q ss_pred EeeeCCCC
Q 002247 36 SLVPDDVG 43 (947)
Q Consensus 36 SiVp~DtG 43 (947)
.+|.+.+|
T Consensus 26 ~~i~G~nG 33 (880)
T PRK03918 26 NLIIGQNG 33 (880)
T ss_pred EEEEcCCC
Confidence 34555555
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=0.0008 Score=86.40 Aligned_cols=52 Identities=8% Similarity=0.068 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHhHhHHHHHHHHHhhhhcccccchhchhhhhhhhhhhhh
Q 002247 889 FTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRN 940 (947)
Q Consensus 889 ~~~~~~~~~~lk~r~~~~e~el~~m~~rys~~sl~faevegerq~lvm~~~~ 940 (947)
+.++-.++..+..-...++.++......+..++-.+.....++..|.-.+..
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~ 1023 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL 1023 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444433
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.91 E-value=0.00083 Score=85.36 Aligned_cols=232 Identities=22% Similarity=0.307 Sum_probs=150.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHH------HHHHHHHHHHHHHHHHHhhhhh
Q 002247 587 KFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELS------DQLEQKDKQIQKMYLELDHSSS 660 (947)
Q Consensus 587 ~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~------~q~d~K~k~ie~m~~el~~kSk 660 (947)
.....+.-...+..+...+....+.++..+.++...++.++.+++..-.++. +++......++....++...-.
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 754 (1163)
T COG1196 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666777788888888888888888888887777776554333332 2222222233222222222222
Q ss_pred hhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhc--cccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHH
Q 002247 661 QLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG--KRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAK 738 (947)
Q Consensus 661 qle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~--~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk 738 (947)
.++.....-++....+...+..|+++++.+......+.+.. .+..+...+.-....+..+..+...+..+..+|+.+.
T Consensus 755 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~ 834 (1163)
T COG1196 755 ELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELE 834 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223334444444555566666665553222222111 1111122223455666777788888888888999999
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q 002247 739 QEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGL 818 (947)
Q Consensus 739 ~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~l 818 (947)
.+...+...+..++..-++.+..+..++.+++.++.....+.+.+..-..+++.|.+++-.++..+...+........++
T Consensus 835 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888899999999999999999999999999888999999998888888888777666654443
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.84 E-value=0.0011 Score=81.08 Aligned_cols=290 Identities=22% Similarity=0.283 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 002247 489 ESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTV 568 (947)
Q Consensus 489 e~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~ 568 (947)
.+.+..+-.+|..-...|+++...|..|+.++...+++- --+-+|++++. -|.-+++..|.| +.-
T Consensus 300 ~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~----~~Lqsdve~Lr-------~rle~k~~~l~k----k~~ 364 (775)
T PF10174_consen 300 KSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEA----EMLQSDVEALR-------FRLEEKNSQLEK----KQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHH-------HHHHHHHHHHHH----HHH
Confidence 444555556667777778888888888888887776543 35667777764 355556666665 345
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh-----ccHHHHHHHHHH
Q 002247 569 TAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG-----VKLQELSDQLEQ 643 (947)
Q Consensus 569 ~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e-----~kl~eL~~q~d~ 643 (947)
..+.+|+|..++..+|.-+.|..++.- .+++.|+...--||+.|..=..+|...++-.. ++...+...++.
T Consensus 365 ~~~~~qeE~~~~~~Ei~~l~d~~d~~e----~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEe 440 (775)
T PF10174_consen 365 QIEKLQEEKSRLQGEIEDLRDMLDKKE----RKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEE 440 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 678999999999999999888877643 35666766666677777665555665555444 444455555555
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhc--cccCCCCCccccchhhhhHh
Q 002247 644 KDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG--KRRDDNKPKVSTGETDMLIQ 721 (947)
Q Consensus 644 K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~--~~~e~e~~k~s~~e~e~~l~ 721 (947)
=....+++...|+......+ +-..+-.+.+..|+..|++.++.|-.+.+.---+. .+.+.-.+ =...-
T Consensus 441 a~~eker~~e~l~e~r~~~e---~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l-------~s~~~ 510 (775)
T PF10174_consen 441 ALREKERLQERLEEQRERAE---KERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKL-------ASSQE 510 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH-------hhccc
Confidence 55555555555543332222 22223457888888888888888887655422111 11111111 11111
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhH-------HHHHHHHHHHHHHHHhhHhHHHHhhHHHH
Q 002247 722 KWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNL-------QAEVENLKVQQNKLQNSLIEEKLEKDNLA 794 (947)
Q Consensus 722 ~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L-------~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~ 794 (947)
+.+.++..|.-.+...+++..++...|...+... +.-..|+.| ..+++.-++..+-|-..|.+-+.||...-
T Consensus 511 K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~-e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke 589 (775)
T PF10174_consen 511 KKDSEIERLEIELEKKREKHEKLEKQLEKLRANA-ELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKE 589 (775)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCH-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2233444555555666677777777666643322 222233444 44555556677788888888888888999
Q ss_pred HHHHHHHHHHHhhH
Q 002247 795 KQVFQLKDELQKKK 808 (947)
Q Consensus 795 kqv~qLk~eL~kkE 808 (947)
++|-+|.++|++--
T Consensus 590 ~ki~~LekeLek~~ 603 (775)
T PF10174_consen 590 KKIGELEKELEKAQ 603 (775)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887643
No 18
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.77 E-value=0.0018 Score=79.50 Aligned_cols=477 Identities=20% Similarity=0.213 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhcc-----ccHHHHhhhh
Q 002247 249 VEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNS-----IDIAEIERRL 323 (947)
Q Consensus 249 iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k-----~~~~~~~~~l 323 (947)
--.|+-|+++++-+-. +||.|+-.+.-.-.+|.-|+-.++.||+.|++|++..-.-.+ .++-.+..--
T Consensus 172 ~~hL~velAdle~kir-------~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ 244 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIR-------TLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQ 244 (1195)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHh
Confidence 4467888888876554 577777788888889999999999999999999997755333 1222111100
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHH
Q 002247 324 QSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALE 403 (947)
Q Consensus 324 q~e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le 403 (947)
--.|++. -+|=--++.|-|+ ++...-+-|.=|+ +==+||+.+- .
T Consensus 245 aer~d~~--ykerlmDs~fykd-------RveelkedN~vLl----eekeMLeeQL-----------------------q 288 (1195)
T KOG4643|consen 245 AERPDTT--YKERLMDSDFYKD-------RVEELKEDNRVLL----EEKEMLEEQL-----------------------Q 288 (1195)
T ss_pred hhcCCCc--cchhhhhhHHHHH-------HHHHHHhhhHHHH----HHHHHHHHHH-----------------------H
Confidence 0001100 1111122334444 2222223332221 1123333221 1
Q ss_pred HHHhh---cCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH-----HHhhhhhh
Q 002247 404 ALAKE---RNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKI-----QQQESMKS 475 (947)
Q Consensus 404 ~Lvk~---~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~-----q~Q~~k~q 475 (947)
.+... +.-+.+|-.+++||.||..+.+.-+...++|-.-+.+|... ++|+++-|.|.++ +.-+
T Consensus 289 ~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q-----~eqL~~~~ellq~~se~~E~en---- 359 (1195)
T KOG4643|consen 289 KLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ-----KEQLDGQMELLQIFSENEELEN---- 359 (1195)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHHhhhhhhHhhhhhcchhhhh----
Confidence 12222 22367899999999999887776666666666665555443 4777777777776 2222
Q ss_pred hhchhhhHhHHHHHHHHHHHHHHHHHHHH------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHH
Q 002247 476 RECIESLATIKELESQSERLEDKIKQQSE------EYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQE 549 (947)
Q Consensus 476 ~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~------efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqE 549 (947)
++...-..+|.+ -.-+...|.+++. .-+.+....=.=.-.++..++-|+.+..-++.-+-.+++.+.+.|
T Consensus 360 ---~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 360 ---ESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred ---hhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333332 1112222332221 111111111111123445556677778888888888888887777
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHH------HHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 002247 550 QRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKL------AMKAMTEANEQRMQKAHLEEMLQKANDEL 623 (947)
Q Consensus 550 qRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~------~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL 623 (947)
-++--+- ..-+.||+|..-...-|+.---+||-+ .-+-..+..+|+.+-..|=..|+....+|
T Consensus 436 d~~K~L~-----------~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~el 504 (1195)
T KOG4643|consen 436 DLEKKLQ-----------FELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLEL 504 (1195)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6663332 223345555544444443332222221 23445566777777777777777777777
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 002247 624 SLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKR 703 (947)
Q Consensus 624 ~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~ 703 (947)
.. ......+|..|+..+.-+.+-...-+ +-+++..--|..++.+|.+.+..|+... .
T Consensus 505 sr----l~a~~~elkeQ~kt~~~qye~~~~k~------------------eeLe~~l~~lE~ENa~LlkqI~~Lk~t~-q 561 (1195)
T KOG4643|consen 505 SR----LHALKNELKEQYKTCDIQYELLSNKL------------------EELEELLGNLEEENAHLLKQIQSLKTTS-Q 561 (1195)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHh-H
Confidence 66 34445555555555444443322222 2233344444444444444444444310 0
Q ss_pred cCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHH-Hhhhc-----ccchhHHHHhhHHHHHHHHHHHHH
Q 002247 704 RDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEEL-ISMRS-----LKGENEMLIGNLQAEVENLKVQQN 777 (947)
Q Consensus 704 ~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL-~~~k~-----~kdekE~~i~~L~~E~e~Lk~q~~ 777 (947)
+- .++-...+.+| ....+-..+...+..++-+-+++..++ |--++ .+-.-+.+-..+..=+-+=|++-.
T Consensus 562 n~-~~LEq~~n~lE----~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kll~~Kkdr~r 636 (1195)
T KOG4643|consen 562 NG-ALLEQNNNDLE----LIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKLLKEKKDRNR 636 (1195)
T ss_pred HH-HHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhhcchhHHHHH
Confidence 00 00000011111 111222222222223333333333332 11111 111111111111111222234444
Q ss_pred HHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccc
Q 002247 778 KLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKK 820 (947)
Q Consensus 778 ~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~ 820 (947)
..+.+|--+..+-+-+++.+.+|.-.++.+-+++-.+....-+
T Consensus 637 ee~kel~~ekl~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~lE 679 (1195)
T KOG4643|consen 637 EETKELMDEKLQVEDLQEKLRELPLEFKTKNDEILMVGSNILE 679 (1195)
T ss_pred HHHhhccccchhHHHHHHHHHhCchhhccccchhhhhhhhhhh
Confidence 4555555444566789999999999999666656665444444
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=98.66 E-value=0.0038 Score=76.41 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=10.5
Q ss_pred ccCCccccccceecchhhh
Q 002247 91 TGSSKSGFLGEASIDFADF 109 (947)
Q Consensus 91 ~GSSkSgiLGEasINlAdY 109 (947)
.||-||+||. .|.||=|
T Consensus 32 nG~GKStil~--ai~~~l~ 48 (880)
T PRK03918 32 NGSGKSSILE--AILVGLY 48 (880)
T ss_pred CCCCHHHHHH--HHHHHhc
Confidence 6787887774 3444444
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.55 E-value=0.0073 Score=74.15 Aligned_cols=138 Identities=22% Similarity=0.234 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhh
Q 002247 247 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSE 326 (947)
Q Consensus 247 ~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e 326 (947)
..|+.=-+.+++++|..+.++.|++.|+..+.--..-...+..++.+.+..+...|..|++++.......+... .++.+
T Consensus 231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~-~~qt~ 309 (775)
T PF10174_consen 231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELE-ALQTR 309 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 46777788899999999999999999999887666667788889999999999999999999987762222211 13333
Q ss_pred hh-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccc
Q 002247 327 EH-LKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSL 385 (947)
Q Consensus 327 ~~-~~~l~eElr~El~yEKe~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~l 385 (947)
.. .-....+.|+-+.-.|++.+...-.=...|-.+=.|.+=+-.=+.+|+++..-|..+
T Consensus 310 l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~ 369 (775)
T PF10174_consen 310 LETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKL 369 (775)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333445556666667776666666666667666667766666667777666555543
No 21
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.54 E-value=0.0024 Score=75.08 Aligned_cols=118 Identities=20% Similarity=0.323 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 002247 495 LEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQ 574 (947)
Q Consensus 495 LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ 574 (947)
...+|..-..+|...+..+.....++..+.+|+ +++..++..-..+|..| .+.+ ..|.-.|+-|.
T Consensus 114 ~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~-----------~~~~~~k~~A~~~aeea---~~~a-~~~~~kve~L~ 178 (522)
T PF05701_consen 114 WKAELESAREQYASAVAELDSVKQELEKLRQEL-----------ASALDAKNAALKQAEEA---VSAA-EENEEKVEELS 178 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHH
Confidence 345556667777777777744444444444433 33333343333444333 3222 24566778888
Q ss_pred HHHHHHHHHhhhh---hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhh
Q 002247 575 DEFRRLSVDMASK---FDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQN 630 (947)
Q Consensus 575 ~e~~~LS~qm~s~---~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~ 630 (947)
.|+..|=.-+-+. +.+.+.-.+.++.+-+.. ...++..|..+..+|..+..++
T Consensus 179 ~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~---~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 179 KEIIALKESLESAKLAHIEAEEERIEIAAEREQD---AEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 8877665544443 333443333333332222 2233444444444444444444
No 22
>PRK01156 chromosome segregation protein; Provisional
Probab=98.50 E-value=0.0069 Score=74.80 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=37.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh-HHHHhhHHHHHHHHHHHHHHH
Q 002247 727 RDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI-EEKLEKDNLAKQVFQLKDELQ 805 (947)
Q Consensus 727 r~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls-~~~~EkE~l~kqv~qLk~eL~ 805 (947)
...+..++..++.+...+.+.+.....++.+.... ++..|+..++++.+... -+..+......++-.+..++.
T Consensus 524 ~~~l~~~l~~~~~~l~~le~~~~~~~~l~~~~~~~------~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~ 597 (895)
T PRK01156 524 IESARADLEDIKIKINELKDKHDKYEEIKNRYKSL------KLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLN 597 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333222 25555555555554322 111233444444444444444
Q ss_pred hhHHHHhhhhhh
Q 002247 806 KKKEEINRTGKG 817 (947)
Q Consensus 806 kkE~~~~~~ek~ 817 (947)
..+..+..++.+
T Consensus 598 ~l~~~l~~le~~ 609 (895)
T PRK01156 598 DLESRLQEIEIG 609 (895)
T ss_pred HHHhhHHHHHHH
Confidence 444444444443
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.43 E-value=0.0005 Score=80.83 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=54.8
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHH-----------HHHhhHhHHHHh
Q 002247 721 QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQN-----------KLQNSLIEEKLE 789 (947)
Q Consensus 721 ~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~-----------~Lk~sls~~~~E 789 (947)
..|..||..|...+...+++++++..|+..+...=+++-.--..|+.++...+..-. +|+.+|--...|
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkE 432 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKE 432 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777888888888876543333333334456666655443332 566666666667
Q ss_pred hHHHHHHHHHHHHHHHhhHHHH
Q 002247 790 KDNLAKQVFQLKDELQKKKEEI 811 (947)
Q Consensus 790 kE~l~kqv~qLk~eL~kkE~~~ 811 (947)
||.|+.--.-|......-|..+
T Consensus 433 KEql~~EkQeL~~yi~~Le~r~ 454 (546)
T PF07888_consen 433 KEQLQEEKQELLEYIERLEQRL 454 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7766655555555555444443
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.41 E-value=4.7e-08 Score=119.49 Aligned_cols=225 Identities=24% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhcc-ccHHHHhhhhhhhhhHHHHHHHHH
Q 002247 259 MMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNS-IDIAEIERRLQSEEHLKFLQEEIR 337 (947)
Q Consensus 259 L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k-~~~~~~~~~lq~e~~~~~l~eElr 337 (947)
|.-+.-+-+.|+..+...+-.+....+.|.+.+..|...-+-|..+++.=|.... .+.++ . ++..-+++|+
T Consensus 9 l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r--~------dL~~ELe~l~ 80 (859)
T PF01576_consen 9 LEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQR--R------DLSEELEELK 80 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHH
Confidence 3344455567888888888888888889998888888888888888887666543 22111 1 1222345555
Q ss_pred HHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCC-chhhH
Q 002247 338 EELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNK-DKEVD 416 (947)
Q Consensus 338 ~El~yEKe~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~-~~E~~ 416 (947)
+.|.= ......-...+.|-.| .||.-.=++||+.--+.-..|+.|-.++...- .+-..-++.+-+.... +++-.
T Consensus 81 ~~Lee-~~~~t~aq~E~~kkrE--~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~--~eL~eqle~lqk~k~~lEK~k~ 155 (859)
T PF01576_consen 81 ERLEE-AGGATQAQIELNKKRE--AELAKLRRDLEEANLQHEATLAELRKKHQDAV--AELNEQLEQLQKQKAKLEKEKS 155 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-hhCcHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55421 1112223333444444 35555555665543333333433322111000 0001112222222221 34455
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHH
Q 002247 417 MLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLE 496 (947)
Q Consensus 417 ~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE 496 (947)
.|..-+.+|...++..-+.+-..+.++.+++-.+.+|.- |+.+.+ ..+++|.++..+|.
T Consensus 156 ~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~-------klee~e--------------r~~~el~~~k~kL~ 214 (859)
T PF01576_consen 156 QLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQA-------KLEESE--------------RQRNELTEQKAKLQ 214 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH-------HHHHHH--------------HHHHHHHHHHHHHH
Confidence 555666666666655555555555555555555444433 333322 23345555555555
Q ss_pred HHHHHHHHHHhhhhhhHHHHH
Q 002247 497 DKIKQQSEEYSESLISINELE 517 (947)
Q Consensus 497 ~eLkeQ~~efSe~l~tI~~Le 517 (947)
.++......+.+.-..+..|.
T Consensus 215 ~E~~eL~~qLee~e~~~~~l~ 235 (859)
T PF01576_consen 215 SENSELTRQLEEAESQLSQLQ 235 (859)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444443333
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.41 E-value=0.0047 Score=72.92 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=49.1
Q ss_pred hHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHH
Q 002247 719 LIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVF 798 (947)
Q Consensus 719 ~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~ 798 (947)
-++...+|++-|..++...+|-- +--|...+..-.|+...++.+|-|=|.|.....+|++.+-. |...+-
T Consensus 386 ~lqEer~E~qkL~~ql~ke~D~n---~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~-------Le~r~~ 455 (546)
T PF07888_consen 386 HLQEERMERQKLEKQLGKEKDCN---RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIER-------LEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 44555566666666665433322 22233333334457788888888888888888888887653 333333
Q ss_pred HHHHHHHhhHHHH
Q 002247 799 QLKDELQKKKEEI 811 (947)
Q Consensus 799 qLk~eL~kkE~~~ 811 (947)
.+ .+=+.+|+++
T Consensus 456 ~~-~~~~~~~~~~ 467 (546)
T PF07888_consen 456 KV-ADEKWKEAAA 467 (546)
T ss_pred Hh-hhhhhhcccc
Confidence 33 5666777765
No 26
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.30 E-value=1.5e-06 Score=104.66 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=69.5
Q ss_pred HhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccC--CCC-chhhh-----chh
Q 002247 762 IGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYG--GPV-SDAQM-----TSM 833 (947)
Q Consensus 762 i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~--gr~-~~~tk-----~~~ 833 (947)
...+..++..++.+...-..+++.-..+...|+.++..|+.++.+-+..+...+.+|.... |.. ...|+ -||
T Consensus 477 ~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP 556 (722)
T PF05557_consen 477 NETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNP 556 (722)
T ss_dssp -----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-H
T ss_pred ccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCc
Confidence 3445555666666666555555544444555777777777777777777777777766522 211 11222 234
Q ss_pred HHHHh---hhhhhhhhhhhhhchhhhhhHHHhhhhhhccccccccccccccCCCCCCchHHHHHHHHHHHHHhHhHHHHH
Q 002247 834 KERLR---KGQKKLNKAELETSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETEL 910 (947)
Q Consensus 834 ~nk~~---~~~i~~~e~~~e~s~~~~~~eke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~r~~~~e~el 910 (947)
...+. ...+..+.++++..-.+.. .++........+.|. ..+.-.-.|+..|+......+...
T Consensus 557 ~~~~~~~k~~~l~~L~~En~~L~~~l~---------~le~~~~~~~~~~p~-----~~~~~~~~e~~~l~~~~~~~ekr~ 622 (722)
T PF05557_consen 557 TSKAEQIKKSTLEALQAENEDLLARLR---------SLEEGNSQPVDAVPT-----SSLESQEKEIAELKAELASAEKRN 622 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHTTTT---------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcccCCCCCcccccc-----hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 43222 2333444455555444331 111111110111111 223344567888888888889999
Q ss_pred HHHHhhhhcccccchhc
Q 002247 911 KEMQERYSEISLKFAEV 927 (947)
Q Consensus 911 ~~m~~rys~~sl~faev 927 (947)
..|.+=|..=|..|-+|
T Consensus 623 ~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 623 QRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999888888765
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.21 E-value=0.0059 Score=66.28 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 002247 487 ELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN 566 (947)
Q Consensus 487 eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~n 566 (947)
.++.++.++..++..-..+|.+.......++.++. ++-.+++..+.+++..+.++....+-|.-.+-.+
T Consensus 72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~-----------~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELE-----------SLRKDLDEETLARVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555555555555444444444444 4447777777777777777777666665554444
Q ss_pred hhhHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHH
Q 002247 567 TVTAERLQDEF-RRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKD 645 (947)
Q Consensus 567 a~~~e~LQ~e~-~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~ 645 (947)
.-.+.-|+..+ ...++.|.+.+... ...|+.+ +| .+.+....+-..++. .-|..|+.++..+...-.
T Consensus 141 eeEi~~L~~~~~~~~~~e~~~~~~~d---L~~~L~e---iR---~~ye~~~~~~~~e~e---~~y~~k~~~l~~~~~~~~ 208 (312)
T PF00038_consen 141 EEEIEELREQIQSSVTVEVDQFRSSD---LSAALRE---IR---AQYEEIAQKNREELE---EWYQSKLEELRQQSEKSS 208 (312)
T ss_dssp HHHHHTTSTT-------------------HHHHHHH---HH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccccceeeccccccc---chhhhhh---HH---HHHHHHHhhhhhhhh---hhcccccccccccccccc
Confidence 43344444333 23333333322221 2333322 33 445666666666544 468888888888887777
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhh
Q 002247 646 KQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNR 725 (947)
Q Consensus 646 k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~ 725 (947)
..+...-.|+.....+++ .+..+|.-|++.+..|...+..| -......++....
T Consensus 209 ~~~~~~~~E~~~~r~~~~-----------~l~~el~~l~~~~~~Le~~l~~l---------------e~~~~~~~~~~~~ 262 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQ-----------SLQAELESLRAKNASLERQLREL---------------EQRLDEEREEYQA 262 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhh-----------HhhhhhhccccchhhhhhhHHHH---------------HHHHHHHHHHHHH
Confidence 777666666644444333 45555555555555555433332 1122334444455
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchh
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGEN 758 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdek 758 (947)
.+..|+.+++.++.+......+...+-..|=-+
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555555555555555555444444333
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=98.17 E-value=0.052 Score=67.27 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhh
Q 002247 248 SVEKLKNEIAVMMR---QVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQ 311 (947)
Q Consensus 248 ~iE~LK~E~~~L~R---~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~ 311 (947)
.+..+++++..+.. ......-++..+.+++..-...-..+..++..++.+-+.++.+++.|+..
T Consensus 174 ~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~ 240 (895)
T PRK01156 174 VIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA 240 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444554444422 22334445556666666666666666666666777777777777666643
No 29
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.16 E-value=0.043 Score=65.90 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=80.7
Q ss_pred ccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhH---HHHhhHHHHHHHHHHHHHHHHhhHhHHHH
Q 002247 712 STGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENE---MLIGNLQAEVENLKVQQNKLQNSLIEEKL 788 (947)
Q Consensus 712 s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE---~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~ 788 (947)
.+.+.++++....-|+.-|.-+|++|..+---+-+||-+|....++.+ .++-.+..+++.|+-.|+-+-.+.-+...
T Consensus 853 t~eh~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~E 932 (961)
T KOG4673|consen 853 TSEHYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDE 932 (961)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 466899999999999999999999999998888889888887766544 46677888999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 002247 789 EKDNLAKQVFQLKDELQKK 807 (947)
Q Consensus 789 EkE~l~kqv~qLk~eL~kk 807 (947)
|.|.|+--+.-||.-.+--
T Consensus 933 e~EELrlDl~dlK~mYk~Q 951 (961)
T KOG4673|consen 933 ELEELRLDLVDLKEMYKEQ 951 (961)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 9999998888887655443
No 30
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.02 E-value=0.057 Score=67.16 Aligned_cols=119 Identities=23% Similarity=0.252 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHh---hhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhccc
Q 002247 679 EIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQ---KWNRERDDLEKKFASAKQEAAKAHEELISMRSLK 755 (947)
Q Consensus 679 ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~---~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~k 755 (947)
.-.+|+.|.++|..++...-..+-+.. .-.++.+-++. ....+-.+|.-.|.-+++=......+|+++-..+
T Consensus 437 ~~K~L~~E~ekl~~e~~t~~~s~~rq~-----~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~ 511 (1195)
T KOG4643|consen 437 LEKKLQFELEKLLEETSTVTRSLSRQS-----LENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALK 511 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777766544442221 01122222221 1222233333445555666666777888888899
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHH
Q 002247 756 GENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKD 802 (947)
Q Consensus 756 dekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~ 802 (947)
++...-+......++-+..+|-.|-..++.-+.|...|.+||.-|+-
T Consensus 512 ~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 512 NELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=0.033 Score=70.09 Aligned_cols=336 Identities=21% Similarity=0.330 Sum_probs=200.3
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHHh-------hHHHHHHHhHHHHHHHHHH----HHHHHHHHhhhhhhhhhhhHHHHHh
Q 002247 402 LEALAKERNKDKEVDMLKQKIRDQG-------DEIQFFKKHAEDLEIYIKQ----LTEDCQVLEQENQCLTSKLEKIQQQ 470 (947)
Q Consensus 402 le~Lvk~~~~~~E~~~L~qKI~dL~-------~Eie~ykke~E~Le~kmeQ----Le~Dye~LkqEN~dls~KLeq~q~Q 470 (947)
|+|++....-.--|..+.+.+..|. +-...+.++++.|+.-+.. |....+.+.--|+.+-|.|
T Consensus 256 LEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~------ 329 (1293)
T KOG0996|consen 256 LEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYIL------ 329 (1293)
T ss_pred HHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 5566655554444555555555442 2245555666666654332 2222222222222222222
Q ss_pred hhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHH
Q 002247 471 ESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS-ESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQE 549 (947)
Q Consensus 471 ~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efS-e~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqE 549 (947)
+-+..-|.........++.+|+.-...|- ++...+...+ .-.+++.+++......+.++.....+.|
T Consensus 330 --------~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e----~~~~~~~e~~~~~kn~~~~~k~~~~~~e 397 (1293)
T KOG0996|consen 330 --------YESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNE----AVKKEIKERAKELKNKFESLKKKFQDLE 397 (1293)
T ss_pred --------HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344555666677788888888888777 6666664444 4456677788888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhh
Q 002247 550 QRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQ 629 (947)
Q Consensus 550 qRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~ 629 (947)
.+-.+-++.|+..- .-.+.|.+++...+. +.++-|++--+|-.+..++.....+|++.+++++.+|.-+++-
T Consensus 398 ~~~vk~~E~lK~~~----~k~kKleke~ek~~~----~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~ 469 (1293)
T KOG0996|consen 398 REDVKREEKLKRLT----SKIKKLEKEIEKARR----KKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDS 469 (1293)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHh----hHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777765432 224556666655544 4567788888888899999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCC
Q 002247 630 NGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKP 709 (947)
Q Consensus 630 ~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~ 709 (947)
+..+-+-++.+++...+.|...+..+ . ++ ...+..+.-|..+|...-+...+.- +.+
T Consensus 470 l~~~t~~~~~e~~~~ekel~~~~~~~-------n---~~-~~e~~vaesel~~L~~~~~~~~~~~------------e~l 526 (1293)
T KOG0996|consen 470 LKQETEGIREEIEKLEKELMPLLKQV-------N---EA-RSELDVAESELDILLSRHETGLKKV------------EEL 526 (1293)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHH-------H---HH-HHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Confidence 99888888888887777774443333 1 11 1223345555666655554444422 222
Q ss_pred ccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHh
Q 002247 710 KVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLE 789 (947)
Q Consensus 710 k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~E 789 (947)
+.++.-....++...-+...+..+|.++|+|......+|..++. ..+++.+.|-.++....+++.+++..-..
T Consensus 527 k~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~-------e~~~~~~~~~~~rqrveE~ks~~~~~~s~ 599 (1293)
T KOG0996|consen 527 KGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRK-------EERNLKSQLNKLRQRVEEAKSSLSSSRSR 599 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 22233333333444444555555555555555555555544432 23455556666666666677766655555
Q ss_pred hHHH
Q 002247 790 KDNL 793 (947)
Q Consensus 790 kE~l 793 (947)
..-|
T Consensus 600 ~kVl 603 (1293)
T KOG0996|consen 600 NKVL 603 (1293)
T ss_pred hHHH
Confidence 4433
No 32
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.95 E-value=1.7e-06 Score=103.99 Aligned_cols=204 Identities=27% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHH
Q 002247 285 QDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAEL 364 (947)
Q Consensus 285 qdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQESN~EL 364 (947)
.+|..+|..|..|++.|..|++.|.....-.+.... ++. .+...-.+.|+.|+...++-+.++
T Consensus 196 ~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~-------~~~----------~~~~~~~~~l~~ql~~L~~el~~~ 258 (713)
T PF05622_consen 196 HELEKQISDLQEEKESLQSENEELQERLSQLEGSSE-------EPS----------QHLSVELADLRAQLRRLREELERL 258 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC-------Ccc----------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888999998888877754331110000 000 010111345677777777777777
Q ss_pred HHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhh-cCCchhhHHHHHHHHH---HhhHHHHHH---HhHH
Q 002247 365 ILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKE-RNKDKEVDMLKQKIRD---QGDEIQFFK---KHAE 437 (947)
Q Consensus 365 vlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~-~~~~~E~~~L~qKI~d---L~~Eie~yk---ke~E 437 (947)
--+..|++.-++....+|..|-..+.+... .... ..--||++.|+++-.. +..+++.|| .|..
T Consensus 259 e~~~~d~~~~~e~le~ei~~L~q~~~eL~~----------~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~ 328 (713)
T PF05622_consen 259 EEQRDDLKIELEELEKEIDELRQENEELQA----------EAREARALRDELDELREKADRADKLENEVEKYKKKLEDLE 328 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778877777777777776643332111 1111 1124678888875555 567899997 6778
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 002247 438 DLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELE 517 (947)
Q Consensus 438 ~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le 517 (947)
+|+.+++.|+.++..|-+-+..+ |+ +++. +.+.-..+..++.++..|+.++.....+.-.....+..|+
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~L----Ee-el~~------~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ 397 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAML----EE-ELKK------ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLE 397 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HH-HHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998887754433 32 2222 2233345666777777777777776666655566666666
Q ss_pred HHHHHHHHH
Q 002247 518 CQVKELKRE 526 (947)
Q Consensus 518 ~q~~sLekE 526 (947)
..+..|..+
T Consensus 398 ek~~~l~~e 406 (713)
T PF05622_consen 398 EKLEALEEE 406 (713)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 666666554
No 33
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.94 E-value=0.092 Score=62.16 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=26.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhh
Q 002247 761 LIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRT 814 (947)
Q Consensus 761 ~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ 814 (947)
.+..+...+..+.......|.-......|..+++..+-+.+..+..-+..+...
T Consensus 366 ~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 366 AMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455555555555555555444444433
No 34
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.91 E-value=2.2e-06 Score=105.12 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHH
Q 002247 248 SVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQ 307 (947)
Q Consensus 248 ~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~Eq 307 (947)
.++.+..-+..|.|...-+...|+.++.++-.+++....|...+..+..|++.|+..++.
T Consensus 223 qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqlee 282 (859)
T PF01576_consen 223 QLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEE 282 (859)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 344455555556665566677788888899999999999999888888888888877764
No 35
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.13 Score=62.71 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHhhHHHHHH
Q 002247 331 FLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLE 376 (947)
Q Consensus 331 ~l~eElr~El~yEKe~NaNL~lQLqKTQESN~ELvlavqDLEemLE 376 (947)
.-.+++++++.=-+.++.++..-|.+.|.-+.+++.-+.++..-|.
T Consensus 146 t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~ 191 (698)
T KOG0978|consen 146 TELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELR 191 (698)
T ss_pred hhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468888888888899999999999999988888887777665553
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.81 E-value=0.28 Score=63.41 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=50.4
Q ss_pred HHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 002247 617 QKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLI-DEHKSEAQKHEALSTEIHMLRTEIEKLRKEQY 695 (947)
Q Consensus 617 qk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle-~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~ 695 (947)
.++.+.+..-+.+.+.+++.|..++..-.++++++..++...-+++. ..+.+-.++..++...|..+++.|...+.+..
T Consensus 670 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 670 QEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566667777777777777777777777755555554 33344556666777777777777766665444
Q ss_pred h
Q 002247 696 N 696 (947)
Q Consensus 696 ~ 696 (947)
.
T Consensus 750 ~ 750 (1201)
T PF12128_consen 750 E 750 (1201)
T ss_pred H
Confidence 3
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.71 E-value=0.041 Score=59.84 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=30.8
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Q 002247 600 TEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLEL 655 (947)
Q Consensus 600 ~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el 655 (947)
++.+.|+.+|..||..+......+..-...|...+..|-.++..-...|.++..+.
T Consensus 230 ~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey 285 (312)
T PF00038_consen 230 AELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREY 285 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 34445666666666666666666655555555555555555555444444444333
No 38
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.38 Score=57.44 Aligned_cols=152 Identities=18% Similarity=0.268 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHH
Q 002247 417 MLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLE 496 (947)
Q Consensus 417 ~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE 496 (947)
.|++-...++.+|+.+++.+++|..+|...+.+=.-. =+.+=+-.- ||+----..+.+++++++.+.++
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~------eslre~~~~-----L~~D~nK~~~y~~~~~~k~~~~~ 293 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKE------ESLREKKAR-----LQDDVNKFQAYVSQMKSKKQHME 293 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchH------HHHHHHHHH-----HHhHHHHHHHHHHHHHhhhHHHH
Confidence 3444445567889999999999999988655441111 000111111 23333345678889999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH---HHHHHHHhhhhhhhHHHH
Q 002247 497 DKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRA---EEELRKTRWKNTVTAERL 573 (947)
Q Consensus 497 ~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~a---eeaLrk~r~~na~~~e~L 573 (947)
+.|.....+.-.---.+..|+.++..|..-++.|- ---+|+.-|-+++.+..+-...+ -+.|.|-=|+--..+++.
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~-iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG-ISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999988888889999999999999999993 33578899988888887755443 355566666665555554
Q ss_pred HHHHHHH
Q 002247 574 QDEFRRL 580 (947)
Q Consensus 574 Q~e~~~L 580 (947)
=+++..+
T Consensus 373 f~~le~~ 379 (581)
T KOG0995|consen 373 FKELEKK 379 (581)
T ss_pred HHHHHHH
Confidence 4444433
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.49 E-value=0.73 Score=59.72 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=18.5
Q ss_pred ceeeeeee---cc-CCccccccceecchhhhhcccC
Q 002247 83 KIYHFIVS---TG-SSKSGFLGEASIDFADFAAETE 114 (947)
Q Consensus 83 ~iykfvVs---~G-SSkSgiLGEasINlAdYa~a~k 114 (947)
.+|..|++ .| .--..|++ +.-....|++...
T Consensus 80 ~~~~vvl~~~s~g~~V~YRFId-~~y~~e~fi~~~~ 114 (1201)
T PF12128_consen 80 QLCCVVLSRKSDGRGVQYRFID-APYQRELFIDENN 114 (1201)
T ss_pred ceeEEEEeecCCCCceeeeecc-CccchhhcccccC
Confidence 36777776 23 23355666 5666667777665
No 40
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.48 E-value=4.9e-05 Score=91.74 Aligned_cols=347 Identities=22% Similarity=0.251 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhHHHHHH----HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHH
Q 002247 414 EVDMLKQKIRDQGDEIQFFK----KHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELE 489 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~yk----ke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe 489 (947)
++..++.+|.-|-.|++.++ ..+-.++..+..+...|+...+.++++-.++..-.-+...++.|-.........++
T Consensus 62 e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k 141 (722)
T PF05557_consen 62 ELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLK 141 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555443 33334555555566666666666665555544432222222222222222222222
Q ss_pred H----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002247 490 S----QSERLEDKIKQQSEEYSESLISINELECQVKELK---RELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKT 562 (947)
Q Consensus 490 ~----q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLe---kELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~ 562 (947)
. .+.+|..+...+. .+....+..|.+++..|. ...+.++..++.++.++.....++..++..++..+...
T Consensus 142 ~~le~~~~~L~~E~~~~~---~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 142 RKLEEEKRRLQREKEQLL---EEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222222222 222234445555555555 44455566666666666666665555555544443332
Q ss_pred hh------hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHH
Q 002247 563 RW------KNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQE 636 (947)
Q Consensus 563 r~------~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~e 636 (947)
+- .....+.+|+.++...+... .+++.+ .+.-...+.||.....-..|++..+..++.. +=
T Consensus 219 ~~~q~~~~e~e~~i~~Le~el~~~~~~~---------~i~k~l---~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~-el 285 (722)
T PF05557_consen 219 QASQASLAEAEQKIKELEAELKDQESDA---------EINKEL---KEQLAHIRELEKENRRLREELKHLRQSQENV-EL 285 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHhhHH---------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HH
Confidence 22 23445555555544443321 122222 1222344556666666666666655544421 10
Q ss_pred HH---HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccc
Q 002247 637 LS---DQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVST 713 (947)
Q Consensus 637 L~---~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~ 713 (947)
|- .-+..|... .+.+-.++..|..++.+|..+...|.--. .. .
T Consensus 286 LeEe~~sLq~kl~~-------------------------~E~~~~el~~lq~e~~~Le~el~sW~sl~-~~--------~ 331 (722)
T PF05557_consen 286 LEEEKRSLQRKLER-------------------------LEELEEELAELQLENEKLEDELNSWESLL-QD--------I 331 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--------C
Confidence 00 111112222 22344455667777777777777663221 11 0
Q ss_pred chhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHH
Q 002247 714 GETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNL 793 (947)
Q Consensus 714 ~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l 793 (947)
+. ...--..+...|..++.+...+.+.+..+...-..++..+..|..++..+..+..+++..+.........|
T Consensus 332 ~~-------~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RL 404 (722)
T PF05557_consen 332 GL-------EFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRL 404 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-------CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00111345666777788888888888888888888888888888888888888888888877665556666
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhh
Q 002247 794 AKQVFQLKDELQKKKEEINRTGKG 817 (947)
Q Consensus 794 ~kqv~qLk~eL~kkE~~~~~~ek~ 817 (947)
++|+.=+-.|..---+.+.+.++.
T Consensus 405 erq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 405 ERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 666665555554444444444443
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.71 Score=58.88 Aligned_cols=130 Identities=24% Similarity=0.338 Sum_probs=72.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002247 671 QKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELIS 750 (947)
Q Consensus 671 ~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~ 750 (947)
+..+.+.+.|++|.++|.+++.. +.-.+-.++......++|+++|..+.+|+..+.+++..
T Consensus 907 ~kv~~~~~~~~~l~~~i~k~~~~-------------------i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~ 967 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADIAKLTVA-------------------IKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKG 967 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH-------------------HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666666651 22223345555666666777777777777766666666
Q ss_pred hhcccchhH-------HHHhhHHHHHHHHHHHHHHHHhhHhHHHH-hhHHHHHHHHHHHHHHHhhHHHHhhhhhhccc
Q 002247 751 MRSLKGENE-------MLIGNLQAEVENLKVQQNKLQNSLIEEKL-EKDNLAKQVFQLKDELQKKKEEINRTGKGLKK 820 (947)
Q Consensus 751 ~k~~kdekE-------~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~-EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~ 820 (947)
++.-..|.+ ..|.-+.+++..++.++.++++++.+=.. ..+ +.-++....++|..-+....-+++.++.
T Consensus 968 ~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~~k~~~~ 1044 (1293)
T KOG0996|consen 968 LEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQPEKELKK 1044 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhHHHhhCc
Confidence 555444433 34444555555555555555555543333 223 5556666666666666655556655443
No 42
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.42 E-value=0.59 Score=56.83 Aligned_cols=179 Identities=26% Similarity=0.299 Sum_probs=91.3
Q ss_pred hhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--------------HHHHHHHH----------
Q 002247 474 KSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVK--------------ELKRELDK---------- 529 (947)
Q Consensus 474 ~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~--------------sLekELe~---------- 529 (947)
+..||+.-=..|+.|..++..-+++|+.....|.++...|+.|+.... +|.++|+.
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~ 310 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESES 310 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777788888888888888888888888888887775443 33333331
Q ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhH
Q 002247 530 QAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQK 609 (947)
Q Consensus 530 Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk 609 (947)
--..++.++++.+..-..--+-....-+-++++..-.+.-+..||-=+-.|-.=+.+-..- +..+--|-
T Consensus 311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr-----------~~~~ed~l 379 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQR-----------LKKNEDQL 379 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHH
Confidence 0123334444443333333333333334455555555555555542222221111111100 00111112
Q ss_pred HHHHHHHHHhHHHHhhh---hhhhhccHHHHHHHHHHHH------HHHHHHHHHHhhhhhhhh
Q 002247 610 AHLEEMLQKANDELSLI---KDQNGVKLQELSDQLEQKD------KQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 610 ~~LEe~Lqk~neeL~~~---~~~~e~kl~eL~~q~d~K~------k~ie~m~~el~~kSkqle 663 (947)
..|=--|++-+.+|..+ +...++.|++|..-+..+. ++++....+|..+..+|-
T Consensus 380 k~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~ 442 (786)
T PF05483_consen 380 KILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELT 442 (786)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333334333322 2334566777877777777 666666666666655554
No 43
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.16 E-value=9.4e-05 Score=89.30 Aligned_cols=118 Identities=22% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHH
Q 002247 423 RDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQ 502 (947)
Q Consensus 423 ~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ 502 (947)
..+..+-+.|.....+|..+|..|..+.+.|..||-.+..++.+.+-- .....+..-.....+.++++.|.+++...
T Consensus 182 ~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~---~~~~~~~~~~~~~~l~~ql~~L~~el~~~ 258 (713)
T PF05622_consen 182 SRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGS---SEEPSQHLSVELADLRAQLRRLREELERL 258 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCC---CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555666777777777777778888887777776664410 11112222244667889999998888765
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHh
Q 002247 503 SEEYSESLISINELECQVKELKREL------DKQAQEFEDDIDAVTH 543 (947)
Q Consensus 503 ~~efSe~l~tI~~Le~q~~sLekEL------e~Qaq~fe~dl~a~~~ 543 (947)
..-..+.-..+..++..+..|.++. ...++.+-.++|.+-+
T Consensus 259 e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~ 305 (713)
T PF05622_consen 259 EEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELRE 305 (713)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5555556666667777776666553 2455666666666643
No 44
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.16 E-value=1.3 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=18.6
Q ss_pred HhhHHHHHHHHHHHHHHHHhhHhH
Q 002247 762 IGNLQAEVENLKVQQNKLQNSLIE 785 (947)
Q Consensus 762 i~~L~~E~e~Lk~q~~~Lk~sls~ 785 (947)
+..+..+++.++.+...+...+..
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~~~~ 713 (908)
T COG0419 690 LEQLEEELEQLREELEELLKKLGE 713 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888887777777776
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.08 E-value=1.1 Score=53.58 Aligned_cols=333 Identities=19% Similarity=0.225 Sum_probs=191.6
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHH
Q 002247 419 KQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDK 498 (947)
Q Consensus 419 ~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~e 498 (947)
|+-|.+|.+=++.|-.-.-+|+.+=--|+.|+..|..= .. . .++....+ .++.+-..-.-
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~------------~~-----~-~ts~ik~~--ye~El~~ar~~ 100 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV------------VG-----R-ETSGIKAK--YEAELATARKL 100 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------cc-----C-CCcchhHH--hhhhHHHHHHH
Confidence 34577787778888888888888888888888887550 00 0 11111111 12333334444
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHH--HHHHHHHHhhhhhhhHHHHHHH
Q 002247 499 IKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIR--AEEELRKTRWKNTVTAERLQDE 576 (947)
Q Consensus 499 LkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~--aeeaLrk~r~~na~~~e~LQ~e 576 (947)
+.+...+-+.....|..|+.+++.|.+-+++.......+-..+. .+.-++.. ||-++-|.|.
T Consensus 101 l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~----~~~~~l~~leAe~~~~krr~------------ 164 (546)
T KOG0977|consen 101 LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLD----DYLSRLSELEAEINTLKRRI------------ 164 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH----HHhhhhhhhhhHHHHHHHHH------------
Confidence 55555555555666666666666666655555443333222211 12222222 2222222221
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHh---hhhhhhhccHHHHHHHHHHHHHHHHHHHH
Q 002247 577 FRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELS---LIKDQNGVKLQELSDQLEQKDKQIQKMYL 653 (947)
Q Consensus 577 ~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~---~~~~~~e~kl~eL~~q~d~K~k~ie~m~~ 653 (947)
..---|...|+.++..|..-|+.+..+|. +.+.++.-++++|...|+|+..+=++-+.
T Consensus 165 -------------------~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~ 225 (546)
T KOG0977|consen 165 -------------------KALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIE 225 (546)
T ss_pred -------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 11223566778888888888888876664 34578899999999999999977655555
Q ss_pred HHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHH
Q 002247 654 ELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKK 733 (947)
Q Consensus 654 el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ 733 (947)
|+-.+ .+-.--....+.+..-|..=|+-++|+-+.... ++ +.|+|.. ...+|+.-..--.--...
T Consensus 226 e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~-------~n-R~diE~~------Y~~kI~~i~~~~~~~~~~ 290 (546)
T KOG0977|consen 226 EERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISR-------QN-RKDIESW------YKRKIQEIRTSAERANVE 290 (546)
T ss_pred HHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHH-------Hh-HHHHHHH------HHHHHHHHHhhhccccch
Confidence 55111 111100122333444444455555555554443 22 1221111 111222211101111123
Q ss_pred HHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh----HHHHhhHHHHHHHHHHHHHHHhhHH
Q 002247 734 FASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI----EEKLEKDNLAKQVFQLKDELQKKKE 809 (947)
Q Consensus 734 ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls----~~~~EkE~l~kqv~qLk~eL~kkE~ 809 (947)
...++.|+......+..++.-=.+.|..-..|-..++.|+.|.++-+.+.- .-+.+...|+.+..+|-.+|.+-=|
T Consensus 291 ~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 291 QNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred hHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355667777777777777777788888888888889999988888776655 5566666999999999999999888
Q ss_pred HHhhhhhhcccc
Q 002247 810 EINRTGKGLKKY 821 (947)
Q Consensus 810 ~~~~~ek~lk~~ 821 (947)
....+.++|..+
T Consensus 371 ~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 371 TKISLDAEIAAY 382 (546)
T ss_pred hHhHHHhHHHHH
Confidence 777776666544
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=1.6 Score=55.14 Aligned_cols=209 Identities=20% Similarity=0.247 Sum_probs=111.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhH
Q 002247 598 AMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALS 677 (947)
Q Consensus 598 A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s 677 (947)
++-.-...+.+-+....-|..++.+|.++..+.. |-.+|..|+++|+..+-....-+ .|.+..+-. +-...+.
T Consensus 675 ~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~-kf~~l~~ql~l~~~~l~l~~~r~----~~~e~~~~~--~~~~~~~ 747 (1174)
T KOG0933|consen 675 QLQKLKQAQKELRAIQKELEALERELKSLEAQSQ-KFRDLKQQLELKLHELALLEKRL----EQNEFHKLL--DDLKELL 747 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----hcChHhhHH--HHHHHHH
Confidence 4444555666666777778888999999888665 88999999999998885443333 111111111 1123344
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhh----hHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 678 TEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWN----RERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 678 ~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~----~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
.+|.-+..+|..... ..+..+ ++ +.-.|...+++. .+..+|..+|..++..++....++..-..
T Consensus 748 e~v~e~~~~Ike~~~-------~~k~~~-~~----i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~ 815 (1174)
T KOG0933|consen 748 EEVEESEQQIKEKER-------ALKKCE-DK----ISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKREN 815 (1174)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHH-HH----HHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433222 111111 00 111222222222 22345556665555555555554443222
Q ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCCCC
Q 002247 754 LKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPV 825 (947)
Q Consensus 754 ~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~gr~ 825 (947)
.-.-....+..|+.++..++.|.-.+...++.=.++..+|...|...+++..+..+++.-..++++.-+.++
T Consensus 816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222223333333333344444444444444556667888888888888888888888877777766555
No 47
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.07 E-value=1.3 Score=53.98 Aligned_cols=153 Identities=20% Similarity=0.288 Sum_probs=91.1
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQS 492 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~ 492 (947)
.+...+++||..+..++...+++++..-.++.+|+.....|+. +.+...-...+..+-..-..|...+
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~------------q~~~~~~~~~pa~pse~E~~Lq~E~ 89 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN------------QMAEPPPPEPPAGPSEVEQQLQAEA 89 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hhcccCCccccccchHHHHHHHHHH
Confidence 4667899999999999999999999999999999998766643 3333111111111111111233333
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 002247 493 ERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAER 572 (947)
Q Consensus 493 e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~ 572 (947)
+.|. ..+..|...+. .-..+-..+...+.++++|....|..|+...-
T Consensus 90 ~~L~---------------------kElE~L~~qlq----aqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e-------- 136 (617)
T PF15070_consen 90 EHLR---------------------KELESLEEQLQ----AQVENNEQLSRLNQEQEERLAELEEELERLQE-------- 136 (617)
T ss_pred HHHH---------------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 3332 22233333333 23335557777888999999988888876432
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 002247 573 LQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEE 614 (947)
Q Consensus 573 LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe 614 (947)
-..|..+|..+|.|-.. .+..|++---+|..|-.-|+.
T Consensus 137 ~~~D~~kLLe~lqsdk~----t~SRAlsQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 137 QQEDRQKLLEQLQSDKA----TASRALSQNRELKEQLAELQD 174 (617)
T ss_pred HHHHHHHHHhhhcccch----HHHHHHHhHHHHHHHHHHHHH
Confidence 22456677777755433 244566555556555555555
No 48
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=1.3 Score=54.58 Aligned_cols=133 Identities=18% Similarity=0.250 Sum_probs=63.2
Q ss_pred HHhhHHHHHHHHHHhHHHHhhhhh---hhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHH
Q 002247 605 QRMQKAHLEEMLQKANDELSLIKD---QNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIH 681 (947)
Q Consensus 605 LR~qk~~LEe~Lqk~neeL~~~~~---~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~ 681 (947)
|-+.|++|+-.|...|..+..+-. +-++++..-.+.|+-.+++++.|..|++.+-. +|+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqa------------------rik 496 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQA------------------RIK 496 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHH------------------HHH
Confidence 344444444444444444443221 24556666677888888888888888843333 333
Q ss_pred HHHHHHHHHHHhhhhhhhhccccCCCCCccc--cchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhccc
Q 002247 682 MLRTEIEKLRKEQYNLSEHGKRRDDNKPKVS--TGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLK 755 (947)
Q Consensus 682 ~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s--~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~k 755 (947)
-+...+-+|.-|...|-.+.+...--..-.+ ..++++.......=|+.|...+--+.+|.+..+++++......
T Consensus 497 E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~ql 572 (1118)
T KOG1029|consen 497 ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQL 572 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3444444444444444333322111111111 2234444444444455555555555555555555544443333
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=1.1 Score=56.52 Aligned_cols=278 Identities=20% Similarity=0.295 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhh-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHH-
Q 002247 519 QVKELKRELDKQAQEFEDDIDAVTHAK-TEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAM- 596 (947)
Q Consensus 519 q~~sLekELe~Qaq~fe~dl~a~~~~~-~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~- 596 (947)
+|..|-+.++.+...+|.+...+..-+ -+-++|+ |--|. |.-+..-.-.++.+|..+..++.++++++.-
T Consensus 188 kI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~------lEYti--YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~ 259 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEEEKEELEKYQKLDKERRS------LEYTI--YDRELNEINGELERLEEDRSSAPEESEQYIDA 259 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhh------hhhhh--hhhHHHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 556777778888888888877775433 3333333 22222 2234445556788899999999998888653
Q ss_pred --HHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh----------ccHHHHHHHHHHH-------HHHHHHHHHHHhh
Q 002247 597 --KAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG----------VKLQELSDQLEQK-------DKQIQKMYLELDH 657 (947)
Q Consensus 597 --~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e----------~kl~eL~~q~d~K-------~k~ie~m~~el~~ 657 (947)
++..+...+-.+.+.||..|..-+++.+.++.++- +++.+|+.++..- ...++..-.++..
T Consensus 260 ~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e 339 (1200)
T KOG0964|consen 260 LDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEE 339 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 46777788889999999999999998888877643 2333333333221 1111112222222
Q ss_pred hhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhh-hhccccCC-------CCCccccchhhhhHhhhhhHHHH
Q 002247 658 SSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLS-EHGKRRDD-------NKPKVSTGETDMLIQKWNRERDD 729 (947)
Q Consensus 658 kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~-e~~~~~e~-------e~~k~s~~e~e~~l~~~~~er~~ 729 (947)
+-++|. -=.-.+.++..|=.+++.+|-.|......|. .|.....+ .=++..+..+.-.+......++.
T Consensus 340 ~~~EL~----~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~ 415 (1200)
T KOG0964|consen 340 KKDELS----KIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENI 415 (1200)
T ss_pred HHHHHH----HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 222222 1123456677777888888888887666543 33311110 00111122222333333333333
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHh-------hHHHHHHHHHHHH
Q 002247 730 LEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLE-------KDNLAKQVFQLKD 802 (947)
Q Consensus 730 L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~E-------kE~l~kqv~qLk~ 802 (947)
|..+|..++.+..+..+++. +.+..|+.....++.+-+.+..+|..+.+.... --+|+.-+-.++.
