Query 002247
Match_columns 947
No_of_seqs 73 out of 75
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 18:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.3 1E-06 3.5E-11 109.2 9.0 45 411-455 855-899 (1184)
2 1c1g_A Tropomyosin; contractIl 98.2 0.0057 2E-07 60.1 39.1 40 416-455 2-41 (284)
3 1c1g_A Tropomyosin; contractIl 98.1 0.01 3.5E-07 58.4 35.8 18 438-455 3-20 (284)
4 1i84_S Smooth muscle myosin he 98.0 2.9E-05 9.8E-10 96.5 14.5 22 258-279 382-403 (1184)
5 3na7_A HP0958; flagellar bioge 96.5 0.27 9.2E-06 51.4 20.8 124 413-543 32-157 (256)
6 2dfs_A Myosin-5A; myosin-V, in 96.0 0.33 1.1E-05 60.5 21.8 92 674-784 956-1047(1080)
7 3vkg_A Dynein heavy chain, cyt 95.9 0.89 3E-05 62.4 26.0 198 481-697 1897-2103(3245)
8 2v71_A Nuclear distribution pr 95.2 0.15 5.3E-06 52.1 12.1 92 724-815 87-181 (189)
9 3na7_A HP0958; flagellar bioge 94.3 5.6 0.00019 41.5 21.5 87 550-642 74-160 (256)
10 2dfs_A Myosin-5A; myosin-V, in 94.0 0.54 1.8E-05 58.6 15.4 102 433-537 920-1031(1080)
11 2v71_A Nuclear distribution pr 93.3 6.7 0.00023 40.2 19.2 131 428-572 11-145 (189)
12 2fxo_A Myosin heavy chain, car 91.3 5.3 0.00018 38.0 14.8 52 404-455 4-55 (129)
13 3oja_B Anopheles plasmodium-re 91.2 2.1 7.2E-05 48.6 14.0 74 728-801 505-578 (597)
14 3o0z_A RHO-associated protein 90.4 16 0.00055 36.8 19.0 110 438-555 52-161 (168)
15 3oja_B Anopheles plasmodium-re 88.6 0.88 3E-05 51.6 8.2 9 638-646 483-491 (597)
16 3o0z_A RHO-associated protein 87.1 27 0.00093 35.2 18.0 130 610-773 9-138 (168)
17 2eqb_B RAB guanine nucleotide 86.1 9.8 0.00034 35.4 12.0 88 721-808 8-96 (97)
18 3vkg_A Dynein heavy chain, cyt 85.0 48 0.0017 46.2 22.7 42 618-663 1931-1972(3245)
19 2ocy_A RAB guanine nucleotide 83.5 38 0.0013 33.7 16.8 122 492-628 15-136 (154)
20 3ol1_A Vimentin; structural ge 83.4 30 0.001 32.6 15.2 93 422-542 22-114 (119)
21 3tnu_A Keratin, type I cytoske 82.9 4.3 0.00015 38.7 8.7 83 732-814 17-103 (131)
22 3i00_A HIP-I, huntingtin-inter 82.1 5.2 0.00018 38.2 8.8 77 483-567 40-116 (120)
23 2ocy_A RAB guanine nucleotide 82.1 38 0.0013 33.7 15.2 92 727-818 46-138 (154)
24 3hnw_A Uncharacterized protein 81.8 5.3 0.00018 38.8 8.9 66 739-804 68-133 (138)
25 3tnu_B Keratin, type II cytosk 81.8 27 0.00092 33.1 13.6 83 413-520 36-119 (129)
26 3tnu_B Keratin, type II cytosk 81.3 4.2 0.00014 38.6 7.9 81 734-814 17-101 (129)
27 2fxo_A Myosin heavy chain, car 80.9 27 0.00093 33.1 13.3 110 265-375 17-127 (129)
28 3tnu_A Keratin, type I cytoske 80.0 25 0.00087 33.4 12.8 83 413-520 38-121 (131)
29 1l8d_A DNA double-strand break 77.8 18 0.00062 32.8 10.7 95 416-528 6-102 (112)
30 1f5n_A Interferon-induced guan 77.5 1.2E+02 0.0041 35.7 23.2 128 553-693 455-582 (592)
31 3swk_A Vimentin; cytoskeleton, 77.1 20 0.00069 32.2 10.5 79 415-528 2-80 (86)
32 3hnw_A Uncharacterized protein 76.2 12 0.00042 36.3 9.5 71 741-811 63-133 (138)
33 1ugk_A Synaptotagmin IV, KIAA1 76.2 12 0.0004 34.3 9.1 101 19-126 28-135 (138)
34 3pyc_A E3 ubiquitin-protein li 74.1 12 0.0004 34.1 8.4 52 85-136 68-130 (132)
35 3ol1_A Vimentin; structural ge 74.0 7.9 0.00027 36.5 7.4 45 726-777 63-107 (119)
36 1wfj_A Putative elicitor-respo 74.0 3.4 0.00011 37.7 4.8 112 16-140 12-131 (136)
37 3i00_A HIP-I, huntingtin-inter 73.9 7.2 0.00025 37.3 7.1 53 754-809 9-61 (120)
38 3b7y_A E3 ubiquitin-protein li 73.0 12 0.0004 34.8 8.3 115 14-137 20-151 (153)
39 3u1c_A Tropomyosin alpha-1 cha 71.7 61 0.0021 29.7 12.5 41 415-455 4-44 (101)
40 3bas_A Myosin heavy chain, str 71.6 20 0.00068 32.2 9.1 52 404-455 5-56 (89)
41 2e7s_A RAB guanine nucleotide 71.1 9.2 0.00032 37.4 7.2 95 726-820 33-128 (135)
42 1rlw_A Phospholipase A2, CALB 69.4 13 0.00045 33.1 7.6 106 19-136 9-122 (126)
43 3jzy_A Intersectin 2; C2 domai 68.6 10 0.00035 42.0 8.0 51 84-135 449-504 (510)
44 2d8k_A Synaptotagmin VII; exoc 67.9 6.2 0.00021 36.3 5.1 104 19-129 32-140 (141)
45 3fbk_A RGS3, RGP3, regulator o 67.6 14 0.00048 34.6 7.6 110 19-136 33-149 (153)
46 1l8d_A DNA double-strand break 66.4 54 0.0018 29.7 11.0 86 712-797 4-101 (112)
47 3ghg_A Fibrinogen alpha chain; 65.7 51 0.0018 38.5 12.8 52 481-543 107-159 (562)
48 2ep6_A MCTP2 protein; beta san 63.2 20 0.00069 32.5 7.6 104 19-138 19-131 (133)
49 2b3r_A Phosphatidylinositol-4- 62.9 9 0.00031 35.3 5.2 102 19-128 26-134 (134)
50 3oja_A Leucine-rich immune mol 62.5 1.1E+02 0.0037 34.0 14.7 25 673-697 437-461 (487)
51 3pdy_A Plectin; cytoskeleton, 62.0 84 0.0029 31.2 12.4 148 367-535 13-162 (210)
52 3u1c_A Tropomyosin alpha-1 cha 60.8 1E+02 0.0035 28.2 13.3 17 439-455 7-23 (101)
53 3csx_A Putative uncharacterize 60.2 14 0.00048 33.3 5.6 67 244-310 12-78 (81)
54 2jee_A YIIU; FTSZ, septum, coi 58.8 43 0.0015 30.3 8.5 49 765-813 25-73 (81)
55 3r6n_A Desmoplakin; spectrin r 57.8 2.5E+02 0.0086 31.9 20.5 188 368-585 11-216 (450)
56 3mov_A Lamin-B1; LMNB1, B-type 56.9 22 0.00076 32.6 6.5 59 478-536 7-69 (95)
57 3u59_A Tropomyosin beta chain; 55.9 1.2E+02 0.0041 27.6 12.4 38 416-453 5-42 (101)
58 1v27_A Regulating synaptic mem 55.9 55 0.0019 29.5 9.1 103 19-129 27-138 (141)
59 3m7f_B E3 ubiquitin-protein li 55.7 25 0.00086 33.6 7.1 58 83-140 74-142 (176)
60 2dmh_A Myoferlin; beta-sandwic 55.7 40 0.0014 30.6 8.2 59 82-140 69-134 (140)
61 2jee_A YIIU; FTSZ, septum, coi 54.8 55 0.0019 29.5 8.5 64 720-783 8-71 (81)
62 1deq_A Fibrinogen (alpha chain 54.4 68 0.0023 36.1 11.0 87 350-451 72-158 (390)
63 3a7p_A Autophagy protein 16; c 54.0 83 0.0028 31.3 10.4 67 733-799 69-135 (152)
64 2chd_A Rabphilin-3A, exophilin 52.5 28 0.00096 31.8 6.6 100 19-124 35-140 (142)
65 1ci6_A Transcription factor AT 52.4 25 0.00086 29.8 5.7 37 419-455 22-58 (63)
66 1ic2_A Tropomyosin alpha chain 52.1 1.1E+02 0.0037 26.9 9.9 49 773-821 26-74 (81)
67 2v4h_A NF-kappa-B essential mo 51.7 56 0.0019 31.0 8.4 46 414-459 63-108 (110)
68 1rh8_A Piccolo protein; beta-s 51.4 27 0.00092 31.8 6.3 46 81-127 94-141 (142)
69 2w83_C C-JUN-amino-terminal ki 51.4 40 0.0014 30.2 6.9 70 737-806 7-76 (77)
70 3mq7_A Bone marrow stromal ant 50.0 1.8E+02 0.0062 27.9 12.4 98 589-693 7-107 (121)
71 3u59_A Tropomyosin beta chain; 49.4 1.5E+02 0.0052 26.9 12.7 17 439-455 7-23 (101)
72 2eqb_B RAB guanine nucleotide 48.8 1.7E+02 0.0058 27.2 13.8 72 534-619 24-95 (97)
73 2v66_B Nuclear distribution pr 48.6 1.8E+02 0.0062 27.5 13.2 73 723-795 33-108 (111)
74 2e7s_A RAB guanine nucleotide 47.9 51 0.0018 32.2 7.8 55 570-627 69-123 (135)
75 3bas_A Myosin heavy chain, str 47.2 1.4E+02 0.0047 26.8 10.0 72 731-809 13-84 (89)
76 3q8t_A Beclin-1; autophagy, AT 46.5 1.7E+02 0.0059 26.6 11.1 75 726-800 5-86 (96)
77 3mq7_A Bone marrow stromal ant 45.4 1.3E+02 0.0044 28.9 9.8 70 548-631 30-102 (121)
78 1go4_E MAD1 (mitotic arrest de 45.2 64 0.0022 30.1 7.7 78 672-751 13-94 (100)