T Consensus 416 lq~e~~~~e~~l~~~~e~i~-------~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~ 488 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIK-------ELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEE 488 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333 333344444444444444455555555432221 1267777778888
Q ss_pred HHHhhHHHHhhhh
Q 002247 803 ELQKKKEEINRTG 815 (947)
Q Consensus 803 eL~kkE~~~~~~e 815 (947)
+|.+.+..+..+.
T Consensus 489 dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 489 DLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHhc
Confidence 8888777666543
No 50
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.91 E-value=0.076 Score=59.59 Aligned_cols=181 Identities=21% Similarity=0.266 Sum_probs=130.9
Q ss_pred HHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh---------------------hhhhhhhHHHHHhhhhhhhhchhhh
Q 002247 424 DQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQEN---------------------QCLTSKLEKIQQQESMKSRECIESL 482 (947)
Q Consensus 424 dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN---------------------~dls~KLeq~q~Q~~k~q~EcSs~~ 482 (947)
=|..|++-|+.++|..+.-++||...|..|+.-+ ..++--|.++.-++.+++.|-....
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999998888877633 4455567788888877888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLIS--INELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELR 560 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~t--I~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLr 560 (947)
.-+.++++.|.-|-..+..+.-.+...-.+ ..+=+.=|..| +.+..|...++-|+.++..++.|-..
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL-Ek~~~q~~qLe~d~qs~lDEkeEl~~---------- 161 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL-EKLREQIEQLERDLQSLLDEKEELVT---------- 161 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 888888888888888887776665443322 24444445555 56788888899999999888876432
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhh
Q 002247 561 KTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIK 627 (947)
Q Consensus 561 k~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~ 627 (947)
-|=-|.--|.||..|+- -.....++ -|..++.|-+.|+-|=|-|..+.+|..+++
T Consensus 162 -ERD~yk~K~~RLN~ELn-------~~L~g~~~----rivDIDaLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 162 -ERDAYKCKAHRLNHELN-------YILNGDEN----RIVDIDALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred -HHHHHHHHHHHHHHHHH-------HHhCCCCC----CcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223444666666652 22233333 566899999999999999999999998843
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.85 E-value=0.11 Score=60.78 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=28.2
Q ss_pred HhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhcc
Q 002247 762 IGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLK 819 (947)
Q Consensus 762 i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk 819 (947)
+..++..+..++.....++..+..-..+...++..|..|+..-...+.++..++.+|+
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 3334455555555555555555554444455555555555554444444444444433
No 52
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.82 E-value=2.4 Score=53.12 Aligned_cols=272 Identities=25% Similarity=0.305 Sum_probs=167.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKR--ELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELR 560 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLek--ELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLr 560 (947)
.|-.+|.+|+..|.++|.-.+..-+++..-+.+|+..--.+++ |+.++.++--+||. ++.-+|
T Consensus 224 kte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lq----------rel~ra----- 288 (1243)
T KOG0971|consen 224 KTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQ----------RELKRA----- 288 (1243)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-----
Confidence 4445689999999999999999999999999888876666553 55555555544443 332222
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHH-HHHHHhHHHHhh----hhhhhhccHH
Q 002247 561 KTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLE-EMLQKANDELSL----IKDQNGVKLQ 635 (947)
Q Consensus 561 k~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LE-e~Lqk~neeL~~----~~~~~e~kl~ 635 (947)
| .++..+|+=-.+.-..|+-+.|.=|-+|.+ .|-.|=|++-=++| ++++.-++||.. .+..-+-|=-
T Consensus 289 --R----~e~keaqe~ke~~k~emad~ad~iEmaTld--KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~ 360 (1243)
T KOG0971|consen 289 --R----KEAKEAQEAKERYKEEMADTADAIEMATLD--KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGS 360 (1243)
T ss_pred --H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 223444444455666788888888887765 45555566555544 344444444332 2222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccch
Q 002247 636 ELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGE 715 (947)
Q Consensus 636 eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e 715 (947)
+-.....--.|+||+--.-|.+.-=-|-+.--++..-+--+..|.++++.|++.|.--...|
T Consensus 361 ~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~L------------------ 422 (1243)
T KOG0971|consen 361 DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERL------------------ 422 (1243)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------------
Confidence 11122222345565555555555544555445555555566677777777776666522222
Q ss_pred hhhhHhhhhhHHHHHHHHHHhHHHHHHHHH--HHHHh-hhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhH-
Q 002247 716 TDMLIQKWNRERDDLEKKFASAKQEAAKAH--EELIS-MRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKD- 791 (947)
Q Consensus 716 ~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~--~eL~~-~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE- 791 (947)
..+.++++.+|+-+|.+|-.++ +++-+ +...|=+.|..+..|-.+|+.|.+- .++-.-|-+...|.|
T Consensus 423 --------sr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal-ee~~EQL~Esn~ele~ 493 (1243)
T KOG0971|consen 423 --------SRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL-EEMNEQLQESNRELEL 493 (1243)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4566888899999998887764 34433 5666778899999999888887653 445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 002247 792 NLAKQVFQLKDEL 804 (947)
Q Consensus 792 ~l~kqv~qLk~eL 804 (947)
.|+++|-+++|..
T Consensus 494 DLreEld~~~g~~ 506 (1243)
T KOG0971|consen 494 DLREELDMAKGAR 506 (1243)
T ss_pred HHHHHHHHHhhHH
Confidence 6888888888765
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.79 E-value=0.65 Score=54.33 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhh
Q 002247 674 EALSTEIHMLRTEIEKLRKEQYNL 697 (947)
Q Consensus 674 ~~~s~ei~~Lkaeie~L~~e~~~L 697 (947)
..+..+|..++.++..+.+....+
T Consensus 258 ~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 258 NKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555544433
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.59 E-value=2.6 Score=50.57 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKT 562 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~ 562 (947)
..|...+.++..+..+|.+...-.......|..|...+..|.+.+-.+.-
T Consensus 112 ~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~------------------------------ 161 (569)
T PRK04778 112 SLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRF------------------------------ 161 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------------------------------
Confidence 34444455555555544444444444444444444444444444444433
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH-----HHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHH
Q 002247 563 RWKNTVTAERLQDEFRRLSVDMASKFDENEKLA-----MKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQEL 637 (947)
Q Consensus 563 r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~-----~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL 637 (947)
.+..++.-|.+.+..|-. .|+.=+.+| .+|-.-...++.+-..|+.++..+=.=+.-++..+-.+|++|
T Consensus 162 --~~G~a~~~le~~l~~~e~----~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el 235 (569)
T PRK04778 162 --SFGPALDELEKQLENLEE----EFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235 (569)
T ss_pred --cccchHHHHHHHHHHHHH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444444444444333 222223333 345555566666666666666555444444444443444444
No 55
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=96.56 E-value=0.85 Score=52.48 Aligned_cols=127 Identities=24% Similarity=0.207 Sum_probs=84.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHH
Q 002247 557 EELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQE 636 (947)
Q Consensus 557 eaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~e 636 (947)
++||+-++ -.++-+|+|+.-||.|-+.+|=+|=-++..+=+|---|| .|+.|
T Consensus 413 eaLRrQyl---eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLR-----------qCQrE-------------- 464 (593)
T KOG4807|consen 413 EALRRQYL---EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALR-----------QCQRE-------------- 464 (593)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHh--------------
Confidence 45666554 467889999999999999999999777665544433333 22111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchh
Q 002247 637 LSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGET 716 (947)
Q Consensus 637 L~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~ 716 (947)
-+| +-+|..+.++.|+.||..|+.=|.-=--=..+= +.+. ++.-++
T Consensus 465 ---------------nQE----------LnaHNQELnnRLaaEItrLRtlltgdGgGtGsp----laqg-----kdayEL 510 (593)
T KOG4807|consen 465 ---------------NQE----------LNAHNQELNNRLAAEITRLRTLLTGDGGGTGSP----LAQG-----KDAYEL 510 (593)
T ss_pred ---------------hHH----------HHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCc----cccC-----cchhhH
Confidence 112 235677778888999998887541100000000 3333 356789
Q ss_pred hhhHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 002247 717 DMLIQKWNRERDDLEKKFASAKQEAAKAH 745 (947)
Q Consensus 717 e~~l~~~~~er~~L~~~ia~lk~Ea~~~~ 745 (947)
|-+|-....|++=|..+|.+||||....+
T Consensus 511 EVLLRVKEsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 511 EVLLRVKESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877654
No 56
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.51 E-value=4.5 Score=52.25 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhc---cHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 592 EKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGV---KLQEL---SDQLEQKDKQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 592 Ek~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~---kl~eL---~~q~d~K~k~ie~m~~el~~kSkqle 663 (947)
|.....+...+++=|.-...++..+.+..+++..++.+|.. +++.| ..+......-|+.|+...-+++.-++
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~ 776 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQ 776 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 55556666777777777788888899999999988888764 23333 33444455556666554444444443
No 57
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=4.2 Score=51.68 Aligned_cols=220 Identities=22% Similarity=0.295 Sum_probs=144.7
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH-HhhhhhhhhchhhhHhHHHHHHHHHHHHHH
Q 002247 420 QKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQ-QQESMKSRECIESLATIKELESQSERLEDK 498 (947)
Q Consensus 420 qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q-~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~e 498 (947)
+++.+...+|....++.+.|+.+++-|+---.-+.+=+.++-.++..-- ++.=.-|+|+.-.+..+.++...++.++++
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~ 756 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQ 756 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHH
Confidence 3666666788888899999999988877554444444444433333221 222225678888889999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHH
Q 002247 499 IKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN---TVTAERLQD 575 (947)
Q Consensus 499 LkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~n---a~~~e~LQ~ 575 (947)
+++...-+-+|-..|+-||..+..-..+-+++...++..|....+...+...+ +.|.+-.+ -.++|.|++
T Consensus 757 Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~-------~ek~~~e~e~l~lE~e~l~~ 829 (1174)
T KOG0933|consen 757 IKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKE-------LEKRENEYERLQLEHEELEK 829 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888777777777777666554433333332 22222211 234555666
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 002247 576 EFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLE 654 (947)
Q Consensus 576 e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~e 654 (947)
|...+-.++.+. ++-+..=..|...|++-....+....++.++|...++ ++-+..++++.=..-.+.+..+
T Consensus 830 e~~~~k~~l~~~----~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~----k~~~~dt~i~~~~~~~e~~~~e 900 (1174)
T KOG0933|consen 830 EISSLKQQLEQL----EKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKA----KQRDIDTEISGLLTSQEKCLSE 900 (1174)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH----HHHhhhHHHhhhhhHHHHHHHH
Confidence 665555555444 3444445567888888888888888888777776444 5556666665444444444443
No 58
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.43 E-value=3.4 Score=52.79 Aligned_cols=132 Identities=21% Similarity=0.317 Sum_probs=65.0
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCC
Q 002247 630 NGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKP 709 (947)
Q Consensus 630 ~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~ 709 (947)
-+.+++++....+.+...|+-+..-++++-..... -+..++.--..|+.+|.+..-|.+.+.++
T Consensus 321 iea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~----~~~~~~~~~n~i~~~k~~~d~l~k~I~~~------------ 384 (1074)
T KOG0250|consen 321 IEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND----LKEEIREIENSIRKLKKEVDRLEKQIADL------------ 384 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45566777777777777776666666555543321 11112222233333333333333322222
Q ss_pred ccccchhhhhH-hhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh
Q 002247 710 KVSTGETDMLI-QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI 784 (947)
Q Consensus 710 k~s~~e~e~~l-~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls 784 (947)
+..+ +....++.+.+.++..|+.|++++...++.++..-++.-..+..-+.+....+.-...|.++++
T Consensus 385 -------~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~ 453 (1074)
T KOG0250|consen 385 -------EKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIE 453 (1074)
T ss_pred -------HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2222 5556677777777777777777776655544433333333333333333333333444444443
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.39 E-value=1.7 Score=45.99 Aligned_cols=107 Identities=22% Similarity=0.366 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 002247 441 IYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQV 520 (947)
Q Consensus 441 ~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~ 520 (947)
....++-.||...|..|+++|-.|++ +.-. +....+..+..|.+-..+.......+..++..+
T Consensus 9 ~af~~iK~YYndIT~~NL~lIksLKe-ei~e----------------mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~ 71 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKSLKE-EIAE----------------MKKKEERNEKLMAEISQENKRLSEPLKKAEEEV 71 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45677888999999999999988887 3333 333333334444444444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 002247 521 KELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAER 572 (947)
Q Consensus 521 ~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~ 572 (947)
..|.+ +...|+.|..++...+. |....+.-|+..+|.+.+--.+
T Consensus 72 ~eL~k----~L~~y~kdK~~L~~~k~----rl~~~ek~l~~Lk~e~evL~qr 115 (201)
T PF13851_consen 72 EELRK----QLKNYEKDKQSLQNLKA----RLKELEKELKDLKWEHEVLEQR 115 (201)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 44568888888877664 5556677889999988765443
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.35 E-value=2.4 Score=52.41 Aligned_cols=177 Identities=24% Similarity=0.319 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH-----------HHHHHH
Q 002247 493 ERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRA-----------EEELRK 561 (947)
Q Consensus 493 e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~a-----------eeaLrk 561 (947)
+.|+.++.+....=-.+..++..||.++. +..++-..+|+-|.+-.+++.+-|..|-+| -+++|.
T Consensus 470 e~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~----eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~ 545 (697)
T PF09726_consen 470 EQLQNKLQNLVQARQQDKQSLQQLEKRLA----EERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQ 545 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHH
Confidence 34444444444444445555555554432 334455567777777777777766666554 133443
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHH
Q 002247 562 TRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQL 641 (947)
Q Consensus 562 ~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~ 641 (947)
.| ..|+.|++.|-.++-++ |-..+.+-.|+.+||...+--+.-.+-.--.|+.++|-+.-==+-|+-+-
T Consensus 546 r~-------~~lE~E~~~lr~elk~k----ee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt 614 (697)
T PF09726_consen 546 RR-------RQLESELKKLRRELKQK----EEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET 614 (697)
T ss_pred HH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33 24555566655555443 22344445555666665211111111112224444442221111122222
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 002247 642 EQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 642 d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~ 692 (947)
..| ..+.--|-++-+|++- ....+..=-.||..||+.|..+..
T Consensus 615 riK----ldLfsaLg~akrq~ei----~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 615 RIK----LDLFSALGDAKRQLEI----AQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 2345566667777762 223334445799999999998876
No 61
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.31 E-value=4.6 Score=50.18 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=95.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Q 002247 485 IKEL-ESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQ---AQEFEDDIDAVTHAKTEQEQRAIRAEEELR 560 (947)
Q Consensus 485 I~eL-e~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Q---aq~fe~dl~a~~~~~~EqEqRai~aeeaLr 560 (947)
.++| =+.|+.|+++|-.-..+-+.-+.++.+++.|+..-..+|..| +-++.+.+++|.+.+...++-.. ..
T Consensus 259 fSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~-----~d 333 (717)
T PF09730_consen 259 FSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSA-----ED 333 (717)
T ss_pred hhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhh-----hh
Confidence 4444 467889999999889999999999999999999999888755 88889999999986665555432 22
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHH
Q 002247 561 KTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQ 640 (947)
Q Consensus 561 k~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q 640 (947)
...+.++..- .........+ ++--|.-...|++|+..|+..-..|..-+..+..--..-++.++..++.|..+
T Consensus 334 ~~~~~~s~~d------~~~ye~Di~~-~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ek 406 (717)
T PF09730_consen 334 SEKERDSHED------GDYYEVDING-LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEK 406 (717)
T ss_pred cccccccccc------cchhhhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 1111111111 12234556678888888888888777777666654444455555556665555
Q ss_pred HHH
Q 002247 641 LEQ 643 (947)
Q Consensus 641 ~d~ 643 (947)
+..
T Consensus 407 l~~ 409 (717)
T PF09730_consen 407 LMS 409 (717)
T ss_pred HHH
Confidence 443
No 62
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.25 E-value=5.4 Score=50.40 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=32.3
Q ss_pred chhHHHHHHHHH-HHHHhhh---hhHHHHHHHHHHHHHHhhhH--hHHHHHHHhhHHHhhHHHHHHHHHhh
Q 002247 246 DGSVEKLKNEIA-VMMRQVE---LSELELLSLRKQVAKESKRA--QDQTRQIISLSSERDALTIECEQLRK 310 (947)
Q Consensus 246 e~~iE~LK~E~~-~L~R~ad---~s~lELQtLRKQi~kEsKrg--qdLs~Evs~Lk~ERD~LK~E~EqLKs 310 (947)
...++.|+..+. .++...+ ....++..+.+ +..--... ..|..++..+......|....+.+..
T Consensus 184 ~~~~e~l~~~~~~~~e~~~~~~~~~~~e~~~~~~-l~e~~~~~~~~~l~~e~e~l~~~~~el~~~~~~~~~ 253 (908)
T COG0419 184 KAKIEELEGQLSELLEDIEDLLEALEEELKELKK-LEEIQEEQEEEELEQEIEALEERLAELEEEKERLEE 253 (908)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666 4443333 23444444443 11111111 23666777776666666666665554
No 63
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=4.7 Score=49.53 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHH------HHHHHHHHHHHHHhh
Q 002247 494 RLEDKIKQQSEEYS---ESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQE------QRAIRAEEELRKTRW 564 (947)
Q Consensus 494 ~LE~eLkeQ~~efS---e~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqE------qRai~aeeaLrk~r~ 564 (947)
.++..+..++.+-+ +...+|..|+..++.|+-.+- ++..+..++-.+.=+|...- +||+.. +-..+-
T Consensus 255 ~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~-~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~---~~~~~~ 330 (716)
T KOG4593|consen 255 ELERALSQLREELATLRENRETVGLLQEELEGLQSKLG-RLEKLQSTLLGLELENEDLLTKLQRWERADQE---MGSLRT 330 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh---hhccCC
Confidence 34455555555555 777788888888887776653 34445555554444443322 233222 111110
Q ss_pred hh---------hhhHHHHHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhh
Q 002247 565 KN---------TVTAERLQDEFRRLSVDMA------SKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQ 629 (947)
Q Consensus 565 ~n---------a~~~e~LQ~e~~~LS~qm~------s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~ 629 (947)
.+ -+..-+|-....-++..+. --.-++.+-++.--.++..+|.-+-.|...+|++.=.+..+.|-
T Consensus 331 ~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl 410 (716)
T KOG4593|consen 331 PEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDL 410 (716)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011111111112222222 12345555666666677788888888888888876555555443
Q ss_pred hh---------ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 630 NG---------VKLQELSDQLEQKDKQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 630 ~e---------~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle 663 (947)
.+ -.++.-++++..+.-+++.||...+..+-..+
T Consensus 411 ~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e 453 (716)
T KOG4593|consen 411 NRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEME 453 (716)
T ss_pred HHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 22 23344455555566666666666655555554
No 64
>PRK11637 AmiB activator; Provisional
Probab=96.21 E-value=0.87 Score=52.46 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhh
Q 002247 673 HEALSTEIHMLRTEIEKLRKEQYN 696 (947)
Q Consensus 673 ~~~~s~ei~~Lkaeie~L~~e~~~ 696 (947)
...+..+|..+.++|+.+......
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666554444
No 65
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=6.7 Score=50.25 Aligned_cols=279 Identities=23% Similarity=0.319 Sum_probs=145.5
Q ss_pred CchhhHHHHHHHHHHhhH---HHHHHHhHHH-------HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhh-----hhhh
Q 002247 411 KDKEVDMLKQKIRDQGDE---IQFFKKHAED-------LEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQE-----SMKS 475 (947)
Q Consensus 411 ~~~E~~~L~qKI~dL~~E---ie~ykke~E~-------Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~-----~k~q 475 (947)
|++++..|+++=.+|.-+ |..-+++... |++.+.=+..|++.++. +.-..+.++|. .+++
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~-----~l~~~~~El~~~~~~i~~~~ 724 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKR-----SLEQNELELQRTESEIDEFG 724 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhC
Confidence 456777777766666544 4332334344 44444444555555542 22223333333 2334
Q ss_pred hhchhhhHhHHHHHHHHHHHHHHHHHHHHH-HhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHH
Q 002247 476 RECIESLATIKELESQSERLEDKIKQQSEE-YSESLISI----NELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQ 550 (947)
Q Consensus 476 ~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~e-fSe~l~tI----~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEq 550 (947)
-+-|.+.--|...++.+..|+.++++-..+ |.+++..| -+-+.. .+.+++.++-+.|+..+..+.-. .+.|+
T Consensus 725 p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~--~~~~~~a~k~~ef~~q~~~l~~~-l~fe~ 801 (1141)
T KOG0018|consen 725 PEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEER--ELQQEFAKKRLEFENQKAKLENQ-LDFEK 801 (1141)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHH--HHHHHHHHHHHHHHHHHHHHhhh-hhhee
Confidence 444444455555566666666666654433 55555443 222221 22666666666666666554321 11221
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhh
Q 002247 551 RAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQN 630 (947)
Q Consensus 551 Rai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~ 630 (947)
- -..-. .||++++.+..+-.++-+. ..+|..+++.+.|..++-. +.
T Consensus 802 ~---~d~~~---------~ve~~~~~v~~~~~~~~~~-~~~e~~~~k~i~e~~~~e~-k~-------------------- 847 (1141)
T KOG0018|consen 802 Q---KDTQR---------RVERWERSVEDLEKEIEGL-KKDEEAAEKIIAEIEELEK-KN-------------------- 847 (1141)
T ss_pred c---ccHHH---------HHHHHHHHHHHHHHhHHhh-HHHHHHHHHHHhhHHHHHH-HH--------------------
Confidence 1 00111 2344444444444444443 3378888888888844332 11
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCc
Q 002247 631 GVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPK 710 (947)
Q Consensus 631 e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k 710 (947)
..+.+....++.-.-+...+|+-++ -.+..+|..+...||++..|+++|+..++=.+.+.+=
T Consensus 848 k~~~~~~~~e~~e~~k~~~~~~~~~------------------tkl~~~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl 909 (1141)
T KOG0018|consen 848 KSKFEKKEDEINEVKKILRRLVKEL------------------TKLDKEITSIESKIERKESERHNLLSKCKLEDIEVPL 909 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhhhhhhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 3355555666666667777776666 2356778899999999999999999888555544442
Q ss_pred cccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 002247 711 VSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISM 751 (947)
Q Consensus 711 ~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~ 751 (947)
.+-.=.+.-. --.---..|-+++. |+.+..-..+.|++|
T Consensus 910 ~~gs~~d~~~-~ieidy~~L~~~y~-L~~kl~e~~~~l~~~ 948 (1141)
T KOG0018|consen 910 SSGSMDDIVI-GIEIDYSGLPREYK-LQQKLEEKQSVLNRI 948 (1141)
T ss_pred cCCCccccce-ecccccccccHHHH-HHHHHHHHHHHHHHh
Confidence 2110000000 00001123334444 666666667777765
No 66
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.07 E-value=6 Score=49.32 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=18.6
Q ss_pred hHHHHHHhhhhhHHHHHHHhhHHHHHH
Q 002247 350 LRLQLEKTQDSNAELILAVKDLNEMLE 376 (947)
Q Consensus 350 L~lQLqKTQESN~ELvlavqDLEemLE 376 (947)
+.-|+.-.|.+..+|-.-.|-|-+++-
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~ 130 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQ 130 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777778888777777666666654
No 67
>PRK09039 hypothetical protein; Validated
Probab=96.02 E-value=0.46 Score=53.76 Aligned_cols=148 Identities=18% Similarity=0.261 Sum_probs=104.6
Q ss_pred chhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHH
Q 002247 412 DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQ 491 (947)
Q Consensus 412 ~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q 491 (947)
+.++..|+.+|.+|..-+...+.....|...+.+|..+|+.+..+.- +++. ++. .......+++++
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~---------~Le~---~~~--~~~~~~~~~~~~ 117 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERS---------RLQA---LLA--ELAGAGAAAEGR 117 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---------HHHH---HHh--hhhhhcchHHHH
Confidence 45777777777777666666677788888888888888887765332 2222 111 112334577889
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 002247 492 SERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE 571 (947)
Q Consensus 492 ~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e 571 (947)
...+..+|.++...+++....|.-|..||..|... ..++++.|++......++..+...-+..|+.+--...-..+
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q----la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQ----LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765 66889999998888877777775554444443322233335
Q ss_pred HHHHHH
Q 002247 572 RLQDEF 577 (947)
Q Consensus 572 ~LQ~e~ 577 (947)
++..+|
T Consensus 194 ~~~~~~ 199 (343)
T PRK09039 194 RYRSEF 199 (343)
T ss_pred HhHHHH
Confidence 666666
No 68
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.98 E-value=2.9 Score=44.85 Aligned_cols=148 Identities=20% Similarity=0.344 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q 002247 485 IKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRW 564 (947)
Q Consensus 485 I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~ 564 (947)
|...+.++..++.+|+....++...-..|..|...|..|+.+|++-..++.....- -.+-++++-..+.+++....
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~k----L~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEK----LEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHH----HHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 44556666677777777777777777777777777777777776544443332222 22334445555555555554
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHH
Q 002247 565 KNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQK 644 (947)
Q Consensus 565 ~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K 644 (947)
......+++. ++-..+.+-...+-.|-.-..+.--....+|.-|..|.+-+.. .+.++.+|-.++..-
T Consensus 86 r~~~~eeri~--------~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~----~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 86 REQSDEERIE--------ELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA----AESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHH--------HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHH
Confidence 4444444443 1111111222222222222223333334455555555554444 445555555555444
Q ss_pred HHHH
Q 002247 645 DKQI 648 (947)
Q Consensus 645 ~k~i 648 (947)
...|
T Consensus 154 ~~~l 157 (237)
T PF00261_consen 154 GNNL 157 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 69
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=1.6 Score=52.09 Aligned_cols=223 Identities=19% Similarity=0.223 Sum_probs=127.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhH
Q 002247 598 AMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALS 677 (947)
Q Consensus 598 A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s 677 (947)
|-.++..||+....|=+.|..+..+.-. -++|.. .=|....++| +++ +.+.
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~q-aAeyGL--~lLeeK~~Lk-qq~-------------------------eEle 56 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQ-AAEYGL--ELLEEKEDLK-QQL-------------------------EELE 56 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHH-HHH-------------------------HHHH
Confidence 5567778888887777666666554433 234542 1122222222 112 2233
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccch
Q 002247 678 TEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGE 757 (947)
Q Consensus 678 ~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kde 757 (947)
.|.+.++.+++.++.. +-++.+.+.--.+.....-|.+|+.+...-..+..+|.-|..|...+..+|.+++..++.
T Consensus 57 aeyd~~R~Eldqtkea----l~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~er 132 (772)
T KOG0999|consen 57 AEYDLARTELDQTKEA----LGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENER 132 (772)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666655542 222222222223344555678999999988999999999999999999999998887766
Q ss_pred hHHHHh--------------hHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCC
Q 002247 758 NEMLIG--------------NLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGG 823 (947)
Q Consensus 758 kE~~i~--------------~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~g 823 (947)
.+.... .|..|+.++|..-.-|-.-.|+=+.|.=.|||||+-|++-----|.. |+...
T Consensus 133 l~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEgl--------kheik 204 (772)
T KOG0999|consen 133 LEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGL--------KHEIK 204 (772)
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHH--------HHHHH
Confidence 655544 44455555555544444444444444458999999998854444432 22222
Q ss_pred CCchhhhchhHHHHhhhhh-------hhhhhhhhhchh----hhhhHHHhh
Q 002247 824 PVSDAQMTSMKERLRKGQK-------KLNKAELETSDN----RIAVDEYRH 863 (947)
Q Consensus 824 r~~~~tk~~~~nk~~~~~i-------~~~e~~~e~s~~----~~~~eke~~ 863 (947)
|.... +..-|..++.-| +.+|.||++.-+ +.+|.||+.
T Consensus 205 RleEe--~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~ 253 (772)
T KOG0999|consen 205 RLEEE--TELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELS 253 (772)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22111 111233333222 356788888774 566888884
No 70
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.96 E-value=7.5 Score=49.47 Aligned_cols=468 Identities=20% Similarity=0.279 Sum_probs=232.8
Q ss_pred HHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhH
Q 002247 272 SLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLR 351 (947)
Q Consensus 272 tLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e~~~~~l~eElr~El~yEKe~NaNL~ 351 (947)
.++.++-+-.-...++..++..|...-..|+.|-|+++... ++.... .-.+...++-+.+++-+.+..
T Consensus 255 ~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~----t~~~k~---kt~lel~~kdlq~~i~~n~q~----- 322 (1200)
T KOG0964|consen 255 QYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARE----TKISKK---KTKLELKIKDLQDQITGNEQQ----- 322 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---hhhhhhhhHHHHHHhhhhhhh-----
Confidence 34444555555566777777777777777777777776532 221111 001333445555555553331
Q ss_pred HHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcC-CchhhHHHHHHHHHHh----
Q 002247 352 LQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERN-KDKEVDMLKQKIRDQG---- 426 (947)
Q Consensus 352 lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~-~~~E~~~L~qKI~dL~---- 426 (947)
..+ .+-.++.++.-++++..|++.+--+.. .|+++.. --.-+..|+++-.+|+
T Consensus 323 -------r~~--~l~~l~~~~~ki~e~~~EL~~I~Pky~-------------~l~~ee~~~~~rl~~l~~~~~~l~~Kqg 380 (1200)
T KOG0964|consen 323 -------RNL--ALHVLQKVKDKIEEKKDELSKIEPKYN-------------SLVDEEKRLKKRLAKLEQKQRDLLAKQG 380 (1200)
T ss_pred -------hhh--HHHHHHHHHHHHHHHHHHHHHhhhHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 234566777777877777776432222 1222211 1123444555555543
Q ss_pred ----------------hHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHH
Q 002247 427 ----------------DEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELES 490 (947)
Q Consensus 427 ----------------~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~ 490 (947)
+||..|+.-..+...+...|..||+.+.- ++.-+|++ .+. .-.+|++.++
T Consensus 381 r~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~---~l~~~~e~--i~~---------l~~si~e~~~ 446 (1200)
T KOG0964|consen 381 RYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLES---ELKEKLEE--IKE---------LESSINETKG 446 (1200)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHH--HHH---------HHhhHhhhhh
Confidence 35666666666667777777777776644 22334443 222 1246777788
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhH
Q 002247 491 QSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTA 570 (947)
Q Consensus 491 q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~ 570 (947)
+|..+..+.-....+..+...+=+.| -+...++-.-++.+...-..++ ++.+| +..+.=.|--..|
T Consensus 447 r~~~~~~~~~~~k~~~del~~~Rk~l-----------WREE~~l~~~i~~~~~dl~~~~-~~L~~--~~~r~v~nGi~~v 512 (1200)
T KOG0964|consen 447 RMEEFDAENTELKRELDELQDKRKEL-----------WREEKKLRSLIANLEEDLSRAE-KNLRA--TMNRSVANGIDSV 512 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-HHHHH--hccchhhhhhHHH
Confidence 88777777666666666555444322 2222222222222222211111 11111 1222222333344
Q ss_pred HHHHHHHH------------------HHHHHhhh------hhhhhHHHHHHHHHHHHHHHh-------------------
Q 002247 571 ERLQDEFR------------------RLSVDMAS------KFDENEKLAMKAMTEANEQRM------------------- 607 (947)
Q Consensus 571 e~LQ~e~~------------------~LS~qm~s------~~~enEk~~~~A~~Ea~eLR~------------------- 607 (947)
-+.-++|+ .-.++|.. -+=+|+.++.+-+.+-..++.
T Consensus 513 ~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp 592 (1200)
T KOG0964|consen 513 RKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYP 592 (1200)
T ss_pred HHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCC
Confidence 44555554 01112111 112456666666666655554
Q ss_pred ---------hH---------------------HHHHHHHHHhHH-------------------------------HHhhh
Q 002247 608 ---------QK---------------------AHLEEMLQKAND-------------------------------ELSLI 626 (947)
Q Consensus 608 ---------qk---------------------~~LEe~Lqk~ne-------------------------------eL~~~ 626 (947)
++ +-|+--++-|.- ||--.
T Consensus 593 ~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~ 672 (1200)
T KOG0964|consen 593 KDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKN 672 (1200)
T ss_pred CCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhh
Confidence 00 112222222211 11112
Q ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhc--ccc
Q 002247 627 KDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG--KRR 704 (947)
Q Consensus 627 ~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~--~~~ 704 (947)
.+.|+.++-+|...++.= ..|+..++.+-.|+-+.-..-+-..++|..++.-|+.++-+++.+.+.+-+.- +..
T Consensus 673 ~~~~~~~~~~l~~~L~~~----r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~ 748 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEV----RNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGK 748 (1200)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Confidence 234555666666666653 33344444444555555555666777888888888888888888877765544 444
Q ss_pred CCCCCccccchhhhhHhhhhhHHH---------HHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHH-HHHH
Q 002247 705 DDNKPKVSTGETDMLIQKWNRERD---------DLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVE-NLKV 774 (947)
Q Consensus 705 e~e~~k~s~~e~e~~l~~~~~er~---------~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e-~Lk~ 774 (947)
.++.++++....+........+.- +-.+.+..|-+|+.++..+|..++...-+.+..+..|..++. .|..
T Consensus 749 ~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~ 828 (1200)
T KOG0964|consen 749 ELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYK 828 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445554444443333322222221 112333778888888888888776655555555555444432 2333
Q ss_pred HHHHH------------HhhHhHHHHhhHHHHHHHHHHHHHHH
Q 002247 775 QQNKL------------QNSLIEEKLEKDNLAKQVFQLKDELQ 805 (947)
Q Consensus 775 q~~~L------------k~sls~~~~EkE~l~kqv~qLk~eL~ 805 (947)
+.+.| .+.|-...++++...++|---..+|+
T Consensus 829 r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~ 871 (1200)
T KOG0964|consen 829 RVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELK 871 (1200)
T ss_pred hhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33333 33444555555555554444444444
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.92 E-value=6.9 Score=48.71 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=81.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHH-------HHH
Q 002247 670 AQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQ-------EAA 742 (947)
Q Consensus 670 ~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~-------Ea~ 742 (947)
+.++.+.-.|+..|++++..|+.+.+.+-+.+ .-....|..+.+.|..++..+.+ .+.
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~---------------~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~ 422 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEERY---------------KQEKDRLESEVQNLKEKLMSLEKSSREDQERIS 422 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 35667778888888888888887666653332 22335778888999999988888 788
Q ss_pred HHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh
Q 002247 743 KAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI 784 (947)
Q Consensus 743 ~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls 784 (947)
.+..+|..+...=++....|+..|.|+-++-.....|-|-+-
T Consensus 423 ~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC 464 (717)
T PF09730_consen 423 ELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVC 464 (717)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999988776
No 72
>PRK11637 AmiB activator; Provisional
Probab=95.71 E-value=5.5 Score=46.03 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=10.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHHH
Q 002247 629 QNGVKLQELSDQLEQKDKQIQKM 651 (947)
Q Consensus 629 ~~e~kl~eL~~q~d~K~k~ie~m 651 (947)
+.+.+..+|..+...+...+.++
T Consensus 202 e~~~~k~~L~~~k~e~~~~l~~L 224 (428)
T PRK11637 202 EQQAQQQKLEQARNERKKTLTGL 224 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 73
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.69 E-value=7.5 Score=47.40 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=45.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKT 562 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~ 562 (947)
..+.+++..+..+..+......+....-..+..++.++..+.+++....-.+....+.+.....+.+.+..+++..+++.
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555566666666666665555555555555555555555555555555555543
Q ss_pred h
Q 002247 563 R 563 (947)
Q Consensus 563 r 563 (947)
-
T Consensus 289 ~ 289 (650)
T TIGR03185 289 A 289 (650)
T ss_pred h
Confidence 3
No 74
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.57 E-value=10 Score=48.06 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhH
Q 002247 641 LEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLI 720 (947)
Q Consensus 641 ~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l 720 (947)
+.-|++.+|.-+.+|+..-.=-+.+.....+.--+|-+||+|++.-+-.|...++.-.|.+-- .+--+
T Consensus 460 lEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yD------------rdqTI 527 (1243)
T KOG0971|consen 460 LEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYD------------RDQTI 527 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh------------HHHHH
Confidence 344555555555555443332233333344445678889999988887777777766665521 22234
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHH
Q 002247 721 QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQL 800 (947)
Q Consensus 721 ~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qL 800 (947)
.++..--..|...+..++|+.+.+.+++..=-+.+ ..-.+-|+.+++..+=.+.+.-||-+.
T Consensus 528 ~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~~------------------~et~dyk~~fa~skayaraie~Qlrqi 589 (1243)
T KOG0971|consen 528 KKFRELVAHLQDQLQELTDQQESSEEESQQPPSVD------------------PETFDYKIKFAESKAYARAIEMQLRQI 589 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCCc------------------hhhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444555666667777777777766665443333 234567888888888888888888888
Q ss_pred HHHHHhhHH
Q 002247 801 KDELQKKKE 809 (947)
Q Consensus 801 k~eL~kkE~ 809 (947)
+-.+..+-.
T Consensus 590 Ev~~a~rh~ 598 (1243)
T KOG0971|consen 590 EVAQANRHM 598 (1243)
T ss_pred HHHHHHHHH
Confidence 877655443
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.56 E-value=6.1 Score=49.01 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHH
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQL 800 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qL 800 (947)
+...|+..++.++|....+.+.|..=..+|-++ =+-++..|.|...+...|..-+.|...|+.+|.+|
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldL-------fsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDL-------FSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777888888877777655555444 44455556666666666777777777777776654
No 76
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.55 E-value=12 Score=48.75 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH----
Q 002247 496 EDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE---- 571 (947)
Q Consensus 496 E~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e---- 571 (947)
|+.+++-...+++...+- ..+..+-.+++.+...+-.|+-.......++..+..+....+++. .-++..+
T Consensus 699 e~~~~e~~~~lseek~ar----~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~L--q~~LEqe~~~r 772 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAR----EKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKL--QSMLEQEISKR 772 (1317)
T ss_pred HHHHHHHHHHhcccccHH----HHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHH--HHHHHHHHHHh
Confidence 444444445555554444 344555566777777888888888766666666666665544432 2222222
Q ss_pred -HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002247 572 -RLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQ 617 (947)
Q Consensus 572 -~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lq 617 (947)
-+|+|++..+..+.+ .-+-.+.-.+-+.|++=|+++|+-..
T Consensus 773 ~~~~~eLssq~~~~~t-----~~~Ekq~~~~~~~l~~~K~~~e~~~~ 814 (1317)
T KOG0612|consen 773 LSLQRELKSQEQEVNT-----KMLEKQLKKLLDELAELKKQLEEENA 814 (1317)
T ss_pred hhhHHHhhhHHHhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 267788877777776 33334555566677777777775443
No 77
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.45 E-value=0.1 Score=52.26 Aligned_cols=130 Identities=22% Similarity=0.319 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCCCCchhhhchhHHHHhhhhhhh
Q 002247 765 LQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKKL 844 (947)
Q Consensus 765 L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~gr~~~~tk~~~~nk~~~~~i~~ 844 (947)
.+.-++.+.+++..|-.....-+.+...|++++.+|+.+|.+-+..+......+..+..+. ..+-.+.+.|++
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-------~~~E~l~rriq~ 84 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-------SNAEQLNRRIQL 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HhHHHHHhhHHH
Confidence 4556788888999999999999999999999999999999999998888877666554332 234589999999
Q ss_pred hhhhhhhchhhhhhHHHhhhhhhccccccccccccccCCCCCCchHHHHHHHHHHHHHhHhHHHHHHHHHhhhhcccccc
Q 002247 845 NKAELETSDNRIAVDEYRHMIRKGETCSEKGVTALASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKF 924 (947)
Q Consensus 845 ~e~~~e~s~~~~~~eke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~r~~~~e~el~~m~~rys~~sl~f 924 (947)
+|.+++.+...+. .....+.++=.....+-++...+|.+...+..||.+|.=+|
T Consensus 85 LEeele~ae~~L~--------------------------e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 85 LEEELEEAEKKLK--------------------------ETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHHHH--------------------------HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999887762 00011222223345566777777778888888888877777
Q ss_pred hhc
Q 002247 925 AEV 927 (947)
Q Consensus 925 aev 927 (947)
.++
T Consensus 139 ~~~ 141 (143)
T PF12718_consen 139 KEA 141 (143)
T ss_pred HHh
Confidence 665
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.31 E-value=0.23 Score=53.97 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=63.6
Q ss_pred HHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q 002247 744 AHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGL 818 (947)
Q Consensus 744 ~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~l 818 (947)
++-.|..+--.++..+..++.-+.++..+++++..+...+..-+.+++.++.||++++.++.+-.+-+...+.++
T Consensus 8 ~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 8 SLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666777777888888888999999999999999999999999999999999999999888888877
No 79
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.30 E-value=5.1 Score=42.96 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 002247 495 LEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQ 574 (947)
Q Consensus 495 LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ 574 (947)
|-.++.+....+......|.++|.-|..|-.+.+++.......+..+..++-..-.-....|.++. -|-
T Consensus 28 l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs-----------dl~ 96 (207)
T PF05010_consen 28 LKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS-----------DLH 96 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH-----------HHH
Confidence 334444556666667777777777777777777777777777776666555443322222222222 222
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHH-H-------HHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHH
Q 002247 575 DEFRRLSVDMASKFDENEKLAMKAMTEA-N-------EQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDK 646 (947)
Q Consensus 575 ~e~~~LS~qm~s~~~enEk~~~~A~~Ea-~-------eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k 646 (947)
.-|.+ ..+|...|-.||-...+.+.|. . ...+=+++-|+.|..||+++..++..|...+--|...+..-.-
T Consensus 97 ~ryek-~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~ 175 (207)
T PF05010_consen 97 KRYEK-QKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEM 175 (207)
T ss_pred HHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22322 3567778888999988888762 2 2334578889999999999999999999999888888876666
Q ss_pred HHHHHHHHHhhhhhhhh
Q 002247 647 QIQKMYLELDHSSSQLI 663 (947)
Q Consensus 647 ~ie~m~~el~~kSkqle 663 (947)
.+..+-..|+.|+++.+
T Consensus 176 ~~~SLe~~LeQK~kEn~ 192 (207)
T PF05010_consen 176 KVQSLEESLEQKTKENE 192 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555666666666555
No 80
>PRK09039 hypothetical protein; Validated
Probab=95.29 E-value=0.18 Score=56.93 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchh
Q 002247 637 LSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGET 716 (947)
Q Consensus 637 L~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~ 716 (947)
|+.++.-+.+.|.++..++.+-+..+. .+.....++..+|..|++.++-+...+..|-...
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~----le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~--------------- 104 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLS----LERQGNQDLQDSVANLRASLSAAEAERSRLQALL--------------- 104 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 455666666666666666655444444 5555666666677777776665555444332211
Q ss_pred hhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHH
Q 002247 717 DMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQ 796 (947)
Q Consensus 717 e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kq 796 (947)
+. .....+.++..+..+..+|...+..=.+.--.+..|+.+++.||.|...|..-|..-+......+.|
T Consensus 105 ----~~-------~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 105 ----AE-------LAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred ----hh-------hhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011123344444555667777766677777788888888888888888888888777777777778
Q ss_pred HHHHHHHHHhhH
Q 002247 797 VFQLKDELQKKK 808 (947)
Q Consensus 797 v~qLk~eL~kkE 808 (947)
+..|+.+|.+.=
T Consensus 174 i~~L~~~L~~a~ 185 (343)
T PRK09039 174 IADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHH
Confidence 887777776653
No 81
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.13 E-value=7.3 Score=43.83 Aligned_cols=182 Identities=19% Similarity=0.284 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHH
Q 002247 568 VTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQ 647 (947)
Q Consensus 568 ~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ 647 (947)
-.++++|.-+..++.+|...-+.|.+ ++..|..| .+.|..+-+||+..=..+...+..|.-+
T Consensus 107 el~~kFq~~L~dIq~~~ee~~~~~~k-----------~~~eN~~L-------~eKlK~l~eQye~rE~~~~~~~k~keLE 168 (309)
T PF09728_consen 107 ELSEKFQATLKDIQAQMEEQSERNIK-----------LREENEEL-------REKLKSLIEQYELREEHFEKLLKQKELE 168 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHH-----------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34677888888888888766655554 22223222 2344555666665544444444333333
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHhhhhHH-------HHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhH
Q 002247 648 IQKMYLELDHSSSQLIDEHKSEAQKHEALST-------EIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLI 720 (947)
Q Consensus 648 ie~m~~el~~kSkqle~~~~~~~~~~~~~s~-------ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l 720 (947)
++-+.--| .+-.-.-..+.+....+.. .|..+...=-.|+...+...+.. +.+..++..+....
T Consensus 169 ~Ql~~AKl----~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf-----~efq~tL~kSNe~F 239 (309)
T PF09728_consen 169 VQLAEAKL----EQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKF-----EEFQDTLNKSNEVF 239 (309)
T ss_pred HHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHH
Confidence 32222222 1111111223333333333 44444444444444333333333 22233344444455
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHH-------HHHHHhhhcccchhHHHHhhHHHHHHHHHHHH
Q 002247 721 QKWNRERDDLEKKFASAKQEAAKA-------HEELISMRSLKGENEMLIGNLQAEVENLKVQQ 776 (947)
Q Consensus 721 ~~~~~er~~L~~~ia~lk~Ea~~~-------~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~ 776 (947)
..+..|...+.++|..|.+|.... -.-|..|-..+.....-+..+...++.|..-|
T Consensus 240 ~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~Lc 302 (309)
T PF09728_consen 240 ETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLC 302 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666665555554333 33444444444444444444444444333333
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.98 E-value=6.1 Score=42.07 Aligned_cols=169 Identities=26% Similarity=0.353 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHh---HHHHhhhhhhhhccHHHHHHHHHHHHHHH
Q 002247 572 RLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKA---NDELSLIKDQNGVKLQELSDQLEQKDKQI 648 (947)
Q Consensus 572 ~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~---neeL~~~~~~~e~kl~eL~~q~d~K~k~i 648 (947)
+|++|...|-..|-.+-+.|=+++ .|...||.|-+-+--.|+++ ++||.. +
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~----~e~~~L~~q~~s~Qqal~~aK~l~eEled----------------------L 72 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLA----EEITDLRKQLKSLQQALQKAKALEEELED----------------------L 72 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H
Confidence 556666666665555555554443 45666777776655555554 444433 2
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHH
Q 002247 649 QKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERD 728 (947)
Q Consensus 649 e~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~ 728 (947)
-.+.-+|+...++|-.|-|+-+.-..-|..+|+-|..++.++..+.+.
T Consensus 73 k~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~-------------------------------- 120 (193)
T PF14662_consen 73 KTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDG-------------------------------- 120 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh--------------------------------
Confidence 223455566666666666666655555666666666666665553322
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHH
Q 002247 729 DLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQ 799 (947)
Q Consensus 729 ~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~q 799 (947)
+...+.-|-.+...++.-+....++...++..+.--...++.|+..+.+.+.--.+=-+|+-.|..|+.|
T Consensus 121 -lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 121 -LKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred -HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223333333444555555555566666677777777777777755555544433434555555555554
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.91 E-value=21 Score=47.99 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhh
Q 002247 646 KQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQ 694 (947)
Q Consensus 646 k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~ 694 (947)
..+++...+.+..-..+..++..-.+....+.++.+.|.++|..|..--
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~a 602 (1486)
T PRK04863 554 DELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA 602 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455555555555555565666666777777888888888888877633
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.41 E-value=2.2 Score=51.93 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=57.7
Q ss_pred hhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCCCC
Q 002247 751 MRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPV 825 (947)
Q Consensus 751 ~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~gr~ 825 (947)
|..+..+-|..=.-|..+++.|+..+..-..-......+...++.++-.+..++..|++......+.++.-.+.+
T Consensus 410 l~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~ 484 (594)
T PF05667_consen 410 LVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV 484 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 444555666666677777777777777666556666778889999999999999999998888888887776654
No 85
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.17 E-value=20 Score=44.48 Aligned_cols=180 Identities=19% Similarity=0.219 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH--HHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002247 435 HAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKI--QQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLIS 512 (947)
Q Consensus 435 e~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~--q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~t 512 (947)
++..|--...+++.-++.|+--+.+|...|--. +.+.|. ..-++....-...--||+.|-.+|.+-...+.+-...
T Consensus 416 e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe--~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~ 493 (786)
T PF05483_consen 416 EKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLE--IQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVN 493 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666778888888888888887666433 233332 2222222222333457777777777766777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhH
Q 002247 513 INELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENE 592 (947)
Q Consensus 513 I~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enE 592 (947)
.+.|...-+.|-++...=|..+-.--+.| .....|+.|..+.=+.|-.+-----..++-+-+++..-..+|-++++..|
T Consensus 494 ~nkLslEkk~laQE~~~~~~elKk~qedi-~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksE 572 (786)
T PF05483_consen 494 CNKLSLEKKQLAQETSDMALELKKQQEDI-NNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSE 572 (786)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 78888887888877776666555433333 34467777776665555444333345667888899999999999999988
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q 002247 593 KLAMKAMTEANEQRMQKAHLEEMLQ 617 (947)
Q Consensus 593 k~~~~A~~Ea~eLR~qk~~LEe~Lq 617 (947)
--+.--.-|......|-..||..+.
T Consensus 573 en~r~~e~e~~~k~kq~k~lenk~~ 597 (786)
T PF05483_consen 573 ENARSIECEILKKEKQMKILENKCN 597 (786)
T ss_pred HhhHHHHHHHhhhHHHHHHHHHHHH
Confidence 8877777777777777666665443
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=23 Score=44.66 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=89.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHH
Q 002247 558 ELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQEL 637 (947)
Q Consensus 558 aLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL 637 (947)
.+-|+++.+..+-.+ + ..|-+-++..+.+-.-.|..|...|-.+.-.+.+-|.|-++-+.+.+.--++ -++
T Consensus 709 ~~Lk~qLg~~~~~~~---~----~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~--a~~ 779 (970)
T KOG0946|consen 709 DLLKNQLGIISSKQR---D----LLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRS--AEL 779 (970)
T ss_pred HHHHHHhcccccchh---h----HHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--hhc
Confidence 455666665544321 1 1223346667777788899999999999999999998888887775543221 011
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccc
Q 002247 638 SDQLEQKDKQIQKMYLE----LDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVST 713 (947)
Q Consensus 638 ~~q~d~K~k~ie~m~~e----l~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~ 713 (947)
.+-.+.=..+-++=+.| |..++++++ .+..|+..++.+|..|.....+.-+.. .+.
T Consensus 780 ~~~~~~~~~~~qeqv~El~~~l~e~~~~l~-----------~~q~e~~~~keq~~t~~~~tsa~a~~l---------e~m 839 (970)
T KOG0946|consen 780 SQGSLNDNLGDQEQVIELLKNLSEESTRLQ-----------ELQSELTQLKEQIQTLLERTSAAADSL---------ESM 839 (970)
T ss_pred ccchhhhhhhhHHHHHHHHHhhhhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHhhhhhh---------HHh
Confidence 11111111122222222 233344444 455667777777777766554432211 133
Q ss_pred chhhhhHhhhhhHHHH----HHHHHHhHHHHHHHHHHHHHhhh
Q 002247 714 GETDMLIQKWNRERDD----LEKKFASAKQEAAKAHEELISMR 752 (947)
Q Consensus 714 ~e~e~~l~~~~~er~~----L~~~ia~lk~Ea~~~~~eL~~~k 752 (947)
+.++..+....+-+.+ |.++|....+.+..+-+.+..+.
T Consensus 840 ~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 840 GSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred hccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 3444444444444444 66666666666665555555544
No 87
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=5.1 Score=50.04 Aligned_cols=70 Identities=26% Similarity=0.336 Sum_probs=44.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Q 002247 580 LSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDH 657 (947)
Q Consensus 580 LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~ 657 (947)
|+...---|-++|.++.+|+.=-.+.-.|...-++ -.+++..|.- |+.++...+|.-+..+.||.-+|..
T Consensus 616 lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k----~~e~l~~~~~----kyK~lI~~lD~~~e~lkQ~~~~l~~ 685 (970)
T KOG0946|consen 616 LDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEK----YHEELDDIQQ----KYKGLIRELDYQIENLKQMEKELQV 685 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHH----HHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555556778888888888766666665554443 3444554443 3456777777777777777666633
No 88
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.81 E-value=23 Score=43.96 Aligned_cols=78 Identities=24% Similarity=0.201 Sum_probs=63.7
Q ss_pred HhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhh
Q 002247 735 ASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINR 813 (947)
Q Consensus 735 a~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~ 813 (947)
++|..|+-.+...|..-+.--.+.+.-...+|.|++.|+..|+.|-.- ...+.++++-+.|-..|..++.+|..+...