79 2js5_A Uncharacterized protein 44.8 43 0.0015 29.6 6.1 63 247-309 3-65 (71)
80 2yy0_A C-MYC-binding protein; 43.4 18 0.00062 30.0 3.4 28 428-455 20-47 (53)
81 1m1j_B Fibrinogen beta chain; 43.2 1.8E+02 0.0063 33.4 12.6 47 646-692 135-182 (464)
82 2oto_A M protein; helical coil 42.9 2.2E+02 0.0074 27.6 11.5 130 721-850 25-155 (155)
83 1go4_E MAD1 (mitotic arrest de 42.8 28 0.00095 32.5 4.8 34 413-446 12-45 (100)
84 1dqv_A Synaptotagmin III; beta 42.0 95 0.0033 32.1 9.4 98 19-124 26-130 (296)
85 1gmi_A Protein kinase C, epsil 41.8 23 0.00079 32.4 4.3 55 83-140 77-134 (136)
86 3l4q_C Phosphatidylinositol 3- 41.3 1.4E+02 0.005 30.0 10.1 121 559-699 22-152 (170)
87 3kwu_A MUNC13-1; calcium bindi 40.3 58 0.002 29.9 6.7 39 94-136 101-144 (148)
88 1a25_A CALB, protein kinase C 40.2 40 0.0014 31.2 5.7 102 20-131 38-146 (149)
89 3ghg_A Fibrinogen alpha chain; 40.2 2E+02 0.0069 33.7 12.2 108 672-809 51-159 (562)
90 2z0u_A WW domain-containing pr 39.8 24 0.00082 33.7 4.1 85 20-111 50-142 (155)
91 2nq3_A Itchy homolog E3 ubiqui 39.8 28 0.00096 33.9 4.7 108 19-140 42-162 (173)
92 3trt_A Vimentin; cytoskeleton, 39.7 1.5E+02 0.0052 25.3 8.8 15 442-456 10-24 (77)
93 1wfm_A Synaptotagmin XIII; C2 39.1 52 0.0018 30.2 6.2 47 78-125 85-133 (138)
94 1gk4_A Vimentin; intermediate 39.0 2E+02 0.007 25.3 11.5 70 428-521 2-71 (84)
95 2enp_A B/K protein; C2 type 1, 38.9 1E+02 0.0034 28.3 8.1 46 79-125 95-142 (147)
96 2lw1_A ABC transporter ATP-bin 38.0 90 0.0031 27.7 7.3 55 480-535 26-80 (89)
97 3s4r_A Vimentin; alpha-helix, 37.9 2.3E+02 0.0079 25.6 11.2 59 633-693 10-71 (93)
98 2fk9_A Protein kinase C, ETA t 37.9 23 0.00078 34.5 3.7 51 84-137 100-155 (157)
99 3oja_A Leucine-rich immune mol 37.7 4.5E+02 0.016 29.0 14.9 12 438-449 371-382 (487)
100 1jnm_A Proto-oncogene C-JUN; B 37.7 39 0.0013 28.3 4.6 36 420-455 22-57 (62)
101 2pms_C Pneumococcal surface pr 37.5 1.8E+02 0.006 28.2 9.5 75 728-813 9-86 (125)
102 3lay_A Zinc resistance-associa 36.8 64 0.0022 32.5 6.8 62 621-693 74-135 (175)
103 3rdl_A Protein kinase C alpha 36.5 47 0.0016 29.8 5.4 105 19-133 22-133 (137)
104 3swk_A Vimentin; cytoskeleton, 36.5 98 0.0034 27.7 7.3 80 675-773 4-83 (86)
105 1ic2_A Tropomyosin alpha chain 36.5 1.6E+02 0.0056 25.7 8.6 17 439-455 4-20 (81)
106 1t2k_D Cyclic-AMP-dependent tr 36.2 65 0.0022 26.8 5.7 35 421-455 23-57 (61)
107 1a93_B MAX protein, coiled coi 36.1 37 0.0013 26.2 3.7 31 417-447 4-34 (34)
108 2wt7_A Proto-oncogene protein 36.0 65 0.0022 27.1 5.7 36 420-455 23-58 (63)
109 3kbt_A Beta-I spectrin, spectr 34.6 3.9E+02 0.013 27.3 23.0 145 366-528 11-160 (326)
110 1gk4_A Vimentin; intermediate 34.5 2.4E+02 0.0082 24.9 9.8 52 485-536 3-58 (84)
111 3oa7_A Head morphogenesis prot 34.4 83 0.0028 32.6 7.2 68 740-807 10-77 (206)
112 2bwq_A Regulating synaptic mem 34.4 1.2E+02 0.0042 26.9 7.7 87 19-111 24-119 (129)
113 3m9b_A Proteasome-associated A 33.4 55 0.0019 34.9 5.9 65 248-312 25-98 (251)
114 3nmd_A CGMP dependent protein 32.4 87 0.003 27.7 6.0 43 609-655 21-63 (72)
115 2dmg_A KIAA1228 protein; beta- 31.9 1.5E+02 0.0053 26.8 8.1 99 19-125 30-136 (142)
116 3f04_A Synaptotagmin-1; C2A, c 31.4 61 0.0021 29.6 5.3 43 80-123 97-141 (143)
117 3mov_A Lamin-B1; LMNB1, B-type 31.2 2.2E+02 0.0074 26.0 8.8 69 428-521 13-82 (95)
118 2r83_A Synaptotagmin-1; C2A-C2 31.1 1.6E+02 0.0054 29.8 8.9 58 79-138 81-146 (284)
119 1x8y_A Lamin A/C; structural p 31.1 2.8E+02 0.0097 24.6 9.5 40 483-522 35-74 (86)
120 3q8t_A Beclin-1; autophagy, AT 30.7 3.1E+02 0.011 24.9 11.4 41 484-524 40-80 (96)
121 4gkw_A Spindle assembly abnorm 30.5 4E+02 0.014 26.2 18.0 89 600-692 60-154 (167)
122 1ez3_A Syntaxin-1A; three heli 30.4 3.1E+02 0.011 24.9 13.9 66 482-547 11-79 (127)
123 2i1j_A Moesin; FERM, coiled-co 30.0 56 0.0019 38.2 5.8 93 532-628 366-461 (575)
124 2lf0_A Uncharacterized protein 30.0 18 0.00063 34.7 1.5 35 666-700 31-66 (123)
125 3fdw_A Synaptotagmin-like prot 29.3 1.3E+02 0.0045 27.6 7.2 46 78-124 87-134 (148)
126 3nmd_A CGMP dependent protein 28.8 59 0.002 28.8 4.4 29 713-741 21-49 (72)
127 2no2_A HIP-I, huntingtin-inter 28.7 3.2E+02 0.011 25.4 9.6 98 347-466 10-107 (107)
128 3trt_A Vimentin; cytoskeleton, 28.4 2.8E+02 0.0094 23.6 10.0 37 610-649 16-52 (77)
129 3s9g_A Protein hexim1; cyclin 27.4 1.6E+02 0.0056 27.5 7.2 55 726-780 31-85 (104)
130 3ter_A Mammalian stromal inter 27.4 3.1E+02 0.011 26.9 9.5 64 858-921 57-124 (136)
131 3jsv_C NF-kappa-B essential mo 27.4 2E+02 0.0067 26.7 7.7 13 679-691 24-36 (94)
132 4dzn_A Coiled-coil peptide CC- 27.3 60 0.002 24.3 3.5 25 673-697 4-28 (33)
133 2v66_B Nuclear distribution pr 27.1 4.1E+02 0.014 25.2 13.6 85 484-572 4-92 (111)
134 3qne_A Seryl-tRNA synthetase, 26.8 1.3E+02 0.0044 34.8 7.9 63 760-822 40-105 (485)
135 1ses_A Seryl-tRNA synthetase; 26.4 86 0.003 35.2 6.4 61 761-821 36-97 (421)
136 1deq_A Fibrinogen (alpha chain 25.8 1.8E+02 0.0062 32.8 8.6 30 724-753 112-141 (390)
137 1hjb_A Ccaat/enhancer binding 25.3 1.1E+02 0.0039 27.7 5.7 31 425-455 41-71 (87)
138 4h22_A Leucine-rich repeat fli 25.2 2.7E+02 0.0091 26.2 8.2 61 469-529 16-76 (103)
139 4dzn_A Coiled-coil peptide CC- 24.9 96 0.0033 23.2 4.2 23 727-749 4-26 (33)
140 2cm5_A Rabphilin-3A; protein t 24.6 1.4E+02 0.0048 28.0 6.6 104 19-131 43-152 (166)
141 1m1j_A Fibrinogen alpha subuni 24.5 3.5E+02 0.012 31.3 10.6 89 349-452 69-157 (491)
142 1rsy_A Synaptotagmin I; calciu 24.1 1E+02 0.0034 28.6 5.4 44 80-124 105-150 (152)
143 1gd2_E Transcription factor PA 23.8 76 0.0026 27.7 4.1 38 413-450 29-66 (70)
144 2yy0_A C-MYC-binding protein; 23.7 1.1E+02 0.0038 25.3 4.9 32 246-277 18-49 (53)
145 1wle_A Seryl-tRNA synthetase; 23.4 1.6E+02 0.0055 34.0 8.0 32 790-821 118-149 (501)
146 3s9g_A Protein hexim1; cyclin 23.4 1.8E+02 0.0063 27.2 6.7 39 660-698 54-92 (104)
147 2dq0_A Seryl-tRNA synthetase; 23.4 1.3E+02 0.0044 34.2 7.1 61 761-821 39-102 (455)
148 3aco_A Pacsin2, protein kinase 21.7 7.3E+02 0.025 26.3 19.8 31 414-444 82-112 (350)
149 3jsv_C NF-kappa-B essential mo 21.3 2E+02 0.0068 26.6 6.5 29 433-461 60-88 (94)
150 3vmx_A Voltage-gated hydrogen 21.2 1.6E+02 0.0056 24.3 5.2 37 429-465 6-42 (48)
151 1gu4_A CAAT/enhancer binding p 20.7 1.6E+02 0.0054 26.2 5.6 26 429-454 45-70 (78)
152 2w83_C C-JUN-amino-terminal ki 20.5 2.2E+02 0.0076 25.5 6.4 45 435-500 31-75 (77)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.28 E-value=1e-06 Score=109.23 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=31.4
Q ss_pred CchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 411 KDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 411 ~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
.+.++..|++++.++...++.....+.+++.++..|....+.+..
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777776666777777777777666666654
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.21 E-value=0.0057 Score=60.15 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 416 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 416 ~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
..++.||.-+..+++.+....+.|..++..+...+..+..
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 41 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLED 41 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777766666544
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.09 E-value=0.01 Score=58.38 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 002247 438 DLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 438 ~Le~kmeQLe~Dye~Lkq 455 (947)
.|+.+|..|..+++.+..
T Consensus 3 ~~~~~~~~l~~~~~~~~~ 20 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALD 20 (284)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 455556666555555544
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.03 E-value=2.9e-05 Score=96.48 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=16.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 002247 258 VMMRQVELSELELLSLRKQVAK 279 (947)
Q Consensus 258 ~L~R~ad~s~lELQtLRKQi~k 279 (947)
.+..-+.+++.+...|.+-|..
T Consensus 382 ~~~~~a~lLg~~~~~l~~~l~~ 403 (1184)
T 1i84_S 382 AAQKVCHLMGINVTDFTRSILT 403 (1184)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHhcC
Confidence 4566677888888888887764
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.45 E-value=0.27 Score=51.43 Aligned_cols=124 Identities=14% Similarity=0.148 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhh--hhhhhhchhhhHhHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQE--SMKSRECIESLATIKELES 490 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~--~k~q~EcSs~~~~I~eLe~ 490 (947)
.++..|+..+..+...++..+.+.++++.++..++.+...+.. +++..+.+. .+-..|..+...-|..++.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~-------ri~~~~~~l~~v~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA-------KIASIQKKMSEIKSERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4667777777777777777788888888888888888888877 676666554 4455677777777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 002247 491 QSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTH 543 (947)
Q Consensus 491 q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~ 543 (947)
.+..+|.++.+...+.-.--..+..++..+..+..++...-..+.+.+..+..
T Consensus 105 ~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~ 157 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKE 157 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666666666666666666666666666666555543
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.03 E-value=0.33 Score=60.46 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 674 EALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 674 ~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
..+..|+..|+.+++.|...... ...++..+..-..+.++|.+++..+.+|-..+.+.+..++
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e----------------~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~- 1018 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEE----------------AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK- 1018 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45667788887777777762111 1123334444444444445555444444444444444333
Q ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHhhHh
Q 002247 754 LKGENEMLIGNLQAEVENLKVQQNKLQNSLI 784 (947)
Q Consensus 754 ~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls 784 (947)
++++..+..|..|...|+.|.++|...+.
T Consensus 1019 --~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1019 --HETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666664444
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.86 E-value=0.89 Score=62.35 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=109.9
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHH
Q 002247 481 SLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELR 560 (947)
Q Consensus 481 ~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLr 560 (947)
++..|+-...=...-..++..+..++..-|.-+.+...+|..|.++|..+...++. +...|+++|.
T Consensus 1897 yLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~--------------k~~ea~~~l~ 1962 (3245)
T 3vkg_A 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDV--------------KNEQANQKLK 1962 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 34456655666666678888888888888888888888888888887766544432 2222333333
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHH---HHHHhhHHHHHHHHHHhHHHHhhhhhh---hh
Q 002247 561 KTRWKNTVTAERLQDEFRRLSVDMASKFDENE---KLAMKAMTEA---NEQRMQKAHLEEMLQKANDELSLIKDQ---NG 631 (947)
Q Consensus 561 k~r~~na~~~e~LQ~e~~~LS~qm~s~~~enE---k~~~~A~~Ea---~eLR~qk~~LEe~Lqk~neeL~~~~~~---~e 631 (947)
++--... .|+.-+.++.....++...-.+=. ..+.+-+++| .=+|...+.+|+.|.+++++|..+++. -+
T Consensus 1963 ~i~~~~~-~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le 2041 (3245)
T 3vkg_A 1963 QMVQDQQ-AAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALE 2041 (3245)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322211 122222222222222111111000 1111112221 346777777777777777777665543 34
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhh
Q 002247 632 VKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNL 697 (947)
Q Consensus 632 ~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L 697 (947)
.+|..|..+.+..+...+++-.+++.-...++ ..+.....|+.|=.+=...+..+.....+|
T Consensus 2042 ~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~----rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2042 KSIATYKEEYATLIRETEQIKTESSKVKNKVD----RSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 56677777777777777777777776666666 444556667666666666665555544443
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.20 E-value=0.15 Score=52.07 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHh---hHhHHHHhhHHHHHHHHHH
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQN---SLIEEKLEKDNLAKQVFQL 800 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~---sls~~~~EkE~l~kqv~qL 800 (947)
...+..|..+|+.|++....++.-|-.+--.+|+.|...|...+=++-+..-++..-- .|-.+.-||+.|+..|.+|
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRL 166 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRL 166 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447788888888888888888888888889999999999999999988888887654 3447777899999999999
Q ss_pred HHHHHhhHHHHhhhh
Q 002247 801 KDELQKKKEEINRTG 815 (947)
Q Consensus 801 k~eL~kkE~~~~~~e 815 (947)
+.++.--..++.+..
T Consensus 167 kdE~rDLk~El~v~~ 181 (189)
T 2v71_A 167 KDEARDLRQELAVRE 181 (189)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHh
Confidence 999987777676654
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.30 E-value=5.6 Score=41.52 Aligned_cols=87 Identities=5% Similarity=0.051 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhh
Q 002247 550 QRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQ 629 (947)
Q Consensus 550 qRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~ 629 (947)
.|+-+.+.-|..++ |.=....|+.|+..+..... .-|.-+..++.....++.....+++.+.....+|...+..
T Consensus 74 ~ri~~~~~~l~~v~--~~kE~~aL~kEie~~~~~i~----~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 74 AKIASIQKKMSEIK--SERELRSLNIEEDIAKERSN----QANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp HHHHHHHHHHHHCS--SSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333 44555666666665554332 3345555666666666666666666666666665555554
Q ss_pred hhccHHHHHHHHH
Q 002247 630 NGVKLQELSDQLE 642 (947)
Q Consensus 630 ~e~kl~eL~~q~d 642 (947)
+...+.++..++.
T Consensus 148 ~~~~~~e~~~e~~ 160 (256)
T 3na7_A 148 VENEVKNIKETQQ 160 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.03 E-value=0.54 Score=58.61 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=27.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHH----------HHHHHHHHHHHHHH
Q 002247 433 KKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKEL----------ESQSERLEDKIKQQ 502 (947)
Q Consensus 433 kke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eL----------e~q~e~LE~eLkeQ 502 (947)
++.+-.|+.++.+|....+.+..+|.++--++.+.+. +++.||+.....+.++ ++.+.+|+.++...
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~---~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI---TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp -------------------------------CHHHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666555555443221 1334444444443333 33333344444444
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002247 503 SEEYSESLISINELECQVKELKRELDKQAQEFEDD 537 (947)
Q Consensus 503 ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~d 537 (947)
..++.......+.||..+..+..+|+.+...++.+
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e 1031 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333333333
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.29 E-value=6.7 Score=40.20 Aligned_cols=131 Identities=12% Similarity=0.231 Sum_probs=71.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 002247 428 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS 507 (947)
Q Consensus 428 Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efS 507 (947)
||.-||..-+....++++|...|.++.....+|=-.||. +-..+-..+.+|.+++.+|..++..-...|-
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~----------eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEA----------QLVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777776644433322222 2223334555666666666666655555554
Q ss_pred hhhh----hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 002247 508 ESLI----SINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAER 572 (947)
Q Consensus 508 e~l~----tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~ 572 (947)
.+.. +|+.|+.++..|... ...+...|..|..+|-..|+.+-.+..+|--...++..+.|+
T Consensus 81 ~~~~e~~~~~~~Lq~el~~l~~~----~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 81 HQYAQSYKQVSVLEDDLSQTRAI----KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4433 366666666655543 234444455555555555555544444555444444444443
No 12
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.28 E-value=5.3 Score=38.03 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=41.7
Q ss_pred HHHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 404 ALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 404 ~Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
+|++....+.++..+.++|..|..-++...+.+.+|+.++..|...+..|..
T Consensus 4 PLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 4 PLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677888888888888877777778889999988888888888765
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.17 E-value=2.1 Score=48.55 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHH
Q 002247 728 DDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLK 801 (947)
Q Consensus 728 ~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk 801 (947)
+.+.+++..++........++...+..-+++...+..++.+++.++.+....+..+.+-..|..++.+++.+|.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444444444555555555555555555555554444444444444444443
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.41 E-value=16 Score=36.83 Aligned_cols=110 Identities=14% Similarity=0.170 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 002247 438 DLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELE 517 (947)
Q Consensus 438 ~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le 517 (947)
+|..++..|......|-++...|-.-|++- +..|+---.+|.+|+++|..|+.+|+....+.+-....-..|.