T Consensus 707 sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e-~r~~k~~~~q~lq~~ll~ve~~~k~~e~~~ 784 (961)
T KOG4673|consen 707 SLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVE-IRELKRKHKQELQEVLLHVELIQKDLEREK 784 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhhhCH
Confidence 889999999988888877666667777888999999999999887654 345667788888999999999998886654
No 89
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.80 E-value=13 Score=41.18 Aligned_cols=215 Identities=21% Similarity=0.248 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 002247 519 QVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKA 598 (947)
Q Consensus 519 q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A 598 (947)
.+..+|++|-+-++..|+.-+-=-+.-..|-.+-..|-.+|. ..|....+.++.|+...-..+
T Consensus 17 ~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le---~~~~~~l~~ak~eLqe~eek~-------------- 79 (258)
T PF15397_consen 17 FLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILE---YSNHKQLQQAKAELQEWEEKE-------------- 79 (258)
T ss_pred HHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH---ccChHHHHHHHHHHHHHHHHH--------------
Confidence 336677777777777777666555555566666666655553 455566677777766443333
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHH
Q 002247 599 MTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALST 678 (947)
Q Consensus 599 ~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ 678 (947)
=...+.|+.|...|...++++++||+-... |. -.+.-.|.-+|-.+ ..|+++.+..-.+-.++|++
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~T-Yk------D~EYPvK~vqIa~L-------~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLST-YK------DHEYPVKAVQIANL-------VRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------hhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999987554 22 12222344444333 33334444444444555555
Q ss_pred HHHHHHHHHHHHHHh--hhhhhhhccccCCCCCccccch-hhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhccc
Q 002247 679 EIHMLRTEIEKLRKE--QYNLSEHGKRRDDNKPKVSTGE-TDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLK 755 (947)
Q Consensus 679 ei~~Lkaeie~L~~e--~~~L~e~~~~~e~e~~k~s~~e-~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~k 755 (947)
-+++..+..++=... +.-|+-.+ ++ ++.. ...+++. +. +-...+.++..-|..-
T Consensus 146 ~~~~el~~l~~~~q~k~~~il~~~~-----~k---~~~~~~~~l~~~-~~--------------~N~~m~kei~~~re~i 202 (258)
T PF15397_consen 146 MRQMELASLSRKIQEKKEEILSSAA-----EK---TQSPMQPALLQR-TL--------------ENQVMQKEIVQFREEI 202 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HHhhchHHHHHH-HH--------------HHHHHHHHHHHHHHHH
Confidence 554444433221110 00011000 00 0000 0011111 11 2223344444445555
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHHhhHhHHH
Q 002247 756 GENEMLIGNLQAEVENLKVQQNKLQNSLIEEK 787 (947)
Q Consensus 756 dekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~ 787 (947)
++.+..|..|..||+.|.++--+.+..+|.+.
T Consensus 203 ~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dv 234 (258)
T PF15397_consen 203 DELEEEIPQLRAEVEQLQAQAQDPREVIFADV 234 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHhhHHH
Confidence 66778888999999999998888888887664
No 90
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=93.58 E-value=0.15 Score=48.89 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=66.0
Q ss_pred eeeccccC---cccceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--cCCc
Q 002247 21 QCNQVPKL---KKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--GSSK 95 (947)
Q Consensus 21 hAtQVP~~---gwdkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--GSSk 95 (947)
+|..+|.. |-+..||-++-...++...|| .|..| .||+|.-+.........++.++...|.|.- +.++
T Consensus 24 ~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kT---kv~~~----~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~ 96 (124)
T cd08389 24 RAQDIPTKDRGGASSWQVHLVLLPSKKQRAKT---KVQRG----PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRK 96 (124)
T ss_pred EecCCCchhcCCCCCcEEEEEEccCCcceeec---ccccC----CCCcccCEEEECCCCHHHhccCEEEEEEEECCCccc
Confidence 45667754 445567665444444444443 45544 499998776666567778888888888873 4567
Q ss_pred cccccceecchhhhhcccCCcccccccc
Q 002247 96 SGFLGEASIDFADFAAETEPLTLSLPLK 123 (947)
Q Consensus 96 SgiLGEasINlAdYa~a~kp~tVSLPLk 123 (947)
..+||+|.|+|+++ ....+.++-+||+
T Consensus 97 ~~~lG~~~i~L~~l-~~~~~~~~w~~L~ 123 (124)
T cd08389 97 ERLIGEKVVPLSQL-NLEGETTVWLTLE 123 (124)
T ss_pred CceEEEEEEecccc-CCCCCceEEEeCC
Confidence 89999999999999 4466777777775
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.44 E-value=8.5 Score=39.10 Aligned_cols=137 Identities=16% Similarity=0.226 Sum_probs=71.9
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHH
Q 002247 420 QKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKI 499 (947)
Q Consensus 420 qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eL 499 (947)
.|..+..+++-..+.+.+.|+-++.-|+.|.+..-.+...++.-.|- .+.|| ..|+++++.|-.++
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn-------~k~ei-------e~L~~el~~lt~el 68 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAEN-------SKAEI-------ETLEEELEELTSEL 68 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHH
Confidence 45666777787788899999999999999988876633344322221 22333 34555555554444
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 002247 500 KQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRR 579 (947)
Q Consensus 500 keQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~ 579 (947)
+....+...+...- ..+...-+++..++..++.-.-.+... .-.+|...++++=.-..+|+.||.+.+.
T Consensus 69 ~~L~~EL~~l~sEk----~~L~k~lq~~q~kv~eLE~~~~~~~~~-------l~~~E~ek~q~~e~~~~~ve~L~~ql~~ 137 (140)
T PF10473_consen 69 NQLELELDTLRSEK----ENLDKELQKKQEKVSELESLNSSLENL-------LQEKEQEKVQLKEESKSAVEMLQKQLKE 137 (140)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44443333333222 112222223333343333333332222 2222223444455556788899988877
Q ss_pred HH
Q 002247 580 LS 581 (947)
Q Consensus 580 LS 581 (947)
|.
T Consensus 138 L~ 139 (140)
T PF10473_consen 138 LN 139 (140)
T ss_pred hc
Confidence 63
No 92
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.32 E-value=25 Score=42.79 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHH
Q 002247 514 NELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEK 593 (947)
Q Consensus 514 ~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk 593 (947)
++|...|..+--+.+.+......|++...+.++.-= +..=-.+.+++....+|++++=..+.+.-
T Consensus 245 ~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i----------~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr----- 309 (546)
T KOG0977|consen 245 NELALAIREIRAQYEAISRQNRKDIESWYKRKIQEI----------RTSAERANVEQNYAREELRRIRSRISGLR----- 309 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HhhhccccchhHHHHHHHHHHHhcccchh-----
Confidence 456666666666666666666666666665554311 11112345666777788877655444321
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHh
Q 002247 594 LAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKH 673 (947)
Q Consensus 594 ~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~ 673 (947)
+=.++|-..|..|+.-+..-+-+|.--+..|+..|.+...++-.+-.++++++.|+ .+=-..+
T Consensus 310 ------~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~El-q~LlD~k---------- 372 (546)
T KOG0977|consen 310 ------AKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVEL-QKLLDTK---------- 372 (546)
T ss_pred ------hhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhchH----------
Confidence 12344555677777778888877777778899888888888888888888887777 2222233
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 002247 674 EALSTEIHMLRTEIEKLRKEQYNLSEHG 701 (947)
Q Consensus 674 ~~~s~ei~~Lkaeie~L~~e~~~L~e~~ 701 (947)
+.|.+||..-++ |++-+
T Consensus 373 -------i~Ld~EI~~YRk----LLege 389 (546)
T KOG0977|consen 373 -------ISLDAEIAAYRK----LLEGE 389 (546)
T ss_pred -------hHHHhHHHHHHH----Hhccc
Confidence 678899988888 87776
No 93
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.31 E-value=34 Score=44.37 Aligned_cols=107 Identities=20% Similarity=0.276 Sum_probs=75.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002247 671 QKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELIS 750 (947)
Q Consensus 671 ~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~ 750 (947)
-....|..+|+-|+.++..|++++..|.-+. ++.+..|........+|.+.|..++..+.+...|++.
T Consensus 654 ~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~------------~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~e 721 (1074)
T KOG0250|consen 654 VDEFSFDDEIEDLEREASRLQKEILELENQR------------REAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTE 721 (1074)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999777764333 3455666666666666777777777777777777666
Q ss_pred hhc----------ccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHh
Q 002247 751 MRS----------LKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLE 789 (947)
Q Consensus 751 ~k~----------~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~E 789 (947)
++. .-+++..-|.....++++..++..+++..+-.-+.+
T Consensus 722 l~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e 770 (1074)
T KOG0250|consen 722 LKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELE 770 (1074)
T ss_pred HhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 245566677777888888888888888777644433
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.22 E-value=37 Score=44.48 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
-+..++++|.|..+++...-++.|.|...-.-|..-|.+|.+
T Consensus 1247 ~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e 1288 (1758)
T KOG0994|consen 1247 DLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELRE 1288 (1758)
T ss_pred hhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888766555555555555555555555555544
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.16 E-value=3 Score=44.08 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh-HHHHhhHHHHHHHHHHHHHH
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI-EEKLEKDNLAKQVFQLKDEL 804 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls-~~~~EkE~l~kqv~qLk~eL 804 (947)
--.+|-.-|+.-..|+-.++..|-..+.--...+..++....++..+++++..|+...- ....|-+.|+.+|..++..+
T Consensus 55 ~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l 134 (194)
T PF15619_consen 55 TEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKL 134 (194)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence 33455555778888888888888888888888889999999999999999999988755 57788899999999999999
Q ss_pred HhhHHHHhhhhhhccccCCCCch-hhhchhHHHHhhhhhhhhhhhhhhchhhh
Q 002247 805 QKKKEEINRTGKGLKKYGGPVSD-AQMTSMKERLRKGQKKLNKAELETSDNRI 856 (947)
Q Consensus 805 ~kkE~~~~~~ek~lk~~~gr~~~-~tk~~~~nk~~~~~i~~~e~~~e~s~~~~ 856 (947)
...+..+..+++.+.-.++...- -..-..+...++..++.+..++....+..
T Consensus 135 ~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 135 QEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877665400 00011123666666777777777766666
No 96
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.00 E-value=27 Score=42.31 Aligned_cols=251 Identities=16% Similarity=0.292 Sum_probs=150.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHH-------HhhhhhhhHHHHH
Q 002247 502 QSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRK-------TRWKNTVTAERLQ 574 (947)
Q Consensus 502 Q~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk-------~r~~na~~~e~LQ 574 (947)
..-+|..+...|..++..+..++ .++......|+.+.....++..+.....+..+. .|+.+..+++.|.
T Consensus 92 ~~~rf~ka~~~i~~~~~~l~~~e----~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le 167 (560)
T PF06160_consen 92 DKYRFKKAKQAIKEIEEQLDEIE----EDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELE 167 (560)
T ss_pred hcccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHH
Confidence 45567777777766666655544 445567777777777766666666655554433 4556677777787
Q ss_pred HHHHHHHHHhhhhhhhhHHHHH-----HHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHH---
Q 002247 575 DEFRRLSVDMASKFDENEKLAM-----KAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDK--- 646 (947)
Q Consensus 575 ~e~~~LS~qm~s~~~enEk~~~-----~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k--- 646 (947)
+.+..|- +.|+.=+.+|- +|-.-...++..-..|+.++.++=.=+..++..+-.+|++|..-...+..
T Consensus 168 ~~L~~ie----~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy 243 (560)
T PF06160_consen 168 KQLENIE----EEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGY 243 (560)
T ss_pred HHHHHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC
Confidence 7776654 45666666664 57777788899999999999999888888888888888888654443222
Q ss_pred ---------HHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhh
Q 002247 647 ---------QIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETD 717 (947)
Q Consensus 647 ---------~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e 717 (947)
.|++|-..+......+.+.. .......++.+..+|+.|-. .+|.. .+
T Consensus 244 ~l~~~~i~~~i~~i~~~l~~~~~~L~~l~------l~~~~~~~~~i~~~Id~lYd----~le~E--------------~~ 299 (560)
T PF06160_consen 244 YLEHLDIEEEIEQIEEQLEEALALLKNLE------LDEVEEENEEIEERIDQLYD----ILEKE--------------VE 299 (560)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHHHH----HHHHH--------------HH
Confidence 22222222222222222110 11112222222233322221 11111 00
Q ss_pred hhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc---ccchhHHHHhhHHHHHHHHHHHHHHHHhhHhH
Q 002247 718 MLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS---LKGENEMLIGNLQAEVENLKVQQNKLQNSLIE 785 (947)
Q Consensus 718 ~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~---~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~ 785 (947)
+. +.-......+..-|.-+++....+..|+..++. +.+......+.+..++..+..++..+.+.+..
T Consensus 300 Ak-~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~ 369 (560)
T PF06160_consen 300 AK-KYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEE 369 (560)
T ss_pred HH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 00 011122345556667777778888888888765 56666667788888999998888888887763
No 97
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.94 E-value=15 Score=39.41 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhh
Q 002247 570 AERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQ 629 (947)
Q Consensus 570 ~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~ 629 (947)
.+.+.+.++.|..+ +.+-|.-+-.|-..+..|-.+...||.-|....+....+++.
T Consensus 171 e~~~e~~i~~L~~~----lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 171 EDEYEEKIRDLEEK----LKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666554 444566666677777777777777777777766665555443
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.88 E-value=7.4 Score=44.00 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=45.9
Q ss_pred hhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhH-------HHHhhHHHHHHHHHHHHHHHHhhHhHHH
Q 002247 715 ETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENE-------MLIGNLQAEVENLKVQQNKLQNSLIEEK 787 (947)
Q Consensus 715 e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE-------~~i~~L~~E~e~Lk~q~~~Lk~sls~~~ 787 (947)
.+..-|.....+-....++|+.|..++-.++.-+...-..+++.- ..-+.|+.|+..|+..|.++-..|.+.+
T Consensus 217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444455555555555444444444444332 2345577788888888888888888777
Q ss_pred HhhHHHHH
Q 002247 788 LEKDNLAK 795 (947)
Q Consensus 788 ~EkE~l~k 795 (947)
.|.-++++
T Consensus 297 EElk~lR~ 304 (306)
T PF04849_consen 297 EELKTLRK 304 (306)
T ss_pred HHHHHhhC
Confidence 77776665
No 99
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.79 E-value=21 Score=40.55 Aligned_cols=213 Identities=20% Similarity=0.292 Sum_probs=109.1
Q ss_pred hhhhhhhHHHH-HHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhh-------hhhhhHHH---H-HHHHhh---
Q 002247 344 KEVSAHLRLQL-EKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESK-------LVREDQLA---L-EALAKE--- 408 (947)
Q Consensus 344 Ke~NaNL~lQL-qKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~-------n~d~~q~~---l-e~Lvk~--- 408 (947)
|+..-.|+..+ |-.-+.|..|---+..||+.|......|..|.+.+.... +.+++... . .++...
T Consensus 74 kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~ 153 (306)
T PF04849_consen 74 KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESS 153 (306)
T ss_pred HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccc
Confidence 55555666666 666778888888888899999888888888877554222 11110000 0 000000
Q ss_pred --cCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHH
Q 002247 409 --RNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIK 486 (947)
Q Consensus 409 --~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~ 486 (947)
.....-+..|++|+-.|..|....+.+...|.. +.. .+|+.+.|-+ .+| ...+.
T Consensus 154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~-------et~-----------~~EekEqqLv---~dc---v~QL~ 209 (306)
T PF04849_consen 154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKT-------ETD-----------TYEEKEQQLV---LDC---VKQLS 209 (306)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHh-----------hccHHHHHHH---HHH---HHHhh
Confidence 001234567777777766543333333322222 211 1111112211 122 33334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 002247 487 ELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN 566 (947)
Q Consensus 487 eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~n 566 (947)
+.-.||-.|..+|-....++..-=..|..|-+||-.|++ |. ..+
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~-------------------------r~-----------k~~ 253 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQ-------------------------RC-----------KQL 253 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HH-----------HHH
Confidence 445555555555555555555555555444444444332 22 112
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhh
Q 002247 567 TVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIK 627 (947)
Q Consensus 567 a~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~ 627 (947)
++..|.| ..++..+-+..-.++ +|..+|+....-.-+||+.|++||+..+
T Consensus 254 ~~EnEeL-------~q~L~~ske~Q~~L~----aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 254 AAENEEL-------QQHLQASKESQRQLQ----AELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred hhhHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222 233333444444443 3577888888899999999999998844
No 100
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.42 E-value=7.9 Score=42.45 Aligned_cols=100 Identities=23% Similarity=0.218 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhH----HHHHHHHH
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKD----NLAKQVFQ 799 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE----~l~kqv~q 799 (947)
..+...|..++.-+++....+..+|..+.....+++.-+..|+..+..+.....+.+..+..+..+.. .+..|.-.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~ 167 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREE 167 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777666666677777888888888888888888888887766655 45555555
Q ss_pred HHHHHHhhHHHHhhhhhhccccCCCC
Q 002247 800 LKDELQKKKEEINRTGKGLKKYGGPV 825 (947)
Q Consensus 800 Lk~eL~kkE~~~~~~ek~lk~~~gr~ 825 (947)
|+.+|-. +.+.-.+.=+++..|.+
T Consensus 168 L~~~l~~--ell~~yeri~~~~kg~g 191 (239)
T COG1579 168 LKEKLDP--ELLSEYERIRKNKKGVG 191 (239)
T ss_pred HHHhcCH--HHHHHHHHHHhcCCCce
Confidence 5555432 23444444444443443
No 101
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.37 E-value=23 Score=40.03 Aligned_cols=106 Identities=25% Similarity=0.316 Sum_probs=62.7
Q ss_pred HHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHh
Q 002247 405 LAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLAT 484 (947)
Q Consensus 405 Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~ 484 (947)
|-+.-.++........++.+|..+|+..+....++..+|.+|..+......+=..+.-+..+ + -.-
T Consensus 143 L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De-----~---------Rke 208 (294)
T COG1340 143 LRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADE-----L---------RKE 208 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---------HHH
Confidence 44444445555666678888888899889999999999988888754332211111111111 1 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002247 485 IKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK 524 (947)
Q Consensus 485 I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLe 524 (947)
++++|..+...-...++.+.+|-.....|..+...+..|.
T Consensus 209 ade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 209 ADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666655555555444
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.22 E-value=35 Score=41.79 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 002247 484 TIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDK 529 (947)
Q Consensus 484 ~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~ 529 (947)
.|..+...++.++.++.+...+.-.....+..++.++..+++++.+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555544444444445555555555555555543
No 103
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.20 E-value=24 Score=39.84 Aligned_cols=280 Identities=20% Similarity=0.296 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH-----hhh
Q 002247 491 QSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKT-----RWK 565 (947)
Q Consensus 491 q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~-----r~~ 565 (947)
.+...++++.-..++|++.+.....++.++..+ .++...+..+.+.+..++. |++.+-.-|-.. |.|
T Consensus 16 ~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~----~Kk~~~l~kek~~l~~E~~----k~~~~k~KLE~LCRELQk~N 87 (309)
T PF09728_consen 16 KLSSPEEKLEALCKKYAELLEEMKRLQKQLKKL----QKKQEQLQKEKDQLQSELS----KAILAKSKLESLCRELQKQN 87 (309)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 334446677777888888888887766665544 4555566666666666555 444443333222 223
Q ss_pred hhhhHH--HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHH
Q 002247 566 NTVTAE--RLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQ 643 (947)
Q Consensus 566 na~~~e--~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~ 643 (947)
+.+--| ++.++-..--..|+..|. .+|.+++..=.+...--..+-.-|+.|+. |+..|..|.+.
T Consensus 88 k~lkeE~~~~~~eee~kR~el~~kFq-------~~L~dIq~~~ee~~~~~~k~~~eN~~L~e-------KlK~l~eQye~ 153 (309)
T PF09728_consen 88 KKLKEESKRRAREEEEKRKELSEKFQ-------ATLKDIQAQMEEQSERNIKLREENEELRE-------KLKSLIEQYEL 153 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccchhHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 222221 122333333444555553 23344433333333222334455666655 78888888888
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhh
Q 002247 644 KDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKW 723 (947)
Q Consensus 644 K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~ 723 (947)
+-.+++.++ +.+.|+-| =...-|.+...+..++-++...+...|++.+. ....+...-.++...|...
T Consensus 154 rE~~~~~~~-----k~keLE~Q-----l~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~--~~~~~~~~E~~Lr~QL~~Y 221 (309)
T PF09728_consen 154 REEHFEKLL-----KQKELEVQ-----LAEAKLEQQQEEAEQEKEKAKQEKEILLEEAA--QVQTLKETEKELREQLNLY 221 (309)
T ss_pred HHHHHHHHh-----hHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 777776653 34444410 01112333334444455555544443333331 0011111111111222222
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHH
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDE 803 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~e 803 (947)
.-.-.++..+++---+--...+.|+ ++--..+..|-.|...++..|...-..|..-..|+..+.+++..++..
T Consensus 222 ~~Kf~efq~tL~kSNe~F~tfk~Em-------ekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k 294 (309)
T PF09728_consen 222 SEKFEEFQDTLNKSNEVFETFKKEM-------EKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKK 294 (309)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222112222222222 233345677888999999999999999998888888888888777777
Q ss_pred HHhhHHHHh
Q 002247 804 LQKKKEEIN 812 (947)
Q Consensus 804 L~kkE~~~~ 812 (947)
+.+-+. ++
T Consensus 295 ~~kLe~-Lc 302 (309)
T PF09728_consen 295 IEKLEK-LC 302 (309)
T ss_pred HHHHHH-HH
Confidence 777766 44
No 104
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.93 E-value=61 Score=43.92 Aligned_cols=263 Identities=14% Similarity=0.201 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHhHHHHHhhhHHHH
Q 002247 489 ESQSERLEDKIKQQSEEYSESLISINELECQVKELKREL-------------------DKQAQEFEDDIDAVTHAKTEQE 549 (947)
Q Consensus 489 e~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekEL-------------------e~Qaq~fe~dl~a~~~~~~EqE 549 (947)
|.+++.|..+...-...|...-..|..++.-..+++.=+ ..+....+..|.........+-
T Consensus 785 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 864 (1486)
T PRK04863 785 EKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQR 864 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888988888888888888888877777555555311 2222223333333333333333
Q ss_pred HHHHHHHHHH---HHHhhhhh-hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-----------------HHHHHHhh
Q 002247 550 QRAIRAEEEL---RKTRWKNT-VTAERLQDEFRRLSVDMASKFDENEKLAMKAMT-----------------EANEQRMQ 608 (947)
Q Consensus 550 qRai~aeeaL---rk~r~~na-~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~-----------------Ea~eLR~q 608 (947)
+++.++.+.| ++.----. +..+-|.++|.-+..|+....++.. .+.+-.. .-..||.+
T Consensus 865 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~-y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e 943 (1486)
T PRK04863 865 SQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEAEEAKR-FVQQHGNALAQLEPIVSVLQSDPEQFEQLKQD 943 (1486)
T ss_pred HHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3333333322 22222222 2334488888888888877665542 1221111 22346667
Q ss_pred HHHHHHHHHHhHHHHhhhhhhhh--------------ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhh
Q 002247 609 KAHLEEMLQKANDELSLIKDQNG--------------VKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHE 674 (947)
Q Consensus 609 k~~LEe~Lqk~neeL~~~~~~~e--------------~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~ 674 (947)
..+.+..++.++..+..+.+=.. .+-.+|+.++..+.+.|++....+...=++.+.+...-..+..
T Consensus 944 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~ 1023 (1486)
T PRK04863 944 YQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLA 1023 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766554222 2345677788888888888888887777777766666666666
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 002247 675 ALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMR 752 (947)
Q Consensus 675 ~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k 752 (947)
.+...++-+......+..+.+.|-=.+-....+....--.++...|......|.+|+.++.+.+.|+..+...|....
T Consensus 1024 slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~ 1101 (1486)
T PRK04863 1024 SLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLE 1101 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766666666666555553333111111222223556666777777777777777777777777766665443
No 105
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.58 E-value=21 Score=37.90 Aligned_cols=142 Identities=22% Similarity=0.295 Sum_probs=83.7
Q ss_pred hhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhh-hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhh
Q 002247 282 KRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQS-EEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDS 360 (947)
Q Consensus 282 KrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~-e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQES 360 (947)
-+-.+|.-+|..+..+-+.|+.|..-||..+.. ..++.+++-. ++.+..++-=-.+|+ .+|+-+|.++|+.
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~R-q~kAL~k~e~~e~~Lpqll~~h~eEv-------r~Lr~~LR~~q~~ 83 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKR-QEKALQKYEDTEAELPQLLQRHNEEV-------RVLRERLRKSQEQ 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 334456666666666666666666666655541 1222222111 112222333333333 3577799999999
Q ss_pred hHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHH
Q 002247 361 NAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLE 440 (947)
Q Consensus 361 N~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le 440 (947)
+-++---++|.++-|..-+-++..|. .|+.... -.|...|..++.++...++.-.+....|+
T Consensus 84 ~r~~~~klk~~~~el~k~~~~l~~L~-----------------~L~~dkn-L~eReeL~~kL~~~~~~l~~~~~ki~~Le 145 (194)
T PF15619_consen 84 ERELERKLKDKDEELLKTKDELKHLK-----------------KLSEDKN-LAEREELQRKLSQLEQKLQEKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888887777766555554433 2443322 23567788888888887777677777777
Q ss_pred HHHHHHHHH
Q 002247 441 IYIKQLTED 449 (947)
Q Consensus 441 ~kmeQLe~D 449 (947)
.+++-....
T Consensus 146 k~leL~~k~ 154 (194)
T PF15619_consen 146 KQLELENKS 154 (194)
T ss_pred HHHHHHhhH
Confidence 766554444
No 106
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.37 E-value=10 Score=38.49 Aligned_cols=61 Identities=28% Similarity=0.309 Sum_probs=44.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhh
Q 002247 730 LEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEK 790 (947)
Q Consensus 730 L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~Ek 790 (947)
|..+|.-+-.+...+..+|.++++.|+.....+...+..|.+|..-+..+.+.|..-+.++
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek 117 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEK 117 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333333334444457788888888888888888899999999998888888888666664
No 107
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.78 E-value=57 Score=41.42 Aligned_cols=137 Identities=20% Similarity=0.180 Sum_probs=72.6
Q ss_pred hHHHHhhhhhhhhccHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 002247 619 ANDELSLIKDQNGVKLQELSDQLEQK---DKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQY 695 (947)
Q Consensus 619 ~neeL~~~~~~~e~kl~eL~~q~d~K---~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~ 695 (947)
.+.+|.--..|.+.|-.-|-.++..| .+.+++|++.+ +.-...-.++..+=-+-|-.++-+|+.++.
T Consensus 264 sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~l----------kqt~t~a~gdseqatkylh~enmkltrqka 333 (1265)
T KOG0976|consen 264 SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTL----------KQTRTRADGDSEQATKYLHLENMKLTRQKA 333 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----------HHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555544444 34454454444 334444455555666677777777776665
Q ss_pred hhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHH
Q 002247 696 NLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQ 775 (947)
Q Consensus 696 ~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q 775 (947)
+|--. .-|.-.++..++..+++|+++-+.+---|..+++=+ .-.++.++.|.++-..+..|
T Consensus 334 dirc~------------LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k-------~nve~elqsL~~l~aerqeQ 394 (1265)
T KOG0976|consen 334 DIRCA------------LLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKK-------ENVEEELQSLLELQAERQEQ 394 (1265)
T ss_pred HHHHH------------HHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 53111 112223334445555666555544444444433333 33345566677777777778
Q ss_pred HHHHHhhHh
Q 002247 776 QNKLQNSLI 784 (947)
Q Consensus 776 ~~~Lk~sls 784 (947)
.+.||+.++
T Consensus 395 idelKn~if 403 (1265)
T KOG0976|consen 395 IDELKNHIF 403 (1265)
T ss_pred HHHHHHhhh
Confidence 888887776
No 108
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.76 E-value=53 Score=41.00 Aligned_cols=156 Identities=20% Similarity=0.278 Sum_probs=85.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002247 432 FKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLI 511 (947)
Q Consensus 432 ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~ 511 (947)
|++...++....--+++-|+.=++.+|.+.-.|.+.+-+ +++|++.|-.++-..+...-.-.+
T Consensus 78 ~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a-----------------~~~~e~~lq~q~e~~~n~~q~~~~ 140 (716)
T KOG4593|consen 78 HKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEA-----------------LKGQEEKLQEQLERNRNQCQANLK 140 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888889999999888877777664422 233333332222222222222333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 002247 512 SINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDEN 591 (947)
Q Consensus 512 tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~en 591 (947)
.+.+|-.....=-.|+......|..-+-.++....=|+.+|.+-+-.|.+--.....-..+++++...+-.
T Consensus 141 k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~--------- 211 (716)
T KOG4593|consen 141 KELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQE--------- 211 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44444444444445566666666666666666777777777666555544444444444444444333211
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 002247 592 EKLAMKAMTEANEQRMQKAHLEEML 616 (947)
Q Consensus 592 Ek~~~~A~~Ea~eLR~qk~~LEe~L 616 (947)
.-.++.+...-++|++..+..|
T Consensus 212 ---~~~~l~e~~~~~qq~a~~~~ql 233 (716)
T KOG4593|consen 212 ---LQASLEERADHEQQNAELEQQL 233 (716)
T ss_pred ---HHHHHHHHHHHHHHHhhHHHHH
Confidence 1234455555556665555544
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.60 E-value=21 Score=36.11 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHH
Q 002247 417 MLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLE 496 (947)
Q Consensus 417 ~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE 496 (947)
.++.++-++..+......+...|..++.+|+.+.+.+...=.++-.+|+++.-.. .+...|...|+.||
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-----------~~~E~l~rriq~LE 86 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-----------SNAEQLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------HhHHHHHhhHHHHH
Confidence 3444444444433333344445555555555555555442222222444443322 22234555555555
Q ss_pred HHHHHHHHHHhhhhhhH
Q 002247 497 DKIKQQSEEYSESLISI 513 (947)
Q Consensus 497 ~eLkeQ~~efSe~l~tI 513 (947)
++|......+.+....+
T Consensus 87 eele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555444444333
No 110
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.60 E-value=61 Score=41.46 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHH
Q 002247 573 LQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMY 652 (947)
Q Consensus 573 LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~ 652 (947)
.+.=+..++.+++..--.-|+++..|-+=+..+++|...||--++.+.-+.+...++-+ +|.+..-|++.=..+.++-.
T Consensus 331 ~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e-qLr~elaql~a~r~q~eka~ 409 (980)
T KOG0980|consen 331 RELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE-QLRNELAQLLASRTQLEKAQ 409 (980)
T ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555554444455555555555666666666666666666555555444444 33333333333333333322
Q ss_pred HHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHH
Q 002247 653 LELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEK 732 (947)
Q Consensus 653 ~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~ 732 (947)
.-++.+ +.+.-+...-++-||..+.+|..+-..|+..+ .....+++...+. ++.+.+
T Consensus 410 ~~~ee~-----------e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~--------~di~kQle~~~~s----~~~~~~ 466 (980)
T KOG0980|consen 410 VLVEEA-----------ENKALAAENRYEKLKEKYTELRQEHADLLRKY--------DDIQKQLESAEQS----IDDVEE 466 (980)
T ss_pred HHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHh----HHHHHH
Confidence 111111 11112223345567777777777666665544 1122222222222 224555
Q ss_pred HHHhHHHHHHHHHHHHHh
Q 002247 733 KFASAKQEAAKAHEELIS 750 (947)
Q Consensus 733 ~ia~lk~Ea~~~~~eL~~ 750 (947)
+...|-+.++.+..+...
T Consensus 467 ~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555544
No 111
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=90.37 E-value=57 Score=40.79 Aligned_cols=251 Identities=25% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHH
Q 002247 499 IKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEE-ELRKTRWKNTVTAERLQDEF 577 (947)
Q Consensus 499 LkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aee-aLrk~r~~na~~~e~LQ~e~ 577 (947)
|..|..=.|--+..|--||..+..|.+---.|-+.+++.-..|.... +.++|-+||. -||-..-.-.+.--+|.+..
T Consensus 61 lsqqaelis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~--~ae~agraEae~Lraala~ae~~R~~lEE~~ 138 (739)
T PF07111_consen 61 LSQQAELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALA--RAEKAGRAEAEELRAALAGAEVVRKNLEEGS 138 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHhhHHHHHHhhHHHH
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Q 002247 578 RRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDH 657 (947)
Q Consensus 578 ~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~ 657 (947)
.+ .+.|+..++ +.+|.-|-+.-.++|.+ +..|.++|-+.+....-..-....+|..
T Consensus 139 q~------------------ELee~q~~H--qeql~~Lt~aHq~~l~s----L~~k~~~Le~~L~~le~~r~~e~~~La~ 194 (739)
T PF07111_consen 139 QR------------------ELEEAQRLH--QEQLSSLTQAHQEALAS----LTSKAEELEKSLESLETRRAGEAKELAE 194 (739)
T ss_pred HH------------------HHHHHHHHH--HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhHHHHhhhhHHH---HHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHH
Q 002247 658 SSSQLIDEHKSEAQKHEALSTE---IHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKF 734 (947)
Q Consensus 658 kSkqle~~~~~~~~~~~~~s~e---i~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~i 734 (947)
..++.+-++.+=-..+++|... ++.|+.-|+.+.- .+-.-+.|..||.+|
T Consensus 195 ~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p-----------------------~~~~~~~we~Er~~L---- 247 (739)
T PF07111_consen 195 AQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVP-----------------------PEVHSQAWEPEREEL---- 247 (739)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCC-----------------------cccccHHHHHHHHHH----
Q ss_pred HhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh---HHHHhhH-------------------H
Q 002247 735 ASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI---EEKLEKD-------------------N 792 (947)
Q Consensus 735 a~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls---~~~~EkE-------------------~ 792 (947)
+++|++++.++. .|+.-++-|-....-|+|.|. ++...|- -
T Consensus 248 -------------~~tVq~L~edR~----~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~ 310 (739)
T PF07111_consen 248 -------------LETVQHLQEDRD----ALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSR 310 (739)
T ss_pred -------------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhhhcc
Q 002247 793 LAKQVFQLKDELQKKKEEINRTGKGLK 819 (947)
Q Consensus 793 l~kqv~qLk~eL~kkE~~~~~~ek~lk 819 (947)
-+.|||.|---|+..|-+....-++|+
T Consensus 311 WREKVFaLmVQLkaQeleh~~~~~qL~ 337 (739)
T PF07111_consen 311 WREKVFALMVQLKAQELEHRDSVKQLR 337 (739)
T ss_pred HHHHHHHHHHHhhHHHHHhhhHHHHHH
No 112
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=61 Score=40.64 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=55.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHH-------HHHhhHhHHHHhhHHHHHHHHHHH
Q 002247 729 DLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQN-------KLQNSLIEEKLEKDNLAKQVFQLK 801 (947)
Q Consensus 729 ~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~-------~Lk~sls~~~~EkE~l~kqv~qLk 801 (947)
.+-++|..+.+....+..|+..+-..=++-...+..|..++++--.-+- ...+....=..++..|..||.+|+
T Consensus 437 ~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~ 516 (698)
T KOG0978|consen 437 ELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLK 516 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555577788888887777777788888777765322221 122222233445667788888887
Q ss_pred HHHHhhHHHHhhhhhhccc
Q 002247 802 DELQKKKEEINRTGKGLKK 820 (947)
Q Consensus 802 ~eL~kkE~~~~~~ek~lk~ 820 (947)
.--.+-+..+..++.++.-
T Consensus 517 ~~~~~~~~~i~~leeq~~~ 535 (698)
T KOG0978|consen 517 ASVDKLELKIGKLEEQERG 535 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777666666666655443
No 113
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.83 E-value=25 Score=39.80 Aligned_cols=134 Identities=21% Similarity=0.251 Sum_probs=83.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 002247 429 IQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSE 508 (947)
Q Consensus 429 ie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe 508 (947)
++..+.|...|..+++.+..-+..|.+.--.|--++.+ ++. ...|+..|-++. ...+..+|..+..++..
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~--L~~--~~~e~~~~d~~e------L~~lk~~l~~~~~ei~~ 222 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ--LKQ--LEDELEDCDPTE------LDRAKEKLKKLLQEIMI 222 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--hHHHHHhCCHHH------HHHHHHHHHHHHHHHHH
Confidence 44445566666666666665555555533333333333 444 445555555332 23344444444444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 002247 509 SLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVD 583 (947)
Q Consensus 509 ~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~q 583 (947)
....+ .+++.+.....+++++....+.+.......|+--+...|.=....+.+|...|..|...
T Consensus 223 ~~~~l-----------~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 223 KVKKL-----------EELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 44444 33444455667777888888899999999999999999999999999999999888654
No 114
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=89.76 E-value=0.78 Score=43.57 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=62.6
Q ss_pred eeeccccCcc---cceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee-c-cCCc
Q 002247 21 QCNQVPKLKK---SAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS-T-GSSK 95 (947)
Q Consensus 21 hAtQVP~~gw---dkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs-~-GSSk 95 (947)
.|..+|..+. ---||.| ..|+...|| ++.-.+-++.|...++= .+.+..++...+....|.|. - ..++
T Consensus 7 ~A~~L~~~d~~g~~dpYv~v---~l~~~~~kT-~v~~~t~nP~Wne~f~F---~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 7 QARGLLCKGKSGTNDAYVII---QLGKEKYST-SVKEKTTSPVWKEECSF---ELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred ECcCCcCCCCCcCCCceEEE---EECCeeeee-eeecCCCCCEeCceEEE---EecCcccCCCcCCEEEEEEEEccccCC
Confidence 4556664322 2234444 346655543 33334456677665422 12222223445556677664 2 3457
Q ss_pred cccccceecchhhhhc-ccCCcccccccccCC-----CCCeeeeeee
Q 002247 96 SGFLGEASIDFADFAA-ETEPLTLSLPLKFAN-----SGAVLHVTIE 136 (947)
Q Consensus 96 SgiLGEasINlAdYa~-a~kp~tVSLPLk~cn-----sGtvLHVtIQ 136 (947)
..++|.+.|.+++... ...+...-+||...+ ...=|||+||
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 8899999999999863 345667888987532 3356788887
No 115
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.55 E-value=63 Score=40.02 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhh
Q 002247 247 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISL 294 (947)
Q Consensus 247 ~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~L 294 (947)
.-.+.|+.|.+.|......+-.++.+|+++--.-..+-+.|.+.|+.|
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999888899999999888888888888876554
No 116
>PRK11281 hypothetical protein; Provisional
Probab=88.94 E-value=80 Score=41.68 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=97.5
Q ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhH
Q 002247 530 QAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQK 609 (947)
Q Consensus 530 Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk 609 (947)
++..|-.+++.......+..+++..|-..++..+ +++..|......... ... ...+. +.|-.+-
T Consensus 67 ~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~-----------~~Le~Lk~~~~~~~~--~~~--~~~Sl-~qLEq~L 130 (1113)
T PRK11281 67 QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQ-----------AELEALKDDNDEETR--ETL--STLSL-RQLESRL 130 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHhhcccccccc--ccc--cccCH-HHHHHHH
Confidence 4566677777777777777777777766655443 334444432211110 111 11222 2244555
Q ss_pred HHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH----HHHhhhhHHHHHHHHH
Q 002247 610 AHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSE----AQKHEALSTEIHMLRT 685 (947)
Q Consensus 610 ~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~----~~~~~~~s~ei~~Lka 685 (947)
..++..|+.++..|.. |.+.+-.+.++.+.=...|-.....+....+++.+..-.. +.....+..|..+|++
T Consensus 131 ~q~~~~Lq~~Q~~La~----~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~ 206 (1113)
T PRK11281 131 AQTLDQLQNAQNDLAE----YNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNA 206 (1113)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5666667777666666 6666666666555555554444444444444554322222 4556677888888888
Q ss_pred HHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002247 686 EIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELIS 750 (947)
Q Consensus 686 eie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~ 750 (947)
+|+-+..+... ......-....++.+..++..+..++..+++-++.
T Consensus 207 ~~~~~~~~l~~-------------------~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 207 QNDLQRKSLEG-------------------NTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHhc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777763221 11122223344455555555555555555555555
No 117
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=88.78 E-value=2.8 Score=39.48 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=61.4
Q ss_pred eeeeeccccCccc---ceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee--ccC
Q 002247 19 QFQCNQVPKLKKS---AVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--TGS 93 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GS 93 (947)
-+.|..+|...+. .-||.|.....++.+.||. ..-.+-+..|..++.=.+. . + ......|.|- ...
T Consensus 7 v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~-~~~~t~~P~Wne~f~f~i~----~--~--~~~~L~i~v~d~d~~ 77 (126)
T cd04043 7 IVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTR-TIYDTLNPRWDEEFELEVP----A--G--EPLWISATVWDRSFV 77 (126)
T ss_pred EEEeECCCCCCCCCCCCceEEEEECCCCeeeeccc-EecCCCCCcccceEEEEcC----C--C--CCCEEEEEEEECCCC
Confidence 4678888765433 2456665333223344433 2223445556555432221 1 1 1234445554 234
Q ss_pred Cccccccceecchhhhhcc--cCCcccccccccCCCCCeeeeeeeeccC
Q 002247 94 SKSGFLGEASIDFADFAAE--TEPLTLSLPLKFANSGAVLHVTIEKMDG 140 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a--~kp~tVSLPLk~cnsGtvLHVtIQ~L~~ 140 (947)
.+..++|++.|+++++.-. -.+..+.+||.. .|.| |+.|..-+.
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i-~l~~~~~~~ 123 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRL-LLRVSMEGE 123 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeE-EEEEEEeee
Confidence 4788999999999987432 345668999976 5766 877765444
No 118
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.65 E-value=1.3 Score=36.93 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhh
Q 002247 765 LQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKK 807 (947)
Q Consensus 765 L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kk 807 (947)
|--+|+.||++|+.|+.-...=..|+++|+.+|..|++.|..|
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~k 45 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQMK 45 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4557888899999988888777888999999999999988654
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=81 Score=40.05 Aligned_cols=116 Identities=25% Similarity=0.306 Sum_probs=77.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHH----HHHHHHHHHHHHHHHHHHHhh
Q 002247 433 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKE----LESQSERLEDKIKQQSEEYSE 508 (947)
Q Consensus 433 kke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~e----Le~q~e~LE~eLkeQ~~efSe 508 (947)
.-+++.|...|+++..-.--|..|-..+-.+|++.+.-+. +-+.-...+.- -+.=++.+...+.+.+++--.
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~----~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~es 560 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHK----ETTQRKSELEAARRKKELIRQAIKDQLDELSKETES 560 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhcc----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666667777777778888766551 22222222222 255677788888888888889
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHH
Q 002247 509 SLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRA 552 (947)
Q Consensus 509 ~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRa 552 (947)
.+..|.-+.+|++.|..+..+|....+.-...=.---+++|..+
T Consensus 561 k~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~ 604 (1118)
T KOG1029|consen 561 KLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKA 604 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776654443332333444443
No 120
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.40 E-value=61 Score=38.43 Aligned_cols=197 Identities=17% Similarity=0.147 Sum_probs=105.4
Q ss_pred CCC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHHhhhHhHHHHHHHhhHHH------hhHHHHHHHHHhhhc
Q 002247 242 NLG-SDGSVEKLKNEIAVMMRQVELSELELLSLRKQV--AKESKRAQDQTRQIISLSSE------RDALTIECEQLRKQN 312 (947)
Q Consensus 242 ~L~-se~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi--~kEsKrgqdLs~Evs~Lk~E------RD~LK~E~EqLKs~~ 312 (947)
.+| +...-+.|-+-|.||..+-.++..||++|+--| .-+.-|---++-=.+-.+.| -+-|=.+|.-|+.-+
T Consensus 37 ~~p~sP~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~kek 116 (552)
T KOG2129|consen 37 HEPFSPSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEK 116 (552)
T ss_pred CCCCCCCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccc
Confidence 355 666789999999999877788888888876433 22222222222212222222 122333333333222
Q ss_pred c-------ccH-------HHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhhh--HHHHHHHhhHHHHHH
Q 002247 313 S-------IDI-------AEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSN--AELILAVKDLNEMLE 376 (947)
Q Consensus 313 k-------~~~-------~~~~~~lq~e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQESN--~ELvlavqDLEemLE 376 (947)
. .++ ..-...|+.+-.+..+..|..+|.--.|-+|.--.++=+-.-+.| --|.-.-=+||-+||
T Consensus 117 etla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlE 196 (552)
T KOG2129|consen 117 ETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLE 196 (552)
T ss_pred cccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHH
Confidence 1 111 111222444444666667777776556666655555544444444 346666668888888
Q ss_pred hhhhhhccc-hhhhhhhh-hh-----hhhHHH-----HHHHHhhcC-CchhhHHHHHHHHHHhhHHHHHHHhHHH
Q 002247 377 QKNMEISSL-SSKLEESK-LV-----REDQLA-----LEALAKERN-KDKEVDMLKQKIRDQGDEIQFFKKHAED 438 (947)
Q Consensus 377 qk~~EIs~l-s~~~~e~~-n~-----d~~q~~-----le~Lvk~~~-~~~E~~~L~qKI~dL~~Eie~ykke~E~ 438 (947)
|...-|.+- =..++... .. ..||+- ..++.+.++ .+|+...+.--|.-|-+|++-||++.-.
T Consensus 197 QEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 197 QEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666551 11111000 01 123332 223445544 4677888888888888888888766543
No 121
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.91 E-value=89 Score=39.74 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=85.2
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHH
Q 002247 425 QGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSE 504 (947)
Q Consensus 425 L~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~ 504 (947)
+..+++..+-+++.|++.+.....+++.++- +|.+.+.---.++.+.-+...+-..++.|+..+....+...-
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~-------qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~ 666 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKN-------QLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLET 666 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444555555555555555555544 444333222223444444455555566666666666555556
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHH--------HHHHHHHHhhhhhhhHHHH---
Q 002247 505 EYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIR--------AEEELRKTRWKNTVTAERL--- 573 (947)
Q Consensus 505 efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~--------aeeaLrk~r~~na~~~e~L--- 573 (947)
++-+--..++.|..+|.+|+.||++.-...+..+---... .+|-+|... -++-=.++.|.=|.+|++|
T Consensus 667 ~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~L-e~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAEC 745 (769)
T PF05911_consen 667 RLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCREL-EEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAEC 745 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHH-HHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHH
Confidence 6666666677777788888877776544333322221111 111111111 1112345678888888888
Q ss_pred HHHHHHHHHHhhhhhhh
Q 002247 574 QDEFRRLSVDMASKFDE 590 (947)
Q Consensus 574 Q~e~~~LS~qm~s~~~e 590 (947)
|+=+-.|+.|.-+.-.-
T Consensus 746 QeTI~sLGkQLksLa~~ 762 (769)
T PF05911_consen 746 QETIASLGKQLKSLATP 762 (769)
T ss_pred HHHHHHHHHHHHhcCCh
Confidence 77888888887665443
No 122
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.87 E-value=53 Score=37.08 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 002247 499 IKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFR 578 (947)
Q Consensus 499 LkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~ 578 (947)
|...+.+.++.-..|......+..|+ .+......+++++...+.+....+..|+..+.+.|.--.-.+.+|+..|.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~----~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQ----EELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 33334444444444444444444333 34445667778888999999999999999999999888999999999999
Q ss_pred HHHHH
Q 002247 579 RLSVD 583 (947)
Q Consensus 579 ~LS~q 583 (947)
.|-..
T Consensus 287 ~Le~~ 291 (325)
T PF08317_consen 287 ALEKL 291 (325)
T ss_pred HHHHH
Confidence 88643
No 123
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.39 E-value=65 Score=39.99 Aligned_cols=102 Identities=10% Similarity=0.089 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHH
Q 002247 417 MLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLE 496 (947)
Q Consensus 417 ~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE 496 (947)
...++|.++...+...+.++...+.+.+++......-.+ ...+.. -+.. -...-..|.+|..+...++
T Consensus 234 ~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~--~~~~~~----~~~~------~~~~~~~i~~L~~~l~~l~ 301 (754)
T TIGR01005 234 LATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGS--LDVLPE----VLSS------QLKLEDLIQRLRERQAELR 301 (754)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccchhh----hhcC------cccccHHHHHHHHHHHHHH
Confidence 345777777776666666666666655555444321100 000000 0000 0011267889999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 002247 497 DKIKQQSEEYSESLISINELECQVKELKRELDKQ 530 (947)
Q Consensus 497 ~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Q 530 (947)
.++.+...+|.+.--.|-.+++|+..|++.+...
T Consensus 302 ~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e 335 (754)
T TIGR01005 302 ATIADLSTTMLANHPRVVAAKSSLADLDAQIRSE 335 (754)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988877543
No 124
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.25 E-value=79 Score=38.40 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=31.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhH
Q 002247 730 LEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSL 783 (947)
Q Consensus 730 L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sl 783 (947)
...-+..+.+++..+...|+.-.-.=+..+..+......+..|..|.++|..+.
T Consensus 446 y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a 499 (569)
T PRK04778 446 YLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENA 499 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777777222223333355566666666666666665543
No 125
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.14 E-value=58 Score=37.50 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=50.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDID 539 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~ 539 (947)
+.|..|.+++..++.+|.+....|.+.--.|-.+++++..+...+.........-+.
T Consensus 254 ~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~ 310 (444)
T TIGR03017 254 PIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVG 310 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999887776655443
No 126
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.05 E-value=2.9 Score=39.77 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=38.8
Q ss_pred ceeeeeeec--cCCccccccceecchhhhhcccCC-----ccccccccc----CCCCCeeeeeeeec
Q 002247 83 KIYHFIVST--GSSKSGFLGEASIDFADFAAETEP-----LTLSLPLKF----ANSGAVLHVTIEKM 138 (947)
Q Consensus 83 ~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp-----~tVSLPLk~----cnsGtvLHVtIQ~L 138 (947)
+...|.|.- ..++..+||.+.|.+++......+ ....+||.+ ..++..|||++..|
T Consensus 67 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 67 HRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 344566552 335778999999999999876543 235667763 44677899988754
No 127
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=86.70 E-value=1.8 Score=40.16 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=38.3
Q ss_pred ceeeeeeec--cCCccccccceecchhhhhcccCCcccccccccCCCCCeeeeeee
Q 002247 83 KIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHVTIE 136 (947)
Q Consensus 83 ~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHVtIQ 136 (947)
....|-|.- ..++..++|.+.|++++... ..+..+.+||..+ .|.+ |+-|.
T Consensus 61 ~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~-~G~~-~~~~~ 113 (116)
T cd08376 61 QILEIEVWDKDTGKKDEFIGRCEIDLSALPR-EQTHSLELELEDG-EGSL-LLLLT 113 (116)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEEeHHHCCC-CCceEEEEEccCC-CcEE-EEEEE
Confidence 455566642 45678999999999999876 5678899999987 5666 66554
No 128
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.49 E-value=5.9 Score=40.26 Aligned_cols=93 Identities=26% Similarity=0.308 Sum_probs=75.6
Q ss_pred hhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhccc--chhHHHHhhHHHHHHHHHHHHHHHHhhHh-HHHHhhHHH
Q 002247 717 DMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLK--GENEMLIGNLQAEVENLKVQQNKLQNSLI-EEKLEKDNL 793 (947)
Q Consensus 717 e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~k--dekE~~i~~L~~E~e~Lk~q~~~Lk~sls-~~~~EkE~l 793 (947)
..-+..-+.++.+|..+++.++.++..+..+|..+.+.. ++....|..|..++..|......|+..-. -...+++++
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~ 150 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKL 150 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 344677788899999999999999999999999998855 78888999999999999999998887433 345567778
Q ss_pred HHHHHHHHHHHHhhHH
Q 002247 794 AKQVFQLKDELQKKKE 809 (947)
Q Consensus 794 ~kqv~qLk~eL~kkE~ 809 (947)
.+..-.+.+...++.-
T Consensus 151 ~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 151 EKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887777777776643
No 129
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=86.43 E-value=1.2 Score=41.69 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=39.3
Q ss_pred cceeeeeee-ccCCccccccceecchhhhhcccCCcccccccccCCCCCeeeeeeee
Q 002247 82 EKIYHFIVS-TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHVTIEK 137 (947)
Q Consensus 82 e~iykfvVs-~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHVtIQ~ 137 (947)
.....|.|- -+..+..+||.+.|+|++......-..-.+||.++..|+| |+++|.
T Consensus 53 ~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~~~~G~i-~~~~~~ 108 (111)
T cd04052 53 KSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRI-RISALW 108 (111)
T ss_pred CCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccceeEECCCCCCCEE-EEEEEE
Confidence 334455554 3444789999999999999765444567889998766665 988874
No 130
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.99 E-value=88 Score=37.73 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhh
Q 002247 596 MKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEA 675 (947)
Q Consensus 596 ~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~ 675 (947)
-.-+++...|..|+.-|++|.+.|. |+.+-...++-|-..|..=.+-+.+.-++++.-.+.---....
T Consensus 267 ~~i~~~i~~lk~~n~~l~e~i~ea~------------k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~k 334 (622)
T COG5185 267 HIINTDIANLKTQNDNLYEKIQEAM------------KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEK 334 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3445666777777788888877772 2222233333344444333333333333333222222223344
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhc
Q 002247 676 LSTEIHMLRTEIEKLRKEQYNLSEHG 701 (947)
Q Consensus 676 ~s~ei~~Lkaeie~L~~e~~~L~e~~ 701 (947)
++.||+.--.+|+-|+..++.|..+.
T Consensus 335 l~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455555555555554444444333
No 131
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=97 Score=37.95 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=47.8
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 002247 427 DEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEY 506 (947)
Q Consensus 427 ~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~ef 506 (947)
.||+.|++|+-.|..++.+|..+ |++ +++++ +-++++-|+.-.++.-+.+.+-.++--|..+..+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~---l~e---------ke~sl--~dlkehassLas~glk~ds~Lk~leIalEqkkEec 396 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAE---LTE---------KESSL--IDLKEHASSLASAGLKRDSKLKSLEIALEQKKEEC 396 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHH---------HHHHH--HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 37999999999999999999884 433 22223 33667777777777777777777766666665554
Q ss_pred hh
Q 002247 507 SE 508 (947)
Q Consensus 507 Se 508 (947)
+.
T Consensus 397 ~k 398 (654)
T KOG4809|consen 397 SK 398 (654)
T ss_pred HH
Confidence 43
No 132
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.46 E-value=26 Score=40.02 Aligned_cols=83 Identities=23% Similarity=0.326 Sum_probs=67.3
Q ss_pred hchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHhhhHHHHHHH
Q 002247 477 ECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQE----FEDDIDAVTHAKTEQEQRA 552 (947)
Q Consensus 477 EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~----fe~dl~a~~~~~~EqEqRa 552 (947)
|-+.....+..+..++++|+-+++-...+-.+-...=.+...++..|+.||+--.-+ +- |+|++--+|.=+-+|.
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv-DIDaLi~ENRyL~erl 205 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIV-DIDALIMENRYLKERL 205 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHHHHHHH
Confidence 344455666777888889999999999999999999999999999999999754433 33 8999999999999999
Q ss_pred HHHHHHHH
Q 002247 553 IRAEEELR 560 (947)
Q Consensus 553 i~aeeaLr 560 (947)
.++++-..