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~L~qE-------r~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~ 124 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAILEAE-------RRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQ 124 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555455552 2335555678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHH
Q 002247 518 CQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRA 555 (947)
Q Consensus 518 ~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~a 555 (947)
..|..|+++-.....-+-=+|.++. .+-+||.++-++
T Consensus 125 Ekl~~lEKe~a~~eid~~~eLKalQ-~~~eqE~~~H~~ 161 (168)
T 3o0z_A 125 DMLNHSEKEKNNLEIDLNYKLKSLQ-QRLEQEVNEHKV 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999998877666677764 467888777554
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.57 E-value=0.88 Score=51.65 Aligned_cols=9 Identities=0% Similarity=0.232 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 002247 638 SDQLEQKDK 646 (947)
Q Consensus 638 ~~q~d~K~k 646 (947)
..+++.+..
T Consensus 483 ~~~i~~~~~ 491 (597)
T 3oja_B 483 HAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhhh
Confidence 333333333
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.12 E-value=27 Score=35.23 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=72.9
Q ss_pred HHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 002247 610 AHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEK 689 (947)
Q Consensus 610 ~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~ 689 (947)
..||--|..+|+-|+.-.+ ...++---.+++.....+.++...||.++-..|++.+- +|-+|+-.|-+..+.
T Consensus 9 ~~LekQL~E~n~kLk~EsE-~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~-------~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESD-TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKS-------QTDKDYYQLQAILEA 80 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4566667777787877665 45577777778888888888888888777777773331 222333333332211
Q ss_pred HHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHH
Q 002247 690 LRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEV 769 (947)
Q Consensus 690 L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~ 769 (947)
=+. ....+.--+.+|...|.+|..|+..++.-+..+...+...-..|..|--|+
T Consensus 81 Er~--------------------------~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 81 ERR--------------------------DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 011122234555666666666666666666655555555444444444444
Q ss_pred HHHH
Q 002247 770 ENLK 773 (947)
Q Consensus 770 e~Lk 773 (947)
-++.
T Consensus 135 a~~e 138 (168)
T 3o0z_A 135 NNLE 138 (168)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 4444
No 17
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.08 E-value=9.8 Score=35.35 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=72.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHH-HHHhhHhHHHHhhHHHHHHHHH
Q 002247 721 QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQN-KLQNSLIEEKLEKDNLAKQVFQ 799 (947)
Q Consensus 721 ~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~-~Lk~sls~~~~EkE~l~kqv~q 799 (947)
..-..++.+|.++.+....|..++...|..-+..+..-|.....+..|||.|-+..= +--.+++..-.+-.++.+++-+
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~ 87 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKR 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788899999999999999999999999999999999999999999887653 3333445667777799999999
Q ss_pred HHHHHHhhH
Q 002247 800 LKDELQKKK 808 (947)
Q Consensus 800 Lk~eL~kkE 808 (947)
|+..|.-++
T Consensus 88 L~~qL~d~d 96 (97)
T 2eqb_B 88 LTEQLREKD 96 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 998887653
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.02 E-value=48 Score=46.20 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=25.5
Q ss_pred HhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 618 KANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLI 663 (947)
Q Consensus 618 k~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle 663 (947)
.|+++... -..+|.++..++..|.+..+.|+.++...+.+-+
T Consensus 1931 et~~~V~~----l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae 1972 (3245)
T 3vkg_A 1931 DTEAQVKD----LQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAE 1972 (3245)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 3346666777777777777777777755444443
No 19
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.49 E-value=38 Score=33.73 Aligned_cols=122 Identities=19% Similarity=0.328 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 002247 492 SERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAE 571 (947)
Q Consensus 492 ~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e 571 (947)
...|+..|-.-+.+.......|..|+.--..+.+ +..+-......+..|..+-.+...+-..||.. ..
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~-l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~-----------~~ 82 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT-LKRELSDRDDEVKRLREDIAKENELRTKAEEE-----------AD 82 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-----------HH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 3445555555555544444444444432111111 22222234444555544333333333344433 45
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhh
Q 002247 572 RLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKD 628 (947)
Q Consensus 572 ~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~ 628 (947)
++..|+..||. |-|++-=++...|-.+...+-..+.+|++.|..+..-|...++
T Consensus 83 ~ie~ElEeLTa---sLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 83 KLNKEVEDLTA---SLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999996 4688877788888888888888888898988888777766444
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.43 E-value=30 Score=32.56 Aligned_cols=93 Identities=20% Similarity=0.354 Sum_probs=52.7
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHH
Q 002247 422 IRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQ 501 (947)
Q Consensus 422 I~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLke 501 (947)
|.+|-+.|+....++-.|..++.-+....+.++. |.|. |.+ ..+.+|.++..
T Consensus 22 I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~-------KyE~----------E~~-----------~r~~~E~di~~ 73 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE-------KLQE----------EML-----------QREEAENTLQS 73 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH----------HHH-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHH----------HHH-----------HHHHHHHHHHH
Confidence 3344334444444566666666666666666655 3332 111 11233455555
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002247 502 QSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVT 542 (947)
Q Consensus 502 Q~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~ 542 (947)
.++..-+.-.+--.||++|.+|.+||.=--.-++.++..|.
T Consensus 74 lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 74 FRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555455555567888888888888776666666666654
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.90 E-value=4.3 Score=38.68 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=47.1
Q ss_pred HHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHH----hhHHHHHHHHHHHHHHHhh
Q 002247 732 KKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKL----EKDNLAKQVFQLKDELQKK 807 (947)
Q Consensus 732 ~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~----EkE~l~kqv~qLk~eL~kk 807 (947)
.+|..++..|.+.-+.|...+..-.+.-..|..|+.|+++++.++..|-..|.+.+. +...++.+|..|+.+|..-
T Consensus 17 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 17 TKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666677666666777778999999999999999999999986655 3447788888888888776
Q ss_pred HHHHhhh
Q 002247 808 KEEINRT 814 (947)
Q Consensus 808 E~~~~~~ 814 (947)
.+.+..+
T Consensus 97 r~em~~q 103 (131)
T 3tnu_A 97 RCEMEQQ 103 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 22
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.07 E-value=5.2 Score=38.23 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEELRKT 562 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaLrk~ 562 (947)
..|.+|+++|..|+.+|.++...--..+...+.|..++..|. ....+-+.+.+--+|-|.||-.+|+-..|.
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~--------~~~~~~~~~q~~~~e~E~kAqa~Eerf~KL 111 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR--------RQREDTEKAQRSLSEIERKAQANEQRYSKL 111 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------TTCC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999998765565666655555554432 222233334444567788888888877776
Q ss_pred hhhhh
Q 002247 563 RWKNT 567 (947)
Q Consensus 563 r~~na 567 (947)
.-.|+
T Consensus 112 Ke~yt 116 (120)
T 3i00_A 112 KEKYS 116 (120)
T ss_dssp -----
T ss_pred HHHHH
Confidence 65554
No 23
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.06 E-value=38 Score=33.70 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=72.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHH-HHhhHhHHHHhhHHHHHHHHHHHHHHH
Q 002247 727 RDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNK-LQNSLIEEKLEKDNLAKQVFQLKDELQ 805 (947)
Q Consensus 727 r~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~-Lk~sls~~~~EkE~l~kqv~qLk~eL~ 805 (947)
..+|..+.+....|..++...|..-+..+.+-|.....+..|+|.|-+..=+ --.++...-.+-.++..++-+|+..|.