T Consensus 206 ~q~qeE~~ 213 (319)
T PF09789_consen 206 KQLQEEKE 213 (319)
T ss_pred HHHHHHHH
Confidence 88876544
No 133
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.39 E-value=54 Score=39.27 Aligned_cols=107 Identities=27% Similarity=0.436 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 002247 675 ALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSL 754 (947)
Q Consensus 675 ~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~ 754 (947)
.|-.=|..||..||.|-.+.++.+ -|+++++.++-.|..=....+..|..-+..
T Consensus 359 vfvDiinkLk~niEeLIedKY~vi--------------------------LEKnd~~k~lqnLqe~la~tqk~LqEsr~e 412 (527)
T PF15066_consen 359 VFVDIINKLKENIEELIEDKYRVI--------------------------LEKNDIEKTLQNLQEALANTQKHLQESRNE 412 (527)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHhh--------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344557788888888887555531 123344444444444444444445443332
Q ss_pred cchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhh
Q 002247 755 KGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRT 814 (947)
Q Consensus 755 kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ 814 (947)
| .+||.++.-+|+-|.-|...-..+-.+|.+--.|-+.+.+-|.+||+++..+
T Consensus 413 K-------etLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverL 465 (527)
T PF15066_consen 413 K-------ETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERL 465 (527)
T ss_pred H-------HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 2 4689999999999999999999999999999999999999999999877654
No 134
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=85.04 E-value=19 Score=35.98 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=21.6
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 002247 665 EHKSEAQKHEALSTEIHMLRTEIEKLRKEQY 695 (947)
Q Consensus 665 ~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~ 695 (947)
+...+-...+.++..+..|.+++++|.....
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~ 76 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVE 76 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3345566677888888888888888776333
No 135
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.95 E-value=3 Score=44.03 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhH
Q 002247 680 IHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENE 759 (947)
Q Consensus 680 i~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE 759 (947)
+.-|.+.+.+|..=.+.. .+.....+..+..+.....+...++++|+-|+..+..++.....++..|....
T Consensus 88 V~~l~~RL~kLL~lk~~~---------~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~ 158 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQ---------EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD 158 (190)
T ss_pred cHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666665522221 22222334456666666777888888888888888888888888888888888
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhHhHH
Q 002247 760 MLIGNLQAEVENLKVQQNKLQNSLIEE 786 (947)
Q Consensus 760 ~~i~~L~~E~e~Lk~q~~~Lk~sls~~ 786 (947)
..|..++++++.++..+.+.++.+...
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998888888877643
No 136
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=84.39 E-value=87 Score=36.31 Aligned_cols=269 Identities=22% Similarity=0.301 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 002247 519 QVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKA 598 (947)
Q Consensus 519 q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A 598 (947)
.|.....+|+........++++|...+. +.|.||..++.--+|+.+.|.-==.|....+ .+|.=|.-.
T Consensus 54 di~~wk~eL~~~l~~~~~Ei~~L~~~K~-------~le~aL~~~~~pl~i~~ecL~~R~~R~~~dl--v~D~ve~eL--- 121 (384)
T PF03148_consen 54 DIRFWKNELERELEELDEEIDLLEEEKR-------RLEKALEALRKPLSIAQECLSLREKRPGIDL--VHDEVEKEL--- 121 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcHHHHHHHHHHHhCCCCccc--CCCcHHHHH---
Confidence 3477778888888888888888877664 3455788889999999999985555555544 366655544
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhhhhh--------h
Q 002247 599 MTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDK--QIQKMYLELDHSSSQLIDEHK--------S 668 (947)
Q Consensus 599 ~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k--~ie~m~~el~~kSkqle~~~~--------~ 668 (947)
+.|+.-++.-++.|+..++.|.++|+.+++ =-..|..-+..|.. .|+.....|...|.-+..... .
T Consensus 122 ~kE~~li~~~~~lL~~~l~~~~eQl~~lr~----ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~ 197 (384)
T PF03148_consen 122 LKEVELIENIKRLLQRTLEQAEEQLRLLRA----ARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSS 197 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCC
Confidence 679999999999999999999999999554 33445555555544 666777777666655532111 0
Q ss_pred HHHHhhhhHHHH----HHHHHHHHHHHHhhhhhhhhc--------cccCCCCCccccchhhhhHhhhhhHHHHHHHHHHh
Q 002247 669 EAQKHEALSTEI----HMLRTEIEKLRKEQYNLSEHG--------KRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFAS 736 (947)
Q Consensus 669 ~~~~~~~~s~ei----~~Lkaeie~L~~e~~~L~e~~--------~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~ 736 (947)
.-+-...|+.+. +-.+..-..|+..++.+..++ -..+ ..+...+.++... +++|+-....
T Consensus 198 tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn-~al~~Ri~et~~a-------k~~Le~ql~~ 269 (384)
T PF03148_consen 198 TPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVN-AALRKRIHETQEA-------KNELEWQLKK 269 (384)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 112233344332 122222333444444433333 1122 1222222233222 2333333333
Q ss_pred HHHHHHHHHHHHHhhhcccchhH------------------------HHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHH
Q 002247 737 AKQEAAKAHEELISMRSLKGENE------------------------MLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDN 792 (947)
Q Consensus 737 lk~Ea~~~~~eL~~~k~~kdekE------------------------~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~ 792 (947)
..+|+.....++..++..-.+++ ...-.|-.||..|+.-...|...|.+.+...-.
T Consensus 270 ~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~ 349 (384)
T PF03148_consen 270 TLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQK 349 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333222222 334457788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 002247 793 LAKQVFQLKDELQKKKEEI 811 (947)
Q Consensus 793 l~kqv~qLk~eL~kkE~~~ 811 (947)
|.....+|+.||.-|...+
T Consensus 350 L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 350 LERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888754
No 137
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.24 E-value=28 Score=34.54 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHH
Q 002247 732 KKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQ 776 (947)
Q Consensus 732 ~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~ 776 (947)
..+..|++++..+....+++--+=+||.+.+.-|+.+|..+|.-|
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444444444444444444444333
No 138
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.87 E-value=47 Score=32.82 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=12.8
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHH
Q 002247 478 CIESLATIKELESQSERLEDKIKQQSE 504 (947)
Q Consensus 478 cSs~~~~I~eLe~q~e~LE~eLkeQ~~ 504 (947)
|+.....|..+..++..+..++.....
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444333333
No 139
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.77 E-value=84 Score=35.61 Aligned_cols=179 Identities=22% Similarity=0.272 Sum_probs=95.9
Q ss_pred HHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhh---hhhhhhchhhhHhHHHHHHHHHHHH---H
Q 002247 424 DQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQE---SMKSRECIESLATIKELESQSERLE---D 497 (947)
Q Consensus 424 dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~---~k~q~EcSs~~~~I~eLe~q~e~LE---~ 497 (947)
.|..+++-++-+++-|..-.+-|++-|+.|+.+ +++.- -++. ++.-.|-++.-..|.+...+-..|. +
T Consensus 34 iL~QdLEkfe~Ekd~~a~~aETLeln~ealere-~eLla-----a~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~e 107 (389)
T KOG4687|consen 34 ILGQDLEKFENEKDGLAARAETLELNLEALERE-LELLA-----ACGCDAKIEFGTERQDLAADIEETKEENLKLRTDRE 107 (389)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh-hHHHH-----hcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHH
Confidence 344566666677777777777777777777652 11110 0111 2222233444444444433322222 2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 002247 498 KIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEF 577 (947)
Q Consensus 498 eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~ 577 (947)
.|..|.-+.-.++.+.-+.++ .|+...-++-..|.--. .-|---|+-|-+.--+-|.||.-.
T Consensus 108 aL~dq~adLhgD~elfReTeA--------------q~ese~~a~aseNaarn----eeelqwrrdeanfic~~EgLkak~ 169 (389)
T KOG4687|consen 108 ALLDQKADLHGDCELFRETEA--------------QFESEKMAGASENAARN----EEELQWRRDEANFICAHEGLKAKC 169 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHH--------------HHHHHHhcccccccccc----hHHHHhhHHHHHHHHHHHHHHHHh
Confidence 222222223333333333333 34444445544432111 111234556667777889999999
Q ss_pred HHHHHHhhhhhhhhHHHHHH--HHH------------------------HHHHHHhhHHHHHHHHHHhHHHHhhh
Q 002247 578 RRLSVDMASKFDENEKLAMK--AMT------------------------EANEQRMQKAHLEEMLQKANDELSLI 626 (947)
Q Consensus 578 ~~LS~qm~s~~~enEk~~~~--A~~------------------------Ea~eLR~qk~~LEe~Lqk~neeL~~~ 626 (947)
.-|.+.+-++.++.|-++|. |+. ..+-|=+.|+-|-+.|..+-+||.+|
T Consensus 170 a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhaklkiadeElEli 244 (389)
T KOG4687|consen 170 AGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAKLKIADEELELI 244 (389)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHHhcccHHHHHHH
Confidence 99999999999999998874 211 12223345566667777777777763
No 140
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.66 E-value=1.7e+02 Score=39.17 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=35.9
Q ss_pred hhhhHhhhhhHHHHHHHH-----HHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHH
Q 002247 716 TDMLIQKWNRERDDLEKK-----FASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQN 777 (947)
Q Consensus 716 ~e~~l~~~~~er~~L~~~-----ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~ 777 (947)
++..++.-..|+..+..+ +++.+.++-++.++...+.+.+..+....+-+.+.+..++.|..
T Consensus 1013 l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1013 LERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444333 46666777777777777777777666655555555555555544
No 141
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.58 E-value=26 Score=39.52 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhHHHHhhh
Q 002247 796 QVFQLKDELQKKKEEINRT 814 (947)
Q Consensus 796 qv~qLk~eL~kkE~~~~~~ 814 (947)
.|.+|+..+..-+. ++.|
T Consensus 277 Ev~~Lk~~~~~Le~-~~gw 294 (325)
T PF08317_consen 277 EVKRLKAKVDALEK-LTGW 294 (325)
T ss_pred HHHHHHHHHHHHHH-HHCc
Confidence 35555555555555 4444
No 142
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.91 E-value=21 Score=35.01 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHH
Q 002247 725 RERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDEL 804 (947)
Q Consensus 725 ~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL 804 (947)
.-+.++...++.|..+.+..+.+-..+...||.++..+.+|+.+-.++--.+++|.-.+++-....+..+-.-.+|++.|
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~ 88 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRL 88 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999987777776555556778887
Q ss_pred HhhHHHHhhhh
Q 002247 805 QKKKEEINRTG 815 (947)
Q Consensus 805 ~kkE~~~~~~e 815 (947)
.|-+-..+..|
T Consensus 89 ~k~~~dka~le 99 (107)
T PF09304_consen 89 LKAQKDKAILE 99 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhhhHHH
Confidence 77665444433
No 143
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=82.50 E-value=3.8 Score=37.93 Aligned_cols=52 Identities=27% Similarity=0.401 Sum_probs=38.9
Q ss_pred ceeeeeee-ccCCccccccceecchhhhhcccCCcccccccccCCCCCeeeeeee
Q 002247 83 KIYHFIVS-TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHVTIE 136 (947)
Q Consensus 83 ~iykfvVs-~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHVtIQ 136 (947)
....|.|- -+..+..++|.+.|++++.... .....-+||..+.+|-| |+.+|
T Consensus 68 ~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~G~~-~~~~~ 120 (121)
T cd08391 68 QELEIELFDEDPDKDDFLGRLSIDLGSVEKK-GFIDEWLPLEDVKSGRL-HLKLE 120 (121)
T ss_pred CEEEEEEEecCCCCCCcEEEEEEEHHHhccc-CccceEEECcCCCCceE-EEEEe
Confidence 34555554 2233888999999999999864 34678899999988877 88776
No 144
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.33 E-value=1.3e+02 Score=36.93 Aligned_cols=174 Identities=24% Similarity=0.265 Sum_probs=88.5
Q ss_pred CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhcc--ccHHHHhhh
Q 002247 245 SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNS--IDIAEIERR 322 (947)
Q Consensus 245 se~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k--~~~~~~~~~ 322 (947)
++.+++.||.||.-|.+..+.--.+.-.-..==..=.....+|...+-.|..|-|.+|+|+++++-... ...++..++
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~ 85 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVAR 85 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677899999999999776543332211000000000122345556666777788888888888875433 111211111
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHH
Q 002247 323 LQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLAL 402 (947)
Q Consensus 323 lq~e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~l 402 (947)
...+.+ ..++. |=. -|+ ..++.-+-+|+.-|-|.+.+..+.. ...
T Consensus 86 ~g~e~E-esLLq----ESa-akE----------------~~yl~kI~eleneLKq~r~el~~~q-------------~E~ 130 (772)
T KOG0999|consen 86 DGEERE-ESLLQ----ESA-AKE----------------EYYLQKILELENELKQLRQELTNVQ-------------EEN 130 (772)
T ss_pred cchhhH-HHHHH----HHH-HhH----------------HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Confidence 111111 11111 110 111 1245555677777777776666532 223
Q ss_pred HHHHhhcCCchhhH-HHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002247 403 EALAKERNKDKEVD-MLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCL 460 (947)
Q Consensus 403 e~Lvk~~~~~~E~~-~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dl 460 (947)
+.+.+.+.+.++.+ +++-.=..|-+||-.|| .|| .-|-.||.+|..||+.|
T Consensus 131 erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K-fRE------~RllseYSELEEENIsL 182 (772)
T KOG0999|consen 131 ERLEKVHSDLKESNAAVEDQRRRLRDELKEYK-FRE------ARLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHhcchH
Confidence 44555555433322 23333344556666664 122 23556999999999865
No 145
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=82.22 E-value=1.4 Score=42.50 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=41.6
Q ss_pred ccchhhheecccCCccccccceeeeeee--ccCCccccccceecchhhhhc-ccCCcccccccc
Q 002247 63 NPIYVTVKLIREPKTGYIKEKIYHFIVS--TGSSKSGFLGEASIDFADFAA-ETEPLTLSLPLK 123 (947)
Q Consensus 63 dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GSSkSgiLGEasINlAdYa~-a~kp~tVSLPLk 123 (947)
+|+|.-...........+.+.-.+|.|. -+.++..+||++.|.|++.-- .-.++++.|||+
T Consensus 64 nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 64 NPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 6766544333333334455555677664 356688999999999998833 367899999986
No 146
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.04 E-value=1.3e+02 Score=36.61 Aligned_cols=317 Identities=18% Similarity=0.246 Sum_probs=158.1
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH
Q 002247 478 CIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEE 557 (947)
Q Consensus 478 cSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aee 557 (947)
....-..|..++.++..+.++|+.....-......|..|...+..+.+.+-.+.-.|-..++.+...-..-|..-...++
T Consensus 103 i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~ 182 (560)
T PF06160_consen 103 IKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEE 182 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788999999999999999888889999999999999999999999888877777766554444444332221
Q ss_pred HHHHHhhhhhhhH----HHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHHHHHH----Hhh-----HHHHHHHHHHhHH
Q 002247 558 ELRKTRWKNTVTA----ERLQDEFRRLS---VDMASKFDENEKLAMKAMTEANEQ----RMQ-----KAHLEEMLQKAND 621 (947)
Q Consensus 558 aLrk~r~~na~~~----e~LQ~e~~~LS---~qm~s~~~enEk~~~~A~~Ea~eL----R~q-----k~~LEe~Lqk~ne 621 (947)
.-. .-+-+.| ..++.+...|. ..+-+.+.+=.+..-..+.|...- ..+ --.+++.++...+
T Consensus 183 lt~---~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~ 259 (560)
T PF06160_consen 183 LTE---NGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEE 259 (560)
T ss_pred HHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence 111 1111111 12222222221 112222222222222222222110 000 0012222333333
Q ss_pred HHhhhhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 622 ELSLIKDQNG-VKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEH 700 (947)
Q Consensus 622 eL~~~~~~~e-~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~ 700 (947)
.|....+.-. ..+.+....++.-...|++|..-++ ++.. .++.=......+..-|.-++..+..|..|.+.+...
T Consensus 260 ~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le---~E~~-Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 260 QLEEALALLKNLELDEVEEENEEIEERIDQLYDILE---KEVE-AKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3222211110 1222222233333333333333221 1111 111122333444455555555555666555555555
Q ss_pred ccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHH
Q 002247 701 GKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQ 780 (947)
Q Consensus 701 ~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk 780 (947)
+.=++ ........+.+.|..+.+....+...+..-..-=-.....+..+...+..+..++..+.
T Consensus 336 Y~L~~----------------~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~ 399 (560)
T PF06160_consen 336 YTLNH----------------NELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEIN 399 (560)
T ss_pred cCCCc----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 41111 12223355667777777777777777777666666666677777777777777777777
Q ss_pred hhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCCC
Q 002247 781 NSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGP 824 (947)
Q Consensus 781 ~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~gr 824 (947)
+.|. +|++.-.+-+..|.+-...++.+-.++..++=+
T Consensus 400 ~~l~-------~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLP 436 (560)
T PF06160_consen 400 ESLQ-------SLRKDEKEAREKLQKLKQKLREIKRRLEKSNLP 436 (560)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7665 223333333333333333444555555555443
No 147
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.93 E-value=21 Score=39.77 Aligned_cols=90 Identities=21% Similarity=0.378 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHH
Q 002247 415 VDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSER 494 (947)
Q Consensus 415 ~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~ 494 (947)
+..+.+.|..+...++....|-..|+.||+.-..+++-..+ +|.- +|. --++.+.|.+ .
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qK-------RL~s--Lq~--------vRPAfmdEyE----k 229 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQK-------RLQS--LQS--------VRPAFMDEYE----K 229 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH--HHh--------cChHHHHHHH----H
Confidence 34455555555556666667888899999988888887777 5554 444 3367777776 8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002247 495 LEDKIKQQSEEYSESLISINELECQVKELKR 525 (947)
Q Consensus 495 LE~eLkeQ~~efSe~l~tI~~Le~q~~sLek 525 (947)
||.+|+.+-..|......+..||.|+...+.
T Consensus 230 lE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 230 LEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999887764
No 148
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.67 E-value=51 Score=35.59 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHH
Q 002247 512 SINELECQVKELKRELD-------KQAQEFEDDIDAV 541 (947)
Q Consensus 512 tI~~Le~q~~sLekELe-------~Qaq~fe~dl~a~ 541 (947)
++..|..++..|..||. .|+..|+.+...-
T Consensus 132 ~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35555666666666554 5666666555443
No 149
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.05 E-value=45 Score=35.76 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 002247 673 HEALSTEIHMLRTEIEKLRKEQYNLSE 699 (947)
Q Consensus 673 ~~~~s~ei~~Lkaeie~L~~e~~~L~e 699 (947)
...+..+|..++++.+.|...++.+++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777665
No 150
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.85 E-value=1.6e+02 Score=36.85 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=54.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHH---------HHHHHHHhhhhhhhhHHHHHHHHHHH-----
Q 002247 539 DAVTHAKTEQEQRAIRAEEELRKTRWKN--TVTAERLQDE---------FRRLSVDMASKFDENEKLAMKAMTEA----- 602 (947)
Q Consensus 539 ~a~~~~~~EqEqRai~aeeaLrk~r~~n--a~~~e~LQ~e---------~~~LS~qm~s~~~enEk~~~~A~~Ea----- 602 (947)
.+|.+++.|+|.+.--+|.-+-.++-.+ .+.-||||-| +..|-.|++-+-++-+++..+++.-+
T Consensus 191 talEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e 270 (861)
T KOG1899|consen 191 TALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGE 270 (861)
T ss_pred HHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhccc
Confidence 3444444555555555554444444221 2334555543 44556666666666666555544321
Q ss_pred -HHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHH--HHHHH
Q 002247 603 -NEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQ--KDKQI 648 (947)
Q Consensus 603 -~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~--K~k~i 648 (947)
--+|-+ -|.+|=+.|=....|-+-++++|.+-++. |.++|
T Consensus 271 ~~~~rd~------~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~i 313 (861)
T KOG1899|consen 271 HKSLRDN------TLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQI 313 (861)
T ss_pred chhhHHH------HHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhh
Confidence 223333 45666666666666666677777776665 45555
No 151
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.61 E-value=40 Score=38.24 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhh
Q 002247 346 VSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKN 379 (947)
Q Consensus 346 ~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~ 379 (947)
-+..|-+.|+|.=+.|-+|+.-|+.|-..|++.+
T Consensus 213 G~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 213 GDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999998765
No 152
>PF13166 AAA_13: AAA domain
Probab=79.29 E-value=1.6e+02 Score=36.02 Aligned_cols=105 Identities=21% Similarity=0.303 Sum_probs=61.3
Q ss_pred hhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHH
Q 002247 715 ETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLA 794 (947)
Q Consensus 715 e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~ 794 (947)
.....+..-...+.+.+..+..++++...+...+...-. .+....+..+..++..+...+..+...+..-..+..++.
T Consensus 367 ~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 444 (712)
T PF13166_consen 367 ELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLI--AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIE 444 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555544433111 122233334555666666667777777777777777888
Q ss_pred HHHHHHHHHHHhhHHHHhhhhhhcccc
Q 002247 795 KQVFQLKDELQKKKEEINRTGKGLKKY 821 (947)
Q Consensus 795 kqv~qLk~eL~kkE~~~~~~ek~lk~~ 821 (947)
+++..|+..+..-+.....+-+.|+.-
T Consensus 445 ~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 445 KEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 888888888776565566666666666
No 153
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.01 E-value=54 Score=40.04 Aligned_cols=137 Identities=18% Similarity=0.283 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQS 492 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~ 492 (947)
..+..|+.++.+.+.+|..++.+|+.++.--.-|+.-|++-+. .|+
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e-------------~qe--------------------- 633 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKE-------------KQE--------------------- 633 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hHH---------------------
Confidence 3567888899999999999999999998888888888887643 334
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHH-HhhhhhhhHH
Q 002247 493 ERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRK-TRWKNTVTAE 571 (947)
Q Consensus 493 e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk-~r~~na~~~e 571 (947)
.|++.|+....+|-..+.-..-.|...++=-+-+..+.+.+.+.|++++.-...|.+-.-+.-+||.| +|-..+.---
T Consensus 634 -~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~ 712 (741)
T KOG4460|consen 634 -DLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRK 712 (741)
T ss_pred -HHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHH
Confidence 34566666666676666666666666555557778899999999999988888888887777778765 5555555556
Q ss_pred HHHHHHHHHHHHh
Q 002247 572 RLQDEFRRLSVDM 584 (947)
Q Consensus 572 ~LQ~e~~~LS~qm 584 (947)
.+|.=+..|+...
T Consensus 713 ~iqsiL~~L~~~i 725 (741)
T KOG4460|consen 713 CIQSILKELGEHI 725 (741)
T ss_pred HHHHHHHHHHHHH
Confidence 6676666665543
No 154
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.89 E-value=14 Score=33.27 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHH
Q 002247 247 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQL 308 (947)
Q Consensus 247 ~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqL 308 (947)
..|.-|+.-+..+.|+..+...++-+|+++=.-=.++-++.-.++..|+.|-++|+.|++.+
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999999998655444444445555555555555555554443
No 155
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.68 E-value=16 Score=38.15 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=53.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHH
Q 002247 721 QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQL 800 (947)
Q Consensus 721 ~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qL 800 (947)
+....+..+....|+.+..++..+...+..+...=.++...+..|+-|+.+|..|++.+-..+..-+.|...|=+-..+.
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555555555555555555678899999999999999999999999998888888776666554
Q ss_pred HH
Q 002247 801 KD 802 (947)
Q Consensus 801 k~ 802 (947)
++
T Consensus 185 k~ 186 (194)
T PF08614_consen 185 KA 186 (194)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 156
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.54 E-value=5 Score=38.10 Aligned_cols=61 Identities=16% Similarity=0.339 Sum_probs=43.3
Q ss_pred cceeeeeee--ccCCccccccceecchhhhhcccCCcccccccccCC---CCCeeeeeeeeccCCCC
Q 002247 82 EKIYHFIVS--TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKFAN---SGAVLHVTIEKMDGATD 143 (947)
Q Consensus 82 e~iykfvVs--~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cn---sGtvLHVtIQ~L~~~s~ 143 (947)
.....|.|. -+.++..+||.+.|++++... .....+.+||...+ .|+-|||.++...+..+
T Consensus 56 ~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 56 DESLEIVVKDYEKVGRNRLIGSATVSLQDLVS-EGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred CCEEEEEEEECCCCCCCceEEEEEEEhhHccc-CCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCc
Confidence 344555554 244567899999999999886 45677889996433 46789999987766443
No 157
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=78.38 E-value=4.9 Score=37.82 Aligned_cols=104 Identities=14% Similarity=0.250 Sum_probs=60.8
Q ss_pred eeeccccCccc---ceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee--ccCCc
Q 002247 21 QCNQVPKLKKS---AVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--TGSSK 95 (947)
Q Consensus 21 hAtQVP~~gwd---kL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GSSk 95 (947)
.|..+|...+. --||-|.- .|+...||. ..-.+-++.|...+.=.+ .++ ....+|-|. -..++
T Consensus 8 ~a~~L~~~d~~g~~Dpyv~v~~--~~~~~~kT~-~~~~t~nP~Wne~f~f~v---~~~------~~~l~~~v~D~d~~~~ 75 (121)
T cd04042 8 EGRNLAARDRGGTSDPYVKFKY--GGKTVYKSK-TIYKNLNPVWDEKFTLPI---EDV------TQPLYIKVFDYDRGLT 75 (121)
T ss_pred EeeCCCCcCCCCCCCCeEEEEE--CCEEEEEee-eccCCCCCccceeEEEEe---cCC------CCeEEEEEEeCCCCCC
Confidence 46666654322 22333332 244455443 334455666665443221 221 245666665 24457
Q ss_pred cccccceecchhhhhcccCCcccccccccCCC---CCeeeeeeee
Q 002247 96 SGFLGEASIDFADFAAETEPLTLSLPLKFANS---GAVLHVTIEK 137 (947)
Q Consensus 96 SgiLGEasINlAdYa~a~kp~tVSLPLk~cns---GtvLHVtIQ~ 137 (947)
..++|.+.|++++... ..+..+.+||.+-+. ...|||.+.+
T Consensus 76 ~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~~~~~G~l~l~~~~ 119 (121)
T cd04042 76 DDFMGSAFVDLSTLEL-NKPTEVKLKLEDPNSDEDLGYISLVVTL 119 (121)
T ss_pred CcceEEEEEEHHHcCC-CCCeEEEEECCCCCCccCceEEEEEEEE
Confidence 8899999999999875 677889999975443 4567887754
No 158
>PRK12704 phosphodiesterase; Provisional
Probab=78.36 E-value=1.2e+02 Score=36.87 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=37.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 631 GVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEH 700 (947)
Q Consensus 631 e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~ 700 (947)
+..+.+.-..++.|...+++-...|+.+.++|.. .++.......+++.++.+++.+..+...-++.
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~----re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~ 146 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEK----KEKELEQKQQELEKKEEELEELIEEQLQELER 146 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666666666666666662 22334445555666666666666555443333
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.92 E-value=32 Score=37.50 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=12.5
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhh
Q 002247 758 NEMLIGNLQAEVENLKVQQNKLQNS 782 (947)
Q Consensus 758 kE~~i~~L~~E~e~Lk~q~~~Lk~s 782 (947)
....|..+..|+.-||.+.|.+...
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555444
No 160
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.89 E-value=1.5e+02 Score=34.83 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHH
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSE 493 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e 493 (947)
....+.+.|.++...+...+.++-.++.++..|......... .+. . ..-..+..+..++.
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~---~~~------------~-----~~~~~~~~l~~~l~ 257 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEP---VLL------------A-----GSSVANSELDGRIE 257 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CcC------------c-----ccccCCCchHHHHH
Confidence 344566777777776666666666666666655543221110 000 0 00123456778888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002247 494 RLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQ 532 (947)
Q Consensus 494 ~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq 532 (947)
.++.++.....+|.+.--.|..+..++..++..+.....
T Consensus 258 ~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~ 296 (498)
T TIGR03007 258 ALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGS 296 (498)
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcc
Confidence 888888888999999999999999999998888766543
No 161
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.63 E-value=1.7e+02 Score=35.39 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=60.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh
Q 002247 505 EYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDM 584 (947)
Q Consensus 505 efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm 584 (947)
.|.+....+......++.+-.++......++.|=+.+.. -+.|.. .+++..-+|..+.+.+-+....+..++
T Consensus 267 ~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~----~l~~LkrKyg~s~e~l~~~~~~l~~eL 338 (563)
T TIGR00634 267 SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLA----QIKRLKRKYGASVEEVLEYAEKIKEEL 338 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 445555556666777788888888877777766665544 233332 344444555567777777777766666
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 002247 585 ASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSL 625 (947)
Q Consensus 585 ~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~ 625 (947)
..--...+ +..+|..+...+++.+.++-.+|..
T Consensus 339 ~~l~~~~~--------~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 339 DQLDDSDE--------SLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55322222 3344555555555555555444444
No 162
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=77.15 E-value=3.3 Score=40.29 Aligned_cols=72 Identities=19% Similarity=0.350 Sum_probs=50.4
Q ss_pred EEEeeeCCCC-CccccccccccccCccccCccchhhh-eecccCCccccccceeeeeee--ccCCccccccceecchhhh
Q 002247 34 MISLVPDDVG-KPTFKLEKVPVQNGTCLWENPIYVTV-KLIREPKTGYIKEKIYHFIVS--TGSSKSGFLGEASIDFADF 109 (947)
Q Consensus 34 ~vSiVp~DtG-K~TaKs~KA~VrnG~C~W~dpIyEtv-kl~qD~~s~~~~e~iykfvVs--~GSSkSgiLGEasINlAdY 109 (947)
=|+++|.... +... |+.|..++ .||+|.=+ -| +....++.++...|-|. .+.++..+||++.|.|+++
T Consensus 40 Kv~Llp~~~~~~~~~---kT~v~~~t---~nPvfnE~F~f--~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 40 RVALLPCSSSTSCLF---RTKALEDQ---DKPVFNEVFRV--PISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred EEEEccCCCCCCceE---EcCccCCC---CCCccccEEEE--ECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 3567787653 2233 34466666 57888544 33 57778888999999887 4567889999999999999
Q ss_pred hccc
Q 002247 110 AAET 113 (947)
Q Consensus 110 a~a~ 113 (947)
-...
T Consensus 112 ~~~~ 115 (124)
T cd08680 112 ESSE 115 (124)
T ss_pred cCCC
Confidence 4433
No 163
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.91 E-value=65 Score=36.09 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhH
Q 002247 647 QIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRE 726 (947)
Q Consensus 647 ~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~e 726 (947)
.-++|..|++.--..+++|.-+-.++..+|-.+.-.++|--+.|.+-+-.|--.+ +.+..+-+-+...+.++...
T Consensus 67 ~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaN-----DdLErakRati~sleDfeqr 141 (333)
T KOG1853|consen 67 RNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAN-----DDLERAKRATIYSLEDFEQR 141 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cHHHHhhhhhhhhHHHHHHH
Confidence 3455666766656666666666666666666666666665555555444331111 12222344566677777777
Q ss_pred HHHHHHHHHhHHHHH
Q 002247 727 RDDLEKKFASAKQEA 741 (947)
Q Consensus 727 r~~L~~~ia~lk~Ea 741 (947)
.++-.+.+|.|.-|.
T Consensus 142 LnqAIErnAfLESEL 156 (333)
T KOG1853|consen 142 LNQAIERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777776665544
No 164
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=76.80 E-value=6.7 Score=36.59 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=45.6
Q ss_pred eeeeeccccCc-ccc-----eEEEeeeCCCCCccccccccccccC--ccccCccchhhheecccCCccccccceeeeeee
Q 002247 19 QFQCNQVPKLK-KSA-----VMISLVPDDVGKPTFKLEKVPVQNG--TCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS 90 (947)
Q Consensus 19 qFhAtQVP~~g-wdk-----L~vSiVp~DtGK~TaKs~KA~VrnG--~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs 90 (947)
-++|..+|... +.. .-|.++|...+....|| .|..+ +..|..++.=. ..-..+..+...|.|.
T Consensus 20 v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT---~v~~~t~~P~wne~f~f~------i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 20 IKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKT---SVKKNTTNPVFNETLKYH------ISKSQLETRTLQLSVW 90 (123)
T ss_pred EEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeec---cccCCCCCCcccceEEEe------CCHHHhCCCEEEEEEE
Confidence 56777787543 222 33455666543333333 23333 44455443211 1122334556677666
Q ss_pred c--cCCccccccceecchhhhh
Q 002247 91 T--GSSKSGFLGEASIDFADFA 110 (947)
Q Consensus 91 ~--GSSkSgiLGEasINlAdYa 110 (947)
- +.++..++|++.|+++++.
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred eCCCCcCCceeeEEEEeccccc
Confidence 2 3567889999999999984
No 165
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=76.65 E-value=5 Score=38.41 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=41.8
Q ss_pred ccceeeeeeecc--CCccccccceecchhhhhcc-cCCcccccccccCCCCCeeeeeeeecc
Q 002247 81 KEKIYHFIVSTG--SSKSGFLGEASIDFADFAAE-TEPLTLSLPLKFANSGAVLHVTIEKMD 139 (947)
Q Consensus 81 ~e~iykfvVs~G--SSkSgiLGEasINlAdYa~a-~kp~tVSLPLk~cnsGtvLHVtIQ~L~ 139 (947)
+.+...|.|.-. ..+..++|.+.|.|+++... ......-+||. ..|.| ||.|++-+
T Consensus 72 ~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l-~l~~~~~~ 130 (132)
T cd04014 72 NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKL-HVKIELKG 130 (132)
T ss_pred CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEE-EEEEEEec
Confidence 356778877632 24668999999999999985 56678899998 34655 98887644
No 166
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.30 E-value=1.3e+02 Score=34.28 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHH----HHHHHHHHHHHHHhhHHHHhhh
Q 002247 760 MLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDN----LAKQVFQLKDELQKKKEEINRT 814 (947)
Q Consensus 760 ~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~----l~kqv~qLk~eL~kkE~~~~~~ 814 (947)
.-+..+...++....++.++...+.+.+.-.+. =.+.|.+|+..+..-+. ++.+
T Consensus 232 ~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~-l~g~ 289 (312)
T smart00787 232 EELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS-LTGW 289 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HhCC
Confidence 333444444444444444444444433332221 12345555555555555 4444
No 167
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=76.20 E-value=44 Score=39.83 Aligned_cols=164 Identities=21% Similarity=0.279 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhH---------------hHHHHHHHhhHHHhhHHHHHHHHHhhhc
Q 002247 248 SVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRA---------------QDQTRQIISLSSERDALTIECEQLRKQN 312 (947)
Q Consensus 248 ~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrg---------------qdLs~Evs~Lk~ERD~LK~E~EqLKs~~ 312 (947)
=+++||.++-+-.+.+++.++||.. -|.|+.|.+-. .||..--..|-+=......-|+.+|.--
T Consensus 296 LteeLR~dle~~r~~aek~~~EL~~-Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaA 374 (488)
T PF06548_consen 296 LTEELRVDLESSRSLAEKLEMELDS-EKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAA 374 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999874 55677776643 3444445566666677888888888532
Q ss_pred c---c--cHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhh---hHHHHHHHhhHHHHH--Hhhhhhh
Q 002247 313 S---I--DIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDS---NAELILAVKDLNEML--EQKNMEI 382 (947)
Q Consensus 313 k---~--~~~~~~~~lq~e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQES---N~ELvlavqDLEemL--Eqk~~EI 382 (947)
- . .+.+-.+.+-.+.. .+--|=..|-.|.|+=|.+|+.||.-|=|+ -=||+.-+++-|+-. .+++.-
T Consensus 375 akAg~kG~~~rF~~slaaEiS--alr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~- 451 (488)
T PF06548_consen 375 AKAGVKGAESRFINSLAAEIS--ALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAM- 451 (488)
T ss_pred HHhccccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence 2 1 22333444555554 222345778899999999999999999886 567777777766542 232210
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCchhhHHHHHHHHH
Q 002247 383 SSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRD 424 (947)
Q Consensus 383 s~ls~~~~e~~n~d~~q~~le~Lvk~~~~~~E~~~L~qKI~d 424 (947)
..+-+|...++. ++.|-+.|. .|+..|++-+.+
T Consensus 452 ------~~eqe~ek~~kq-iekLK~kh~--~Ei~t~kq~lae 484 (488)
T PF06548_consen 452 ------DAEQENEKAKKQ-IEKLKRKHK--MEISTMKQYLAE 484 (488)
T ss_pred ------HHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHhh
Confidence 011112122222 456666665 688888887654
No 168
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=76.19 E-value=5.7 Score=37.80 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=36.2
Q ss_pred cceeeeeee-cc-CC-ccccccceecchhhhhcccCCcccccccccC-----CCCCeeeeeee
Q 002247 82 EKIYHFIVS-TG-SS-KSGFLGEASIDFADFAAETEPLTLSLPLKFA-----NSGAVLHVTIE 136 (947)
Q Consensus 82 e~iykfvVs-~G-SS-kSgiLGEasINlAdYa~a~kp~tVSLPLk~c-----nsGtvLHVtIQ 136 (947)
.....|.|- -+ .+ +..+||++.|.++++..-..+.+.-+||..= .+| -|||+|+
T Consensus 63 ~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G-~l~l~~~ 124 (127)
T cd04022 63 NLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRG-EIGLKVY 124 (127)
T ss_pred CCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccE-EEEEEEE
Confidence 344555554 33 33 7899999999999998434555667787752 245 7777776
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.10 E-value=30 Score=39.14 Aligned_cols=86 Identities=26% Similarity=0.362 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHH-------HHHHHhhHhHHHHhhHHHHHH
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQ-------QNKLQNSLIEEKLEKDNLAKQ 796 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q-------~~~Lk~sls~~~~EkE~l~kq 796 (947)
..++..+..++..++.|-..+.++|..+.....+.+..+..|+.+...|..+ ++.+..-+..-..+.+.+..|
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777777777777777777766666544 455555555555666677777
Q ss_pred HHHHHHHHHhhHH
Q 002247 797 VFQLKDELQKKKE 809 (947)
Q Consensus 797 v~qLk~eL~kkE~ 809 (947)
+......|.+-..
T Consensus 122 ~~~~~~~L~~L~k 134 (314)
T PF04111_consen 122 YEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHh
Confidence 7777776666554
No 170
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=76.02 E-value=1.3e+02 Score=34.04 Aligned_cols=96 Identities=16% Similarity=0.288 Sum_probs=68.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002247 430 QFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSES 509 (947)
Q Consensus 430 e~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~ 509 (947)
+-..++.+.++.++...+.....++..|-.+.- ++ .-......|.+|++++..++.+|......|.+.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~--~~----------~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~ 240 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDP--KA----------QSSAQLSLISTLEGELIRVQAQLAQLRSITPEQ 240 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh--HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 333455666666666666666666666554431 11 112344679999999999999999988888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002247 510 LISINELECQVKELKRELDKQAQEFEDD 537 (947)
Q Consensus 510 l~tI~~Le~q~~sLekELe~Qaq~fe~d 537 (947)
--.|-.|++++..|...+........+.
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~ 268 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGG 268 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8899999999999999988877666554
No 171
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.96 E-value=52 Score=33.75 Aligned_cols=96 Identities=25% Similarity=0.374 Sum_probs=71.0
Q ss_pred hhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHH
Q 002247 715 ETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLA 794 (947)
Q Consensus 715 e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~ 794 (947)
+....++....|.+++.+.+..+..+...+..........+...+..+..+...+..+...+.++.+.+.+...+.+.++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777777777777888887777777777777778888888888888888888888877777777777777
Q ss_pred HHHHHHHHHHHhhHHH
Q 002247 795 KQVFQLKDELQKKKEE 810 (947)
Q Consensus 795 kqv~qLk~eL~kkE~~ 810 (947)
.++.++...+..-...
T Consensus 165 ~~~~~~~~~~~~l~~~ 180 (191)
T PF04156_consen 165 SQLERLQENLQQLEEK 180 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777775555444443
No 172
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=75.90 E-value=1.2e+02 Score=32.66 Aligned_cols=183 Identities=21% Similarity=0.237 Sum_probs=95.3
Q ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHHHhh
Q 002247 530 QAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMT-EANEQRMQ 608 (947)
Q Consensus 530 Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~-Ea~eLR~q 608 (947)
++..|-.+++.......++.+.+..| ......+++++..+.......+..-.++....+. .......+
T Consensus 25 ~al~~L~~~~~~~~~~~~~~~~i~~a-----------P~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~ 93 (240)
T PF12795_consen 25 QALSFLDEIKKQKKRAAEYQKQIDQA-----------PKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQ 93 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHH
Confidence 45555555555555555555555555 5556677888888866544555555555544332 12223333
Q ss_pred HHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----hhhHHHHhhhhHHHHHHH
Q 002247 609 KAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDE-----HKSEAQKHEALSTEIHML 683 (947)
Q Consensus 609 k~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~-----~~~~~~~~~~~s~ei~~L 683 (947)
-..+..-|..+|..|..+.+.- ..+..++. .....+.....+|.+. ..........+..|...|
T Consensus 94 L~~~q~~l~~~~~~l~~~~~~p----~~aq~~l~-------~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l 162 (240)
T PF12795_consen 94 LQELQEQLQQENSQLIEIQTRP----ERAQQQLS-------EARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAAL 162 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHccH----HHHHHHHH-------HHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHH
Confidence 3444455555555555533322 22222222 2222222223333332 334466777788888888
Q ss_pred HHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 684 RTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 684 kaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
.++|..+..+.... .....-....|+.+...+..+..++..+++-||..+.
T Consensus 163 ~~~~~~le~el~s~-------------------~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 163 EAQIEMLEQELLSN-------------------NNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHCc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777633221 1112223455666666666666666666666665443
No 173
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=75.63 E-value=8.8 Score=36.02 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=36.4
Q ss_pred eeeeeee-ccCCccccccceecchhhhhcccCCcccccccccCCCCCeeeeee
Q 002247 84 IYHFIVS-TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHVTI 135 (947)
Q Consensus 84 iykfvVs-~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHVtI 135 (947)
..+|-|- -+..+..++|++.|++++... -.+....+||..-..| -|||.|
T Consensus 65 ~l~v~v~d~d~~~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~~~~g-~l~~~~ 115 (119)
T cd04036 65 VLELTVMDEDYVMDDHLGTVLFDVSKLKL-GEKVRVTFSLNPQGKE-ELEVEF 115 (119)
T ss_pred EEEEEEEECCCCCCcccEEEEEEHHHCCC-CCcEEEEEECCCCCCc-eEEEEE
Confidence 4566555 333378899999999998875 4688999999887656 345544
No 174
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.51 E-value=14 Score=38.47 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=37.2
Q ss_pred HHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHH
Q 002247 418 LKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLED 497 (947)
Q Consensus 418 L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~ 497 (947)
+.++|.++..++...++........|..|+..+..|..+..++-..|++-..-.-.+++|+.++.-..+.++..+..|+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555555555544444444455544444433566777666666666666666666
Q ss_pred HHHHHHHHH
Q 002247 498 KIKQQSEEY 506 (947)
Q Consensus 498 eLkeQ~~ef 506 (947)
|=++...|+
T Consensus 173 En~~Lv~Rw 181 (194)
T PF08614_consen 173 ENRELVERW 181 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 175
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=75.42 E-value=7.7 Score=36.08 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=46.9
Q ss_pred cccCccccCccchhhheecccCCccccccceeeeeee--ccCCccccccceecchhhhhcccCCccccccccc--CCCCC
Q 002247 54 VQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKF--ANSGA 129 (947)
Q Consensus 54 VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~--cnsGt 129 (947)
-.+-++.|...++-.+. +. .....|-|. .+..+..+||.|.|++++.+.......+..||.. -+.|
T Consensus 45 ~~~~~P~Wne~~~~~v~----~~-----~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G- 114 (124)
T cd04044 45 KDTSNPVWNETKYILVN----SL-----TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVG- 114 (124)
T ss_pred cCCCCCcceEEEEEEeC----CC-----CCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccce-
Confidence 34557888877644332 11 233444444 3445779999999999999986554446665542 2344
Q ss_pred eeeeeeeec
Q 002247 130 VLHVTIEKM 138 (947)
Q Consensus 130 vLHVtIQ~L 138 (947)
.|||.++.+
T Consensus 115 ~i~~~l~~~ 123 (124)
T cd04044 115 ELNYDLRFF 123 (124)
T ss_pred EEEEEEEeC
Confidence 569988864
No 176
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.41 E-value=1.5e+02 Score=35.36 Aligned_cols=182 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 002247 613 EEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 613 Ee~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~ 692 (947)
|+-.+.++.-+.. |++.+ ++.+++|-|.++...-+...|..--..+ +|++.|-+.|+.|..
T Consensus 127 e~k~~~~~~~~~q----~esll-e~~~q~da~~qq~~~ele~~d~~~~~d~--------------ee~kqlEe~ieeL~q 187 (446)
T KOG4438|consen 127 EEKMDLYRPFIQQ----LESLL-ELRKQLDAKYQQALKELERFDEDVEEDE--------------EEVKQLEENIEELNQ 187 (446)
T ss_pred HHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHhhcccccccH--------------HHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhc--cccCCCCCccccch-------hhhhHhhhhhHHHH-HHHHH-------------------------HhH
Q 002247 693 EQYNLSEHG--KRRDDNKPKVSTGE-------TDMLIQKWNRERDD-LEKKF-------------------------ASA 737 (947)
Q Consensus 693 e~~~L~e~~--~~~e~e~~k~s~~e-------~e~~l~~~~~er~~-L~~~i-------------------------a~l 737 (947)
-..-++-+- .+.+...+|++... ..-++-..-.+... |.+.| .-+
T Consensus 188 sl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l 267 (446)
T KOG4438|consen 188 SLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVEL 267 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHhhHHHHH---HHHHHHHHHHHhhHh------HHHHhhH------HHHHHHHHHHH
Q 002247 738 KQEAAKAHEELISMRSLKGENEMLIGNLQAEV---ENLKVQQNKLQNSLI------EEKLEKD------NLAKQVFQLKD 802 (947)
Q Consensus 738 k~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~---e~Lk~q~~~Lk~sls------~~~~EkE------~l~kqv~qLk~ 802 (947)
..-+.-+.+-++.++....+.-..++.++++. ..+.+---.|+..+- -+++|++ ++.+|+.-++-
T Consensus 268 ~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~k 347 (446)
T KOG4438|consen 268 QEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKK 347 (446)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHhh
Q 002247 803 ELQKKKEEINR 813 (947)
Q Consensus 803 eL~kkE~~~~~ 813 (947)
+..+......+
T Consensus 348 ek~~~~Qd~~~ 358 (446)
T KOG4438|consen 348 EKESRRQDLEN 358 (446)
T ss_pred HHHHHHHHHHH
No 177
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.08 E-value=1.9e+02 Score=34.55 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Q 002247 486 KELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRA 555 (947)
Q Consensus 486 ~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~a 555 (947)
.....+++.++.++..+.++++.-...|+.++..|.++..++ ..++.|++.+.......+.+.+..
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql----~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL----IETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHhhHHHHHHHHHHH
Confidence 456788888889999999988888888888888877766544 456666666655555555544333
No 178
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.00 E-value=1.9e+02 Score=34.53 Aligned_cols=89 Identities=19% Similarity=0.341 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 002247 441 IYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQV 520 (947)
Q Consensus 441 ~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~ 520 (947)
.++.|...||+.+.+ ++.+.+-+- +.....|.+++..+.+++.+|.....+....-..|..+...+
T Consensus 38 ~~l~q~q~ei~~~~~-------~i~~~~~~~-------~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEK-------KIREQQDQR-------AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 667888888888876 555544333 445566777777777777777666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHh
Q 002247 521 KELKRELDKQAQEFEDDIDAVTH 543 (947)
Q Consensus 521 ~sLekELe~Qaq~fe~dl~a~~~ 543 (947)
..|+.+-..|-..+..=|.++.+
T Consensus 104 ~~l~~q~r~qr~~La~~L~A~~r 126 (420)
T COG4942 104 NALEVQEREQRRRLAEQLAALQR 126 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666655555555555555555
No 179
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=74.83 E-value=4.4 Score=38.83 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=46.8
Q ss_pred eeeeccccC--cccceE--EEeeeCCCCCccccccccccccCccccCccchhh-heecccCCccccccceeeeeee---c
Q 002247 20 FQCNQVPKL--KKSAVM--ISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVT-VKLIREPKTGYIKEKIYHFIVS---T 91 (947)
Q Consensus 20 FhAtQVP~~--gwdkL~--vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEt-vkl~qD~~s~~~~e~iykfvVs---~ 91 (947)
.+|..+|.. |...-| |.+.|...... .-|+.|..+++ +|+|.- ..| +.....+..+| .|.|. .
T Consensus 19 i~ar~L~~~~~g~~dpYVkv~l~p~~~~~~---~~kT~v~~~t~---~P~~nE~F~f--~v~~~~~~~~l-~v~V~~~~~ 89 (119)
T cd08685 19 LEAKGLRSTNSGTCNSYVKISLSPDKEVRF---RQKTSTVPDSA---NPLFHETFSF--DVNERDYQKRL-LVTVWNKLS 89 (119)
T ss_pred EEEECCCCCCCCCCCeeEEEEEEeCCCCcc---eEeCccccCCC---CCccccEEEE--EcChHHhCCEE-EEEEECCCC
Confidence 455555543 222223 45666543332 22455666665 666643 333 23334445555 47774 2
Q ss_pred cCCccccccceecchhhhhc
Q 002247 92 GSSKSGFLGEASIDFADFAA 111 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~ 111 (947)
++.++.+||++.|.+++++.
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~ 109 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVN 109 (119)
T ss_pred CcCCCEEEEEEEecHHHhcc
Confidence 44568999999999999974
No 180
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.63 E-value=94 Score=31.88 Aligned_cols=64 Identities=19% Similarity=0.410 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHhhhHH
Q 002247 484 TIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK---RELDKQAQEFEDDIDAVTHAKTE 547 (947)
Q Consensus 484 ~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLe---kELe~Qaq~fe~dl~a~~~~~~E 547 (947)
.+.+...++..++.++.......++....+..++.....+. +....+.+.|..+...+...-.+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444444444444433 33334444444444444443333
No 181
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.35 E-value=9.2 Score=33.15 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=25.6
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 002247 421 KIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQ 458 (947)
Q Consensus 421 KI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~ 458 (947)
.|.+|...++.+..+++.|...+..|...|..|+.+||
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444455555556677777777777778888888776
No 182
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=74.06 E-value=2.4e+02 Score=35.22 Aligned_cols=75 Identities=25% Similarity=0.312 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHh
Q 002247 594 LAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKH 673 (947)
Q Consensus 594 ~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~ 673 (947)
.+..|=+|+..| ...|.+||...+.-+-. -+..+...+++|...|.+++.+++ ...
T Consensus 250 ri~~lE~e~e~L-------~~ql~~~N~~~~~~~~~---~i~~~~~~L~~kd~~i~~L~~di~--------------~~~ 305 (629)
T KOG0963|consen 250 RIVFLEREVEQL-------REQLAKANSSKKLAKID---DIDALGSVLNQKDSEIAQLSNDIE--------------RLE 305 (629)
T ss_pred HHHHHHHHHHHH-------HHHHHhhhhhhhhccCC---chHHHHHHHhHHHHHHHHHHHHHH--------------HHH
Confidence 344444555544 45577888877764222 344455556667777777777662 223
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 002247 674 EALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 674 ~~~s~ei~~Lkaeie~L~~ 692 (947)
.++.+|+.-.++.|-.|-.
T Consensus 306 ~S~~~e~e~~~~qI~~le~ 324 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEK 324 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655554
No 183
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=74.06 E-value=5.8 Score=37.17 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=52.6
Q ss_pred eeeeeccccCcc--cceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--cCC
Q 002247 19 QFQCNQVPKLKK--SAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--GSS 94 (947)
Q Consensus 19 qFhAtQVP~~gw--dkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--GSS 94 (947)
-+.|..+|...+ ....=-+|-+..|..+.||.- .-++-+..|...+.-.+ .+ .......|.|.- ..+
T Consensus 7 v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~-~~~t~~P~Wne~f~~~~---~~-----~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 7 VVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQT-IPNTLNPKWNYWCEFPI---FS-----AQNQLLKLILWDKDRFA 77 (128)
T ss_pred EEEeeCCCcccCCCCCCcCCeEEEEECCEEEecce-ecCCcCCccCCcEEEEe---cC-----CCCCEEEEEEEECCCCC
Confidence 466777776444 222111222234666665532 22233445554332111 11 124566676652 344
Q ss_pred ccccccceecchhhhhc--ccCCcccccccccC
Q 002247 95 KSGFLGEASIDFADFAA--ETEPLTLSLPLKFA 125 (947)
Q Consensus 95 kSgiLGEasINlAdYa~--a~kp~tVSLPLk~c 125 (947)
+..+||.+.|.+++... ......--+||..+
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCc
Confidence 77899999999999874 23334556678776
No 184
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.84 E-value=34 Score=33.97 Aligned_cols=69 Identities=25% Similarity=0.321 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHH
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDE 803 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~e 803 (947)
..+|+.+..+|..+..+.+.+... ...+..|..++..|...|+.+-..|-+..-+-|.|+.-|..||.=
T Consensus 43 ~~~r~~l~~Eiv~l~~~~e~~~~~-----------~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 43 EAERDELREEIVKLMEENEELRAL-----------KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 344555555554444444433221 234556677777777777777777776666666777666666643
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.52 E-value=2.2e+02 Score=34.56 Aligned_cols=257 Identities=21% Similarity=0.165 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh--
Q 002247 489 ESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN-- 566 (947)
Q Consensus 489 e~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~n-- 566 (947)
++|.+++----.....+|-+....+..+..++..+-.++ ......+..+.....+.++|...++..|..+.-=+
T Consensus 132 ~gQ~~~~~l~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~----~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 132 HGQHDQQLLFRPDEQRQLLDTFAGANEKVKAYRELYQAW----LKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred ECchHHHHhcCHHHHHHHHHHhcCchHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 455544322222234444454444545555555544333 34445566666666667777777766666554443
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-HHhh----HHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHH
Q 002247 567 TVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANE-QRMQ----KAHLEEMLQKANDELSLIKDQNGVKLQELSDQL 641 (947)
Q Consensus 567 a~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~e-LR~q----k~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~ 641 (947)
.-.-+.|..++.+|+-.- -+..++..+-. |-.. ..-.=..|..|...|..+ |-..++++...+
T Consensus 208 ~~E~e~L~~e~~~L~n~e---------~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~---~d~~~~~~~~~l 275 (563)
T TIGR00634 208 PGEDEALEAEQQRLSNLE---------KLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASV---IDGSLRELAEQV 275 (563)
T ss_pred CCcHHHHHHHHHHHhCHH---------HHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHh---hhHhHHHHHHHH
Confidence 456677888888876321 12233333322 1111 001223445555555554 444555555554
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHh
Q 002247 642 EQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQ 721 (947)
Q Consensus 642 d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~ 721 (947)
..=.-.++.+..+|.+.-..++ .+.+.. .+|+.-...+..|+. ++..+
T Consensus 276 ~~~~~~l~d~~~~l~~~~~~l~----~dp~~L----~ele~RL~~l~~Lkr---------------Kyg~s--------- 323 (563)
T TIGR00634 276 GNALTEVEEATRELQNYLDELE----FDPERL----NEIEERLAQIKRLKR---------------KYGAS--------- 323 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC----CCHHHH----HHHHHHHHHHHHHHH---------------HhCCC---------
Confidence 4444444444444422222221 111111 122222222222221 11111
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHH-HHhhHHHHHHHHHH
Q 002247 722 KWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEE-KLEKDNLAKQVFQL 800 (947)
Q Consensus 722 ~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~-~~EkE~l~kqv~qL 800 (947)
+.-+.+....+..+|..+.... ..+..|+.++..++.++..+=..||.. ..--..+.+.|...