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677888899999999999999999999999999999988776433 333444667777899999999999999
Q ss_pred hhHHHHhhhhhhc
Q 002247 806 KKKEEINRTGKGL 818 (947)
Q Consensus 806 kkE~~~~~~ek~l 818 (947)
-++.-+..+...|
T Consensus 126 e~~~~l~~lq~ql 138 (154)
T 2ocy_A 126 EKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988777765544
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.84 E-value=5.3 Score=38.81 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHH
Q 002247 739 QEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDEL 804 (947)
Q Consensus 739 ~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL 804 (947)
+|..+++.+...+...-++++..+-.|..++.+++.++..++..+.+-..+...|++++.+|+.+|
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444445555555555555555555555555555555555555555555444
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.78 E-value=27 Score=33.07 Aligned_cols=83 Identities=18% Similarity=0.335 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQS 492 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~ 492 (947)
.|+..|+..|..|..||+..+..+..|+..|.+++.-|+.= +.. ....|..|++++
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---------------l~~---------~q~~i~~lE~eL 91 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA---------------LKD---------ARNKLAELEEAL 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------------HHH---------HHHHHHHHHHhH
Confidence 58889999999999999999999999999999888876532 111 234678888999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHH-HHHHHH
Q 002247 493 ERLEDKIKQQSEEYSESLISIN-ELECQV 520 (947)
Q Consensus 493 e~LE~eLkeQ~~efSe~l~tI~-~Le~q~ 520 (947)
..+-.+|..|..+|- .|-.|+ .|+..|
T Consensus 92 ~~~r~e~~~ql~EYq-~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 92 QKAKQDMARLLREYQ-ELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999988886 455553 444444
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.32 E-value=4.2 Score=38.64 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=47.8
Q ss_pred HHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHH----hhHHHHHHHHHHHHHHHhhHH
Q 002247 734 FASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKL----EKDNLAKQVFQLKDELQKKKE 809 (947)
Q Consensus 734 ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~----EkE~l~kqv~qLk~eL~kkE~ 809 (947)
|..++..|.+.-..|...|..-.+.-..|..|+.|+++++.++..|-..|.+.+. +...++.+|..|+.+|..-.+
T Consensus 17 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 17 YEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444544444444444444444567899999999999999999999986654 344778888888888877666
Q ss_pred HHhhh
Q 002247 810 EINRT 814 (947)
Q Consensus 810 ~~~~~ 814 (947)
.+..+
T Consensus 97 e~~~q 101 (129)
T 3tnu_B 97 DMARL 101 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.91 E-value=27 Score=33.13 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhccccHHHHhhhhhhhhh-HHHHHHHHHHHHhhh
Q 002247 265 LSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQNSIDIAEIERRLQSEEH-LKFLQEEIREELNYE 343 (947)
Q Consensus 265 ~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~k~~~~~~~~~lq~e~~-~~~l~eElr~El~yE 343 (947)
..+-++..|+..+.+..+...+|......+..|...|...++.=+.... +......++...-. +-..+.++...+.=+
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~-e~EE~~~~L~~~k~eLe~~l~el~~rleee 95 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLA-DAEERCDQLIKNKIQLEAKVKEMNKRLEDE 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888899999999999999998888877665544332 11222223333333 556677778888888
Q ss_pred hhhhhhhHHHHHHhhhhhHHHHHHHhhHHHHH
Q 002247 344 KEVSAHLRLQLEKTQDSNAELILAVKDLNEML 375 (947)
Q Consensus 344 Ke~NaNL~lQLqKTQESN~ELvlavqDLEemL 375 (947)
.+.|++|.-.-+|++.-..+|---+.|+|.++
T Consensus 96 ee~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 96 EEMNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988888887543
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.99 E-value=25 Score=33.37 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQS 492 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~ 492 (947)
.|+..|+..|..|..||+..+..+..|+..|.+++..|+.=.. +. ...|..|++++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~------------~~------------q~~i~~lE~eL 93 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA------------QI------------QEMIGSVEEQL 93 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH------------HH------------HHHHHHHHHHH
Confidence 5888999999999999999999999999999998887754211 12 34678889999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHH-HHHHHH
Q 002247 493 ERLEDKIKQQSEEYSESLISIN-ELECQV 520 (947)
Q Consensus 493 e~LE~eLkeQ~~efSe~l~tI~-~Le~q~ 520 (947)
..+-.+|..|..+|-+ |-.|+ .|+..|
T Consensus 94 ~~~r~em~~ql~EYq~-Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 94 AQLRCEMEQQNQEYKI-LLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999988864 54553 444444
No 29
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=77.81 E-value=18 Score=32.85 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHH--HHHHH
Q 002247 416 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKEL--ESQSE 493 (947)
Q Consensus 416 ~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eL--e~q~e 493 (947)
..++.++.++..+|...+..+..++.+|.++...+..|.. ....|-.|-..+..- ..-+.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~------------------~g~~CPvCgs~l~~~~~~~~i~ 67 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK------------------AKGKCPVCGRELTDEHREELLS 67 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------------CSEECTTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------CCCCCCCCCCcCCHHHHHHHHH
Confidence 3344444444444444445555556666666655555422 134587775544332 22344
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 002247 494 RLEDKIKQQSEEYSESLISINELECQVKELKRELD 528 (947)
Q Consensus 494 ~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe 528 (947)
..+.++.....++..-...+..++..+..|..++.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555566666666666666655
No 30
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=77.50 E-value=1.2e+02 Score=35.70 Aligned_cols=128 Identities=19% Similarity=0.261 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhhc
Q 002247 553 IRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNGV 632 (947)
Q Consensus 553 i~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e~ 632 (947)
.+|++.|..-.-+.....+.+= |--....+.||.+...-+.+...+.++..|+++..+-.+-+..-+..|+-
T Consensus 455 ~~~~~vl~~fl~~~~~~~~~il--------q~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 526 (592)
T 1f5n_A 455 IQAEEILQTYLKSKESMTDAIL--------QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 526 (592)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHH--------HHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555443333333221 23334456777776666666667788888888776666555555555666
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 002247 633 KLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKE 693 (947)
Q Consensus 633 kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e 693 (947)
++.+|-.....-.+++ ..|.+..- -...+-+++-..+-|..++..|..+|..|+..
T Consensus 527 ~~~ql~~kme~~~~~~---~~e~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 527 HLKQLTEKMENDRVQL---LKEQERTL--ALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666655444332222 33321110 01122334445566888999999999988874
No 31
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.11 E-value=20 Score=32.16 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHH
Q 002247 415 VDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSER 494 (947)
Q Consensus 415 ~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~ 494 (947)
+..|+.+|..+. .++-.|..+++-+..+.+.++. |.|.- +. ..+.
T Consensus 2 i~eLr~qi~~l~-------~e~~~l~~e~dn~~~~~edfk~-------KyE~E-~~--------------------~R~~ 46 (86)
T 3swk_A 2 MRELRRQVDQLT-------NDKARVEVERDNLAEDIMRLRE-------KLQEE-ML--------------------QREE 46 (86)
T ss_dssp CHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HH--------------------HHHH
T ss_pred HHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHH-------HHHHH-HH--------------------HHHH
Confidence 344555555554 3566677777777777777665 44431 11 1123
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 002247 495 LEDKIKQQSEEYSESLISINELECQVKELKRELD 528 (947)
Q Consensus 495 LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe 528 (947)
.|.++...++.--+.--+-..||++|.+|.+||.
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665666666788888888888874
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.25 E-value=12 Score=36.27 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q 002247 741 AAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEI 811 (947)
Q Consensus 741 a~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~ 811 (947)
|...-.||..++...+..+..+..+..|+..||-+...++-.+-+-..+++.|++++..|...+.+.|..+
T Consensus 63 ALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 63 YLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788777776666666666666666555555555555555555555556666666666555555544
No 33
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=76.18 E-value=12 Score=34.26 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=57.6
Q ss_pred eeeeeccccCcc----cceEEEeeeCCCCCccccccccccccCccccCccchh-hheecccCCccccccceeeeeeec--
Q 002247 19 QFQCNQVPKLKK----SAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYV-TVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~gw----dkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyE-tvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
-++|..+|...+ .--||.|.-...|+...|| .|..+++ ||+|. +.-| .+.....+.....+|.|.-
T Consensus 28 v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT---~v~~~t~---nP~wne~f~f-~~v~~~~~~~~~l~i~V~d~d 100 (138)
T 1ugk_A 28 IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKT---RVLRKTL---DPAFDETFTF-YGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp EEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEEC---CCCSSCS---SCEEEEEEEE-ECCCSTTGGGCEEEEEEEEEC
T ss_pred EEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEec---CcCcCCC---CCcEeeEEEE-cCcCHHHhccCEEEEEEEECC
Confidence 457778886433 2234443322224433333 3333332 44443 3233 1122234455667777762
Q ss_pred cCCccccccceecchhhhhcccCCcccccccccCC
Q 002247 92 GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFAN 126 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cn 126 (947)
..++..+||++.|+|+++.........-+||+.-.
T Consensus 101 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135 (138)
T ss_dssp SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred CCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence 34567899999999999988777777888888744
No 34
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=74.14 E-value=12 Score=34.05 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=35.2
Q ss_pred eeeeeec--cCCc---cccccceecchhhhhcccCCcccccccccCCC------CCeeeeeee
Q 002247 85 YHFIVST--GSSK---SGFLGEASIDFADFAAETEPLTLSLPLKFANS------GAVLHVTIE 136 (947)
Q Consensus 85 ykfvVs~--GSSk---SgiLGEasINlAdYa~a~kp~tVSLPLk~cns------GtvLHVtIQ 136 (947)
.+|-|.- ..++ ..+||++.|.+++......+....+||..-+. ..-|||.++
T Consensus 68 l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 68 ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp EEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred EEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 5666652 2233 58999999999998777776667788876421 335677665
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.03 E-value=7.9 Score=36.54 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHH
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQN 777 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~ 777 (947)
.|+.++..|..|++ .++...-.+-++|.-+..|+.|+.-||.-|.
T Consensus 63 ~r~~~E~di~~lrK-------~lD~~~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 63 QREEAENTLQSFRQ-------DVDNASLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 4445455555666666666666666665543
No 36
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=73.99 E-value=3.4 Score=37.66 Aligned_cols=112 Identities=12% Similarity=0.076 Sum_probs=63.1
Q ss_pred EEE-eeeeeccccCccc---ceEEEeeeCCCCCcccccccccc-ccCccccCccchhhheecccCCccccccceeeeeee
Q 002247 16 FKL-QFQCNQVPKLKKS---AVMISLVPDDVGKPTFKLEKVPV-QNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVS 90 (947)
Q Consensus 16 Fkl-qFhAtQVP~~gwd---kL~vSiVp~DtGK~TaKs~KA~V-rnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs 90 (947)
..+ -..|..+|...+. --||.|- .|....|| ++.- .+-+..|...+.=.+. . .....+|.|.
T Consensus 12 L~v~v~~a~~L~~~d~~g~~dpyv~v~---~~~~~~kT-~~~~~~~~nP~Wne~f~f~v~----~-----~~~~l~~~V~ 78 (136)
T 1wfj_A 12 LEVVLVSAKGLEDADFLNNMDPYVQLT---CRTQDQKS-NVAEGMGTTPEWNETFIFTVS----E-----GTTELKAKIF 78 (136)
T ss_dssp EEEEEEEEEECSSCCSSCSSCCCEEEE---SSSCEEEC-CCCTTCCSSCEEEEEEEEEEE----S-----SCCEEEEEEC
T ss_pred EEEEEEeccCCCCcccCCCcCceEEEE---ECCcccee-EeccCCCCCCccCcEEEEEEC----C-----CCCEEEEEEE
Confidence 344 5678888875432 2233332 23334444 3332 3456677654433222 1 3445667665
Q ss_pred c--cCCccccccceecchhhhhcccCCccccccccc-CCCCCeeeeeeeeccC
Q 002247 91 T--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKF-ANSGAVLHVTIEKMDG 140 (947)
Q Consensus 91 ~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~-cnsGtvLHVtIQ~L~~ 140 (947)
- ..++..+||++.|+|.++.....+....+||.. .....-|||.|+....
T Consensus 79 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 79 DKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred ECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence 2 345688999999999999665555556677751 1223456788776543
No 37
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=73.92 E-value=7.2 Score=37.27 Aligned_cols=53 Identities=26% Similarity=0.322 Sum_probs=44.3
Q ss_pred ccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHH
Q 002247 754 LKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKE 809 (947)
Q Consensus 754 ~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~ 809 (947)
.+|+++..|..|+.||+.|+.....+ ..+.......|+.+|.+|+++|.-...