T Consensus 324 ------------~e~l~~~~~~l~~eL~~l~~~~----~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~ 387 (563)
T TIGR00634 324 ------------VEEVLEYAEKIKEELDQLDDSD----ESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQE 387 (563)
T ss_pred ------------HHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333344444454443332 356668888888888888888888854 33334666666665
Q ss_pred HHHHHhhHH
Q 002247 801 KDELQKKKE 809 (947)
Q Consensus 801 k~eL~kkE~ 809 (947)
=.+|.-..+
T Consensus 388 l~~L~m~~~ 396 (563)
T TIGR00634 388 LKALAMEKA 396 (563)
T ss_pred HHhCCCCCc
Confidence 555544433
No 186
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.15 E-value=1.7e+02 Score=33.02 Aligned_cols=12 Identities=25% Similarity=0.147 Sum_probs=4.4
Q ss_pred HHhhHHHHHHHH
Q 002247 605 QRMQKAHLEEML 616 (947)
Q Consensus 605 LR~qk~~LEe~L 616 (947)
++.+...+...+
T Consensus 86 l~~~~~~l~a~~ 97 (423)
T TIGR01843 86 LESQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 187
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.12 E-value=2.9e+02 Score=35.84 Aligned_cols=70 Identities=21% Similarity=0.159 Sum_probs=44.3
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhh
Q 002247 237 NSPDDNLGSDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 310 (947)
Q Consensus 237 nsse~~L~se~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs 310 (947)
|+++. -|.+-.|+.+..|+.++.-+......+-++---|+ -.+-.+|.+++.--+-+.+.-+.|+|+||.
T Consensus 324 ~~sqk-d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~---~~ql~~le~~~~e~q~~~qe~~~e~eqLr~ 393 (980)
T KOG0980|consen 324 NASQK-DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQY---ENQLLALEGELQEQQREAQENREEQEQLRN 393 (980)
T ss_pred ccccC-ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44433 23557888888888888776665555543332222 233456777777777777777777777765
No 188
>PLN03188 kinesin-12 family protein; Provisional
Probab=73.05 E-value=1.6e+02 Score=39.43 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHH---------------hhHHHhhHHHHHHHHHhhhc
Q 002247 248 SVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQII---------------SLSSERDALTIECEQLRKQN 312 (947)
Q Consensus 248 ~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs---------------~Lk~ERD~LK~E~EqLKs~~ 312 (947)
..++||.|+-+|...++++.+||.+ -|.|+.|.+-.=..+++=- .|-+=.-....=|+.+|.--
T Consensus 1066 lteelr~eles~r~l~Ekl~~EL~~-eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaa 1144 (1320)
T PLN03188 1066 LAEELRTELDASRALAEKQKHELDT-EKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAA 1144 (1320)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999985 5668888876655555422 12222222222233333210
Q ss_pred c---cc--HHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 002247 313 S---ID--IAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQD 359 (947)
Q Consensus 313 k---~~--~~~~~~~lq~e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQE 359 (947)
- .. +.+-.+.|-.+.. .+-=|=+.|..|.|+=|..|+.||.-|-|
T Consensus 1145 akag~kg~~~~f~~alaae~s--~l~~ereker~~~~~enk~l~~qlrdtae 1194 (1320)
T PLN03188 1145 ARAGVRGAESKFINALAAEIS--ALKVEREKERRYLRDENKSLQAQLRDTAE 1194 (1320)
T ss_pred HHhccccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Confidence 0 00 1111122223322 22223356678999999999999999966
No 189
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=72.74 E-value=9.5 Score=36.60 Aligned_cols=93 Identities=20% Similarity=0.390 Sum_probs=51.3
Q ss_pred eeeccccCc-----ccc-eEEEeeeCCCCCccccccccccccCccccCccchhhh-eecccCCccccccceeeeeeec--
Q 002247 21 QCNQVPKLK-----KSA-VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTV-KLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 21 hAtQVP~~g-----wdk-L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtv-kl~qD~~s~~~~e~iykfvVs~-- 91 (947)
+|..+|... +|- .-|.+.|........| +.|..++ .+|+|.-+ .| +....++......|-|.-
T Consensus 23 ~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~k---T~v~~~t---~nP~~nE~f~f--~v~~~~l~~~~L~~~V~d~~ 94 (125)
T cd08393 23 QCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRK---TSVKKKT---LNPVFNETLRY--KVEREELPTRVLNLSVWHRD 94 (125)
T ss_pred EeCCCCCcCCCCCCCCcEEEEEEEcCCCcccccc---CccCcCC---CCCccCceEEE--ECCHHHhCCCEEEEEEEeCC
Confidence 455666532 222 3456677664333333 3344444 34554432 22 233345666777777763
Q ss_pred cCCccccccceecchhhhhcccCCccccccc
Q 002247 92 GSSKSGFLGEASIDFADFAAETEPLTLSLPL 122 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~a~kp~tVSLPL 122 (947)
..++..+||++.|+|+++--. .+.+.=.||
T Consensus 95 ~~~~~~~iG~~~i~L~~~~~~-~~~~~W~~L 124 (125)
T cd08393 95 SLGRNSFLGEVEVDLGSWDWS-NTQPTWYPL 124 (125)
T ss_pred CCCCCcEeEEEEEecCccccC-CCCcceEEC
Confidence 346788999999999999543 444444444
No 190
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=72.72 E-value=13 Score=36.62 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=63.1
Q ss_pred eeeeeccccCcccceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee--ccCCcc
Q 002247 19 QFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--TGSSKS 96 (947)
Q Consensus 19 qFhAtQVP~~gwdkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GSSkS 96 (947)
...|.++|...+....=.+|.+-.|..+.||. +.-.+-+..|...+.=.+ .++. .....|-|. -..++.
T Consensus 21 Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~-vi~~t~nP~Wne~f~f~v---~~~~-----~~~l~i~V~D~d~~~~d 91 (136)
T cd08375 21 IVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTK-VVSDTLNPKWNSSMQFFV---KDLE-----QDVLCITVFDRDFFSPD 91 (136)
T ss_pred EEEeeCCCCCCCCCCcCcEEEEEECCEeeecc-ccCCCCCCccCceEEEEe---cCcc-----CCEEEEEEEECCCCCCC
Confidence 56788888754444332333333466555443 333455566766543222 2322 234555554 233466
Q ss_pred ccccceecchhhhhc----ccCCcccccccccCCCCCeeeeee
Q 002247 97 GFLGEASIDFADFAA----ETEPLTLSLPLKFANSGAVLHVTI 135 (947)
Q Consensus 97 giLGEasINlAdYa~----a~kp~tVSLPLk~cnsGtvLHVtI 135 (947)
.+||.+.|++.++.. ...|.+--+||++-+.| -+||+|
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g-~i~l~~ 133 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHEVPTG-EVVVKL 133 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEeccccccce-eEEEEE
Confidence 899999999999986 23455566888888888 456655
No 191
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=72.31 E-value=15 Score=34.53 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=49.0
Q ss_pred eeeeeccccCcccc-----eEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec-c
Q 002247 19 QFQCNQVPKLKKSA-----VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST-G 92 (947)
Q Consensus 19 qFhAtQVP~~gwdk-----L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~-G 92 (947)
..+|..+|...... .-|.+.|......+.||. +.-.+.+..|...+.=. .....+......|-|.- +
T Consensus 22 vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~-v~~~~~nP~wne~f~f~------i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 22 VHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTS-VKKDNLNPVFDETFEFP------VSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred EEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecc-cccCCCCCEECeEEEEe------cCHHHhcCCEEEEEEEECC
Confidence 34666777653321 234444543323344332 22233344454433222 22233455667776653 2
Q ss_pred ---CCccccccceecchhhhhcccCCccccccc
Q 002247 93 ---SSKSGFLGEASIDFADFAAETEPLTLSLPL 122 (947)
Q Consensus 93 ---SSkSgiLGEasINlAdYa~a~kp~tVSLPL 122 (947)
+++..+||++.|++++.... ...+--+||
T Consensus 95 ~~~~~~~~~iG~~~i~l~~l~~~-~~~~~W~~L 126 (127)
T cd04030 95 SFLSREKKLLGQVLIDLSDLDLS-KGFTQWYDL 126 (127)
T ss_pred cccCCCCceEEEEEEeccccccc-CCccceEEC
Confidence 25789999999999996442 333444443
No 192
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=72.25 E-value=7.6 Score=37.18 Aligned_cols=102 Identities=13% Similarity=0.186 Sum_probs=59.2
Q ss_pred eeeeccccC----cccceEEEeeeCCCCCc-cccccccccccCccccCccchhhheecccCCccccccceeeeeeec--c
Q 002247 20 FQCNQVPKL----KKSAVMISLVPDDVGKP-TFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--G 92 (947)
Q Consensus 20 FhAtQVP~~----gwdkL~vSiVp~DtGK~-TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--G 92 (947)
|.|-.+|.. |.---||.| ..|+. ++|| .|..+++ +|+|.-.--+. ...+ .+..+|.|.- .
T Consensus 7 ~~a~~L~~~~~~~g~sDpYv~v---~l~~~~~~kT---~v~~kt~---~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~ 73 (121)
T cd08401 7 GEAKNLPPRSGPNKMRDCYCTV---NLDQEEVFRT---KTVEKSL---CPFFGEDFYFE-IPRT---FRHLSFYIYDRDV 73 (121)
T ss_pred EEccCCCCCCCCCCCcCcEEEE---EECCccEEEe---eEEECCC---CCccCCeEEEE-cCCC---CCEEEEEEEECCC
Confidence 667777763 222235444 33432 3333 3444443 67765543222 2111 3577888764 4
Q ss_pred CCccccccceecchhhhhcccCCcccccccccC-----CCCCeeeeeee
Q 002247 93 SSKSGFLGEASIDFADFAAETEPLTLSLPLKFA-----NSGAVLHVTIE 136 (947)
Q Consensus 93 SSkSgiLGEasINlAdYa~a~kp~tVSLPLk~c-----nsGtvLHVtIQ 136 (947)
.++..++|.+.|+++++.. ..+...-+||+.- .+|.| |+.+.
T Consensus 74 ~~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i-~l~~~ 120 (121)
T cd08401 74 LRRDSVIGKVAIKKEDLHK-YYGKDTWFPLQPVDADSEVQGKV-HLELR 120 (121)
T ss_pred CCCCceEEEEEEEHHHccC-CCCcEeeEEEEccCCCCcccEEE-EEEEE
Confidence 4567899999999999875 3455677888752 15666 87654
No 193
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=72.19 E-value=3.6e+02 Score=36.46 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=32.1
Q ss_pred HHHHHHHhHhHHHHHHHHHhhhhcccccchhchhhhhhhhhhhhhcc
Q 002247 896 VSLLKEKNKRMETELKEMQERYSEISLKFAEVEGERQQLVMTVRNLK 942 (947)
Q Consensus 896 ~~~lk~r~~~~e~el~~m~~rys~~sl~faevegerq~lvm~~~~~~ 942 (947)
+-.++.+..-++.|+...-..|.++- |+.|..+++.|--....+.
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~ 1054 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLS 1054 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhh
Confidence 44566667777778888888888776 7888888777766555544
No 194
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=71.81 E-value=6.8 Score=36.24 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=31.9
Q ss_pred ceeeeeee--ccCCccccccceecchhhhhcccCCcccccccccCC
Q 002247 83 KIYHFIVS--TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKFAN 126 (947)
Q Consensus 83 ~iykfvVs--~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cn 126 (947)
....|-|- ...++..++|++.|++++... ..+...++||..+.
T Consensus 61 ~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g 105 (115)
T cd04040 61 AVLKVEVYDWDRGGKDDLLGSAYIDLSDLEP-EETTELTLPLDGQG 105 (115)
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEEHHHcCC-CCcEEEEEECcCCC
Confidence 34445444 234578899999999999765 57788999998764
No 195
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.63 E-value=1.8e+02 Score=32.77 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=46.4
Q ss_pred HhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHH
Q 002247 735 ASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLA 794 (947)
Q Consensus 735 a~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~ 794 (947)
..|+.-=..+...++++..+..+.|..+..|.+..-++++-...++........|+..|.
T Consensus 158 ~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 158 KSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455555556677777788888888888888888888888888888888887777777776
No 196
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=71.51 E-value=13 Score=34.94 Aligned_cols=87 Identities=14% Similarity=0.248 Sum_probs=43.6
Q ss_pred eeeeccccCccc----c-eEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee-ccC
Q 002247 20 FQCNQVPKLKKS----A-VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS-TGS 93 (947)
Q Consensus 20 FhAtQVP~~gwd----k-L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs-~GS 93 (947)
..|..+|...+. - .-|.+.|...+....|| +..-.+.+..|..++ .| .............+|-|. .+.
T Consensus 22 ~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT-~v~~~~~~P~Wne~f----~f-~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 22 IRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRT-KTVHKTRNPEFNETL----TY-YGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred EEeeCCCCCCCCCCCCceEEEEEecCCCCCCceee-eeecCCCCCCccceE----EE-cCCCHHHhCCCEEEEEEEEcCC
Confidence 455567753321 1 22334444433333333 233334456665543 11 111122333445566554 444
Q ss_pred Cccccccceecchhhhhcc
Q 002247 94 SKSGFLGEASIDFADFAAE 112 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a 112 (947)
.+..++|++.|.+++....
T Consensus 96 ~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 96 FGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cCCeeEEEEEEEcccCCCC
Confidence 4788999999999987653
No 197
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.51 E-value=36 Score=38.49 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhh
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNS 782 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~s 782 (947)
..++.+|..++..++.|...+.++-...-...+.....+..++.+..++.+|+.-..+.
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555555555555566666666677777766654443
No 198
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.13 E-value=2.3e+02 Score=34.39 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 633 KLQELSDQLEQKDKQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 633 kl~eL~~q~d~K~k~ie~m~~el~~kSkqle 663 (947)
+|.+.-..++.|...+++-...|+.+.++|.
T Consensus 77 rL~qrE~rL~qRee~Lekr~e~Lekre~~Le 107 (514)
T TIGR03319 77 ELQRLERRLLQREETLDRKMESLDKKEENLE 107 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555444
No 199
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=70.60 E-value=2.6e+02 Score=34.11 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHhhhccc----chhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHh--------hHHHHHHHHHHHHH
Q 002247 736 SAKQEAAKAHEELISMRSLK----GENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLE--------KDNLAKQVFQLKDE 803 (947)
Q Consensus 736 ~lk~Ea~~~~~eL~~~k~~k----dekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~E--------kE~l~kqv~qLk~e 803 (947)
--+-|.+++..||+.+..+- =..|..+..--.+++.++.-|+.-+..+.+...= |=+.|.+|--|+.+
T Consensus 530 a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~~~~fk~~IQssledl~~~ 609 (622)
T COG5185 530 AQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKINIQSSLEDLENE 609 (622)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHH
Confidence 34456666666666644322 2345556666666666666666666655543321 22778888888888
Q ss_pred HHhhHHHHhhh
Q 002247 804 LQKKKEEINRT 814 (947)
Q Consensus 804 L~kkE~~~~~~ 814 (947)
|.|-=+++.+.
T Consensus 610 l~k~~~~l~~~ 620 (622)
T COG5185 610 LGKVIEELRNL 620 (622)
T ss_pred HHHHHHHHHhc
Confidence 88776666543
No 200
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=70.45 E-value=17 Score=36.90 Aligned_cols=87 Identities=20% Similarity=0.247 Sum_probs=52.1
Q ss_pred eeeeeccccCcc----cc-eEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--
Q 002247 19 QFQCNQVPKLKK----SA-VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~gw----dk-L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
..+|..+|...+ |. .-|++.|...|....||. ..-++- +|+|.-.-........++.+....|.|.-
T Consensus 33 Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~-vi~~t~-----nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d 106 (162)
T cd04020 33 VKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTP-VVKKSV-----NPVWNHTFVYDGVSPEDLSQACLELTVWDHD 106 (162)
T ss_pred EEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCC-ccCCCC-----CCCCCCEEEEecCCHHHhCCCEEEEEEEeCC
Confidence 567777876431 22 234466777777766653 222333 55554433333223344566777887762
Q ss_pred cCCccccccceecchhhhhc
Q 002247 92 GSSKSGFLGEASIDFADFAA 111 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~ 111 (947)
..++..+||++.|+++++..
T Consensus 107 ~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 107 KLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCCceEEEEEEeCCcccc
Confidence 34568999999999998764
No 201
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=70.12 E-value=13 Score=34.69 Aligned_cols=30 Identities=37% Similarity=0.556 Sum_probs=21.9
Q ss_pred ccccceeeeeee--ccCCccccccceecchhh
Q 002247 79 YIKEKIYHFIVS--TGSSKSGFLGEASIDFAD 108 (947)
Q Consensus 79 ~~~e~iykfvVs--~GSSkSgiLGEasINlAd 108 (947)
.+.+....|-|. -+.++..+||++.|.+++
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 344556667665 245678899999999998
No 202
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.11 E-value=2.9e+02 Score=34.53 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=65.4
Q ss_pred chhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHH
Q 002247 412 DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQ 491 (947)
Q Consensus 412 ~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q 491 (947)
..+++++=.++.+-..=|....++++.|.. |+..+.+.....|.+-+..+...-.|. -.-|..|-..
T Consensus 234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~---ql~~~N~~~~~~~~~~i~~~~~~L~~k----------d~~i~~L~~d 300 (629)
T KOG0963|consen 234 AAEVSLIMTELEDAQQRIVFLEREVEQLRE---QLAKANSSKKLAKIDDIDALGSVLNQK----------DSEIAQLSND 300 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhccCCchHHHHHHHhHH----------HHHHHHHHHH
Confidence 346666655555555555555566666654 666777777777666665555544332 2335555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHh
Q 002247 492 SERLEDKIKQQSEEYSESLISINELECQVKELK---RELDKQAQEFEDDIDAVTH 543 (947)
Q Consensus 492 ~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLe---kELe~Qaq~fe~dl~a~~~ 543 (947)
|++++.=+.+-.. ....+|+.|+.++++.. ++|..+++++ +|.++|-.
T Consensus 301 i~~~~~S~~~e~e---~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ 351 (629)
T KOG0963|consen 301 IERLEASLVEERE---KHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKK 351 (629)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHH
Confidence 5555554443333 34455666666665544 4455667776 77776643
No 203
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=69.95 E-value=8.6 Score=36.25 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=43.8
Q ss_pred cCccccCccchhhheecccCCccccccceeeeeee-ccC-CccccccceecchhhhhcccCC----cccccccccCC--C
Q 002247 56 NGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS-TGS-SKSGFLGEASIDFADFAAETEP----LTLSLPLKFAN--S 127 (947)
Q Consensus 56 nG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs-~GS-SkSgiLGEasINlAdYa~a~kp----~tVSLPLk~cn--s 127 (947)
+.+..|...++-.+.- +.-+. ......|.|. -+. .+..+||++.|.++++.....+ ...+.||..-+ .
T Consensus 44 ~~~P~Wne~f~f~v~~---~~~~~-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~ 119 (125)
T cd04051 44 GTNPTWNETLRFPLDE---RLLQQ-GRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119 (125)
T ss_pred CCCCCCCCEEEEEcCh---Hhccc-CccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc
Confidence 3577888766544331 11011 1234455554 454 5778999999999999986643 36777887532 3
Q ss_pred CCeee
Q 002247 128 GAVLH 132 (947)
Q Consensus 128 GtvLH 132 (947)
+.+||
T Consensus 120 ~G~~~ 124 (125)
T cd04051 120 QGVLN 124 (125)
T ss_pred CeEEe
Confidence 44554
No 204
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=69.86 E-value=95 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhh
Q 002247 521 KELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWK 565 (947)
Q Consensus 521 ~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~ 565 (947)
.-+.+=|+.+......+++.....+.+-+.....+++.|+.+|-.
T Consensus 30 kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 30 KPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777888888888888888888777777888888887765
No 205
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.50 E-value=51 Score=30.14 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLT 461 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls 461 (947)
....|+.||..+.+-|...+.++++|+.+=.+|....+.|.+||..+-
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456789999999988998888999998888888888888888776443
No 206
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=69.30 E-value=82 Score=31.32 Aligned_cols=62 Identities=27% Similarity=0.349 Sum_probs=44.8
Q ss_pred hhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002247 474 KSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFED 536 (947)
Q Consensus 474 ~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~ 536 (947)
++.++...+..+..|+.++..+..+++.....||..- ...-|+..+...+++-+.=|..|-.
T Consensus 60 ~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeSe~lae~fl~ 121 (150)
T PF07200_consen 60 LRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEESEELAEEFLD 121 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHHC-S-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445566677778888888888888888888888765 4446888888888887777777754
No 207
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=68.81 E-value=17 Score=36.43 Aligned_cols=111 Identities=17% Similarity=0.245 Sum_probs=60.8
Q ss_pred eeeeccccCcccceEEEeeeCCCCCccccccccccc-cCccccCccchhhheecccCCccccccceeeeeee--ccCCcc
Q 002247 20 FQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQ-NGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--TGSSKS 96 (947)
Q Consensus 20 FhAtQVP~~gwdkL~vSiVp~DtGK~TaKs~KA~Vr-nG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GSSkS 96 (947)
..|-.+|........=.+|-+..|....||. .... +-+..|...+.= .+.++.. + ...|.|. -+.++.
T Consensus 7 i~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk-~~~~~t~nP~WNE~F~f---~v~~~~~----~-~l~v~V~d~~~~~~d 77 (150)
T cd04019 7 IEAQDLVPSDKNRVPEVFVKAQLGNQVLRTR-PSQTRNGNPSWNEELMF---VAAEPFE----D-HLILSVEDRVGPNKD 77 (150)
T ss_pred EEeECCCCCCCCCCCCeEEEEEECCEEeeeE-eccCCCCCCcccCcEEE---EecCccC----C-eEEEEEEEecCCCCC
Confidence 3566665543322211233333455444433 2222 346667654321 1223322 2 3334443 355678
Q ss_pred ccccceecchhhhhcc---cCCcccccccccCC----------CCCeeeeeeeecc
Q 002247 97 GFLGEASIDFADFAAE---TEPLTLSLPLKFAN----------SGAVLHVTIEKMD 139 (947)
Q Consensus 97 giLGEasINlAdYa~a---~kp~tVSLPLk~cn----------sGtvLHVtIQ~L~ 139 (947)
.+||.+.|++.++... ..+...-+||.... ++.-|||.|+.-+
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999999998643 34556778888653 4478899888543
No 208
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=68.65 E-value=1.1e+02 Score=31.80 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhcc
Q 002247 264 ELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNS 313 (947)
Q Consensus 264 d~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k 313 (947)
-....++..||.++.. --..+++.++.+...|+.|++.|+...+
T Consensus 54 ~~~~a~~~eLr~el~~------~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 54 YLFKAAIAELRSELQN------SRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555542 1234567788888888888888887554
No 209
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=68.52 E-value=18 Score=34.03 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=54.6
Q ss_pred EEEEeeeeeccccCcccc-----eEEEeeeCCCCCcc--ccccccccccCccccCccchhhheecccCCccccccceeee
Q 002247 15 VFKLQFQCNQVPKLKKSA-----VMISLVPDDVGKPT--FKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHF 87 (947)
Q Consensus 15 vFklqFhAtQVP~~gwdk-----L~vSiVp~DtGK~T--aKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykf 87 (947)
.+.|+..|.++|...|.. +-|.+.+...|+.+ .|| +..-.+-+..|...++=.+.+ +. -...+|
T Consensus 2 ~~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT-~vi~~t~nP~wne~f~f~~~~---~~-----~~~l~~ 72 (120)
T cd04048 2 KVELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRT-EVIKNNLNPDFVTTFTVDYYF---EE-----VQKLRF 72 (120)
T ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccE-eEeCCCCCCCceEEEEEEEEe---Ee-----eeEEEE
Confidence 356889999999766543 23444444322221 222 222333344565544322211 11 123445
Q ss_pred eee---c---cCCccccccceecchhhhhcccCCccccccc
Q 002247 88 IVS---T---GSSKSGFLGEASIDFADFAAETEPLTLSLPL 122 (947)
Q Consensus 88 vVs---~---GSSkSgiLGEasINlAdYa~a~kp~tVSLPL 122 (947)
.|. + +.++..+||++.|++++.+.. ....+.+||
T Consensus 73 ~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~-~~~~~~~~l 112 (120)
T cd04048 73 EVYDVDSKSKDLSDHDFLGEAECTLGEIVSS-PGQKLTLPL 112 (120)
T ss_pred EEEEecCCcCCCCCCcEEEEEEEEHHHHhcC-CCcEEEEEc
Confidence 554 2 156889999999999999863 456677777
No 210
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=68.39 E-value=89 Score=38.00 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=36.5
Q ss_pred hhhhhhhhccHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHH
Q 002247 624 SLIKDQNGVKLQELSDQLEQ---KDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 624 ~~~~~~~e~kl~eL~~q~d~---K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~ 692 (947)
..|+.-|..++.+|..++.. |.... ..|-....+.|... +....++..|+..+...|.+|..
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f---~~Ec~aL~~rL~~a----E~ek~~l~eeL~~a~~~i~~LqD 476 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHF---YAECRALQKRLESA----EKEKESLEEELKEANQNISRLQD 476 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44899999999999887654 55555 44444445555533 22333455555555555555543
No 211
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.98 E-value=2.3e+02 Score=32.47 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=38.8
Q ss_pred hhhhhHHHHHHHHHHHHHH-hhh-hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHH
Q 002247 565 KNTVTAERLQDEFRRLSVD-MAS-KFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLE 642 (947)
Q Consensus 565 ~na~~~e~LQ~e~~~LS~q-m~s-~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d 642 (947)
.+-...+.|++++++|-+- +++ +--+-|+-.++-|++ |+.+|+.+...+.. -.++.+|..+++
T Consensus 104 ~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~----------L~k~le~~~k~~e~-----~~~~~el~aei~ 168 (294)
T COG1340 104 LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKE----------LRKELEDAKKALEE-----NEKLKELKAEID 168 (294)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----------HHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 4566777888888877542 222 222345555555544 66777776544443 224444444444
Q ss_pred HHHHHHHHHHHHH
Q 002247 643 QKDKQIQKMYLEL 655 (947)
Q Consensus 643 ~K~k~ie~m~~el 655 (947)
--.......-.++
T Consensus 169 ~lk~~~~e~~eki 181 (294)
T COG1340 169 ELKKKAREIHEKI 181 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 4333333333333
No 212
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=67.93 E-value=1e+02 Score=34.99 Aligned_cols=65 Identities=20% Similarity=0.115 Sum_probs=32.2
Q ss_pred cccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 002247 753 SLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKG 817 (947)
Q Consensus 753 ~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~ 817 (947)
|.=|-.|..+..-..-+++-+..+..||.-..-=...-++|.+...+|--||.-||.-++.+|..
T Consensus 39 fQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQ 103 (307)
T PF10481_consen 39 FQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQ 103 (307)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 33344455555555555555555555553222112223344455555555666666665555544
No 213
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=67.72 E-value=2e+02 Score=31.67 Aligned_cols=115 Identities=28% Similarity=0.370 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh
Q 002247 487 ELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN 566 (947)
Q Consensus 487 eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~n 566 (947)
+|+.++..++.+++.-......+--++..|+.+.+.++ .+....++++..|+++..+.+...
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~ae------------------eea~~Le~k~~eaee~~~rL~~~~ 70 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAE------------------EEAEELEQKRQEAEEEKQRLEEEA 70 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544444444333 333344555555555555554444
Q ss_pred hhhH---HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 002247 567 TVTA---ERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDEL 623 (947)
Q Consensus 567 a~~~---e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL 623 (947)
.-+. ++|..++..+...+....++.++. -.|+..|+.+.....+.+.++.++|
T Consensus 71 ~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~k----e~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 71 EMQEEEKEQLEQELREAEAEIARLEEESERK----EEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 367777777777777777666654 3577888888878888888888887
No 214
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=67.58 E-value=9.8 Score=36.24 Aligned_cols=105 Identities=14% Similarity=0.247 Sum_probs=60.2
Q ss_pred eeeeeccccCcccce-----EEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--
Q 002247 19 QFQCNQVPKLKKSAV-----MISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~gwdkL-----~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
-+.|-++|...+... .|.+-|....+...||. ..-.+-++.|...++=.+. .+. .+....|.|..
T Consensus 19 i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~-v~~~~~~P~wne~f~~~~~------~~~-~~~~l~v~v~d~~ 90 (131)
T cd04026 19 VREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTK-TIKKTLNPVWNETFTFDLK------PAD-KDRRLSIEVWDWD 90 (131)
T ss_pred EEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecce-eecCCCCCCccceEEEeCC------chh-cCCEEEEEEEECC
Confidence 567888886543332 23333332223444433 3333445566555443322 122 23455565552
Q ss_pred cCCccccccceecchhhhhcccCCcccccccccCCCCCeeee
Q 002247 92 GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHV 133 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHV 133 (947)
...+..+||.+.|++++.... +..--.||..-.+|.+-.|
T Consensus 91 ~~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~~~~~~~~ 130 (131)
T cd04026 91 RTTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQEEGEYYNV 130 (131)
T ss_pred CCCCcceeEEEEEeHHHhCcC--ccCceEECcCccccccccC
Confidence 234678999999999999864 6667789988888876543
No 215
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=67.46 E-value=39 Score=36.47 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=64.9
Q ss_pred ccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHH---HhhHh---H
Q 002247 712 STGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKL---QNSLI---E 785 (947)
Q Consensus 712 s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~L---k~sls---~ 785 (947)
.+.++...+.........|...+..-.-|.+...+||.+.++..+=+-.-++.|..|+-.|+.....+ +...+ .
T Consensus 39 ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~ 118 (202)
T PF06818_consen 39 QLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSE 118 (202)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccc
Confidence 34555566666666677777666666667777788888777766666666778888888888887776 22211 1
Q ss_pred -H---------HHhhHHHHHHHHHHHHHHHhhHH
Q 002247 786 -E---------KLEKDNLAKQVFQLKDELQKKKE 809 (947)
Q Consensus 786 -~---------~~EkE~l~kqv~qLk~eL~kkE~ 809 (947)
+ ......|+.+|-+|+.+|..-..
T Consensus 119 ~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 119 SDEAKAQRQAGEDELGSLRREVERLRAELQRERQ 152 (202)
T ss_pred cchhHHhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 1 12344788889999888876444
No 216
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=67.07 E-value=1.4e+02 Score=36.54 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHH
Q 002247 761 LIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLA 794 (947)
Q Consensus 761 ~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~ 794 (947)
.-+.++.|.+++..+|.++-..+.+.+.|.-+|+
T Consensus 269 a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 269 AQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567888999999999999999999888887554
No 217
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=66.08 E-value=13 Score=34.63 Aligned_cols=104 Identities=15% Similarity=0.252 Sum_probs=56.1
Q ss_pred eeeeeccccCccc---ceEEEeeeCCCCCcccccccccccc-CccccCccchhhheecccCCccccccceeeeeee-ccC
Q 002247 19 QFQCNQVPKLKKS---AVMISLVPDDVGKPTFKLEKVPVQN-GTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS-TGS 93 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~vSiVp~DtGK~TaKs~KA~Vrn-G~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs-~GS 93 (947)
-+.|..+|...+- .-||.|. .|....||. ...++ -+..|...+.=.+.. + ......|-|. -..
T Consensus 7 v~~A~~L~~~~~~~~~dpyv~v~---~~~~~~kT~-~~~~~~~nP~Wne~f~f~v~~---~-----~~~~l~i~v~d~~~ 74 (118)
T cd08681 7 VLKARNLPNKRKLDKQDPYCVLR---IGGVTKKTK-TDFRGGQHPEWDEELRFEITE---D-----KKPILKVAVFDDDK 74 (118)
T ss_pred EEEccCCCCCCcCCCCCceEEEE---ECCCccccc-cccCCCCCCccCceEEEEecC---C-----CCCEEEEEEEeCCC
Confidence 3566677754322 1233332 333444433 22233 367787765443332 1 2344555554 333
Q ss_pred CccccccceecchhhhhcccCCcccccccccC--CCCCeeeeeee
Q 002247 94 SKSGFLGEASIDFADFAAETEPLTLSLPLKFA--NSGAVLHVTIE 136 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a~kp~tVSLPLk~c--nsGtvLHVtIQ 136 (947)
....+||++.|+++++... ......+||... ++| -|||.++
T Consensus 75 ~~~~~iG~~~~~l~~~~~~-~~~~~w~~L~~~~~~~G-~i~l~l~ 117 (118)
T cd08681 75 RKPDLIGDTEVDLSPALKE-GEFDDWYELTLKGRYAG-EVYLELT 117 (118)
T ss_pred CCCcceEEEEEecHHHhhc-CCCCCcEEeccCCcEee-EEEEEEE
Confidence 3378999999999998763 345677788753 234 4555543
No 218
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=65.80 E-value=8.3 Score=36.38 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=32.5
Q ss_pred ccccccceeeeeeec--cCCccccccceecchhhhhcccCCcccccccc
Q 002247 77 TGYIKEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLK 123 (947)
Q Consensus 77 s~~~~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk 123 (947)
.+.+..+...|.|.- ..++..+||++.|++++..... +.+.-+||+
T Consensus 76 ~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 76 PQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred HHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCC-CcceEEECc
Confidence 344556667777753 4567899999999999987543 666666665
No 219
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=65.52 E-value=1.4e+02 Score=33.85 Aligned_cols=122 Identities=16% Similarity=0.255 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccch
Q 002247 678 TEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGE 757 (947)
Q Consensus 678 ~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kde 757 (947)
+-|+-|-.-+++|++|+.-= . --+.-+|+-|++....-.+=..+++.|+.|-..+.+..+++-.-+++
T Consensus 18 qKIqelE~QldkLkKE~qQr-----Q-------fQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqK 85 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQR-----Q-------FQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQK 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----H-------HhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 45777777778888755431 0 01234667777777666666777788888888888888888888888
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q 002247 758 NEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGL 818 (947)
Q Consensus 758 kE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~l 818 (947)
..--++.-.+.|--|-.|.+-.|. -.+.|...|.++|++|.+---+....+..|
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kk-------qie~Leqelkr~KsELErsQ~~~~~~~~sl 139 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKK-------QIEKLEQELKRCKSELERSQQAASSGDVSL 139 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 888888888888888888777776 446677778888888888777655444333
No 220
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.97 E-value=3.5e+02 Score=33.63 Aligned_cols=46 Identities=35% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 002247 485 IKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQ 530 (947)
Q Consensus 485 I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Q 530 (947)
|.++.++++.++.+++.-..........+.+.+.....+++++.-+
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444445555444433
No 221
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.81 E-value=2.9e+02 Score=32.55 Aligned_cols=63 Identities=17% Similarity=0.135 Sum_probs=35.4
Q ss_pred hhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh
Q 002247 718 MLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI 784 (947)
Q Consensus 718 ~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls 784 (947)
..+.....+...+..+++.+.++...+..++..+ ...+..+..|+.+++..+..|+.+...+-
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~----~~~~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRTI----PEVEAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555443 24556666667777777776666655443
No 222
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=64.78 E-value=2e+02 Score=30.72 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=16.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 002247 431 FFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEK 466 (947)
Q Consensus 431 ~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq 466 (947)
.++.+..++..+.+..+....++.+||-.++=-|+.
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~ 66 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKK 66 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444444444444444444555555544444444
No 223
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.67 E-value=3.5e+02 Score=33.53 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=69.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------------H-----HHH
Q 002247 481 SLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDD--------------I-----DAV 541 (947)
Q Consensus 481 ~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~d--------------l-----~a~ 541 (947)
..-.++.+..+...|-++.-++..+.-+..+.|.-+=.++.++-..|-.-+..+..+ + -.+
T Consensus 344 l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l 423 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLL 423 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHH
Confidence 344555666666666666666666555555555444444444444444332222222 0 001
Q ss_pred HhhhHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002247 542 THAKTEQEQRAIRAE---EELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQK 618 (947)
Q Consensus 542 ~~~~~EqEqRai~ae---eaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk 618 (947)
....-+=..+...|+ ..|-..+-+.+.+.+-++..++.+..++...-+.=+..-..|=.|-..-|..-.+||+-|++
T Consensus 424 ~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~ 503 (581)
T KOG0995|consen 424 KELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLN 503 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111 25666677777777777777777777776554444444444444444445555555555555
Q ss_pred hH
Q 002247 619 AN 620 (947)
Q Consensus 619 ~n 620 (947)
-+
T Consensus 504 l~ 505 (581)
T KOG0995|consen 504 LK 505 (581)
T ss_pred HH
Confidence 43
No 224
>PLN02939 transferase, transferring glycosyl groups
Probab=64.43 E-value=2e+02 Score=37.63 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHhh------HHHHHHHHHHHHHHHhhHHHHhh
Q 002247 767 AEVENLKVQQNKLQNSLIEEKLEK------DNLAKQVFQLKDELQKKKEEINR 813 (947)
Q Consensus 767 ~E~e~Lk~q~~~Lk~sls~~~~Ek------E~l~kqv~qLk~eL~kkE~~~~~ 813 (947)
.+-..|+.+.+.|..||-+....| |.||++|-.|+.-|.+..+++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (977)
T PLN02939 324 DQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHS 376 (977)
T ss_pred ccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345678888888888887665555 57899999999999998888776
No 225
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.42 E-value=3e+02 Score=32.64 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=41.5
Q ss_pred CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHH
Q 002247 245 SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTI 303 (947)
Q Consensus 245 se~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~ 303 (947)
....+..+..|+..+......+..+++.|+-++-.+. .-=..+|.+||.....
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~------~~~~~~LqEEr~R~er 262 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREY------QFILEALQEERYRYER 262 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHH
Confidence 5568899999999999999999999999998876654 3344678888877655
No 226
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.10 E-value=74 Score=32.44 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhcc
Q 002247 248 SVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNS 313 (947)
Q Consensus 248 ~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k 313 (947)
.|..|+.++..+......+..+|..|++.... .+|...|..|..|+..|...++.|++...
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45555555555555555555555555554443 58999999999999999999999998555
No 227
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=64.06 E-value=3.9e+02 Score=33.77 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 640 QLEQKDKQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 640 q~d~K~k~ie~m~~el~~kSkqle 663 (947)
.+++..+....+..++.....+++
T Consensus 169 ~~~~~~k~~~~~~~~~~~~~~~l~ 192 (670)
T KOG0239|consen 169 LLDLALKESLKLESDLGDLVTELE 192 (670)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445555555555566555555555
No 228
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=63.93 E-value=8.6 Score=37.45 Aligned_cols=68 Identities=26% Similarity=0.459 Sum_probs=41.9
Q ss_pred EEeeeCCCCCccccccccccccCccccCccchhhh-eecccCCccccccceeeeeee-cc-CCccccccceecchhhhh
Q 002247 35 ISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTV-KLIREPKTGYIKEKIYHFIVS-TG-SSKSGFLGEASIDFADFA 110 (947)
Q Consensus 35 vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtv-kl~qD~~s~~~~e~iykfvVs-~G-SSkSgiLGEasINlAdYa 110 (947)
|++.|... +.. ..|+.|..++| +|+|--+ .| +..-+++..+..+|-|. .| .++.-+||++.|.|+++.
T Consensus 43 v~llp~~~-~~~--k~kT~v~~~t~---nPvfNE~F~f--~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 43 VCLLPDKS-HNS--KRKTAVKKGTV---NPVFNETLKY--VVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred EEEEeCCc-ccc--eeecccccCCC---CCccceEEEE--EcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc
Confidence 45566552 221 23556777776 4555332 33 23345566666666665 44 468889999999999983
No 229
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.81 E-value=52 Score=34.74 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh
Q 002247 725 RERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI 784 (947)
Q Consensus 725 ~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls 784 (947)
.+|..+..++..|+++...++.+|...... .- ..|..+..++..++..-+.-++.++
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~--Dp-~~i~~~~~~~~~~~~~anrwTDNI~ 159 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSEN--DP-EKIEKLKEEIKIAKEAANRWTDNIF 159 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CH-HHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 788889999999999999998888844432 22 4677777777777777777776654
No 230
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=63.30 E-value=38 Score=32.58 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=61.2
Q ss_pred eeeeeccccCcccceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--cCCcc
Q 002247 19 QFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--GSSKS 96 (947)
Q Consensus 19 qFhAtQVP~~gwdkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--GSSkS 96 (947)
-..|..+|..+.-.-||-|-=. |+..+||. |..| .+|++.-.-... ...+..+ .+.|.|.- ..++.
T Consensus 10 Vi~A~~L~~~~~~DPYv~v~l~--~~~~~kT~---v~~~----~nP~WnE~f~f~-~~~~~~~--~l~v~v~d~~~~~~d 77 (126)
T cd08400 10 VLEAHKLPVKHVPHPYCVISLN--EVKVARTK---VREG----PNPVWSEEFVFD-DLPPDVN--SFTISLSNKAKRSKD 77 (126)
T ss_pred EEEeeCCCCCCCCCeeEEEEEC--CEeEEEee---cCCC----CCCccCCEEEEe-cCCCCcC--EEEEEEEECCCCCCC
Confidence 3567777876655555543321 22333332 3333 367765433332 2233322 34466653 44678
Q ss_pred ccccceecchhhhhcccCCcccccccccCCC-----CCeeeeeeeec
Q 002247 97 GFLGEASIDFADFAAETEPLTLSLPLKFANS-----GAVLHVTIEKM 138 (947)
Q Consensus 97 giLGEasINlAdYa~a~kp~tVSLPLk~cns-----GtvLHVtIQ~L 138 (947)
.++|++.|.|+++.. ......-+||...+. +.-|||.++..
T Consensus 78 ~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 78 SEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred CeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 999999999999876 445567788876532 24568877753
No 231
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=63.11 E-value=2.1e+02 Score=35.91 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=17.3
Q ss_pred hhhhhhchhhhHhHHHHHHHHHHHHHHHH
Q 002247 472 SMKSRECIESLATIKELESQSERLEDKIK 500 (947)
Q Consensus 472 ~k~q~EcSs~~~~I~eLe~q~e~LE~eLk 500 (947)
.+....+.+.+..+..+..+...+...+.
T Consensus 131 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 159 (670)
T KOG0239|consen 131 SQAEEDNPSIFVSLLELAQENRGLYLDLS 159 (670)
T ss_pred hhhhcccccHHHHHHHHHhhhcccccccc
Confidence 44556667777777777665555544443
No 232
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=62.91 E-value=9.9 Score=36.20 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=42.4
Q ss_pred CCccccccccccccCccccCccchhhheecccCCccccccceeeeeee-ccCC---ccccccceecchhhhhcccCCccc
Q 002247 43 GKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS-TGSS---KSGFLGEASIDFADFAAETEPLTL 118 (947)
Q Consensus 43 GK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs-~GSS---kSgiLGEasINlAdYa~a~kp~tV 118 (947)
|...+||. +.-.+-++.|..+++=.+. + .....|-|. .++. ...+||.+.|++.+......+..-
T Consensus 31 ~~~~~kT~-v~~~t~nP~Wne~f~~~~~----~------~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 99 (123)
T cd08382 31 GGQTHSTD-VAKKTLDPKWNEHFDLTVG----P------SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQ 99 (123)
T ss_pred CccceEcc-EEcCCCCCcccceEEEEeC----C------CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccc
Confidence 45556553 2223446777766654442 1 235556554 3322 247999999999999877666555
Q ss_pred ccccc
Q 002247 119 SLPLK 123 (947)
Q Consensus 119 SLPLk 123 (947)
.+||+
T Consensus 100 ~~~l~ 104 (123)
T cd08382 100 RLDLR 104 (123)
T ss_pred eeEee
Confidence 66763
No 233
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.83 E-value=44 Score=36.78 Aligned_cols=88 Identities=27% Similarity=0.295 Sum_probs=61.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002247 431 FFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESL 510 (947)
Q Consensus 431 ~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l 510 (947)
..|.+.++++.|++++-...++|-+||-.+-.++++ .|+ -+..|+...-+|+..++..-.+++.-.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee--~~e------------rlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEE--VQE------------RLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------HHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 446777777777777777777777766666555554 233 234566666678888888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 002247 511 ISINELECQVKELKRELDKQAQ 532 (947)
Q Consensus 511 ~tI~~Le~q~~sLekELe~Qaq 532 (947)
...++|+-.+..++.++=..+-
T Consensus 198 ~r~~ELe~~~El~e~~~i~dl~ 219 (290)
T COG4026 198 KRWDELEPGVELPEEELISDLV 219 (290)
T ss_pred HHHHHhcccccchHHHHHHHHH
Confidence 8888888888887776654443
No 234
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.50 E-value=2.7e+02 Score=31.36 Aligned_cols=89 Identities=15% Similarity=0.236 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHH
Q 002247 443 IKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINE-LECQVK 521 (947)
Q Consensus 443 meQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~-Le~q~~ 521 (947)
|++|..-|.-|+.-|..++-..-..+-.. +.+|..| =.|..-|-....+|+. -..++.
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st-----------------~~~Vr~l----Lqqy~~~~~~i~~le~~~~~~l~ 66 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDST-----------------ALKVRKL----LQQYDIYRTAIDILEYSNHKQLQ 66 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhH-----------------HHHHHHH----HHHHHHHHHHHHHHHccChHHHH
Confidence 55666667777777766664444433333 2233333 2233334433333322 123455
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhHHHHHHH
Q 002247 522 ELKRELDKQAQEFEDDIDAVTHAKTEQEQRA 552 (947)
Q Consensus 522 sLekELe~Qaq~fe~dl~a~~~~~~EqEqRa 552 (947)
.+..||..=...++.++..|...=...+.|.
T Consensus 67 ~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI 97 (258)
T PF15397_consen 67 QAKAELQEWEEKEESKLSKLQQQLEQLDAKI 97 (258)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555444444443
No 235
>smart00338 BRLZ basic region leucin zipper.
Probab=62.30 E-value=21 Score=31.00 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhh
Q 002247 420 QKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQ 458 (947)
Q Consensus 420 qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~ 458 (947)
+.|.+|.+++..+..+++.|..++.+|...+..|++.|.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666667777777888888888888888888887654
No 236
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=61.95 E-value=5e+02 Score=34.34 Aligned_cols=181 Identities=17% Similarity=0.227 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHH--HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHh
Q 002247 596 MKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSD--QLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKH 673 (947)
Q Consensus 596 ~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~--q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~ 673 (947)
-++..|--+||..-+.||..+..+.+-|..+++..+.-..+-.. +-..+..-|+.| +.|-+=.+ -++| ....
T Consensus 177 l~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l----~~k~~~v~-y~~~-~~ey 250 (1072)
T KOG0979|consen 177 LQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELL----EKKKKWVE-YKKH-DREY 250 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccccc-hHhh-hHHH
Confidence 34556667777777777777777777666665544422222111 111111222222 01111111 1122 2234
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 674 EALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 674 ~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
.+.-..-..+|+++.+|.++.-.+ +.. ..++ ..++.++.++|..+..+.-....-+...-.
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi---------~~~---~eeL-------e~~~~et~~~~s~~~~~~~e~~~k~~~~~e 311 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPI---------EDK---KEEL-------ESEKKETRSKISQKQRELNEALAKVQEKFE 311 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh---------hhh---hhhH-------HhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666665533332 111 1111 115556666665555555444444333222
Q ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhH
Q 002247 754 LKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKK 808 (947)
Q Consensus 754 ~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE 808 (947)
-=++.+..+..+.-.++.|+-+-. .-+...++.+|-|.++.++|..-+
T Consensus 312 k~~~~~~~v~~~~~~le~lk~~~~-------~rq~~i~~~~k~i~~~q~el~~~~ 359 (1072)
T KOG0979|consen 312 KLKEIEDEVEEKKNKLESLKKAAE-------KRQKRIEKAKKMILDAQAELQETE 359 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhcC
Confidence 223444444444444444444333 234455666777777777766543
No 237
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.90 E-value=88 Score=33.88 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=61.5
Q ss_pred HHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q 002247 732 KKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEI 811 (947)
Q Consensus 732 ~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~ 811 (947)
......-.-...+++..+...-.+.+....++.|..+++.|+.+...+...+..-+.+.+.|+.|+-+++.-...-..-+
T Consensus 28 ~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 28 QVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445556666666667777777788888888888888888888888888888888888877776666555555
Q ss_pred hhhhhhccc
Q 002247 812 NRTGKGLKK 820 (947)
Q Consensus 812 ~~~ek~lk~ 820 (947)
..+-..|+.
T Consensus 108 ~~m~~~L~~ 116 (251)
T PF11932_consen 108 EQMIDELEQ 116 (251)
T ss_pred HHHHHHHHH
Confidence 555555544
No 238
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=61.85 E-value=3.2e+02 Score=34.37 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH
Q 002247 543 HAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDE 622 (947)
Q Consensus 543 ~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~nee 622 (947)
-.-..|-++++--|..|---|-+-..|-|-||+|+-+.+ +=|.--++-++|+|+|.....-||.--....+.
T Consensus 132 eqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrt--------sLETqKlDLmaevSeLKLkltalEkeq~e~E~K 203 (861)
T KOG1899|consen 132 EQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRT--------SLETQKLDLMAEVSELKLKLTALEKEQNETEKK 203 (861)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhh--------hHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 333456667777777777777777788889999876552 345666888999999999988888665555555
Q ss_pred Hhh
Q 002247 623 LSL 625 (947)
Q Consensus 623 L~~ 625 (947)
+|.
T Consensus 204 ~R~ 206 (861)
T KOG1899|consen 204 LRL 206 (861)
T ss_pred HHh
Confidence 554
No 239
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=61.62 E-value=73 Score=33.12 Aligned_cols=101 Identities=27% Similarity=0.309 Sum_probs=62.7
Q ss_pred HHHHHhhHHHHHHhhhhhhccc-----hhhhhhhhhhhhhHHHHHHHHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHH
Q 002247 364 LILAVKDLNEMLEQKNMEISSL-----SSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAED 438 (947)
Q Consensus 364 LvlavqDLEemLEqk~~EIs~l-----s~~~~e~~n~d~~q~~le~Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~ 438 (947)
-+++++-=|++||.+++++-+- +..-.+.+-=.....+|+.++ .+--+|+.+++.||.-...++.-...-+-.
T Consensus 32 als~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~--dP~RkEv~~vRkkID~vNreLkpl~~~cqK 109 (159)
T PF04949_consen 32 ALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLA--DPMRKEVEMVRKKIDSVNRELKPLGQSCQK 109 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5788889999999999988751 110011110012233333322 223578899999999888888776555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 002247 439 LEIYIKQLTEDCQVLEQENQCLTSKLEK 466 (947)
Q Consensus 439 Le~kmeQLe~Dye~LkqEN~dls~KLeq 466 (947)
=+.-+.+.-.-|++..+|--.|+.+|-+
T Consensus 110 KEkEykealea~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 110 KEKEYKEALEAFNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666777777776666666543
No 240
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=61.06 E-value=3.8e+02 Score=32.63 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=23.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 002247 669 EAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG 701 (947)
Q Consensus 669 ~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~ 701 (947)
+..-..+|.++|..|+.-+.+|..+-.+|...-
T Consensus 163 ~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 163 EAQERHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444457778888888888888877777775433
No 241
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=60.78 E-value=4.4e+02 Score=33.77 Aligned_cols=38 Identities=32% Similarity=0.596 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 002247 488 LESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDK 529 (947)
Q Consensus 488 Le~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~ 529 (947)
|..-|+.|.++. -.+||+...+. .|+..+..|..|+.+
T Consensus 460 L~e~IeKLk~E~---d~e~S~A~~~~-gLk~kL~~Lr~E~sK 497 (762)
T PLN03229 460 LNEMIEKLKKEI---DLEYTEAVIAM-GLQERLENLREEFSK 497 (762)
T ss_pred HHHHHHHHHHHH---HHHHHHhhhhh-hHHHHHHHHHHHHHh
Confidence 344444444443 23455555554 455555555555554
No 242
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=60.41 E-value=29 Score=32.50 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=50.0
Q ss_pred eeeeeccccCc-ccc-----eEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec-
Q 002247 19 QFQCNQVPKLK-KSA-----VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST- 91 (947)
Q Consensus 19 qFhAtQVP~~g-wdk-----L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~- 91 (947)
-+.|.++|... +.. .-|++.|.+ +...|| +..-++-++.|...+.=. ...+....+..+|.|..
T Consensus 20 v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~~~~T-~v~~~~~~P~wne~f~f~------i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 20 LIKARNLPPRTKDVAHCDPFVKVCLLPDE--RRSLQS-KVKRKTQNPNFDETFVFQ------VSFKELQRRTLRLSVYDV 90 (123)
T ss_pred EEEecCCCCccCCCCCCCcEEEEEEeeCC--CCceEe-eeEcCCCCCccceEEEEE------cCHHHhcccEEEEEEEEC
Confidence 56777887642 211 334555644 222332 222223334444432111 22233445566776663
Q ss_pred -cCCccccccceecchhhhhcccCCcccccccc
Q 002247 92 -GSSKSGFLGEASIDFADFAAETEPLTLSLPLK 123 (947)
Q Consensus 92 -GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk 123 (947)
+.++..++|++.|.|++.... ....+-+||.
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~-~~~~~w~~L~ 122 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLV-KGGVVWRDLE 122 (123)
T ss_pred CcCCCCcEEEEEEEeccceecC-CCceEEEeCC
Confidence 445789999999999887663 3444666653
No 243
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=60.29 E-value=2.1e+02 Score=29.43 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHhhhh
Q 002247 598 AMTEANEQRMQKAHLEEMLQKANDELSLIK 627 (947)
Q Consensus 598 A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~ 627 (947)
.-++.+.+|..+..|-.-+.++...|+...
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke 33 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKE 33 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999988888743
No 244
>PF15294 Leu_zip: Leucine zipper
Probab=59.58 E-value=1.2e+02 Score=34.39 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=20.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhh
Q 002247 672 KHEALSTEIHMLRTEIEKLRKEQYNL 697 (947)
Q Consensus 672 ~~~~~s~ei~~Lkaeie~L~~e~~~L 697 (947)
....+..||..|++|+++|+.-.-.+
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~l 151 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSL 151 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668999999999999999744444
No 245
>PRK11519 tyrosine kinase; Provisional
Probab=59.10 E-value=2.9e+02 Score=34.68 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=48.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002247 433 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLIS 512 (947)
Q Consensus 433 kke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~t 512 (947)
.+....++.++++.+..++.+++.|--+.. ..|-.+.+..+.++++|+..++.++.+....|.+.--.
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~------------~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~ 340 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQDKDSVDL------------PLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPA 340 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH
Confidence 334444444555555555555554432221 11222344556788888888888888877888887777
Q ss_pred HHHHHHHHHHHHHHH
Q 002247 513 INELECQVKELKREL 527 (947)
Q Consensus 513 I~~Le~q~~sLekEL 527 (947)
|-.|..+..+|++++
T Consensus 341 v~~l~~~~~~L~~~~ 355 (719)
T PRK11519 341 YRTLLEKRKALEDEK 355 (719)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766665554443
No 246
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.06 E-value=79 Score=34.04 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=19.6
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHhhhhhhhh
Q 002247 602 ANEQRMQKAHLEEMLQKANDELSLIKDQNG 631 (947)
Q Consensus 602 a~eLR~qk~~LEe~Lqk~neeL~~~~~~~e 631 (947)
-..+|.+...||.-|.++..+|..+..++.
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344566667777777777777777665544
No 247
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=58.79 E-value=83 Score=30.79 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCCCCchhhhchhHHHHhhhhhh
Q 002247 764 NLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKK 843 (947)
Q Consensus 764 ~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~gr~~~~tk~~~~nk~~~~~i~ 843 (947)
.|-.|+--||+|..-||.-+.+++.--..|+.++-.-+..|.+.+.++.++ +-+|..|...+.
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL-----------------~FrN~QL~kRV~ 64 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSL-----------------TFRNQQLTKRVE 64 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Confidence 466889999999999999999998877777777776666777776665554 126788888888
Q ss_pred hhhhhhhhchh
Q 002247 844 LNKAELETSDN 854 (947)
Q Consensus 844 ~~e~~~e~s~~ 854 (947)
.+..+++.+.+
T Consensus 65 ~LQ~El~~~~~ 75 (102)
T PF10205_consen 65 VLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHhhc
Confidence 77777775443
No 248
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=58.77 E-value=16 Score=35.27 Aligned_cols=93 Identities=17% Similarity=0.301 Sum_probs=53.0
Q ss_pred eeeeccccC----c-ccc-eEEEeeeCCCCCccccccccccccC--ccccCccchhhheecccCCccccccceeeeeeec
Q 002247 20 FQCNQVPKL----K-KSA-VMISLVPDDVGKPTFKLEKVPVQNG--TCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST 91 (947)
Q Consensus 20 FhAtQVP~~----g-wdk-L~vSiVp~DtGK~TaKs~KA~VrnG--~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~ 91 (947)
.+|-.+|.. | +|. .-|+++|.+......|| .|..+ +..|...+.=. ....++.+....|-|.-
T Consensus 22 i~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT---~v~~~t~nP~wnE~f~f~------i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 22 KECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKT---SIKRNTTNPVYNETLKYS------ISHSQLETRTLQLSVWH 92 (125)
T ss_pred EEecCCCccCCCCCCCCcEEEEEEEcCCccccceEe---eeeeCCCCCcccceEEEE------CCHHHhCCCEEEEEEEE
Confidence 456666642 1 333 23466787653333344 24444 44465543211 22234566667777762
Q ss_pred --cCCccccccceecchhhhhcccCCccccccc
Q 002247 92 --GSSKSGFLGEASIDFADFAAETEPLTLSLPL 122 (947)
Q Consensus 92 --GSSkSgiLGEasINlAdYa~a~kp~tVSLPL 122 (947)
+.++..+||++.|.+++|.-. .....-+||
T Consensus 93 ~~~~~~~~~lG~~~i~l~~~~~~-~~~~~w~~l 124 (125)
T cd04029 93 YDRFGRNTFLGEVEIPLDSWNFD-SQHEECLPL 124 (125)
T ss_pred CCCCCCCcEEEEEEEeCCccccc-CCcccEEEC
Confidence 446888999999999998653 445566665
No 249
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=58.60 E-value=4.6e+02 Score=32.82 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=24.8
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHh
Q 002247 756 GENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLE 789 (947)
Q Consensus 756 dekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~E 789 (947)
...+..+..|+.+++..+..|..|-..+-+....
T Consensus 372 ~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 372 GEQQVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888888887777654433
No 250
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=58.56 E-value=2.7e+02 Score=30.19 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH-hHHHHhhhhhhhhccHHHHHHHHHHH
Q 002247 566 NTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQK-ANDELSLIKDQNGVKLQELSDQLEQK 644 (947)
Q Consensus 566 na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk-~neeL~~~~~~~e~kl~eL~~q~d~K 644 (947)
.+..+.+|-+++.+|...+..--..+|........+..++......=++.+|. +-+||.++++. |.......
T Consensus 148 E~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~-------l~~e~~~R 220 (247)
T PF06705_consen 148 EENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNA-------LALESQER 220 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 35567899999999999999999999999999999999998877777788877 99999998874 34445555
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 002247 645 DKQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 645 ~k~ie~m~~el~~kSkqle 663 (947)
...=+.+++-|..-.+-|+
T Consensus 221 ~~~Dd~Iv~aln~yt~~lQ 239 (247)
T PF06705_consen 221 EQSDDDIVQALNHYTKALQ 239 (247)
T ss_pred HhhhhHHHHHHHHHHHHHH
Confidence 5554555666655555555
No 251
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=58.29 E-value=19 Score=36.36 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=34.3
Q ss_pred ccccccceecchhhhhcccCCccccccc-----ccCCCCCeeeeeeee
Q 002247 95 KSGFLGEASIDFADFAAETEPLTLSLPL-----KFANSGAVLHVTIEK 137 (947)
Q Consensus 95 kSgiLGEasINlAdYa~a~kp~tVSLPL-----k~cnsGtvLHVtIQ~ 137 (947)
...++|.|+|.+++... ..+....+|| +.+..|+-|||.+|.
T Consensus 111 ~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 111 GAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred CCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 45799999999999875 5566777888 456688999999985
No 252
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=57.74 E-value=3.7e+02 Score=33.78 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=54.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 002247 429 IQFFKKHAEDLEIYIKQLTEDCQVLEQEN--QCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEY 506 (947)
Q Consensus 429 ie~ykke~E~Le~kmeQLe~Dye~LkqEN--~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~ef 506 (947)
++-..++...|+.++++.+...+.+++.| .++ ..|-...+..+.+|+.|+..+...+.+....|
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~--------------~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~ 334 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDL--------------NLEAKAVLEQIVNVDNQLNELTFREAEISQLY 334 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555556666666666666655 222 12222344567888888888888777778888
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 002247 507 SESLISINELECQVKELKREL 527 (947)
Q Consensus 507 Se~l~tI~~Le~q~~sLekEL 527 (947)
.+.--.|..|..++..|++++
T Consensus 335 ~~~hP~v~~l~~~~~~L~~~~ 355 (726)
T PRK09841 335 KKDHPTYRALLEKRQTLEQER 355 (726)
T ss_pred cccCchHHHHHHHHHHHHHHH
Confidence 888888888888776665543
No 253
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=57.06 E-value=4.2e+02 Score=31.97 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHH
Q 002247 568 VTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQ 647 (947)
Q Consensus 568 ~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ 647 (947)
.....++.||..+-.++...-..--.-...-..|...||.+-.- ++ -. +-..+++..+..|..-+=.|..+
T Consensus 337 ~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~------~~--~~-s~~~elE~rl~~lt~~Li~KQ~~ 407 (511)
T PF09787_consen 337 AELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSA------RA--SS-SSWNELESRLTQLTESLIQKQTQ 407 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH------Hh--cc-CCcHhHHHHHhhccHHHHHHHHH
Confidence 34445666666665555544444444444445555555554332 11 00 11234555666666555566666
Q ss_pred HHHHHHHHhhhhhhhh
Q 002247 648 IQKMYLELDHSSSQLI 663 (947)
Q Consensus 648 ie~m~~el~~kSkqle 663 (947)
||.+.-|=-...=||+
T Consensus 408 lE~l~~ek~al~lqlE 423 (511)
T PF09787_consen 408 LESLGSEKNALRLQLE 423 (511)
T ss_pred HHHHHhhhhhccccHH
Confidence 6666544333333443
No 254
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=56.76 E-value=5.5e+02 Score=33.58 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=15.1
Q ss_pred chhhHHHHHHHHHHhhHHHHHH
Q 002247 412 DKEVDMLKQKIRDQGDEIQFFK 433 (947)
Q Consensus 412 ~~E~~~L~qKI~dL~~Eie~yk 433 (947)
.-++..|+..|.-|..|+-.++
T Consensus 329 ~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 329 SFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4577777777777777666654
No 255
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.74 E-value=2.1e+02 Score=28.34 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 002247 634 LQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG 701 (947)
Q Consensus 634 l~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~ 701 (947)
|..|..++..-...+..+-.+++.+...|...+..=++.-..|-.||..++..++-|...+..|..+.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666677766666677777888899999999998888777776654
No 256
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=56.60 E-value=17 Score=34.20 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=27.0
Q ss_pred cccceeeeeee--ccCCccccccceecchhhhhcccCCccccccc
Q 002247 80 IKEKIYHFIVS--TGSSKSGFLGEASIDFADFAAETEPLTLSLPL 122 (947)
Q Consensus 80 ~~e~iykfvVs--~GSSkSgiLGEasINlAdYa~a~kp~tVSLPL 122 (947)
+..+..+|-|- -..++..+||++.|.++++.. ..+.+.=.||
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l 123 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL-TEEQTFWKDL 123 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC-CCCcceEEec
Confidence 34455666664 245577899999999998764 4444433333
No 257
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=56.57 E-value=5.8e+02 Score=33.39 Aligned_cols=252 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhcc---c
Q 002247 245 SDGSVEKLKNEIAVMMRQVELS-------ELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNS---I 314 (947)
Q Consensus 245 se~~iE~LK~E~~~L~R~ad~s-------~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k---~ 314 (947)
++.......+|+..|..-.-.+ -+++=+.=|-|.+.-+...+|..+|..|+.||+++-.-.+.|-.... +
T Consensus 583 ~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~ 662 (984)
T COG4717 583 AEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFI 662 (984)
T ss_pred HHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q ss_pred cHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhh
Q 002247 315 DIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKL 394 (947)
Q Consensus 315 ~~~~~~~~lq~e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n 394 (947)
+..-.-...+.....-...++-|-.+.=-+. .|-|.|++|--.++-- +++|++|- ..-...+
T Consensus 663 ~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~----------~t~El~~~L~ae~~~~-------~kei~dLf-d~~~~~~ 724 (984)
T COG4717 663 DLSTLFCVQRLRVAAELQKEEARLALEGNIE----------RTKELNDELRAELELH-------RKEILDLF-DCGTADT 724 (984)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHhhhHH----------HHHHHHHHHHHHHHHH-------HHHHHHHH-hhcccCc
Q ss_pred hhhhHHHHHHHHhhcCCchhhHHHHHHHH-------HHhhHHHHH---HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 002247 395 VREDQLALEALAKERNKDKEVDMLKQKIR-------DQGDEIQFF---KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKL 464 (947)
Q Consensus 395 ~d~~q~~le~Lvk~~~~~~E~~~L~qKI~-------dL~~Eie~y---kke~E~Le~kmeQLe~Dye~LkqEN~dls~KL 464 (947)
.|..-.+...---.......+..+...+- +|......- .++.-.|+..++.+..+|++|-.-=-.++..+
T Consensus 725 ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi 804 (984)
T COG4717 725 EDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQI 804 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 002247 465 EKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRE 526 (947)
Q Consensus 465 eq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekE 526 (947)
++-+-.. ++++|.-+-++|-.+|++-.+.+..-..-+..++..|+.+.+.
T Consensus 805 ~~lE~g~------------~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~ 854 (984)
T COG4717 805 AQLEGGG------------TVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKER 854 (984)
T ss_pred HHHhcCC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 258
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.40 E-value=5.3e+02 Score=32.85 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=11.1
Q ss_pred CcccceEEEeeeCCCCCc
Q 002247 28 LKKSAVMISLVPDDVGKP 45 (947)
Q Consensus 28 ~gwdkL~vSiVp~DtGK~ 45 (947)
.|-..++|-.+|.-.|+.
T Consensus 102 ~G~~~v~V~~LP~r~g~~ 119 (717)
T PF10168_consen 102 VGPRGVVVLELPRRWGKN 119 (717)
T ss_pred EcCCcEEEEEeccccCcc
Confidence 355666777777665543
No 259
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=56.26 E-value=6.2e+02 Score=33.65 Aligned_cols=238 Identities=18% Similarity=0.206 Sum_probs=110.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEY----SESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEE 558 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~ef----Se~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeea 558 (947)
.-|.++=..+++|-.+|..-+... ++.-|+. ....-+++..|.+.++..++++...=........ .
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~------~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~----~ 473 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQ------EEKEKKEMAEQIEELEEELENLEKQLKDLTELYM----N 473 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h
Confidence 556777788888888887655432 2333321 1112222333333333333333322222222221 0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHH
Q 002247 559 LRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELS 638 (947)
Q Consensus 559 Lrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~ 638 (947)
.-.++-...-..+.|++.+..-..+|.++.++...+-.. +.+..+..-+--..|.++.+.+.+|+.--+..-.-++.|-
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~-l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~ 552 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT-LKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLF 552 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222234555555555555666655555544333 5666666666666666666665555543333333333222
Q ss_pred HHHHH----------------------------------------HHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHH
Q 002247 639 DQLEQ----------------------------------------KDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALST 678 (947)
Q Consensus 639 ~q~d~----------------------------------------K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ 678 (947)
..+|. =.....+|..-+..+++..++.+.+...-..-++.
T Consensus 553 ~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~ 632 (1041)
T KOG0243|consen 553 EKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSE 632 (1041)
T ss_pred HHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHH
Confidence 22221 11222233333444455666666544433344445
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHH
Q 002247 679 EIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFA 735 (947)
Q Consensus 679 ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia 735 (947)
=|+++...++.|++....-++-. ...+-.++...+..++.....-+.+...|.
T Consensus 633 ~~e~~q~~~~~~k~~~~s~l~~i----~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 685 (1041)
T KOG0243|consen 633 VLESLQQLQEVLKKDSESCLEVI----NSSITSSINELESMLETIANTADDLLQNIS 685 (1041)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH----hccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555433311111 122334566666667776666666666653
No 260
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.78 E-value=97 Score=33.36 Aligned_cols=18 Identities=6% Similarity=0.182 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHHHHhhh
Q 002247 735 ASAKQEAAKAHEELISMR 752 (947)
Q Consensus 735 a~lk~Ea~~~~~eL~~~k 752 (947)
.-+++|+..++.+|+++.
T Consensus 96 p~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 96 PDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 261
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.76 E-value=2.7e+02 Score=29.35 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=19.8
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002247 630 NGVKLQELSDQLEQKDKQIQKMYLELDHSSSQL 662 (947)
Q Consensus 630 ~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkql 662 (947)
....++++...+.--.+.|++++-++++.-.+.
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a 42 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKA 42 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666677777766664443333
No 262
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=55.30 E-value=20 Score=35.26 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=42.9
Q ss_pred cCccccCccchhhheecccCC-------ccccccceeeeeeec--cCCccccccceecchhhhhcccCCcccccccccC
Q 002247 56 NGTCLWENPIYVTVKLIREPK-------TGYIKEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFA 125 (947)
Q Consensus 56 nG~C~W~dpIyEtvkl~qD~~-------s~~~~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~c 125 (947)
+-+..|...++=.+....+.. ...+.....+|.|.- +..+..++|++.|.+.+... ..+...-+||...
T Consensus 44 t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~ 121 (137)
T cd08675 44 TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR 121 (137)
T ss_pred CCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence 335566665555544332211 123355567777763 33589999999999999874 4566777777764
No 263
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.02 E-value=3.9e+02 Score=30.89 Aligned_cols=287 Identities=18% Similarity=0.259 Sum_probs=163.5
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH
Q 002247 478 CIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEE 557 (947)
Q Consensus 478 cSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aee 557 (947)
.+++.++...|..-+.+|.++.+....+.-.. .-++..+..++.+|-.+.+.--.+|.+-|+
T Consensus 15 ~~~S~~t~~~l~~~~~sL~qen~~Lk~El~~e------------------k~~~~~L~~e~~~lr~~sv~~~~~aEqEEE 76 (310)
T PF09755_consen 15 TSSSSATREQLRKRIESLQQENRVLKRELETE------------------KARCKHLQEENRALREASVRIQAKAEQEEE 76 (310)
T ss_pred CCCCCCchHHHHHHHHHHHHHhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666544433322222 224445566666666666666666666666
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHH
Q 002247 558 ELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQEL 637 (947)
Q Consensus 558 aLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL 637 (947)
-+-.+=+++ ...|++|-..|...+- -+-|.+|-.=.+=...||..|..||..|..=++-+ -+.-..++..|
T Consensus 77 ~isN~LlKk---l~~l~keKe~L~~~~e---~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~---V~kL~k~i~~L 147 (310)
T PF09755_consen 77 FISNTLLKK---LQQLKKEKETLALKYE---QEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYL---VNKLQKKIERL 147 (310)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHH
Confidence 555554444 4457777776655432 34566777777788999999999999887643321 12233466677
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH-HHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchh
Q 002247 638 SDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEA-QKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGET 716 (947)
Q Consensus 638 ~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~-~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~ 716 (947)
..+...|...++++--|--+ ++|.-.++. ....-|-..+..|-++-..|.... ++..+.. --+..++..
T Consensus 148 e~e~~~~q~~le~Lr~EKVd----lEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l----~~~~s~~-~s~~d~~~~- 217 (310)
T PF09755_consen 148 EKEKSAKQEELERLRREKVD----LENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKL----EQPVSAP-PSPRDTVNV- 217 (310)
T ss_pred HHHHHHhHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccccCCC-CCcchHHhh-
Confidence 77776777777777665534 333333443 455677778888888888777632 2222221 112111110
Q ss_pred hhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHH
Q 002247 717 DMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQ 796 (947)
Q Consensus 717 e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kq 796 (947)
.+...+. +.+..-|..|..||..++.-|.......-.+ +.....+...++..---|+..|..+....|.|-.+
T Consensus 218 --~~~~Dt~--e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k---~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~ 290 (310)
T PF09755_consen 218 --SEENDTA--ERLSSHIRSLRQEVSRLRQQLAASQQEHSEK---MAQYLQEEKEIREENRRLQRKLQREVERREALCRH 290 (310)
T ss_pred --cccCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 2244556666666666666665443322222 22223444666666677777788777778888777
Q ss_pred HHHHHHHHHhhH
Q 002247 797 VFQLKDELQKKK 808 (947)
Q Consensus 797 v~qLk~eL~kkE 808 (947)
+.--++.|+--+
T Consensus 291 lsesEsslE~dd 302 (310)
T PF09755_consen 291 LSESESSLEMDD 302 (310)
T ss_pred HHHHHHHHhcch
Confidence 777776665443
No 264
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=54.87 E-value=4.6e+02 Score=31.70 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002247 573 LQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQ 617 (947)
Q Consensus 573 LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lq 617 (947)
+..=+..|+.-+..+...-|.++ +|=+-|+.|.-.|+.-|+
T Consensus 390 lE~rl~~lt~~Li~KQ~~lE~l~----~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 390 LESRLTQLTESLIQKQTQLESLG----SEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH----hhhhhccccHHHHHHHHH
Confidence 44555566666666666666555 467778888888887777
No 265
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=54.42 E-value=42 Score=34.43 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=47.7
Q ss_pred cccceeeeeee-ccC--CccccccceecchhhhhcccCCccccccccc--CCCCCeeeeeeeeccCCCCC
Q 002247 80 IKEKIYHFIVS-TGS--SKSGFLGEASIDFADFAAETEPLTLSLPLKF--ANSGAVLHVTIEKMDGATDQ 144 (947)
Q Consensus 80 ~~e~iykfvVs-~GS--SkSgiLGEasINlAdYa~a~kp~tVSLPLk~--cnsGtvLHVtIQ~L~~~s~~ 144 (947)
+..+-.+|-|. -|. .+-.++|+|.|+|+.+..... ..-++||.. -..|.=|||.|..-.|-++.
T Consensus 75 l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~ 143 (155)
T cd08690 75 FKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE-IHESVDLMDGRKATGGKLEVKVRLREPLTGK 143 (155)
T ss_pred ccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCc-ceEEEEhhhCCCCcCCEEEEEEEecCCCccc
Confidence 44566777775 443 578999999999999877553 555888773 34899999999987775543
No 266
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=54.26 E-value=3.9e+02 Score=30.75 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHH
Q 002247 723 WNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEV 769 (947)
Q Consensus 723 ~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~ 769 (947)
....-.-+++.++-++-|.--++.-|.....--|-+|.++-++|..+
T Consensus 212 ~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 212 YIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333445555555555555555555555444444555555555433
No 267
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.89 E-value=24 Score=29.49 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhh
Q 002247 435 HAEDLEIYIKQLTEDCQVLEQENQ 458 (947)
Q Consensus 435 e~E~Le~kmeQLe~Dye~LkqEN~ 458 (947)
|-+.|...-+-|..+|+.|.+||-
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~ 29 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENE 29 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 268
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.37 E-value=5.2e+02 Score=31.87 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHH
Q 002247 573 LQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMY 652 (947)
Q Consensus 573 LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~ 652 (947)
+.-+|++|---..|+.+.=++++.. .-...+=-.-.+||+-+..++..+..|.--|--.+..+-++...=..+- .
T Consensus 206 nrh~~erlk~~~~s~~e~l~kl~~E--qQlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~---~ 280 (613)
T KOG0992|consen 206 NRHLKERLKIVEESRLESLGKLNSE--QQLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQV---A 280 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH---H
Confidence 3356777777777777777777776 2356665667789999999988888877556555555544444333332 2
Q ss_pred HHHhhhhhhhh
Q 002247 653 LELDHSSSQLI 663 (947)
Q Consensus 653 ~el~~kSkqle 663 (947)
.++-++.++.+
T Consensus 281 ~e~~e~rk~v~ 291 (613)
T KOG0992|consen 281 EETTEKRKAVK 291 (613)
T ss_pred HHHHHHHHHHH
Confidence 24444444444
No 269
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=53.31 E-value=3.4e+02 Score=29.66 Aligned_cols=94 Identities=17% Similarity=0.237 Sum_probs=67.7
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHH-----hhH--HHHHHHHHHHHHHHHhhHhHHHHhhHH
Q 002247 720 IQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLI-----GNL--QAEVENLKVQQNKLQNSLIEEKLEKDN 792 (947)
Q Consensus 720 l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i-----~~L--~~E~e~Lk~q~~~Lk~sls~~~~EkE~ 792 (947)
+.+-+..++.|+.++...+.-...++.-|.......|+.+-.+ +.+ -..++.+.+|..+-||.--+.+...+.
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE 85 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555666666778887777 333 346889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHhh
Q 002247 793 LAKQVFQLKDELQKKKEEINR 813 (947)
Q Consensus 793 l~kqv~qLk~eL~kkE~~~~~ 813 (947)
-..+++=++|+|..-++....
T Consensus 86 VarkL~iiE~dLE~~eeraE~ 106 (205)
T KOG1003|consen 86 VARKLVIIEGELERAEERAEA 106 (205)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999887774433
No 270
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.05 E-value=4.9e+02 Score=31.48 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHHHhHhHHHHHHHHHhhhhcccccch
Q 002247 887 GNFTEVLMEVSLLKEKNKRMETELKEMQERYSEISLKFA 925 (947)
Q Consensus 887 ~~~~~~~~~~~~lk~r~~~~e~el~~m~~rys~~sl~fa 925 (947)
.-..+|=+++..||--|..+...=.++++.-+.+|++||
T Consensus 403 aRe~eleqevkrLrq~nr~l~eqneelngtilTls~q~l 441 (502)
T KOG0982|consen 403 AREIELEQEVKRLRQPNRILSEQNEELNGTILTLSTQFL 441 (502)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhhhhhhhhhHHHHHH
Confidence 334567778888888888888888888888888888876
No 271
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=52.95 E-value=37 Score=31.32 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=45.3
Q ss_pred EEEeeeeeccccCcccc-----eEEEeeeCC-CCCccccccccccccCccccCccchhhheec-ccCCccccccceeeee
Q 002247 16 FKLQFQCNQVPKLKKSA-----VMISLVPDD-VGKPTFKLEKVPVQNGTCLWENPIYVTVKLI-REPKTGYIKEKIYHFI 88 (947)
Q Consensus 16 FklqFhAtQVP~~gwdk-----L~vSiVp~D-tGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~-qD~~s~~~~e~iykfv 88 (947)
-.+++.|..+|...+.. +.|++.+.+ ......||. ..-.+-++.|. + ..|. .+...+.. .....|-
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~-vi~~t~nP~Wn-~----f~~~~~~l~~~~~-~~~l~~~ 75 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTE-VIKNTLNPVWK-P----FTIPLQKLCNGDY-DRPIKIE 75 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeee-EeccCCCCceE-E----EEEEHHHhcCCCc-CCEEEEE
Confidence 45788999998765432 233343333 222233332 22223344455 2 2221 11111111 2344555
Q ss_pred ee--ccCCccccccceecchhhhh
Q 002247 89 VS--TGSSKSGFLGEASIDFADFA 110 (947)
Q Consensus 89 Vs--~GSSkSgiLGEasINlAdYa 110 (947)
|- -..++..++|.+++.+++..
T Consensus 76 V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 76 VYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred EEEeCCCCCCcEEEEEEEEHHHHh
Confidence 53 24457799999999999988
No 272
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=52.38 E-value=3.2e+02 Score=33.54 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh-------HHHHhhHHHHHH
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI-------EEKLEKDNLAKQ 796 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls-------~~~~EkE~l~kq 796 (947)
-.+...++-.+.++.+|.+..-.+|+........+...|..++.++..++-+.++|..-|- +..+|.+.|+.|
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455667777788888888888888888888888888888888888888888888877765 667788888888
Q ss_pred HHHHHHHHHhhHHHHhh
Q 002247 797 VFQLKDELQKKKEEINR 813 (947)
Q Consensus 797 v~qLk~eL~kkE~~~~~ 813 (947)
-..+.+.+.--|+++..
T Consensus 284 yAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 284 YAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888887777776554
No 273
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=52.14 E-value=21 Score=35.85 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=58.1
Q ss_pred eeeeeccccCcccceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee--ccCCcc
Q 002247 19 QFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--TGSSKS 96 (947)
Q Consensus 19 qFhAtQVP~~gwdkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GSSkS 96 (947)
-..|..+|.... .-.=.+|.+..|..+.||. ..-++-++.|..++.=++ .++ ....+|-|. -..++-
T Consensus 8 Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~-vvk~t~nP~WnE~f~f~i---~~~------~~~l~~~V~D~d~~~~d 76 (145)
T cd04038 8 VVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTR-VIKKNLNPVWNEELTLSV---PNP------MAPLKLEVFDKDTFSKD 76 (145)
T ss_pred EEeeECCCCCCC-CCcCcEEEEEECCEEEEee-eEcCCCCCeecccEEEEe---cCC------CCEEEEEEEECCCCCCC
Confidence 346666665332 1111123333466666544 445566777776543332 233 345567665 245667
Q ss_pred ccccceecchhhhhcccCCcccccccccCCCCCeee
Q 002247 97 GFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLH 132 (947)
Q Consensus 97 giLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLH 132 (947)
.++|.|.|++.+++++.+.. +|..-..||++-
T Consensus 77 d~iG~a~i~l~~l~~~~~~~----~~~~~~~~~~~~ 108 (145)
T cd04038 77 DSMGEAEIDLEPLVEAAKLD----HLRDTPGGTQIK 108 (145)
T ss_pred CEEEEEEEEHHHhhhhhhhh----ccccCCCCEEEE
Confidence 89999999999999876653 255556788655
No 274
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=51.81 E-value=4.6e+02 Score=30.85 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=12.3
Q ss_pred HHhhHHHHHHHHHHHHHHHhhHHHH
Q 002247 787 KLEKDNLAKQVFQLKDELQKKKEEI 811 (947)
Q Consensus 787 ~~EkE~l~kqv~qLk~eL~kkE~~~ 811 (947)
..+....+.++..++..|.+-++.+
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544443
No 275
>PRK11020 hypothetical protein; Provisional
Probab=51.72 E-value=26 Score=34.76 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhhhhhhh-hhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhh-hhhhc
Q 002247 648 IQKMYLELDHSSSQLID-EHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN-LSEHG 701 (947)
Q Consensus 648 ie~m~~el~~kSkqle~-~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~-L~e~~ 701 (947)
|+++.+-||.-..++.. ..+.+.+++..|..||+-|.++|+.|+.-+.. |+..+
T Consensus 7 iq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~ 62 (118)
T PRK11020 7 IKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEA 62 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333332 34667889999999999999999998865443 44443
No 276
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=51.57 E-value=51 Score=28.08 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=47.1
Q ss_pred eeeeeccccCcc---cceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeeccCC-
Q 002247 19 QFQCNQVPKLKK---SAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVSTGSS- 94 (947)
Q Consensus 19 qFhAtQVP~~gw---dkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~GSS- 94 (947)
-+.|..+|...+ ...||.+-....|..+++|. ..=.+++..|...+.-.+.. +. .....|.|....+
T Consensus 6 i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~-~~~~~~~P~w~e~~~~~~~~---~~-----~~~l~i~v~~~~~~ 76 (101)
T smart00239 6 IISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTK-VVKNTLNPVWNETFEFEVPP---PE-----LAELEIEVYDKDRF 76 (101)
T ss_pred EEEeeCCCCCCCCCCCCceEEEEEeCCccceEeee-EecCCCCCcccceEEEEecC---cc-----cCEEEEEEEecCCc
Confidence 445666666544 44555554443331233332 22223367777654433321 11 4455677765443
Q ss_pred -ccccccceecchhhhhccc
Q 002247 95 -KSGFLGEASIDFADFAAET 113 (947)
Q Consensus 95 -kSgiLGEasINlAdYa~a~ 113 (947)
+...+|.+.|.++++....
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 4789999999999887654
No 277
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.33 E-value=2.7e+02 Score=29.72 Aligned_cols=84 Identities=23% Similarity=0.222 Sum_probs=54.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhh
Q 002247 728 DDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKK 807 (947)
Q Consensus 728 ~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kk 807 (947)
-.+...-.-+..+...+...+..-..+++++|..|..|...+..|+.+...++-.. +..-+.|.+|+++..+-
T Consensus 99 L~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~k-------e~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 99 LSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKK-------EAKDKEISRLKSEAEAL 171 (190)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33333345555666666666666666788889999999999998888877776544 34445556666666555
Q ss_pred HHHHhhhhhhc
Q 002247 808 KEEINRTGKGL 818 (947)
Q Consensus 808 E~~~~~~ek~l 818 (947)
.+++.+++-++
T Consensus 172 ~~~~~~~e~~F 182 (190)
T PF05266_consen 172 KEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 278
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=51.30 E-value=33 Score=32.35 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=44.0
Q ss_pred eeeeeccccCcccc---eEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--cC
Q 002247 19 QFQCNQVPKLKKSA---VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--GS 93 (947)
Q Consensus 19 qFhAtQVP~~gwdk---L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--GS 93 (947)
-+.|-.+|...+.. -||.|- .|....||. ..-.+.++.|...+.=.+. ++. .....|.|-- ..
T Consensus 6 vi~a~~L~~~d~~~~~DPyv~v~---~~~~~~kT~-v~~~t~nP~Wne~f~f~~~---~~~-----~~~l~~~v~d~~~~ 73 (123)
T cd04025 6 VLEARDLAPKDRNGTSDPFVRVF---YNGQTLETS-VVKKSCYPRWNEVFEFELM---EGA-----DSPLSVEVWDWDLV 73 (123)
T ss_pred EEEeeCCCCCCCCCCcCceEEEE---ECCEEEece-eecCCCCCccCcEEEEEcC---CCC-----CCEEEEEEEECCCC
Confidence 45666777654432 244333 244444442 3334555666554432222 111 3455666652 23
Q ss_pred Cccccccceecchhhhhc
Q 002247 94 SKSGFLGEASIDFADFAA 111 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~ 111 (947)
++..++|.+.|++++...
T Consensus 74 ~~~~~iG~~~~~l~~l~~ 91 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQ 91 (123)
T ss_pred CCCcEeEEEEEEHHHccc
Confidence 456899999999999865
No 279
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.01 E-value=3.2e+02 Score=28.80 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 002247 420 QKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQ 470 (947)
Q Consensus 420 qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q 470 (947)
..+..+...++.+....+.|+..+.+|+..|..++..=-.+..+..-.+.+
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~ 148 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQ 148 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444555555555555555555554333333344333333
No 280
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=50.62 E-value=1.9e+02 Score=36.01 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=8.0
Q ss_pred CCCCchhHHHHHH
Q 002247 242 NLGSDGSVEKLKN 254 (947)
Q Consensus 242 ~L~se~~iE~LK~ 254 (947)
-.|+.++++++.+
T Consensus 297 Vtp~P~~V~KiAa 309 (652)
T COG2433 297 VTPAPETVKKIAA 309 (652)
T ss_pred CCCChHHHHHHHH
Confidence 3345577888763
No 281
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=50.26 E-value=3.1e+02 Score=31.06 Aligned_cols=131 Identities=24% Similarity=0.348 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHH---------------------
Q 002247 676 LSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKF--------------------- 734 (947)
Q Consensus 676 ~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~i--------------------- 734 (947)
++.+|+-||..-++|+. -.+.+.|++ .-+=+.+.....|-+++.+.|
T Consensus 106 l~d~i~nLk~se~~lkq----Q~~~a~RrE--------~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDP 173 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQ----QQQEAARRE--------NILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDP 173 (330)
T ss_pred hHHHHHhhHHHHHHHHH----HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhCh
Q ss_pred -------------HhHHHHHHHHHHHHHhhhcccc-------------------------------hhHHHHhhHHHHHH
Q 002247 735 -------------ASAKQEAAKAHEELISMRSLKG-------------------------------ENEMLIGNLQAEVE 770 (947)
Q Consensus 735 -------------a~lk~Ea~~~~~eL~~~k~~kd-------------------------------ekE~~i~~L~~E~e 770 (947)
.-.++-.+.+++||...+|-.| ++|+-+-+-.+--+
T Consensus 174 Ainl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~se 253 (330)
T KOG2991|consen 174 AINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSE 253 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q 002247 771 NLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGL 818 (947)
Q Consensus 771 ~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~l 818 (947)
+||.+...|-+-+-+=.-+-|-|+.-|+=|...|+.+++++..+.|.+
T Consensus 254 Elkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 254 ELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
No 282
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=49.86 E-value=6.9e+02 Score=32.31 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=15.1
Q ss_pred HHHHhhHHHHHHHHHHhHHHHhh
Q 002247 603 NEQRMQKAHLEEMLQKANDELSL 625 (947)
Q Consensus 603 ~eLR~qk~~LEe~Lqk~neeL~~ 625 (947)
--||-.|++|=-.|.-.|..||-
T Consensus 390 QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 35666666666666666776665
No 283
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=49.81 E-value=3.8e+02 Score=29.27 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=29.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 002247 481 SLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELD 528 (947)
Q Consensus 481 ~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe 528 (947)
.++..-.+.+.++.+-.+|+.-...++.....|..++.++.+|..+++
T Consensus 15 ~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~ 62 (264)
T PF06008_consen 15 AWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVE 62 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666666666666666666665543
No 284
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.78 E-value=2.3e+02 Score=34.64 Aligned_cols=93 Identities=19% Similarity=0.344 Sum_probs=65.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002247 433 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLIS 512 (947)
Q Consensus 433 kke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~t 512 (947)
-...++|-.+++...--.-.+..|+-.+.-+|+..+...- ++...+.++...+.+|+.+|--.+.-|=+-+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~-------~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QL-- 489 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKE-------SLEEELKEANQNISRLQDELETTRRNYEEQL-- 489 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--
Confidence 3566666666666666666666666666668887655442 2344577778899999999998888776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002247 513 INELECQVKELKRELDKQAQEFE 535 (947)
Q Consensus 513 I~~Le~q~~sLekELe~Qaq~fe 535 (947)
+.|=.|+.+|++.|.+|...++
T Consensus 490 -s~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 490 -SMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456689999999988876543
No 285
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.08 E-value=3.2e+02 Score=33.04 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=6.5
Q ss_pred HHhhHHHHHHHHHH
Q 002247 787 KLEKDNLAKQVFQL 800 (947)
Q Consensus 787 ~~EkE~l~kqv~qL 800 (947)
+..+.-|+.||--|
T Consensus 434 d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 434 DEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHhH
Confidence 33344555555433
No 286
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=48.86 E-value=80 Score=29.74 Aligned_cols=59 Identities=25% Similarity=0.432 Sum_probs=36.4
Q ss_pred HhhHHHHHHHHHHHHHHHHhhHhHHHH---hhHHHHHHHHHHHHHHHhhHHHHhhhhhhccc
Q 002247 762 IGNLQAEVENLKVQQNKLQNSLIEEKL---EKDNLAKQVFQLKDELQKKKEEINRTGKGLKK 820 (947)
Q Consensus 762 i~~L~~E~e~Lk~q~~~Lk~sls~~~~---EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~ 820 (947)
-+.++.+++.|+++.+.+-..+..--. +.+.|..++-.++.++...|+.+..++.++..
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666553333 45566666777777777766666666655543
No 287
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=48.51 E-value=25 Score=33.73 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=55.5
Q ss_pred eeeeeccccCcccc---eEEEeeeCCCCCcc--ccccccccccCccccCccchhhheecccCCccccccceeeeeee--c
Q 002247 19 QFQCNQVPKLKKSA---VMISLVPDDVGKPT--FKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--T 91 (947)
Q Consensus 19 qFhAtQVP~~gwdk---L~vSiVp~DtGK~T--aKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~ 91 (947)
-..|..+|...+.. -||.|. .|... .||+ ..-.+-+..|..+++-.+. .+ ......|-|- -
T Consensus 6 Vi~a~~L~~~d~~g~~DPYv~v~---~~~~~~~~kT~-~v~~t~nP~Wne~f~f~~~---~~-----~~~~L~~~V~d~d 73 (124)
T cd04037 6 VVRARNLQPKDPNGKSDPYLKIK---LGKKKINDRDN-YIPNTLNPVFGKMFELEAT---LP-----GNSILKISVMDYD 73 (124)
T ss_pred EEECcCCCCCCCCCCCCcEEEEE---ECCeeccceee-EEECCCCCccceEEEEEec---CC-----CCCEEEEEEEECC
Confidence 46778887654332 233333 23322 2232 2223455666554433221 12 1244555554 2
Q ss_pred cCCccccccceecchhhhhcccCCcccccccccCCCCCeeee
Q 002247 92 GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHV 133 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHV 133 (947)
..++..++|.+.|++++..-.......-+|-..|..| +||+
T Consensus 74 ~~~~dd~iG~~~i~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 114 (124)
T cd04037 74 LLGSDDLIGETVIDLEDRFFSKHRATCGLPPTYEESG-PNQW 114 (124)
T ss_pred CCCCCceeEEEEEeecccccchHHHhccCCCcccccC-ceec
Confidence 3356789999999999987655566677777777444 4444
No 288
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.09 E-value=6.6e+02 Score=32.33 Aligned_cols=177 Identities=19% Similarity=0.242 Sum_probs=83.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhh-hhhhh
Q 002247 584 MASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDH-SSSQL 662 (947)
Q Consensus 584 m~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~-kSkql 662 (947)
|--....-|+--..|..|.---+--+.+||+.|-.-..+++. ++-|+-.|+.++..=-.++.+-.- ++. -.-+.
T Consensus 68 ~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq----~eekn~slqerLelaE~~l~qs~r-ae~lpevea 142 (916)
T KOG0249|consen 68 MEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQ----NEEKNRSLQERLELAEPKLQQSLR-AETLPEVEA 142 (916)
T ss_pred cccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhch----hHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHH
Confidence 444455555555666666655555666677776666666665 444555555555544443332211 100 00011
Q ss_pred hhhhhh------------HHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHH
Q 002247 663 IDEHKS------------EAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDL 730 (947)
Q Consensus 663 e~~~~~------------~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L 730 (947)
+.++|. .++...-+-.+++.+.++...... ..+ ...+--+--+...+.-|+.-..|+.+-
T Consensus 143 el~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarq----ree----mneeh~~rlsdtvdErlqlhlkermaA 214 (916)
T KOG0249|consen 143 ELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQ----REK----MNEEHNKRLSDTVDERLQLHLKERMAA 214 (916)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH----HHH----hhhhhccccccccHHHHHHHHHHHHHH
Confidence 111111 123333444455555555544432 111 111111222333445556666666666
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHH
Q 002247 731 EKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLK 773 (947)
Q Consensus 731 ~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk 773 (947)
.+.+..|-.|.+.+++-|..|+..|+..-.-+..|..++..|+
T Consensus 215 le~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 215 LEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666666666666666555444444444443333
No 289
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.08 E-value=4.4e+02 Score=31.95 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 002247 640 QLEQKDKQIQKMYLELDHSSSQLIDEH 666 (947)
Q Consensus 640 q~d~K~k~ie~m~~el~~kSkqle~~~ 666 (947)
|++...+-.|+-+.+++. .|++||+
T Consensus 329 qleSqr~y~e~~~~e~~q--sqlen~k 353 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQ--SQLENQK 353 (493)
T ss_pred hhhHHHHHHHHHHHHHHH--HHHHhHH
Confidence 444444444455555533 4666554
No 290
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=47.90 E-value=3.1e+02 Score=28.21 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=16.1
Q ss_pred hhHHHHhhhhH-HHHHHHHHHHHHHHHh
Q 002247 667 KSEAQKHEALS-TEIHMLRTEIEKLRKE 693 (947)
Q Consensus 667 ~~~~~~~~~~s-~ei~~Lkaeie~L~~e 693 (947)
++-+++.+.|. -.++-|+.++..|...
T Consensus 30 ~~ke~lge~L~~iDFeqLkien~~l~~k 57 (177)
T PF13870_consen 30 RQKEELGEGLHLIDFEQLKIENQQLNEK 57 (177)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 34555666655 4566667776666653
No 291
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.71 E-value=98 Score=28.25 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=16.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHH
Q 002247 760 MLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNL 793 (947)
Q Consensus 760 ~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l 793 (947)
..|..|...+..+-.+...|+..+..-+.+.+.|
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554444444433333
No 292
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=47.39 E-value=76 Score=31.65 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=52.9
Q ss_pred EEEE-eeeeeccccCcc----cc-eEEEeeeCCCC--------CccccccccccccCcccc-CccchhhheecccCCccc
Q 002247 15 VFKL-QFQCNQVPKLKK----SA-VMISLVPDDVG--------KPTFKLEKVPVQNGTCLW-ENPIYVTVKLIREPKTGY 79 (947)
Q Consensus 15 vFkl-qFhAtQVP~~gw----dk-L~vSiVp~DtG--------K~TaKs~KA~VrnG~C~W-~dpIyEtvkl~qD~~s~~ 79 (947)
||-+ .+.|..+|. +| |- ..|++.|.+.- .... .+++.-.+-+..| ...+.=.+ +
T Consensus 2 ~~~~~~~~A~~L~~-~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~-kT~v~~~tlnP~W~nE~f~f~v-----~---- 70 (137)
T cd08691 2 SFSLSGLQARNLKK-GMFFNPDPYVKISIQPGKRHIFPALPHHGQEC-RTSIVENTINPVWHREQFVFVG-----L---- 70 (137)
T ss_pred EEEEEEEEeCCCCC-ccCCCCCceEEEEEECCCccccccccccccee-eeeeEcCCCCCceEceEEEEEc-----C----
Confidence 7888 899998884 44 22 45556554432 1122 2223333335556 33322222 1
Q ss_pred cccceeeeeeecc--CCc---cccccceecchhhhhccc--CCccccccccc
Q 002247 80 IKEKIYHFIVSTG--SSK---SGFLGEASIDFADFAAET--EPLTLSLPLKF 124 (947)
Q Consensus 80 ~~e~iykfvVs~G--SSk---SgiLGEasINlAdYa~a~--kp~tVSLPLk~ 124 (947)
...+..|-|.-- .++ ..+||.+.|++++++... ....++.||.+
T Consensus 71 -~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k 121 (137)
T cd08691 71 -PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGR 121 (137)
T ss_pred -CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCc
Confidence 123566666532 233 379999999999998653 22455666654
No 293
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=47.16 E-value=77 Score=30.61 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=47.4
Q ss_pred eeeeeccccCccc---c--eEEEeeeCCC--CCccccccccccccCccccCccchhhheecccCCccccccceeeeeee-
Q 002247 19 QFQCNQVPKLKKS---A--VMISLVPDDV--GKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS- 90 (947)
Q Consensus 19 qFhAtQVP~~gwd---k--L~vSiVp~Dt--GK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs- 90 (947)
.+.|..+|..... - ..|++.|.+. +.... .+++.-.+-++.|..+++=.+. +--.....+..+|.|-
T Consensus 22 Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~-kT~v~~~t~nP~wnE~f~f~i~----~~~~~~~~~~l~~~V~d 96 (133)
T cd04009 22 ILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTP-KTQVKKKTLFPLFDESFEFNVP----PEQCSVEGALLLFTVKD 96 (133)
T ss_pred EEEeeCCCCcCCCCCCCCEEEEEEECCCcCcccccc-ccccCcCCCCCccCCEEEEEec----hhhcccCCCEEEEEEEe
Confidence 4677788764321 1 3344444332 12222 2333333444556544433322 1111123445566554
Q ss_pred -ccCCccccccceecchhhhhcccCCc
Q 002247 91 -TGSSKSGFLGEASIDFADFAAETEPL 116 (947)
Q Consensus 91 -~GSSkSgiLGEasINlAdYa~a~kp~ 116 (947)
-..++..++|++.|.+++..+--+.+
T Consensus 97 ~d~~~~d~~iG~~~i~l~~l~~~~~~~ 123 (133)
T cd04009 97 YDLLGSNDFEGEAFLPLNDIPGVEDTS 123 (133)
T ss_pred cCCCCCCcEeEEEEEeHHHCCcccccc
Confidence 23456899999999999988654443
No 294
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=47.07 E-value=2.3e+02 Score=26.84 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=33.2
Q ss_pred cCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002247 409 RNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVL 453 (947)
Q Consensus 409 ~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~L 453 (947)
.+.++.+..|+.++..+..+|..+.+..+.+..+|..+......+
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788888888888888877777777777777776665544
No 295
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=46.87 E-value=47 Score=35.12 Aligned_cols=50 Identities=32% Similarity=0.435 Sum_probs=31.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHh
Q 002247 258 VMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLR 309 (947)
Q Consensus 258 ~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLK 309 (947)
+....+..++.++..|+++|.++.++ ++..++.+|+.|-|.++.|||-..
T Consensus 109 s~~~ei~~L~~kI~~L~~~in~~~k~--~~n~~i~slk~EL~d~iKe~e~~e 158 (181)
T PF04645_consen 109 SIKKEIEILRLKISSLQKEINKNKKK--DLNEEIESLKSELNDLIKEREIRE 158 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344466667777777777776665 345556677777777777776543
No 296
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=46.65 E-value=46 Score=31.68 Aligned_cols=57 Identities=25% Similarity=0.241 Sum_probs=39.8
Q ss_pred ceeeeeee--ccCCccccccceecchhhhhcccCCcccccccccCC-----CCCeeeeeeeeccC
Q 002247 83 KIYHFIVS--TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKFAN-----SGAVLHVTIEKMDG 140 (947)
Q Consensus 83 ~iykfvVs--~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cn-----sGtvLHVtIQ~L~~ 140 (947)
+...|.|. -+.++..+||.+.|++.+...... ....+||.... ...-|||.++...+
T Consensus 59 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 59 KELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPS-GRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CEEEEEEEECCCCCCCceEEEEEEeHHHhccCCc-eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 34566665 244578999999999999886433 35679998552 24567888887554
No 297
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.57 E-value=2.6e+02 Score=29.64 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHhhhhhHHHHH-HHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhh
Q 002247 249 VEKLKNEIAV-MMRQVELSELELL-SLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSE 326 (947)
Q Consensus 249 iE~LK~E~~~-L~R~ad~s~lELQ-tLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e 326 (947)
..+++.+..| +.+.....+--.. ..||.+..+-. ..++..++..|..|+..|..++..|+......+.......+..
T Consensus 86 L~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~-~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~ 164 (189)
T PF10211_consen 86 LLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQG-KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Q 002247 327 EHLKFLQEEIREELNYEKEVSAHLRLQLEKT 357 (947)
Q Consensus 327 ~~~~~l~eElr~El~yEKe~NaNL~lQLqKT 357 (947)
. +...+|+.|.|--|.-|.-||+.+
T Consensus 165 ~------k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 165 E------KKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHhcC
No 298
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.57 E-value=1.1e+02 Score=37.80 Aligned_cols=95 Identities=18% Similarity=0.296 Sum_probs=63.2
Q ss_pred ccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhh
Q 002247 703 RRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNS 782 (947)
Q Consensus 703 ~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~s 782 (947)
+.+.-.+.+.+...+..+++...|+..|..++.-++++++++..+|..++..-..+ . ..--|++.+.-....|...
T Consensus 414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~-~---~~~rei~~~~~~I~~L~~~ 489 (652)
T COG2433 414 RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK-V---RKDREIRARDRRIERLEKE 489 (652)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hhhHHHHHHHHHHHHHHHH
Confidence 34445556667778888888888888888888888888888888888876532211 1 1123444455555556666
Q ss_pred HhHHHHhhHHHHHHHHHHH
Q 002247 783 LIEEKLEKDNLAKQVFQLK 801 (947)
Q Consensus 783 ls~~~~EkE~l~kqv~qLk 801 (947)
|.+....-+-|+..+.+|+
T Consensus 490 L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 490 LEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666
No 299
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.54 E-value=3.4e+02 Score=28.79 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 002247 648 IQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG 701 (947)
Q Consensus 648 ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~ 701 (947)
++.+..++....++++...+.+-+....+.+++..++..+.+-+..+..|..-.
T Consensus 112 l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 112 LEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344455556667777788889999999999999999999998887764443
No 300
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.45 E-value=2.2e+02 Score=27.28 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=36.8
Q ss_pred HHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002247 405 LAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVL 453 (947)
Q Consensus 405 Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~L 453 (947)
||+ .+.++.+..|+.+|..+...|..+.+..+.|+.+|.++...+..+
T Consensus 60 lv~-~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 60 LVK-TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred hhe-ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 334677788999998888888888888888888888887776554
No 301
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=45.88 E-value=1.7e+02 Score=30.21 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhh
Q 002247 500 KQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNT 567 (947)
Q Consensus 500 keQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na 567 (947)
+++...|...-..+.+|+.+|..|+.+.......+++++..+.- .-||.. ||+.+--.|+
T Consensus 40 d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~------~~ai~~--al~~akakn~ 99 (155)
T PF06810_consen 40 DKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK------DSAIKS--ALKGAKAKNP 99 (155)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH--HHHHcCCCCH
Confidence 66677777788899999999999999999888888888877654 234433 6665444443
No 302
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=44.64 E-value=39 Score=32.44 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=49.5
Q ss_pred eeeeccccCc---ccc-eEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee--ccC
Q 002247 20 FQCNQVPKLK---KSA-VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--TGS 93 (947)
Q Consensus 20 FhAtQVP~~g---wdk-L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GS 93 (947)
.+|..+|... .|. .-|.+.|.. ++...+-+| |..++ .+|+|.-+=-..-......+....+|.|- -+.