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999887777 457777788899999999999976543
No 38
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=72.96 E-value=12 Score=34.80 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=60.8
Q ss_pred EEEEE-eeeeeccccCccc---ceEEEeeeCCCC--CccccccccccccCccccCccchhhheecccCCccccccceeee
Q 002247 14 AVFKL-QFQCNQVPKLKKS---AVMISLVPDDVG--KPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHF 87 (947)
Q Consensus 14 ~vFkl-qFhAtQVP~~gwd---kL~vSiVp~DtG--K~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykf 87 (947)
..+++ -+.|..+|...+. --||.|--...+ +...+.+++.-++-+..|...+.=.+. + .+...+|
T Consensus 20 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~----~-----~~~~l~~ 90 (153)
T 3b7y_A 20 RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH----P-----QQHRLLF 90 (153)
T ss_dssp EEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEEC----T-----TTCEEEE
T ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEec----C-----CCCEEEE
Confidence 34444 6788888864322 234443322222 122333344444556667654322221 1 2345567
Q ss_pred eeec--cCCccccccceecchhhhhcccCC----c-ccccccccC----CCCCeeeeeeee
Q 002247 88 IVST--GSSKSGFLGEASIDFADFAAETEP----L-TLSLPLKFA----NSGAVLHVTIEK 137 (947)
Q Consensus 88 vVs~--GSSkSgiLGEasINlAdYa~a~kp----~-tVSLPLk~c----nsGtvLHVtIQ~ 137 (947)
.|.- ..++..+||++.|+|.++...... . ...+||... ....-|||.++.
T Consensus 91 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~ 151 (153)
T 3b7y_A 91 EVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 151 (153)
T ss_dssp EEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEE
T ss_pred EEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEE
Confidence 6652 345788999999999999876542 1 356777543 233566787765
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.72 E-value=61 Score=29.70 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 415 VDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 415 ~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
...++.||.-|-.+.+.+....+.++.++.+++..+..+-+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~ 44 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLED 44 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45677788777777676666667777766666666655544
No 40
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=71.60 E-value=20 Score=32.22 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHHhhcCCchhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 404 ALAKERNKDKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 404 ~Lvk~~~~~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
+|++....+.++..+.+++..+-..++-..+.+.+|+.++.+|...+..|..
T Consensus 5 PLL~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ 56 (89)
T 3bas_A 5 PLLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFG 56 (89)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555677888888888888877777778899999999999888888865
No 41
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.06 E-value=9.2 Score=37.38 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHH-HHhhHhHHHHhhHHHHHHHHHHHHHH
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNK-LQNSLIEEKLEKDNLAKQVFQLKDEL 804 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~-Lk~sls~~~~EkE~l~kqv~qLk~eL 804 (947)
+.++|.+.++....|...+...|..-+..+..-|.....+..|+|.|-+..=+ --.+++.+-.+-.++..++-+|+..|
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 112 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQL 112 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888999999999999999999999999999999988876433 33344466677779999999999999
Q ss_pred HhhHHHHhhhhhhccc
Q 002247 805 QKKKEEINRTGKGLKK 820 (947)
Q Consensus 805 ~kkE~~~~~~ek~lk~ 820 (947)
.-++.-+..+...|.+
T Consensus 113 ~e~e~ll~~lq~QL~~ 128 (135)
T 2e7s_A 113 REKDMLLDTLTLQLKN 128 (135)
T ss_dssp THHHHCC---------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998877776655543
No 42
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=69.44 E-value=13 Score=33.11 Aligned_cols=106 Identities=16% Similarity=0.248 Sum_probs=60.5
Q ss_pred eeeeeccccC------cccceEEEeeeCCCCCccccccccccccCccccCccch-hhheecccCCccccccceeeeeee-
Q 002247 19 QFQCNQVPKL------KKSAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIY-VTVKLIREPKTGYIKEKIYHFIVS- 90 (947)
Q Consensus 19 qFhAtQVP~~------gwdkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIy-Etvkl~qD~~s~~~~e~iykfvVs- 90 (947)
-..|..+|.. |..--||.|--...++...|| .|..++ .+|+| |+..|.-... .....+|.|.
T Consensus 9 v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT---~v~~~t---~nP~wne~f~f~v~~~----~~~~l~i~V~d 78 (126)
T 1rlw_A 9 VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRT---RHFNND---INPVWNETFEFILDPN----QENVLEITLMD 78 (126)
T ss_dssp EEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEEC---CCCTTC---SSCEEEEEEEEEECTT----SCCEEEEEEEE
T ss_pred EEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEc---cccCCC---CCCcccceEEEEecCC----CCCEEEEEEEE
Confidence 4678888863 333446655544333434433 232222 24554 3444432111 1345566665
Q ss_pred ccCCccccccceecchhhhhcccCCcccccccccCCCCCeeeeeee
Q 002247 91 TGSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHVTIE 136 (947)
Q Consensus 91 ~GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHVtIQ 136 (947)
-+..+..+||++.|+|.++.. ..+....+||.....| .+||+++
T Consensus 79 ~d~~~~~~iG~~~i~l~~l~~-~~~~~~~~~L~~~~~g-~i~~~le 122 (126)
T 1rlw_A 79 ANYVMDETLGTATFTVSSMKV-GEKKEVPFIFNQVTEM-VLEMSLE 122 (126)
T ss_dssp CCSSCCEEEEEEEEEGGGSCT-TCEEEEEEEETTTEEE-EEEEEEE
T ss_pred CCCCCCceeEEEEEEHHHccC-CCcEEEEEEcCCCceE-EEEEEEE
Confidence 344457899999999999864 5566788999875333 5677665
No 43
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=68.59 E-value=10 Score=42.03 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=36.5
Q ss_pred eeeeeeec--cCCccccccceecchhhhhcc---cCCcccccccccCCCCCeeeeee
Q 002247 84 IYHFIVST--GSSKSGFLGEASIDFADFAAE---TEPLTLSLPLKFANSGAVLHVTI 135 (947)
Q Consensus 84 iykfvVs~--GSSkSgiLGEasINlAdYa~a---~kp~tVSLPLk~cnsGtvLHVtI 135 (947)
...|-|.- ..++..+||.++|++++.... ..|...-+||.+..+|.| ||.+
T Consensus 449 ~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i-~l~~ 504 (510)
T 3jzy_A 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEV-WVRF 504 (510)
T ss_dssp EEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEE-EEEE
T ss_pred EEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceE-EEEE
Confidence 45666652 345678999999999998753 335677789999888864 5544
No 44
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.87 E-value=6.2 Score=36.29 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=56.4
Q ss_pred eeeeeccccCccc---ceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--cC
Q 002247 19 QFQCNQVPKLKKS---AVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--GS 93 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--GS 93 (947)
-+.|..+|...+. --||.|.-..-++...|| ++.-.+-+..|... ..|.- .....+......|-|.- ..
T Consensus 32 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT-~v~~~t~nP~wne~----f~f~~-~~~~~~~~~~l~i~V~d~d~~ 105 (141)
T 2d8k_A 32 IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLET-KVKRKNLNPHWNET----FLFEG-FPYEKVVQRILYLQVLDYDRF 105 (141)
T ss_dssp EEEEESCCCCSSSSCCCEEEEEEEESCCSSEEEC-CCCTTCSSCCCCEE----EEECS-CCHHHHTTSEEEEEEEECCSS
T ss_pred EEEeECCCCCCCCCCCCcEEEEEEECCCCccEeC-ceEcCCCCCccccE----EEECc-cCHHHcccCEEEEEEEECCCC
Confidence 3467777764332 234443322223334443 33223335566533 23310 01112234555666652 33
Q ss_pred CccccccceecchhhhhcccCCcccccccccCCCCC
Q 002247 94 SKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGA 129 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGt 129 (947)
++..+||++.|+|.++... .+...-+||..+..|+
T Consensus 106 ~~~~~iG~~~i~l~~l~~~-~~~~~W~~L~~~~~~s 140 (141)
T 2d8k_A 106 SRNDPIGEVSIPLNKVDLT-QMQTFWKDLKPSGPSS 140 (141)
T ss_dssp SSCEEEEEEEEETTTSCTT-SCEEEEECCEECCCCC
T ss_pred CCCcEEEEEEEEhhhhcCC-CCccEEEECcCCCCCC
Confidence 5678999999999998764 3677888998876553
No 45
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=67.65 E-value=14 Score=34.62 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=62.3
Q ss_pred eeeeeccccCc---ccce-EEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec-c-
Q 002247 19 QFQCNQVPKLK---KSAV-MISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST-G- 92 (947)
Q Consensus 19 qFhAtQVP~~g---wdkL-~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~-G- 92 (947)
-+.|..+|... .|-. .|++.|...++...||. +.-.+-+..|.. +..|. .....+... ..|-|.- +
T Consensus 33 v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~-v~~~t~nP~wne----~f~f~--v~~~~~~~~-L~i~V~d~d~ 104 (153)
T 3fbk_A 33 IIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQ-TVPDCRDPAFHE----HFFFP--VQEEDDQKR-LLVTVWNRAS 104 (153)
T ss_dssp EEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECC-CCTTCSSCEEEE----EEEEE--CCGGGTTSE-EEEEEEECCS
T ss_pred EEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEecc-ccCCCCCCcccc----EEEEe--cccHHhCCE-EEEEEEeCCC
Confidence 34566666532 2222 23445544344444332 222333344543 33332 111233334 5666652 2
Q ss_pred CCc-cccccceecchhhhhcccCCcccccccccCCCCCeeeeeee
Q 002247 93 SSK-SGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHVTIE 136 (947)
Q Consensus 93 SSk-SgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHVtIQ 136 (947)
.++ ..+||++.|+|.+......+..--+||.....|.-.|++++
T Consensus 105 ~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g~~~~lkv~ 149 (153)
T 3fbk_A 105 QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA 149 (153)
T ss_dssp SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGGGTCCCBCC
T ss_pred CCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhcccccceec
Confidence 244 78999999999999877788888999999888888888664
No 46
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.44 E-value=54 Score=29.71 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=44.6
Q ss_pred ccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcc------------cchhHHHHhhHHHHHHHHHHHHHHH
Q 002247 712 STGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSL------------KGENEMLIGNLQAEVENLKVQQNKL 779 (947)
Q Consensus 712 s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~------------kdekE~~i~~L~~E~e~Lk~q~~~L 779 (947)
.++..+..+.....++..|...++.++.+...+...|..+..- .......+.....++..+..++..|
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l 83 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKL 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555554321 1122345666666666666666666
Q ss_pred HhhHhHHHHhhHHHHHHH
Q 002247 780 QNSLIEEKLEKDNLAKQV 797 (947)
Q Consensus 780 k~sls~~~~EkE~l~kqv 797 (947)
+..+..-..+.+.|+.++
T Consensus 84 ~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 84 IDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 655554444444444443
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.72 E-value=51 Score=38.48 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=37.5
Q ss_pred hhHhHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 002247 481 SLATIK-ELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFEDDIDAVTH 543 (947)
Q Consensus 481 ~~~~I~-eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~ 543 (947)
-.+-|+ +|+-+++.|..++++|.. .|..|++-|..+..+ +|++|-||++-.+
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQls-------nIrvLQsnLedq~~k----IQRLEvDIdiqir 159 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQ-------HIQLLQKNVRAQLVD----MKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344455 889999999999998873 566677766655544 4688999887543
No 48
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=63.23 E-value=20 Score=32.46 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=57.6
Q ss_pred eeeeeccccCccc---ceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--cC
Q 002247 19 QFQCNQVPKLKKS---AVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--GS 93 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--GS 93 (947)
-..|..+|...+. --||.|-- |....|| ++.-.+-+..|...+.=.+. ++ ....+|-|.- ..