T Consensus 20 i~A~~L~~~~~~~~DpyVkv~l~~~~-~~~~~~kT~--v~~~~---~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 20 MHAKNLPLLDGSDPDPYVKTYLLPDP-QKTTKRKTK--VVRKT---RNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred EEeeCCCCCCCCCCCCEEEEEEeeCC-ccCCceeCC--ccCCC---CCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 4666776532 122 233445543 333333233 33333 56666443211111223455666777665 344
Q ss_pred CccccccceecchhhhhcccCCccccccc
Q 002247 94 SKSGFLGEASIDFADFAAETEPLTLSLPL 122 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a~kp~tVSLPL 122 (947)
++..+||++.|+|+++... .+...-+||
T Consensus 94 ~~~~~lG~~~i~l~~l~~~-~~~~~W~~L 121 (122)
T cd08381 94 VENEFLGGVCIPLKKLDLS-QETEKWYPL 121 (122)
T ss_pred cCCcEEEEEEEeccccccC-CCccceEEC
Confidence 6789999999999997742 333333443
No 303
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=44.59 E-value=1e+02 Score=28.82 Aligned_cols=86 Identities=13% Similarity=0.244 Sum_probs=46.1
Q ss_pred eeeeeccccCccc----ceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCcccc-ccceeeeeeec--
Q 002247 19 QFQCNQVPKLKKS----AVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYI-KEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~gwd----kL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~-~e~iykfvVs~-- 91 (947)
-.+|.++|...+. --||-|.=...|+.++||. ..-.+-+..|..+++ |.-. .... .....+|.|--
T Consensus 7 v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~-v~~~t~nP~Wne~f~----f~~~--~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 7 IHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTR-IIRKDLNPVWEETWF----VLVT--PDEVKAGERLSCRLWDSD 79 (111)
T ss_pred EEEeeCCCcccCCCCCCCccEEEEEccCCCccEeee-eECCCCCCccceeEE----EEeC--chhccCCCEEEEEEEeCC
Confidence 4578888864332 1234332223466666543 322333445555443 2111 1111 23456776652
Q ss_pred cCCccccccceecchhhhhc
Q 002247 92 GSSKSGFLGEASIDFADFAA 111 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~ 111 (947)
..++..+||++.|.+++.+.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc
Confidence 34567999999999999984
No 304
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.33 E-value=76 Score=32.64 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=51.1
Q ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhh
Q 002247 620 NDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN 696 (947)
Q Consensus 620 neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~ 696 (947)
.+.++.|.+.|-.+..+|+.++-.|.-+|..++ .-..-+.++..+++.||.-|+..+-.++...+.
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl-----------~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALL-----------TANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999988885542 223456788999999999999988877664443
No 305
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=44.28 E-value=4.5e+02 Score=28.54 Aligned_cols=30 Identities=27% Similarity=0.201 Sum_probs=20.5
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhhh
Q 002247 559 LRKTRWKNTVTAERLQDEFRRLSVDMASKF 588 (947)
Q Consensus 559 Lrk~r~~na~~~e~LQ~e~~~LS~qm~s~~ 588 (947)
|.++=-.|..+.+-|--|+.+|=.||+-|+
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LEeql~q~~ 192 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLEEQLSQMQ 192 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445566677777777888877777665
No 306
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.23 E-value=4.7e+02 Score=28.71 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=27.7
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHh---hhhHHHHHHHHHHHHHHHH
Q 002247 630 NGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKH---EALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 630 ~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~---~~~s~ei~~Lkaeie~L~~ 692 (947)
..+.++++.....-..+.|+|.+.+. -.++...++.-++++ ..|-.++.-+...++++..
T Consensus 11 ~~a~~~~~~dk~EDp~~~l~Q~ird~---~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 11 VKANINELLDKAEDPEKMLEQAIRDM---ESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556665554444 223333333333222 2344455555555555543
No 307
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=44.17 E-value=42 Score=31.90 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=36.6
Q ss_pred ceeeeeeec--cCCccccccceecchhhhhcccCCcccccccccCC-----CCCeeeeee
Q 002247 83 KIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFAN-----SGAVLHVTI 135 (947)
Q Consensus 83 ~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cn-----sGtvLHVtI 135 (947)
++..|.|-- ..++..++|.+.|.++.......+...-+||+.-. +|.| ||.+
T Consensus 61 ~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i-~l~~ 119 (121)
T cd04054 61 HTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEI-HLEL 119 (121)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEE-EEEE
Confidence 567777753 34577899999999988876444566778887633 6776 6554
No 308
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=44.04 E-value=3.9e+02 Score=27.73 Aligned_cols=20 Identities=50% Similarity=0.631 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 002247 673 HEALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 673 ~~~~s~ei~~Lkaeie~L~~ 692 (947)
...+..||.-|+++||.++-
T Consensus 133 ~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 133 NNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888775
No 309
>PRK00106 hypothetical protein; Provisional
Probab=43.97 E-value=7.1e+02 Score=30.75 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhh
Q 002247 634 LQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYN 696 (947)
Q Consensus 634 l~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~ 696 (947)
+.+.-..++.|...+++-...|+.+.++|. ..++.......+++.++.+++.+..+...
T Consensus 99 L~qrE~rL~qREE~LekRee~LekrE~eLe----~kekeLe~reeeLee~~~~~~~~~~~~~~ 157 (535)
T PRK00106 99 LKQIESRLTERATSLDRKDENLSSKEKTLE----SKEQSLTDKSKHIDEREEQVEKLEEQKKA 157 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555555 22223344445555555555555554433
No 310
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.63 E-value=1.9e+02 Score=31.64 Aligned_cols=97 Identities=19% Similarity=0.305 Sum_probs=66.5
Q ss_pred chhhHHHHHH-HHHH-hhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH-hhhhhhhhchhhhHhHHH-
Q 002247 412 DKEVDMLKQK-IRDQ-GDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQ-QESMKSRECIESLATIKE- 487 (947)
Q Consensus 412 ~~E~~~L~qK-I~dL-~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~-Q~~k~q~EcSs~~~~I~e- 487 (947)
..|+.+|+.+ +.+. ..|++.|-.-.++.+.+|++.-.+++.|+. .|.+... +- -+.||++.-..|++
T Consensus 72 q~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkk-------ql~eaKi~r~--nrqe~~~l~kvis~~ 142 (222)
T KOG3215|consen 72 QDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIELLKK-------QLHEAKIVRL--NRQEYSALSKVISDC 142 (222)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--hHHHHHHHHHHHhcC
Confidence 4677888865 4454 479999988899999999999999999987 5555444 21 35678776555443
Q ss_pred ------------H-------HHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 002247 488 ------------L-------ESQSERLEDKIKQQSEEYSESLISINELE 517 (947)
Q Consensus 488 ------------L-------e~q~e~LE~eLkeQ~~efSe~l~tI~~Le 517 (947)
| +.--+.++.+|.--++.|.=.++++.+|+
T Consensus 143 p~RsEt~k~l~el~keleel~~~~~s~~~klelrRkqf~~lm~~~~elQ 191 (222)
T KOG3215|consen 143 PARSETDKDLNELKKELEELDDLNNSTETKLELRRKQFKYLMVSTEELQ 191 (222)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcchHHHhhHHHHH
Confidence 2 33334445566666667777777776666
No 311
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=43.55 E-value=5.1e+02 Score=28.92 Aligned_cols=146 Identities=19% Similarity=0.266 Sum_probs=84.7
Q ss_pred HHHHhHHHHHhhhHHHHHHH---HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhH
Q 002247 533 EFEDDIDAVTHAKTEQEQRA---IRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQK 609 (947)
Q Consensus 533 ~fe~dl~a~~~~~~EqEqRa---i~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk 609 (947)
+|..-+..+.....++.... +.|++.|..---.+......+ .+......+.|+-....-..+..++.+.
T Consensus 149 g~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~i--------lq~d~~L~~~ek~~~~~~~k~e~~e~e~ 220 (297)
T PF02841_consen 149 GYQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSI--------LQADQQLTEKEKEIEEEQAKAEAAEKEK 220 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHH--------HHH-TTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665553 357777766533322111111 2344455555665555555555667777
Q ss_pred HHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 002247 610 AHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEK 689 (947)
Q Consensus 610 ~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~ 689 (947)
..+++....-...+..-...|+..+.+|..++..-...+.+....+- ...+. .+..-..+.|.+++..|..+|..
T Consensus 221 ~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~~l--~~k~~---eq~~~l~e~~~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 221 EKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQERLL--EQKLQ---EQEELLKEGFQEEAEKLQKEIQD 295 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888777777777777777888888888877776665433222221 11111 22333456688888888888887
Q ss_pred HH
Q 002247 690 LR 691 (947)
Q Consensus 690 L~ 691 (947)
|.
T Consensus 296 L~ 297 (297)
T PF02841_consen 296 LQ 297 (297)
T ss_dssp HH
T ss_pred cC
Confidence 64
No 312
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=43.13 E-value=3.1e+02 Score=26.33 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002247 516 LECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLA 595 (947)
Q Consensus 516 Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~ 595 (947)
|+.++...+++.+...+....||+++-+.|-|+.=.| |+|-|= .+.+..+..|..+..+.-++||.+-
T Consensus 2 l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~------LKksYe------~rwek~v~~L~~e~~~l~~E~e~L~ 69 (87)
T PF12709_consen 2 LKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKA------LKKSYE------ARWEKKVDELENENKALKRENEQLK 69 (87)
T ss_pred HHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999987444 543221 1244555666666666666666654
Q ss_pred HH
Q 002247 596 MK 597 (947)
Q Consensus 596 ~~ 597 (947)
.+
T Consensus 70 ~~ 71 (87)
T PF12709_consen 70 KK 71 (87)
T ss_pred HH
Confidence 43
No 313
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.94 E-value=3.8e+02 Score=29.50 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 002247 768 EVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGK 816 (947)
Q Consensus 768 E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek 816 (947)
+|......++.|=+-+..-..|+++.+..+.++-+++..-.+..+.+-+
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666677777777888888888888888888887777666633
No 314
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=42.65 E-value=2.2e+02 Score=26.13 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=50.2
Q ss_pred hchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH---------------HHHHHHHHHHHHHHHHHhHHHH
Q 002247 477 ECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQ---------------VKELKRELDKQAQEFEDDIDAV 541 (947)
Q Consensus 477 EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q---------------~~sLekELe~Qaq~fe~dl~a~ 541 (947)
+.+.....+..+.+++..++.++ .++...+..+..+... +..+...|+.+...++.+++.+
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~----~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQL----RELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554333 3444444444444433 5777888888888888888888
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q 002247 542 THAKTEQEQRAIRAEEELR 560 (947)
Q Consensus 542 ~~~~~EqEqRai~aeeaLr 560 (947)
......-+.+....+..|+
T Consensus 82 ~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877777777766666654
No 315
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.63 E-value=1.3e+02 Score=31.18 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHH
Q 002247 765 LQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDE 803 (947)
Q Consensus 765 L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~e 803 (947)
...+...+..+..+||.-|.+.+.+.+.|++|.-.|..|
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666666666777888888888888777543
No 316
>PF14992 TMCO5: TMCO5 family
Probab=42.54 E-value=5.1e+02 Score=29.59 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh----hhhhhhHHHHhh---hhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCC
Q 002247 636 ELSDQLEQKDKQIQKMYLELDHSSSQL----IDEHKSEAQKHE---ALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNK 708 (947)
Q Consensus 636 eL~~q~d~K~k~ie~m~~el~~kSkql----e~~~~~~~~~~~---~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~ 708 (947)
.|.-.|+.|-..|+.+..|+ .++.-+ +....--.+... .+-.|..+|--+++++..-+..|-...-+.+..
T Consensus 22 ~lL~ki~~~E~~iq~Le~Ei-t~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~- 99 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREI-TKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETN- 99 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCC-
Confidence 44555666666666666555 222221 111111122233 345677888888888866555553332111111
Q ss_pred CccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 002247 709 PKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELI 749 (947)
Q Consensus 709 ~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~ 749 (947)
+.-.-..+...++.+....+++...++.++++..+......
T Consensus 100 ~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~ 140 (280)
T PF14992_consen 100 VQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQ 140 (280)
T ss_pred CCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223344555555566666667776666666655333
No 317
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.41 E-value=88 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=30.1
Q ss_pred CccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHH
Q 002247 709 PKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAH 745 (947)
Q Consensus 709 ~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~ 745 (947)
.|.+.-.++-.|+.......+|..+|..|+++.+.++
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667888899999999999999999988887765
No 318
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=42.21 E-value=4.6e+02 Score=28.09 Aligned_cols=110 Identities=13% Similarity=0.187 Sum_probs=67.8
Q ss_pred HHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 002247 503 SEEYSESLISIN-ELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLS 581 (947)
Q Consensus 503 ~~efSe~l~tI~-~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS 581 (947)
..-|......|. .+...+..+..++.++-..++.+...+...+..+ ..+|.|++-+|-..+..+. .+.
T Consensus 73 a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~-------~~~l~KaK~~Y~~~c~~~e----~~~ 141 (236)
T cd07651 73 AKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQ-------EKYLEKAREKYEADCSKIN----SYT 141 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHH----HHH
Confidence 444444444433 3455667777777777777777777666555444 3367777777766654432 222
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHH
Q 002247 582 VDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQ 640 (947)
Q Consensus 582 ~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q 640 (947)
.+...+ + -.+..+++..|+|+..++...+++|+..++.|..-
T Consensus 142 ~~~~~~-------~----------~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~ 183 (236)
T cd07651 142 LQSQLT-------W----------GKELEKNNAKLNKAQSSINSSRRDYQNAVKALREL 183 (236)
T ss_pred HHHccc-------C----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221110 0 01345688889999999999999999999988544
No 319
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=41.69 E-value=5.2e+02 Score=28.49 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHH
Q 002247 432 FKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIK 500 (947)
Q Consensus 432 ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLk 500 (947)
..+++.+|+.+|.|++.+...-.+ .|.+ +..++..|+.+....+.+-.
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~-------~L~e--------------~e~~a~~Leek~k~aeeea~ 50 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQE-------ALEE--------------SEETAEELEEKLKQAEEEAE 50 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-------HHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888777655544 3322 33456666666666554443
No 320
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.66 E-value=81 Score=27.56 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHH---HHHHHHhhhhhhhh
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLT---EDCQVLEQENQCLT 461 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe---~Dye~LkqEN~dls 461 (947)
..+..+++.|.+|..+++..+.+++.|+.+++.|. .+.+.+-.++++++
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence 45677888888888888888889999999888882 33344444444443
No 321
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.45 E-value=5.3e+02 Score=33.02 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHH
Q 002247 247 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIE 304 (947)
Q Consensus 247 ~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E 304 (947)
..+-+|..++..|...-.. |...+-+.++.....-.+.-.++...-.+-|.+..-
T Consensus 222 ~~~~~ln~~l~~l~~~~~~---e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~ 276 (771)
T TIGR01069 222 QAIVKLNNKLAQLKNEEEC---EIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQAR 276 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888877766554 556666677777777777777777777888876643
No 322
>PF14282 FlxA: FlxA-like protein
Probab=40.75 E-value=1.5e+02 Score=28.70 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=31.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhccc----chhHHHHhhHHHHHHHHHHHHHHHH
Q 002247 731 EKKFASAKQEAAKAHEELISMRSLK----GENEMLIGNLQAEVENLKVQQNKLQ 780 (947)
Q Consensus 731 ~~~ia~lk~Ea~~~~~eL~~~k~~k----dekE~~i~~L~~E~e~Lk~q~~~Lk 780 (947)
-..|+.|++.+..+.++|..+..-+ +.+...+..|+.+|..|.+|...|.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666622 3566677777777777766665443
No 323
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.49 E-value=1.4e+02 Score=27.35 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISM 751 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~ 751 (947)
.++.+..+|++|+-|++.++++-..+
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555555555555554443333
No 324
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=40.36 E-value=5.2e+02 Score=31.34 Aligned_cols=121 Identities=17% Similarity=0.212 Sum_probs=74.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCCCCchhhhchhH-HHHhhhhhhhhhhhhhhchh-hhhhHHHhh
Q 002247 786 EKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMK-ERLRKGQKKLNKAELETSDN-RIAVDEYRH 863 (947)
Q Consensus 786 ~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~gr~~~~tk~~~~-nk~~~~~i~~~e~~~e~s~~-~~~~eke~~ 863 (947)
+-.|.+-.+|.+-||+-+|++-|-++... + |- ..++. -+||+.-. |-+..-+-. +-.++|++.
T Consensus 300 eg~e~e~~rkelE~lR~~L~kAEkele~n------S-~w-----saP~aLQ~wLq~T~---E~E~q~~~kkrqnaekql~ 364 (575)
T KOG4403|consen 300 EGVENETSRKELEQLRVALEKAEKELEAN------S-SW-----SAPLALQKWLQLTH---EVEVQYYNKKRQNAEKQLK 364 (575)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhc------c-CC-----CCcHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHH
Confidence 34455555677788888887776654332 1 21 11111 36666532 222222222 222667766
Q ss_pred hhhh-ccccccccccc-cccCCCCCCchHHHHHHHHHHHHHhHhHHHHHHHHHhhhhccc
Q 002247 864 MIRK-GETCSEKGVTA-LASHSSDEGNFTEVLMEVSLLKEKNKRMETELKEMQERYSEIS 921 (947)
Q Consensus 864 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lk~r~~~~e~el~~m~~rys~~s 921 (947)
.++. .+-...+...+ +.+|..-+..++++=.-+-.+|.+...+-+.|+|-..|+-.|-
T Consensus 365 ~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE 424 (575)
T KOG4403|consen 365 EAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIE 424 (575)
T ss_pred HHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 44455555555 6677555556888888889999999999999999999998773
No 325
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=39.74 E-value=4e+02 Score=26.64 Aligned_cols=72 Identities=24% Similarity=0.451 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRK 561 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk 561 (947)
+.+.-|...+++|..++.....+.. .+++....+...+.......-...+.+.+.+.--.++..+..--+||
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~-------~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rk 137 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELA-------SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRK 137 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444444444333 33334444444444444444444555555555555555554444444
No 326
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.71 E-value=8.5e+02 Score=30.43 Aligned_cols=228 Identities=20% Similarity=0.245 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 002247 511 ISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDE 590 (947)
Q Consensus 511 ~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~e 590 (947)
-||.+=...|+.|.+.|.+|-++-.+.-...+..+-=-. + ---+|+. . |.-+++|+.|= -.++
T Consensus 264 qtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~-------~-~~h~r~~-~------er~IerLkeqr--~rde 326 (654)
T KOG4809|consen 264 QTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAH-------E-MAHMRMK-V------ERIIERLKEQR--ERDE 326 (654)
T ss_pred hhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHH-------H-HHhhhch-H------HHHHHHhcchh--hhhH
Confidence 366677778899999999998888776666555432211 1 1234444 1 35666666653 2344
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 002247 591 NEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEA 670 (947)
Q Consensus 591 nEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~ 670 (947)
+|+ ..|....|..+.-|-|-..-++.+|.- -++.+-+|.+.-..=...+...-.+| +-++
T Consensus 327 rE~-----~EeIe~~~ke~kdLkEkv~~lq~~l~e----ke~sl~dlkehassLas~glk~ds~L----k~le------- 386 (654)
T KOG4809|consen 327 RER-----LEEIESFRKENKDLKEKVNALQAELTE----KESSLIDLKEHASSLASAGLKRDSKL----KSLE------- 386 (654)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhh----hHHH-------
Confidence 444 345666666666666666655555443 22222222222111111111111111 1111
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002247 671 QKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELIS 750 (947)
Q Consensus 671 ~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~ 750 (947)
=. |+.-+.++.+|.. .| .++....++.+ -.-++.-.++.-..++.....++..+..|+..+++=|..
T Consensus 387 Ia-------lEqkkEec~kme~---qL-kkAh~~~ddar--~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilke 453 (654)
T KOG4809|consen 387 IA-------LEQKKEECSKMEA---QL-KKAHNIEDDAR--MNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKE 453 (654)
T ss_pred HH-------HHHHHHHHHHHHH---HH-HHHHHhhHhhh--cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111222222221 11 11111111111 345677778888888888888888888889888888889
Q ss_pred hhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhH
Q 002247 751 MRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKD 791 (947)
Q Consensus 751 ~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE 791 (947)
++.+|+++...|+.|. .-.++|-....+..++...||+
T Consensus 454 veneKnDkdkkiaele---r~~kdqnkkvaNlkHk~q~Ekk 491 (654)
T KOG4809|consen 454 VENEKNDKDKKIAELE---RHMKDQNKKVANLKHKQQLEKK 491 (654)
T ss_pred HHhhhccccchhhhcC---chhhhhhhHHhhHHHHHHHHHH
Confidence 9999999999999998 5566776666666666677765
No 327
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.62 E-value=7.9e+02 Score=30.03 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHH
Q 002247 573 LQDEFRRLSVDMASKFDENEKL 594 (947)
Q Consensus 573 LQ~e~~~LS~qm~s~~~enEk~ 594 (947)
|..++..++.+.-+..+.++++
T Consensus 350 leqdL~a~~eei~~~eel~~~L 371 (521)
T KOG1937|consen 350 LEQDLEAVDEEIESNEELAEKL 371 (521)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444444444444444443
No 328
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.61 E-value=75 Score=34.20 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHH----HHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHH
Q 002247 735 ASAKQEAAKAHE----ELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNL 793 (947)
Q Consensus 735 a~lk~Ea~~~~~----eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l 793 (947)
+++|.|.+.+++ +|..+..-+.....-++.+..+|+.++.|.+-|...|..-..|.+.|
T Consensus 131 ~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444443 23333323334444555556666666666666666655555555444
No 329
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.30 E-value=1.1e+03 Score=31.64 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 002247 601 EANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLID 664 (947)
Q Consensus 601 Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~ 664 (947)
++..|+..+-.|.+-|.+-.. -+..-.+-+++++-|.+.+..+.-.++++-..|+..-.++++
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~ 715 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQR 715 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777665544333 222233367788888888888888888887777665555553
No 330
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.28 E-value=66 Score=35.48 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=54.2
Q ss_pred hhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhh
Q 002247 715 ETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNS 782 (947)
Q Consensus 715 e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~s 782 (947)
+.-.+++....|..+|.+++.-+..|.+..++.|.++.-.+-.++++++.|-.++.-|+...++|-..
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34456667777788888888888888888888888888888888888888888888888877777554
No 331
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=39.28 E-value=1.8e+02 Score=27.21 Aligned_cols=102 Identities=23% Similarity=0.344 Sum_probs=55.3
Q ss_pred eeeeccccCcc--cc-----eEEEeeeCCC-CCccccccccccccC-ccccCccchhhheecc-cCCccccccceeeeee
Q 002247 20 FQCNQVPKLKK--SA-----VMISLVPDDV-GKPTFKLEKVPVQNG-TCLWENPIYVTVKLIR-EPKTGYIKEKIYHFIV 89 (947)
Q Consensus 20 FhAtQVP~~gw--dk-----L~vSiVp~Dt-GK~TaKs~KA~VrnG-~C~W~dpIyEtvkl~q-D~~s~~~~e~iykfvV 89 (947)
+.|..+|...+ .. ..|++.+... +....||. +.-.+| +..|... ..|.- ++.. ....|-|
T Consensus 9 i~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~-~~~~~~~~P~w~e~----f~f~~~~~~~-----~~l~~~V 78 (128)
T cd00275 9 ISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTK-VVKNNGFNPVWNET----FEFDVTVPEL-----AFLRFVV 78 (128)
T ss_pred EeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeee-eecCCCcCCccCCc----EEEEEeCCCe-----EEEEEEE
Confidence 44556765442 22 2245544433 33333433 233556 7778543 22221 2221 2345666
Q ss_pred ec--cCCccccccceecchhhhhcccCCcccccccccC----CCCCeeeeeee
Q 002247 90 ST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFA----NSGAVLHVTIE 136 (947)
Q Consensus 90 s~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~c----nsGtvLHVtIQ 136 (947)
.. +. +..++|.+.+.+.+... ....+||..- -.|.-|+|+|+
T Consensus 79 ~d~~~~-~~~~iG~~~~~l~~l~~----g~~~~~l~~~~~~~~~~~~l~v~~~ 126 (128)
T cd00275 79 YDEDSG-DDDFLGQACLPLDSLRQ----GYRHVPLLDSKGEPLELSTLFVHID 126 (128)
T ss_pred EeCCCC-CCcEeEEEEEEhHHhcC----ceEEEEecCCCCCCCcceeEEEEEE
Confidence 63 34 88999999999998743 4456788642 33567777765
No 332
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=39.26 E-value=55 Score=32.32 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=49.2
Q ss_pred eeeccccCc---ccceEE--EeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--cC
Q 002247 21 QCNQVPKLK---KSAVMI--SLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--GS 93 (947)
Q Consensus 21 hAtQVP~~g---wdkL~v--SiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--GS 93 (947)
+|..+|... -...|| .+.|.+ |+... .-|+.|..|+| +|+|--+=... ....++.++...|.|.- +.
T Consensus 23 karnL~~~~~~~~~dpyVkv~llp~~-~~~~~-~~kT~v~~~t~---nPvfnEtF~f~-i~~~~l~~~~L~~~V~~~~~~ 96 (138)
T cd08408 23 KGSNFKNLAMNKAPDTYVKLTLLNSD-GQEIS-KSKTSIRRGQP---DPEFKETFVFQ-VALFQLSEVTLMFSVYNKRKM 96 (138)
T ss_pred EecCCCccccCCCCCeeEEEEEEeCC-Cccee-eccceeecCCC---CCcEeeeEEEE-CCHHHhCccEEEEEEEECCCC
Confidence 555666542 223344 455644 33221 23566777774 78885443332 45566788888888883 56
Q ss_pred Cccccccceecchh
Q 002247 94 SKSGFLGEASIDFA 107 (947)
Q Consensus 94 SkSgiLGEasINlA 107 (947)
++..+||+++|.+.
T Consensus 97 ~~~~~iG~v~l~~~ 110 (138)
T cd08408 97 KRKEMIGWFSLGLN 110 (138)
T ss_pred CCCcEEEEEEECCc
Confidence 88999999887664
No 333
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=38.80 E-value=3e+02 Score=25.38 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHH
Q 002247 496 EDKIKQQSEEYSESLISINELECQVKEL----KRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEEL 559 (947)
Q Consensus 496 E~eLkeQ~~efSe~l~tI~~Le~q~~sL----ekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaL 559 (947)
++.|....+++++=.-.|-+|+..+..+ .+++-++-..+..++..|.++..+..+...+|+.++
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444888888888888888777643 234555555556666666666666665555555443
No 334
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=38.66 E-value=4.2e+02 Score=31.93 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 002247 486 KELESQSERLEDKIKQQSEEYSESLISI 513 (947)
Q Consensus 486 ~eLe~q~e~LE~eLkeQ~~efSe~l~tI 513 (947)
.+++..-++++++...-..+|..+.+.+
T Consensus 214 ~e~~~~~~~~~e~~~~~~~ey~~~~~q~ 241 (447)
T KOG2751|consen 214 KELEFKAERLNEEEDQYWREYNNFQRQL 241 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555566555556665555444
No 335
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=38.48 E-value=1.1e+02 Score=29.54 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=21.0
Q ss_pred cccceeeeeee--ccCCccccccceecchhhh
Q 002247 80 IKEKIYHFIVS--TGSSKSGFLGEASIDFADF 109 (947)
Q Consensus 80 ~~e~iykfvVs--~GSSkSgiLGEasINlAdY 109 (947)
+.+....|-|. -..++..+||+++|.+++.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 34555666665 2345678999999999875
No 336
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.21 E-value=1.5e+02 Score=26.97 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHH
Q 002247 436 AEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLED 497 (947)
Q Consensus 436 ~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~ 497 (947)
...|+.++++|=.-|+.|+.||.-+--.+.. ++.|-..+..-+..--+.|+.|=.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~-------~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKT-------WREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888876533333 333444444444444445555433
No 337
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=38.20 E-value=4.2e+02 Score=32.29 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=26.4
Q ss_pred HHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 603 NEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 603 ~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle 663 (947)
.+++..+..++..+..-..+|.. .|.+|.+-...++.|...+++--.+|+.+.+++.
T Consensus 58 eE~~~~R~Ele~el~~~e~rL~q----rE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~ 114 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNELQR----LERRLLQREETLDRKMESLDKKEENLEKKEKELS 114 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333333 2333444444555555555555555555555555
No 338
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=38.07 E-value=71 Score=30.13 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=53.1
Q ss_pred eeeeeccccCcccceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee-c-cCCcc
Q 002247 19 QFQCNQVPKLKKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS-T-GSSKS 96 (947)
Q Consensus 19 qFhAtQVP~~gwdkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs-~-GSSkS 96 (947)
-+.|..+|...+..-.=.+|-+.+|....+|.-..-.+-++.|...+.=.+ .++. +. ......|.|. . ...+.
T Consensus 7 V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v---~~~~-~~-~~~~l~v~V~d~~~~~~d 81 (124)
T cd04049 7 LISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV---EYPG-WG-GDTKLILRIMDKDNFSDD 81 (124)
T ss_pred EEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEe---cCcc-cC-CCCEEEEEEEECccCCCC
Confidence 467777776544332111122223444444432111234677776544222 2221 11 2334456555 2 33467
Q ss_pred ccccceecchhhhhcccCCcccccccccCC
Q 002247 97 GFLGEASIDFADFAAETEPLTLSLPLKFAN 126 (947)
Q Consensus 97 giLGEasINlAdYa~a~kp~tVSLPLk~cn 126 (947)
.+||.+.|.+++++.. ....--+||+.+.
T Consensus 82 ~~iG~~~i~l~~l~~~-~~~~~~~~l~p~~ 110 (124)
T cd04049 82 DFIGEATIHLKGLFEE-GVEPGTAELVPAK 110 (124)
T ss_pred CeEEEEEEEhHHhhhC-CCCcCceEeeccc
Confidence 8999999999999863 3345666776654
No 339
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=38.02 E-value=1.5e+02 Score=30.41 Aligned_cols=80 Identities=28% Similarity=0.431 Sum_probs=53.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHH
Q 002247 482 LATIKELESQSERLEDKIKQQSEEYSES----LISINELE-------CQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQ 550 (947)
Q Consensus 482 ~~~I~eLe~q~e~LE~eLkeQ~~efSe~----l~tI~~Le-------~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEq 550 (947)
++.|--+-+|-.+|..+|.-.+.-||++ +..|..|- ..|.+|+-.++++.+.+-||-..|.
T Consensus 47 LV~IcVigsQ~~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAdhS~ll-------- 118 (138)
T PF03954_consen 47 LVVICVIGSQNSQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKADHSTLL-------- 118 (138)
T ss_pred HHHHHhhcCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhhHHHHH--------
Confidence 4556666888889999999999999844 44454443 3455555555555555555443332
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhh
Q 002247 551 RAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMAS 586 (947)
Q Consensus 551 Rai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s 586 (947)
.-|.++=.|++.||+||+.
T Consensus 119 -----------------lhvk~~~~DLr~LsCQma~ 137 (138)
T PF03954_consen 119 -----------------LHVKQFPKDLRSLSCQMAF 137 (138)
T ss_pred -----------------HHHHHHHHHHhhhhhhhhc
Confidence 2366788899999999973
No 340
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=37.34 E-value=2.4e+02 Score=26.41 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHh
Q 002247 764 NLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQK 806 (947)
Q Consensus 764 ~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~k 806 (947)
.+..++-.+|.+++++.+++..-..|..-++..|.+|+..-.+
T Consensus 15 ~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~k 57 (79)
T PF08581_consen 15 NLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRK 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677777777777777777777777777765444
No 341
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.32 E-value=1.9e+02 Score=27.25 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHH
Q 002247 764 NLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDEL 804 (947)
Q Consensus 764 ~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL 804 (947)
.||-||++||.+...|..-.-.--...+.|..+--||+.+.
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333444444444444443
No 342
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.30 E-value=6.2e+02 Score=32.39 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=20.9
Q ss_pred HHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Q 002247 613 EEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLEL 655 (947)
Q Consensus 613 Ee~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el 655 (947)
++.++.|.+-+.. ....+++|...+......+++...++
T Consensus 496 ~~ii~~A~~~~~~----~~~~~~~li~~L~~~~~~~e~~~~~~ 534 (771)
T TIGR01069 496 HFIIEQAKTFYGE----FKEEINVLIEKLSALEKELEQKNEHL 534 (771)
T ss_pred HHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556554443 44455666666665555555554444
No 343
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.07 E-value=4e+02 Score=28.93 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002247 676 LSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 676 ~s~ei~~Lkaeie~L~~ 692 (947)
+..|.+.|.++++.|..
T Consensus 47 ~~~e~~~L~~e~~~l~~ 63 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLER 63 (251)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344433333
No 344
>PRK11546 zraP zinc resistance protein; Provisional
Probab=37.01 E-value=2.9e+02 Score=28.55 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=52.3
Q ss_pred hHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHh
Q 002247 719 LIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLI 784 (947)
Q Consensus 719 ~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls 784 (947)
+-+....=+++...+.+-|+++.-.-+.||+.+-....=-+..|+.|..|+..|+.+..++.-.+.
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445666667788999999999999998888877888999999999999998887766544
No 345
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=36.67 E-value=1.3e+02 Score=27.55 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHH
Q 002247 247 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQL 308 (947)
Q Consensus 247 ~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqL 308 (947)
++++.||.+|+-|.|.+-...++|..|--.+=---.+--+++...-..+.+-+.+|.++..+
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~~w~~i~~vA~~ty~a~~~l~~ak~~L~~~ 63 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAEDLPTNWEEIPEVAQKTYDAYAELDEAKAELKAA 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998876655555555566777777777777777766544
No 346
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.57 E-value=2.9e+02 Score=25.22 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=45.6
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHH
Q 002247 480 ESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRA 552 (947)
Q Consensus 480 s~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRa 552 (947)
+....|.+=..+|..|-.+....+..-.....+|..|.+++..+++.+.. +-..++.....-...+.|+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~----l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKE----LKKKLEELEKELESLEERL 70 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 45566777788888888888888888888888888888887776655443 3333333333333344444
No 347
>PRK10698 phage shock protein PspA; Provisional
Probab=36.52 E-value=5.9e+02 Score=27.64 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=23.7
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhc
Q 002247 346 VSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEIS 383 (947)
Q Consensus 346 ~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs 383 (947)
..+|++--|.|.-+..-=|-..++|+++.|.+-+..+.
T Consensus 11 i~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA 48 (222)
T PRK10698 11 VNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSA 48 (222)
T ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665677777777777765544433
No 348
>PRK12704 phosphodiesterase; Provisional
Probab=36.31 E-value=8.9e+02 Score=29.66 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 002247 634 LQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSE 699 (947)
Q Consensus 634 l~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e 699 (947)
|.+-...++.|...|++--.+|+.+.+.+..+++. .+....+++.+..+...-..++..|+.
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~e----Le~~~~~~~~~~~~~~~~l~~~a~lt~ 152 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQE----LEKKEEELEELIEEQLQELERISGLTA 152 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 33334444444444444444444444444422221 223333444444444444444444543
No 349
>PF15294 Leu_zip: Leucine zipper
Probab=36.21 E-value=6.1e+02 Score=28.95 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=43.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhh--hhhhhhchhhhHhHHHHHHHHHHH
Q 002247 427 DEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQE--SMKSRECIESLATIKELESQSERL 495 (947)
Q Consensus 427 ~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~--~k~q~EcSs~~~~I~eLe~q~e~L 495 (947)
.||...+.|++.|...+.-++..|-+.-+|+-.|-..|..-+.-- .+....-+..-..|.+|+.+|..+
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~l 202 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAAL 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHH
Confidence 366667778999999999999999998888877766666644411 111111123334455555555555
No 350
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.09 E-value=2.2e+02 Score=26.87 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 002247 416 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQ 451 (947)
Q Consensus 416 ~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye 451 (947)
.-|+.||--..+.|...+-+.|+|+.+=.+|.....
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777776666655555555555444444433
No 351
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=36.00 E-value=5.2e+02 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHhhhhhhh
Q 002247 561 KTRWKNTVTAERLQDEFRRLSVDMASKFDE 590 (947)
Q Consensus 561 k~r~~na~~~e~LQ~e~~~LS~qm~s~~~e 590 (947)
.+.-...-+...|+.++..||++++|+|=-
T Consensus 108 ~Ie~Ek~~Al~elr~eva~Lav~iAsk~~~ 137 (154)
T PRK06568 108 LIQNQKSTASKELQDEFCDEVIKLVSEYFQ 137 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456778999999999999999843
No 352
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.93 E-value=8.8e+02 Score=29.49 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh
Q 002247 552 AIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG 631 (947)
Q Consensus 552 ai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e 631 (947)
+-+-++.|-|..-..++.+|+||=-++.|-. +|. .-...+..|+.+--.|++-.|+..+.|...++|-.
T Consensus 281 ~rrhrEil~k~eReasle~Enlqmr~qqlee-------ent----elRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 281 ERRHREILIKKEREASLEKENLQMRDQQLEE-------ENT----ELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3445567778888888888888855554432 222 22456777888888999999999988888777543
Q ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHh----hhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 002247 632 ------VKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKH----EALSTEIHMLRTEIEKLRKEQYNLSEHG 701 (947)
Q Consensus 632 ------~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~----~~~s~ei~~Lkaeie~L~~e~~~L~e~~ 701 (947)
+.+.+....+---.+.++.+..+| -+++++.++..-..- .--|.=...|-.+..+|+-.+..|.+++
T Consensus 350 ~eq~l~~rm~d~Lrrfq~ekeatqELieel---rkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqn 426 (502)
T KOG0982|consen 350 CEQKLRVRMNDILRRFQEEKEATQELIEEL---RKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQN 426 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhh
Confidence 334444444444555555555555 666666554432211 1112222234455555555555555555
No 353
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.74 E-value=1.6e+02 Score=32.19 Aligned_cols=92 Identities=26% Similarity=0.266 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhhhh-H
Q 002247 251 KLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEH-L 329 (947)
Q Consensus 251 ~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e~~-~ 329 (947)
-+=.++..|+.+ +..+-+.+.++++..+.++ |..|..+++++-..|++|.+....-.+ +.+.... +
T Consensus 118 ~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le--------~~~~~~~al 184 (216)
T KOG1962|consen 118 TLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLE--------KAQKKVDAL 184 (216)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 333445555554 6666778888888888877 888888888888888888887666444 1222233 5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHH
Q 002247 330 KFLQEEIREELNYEKEVSAHLRLQLE 355 (947)
Q Consensus 330 ~~l~eElr~El~yEKe~NaNL~lQLq 355 (947)
.-+.+++.+|.+=..+=+++|+-|++
T Consensus 185 ~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 185 KKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 66677777777766666777777764
No 354
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=35.67 E-value=8e+02 Score=28.94 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=17.2
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHhhhh
Q 002247 601 EANEQRMQKAHLEEMLQKANDELSLIK 627 (947)
Q Consensus 601 Ea~eLR~qk~~LEe~Lqk~neeL~~~~ 627 (947)
+...++.+...++..+..+..++..++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~ 263 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLT 263 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666667777777776666665543
No 355
>PF14992 TMCO5: TMCO5 family
Probab=34.99 E-value=6.8e+02 Score=28.65 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhh
Q 002247 346 VSAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKL 389 (947)
Q Consensus 346 ~NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~ 389 (947)
+|.+|.-.+|+.-|.|-.|+.-++.=|..+----+||....+..
T Consensus 5 Ln~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~ 48 (280)
T PF14992_consen 5 LNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIA 48 (280)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 67788888999999999999999998888776667777654433
No 356
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=34.41 E-value=9.4e+02 Score=29.40 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEE 747 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~e 747 (947)
..++..|..+|..|++--.+...|
T Consensus 164 ~~~~~~L~~qi~~L~~~n~~i~~e 187 (475)
T PRK10361 164 AQERHTLAHEIRNLQQLNAQMAQE 187 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554443443333
No 357
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=34.14 E-value=2e+02 Score=27.14 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=42.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHH---HHHHHHHHHHHHHhhHhHHHHhhHHHHH
Q 002247 729 DLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQA---EVENLKVQQNKLQNSLIEEKLEKDNLAK 795 (947)
Q Consensus 729 ~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~---E~e~Lk~q~~~Lk~sls~~~~EkE~l~k 795 (947)
....+|-.+-++--.+..+++.++..++..-..|+.+.. +++.|+++...++.-+..-+.+...+..
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666777777777777777677776665 5777777777776665544443333333
No 358
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=34.02 E-value=2.5e+02 Score=29.43 Aligned_cols=69 Identities=28% Similarity=0.379 Sum_probs=47.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHh
Q 002247 728 DDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQK 806 (947)
Q Consensus 728 ~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~k 806 (947)
..|..+|.--++.|..+..+|+ ..-..+..+...|+.-.+.+...|..+....+.|+++|..+.+.+++
T Consensus 113 ~~L~~~i~~~q~~~~~~i~~L~----------~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 113 EDLQDQIQKNQDKVQALINELN----------DFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 3444444445555555555444 44456778888888888999999998889999999999998887654
No 359
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=33.37 E-value=1.2e+02 Score=29.13 Aligned_cols=44 Identities=30% Similarity=0.380 Sum_probs=29.6
Q ss_pred ceeeeeee--ccCCccccccceecchhhhhcccC----CcccccccccCC
Q 002247 83 KIYHFIVS--TGSSKSGFLGEASIDFADFAAETE----PLTLSLPLKFAN 126 (947)
Q Consensus 83 ~iykfvVs--~GSSkSgiLGEasINlAdYa~a~k----p~tVSLPLk~cn 126 (947)
....|-|. .+.++..++|.+.|++++...... -..+++||..-+
T Consensus 61 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 61 STLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 34556555 244567899999999999885322 134678887655
No 360
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=33.28 E-value=3.4e+02 Score=32.81 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhH
Q 002247 246 DGSVEKLKNEIAVMMRQV----ELSELELLSLRKQVAKESKRAQDQTRQIISLS 295 (947)
Q Consensus 246 e~~iE~LK~E~~~L~R~a----d~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk 295 (947)
-.++++||+-|.-|-.-. +.-+-||+.||+.+-.|-+-...|.|||..++
T Consensus 568 k~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lk 621 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLK 621 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 468999999888775554 34456788888888777777777777776554
No 361
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=32.56 E-value=81 Score=29.69 Aligned_cols=84 Identities=21% Similarity=0.339 Sum_probs=45.0
Q ss_pred eeeeeccccCcccc-----eEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--
Q 002247 19 QFQCNQVPKLKKSA-----VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~gwdk-----L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
-.+|..+|...+.. ..|.+.|.. + .+. |+.|..+++ +|+|.-.-.+. .....+..+..+|-|--
T Consensus 22 v~~a~~L~~~d~~~~~dpyv~v~l~~~~-~-~~~---kT~v~~~t~---nP~wne~f~f~-i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 22 IIQAADLPAMDMGGTSDPYVKVYLLPDK-K-KKF---ETKVHRKTL---NPVFNETFTFK-VPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred EEEeeCCCCccCCCCCCCEEEEEEEcCC-C-Cce---ecccCcCCC---CCceeeeEEEe-CCHHHhCCCEEEEEEEeCC
Confidence 35677777643332 234455543 1 222 333444442 66665432222 11223345567776652
Q ss_pred cCCccccccceecchhhhhc
Q 002247 92 GSSKSGFLGEASIDFADFAA 111 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~ 111 (947)
+.++..+||+|.|++++...
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~ 112 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDL 112 (124)
T ss_pred CCCCCceeEEEEEecCcccC
Confidence 45677899999999998644
No 362
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=32.46 E-value=5.4e+02 Score=26.04 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH--Hhhhhhhhhcc---HHHHHHHHHHH
Q 002247 570 AERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDE--LSLIKDQNGVK---LQELSDQLEQK 644 (947)
Q Consensus 570 ~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~nee--L~~~~~~~e~k---l~eL~~q~d~K 644 (947)
...|..+|..|-..=...|.+-...+-.|-.+..+++.....+++.+.++... .+--+|+|.-- ..++.++||.+
T Consensus 29 l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~ 108 (126)
T PF09403_consen 29 LNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKE 108 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778887777777888888888888899999999999999999987553 44556666533 34456666666
Q ss_pred HHHHHHHHHHH
Q 002247 645 DKQIQKMYLEL 655 (947)
Q Consensus 645 ~k~ie~m~~el 655 (947)
+..-++.+.++
T Consensus 109 I~~~e~iI~~f 119 (126)
T PF09403_consen 109 IAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 363
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.46 E-value=1.1e+03 Score=29.68 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=36.4
Q ss_pred hhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002247 472 SMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEF 534 (947)
Q Consensus 472 ~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~f 534 (947)
+.+.++.+.+...-.-+.+-++.--.. +...++.....++.+|+.|+..+.++|+.....+
T Consensus 230 i~Is~~~~dP~~Aa~ilN~la~~Yi~~--~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l 290 (726)
T PRK09841 230 LELTMTGDDPQLITRILNSIANNYLQQ--NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKL 290 (726)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665544333333322111 2233466677888999999988888887655444
No 364
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=32.30 E-value=1.1e+02 Score=31.36 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHhh--------h-hhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhc
Q 002247 247 GSVEKLKNEIAVMMRQV--------E-LSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQN 312 (947)
Q Consensus 247 ~~iE~LK~E~~~L~R~a--------d-~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~ 312 (947)
+.|-.||.-=..|...- + -...+|++=+-++..+. ..|..|++.++-|+|+||.-|+.|-.+-
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv---~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQV---EKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46667776555553211 0 11233444344444333 3588999999999999999999998764
No 365
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=31.76 E-value=6.7e+02 Score=26.88 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=59.9
Q ss_pred hhHHHHHHHHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhHHHHHhhhhhh
Q 002247 397 EDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIK-QLTEDCQVLEQENQCLTSKLEKIQQQESMKS 475 (947)
Q Consensus 397 ~~q~~le~Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kme-QLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q 475 (947)
++...|..|++......+.+.|+.=+..+..+.+..-.....+...|. ++......+.. .+++. .
T Consensus 37 eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~-------~~~~~-r------ 102 (236)
T cd07651 37 EYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFAS-------SYTQK-R------ 102 (236)
T ss_pred HHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-H------
Confidence 355556667776655556667777777777776655555555555444 33333333322 11111 1
Q ss_pred hhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 002247 476 RECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQ 519 (947)
Q Consensus 476 ~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q 519 (947)
-.+...+..+..........|......|-..+..++.+..+
T Consensus 103 ---K~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~ 143 (236)
T cd07651 103 ---KKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQ 143 (236)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11234455666666667777777788887777777655544
No 366
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=31.59 E-value=6.8e+02 Score=26.90 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 002247 521 KELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMT 600 (947)
Q Consensus 521 ~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~ 600 (947)
.-+..=|+.|......+|+.....+.+-+......+..|.++|-+-.--.++-+++.... .+....+|-
T Consensus 76 ~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~----------~e~~~~~a~- 144 (204)
T PRK09174 76 PRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAK----------AEAERAAIE- 144 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-
Confidence 456777899999999999999999999999999999999999976655555544333221 112222222
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHH
Q 002247 601 EANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQ 643 (947)
Q Consensus 601 Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~ 643 (947)
..++.++..+..++...+++-...|..+..++-.
T Consensus 145 ---------~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~ 178 (204)
T PRK09174 145 ---------ASLEKKLKEAEARIAAIKAKAMADVGSIAEETAA 178 (204)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344577777777777776665555544444443
No 367
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=31.38 E-value=84 Score=30.35 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=44.8
Q ss_pred eeeeeccccCcccc---eEEEeeeCCCCCccccccccccccCccccCccchhhh-eecccCCccccccceeeeeee--cc
Q 002247 19 QFQCNQVPKLKKSA---VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTV-KLIREPKTGYIKEKIYHFIVS--TG 92 (947)
Q Consensus 19 qFhAtQVP~~gwdk---L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtv-kl~qD~~s~~~~e~iykfvVs--~G 92 (947)
...|.++|...+.. -||.|.=...|+.. ...|+.|..++| +|+|.-. .| +.....+....+.|-|. -.
T Consensus 21 vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~-~~~kT~v~k~t~---nP~w~e~F~f--~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 21 VLKARHLPKMDVSGLADPYVKVNLYYGKKRI-SKKKTHVKKCTL---NPVFNESFVF--DIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred EEEeeCCCccccCCCCCeEEEEEEEcCCcee-eeEcCccccCCC---CCccCceEEE--ECCHHHhCCCEEEEEEEECCC
Confidence 46677777654332 33433221113322 223445555553 5655332 22 23333445666776554 24
Q ss_pred CCccccccceecchhh
Q 002247 93 SSKSGFLGEASIDFAD 108 (947)
Q Consensus 93 SSkSgiLGEasINlAd 108 (947)
.++..++|++.|++..
T Consensus 95 ~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 95 VTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCccEEEEEECCcC
Confidence 5688999999998876
No 368
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=31.35 E-value=4.6e+02 Score=24.86 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002247 488 LESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQE 533 (947)
Q Consensus 488 Le~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~ 533 (947)
++.-+.+|+.+......+|+........|.+.++.|+.-+.+....
T Consensus 29 lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~ 74 (96)
T PF08647_consen 29 LEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSEL 74 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH
Confidence 4445556677777777777777777777777777777766665443
No 369
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=31.31 E-value=99 Score=30.63 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=50.4
Q ss_pred eeeeccccCc---ccceE--EEeeeCCCCCccccccccccccCccccCccchh-hheecccCCccccccceeeeeeec--
Q 002247 20 FQCNQVPKLK---KSAVM--ISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYV-TVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 20 FhAtQVP~~g---wdkL~--vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyE-tvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
.+|..+|... -.--| |.+.|. |+...| .|+.|..++ .||+|- +..| +.....+.+....|.|.-
T Consensus 22 i~A~nL~~~~~~g~~DpyVkv~l~~~--~~~~~k-~kT~v~k~t---~nP~~nE~f~F--~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 22 VKARNLVWDNGKTTADPFVKVYLLQD--GRKISK-KKTSVKRDD---TNPIFNEAMIF--SVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred EEeeCCCCccCCCCCCeEEEEEEEeC--Cccccc-cCCccccCC---CCCeeceeEEE--ECCHHHhCCcEEEEEEEeCC
Confidence 4566676532 22334 445553 443332 356666666 578874 4455 355567888889998884
Q ss_pred cCCccccccceecchh
Q 002247 92 GSSKSGFLGEASIDFA 107 (947)
Q Consensus 92 GSSkSgiLGEasINlA 107 (947)
+.++..+||++.|-..
T Consensus 94 ~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 94 EDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCCCCeeEEEEECCC
Confidence 6789999999998543
No 370
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.19 E-value=8.9e+02 Score=28.12 Aligned_cols=156 Identities=20% Similarity=0.308 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHH
Q 002247 416 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERL 495 (947)
Q Consensus 416 ~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~L 495 (947)
..|.-+|..|..+-...+.+.+-+.....-|..+...|.+.+..|--+-|+-+-.- ..+++.-|..|+.+.+.|
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i------sN~LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFI------SNTLLKKLQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 56777777777776666777777777777777788888887777777766643221 112233343333333333
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 002247 496 EDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQD 575 (947)
Q Consensus 496 E~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~ 575 (947)
=. .+++|=+.=...+..-|.-|..+|++.|....+-.+. -|.+|+.
T Consensus 97 ~~------------------------~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~----------~V~kL~k 142 (310)
T PF09755_consen 97 AL------------------------KYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEY----------LVNKLQK 142 (310)
T ss_pred HH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHH
Confidence 11 1111111112233334455566666666655544333 2667888
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH
Q 002247 576 EFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDE 622 (947)
Q Consensus 576 e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~nee 622 (947)
-+..|-.++.+.. .+...||..|.-||--|..-.+-
T Consensus 143 ~i~~Le~e~~~~q-----------~~le~Lr~EKVdlEn~LE~EQE~ 178 (310)
T PF09755_consen 143 KIERLEKEKSAKQ-----------EELERLRREKVDLENTLEQEQEA 178 (310)
T ss_pred HHHHHHHHHHHhH-----------HHHHHHHHHHHhHHHHHHHHHHH
Confidence 8877744443333 34457888888888877665443
No 371
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=30.97 E-value=76 Score=28.36 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=18.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 428 EIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 428 Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
|.+.+|..+-+|+.++.+|+..+..|++
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555566677777777777765
No 372
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=30.90 E-value=49 Score=29.51 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLE 440 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le 440 (947)
.|+..|+++|.+|...+..+..|+.-|+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555554444444554444
No 373
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=30.89 E-value=95 Score=29.73 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=29.5
Q ss_pred eeeeeee--ccCCccccccceecchhhhhcccCCcccccccccCCCCCe
Q 002247 84 IYHFIVS--TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAV 130 (947)
Q Consensus 84 iykfvVs--~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtv 130 (947)
...|-|. ...++..++|++.+.+++.+.. ....==+|+...++-++
T Consensus 63 ~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 63 KITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred EEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 4566665 3345668999999999999987 22333345555544433
No 374
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=30.86 E-value=3.2e+02 Score=31.70 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHH-hhHHHHHHHHHHHHHH
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKL-EKDNLAKQVFQLKDEL 804 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~-EkE~l~kqv~qLk~eL 804 (947)
|-.+|.+++..|++-...+++-+..+. .....-.+.+..-|-...+|+++|..-+. ....-.+.+.+|+.++
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~-------~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~I 77 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELS-------KLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDI 77 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 344555555555555544444443322 22222223333333333444444442211 2334567788899999
Q ss_pred HhhHHHHhhhhhhccccCCCC
Q 002247 805 QKKKEEINRTGKGLKKYGGPV 825 (947)
Q Consensus 805 ~kkE~~~~~~ek~lk~~~gr~ 825 (947)
+.+...+..+|+-|...+|..
T Consensus 78 k~r~~~l~DmEa~LPkkNGly 98 (330)
T PF07851_consen 78 KERRCQLFDMEAFLPKKNGLY 98 (330)
T ss_pred HHHHhhHHHHHhhCCCCCCcc
Confidence 999999999999997777765
No 375
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=30.75 E-value=7.4e+02 Score=27.03 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTED 449 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~D 449 (947)
.+...|+.++.++..++....+=.++++.-|.+|--+
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e 59 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE 59 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777665555555555566666665555
No 376
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.41 E-value=3.6e+02 Score=29.70 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 002247 675 ALSTEIHMLRTEIEKLRKEQ 694 (947)
Q Consensus 675 ~~s~ei~~Lkaeie~L~~e~ 694 (947)
.+..|++.|..|..+|...+
T Consensus 190 ~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 190 GLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HcccHHHHHHHHHHHHHHHH
Confidence 45566677777777776543
No 377
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.40 E-value=7.1e+02 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=16.7
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHHHHHH
Q 002247 421 KIRDQGDEIQFFKKHAEDLEIYIKQLTE 448 (947)
Q Consensus 421 KI~dL~~Eie~ykke~E~Le~kmeQLe~ 448 (947)
+|.++..+|...+.+++.|..++++.-.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666666666544
No 378
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=30.35 E-value=4.9e+02 Score=25.14 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHH
Q 002247 763 GNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDEL 804 (947)
Q Consensus 763 ~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL 804 (947)
..+..=.+-|......|...+..=......+++++-++...|
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333334444444444433
No 379
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=30.20 E-value=83 Score=30.80 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=50.6
Q ss_pred eeeeccccC--cccceEEEee--eCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeee--ccC
Q 002247 20 FQCNQVPKL--KKSAVMISLV--PDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS--TGS 93 (947)
Q Consensus 20 FhAtQVP~~--gwdkL~vSiV--p~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs--~GS 93 (947)
.+|..+|.. |--..||.+. |.+ .+ .++-|+.|..++ .||+|.-. |.=+.....++++-..|.|. .+.
T Consensus 22 ~~a~nL~~~~~~~~d~yVkv~l~~~~-~~--~~~~kT~v~~~~---~nP~fnE~-F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 22 LRARGLRQLDHAHTSVYVKVSLMIHN-KV--VKTKKTEVVDGA---ASPSFNES-FSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred EEecCCCcccCCCCCeEEEEEEEECC-EE--eeeeecccEeCC---CCCcccce-EEEECCHHHhCccEEEEEEEeCCCC
Confidence 456667654 2234465553 542 22 223355566665 57777543 22245556677777888886 357
Q ss_pred Cccccccceecchhhhh
Q 002247 94 SKSGFLGEASIDFADFA 110 (947)
Q Consensus 94 SkSgiLGEasINlAdYa 110 (947)
++..+||++.|....|.
T Consensus 95 ~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 95 RKSKLLGRVVLGPFMYA 111 (137)
T ss_pred CCcceEEEEEECCcccC
Confidence 78999999999865554
No 380
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=30.12 E-value=7.3e+02 Score=26.77 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhhhccccHHHHhh-hhhh--------hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh----hhHHHH
Q 002247 299 DALTIECEQLRKQNSIDIAEIER-RLQS--------EEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQD----SNAELI 365 (947)
Q Consensus 299 D~LK~E~EqLKs~~k~~~~~~~~-~lq~--------e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQE----SN~ELv 365 (947)
..|..|++.+.+-..+..-..+. .++. ...|..-++...--+.|..--..||.|-.+--.. .|--|-
T Consensus 63 ~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le 142 (221)
T PF05700_consen 63 PLLQAELERVASGEPMQGLDMSRYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLE 142 (221)
T ss_pred hhHHHHHHHHHcCCCCCccCHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 78999999998876532211110 0111 1113444555555667777777777763332222 355566
Q ss_pred HHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHH
Q 002247 366 LAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQ 445 (947)
Q Consensus 366 lavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQ 445 (947)
-.+..|+..|...+.+|..+....+ ..|..+ +.++..|+++-.++.+..-.....+..|+.+|.+
T Consensus 143 ~~~~~le~~l~~~k~~ie~vN~~RK------~~Q~~~---------~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 207 (221)
T PF05700_consen 143 AMLKRLEKELAKLKKEIEEVNRERK------RRQEEA---------GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQ 207 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777766553222 223322 5688899999999987655556688889999999
Q ss_pred HHHHHHHHhh
Q 002247 446 LTEDCQVLEQ 455 (947)
Q Consensus 446 Le~Dye~Lkq 455 (947)
|...+..+++
T Consensus 208 l~~~~~~~~~ 217 (221)
T PF05700_consen 208 LKRKAAELKE 217 (221)
T ss_pred HHHHHHHHhc
Confidence 8888887765
No 381
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=30.00 E-value=1.4e+02 Score=32.64 Aligned_cols=76 Identities=26% Similarity=0.394 Sum_probs=50.8
Q ss_pred HHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhHHH
Q 002247 274 RKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQ 353 (947)
Q Consensus 274 RKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e~~~~~l~eElr~El~yEKe~NaNL~lQ 353 (947)
||-+..+-- ..++..++..|..+-..|..-|-++|.-...++.... ...-+-.+...+++.|.|+.|+-|..|
T Consensus 178 RKALqae~e-k~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~------E~r~ieEkk~~eei~fLk~tN~qLKaQ 250 (259)
T KOG4001|consen 178 RKALQAENE-KTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSE------EEREIEEKKMKEEIEFLKETNRQLKAQ 250 (259)
T ss_pred HHHHHHhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433321 3467788888888888888888888764432222111 112233567889999999999999999
Q ss_pred HHH
Q 002247 354 LEK 356 (947)
Q Consensus 354 LqK 356 (947)
|+.
T Consensus 251 Leg 253 (259)
T KOG4001|consen 251 LEG 253 (259)
T ss_pred Hhh
Confidence 975
No 382
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.68 E-value=5.6e+02 Score=25.30 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=38.1
Q ss_pred HHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 002247 405 LAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLE 454 (947)
Q Consensus 405 Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lk 454 (947)
||+. +.++....|+.++.-+..+|..+.+..+.|+.++.++..-+..+-
T Consensus 64 lv~q-d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 64 LVKV-DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred Hhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 446677888999888888888888888888888888877766653
No 383
>PRK11820 hypothetical protein; Provisional
Probab=29.21 E-value=8.8e+02 Score=27.57 Aligned_cols=75 Identities=23% Similarity=0.431 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 674 EALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 674 ~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
-+.++||.+|++-+..+.. ++... + -.=+.+|=++|.-.+|.+-+-+
T Consensus 213 ~DI~EEi~RL~sHl~~f~~----~L~~~-----~---~vGrkLDFL~QEm~RE~NTigS--------------------- 259 (288)
T PRK11820 213 ADIAEELDRLKSHLKEFRE----ILKKG-----G---PVGRKLDFLMQELNREANTLGS--------------------- 259 (288)
T ss_pred cchHHHHHHHHHHHHHHHH----HHhcC-----C---CCCcchhHHHHHHhHHHHHHHH---------------------
Confidence 3678999999999998887 43332 1 1234466777777777764422
Q ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHH
Q 002247 754 LKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQL 800 (947)
Q Consensus 754 ~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qL 800 (947)
|++..++.+..-+=..+.|+++.||..+
T Consensus 260 -------------------Ks~~~~is~~vVe~K~elEkiREQVQNI 287 (288)
T PRK11820 260 -------------------KSNDAEITNLVVELKVLIEQMREQVQNI 287 (288)
T ss_pred -------------------ccCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555566666666667777777777654
No 384
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.12 E-value=5.7e+02 Score=25.23 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=25.1
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHH
Q 002247 757 ENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLK 801 (947)
Q Consensus 757 ekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk 801 (947)
..+.++..|..-++.|..+...|...+..-....+.++.++.+|.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655555555555555555554443
No 385
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=28.98 E-value=1.6e+02 Score=29.85 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred CccccCccchhhheecccC-------Cccccccceeeeeee--ccCCccccccceecchhhhhcccCCccccccccc
Q 002247 57 GTCLWENPIYVTVKLIREP-------KTGYIKEKIYHFIVS--TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKF 124 (947)
Q Consensus 57 G~C~W~dpIyEtvkl~qD~-------~s~~~~e~iykfvVs--~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~ 124 (947)
-+-.|...++=.+....++ ...........|-|. .+.++..+||++.|++.+..........-+||..
T Consensus 46 ~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 46 NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred CCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 3445776665444321111 122334455666554 2346889999999999986654344566666643
No 386
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.81 E-value=1.1e+03 Score=28.28 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLI-SINELECQVKELK 524 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~-tI~~Le~q~~sLe 524 (947)
.-|.-|+.++..+|++|.=|+-+.+-++. -|+..++.|..|+
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33445566666777777777666665555 4566667777766
No 387
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=28.64 E-value=92 Score=31.56 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=41.3
Q ss_pred ccccccCccccCccchh-hheecccCCccccccceeeeeeec---cCCccccccceecchhhhhcccCCcccccccccC
Q 002247 51 KVPVQNGTCLWENPIYV-TVKLIREPKTGYIKEKIYHFIVST---GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFA 125 (947)
Q Consensus 51 KA~VrnG~C~W~dpIyE-tvkl~qD~~s~~~~e~iykfvVs~---GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~c 125 (947)
|+.|-.++| ||+|. +..|-- . ...+...|.|.. +.++..+||++.|+|++. +...+.+.-.||...
T Consensus 70 KT~v~kktl---nPvfNE~F~f~v---~--l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l-~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 70 KTKIARKTL---DPLYQQQLVFDV---S--PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDL-DLSNLVIGWYKLFPT 139 (146)
T ss_pred eceecCCCC---CCccCCeEEEEE---c--CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccc-cCCCCceeEEecCCc
Confidence 445666776 55553 333311 1 456677777752 456778999999999995 445555566666654
No 388
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.55 E-value=3.5e+02 Score=24.10 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=30.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 002247 672 KHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISM 751 (947)
Q Consensus 672 ~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~ 751 (947)
+...|+.+|+.|.+.+..|..+.+. |...+..+|+||..+-+-|+++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~---------------------------------lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNA---------------------------------LRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677777777777777654333 3445567777787777777664
No 389
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.46 E-value=1.8e+02 Score=35.67 Aligned_cols=95 Identities=15% Similarity=0.257 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHH--hhhhhhhhccHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhHHHH
Q 002247 596 MKAMTEANEQRMQKAHLEEMLQKANDEL--SLIKDQNGVKLQELSDQLEQK-DKQIQKMYLELDHSSSQLIDEHKSEAQK 672 (947)
Q Consensus 596 ~~A~~Ea~eLR~qk~~LEe~Lqk~neeL--~~~~~~~e~kl~eL~~q~d~K-~k~ie~m~~el~~kSkqle~~~~~~~~~ 672 (947)
.+++.++.+++.+-...++....+-.+| ..-.+.|+-++++|... +.| -..|.++..+++.-.++.+.-+..-...
T Consensus 160 L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~-~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 160 LKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK-DIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777889999999999999999888888 44445677777777663 222 1256666777766566655322222223
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 002247 673 HEALSTEIHMLRTEIEKLR 691 (947)
Q Consensus 673 ~~~~s~ei~~Lkaeie~L~ 691 (947)
..+|+...+.++.++..|+
T Consensus 239 ~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 239 KNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3333333444444444443
No 390
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=28.44 E-value=9e+02 Score=27.28 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002247 675 ALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 675 ~~s~ei~~Lkaeie~L~~ 692 (947)
....+|..+++.+..+..
T Consensus 250 ~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 250 EAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 391
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=28.23 E-value=1.1e+02 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred ceeeeeeeccCCc--cccccceecchhhhh
Q 002247 83 KIYHFIVSTGSSK--SGFLGEASIDFADFA 110 (947)
Q Consensus 83 ~iykfvVs~GSSk--SgiLGEasINlAdYa 110 (947)
.-.+|.|-...+. ..++|.+.+++.+..
T Consensus 61 ~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 3346666655544 589999999999987
No 392
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=28.18 E-value=85 Score=28.26 Aligned_cols=25 Identities=44% Similarity=0.420 Sum_probs=12.5
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHH
Q 002247 756 GENEMLIGNLQAEVENLKVQQNKLQ 780 (947)
Q Consensus 756 dekE~~i~~L~~E~e~Lk~q~~~Lk 780 (947)
+|.+..|..||+|++-|+++...-+
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555555544433
No 393
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.17 E-value=1.5e+02 Score=31.19 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
|-..|+..+..|...++...++++.|..+...++.||+.|.+
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666777777888888888888899998865
No 394
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=28.12 E-value=5.9e+02 Score=25.04 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002247 487 ELESQSERLEDKIKQQSEEYSE 508 (947)
Q Consensus 487 eLe~q~e~LE~eLkeQ~~efSe 508 (947)
.+.+++..++..|.....+|..
T Consensus 9 ~l~~~~~~l~~~l~~~~~~~~~ 30 (202)
T PF01442_consen 9 SLSSRTEELEERLEELSDEIAD 30 (202)
T ss_dssp HHHHHHHHHHHCHCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333
No 395
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=28.08 E-value=7.2e+02 Score=26.04 Aligned_cols=87 Identities=16% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhh----HHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002247 584 MASKFDENEKLAMKAMTEANEQRMQ----KAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSS 659 (947)
Q Consensus 584 m~s~~~enEk~~~~A~~Ea~eLR~q----k~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kS 659 (947)
+...++++...+...+.+|...+.+ +...|+.|.+|+.+.+.|..+-. ..|.-+.+.+.+.+
T Consensus 35 I~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~---~~~~a~~~~~~~~~----------- 100 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKI---DSLESEFLIKKKNL----------- 100 (155)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-----------
Q ss_pred hhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 002247 660 SQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKE 693 (947)
Q Consensus 660 kqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e 693 (947)
++.....+.+||+-...-+++++-+
T Consensus 101 ---------ea~L~~~~~~~~~~~~~~~~~~~~~ 125 (155)
T PRK06569 101 ---------EQDLKNSINQNIEDINLAAKQFRTN 125 (155)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHh
No 396
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.04 E-value=5.6e+02 Score=25.55 Aligned_cols=85 Identities=25% Similarity=0.222 Sum_probs=48.8
Q ss_pred HHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHH
Q 002247 286 DQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELI 365 (947)
Q Consensus 286 dLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e~~~~~l~eElr~El~yEKe~NaNL~lQLqKTQESN~ELv 365 (947)
.|..++-+.|..++-|..+=++|++....=.+....+.+.-.+....+.+++..+.-+|--.-.|..+|-|+|---..|=
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~le 99 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILE 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34555555555555555555566655441112222222333335555677777777777666678888888887666665
Q ss_pred HHHhh
Q 002247 366 LAVKD 370 (947)
Q Consensus 366 lavqD 370 (947)
+.+.|
T Consensus 100 l~l~e 104 (107)
T PF09304_consen 100 LKLAE 104 (107)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 397
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.04 E-value=5.3e+02 Score=24.48 Aligned_cols=25 Identities=4% Similarity=0.076 Sum_probs=14.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 002247 429 IQFFKKHAEDLEIYIKQLTEDCQVL 453 (947)
Q Consensus 429 ie~ykke~E~Le~kmeQLe~Dye~L 453 (947)
+..|+.+...|-.++.+|+.+..+.
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~ 32 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666655444
No 398
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=27.74 E-value=9.9e+02 Score=27.55 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=67.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 002247 673 HEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMR 752 (947)
Q Consensus 673 ~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k 752 (947)
--+|..-|+.++..+..|.. ..++..+..+...|......+.+|..+|..+++.+..+...+..-.
T Consensus 50 A~~fA~~ld~~~~kl~~Ms~--------------~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~ 115 (301)
T PF06120_consen 50 AIEFADSLDELKEKLKEMSS--------------TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG 115 (301)
T ss_pred HHHHHHhhHHHHHHHHhcCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34678888888888888876 3445567778888888888888888888888888887776655522
Q ss_pred cccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHH
Q 002247 753 SLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQL 800 (947)
Q Consensus 753 ~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qL 800 (947)
. .+-...+..+.+ +...-.....+.+-|..++...+.++.++...
T Consensus 116 ~--~~~~~~~n~~~~-~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~ 160 (301)
T PF06120_consen 116 I--TENGYIINHLMS-QADATRKLAEATRELAVAQERLEQMQSKASET 160 (301)
T ss_pred C--CcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 121222222221 33344444455555554444444444444333
No 399
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.61 E-value=1.4e+03 Score=29.26 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=21.9
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 002247 663 IDEHKSEAQKHEALSTEIHMLRTEIEKLRKE 693 (947)
Q Consensus 663 e~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e 693 (947)
++|++.=.+......++|..+..+|.++++.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566666666777888888888777764
No 400
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.50 E-value=9.1e+02 Score=30.49 Aligned_cols=130 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCCCCCC--------CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhH-----hHHHHHHHhhHHHhhHHH
Q 002247 236 TNSPDDNLG--------SDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRA-----QDQTRQIISLSSERDALT 302 (947)
Q Consensus 236 tnsse~~L~--------se~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrg-----qdLs~Evs~Lk~ERD~LK 302 (947)
..++...+| ....+..+=.+...+...+..+...|+.+-.++.+....+ -.+.+|+..+++.+++|+
T Consensus 292 ~s~~~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~ 371 (632)
T PF14817_consen 292 VSDESQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLSGSSEREALALELEVAGLKASLNALR 371 (632)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhccccHHHHhhhhhhhhh----HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhhhhHHHHH
Q 002247 303 IECEQLRKQNSIDIAEIERRLQSEEH----LKFLQEEIREELNYEKEVSAHLRLQLEKTQDSNAELIL 366 (947)
Q Consensus 303 ~E~EqLKs~~k~~~~~~~~~lq~e~~----~~~l~eElr~El~yEKe~NaNL~lQLqKTQESN~ELvl 366 (947)
.+|..|+..-. ........++..|- ...+..+..+-+.-.=--|.+++.+|.+.+...-+++.
T Consensus 372 se~q~L~~~~~-~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~ 438 (632)
T PF14817_consen 372 SECQRLKEAAA-ERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQ 438 (632)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHh
No 401
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.28 E-value=3.3e+02 Score=31.59 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhh
Q 002247 442 YIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESL 482 (947)
Q Consensus 442 kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~ 482 (947)
..++|+.||..|.+-+-...-||++ +.. +|.-|+++.
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKlee--l~~--lQ~~C~ssI 41 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEE--LSK--LQDKCSSSI 41 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHH
Confidence 4456666888887766665556665 433 667777543
No 402
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=27.25 E-value=8.2e+02 Score=29.65 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 002247 518 CQVKELKRELDKQAQEFEDDIDAVTH 543 (947)
Q Consensus 518 ~q~~sLekELe~Qaq~fe~dl~a~~~ 543 (947)
.++-.---.+-.|...++.++++|..
T Consensus 228 ~~~~~ey~~~~~q~~~~~del~Sle~ 253 (447)
T KOG2751|consen 228 DQYWREYNNFQRQLIEHQDELDSLEA 253 (447)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHH
Confidence 33333333445566667777777754
No 403
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.24 E-value=1.3e+03 Score=28.81 Aligned_cols=197 Identities=22% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhH
Q 002247 532 QEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKN--TVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQK 609 (947)
Q Consensus 532 q~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~n--a~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk 609 (947)
+....++..+.....|..+|+-..++.+..+--=| .-+-+.|+.+.++|| |=....+++..|-++=..-
T Consensus 167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLs---------n~ekl~~~~~~a~~~L~ge 237 (557)
T COG0497 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLS---------NSEKLAEAIQNALELLSGE 237 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHhCC
Q ss_pred H---HHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHH
Q 002247 610 A---HLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTE 686 (947)
Q Consensus 610 ~---~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkae 686 (947)
. -+-..|..|-.-|..+.+ |..++.++.+.++.=.-+++..+.+|.+....++ -+....+..-.=+..|+.=
T Consensus 238 ~~~~~~~~~l~~a~~~l~~~~~-~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le----~Dp~~L~~ve~Rl~~L~~l 312 (557)
T COG0497 238 DDTVSALSLLGRALEALEDLSE-YDGKLSELAELLEEALYELEEASEELRAYLDELE----FDPNRLEEVEERLFALKSL 312 (557)
T ss_pred CCchhHHHHHHHHHHHHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhc--cccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 687 IEKLRKEQYNLSEHG--KRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 687 ie~L~~e~~~L~e~~--~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
..|-......|.+.. ...+++.+..+.... .+|+.++..++.+..++-..|+..|.
T Consensus 313 ~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~-----------~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 313 ARKYGVTIEDLLEYLDKIKEELAQLDNSEESL-----------EALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 404
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.21 E-value=3.9e+02 Score=24.98 Aligned_cols=41 Identities=32% Similarity=0.454 Sum_probs=18.9
Q ss_pred HhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHH
Q 002247 762 IGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKD 802 (947)
Q Consensus 762 i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~ 802 (947)
|..||-|+++||...+.|.+-.+...--.|+|...--||+.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444333344444444444443
No 405
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=26.71 E-value=1.1e+02 Score=35.18 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=35.1
Q ss_pred chhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHH
Q 002247 714 GETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNL 793 (947)
Q Consensus 714 ~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l 793 (947)
..+.-.+..-..+.+.|..+|..++.-+-.+...+..|...=..-+..|..|++.+..+..-..+||-+++. +
T Consensus 66 ~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt-------~ 138 (326)
T PF04582_consen 66 QDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVST-------Q 138 (326)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh-------h
Confidence 333444455566666777777777777777777777777777778888888999999999999999888875 4
Q ss_pred HHHHHHHHHHHHhhHHHHhh---hhhhccccCCCC
Q 002247 794 AKQVFQLKDELQKKKEEINR---TGKGLKKYGGPV 825 (947)
Q Consensus 794 ~kqv~qLk~eL~kkE~~~~~---~ek~lk~~~gr~ 825 (947)
.-+|..|++.+++-|..... +..=|+-.+|.+
T Consensus 139 aL~ItdLe~RV~~LEs~~s~~l~f~~PL~~~~g~v 173 (326)
T PF04582_consen 139 ALNITDLESRVKALESGSSSPLTFSAPLKLDDGVV 173 (326)
T ss_dssp HHHHHHHHHHHHHHHTTTTTT-EE-TTEEECTTEE
T ss_pred cchHhhHHHHHHHHhcCCCCCceecCCeEecCCEE
Confidence 55666666666666664333 345555555544
No 406
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.65 E-value=1.7e+03 Score=29.90 Aligned_cols=46 Identities=24% Similarity=0.401 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002247 487 ELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQ 532 (947)
Q Consensus 487 eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq 532 (947)
.++-...+.|++++.+..++-.--.++-+|+.++...+++++.-..
T Consensus 626 ~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~ 671 (1072)
T KOG0979|consen 626 VLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQK 671 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999888888888888888888888888877776554
No 407
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=26.65 E-value=8.8e+02 Score=26.62 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=31.8
Q ss_pred cchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 002247 713 TGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISM 751 (947)
Q Consensus 713 ~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~ 751 (947)
....+-.+++-..+++.|+.++...+.+......+|+.+
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445667888888899999999988888888888888763
No 408
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=26.28 E-value=2.3e+02 Score=26.28 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=31.6
Q ss_pred ceeeeeeec--cCCccccccceecchhhhhcccCCccccccccc---CCCCCeeeeeee
Q 002247 83 KIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKF---ANSGAVLHVTIE 136 (947)
Q Consensus 83 ~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~---cnsGtvLHVtIQ 136 (947)
...+|.|.- ..++..+||.+.+++++.... .+..+.|+... +..|+| ++.+|
T Consensus 61 ~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~G~i-~l~~~ 117 (119)
T cd08377 61 DVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG-ERKWYALKDKKLRTRAKGSI-LLEMD 117 (119)
T ss_pred CEEEEEEEECCCCCCCceeeEEEEEHHHCCCC-CceEEECcccCCCCceeeEE-EEEEE
Confidence 456666652 345778999999999997653 34444444332 335544 45544
No 409
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.27 E-value=2.8e+02 Score=25.21 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSK 463 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~K 463 (947)
++..|.+||..|..--+-.+.++-.|..+..++..+-.-|.+-|---..|
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999987777778999999999999998888888855433333
No 410
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.05 E-value=5.2e+02 Score=23.72 Aligned_cols=68 Identities=25% Similarity=0.338 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHHHhHHH---HHHHHHHHHHhhhc------------ccchhHHHHhhHHHHHHHHHHHHHHHHhhHhH
Q 002247 721 QKWNRERDDLEKKFASAKQ---EAAKAHEELISMRS------------LKGENEMLIGNLQAEVENLKVQQNKLQNSLIE 785 (947)
Q Consensus 721 ~~~~~er~~L~~~ia~lk~---Ea~~~~~eL~~~k~------------~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~ 785 (947)
+....+...+...+..++. ++.-+..||..+.. .+...+.++..|....+.+......|+..+..
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~ 87 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKY 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555533 44445555555332 34456777777777777776666666555443
Q ss_pred HHH
Q 002247 786 EKL 788 (947)
Q Consensus 786 ~~~ 788 (947)
-+.
T Consensus 88 l~~ 90 (106)
T PF01920_consen 88 LEK 90 (106)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 411
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=25.66 E-value=5.3e+02 Score=24.17 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002247 488 LESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDA 540 (947)
Q Consensus 488 Le~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a 540 (947)
+++|...++.++..|..+.--...+|.+||..-..+.+.-+..+..+-..|++
T Consensus 23 ~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 23 YKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566667777777777777788888888888877776666666555543
No 412
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=25.64 E-value=1.1e+03 Score=27.55 Aligned_cols=125 Identities=27% Similarity=0.252 Sum_probs=77.0
Q ss_pred HHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 002247 611 HLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKL 690 (947)
Q Consensus 611 ~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L 690 (947)
.-|+.++||...|+--++-|. +=++..|.+.+..-+-++-.||-..--||... ..+.+.=.-+|..|+|+|+-|
T Consensus 190 ~~eerv~kAs~~L~~yr~kng--vfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tv----ks~m~~~nPqi~~LkarieSl 263 (372)
T COG3524 190 KAEERVKKASNDLTDYRIKNG--VFDPKAQAEVQMSLVSKLEDELIVIQAQLDTV----KSVMNPENPQIPGLKARIESL 263 (372)
T ss_pred HHHHHHHHHHhHHHHHHhhcC--ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCCcchhHHHHHHHH
Confidence 347888999999998555444 34667777777777777777876666666622 233444466899999999999
Q ss_pred HHhhhhhhhhccccCCCCCccccchh--hhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 691 RKEQYNLSEHGKRRDDNKPKVSTGET--DMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 691 ~~e~~~L~e~~~~~e~e~~k~s~~e~--e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
+++..-=.-. -+.++. ...-+.-.+++-.|+.++ +++....+...|...|.
T Consensus 264 rkql~qe~q~----------isag~~~~sl~~qaAefq~l~lE~~f--Aekay~AAl~SlEsAri 316 (372)
T COG3524 264 RKQLLQEKQA----------ISAGGSSQSLSNQAAEFQRLYLENTF--AEKAYAAALTSLESARI 316 (372)
T ss_pred HHHHHHHHHH----------hcCCCCccchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 9865432111 133433 334444445555555444 45555555655555444
No 413
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=25.52 E-value=1.6e+03 Score=29.17 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=22.3
Q ss_pred hhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhcc
Q 002247 349 HLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISS 384 (947)
Q Consensus 349 NL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ 384 (947)
+|+.|+-|.-+|...+.-- .|.+|||+-+.|+-.
T Consensus 440 kLk~eilKAk~s~~~~~~~--~L~e~IeKLk~E~d~ 473 (762)
T PLN03229 440 KLKEQILKAKESSSKPSEL--ALNEMIEKLKKEIDL 473 (762)
T ss_pred HHHHHHHhcccccCCCCCh--HHHHHHHHHHHHHHH
Confidence 4556666665555544433 677999988877754
No 414
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.43 E-value=7.5e+02 Score=29.16 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHH
Q 002247 681 HMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEM 760 (947)
Q Consensus 681 ~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~ 760 (947)
+.|.+.|.|++....-| +..-..++...+|-++|...-.-|+.+...++.=+-.|+.-.+..|.
T Consensus 71 ~llq~kirk~~e~~egl----------------r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~ 134 (401)
T PF06785_consen 71 QLLQTKIRKITEKDEGL----------------RKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEG 134 (401)
T ss_pred HHHHHHHHHHHhccHHH----------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHH
Q 002247 761 LIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNL 793 (947)
Q Consensus 761 ~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l 793 (947)
.+..+..|-.-|..|.+.+++-.-+.+.|--.|
T Consensus 135 li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 135 LIRHLREENQCLQLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHH
No 415
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=1.3e+03 Score=28.21 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=47.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHh
Q 002247 599 MTEANEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELD 656 (947)
Q Consensus 599 ~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~ 656 (947)
=..-+.++.+++-|| .+.++.+.+-...++-++.|..|.-++..+.++|.-+..-.+
T Consensus 261 es~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwe 317 (521)
T KOG1937|consen 261 ESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWE 317 (521)
T ss_pred HhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999 899999999999999999999999998888887765554443
No 416
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.03 E-value=1.6e+03 Score=29.21 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHH
Q 002247 487 ELESQSERLEDKIKQQSEEY-----SESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTE 547 (947)
Q Consensus 487 eLe~q~e~LE~eLkeQ~~ef-----Se~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~E 547 (947)
.|--++..|.+.|++|.+-- .+|-..|- -+.||+-=|..|.+....-++.+.+-+.|
T Consensus 398 qLrRrLrilnqqlreqe~~~k~~~~~~~n~El~----sLqSlN~~Lq~ql~es~k~~e~lq~knee 459 (861)
T PF15254_consen 398 QLRRRLRILNQQLREQEKAEKTSGSQDCNLELF----SLQSLNMSLQNQLQESLKSQELLQSKNEE 459 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcccchhhH----HHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Confidence 44456667788888876654 34444443 33678888888888887777777665543
No 417
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=24.88 E-value=4.9e+02 Score=28.92 Aligned_cols=73 Identities=26% Similarity=0.369 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHhhhhhhhhHHH--------HHHHHHHHHHHHhhHHHHHHHHH
Q 002247 547 EQEQRAIRAEEELRKTRWKNTVTAER-LQDEFRRLSVDMASKFDENEKL--------AMKAMTEANEQRMQKAHLEEMLQ 617 (947)
Q Consensus 547 EqEqRai~aeeaLrk~r~~na~~~e~-LQ~e~~~LS~qm~s~~~enEk~--------~~~A~~Ea~eLR~qk~~LEe~Lq 617 (947)
+-++|+.+|.+-|..+--..+.++.. -.+.+..|+.++..+..+-|.+ ++.++.+|..|+..+..||.-+.
T Consensus 94 d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~~~~ 173 (254)
T PF03194_consen 94 DCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEKELE 173 (254)
T ss_pred HHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445555555555544433333322 3667777888887777777766 67788999999999999999544
Q ss_pred Hh
Q 002247 618 KA 619 (947)
Q Consensus 618 k~ 619 (947)
.+
T Consensus 174 ~~ 175 (254)
T PF03194_consen 174 EY 175 (254)
T ss_pred hh
Confidence 44
No 418
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.82 E-value=1.3e+03 Score=29.76 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccc
Q 002247 634 LQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVST 713 (947)
Q Consensus 634 l~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~ 713 (947)
++.-..-+......++.+...|+....+++..+..-+.........-..|..+.++|..+...+.+.+
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~------------ 571 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA------------ 571 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred chhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccc--hhHHHHhhHHHHHHHHHHH
Q 002247 714 GETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKG--ENEMLIGNLQAEVENLKVQ 775 (947)
Q Consensus 714 ~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kd--ekE~~i~~L~~E~e~Lk~q 775 (947)
+.+....+..++.|++.+..+|..++.... .+...+......+..++.+
T Consensus 572 -------------~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 572 -------------EKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEK 622 (782)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhh
No 419
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.50 E-value=1.1e+03 Score=26.86 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=48.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHH
Q 002247 482 LATIKELESQSERLEDKIKQQSEEYSESL-ISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQ 548 (947)
Q Consensus 482 ~~~I~eLe~q~e~LE~eLkeQ~~efSe~l-~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~Eq 548 (947)
-+.+-.+++++..|...+.....+..... ..++....++..|+.|.+-....++.-+..+..+..+.
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~ 308 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEA 308 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888888887777665543 25677777888888888888888888777777666543
No 420
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.40 E-value=2.4e+02 Score=30.27 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 676 LSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 676 ~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
.++|.+.|..+|-+|..-...|-... |..+.|++.=.+.--.-+|.++|+.|++|+....+-|.++|.
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~----------s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTC----------SYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665444443332 233445555555556677888899999999988888888776
No 421
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=24.36 E-value=8.9e+02 Score=27.55 Aligned_cols=75 Identities=20% Similarity=0.372 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 674 EALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 674 ~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
-+.++||.+|++-+..+.. ++... + ..=+.+|=++|.-.+|.+-+-+
T Consensus 216 ~DI~EEl~RL~sHl~~f~~----~L~~~-----~---~vGrkLDFL~QEmnRE~NTigS--------------------- 262 (291)
T TIGR00255 216 IDIAEEIDRLDSHVKEFYN----ILKKG-----E---AVGRKLDFMMQELNRESNTLAS--------------------- 262 (291)
T ss_pred cchHHHHHHHHHHHHHHHH----HHhcC-----C---CcCcchhHHHHHHhHHHHHHHH---------------------
Confidence 3578999999999998887 43322 1 1234567777777777774432
Q ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHH
Q 002247 754 LKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQL 800 (947)
Q Consensus 754 ~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qL 800 (947)
|++...+.+..-+=..+.|+++.||..+
T Consensus 263 -------------------Ks~d~~is~~vVe~K~eiEkiREQVQNI 290 (291)
T TIGR00255 263 -------------------KAIDADITNLAVEMKVLIEKIKEQIQNI 290 (291)
T ss_pred -------------------ccCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555556666666666777777777644
No 422
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.33 E-value=2.3e+02 Score=29.48 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHH
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQ 451 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye 451 (947)
+...+.+.|.+|..||+.-..|.+.|..|.+.|+.+|.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455666666666777677788888888888888873
No 423
>cd00205 rhv_like Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A virus, rhinovirus, foot-and-mouth disease virus and encephalomyocarditis virus; common structure is an 8-stranded beta sandwich
Probab=23.82 E-value=1.3e+02 Score=29.99 Aligned_cols=39 Identities=23% Similarity=0.502 Sum_probs=29.5
Q ss_pred CcccccccccceeEEEEEeeeeeccccCcccceEEEeeeCCCCCccc
Q 002247 1 MFKSWRNDKNKIKAVFKLQFQCNQVPKLKKSAVMISLVPDDVGKPTF 47 (947)
Q Consensus 1 MFksWR~eK~KiK~vFklqFhAtQVP~~gwdkL~vSiVp~DtGK~Ta 47 (947)
||.-||. -.+|+|+|.+++-.. -+|.|.++|.....++.
T Consensus 50 ~f~y~rg-----~l~~~~~~~~~~~~~---G~l~v~~~P~~~~~~~~ 88 (178)
T cd00205 50 YFTYWRG-----DLEVTVQFNGSKFHT---GRLLVAYVPPGAPAPTT 88 (178)
T ss_pred hheeeec-----cEEEEEEEecCCCcc---EEEEEEEeCCCCCCCCc
Confidence 4556775 478888888888654 68999999998776654
No 424
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.65 E-value=6.3e+02 Score=29.02 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=45.1
Q ss_pred hhhhhHhhhhhHHHHHHHHHH-------hHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHH
Q 002247 715 ETDMLIQKWNRERDDLEKKFA-------SAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEK 787 (947)
Q Consensus 715 e~e~~l~~~~~er~~L~~~ia-------~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~ 787 (947)
..+..+.....+..+++++|- -|-.|-..+.-++..+|-.=.+.|+.+--++-+++...-.+.-+|+.+..
T Consensus 74 dse~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~-- 151 (302)
T PF09738_consen 74 DSEASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDS-- 151 (302)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345566666777777777772 22222222222222222222334445555555555544455555555443
Q ss_pred HhhHHHHHHHHHHHHHHHhhHHHHhh
Q 002247 788 LEKDNLAKQVFQLKDELQKKKEEINR 813 (947)
Q Consensus 788 ~EkE~l~kqv~qLk~eL~kkE~~~~~ 813 (947)
|+.++..|+..|..+++-+..
T Consensus 152 -----L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 152 -----LREELDELREQLKQRDELIEK 172 (302)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555554433
No 425
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.54 E-value=2e+02 Score=25.12 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHh
Q 002247 721 QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIG 763 (947)
Q Consensus 721 ~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~ 763 (947)
.....+++.|..+++.++++...+..++..++.-.+-.|...+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4456677778888888888888888888877666665555444
No 426
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=23.49 E-value=36 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=30.9
Q ss_pred CccccccceecchhhhhcccCCcccccccccCCC
Q 002247 94 SKSGFLGEASIDFADFAAETEPLTLSLPLKFANS 127 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a~kp~tVSLPLk~cns 127 (947)
.-.+++||+|--+|.-+......-|=|||..|+.
T Consensus 76 ~a~smlGEiTp~mA~AI~~S~A~KiLiPl~~~~~ 109 (131)
T PF12953_consen 76 IANSMLGEITPAMAEAIAQSPAKKILIPLNRCNI 109 (131)
T ss_pred ccCcccccccHHHHHHHhcCCCCEEEEeecCCCC
Confidence 3568999999999999999999999999999964
No 427
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.32 E-value=90 Score=23.25 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHhhHHHHHHH
Q 002247 414 EVDMLKQKIRDQGDEIQFFKK 434 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykk 434 (947)
|+..|+.+|.||.+++.++++
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 678889999999988887653
No 428
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=23.16 E-value=5.7e+02 Score=23.16 Aligned_cols=89 Identities=26% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHH-----HHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHH
Q 002247 728 DDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQ-----AEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKD 802 (947)
Q Consensus 728 ~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~-----~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~ 802 (947)
++....++-+..+.......|..+....++....+.... .++.....-...|...+..-..+.+.++.+|.+...
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHhhhhh
Q 002247 803 ELQKKKEEINRTGK 816 (947)
Q Consensus 803 eL~kkE~~~~~~ek 816 (947)
.|...--....+++
T Consensus 81 ~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 81 ELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
No 429
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.96 E-value=2.2e+02 Score=27.52 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 002247 276 QVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEHLKFLQEEIREELNYEKE 345 (947)
Q Consensus 276 Qi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e~~~~~l~eElr~El~yEKe 345 (947)
.+.+-..+-.++..++..++.+.+.|+.|++.|+. +...+.+-.|++|+|=|.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~-----------------~~dyiEe~AR~~Lg~vk~ 80 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG-----------------GQEAIEERARNELGMVKP 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----------------cHHHHHHHHHHHcCCCCC
No 430
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.82 E-value=9.8e+02 Score=25.83 Aligned_cols=149 Identities=12% Similarity=0.124 Sum_probs=85.2
Q ss_pred hhHHHHHHHHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhh
Q 002247 397 EDQLALEALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSR 476 (947)
Q Consensus 397 ~~q~~le~Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~ 476 (947)
++...|..|++...+..+.+.+..-...+..+.+..-.....+...|..+-.+...+..+ +...
T Consensus 37 eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~-------~~~~--------- 100 (239)
T cd07647 37 DYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREK-------QKEE--------- 100 (239)
T ss_pred HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH---------
Confidence 455667778877666677888888888888777766666666666555543222222221 1111
Q ss_pred hchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHH
Q 002247 477 ECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAE 556 (947)
Q Consensus 477 EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~ae 556 (947)
.-.+...+.-+......+...|....+.|-..+..++.+...+...... ..-.+ -...+.++..|.
T Consensus 101 -~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~------~~~ke-------~eK~~~K~~k~~ 166 (239)
T cd07647 101 -RKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSG------AQPKE-------AEKLKKKAAQCK 166 (239)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCHHH-------HHHHHHHHHHHH
Confidence 1112234455556666667777888888888888775554444322210 00011 123455666666
Q ss_pred HHHHHHhhhhhhhHHHHHH
Q 002247 557 EELRKTRWKNTVTAERLQD 575 (947)
Q Consensus 557 eaLrk~r~~na~~~e~LQ~ 575 (947)
.+..+++=.|...++.|+.
T Consensus 167 ~~~~~a~~~Y~~~v~~l~~ 185 (239)
T cd07647 167 TSAEEADSAYKSSIGCLED 185 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666653
No 431
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.44 E-value=6.2e+02 Score=25.87 Aligned_cols=55 Identities=22% Similarity=0.425 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002247 485 IKELESQSERLEDKIKQQSEEYSES----LISINELECQVKELKRELDKQAQEFEDDID 539 (947)
Q Consensus 485 I~eLe~q~e~LE~eLkeQ~~efSe~----l~tI~~Le~q~~sLekELe~Qaq~fe~dl~ 539 (947)
|.+++..+..|..+|...+.+|.+. -..|.+|=-.|..-=+.+|+|+.++-.++.
T Consensus 62 l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~IEkQte~LteEL~ 120 (126)
T PF07028_consen 62 LKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKFIEKQTEALTEELT 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 7788999999999999999999984 578989989999999999999988877764
No 432
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.42 E-value=1.1e+03 Score=26.22 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhh-------hc----cHHHHH
Q 002247 570 AERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQN-------GV----KLQELS 638 (947)
Q Consensus 570 ~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~-------e~----kl~eL~ 638 (947)
+-.||.|+.++-..|.--++.=+-+--+-.. +.-..|+-.||.-|.|.=-.|+-.+||- ++ .|.+-+
T Consensus 3 ~RKLQ~Eid~~lKkv~EG~~~F~~i~~K~~~--~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~R 80 (233)
T PF04065_consen 3 KRKLQQEIDRTLKKVQEGVEEFDEIYEKVES--ATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENR 80 (233)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHH
Confidence 4578999888888887666555444433322 4556788888887777666665555542 22 344444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh-----------hhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 002247 639 DQLEQKDKQIQKMYLELDHSSSQLI-----------DEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHG 701 (947)
Q Consensus 639 ~q~d~K~k~ie~m~~el~~kSkqle-----------~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~ 701 (947)
..|.......- ..|-+.|.|++. -..+-..+...-++.=|+.|...|+.+-.|...|+-..
T Consensus 81 k~IE~~MErFK--~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~ 152 (233)
T PF04065_consen 81 KLIEEQMERFK--VVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQK 152 (233)
T ss_pred HHHHHHHHHHH--HHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44443111110 122223333322 22344455566666667777777777776666665544
No 433
>PRK12705 hypothetical protein; Provisional
Probab=22.32 E-value=1.5e+03 Score=27.86 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHHHHH-HHHHhhHHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 596 MKAMTEA-NEQRMQKAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 596 ~~A~~Ea-~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle 663 (947)
.+|+.+| .+....+..+|..+..-..+++. .+.++.+...+++.|...+++-...|+.+.+++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~----~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~ 115 (508)
T PRK12705 51 EAALLEAKELLLRERNQQRQEARREREELQR----EEERLVQKEEQLDARAEKLDNLENQLEEREKALS 115 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 33444444455555555555554 2444555555666666666555555555555554
No 434
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=1.9e+03 Score=28.78 Aligned_cols=135 Identities=20% Similarity=0.150 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccch
Q 002247 678 TEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGE 757 (947)
Q Consensus 678 ~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kde 757 (947)
..|.-|+++.|.|..-.+ +++..+................-++-..+++-+|+..+.+..+++.+.+.-+.
T Consensus 674 rqIael~~~lE~L~~t~~---------~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~ 744 (1104)
T COG4913 674 RQIAELQARLERLTHTQS---------DIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQ 744 (1104)
T ss_pred HHHHHHHHHHHHhcCChh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 445666666666654222 22333333344444455555555666778889999999999999999998754
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHh---hHHHHHHHHHHHHHHHhhHHHHhhhhhhccccCC
Q 002247 758 NEMLIGNLQAEVENLKVQQNKLQNSLIEEKLE---KDNLAKQVFQLKDELQKKKEEINRTGKGLKKYGG 823 (947)
Q Consensus 758 kE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~E---kE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~g 823 (947)
.+.+.+|.++..+=.|..-=.|-++-+..- -+-|+|+|--....|..-++.+.......|+...
T Consensus 745 --~~t~~~q~~~~a~f~q~a~~~h~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~ 811 (1104)
T COG4913 745 --GMTGALQALGAAHFPQVAPEQHDDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDT 811 (1104)
T ss_pred --hhhHHHHHHHHhhhhhhChHhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcch
Confidence 688899999998877777666666644433 3478888888888888888888777777776644
No 435
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=22.00 E-value=5.7e+02 Score=22.82 Aligned_cols=96 Identities=15% Similarity=0.290 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Q 002247 479 IESLATIKELESQSERLEDKIKQQSEEYSESLISIN---ELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRA 555 (947)
Q Consensus 479 Ss~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~---~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~a 555 (947)
+..+..++++...|..+...++.-..-+...+.... .++.++..|-.++...+......|..|..... ........
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~-~~~~~~~~ 81 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNE-DSEGEEPS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcccCCC
Q ss_pred HHHHHHHhhhhhhhHHHHHH
Q 002247 556 EEELRKTRWKNTVTAERLQD 575 (947)
Q Consensus 556 eeaLrk~r~~na~~~e~LQ~ 575 (947)
....|--+--.+...-+|++
T Consensus 82 ~~~~ri~~nq~~~L~~kf~~ 101 (103)
T PF00804_consen 82 SNEVRIRKNQVQALSKKFQE 101 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
No 436
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=21.74 E-value=6.4e+02 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=27.9
Q ss_pred CCCCchHHHHHHHHHHHHHhHhHHHHHHHHHhhh
Q 002247 884 SDEGNFTEVLMEVSLLKEKNKRMETELKEMQERY 917 (947)
Q Consensus 884 ~~~~~~~~~~~~~~~lk~r~~~~e~el~~m~~ry 917 (947)
.-...+.++|.|++.+-.=...+|..+-+++-+.
T Consensus 51 ~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 51 SLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446678999999999999999999988887654
No 437
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.66 E-value=1.4e+02 Score=34.63 Aligned_cols=91 Identities=14% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHh----hhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHH
Q 002247 728 DDLEKKFASAKQEAAKAHEELIS----MRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDE 803 (947)
Q Consensus 728 ~~L~~~ia~lk~Ea~~~~~eL~~----~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~e 803 (947)
.+|...+.-+++|++..+..... +...+...+.+...|.+.+..+.....+|-+.+.+ +...+..++..
T Consensus 101 ~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~-------i~~~~~~~~k~ 173 (370)
T PF02994_consen 101 NELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEE-------IEQAIKELEKR 173 (370)
T ss_dssp -----------------H-------------------------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HhhHHHHHHHH
Confidence 33444444455555555443322 22233333333444555555555555555555543 33333334444
Q ss_pred HHhhHHHHhhhhhhccccCCCC
Q 002247 804 LQKKKEEINRTGKGLKKYGGPV 825 (947)
Q Consensus 804 L~kkE~~~~~~ek~lk~~~gr~ 825 (947)
+++-++-+..++.+.+.+|=|+
T Consensus 174 i~~l~~kl~DlEnrsRRnNiRI 195 (370)
T PF02994_consen 174 IKKLEDKLDDLENRSRRNNIRI 195 (370)
T ss_dssp HHHHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHHhhccCCceeE
Confidence 4444444555666777777776
No 438
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=21.65 E-value=9.5e+02 Score=29.02 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=47.6
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002247 479 IESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFE 535 (947)
Q Consensus 479 Ss~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe 535 (947)
.+....|+.|++|+-.++.+|.....-+++.--.|-.|+++|..|++++...-..+-
T Consensus 282 ~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 282 TAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 344577889999999999999888777888889999999999999999988766664
No 439
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.64 E-value=5.5e+02 Score=24.05 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhh
Q 002247 723 WNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNS 782 (947)
Q Consensus 723 ~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~s 782 (947)
-...+++-..+|++|+=|++.+++.=+.+...-.+.-.....|..|-+.||.++..-...
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888999999999999988877776666666666677777888888777665443
No 440
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=21.38 E-value=90 Score=32.02 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.9
Q ss_pred EEEeeeeeccccCcccceEEEeeeCCC
Q 002247 16 FKLQFQCNQVPKLKKSAVMISLVPDDV 42 (947)
Q Consensus 16 FklqFhAtQVP~~gwdkL~vSiVp~Dt 42 (947)
|-|+|..+-+. ||++|+|++...|.
T Consensus 63 ~d~~~~~~~~~--gwP~L~l~V~~~D~ 87 (168)
T PF07162_consen 63 FDLHFKSTNPQ--GWPQLVLQVYSLDS 87 (168)
T ss_pred EEEEEEeCCCC--CCceEEEEEEEEcc
Confidence 33477666644 89999999998775
No 441
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.99 E-value=3.6e+02 Score=31.79 Aligned_cols=63 Identities=21% Similarity=0.155 Sum_probs=38.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhh
Q 002247 563 RWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSL 625 (947)
Q Consensus 563 r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~ 625 (947)
|-+--..+++|+.+...+|.++...-...+..+-..+.++.+|+.+...||+.+..+.+++..
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345568899999999999866332333213344556666776666666666665555443
No 442
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.89 E-value=6.6e+02 Score=29.19 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=69.5
Q ss_pred HhhhhhhhhhhhHHHHHhh-hhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002247 453 LEQENQCLTSKLEKIQQQE-SMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQA 531 (947)
Q Consensus 453 LkqEN~dls~KLeq~q~Q~-~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qa 531 (947)
-++++-+++..+..++.++ -..++|-=-++.-+.-+++.-.+|..++++|.++.----.+| -.|..|+..+....
T Consensus 180 ~~~~~~~~~~s~~~~e~~~~~~~~~e~~~s~e~~Q~~E~En~~l~~~~n~~~devrqie~~l----vEI~~Lq~ifsehv 255 (316)
T KOG3894|consen 180 TLSERADDNRSLADSELGQDEEKHYEDPLSKEQVQLLETENQRLLNELNELLDEVRQIEKRL----VEISALQDIFSEHV 255 (316)
T ss_pred HHhhcchhhhcccchhhcCcccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4566677888888888877 445555444444444455555555555555555443333333 45677777777777
Q ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 002247 532 QEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTV 568 (947)
Q Consensus 532 q~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~ 568 (947)
.-=..+++-|-..-.--.+-.-.+-+.+||+-|+++-
T Consensus 256 l~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~ 292 (316)
T KOG3894|consen 256 LQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGG 292 (316)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhccc
Confidence 7777777777664444444445566789998888764
No 443
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.76 E-value=1.3e+03 Score=26.34 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=30.2
Q ss_pred chhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 412 DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 412 ~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
..++..|-.+|.++.+.++..+++++.+...|.+|..++..|+.
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777776677777777777777777766655
No 444
>PRK14127 cell division protein GpsB; Provisional
Probab=20.55 E-value=2e+02 Score=28.41 Aligned_cols=24 Identities=13% Similarity=0.476 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 002247 437 EDLEIYIKQLTEDCQVLEQENQCL 460 (947)
Q Consensus 437 E~Le~kmeQLe~Dye~LkqEN~dl 460 (947)
++...-+++...||+.|..||..|
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~L 49 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEEL 49 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666666666655544
No 445
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=20.54 E-value=4.8e+02 Score=23.98 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=24.2
Q ss_pred CccccccceecchhhhhcccCCcccccccccCC-----CCCeeeeeee
Q 002247 94 SKSGFLGEASIDFADFAAETEPLTLSLPLKFAN-----SGAVLHVTIE 136 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a~kp~tVSLPLk~cn-----sGtvLHVtIQ 136 (947)
++.-++|.+.|+.... .....--+||...+ .| -|||.++
T Consensus 73 ~~~~~~g~v~l~~~~~---~~~~~~w~~L~~~~~~~~~~G-~l~l~~~ 116 (117)
T cd08383 73 DRDIVIGKVALSKLDL---GQGKDEWFPLTPVDPDSEVQG-SVRLRAR 116 (117)
T ss_pred CCeeEEEEEEecCcCC---CCcceeEEECccCCCCCCcCc-eEEEEEE
Confidence 4455677777666544 33445667887654 45 4588775
No 446
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=20.28 E-value=2.3e+02 Score=26.82 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 421 KIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLT 461 (947)
Q Consensus 421 KI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls 461 (947)
||..+..+|+--++.+.++..++..|+.-+-++ ||.+|.
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~--EN~EIv 40 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEA--ENLEIV 40 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 567777788877788888888888888777665 777774
No 447
>PLN02320 seryl-tRNA synthetase
Probab=20.21 E-value=2.3e+02 Score=34.50 Aligned_cols=53 Identities=28% Similarity=0.398 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHhhHhH--HHHhhHHHHHHHHHHHHHHHhhHHHHhhhhh
Q 002247 764 NLQAEVENLKVQQNKLQNSLIE--EKLEKDNLAKQVFQLKDELQKKKEEINRTGK 816 (947)
Q Consensus 764 ~L~~E~e~Lk~q~~~Lk~sls~--~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek 816 (947)
.++.+++.|+++.+.+-..+.. ...+.++|..++..|+.++...|+.+..++.
T Consensus 104 ~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 104 ALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444432 1112234444444444444444444444333
No 448
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.13 E-value=1.4e+03 Score=26.73 Aligned_cols=139 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhh
Q 002247 646 KQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNR 725 (947)
Q Consensus 646 k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~ 725 (947)
.+++||-.-...-+..+...+.+=+..+.+++.=++.+.+.=-.|..
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~--------------------------------- 266 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINN--------------------------------- 266 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHH
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQ 805 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~ 805 (947)
+...|..++..++++....++..+..-.--.++-..|..++.+++..|.+-++--.+++.. +=.=+.++-|.+|+.|+.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTKLKQEIK 345 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHhhhhhhc
Q 002247 806 KKKEEINRTGKGL 818 (947)
Q Consensus 806 kkE~~~~~~ek~l 818 (947)
--+=.+..++--|
T Consensus 346 qMdvrIGVleh~L 358 (359)
T PF10498_consen 346 QMDVRIGVLEHTL 358 (359)
T ss_pred Hhhhhhheehhhc
No 449
>PLN02939 transferase, transferring glycosyl groups
Probab=20.07 E-value=2.2e+03 Score=28.81 Aligned_cols=112 Identities=23% Similarity=0.311 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH-------hhhhhhhH
Q 002247 498 KIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKT-------RWKNTVTA 570 (947)
Q Consensus 498 eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~-------r~~na~~~ 570 (947)
+|.-...++---..+|.+|++++... .|.+...-.++.+.--|...-.+.|-|.+.|.+-.-|. -|. -|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 302 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAELIEV-AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWE---KV 302 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHH---HH
Confidence 33333444444444555555554432 34555666666666677777777777777776544332 233 37
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 002247 571 ERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKAND 621 (947)
Q Consensus 571 e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~ne 621 (947)
|+||.=+...+.|+.. ++. -+..-..||.+.-.||+.|..||-
T Consensus 303 ~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 345 (977)
T PLN02939 303 ENLQDLLDRATNQVEK-------AAL-VLDQNQDLRDKVDKLEASLKEANV 345 (977)
T ss_pred HHHHHHHHHHHHHHHH-------HHH-HhccchHHHHHHHHHHHHHHHhhH
Confidence 8888777777666532 221 255667889999999999998864
Done!