T Consensus 19 v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT-~~~~~t~nP~wne~f~f~~~---~~------~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 19 VLKAADLLAADFSGKSDPFCLLEL---GNDRLQT-HTVYKNLNPEWNKVFTFPIK---DI------HDVLEVTVFDEDGD 85 (133)
T ss_dssp EEEEESCCCSSSSSCCCEEEEEEE---TTEEEEC-CCCSSCSSCCCCEEEEEEES---CT------TCEEEEEEEEEETT
T ss_pred EEeeECCCCCCCCCCcCeEEEEEE---CCEEEEe-eeecCCCCCccccEEEEEec---CC------CCEEEEEEEECCCC
Confidence 4688888865433 23444332 3333333 33333445566654332221 11 2345666652 33
Q ss_pred CccccccceecchhhhhcccCCcccccccccCC----CCCeeeeeeeec
Q 002247 94 SKSGFLGEASIDFADFAAETEPLTLSLPLKFAN----SGAVLHVTIEKM 138 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a~kp~tVSLPLk~cn----sGtvLHVtIQ~L 138 (947)
++..+||++.|++.++... ....+||...+ ...-|||.|+.+
T Consensus 86 ~~~~~lG~~~i~l~~l~~~---~~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 86 KPPDFLGKVAIPLLSIRDG---QPNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EEEEECCBCEEEGGGCCSS---CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCeeEEEEEEHHHccCC---CceEEEeecCCCCCccceEEEEEEEEE
Confidence 5788999999999998653 23567776432 345678887653
No 49
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=62.88 E-value=9 Score=35.30 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=54.4
Q ss_pred eeeeeccccC--cccceE--EEeeeCCCCCccccccccccccCccccCccchh-hheecccCCccccccceeeeeeec--
Q 002247 19 QFQCNQVPKL--KKSAVM--ISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYV-TVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~--gwdkL~--vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyE-tvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
-.+|..+|.- |..--| |++.|...+....||. |..++| ||+|. +..|. ......+..+...|.|.-
T Consensus 26 V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~---v~~~t~---nP~wnE~f~f~-~v~~~~l~~~~L~~~V~d~d 98 (134)
T 2b3r_A 26 VMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTK---ISRKTR---NPTFNEMLVYS-GYSKETLRQRELQLSVLSAE 98 (134)
T ss_dssp EEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECC---CCCSCS---SCEEEEEEEEE-SCCHHHHTTCEEEEEEEECC
T ss_pred EEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCC---cCcCCC---CCCCccEEEEC-CcCHHHhCcCEEEEEEEECC
Confidence 4567777741 222223 4566644444444433 333332 45543 33331 012223345667777762
Q ss_pred cCCccccccceecchhhhhcccCCcccccccccCCCC
Q 002247 92 GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSG 128 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsG 128 (947)
..++..+||++.|+|++... ..+...-+||....+|
T Consensus 99 ~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L~~~~~g 134 (134)
T 2b3r_A 99 SLRENFFLGGITLPLKDFNL-SKETVKWYQLTAATYL 134 (134)
T ss_dssp SSSCCEEEEEEEEEGGGSCT-TSCEEEEEECBC----
T ss_pred CCCCCcEEEEEEEEhhhccC-CCCcceeEECCCccCC
Confidence 44567899999999999865 3466677888776554
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.50 E-value=1.1e+02 Score=33.97 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhh
Q 002247 673 HEALSTEIHMLRTEIEKLRKEQYNL 697 (947)
Q Consensus 673 ~~~~s~ei~~Lkaeie~L~~e~~~L 697 (947)
....+.+|+.|+.+++++.+++..+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 3456888888888888888865555
No 51
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=61.95 E-value=84 Score=31.23 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=81.5
Q ss_pred HHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCC-chhhHHHHHHHHHHhhHH-HHHHHhHHHHHHHHH
Q 002247 367 AVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNK-DKEVDMLKQKIRDQGDEI-QFFKKHAEDLEIYIK 444 (947)
Q Consensus 367 avqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~-~~E~~~L~qKI~dL~~Ei-e~ykke~E~Le~kme 444 (947)
-|.|++.-|+.+..-++. .+-..|-+.++.+++.|.. ..++..-..+|..|..-- .........+...+.
T Consensus 13 ~~~dl~~Wl~e~~~~l~s--------~d~G~Dl~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~~~i~~rl~ 84 (210)
T 3pdy_A 13 YLQDLLAWVEENQHRVDG--------AEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLG 84 (210)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcc--------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHH
Confidence 356666666665433321 1112355567778877763 556777777776663210 000122345777888
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002247 445 QLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK 524 (947)
Q Consensus 445 QLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLe 524 (947)
+|..-|..|..-=-.=--+|+ .++. +-.+|..+..=|++-+ .-+ .+.++++++..|..|..+...|.
T Consensus 85 ~l~~~~~~L~~~a~~R~~~L~--~L~~--f~~~~~~~~~Wl~eke-------~~~--~s~d~g~~~~~v~~l~~k~~~f~ 151 (210)
T 3pdy_A 85 RLDLQYAKLLNSSKARLRSLE--SLHS--FVAAATKELMWLNEKE-------EEE--VGFDWSDRNTNMTAKKESYSALM 151 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHH-------HHH--HHSCCSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHH-------HHH--HccccCCCchhHHHHHHHHHHHH
Confidence 888899888661111111233 2222 2333443333333322 222 24577888889988988888888
Q ss_pred HHHHHHHHHHH
Q 002247 525 RELDKQAQEFE 535 (947)
Q Consensus 525 kELe~Qaq~fe 535 (947)
.||+.....+.
T Consensus 152 ~el~~~~~~v~ 162 (210)
T 3pdy_A 152 RELELKEKKIK 162 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhHHHHH
Confidence 88876654443
No 52
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=60.85 E-value=1e+02 Score=28.25 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002247 439 LEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 439 Le~kmeQLe~Dye~Lkq 455 (947)
.+.||+.|..+.+...+
T Consensus 7 IKkKm~~lk~e~e~a~d 23 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALD 23 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555444444444
No 53
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=60.25 E-value=14 Score=33.33 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=53.5
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhh
Q 002247 244 GSDGSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRK 310 (947)
Q Consensus 244 ~se~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs 310 (947)
|++++|++||.||+-|.|.+-...++|..|.-.+=---.+--+++.+.-..+.+-+.+|.++..+..
T Consensus 12 ~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 12 PTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446799999999999999999999999998887777777778888888899999999988776653
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.76 E-value=43 Score=30.25 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhh
Q 002247 765 LQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINR 813 (947)
Q Consensus 765 L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~ 813 (947)
||-|+++||-+...|..-..+-....+.|..++.||+.+.....+.+.+
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444455555566666555555544443
No 55
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=57.83 E-value=2.5e+02 Score=31.86 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=92.3
Q ss_pred HhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCC-chhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH
Q 002247 368 VKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNK-DKEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQL 446 (947)
Q Consensus 368 vqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~-~~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQL 446 (947)
|.|++.-|+.+..-++.-. -..+-+.++.|++.|.. ..++.....+|..|...- .|+ -.+..|
T Consensus 11 v~dl~~Wl~E~~~~L~S~d--------~GkDL~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a-~~~-------~~~~~L 74 (450)
T 3r6n_A 11 TSECLGWMRQQRAEMDMVA--------WGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADL-REK-------SAIYQL 74 (450)
T ss_dssp HHHHHHHHHHHHHHTTSCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH-------HHHHHH
T ss_pred HHHHHHHHHHHHHhcCccc--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCc-------HHHHHH
Confidence 4555555555554443211 11234446666666652 445666666665554321 111 145677
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002247 447 TEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLED-KIKQQSEEYSESLISINELECQVKELKR 525 (947)
Q Consensus 447 e~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~-eLkeQ~~efSe~l~tI~~Le~q~~sLek 525 (947)
..-|+.|.. .+ +. ..+.| . +.+..+.+.+...-=+.+ +--..+..+++.+.+|..+..+.+.|..
T Consensus 75 ~~~y~~L~~----~a-~~---Rr~~L--e----~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~ 140 (450)
T 3r6n_A 75 EEEYENLLK----AS-FE---RMDHL--R----QLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMS 140 (450)
T ss_dssp HHHHHHHHH----HH-HH---HHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH----HH-HH---HHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHH
Confidence 778888765 11 11 11111 1 112222222111111111 1112344566777788888888888888
Q ss_pred HHHHHHHHHHH---hHHHHHhh------hHHHHHH-------HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh
Q 002247 526 ELDKQAQEFED---DIDAVTHA------KTEQEQR-------AIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMA 585 (947)
Q Consensus 526 ELe~Qaq~fe~---dl~a~~~~------~~EqEqR-------ai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~ 585 (947)
||..+...+.. .-+.|... .++.-.. ...+-.+-|+.+++.+..+-++..|......-|.
T Consensus 141 EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~EaesWL~ 216 (450)
T 3r6n_A 141 QLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLK 216 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88877665543 22222211 1111111 1223335677777777777777777766555544
No 56
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=56.86 E-value=22 Score=32.57 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=34.3
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002247 478 CIESLATIKELESQSERLEDKIKQQSEEYSESL----ISINELECQVKELKRELDKQAQEFED 536 (947)
Q Consensus 478 cSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l----~tI~~Le~q~~sLekELe~Qaq~fe~ 536 (947)
||+--+.|+.|+++...||..|.+...+|..-+ ..|..|++++..+..+++.|.+.+..
T Consensus 7 ~~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 69 (95)
T 3mov_A 7 HSSRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQ 69 (95)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777766666666665544 35667888888888888888877754
No 57
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=55.90 E-value=1.2e+02 Score=27.57 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002247 416 DMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVL 453 (947)
Q Consensus 416 ~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~L 453 (947)
..++.||.-|--+.+.+....+.++.++.+++..+..+
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~ 42 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQL 42 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666665555555555555555555555544443
No 58
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=55.90 E-value=55 Score=29.55 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=56.5
Q ss_pred eeeeeccccCccc---ceEEE--eeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--
Q 002247 19 QFQCNQVPKLKKS---AVMIS--LVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~vS--iVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
-+.|..+|...+. --||. +.|...|....|| ++.-.+-+..|..+ ..|.- .....+.....+|-|.-
T Consensus 27 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT-~~~~~t~nP~wne~----f~f~~-~~~~~~~~~~l~i~V~d~d 100 (141)
T 1v27_A 27 ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT-KTVKKTLEPKWNQT----FIYSP-VHRREFRERMLEITLWDQA 100 (141)
T ss_dssp EEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBC-CCCSSCSSCCCCCC----CEECS-CCTTGGGTCEEEEEEEEBC
T ss_pred EEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeC-ccccCCCCCccccE----EEEcc-CCHHHhcCCEEEEEEEECC
Confidence 4667777765432 23443 3443334444433 33333444555533 33310 11123345666777752
Q ss_pred cCC--ccccccceecchhhhhcccCCcccccccccCCCCC
Q 002247 92 GSS--KSGFLGEASIDFADFAAETEPLTLSLPLKFANSGA 129 (947)
Q Consensus 92 GSS--kSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGt 129 (947)
..+ +..+||++.|+|++.... ....-+||...+.|.
T Consensus 101 ~~~~~~~~~lG~~~i~l~~l~~~--~~~~W~~L~~~~~g~ 138 (141)
T 1v27_A 101 RVREEESEFLGEILIELETALLD--DEPHWYKLQTHDSGP 138 (141)
T ss_dssp SSSSCCBCCCEEEEEEGGGCCCS--SEEEEEECBCCSSCC
T ss_pred CCcCCCCceEEEEEEEccccCCC--CCCceEECcccccCC
Confidence 223 388999999999997643 356778888877663
No 59
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=55.72 E-value=25 Score=33.64 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=34.8
Q ss_pred ceeeeeeec--cCCccccccceecchhhhhcccCCc----c-cccccccC----CCCCeeeeeeeeccC
Q 002247 83 KIYHFIVST--GSSKSGFLGEASIDFADFAAETEPL----T-LSLPLKFA----NSGAVLHVTIEKMDG 140 (947)
Q Consensus 83 ~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~----t-VSLPLk~c----nsGtvLHVtIQ~L~~ 140 (947)
...+|.|.- ..++..+||++.|+|++........ . ..+||... .....|||.|..+..
T Consensus 74 ~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 74 HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 345666652 3446789999999999998764431 1 35676542 234678999987754
No 60
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.72 E-value=40 Score=30.57 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=37.7
Q ss_pred cceeeeeeec--cCCccccccceecchhhhhcccC-Ccccc-cccccCCC---CCeeeeeeeeccC
Q 002247 82 EKIYHFIVST--GSSKSGFLGEASIDFADFAAETE-PLTLS-LPLKFANS---GAVLHVTIEKMDG 140 (947)
Q Consensus 82 e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~k-p~tVS-LPLk~cns---GtvLHVtIQ~L~~ 140 (947)
....+|-|.- ..++..+||++.|+|.++..... ...+. +||...+. +..|||.|+..-+
T Consensus 69 ~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 69 SSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp TCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 3555666652 34567899999999999865432 12233 55765432 3677999887654
No 61
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.83 E-value=55 Score=29.53 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=40.4
Q ss_pred HhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhH
Q 002247 720 IQKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSL 783 (947)
Q Consensus 720 l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sl 783 (947)
+..-...++++..+|++|+-|++.+++.-..+....++.-.....|..|.+.|+.++..-...|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566788888899988888888877766655555444444445555555555555544433
No 62
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=54.43 E-value=68 Score=36.09 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=61.9
Q ss_pred hHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCCchhhHHHHHHHHHHhhHH
Q 002247 350 LRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDEI 429 (947)
Q Consensus 350 L~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~~~E~~~L~qKI~dL~~Ei 429 (947)
|+-.|...+.++.+.-..+..+=+++.+.-..+.+..+.+.++ .++| +.-+..|+.+|.+...-|
T Consensus 72 L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~---------s~eL------e~~i~~lk~~V~~q~~~i 136 (390)
T 1deq_A 72 LRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQI---------NEDL------RSRIEILRRKVIEQVQRI 136 (390)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHH---------HHHH------HHHHHHHHHHHHHHhHHH
Confidence 4445555566777777888888888876665555544322211 1112 345678999999988889
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 002247 430 QFFKKHAEDLEIYIKQLTEDCQ 451 (947)
Q Consensus 430 e~ykke~E~Le~kmeQLe~Dye 451 (947)
-.++...+.+..+|+.|+-|++
T Consensus 137 r~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999973
No 63
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=53.96 E-value=83 Score=31.35 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=48.7
Q ss_pred HHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHH
Q 002247 733 KFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQ 799 (947)
Q Consensus 733 ~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~q 799 (947)
.|..|+.|...+...+..+...=.+|...+..|+.|+.+|..|++.+-..+..-+.|...|=....+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666555577888899999999999999999988888777777666444433
No 64
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=52.50 E-value=28 Score=31.80 Aligned_cols=100 Identities=11% Similarity=0.170 Sum_probs=54.2
Q ss_pred eeeeeccccCccc---ceEEEeeeC-CCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--c
Q 002247 19 QFQCNQVPKLKKS---AVMISLVPD-DVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--G 92 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~vSiVp~-DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--G 92 (947)
-+.|..+|...+. --||.|.-. +.++...+.+++.-.+-+..|... ..| .......+.....+|-|.- .
T Consensus 35 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~----f~f-~~~~~~~~~~~~l~i~V~d~d~ 109 (142)
T 2chd_A 35 IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNET----LQY-HGITEEDMQRKTLRISVCDEDK 109 (142)
T ss_dssp EEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEE----EEE-ESCCHHHHHHCEEEEEEEEECT
T ss_pred EEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCE----EEE-cccCHHHccCCEEEEEEEECCC
Confidence 4577888865322 234433322 222233333333333444555433 222 1122334445667777762 3
Q ss_pred CCccccccceecchhhhhcccCCccccccccc
Q 002247 93 SSKSGFLGEASIDFADFAAETEPLTLSLPLKF 124 (947)
Q Consensus 93 SSkSgiLGEasINlAdYa~a~kp~tVSLPLk~ 124 (947)
.++..+||++.|+|++... ..+....+||..
T Consensus 110 ~~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~~ 140 (142)
T 2chd_A 110 FGHNEFIGETRFSLKKLKA-NQRKNFNICLER 140 (142)
T ss_dssp TSCEEEEEEEEEEGGGCCT-TCCEEEEEECBC
T ss_pred CCCCcEEEEEEEEHHHcCC-CCccEEEEeccc
Confidence 4567899999999999875 447778888764
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.39 E-value=25 Score=29.79 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 419 KQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 419 ~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
++++.+|..+.+.+..++..|+.+|..|+..+.-|++
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777788888888888888888888876
No 66
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=52.10 E-value=1.1e+02 Score=26.87 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=35.5
Q ss_pred HHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhcccc
Q 002247 773 KVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKY 821 (947)
Q Consensus 773 k~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~ 821 (947)
..+....-.....-+.+...|+++|.+|+.+|.+-++.+.....+|...
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444456667778999999999999999999888776666544
No 67
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=51.68 E-value=56 Score=31.02 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQC 459 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~d 459 (947)
.+.+|++.+.=-..-+..=|.+||.+-..+++|..++..|..+|..
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4666666654333334444789999999999999999999887654
No 68
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=51.41 E-value=27 Score=31.84 Aligned_cols=46 Identities=26% Similarity=0.267 Sum_probs=32.9
Q ss_pred ccceeeeeeec--cCCccccccceecchhhhhcccCCcccccccccCCC
Q 002247 81 KEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANS 127 (947)
Q Consensus 81 ~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cns 127 (947)
.....+|-|-- ..++..+||.+.|+|++... ..+...-+||..+..
T Consensus 94 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L~~~~~ 141 (142)
T 1rh8_A 94 MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH-LDNTPRWYPLKEQTE 141 (142)
T ss_dssp TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG-GTTCCEEEECBCCCC
T ss_pred cCCEEEEEEEECCCCCCCceEEEEEEecccccc-CCCCCeEEECCccCC
Confidence 44566666652 34577899999999998765 346667788887654
No 69
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.37 E-value=40 Score=30.20 Aligned_cols=70 Identities=24% Similarity=0.268 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHh
Q 002247 737 AKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQK 806 (947)
Q Consensus 737 lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~k 806 (947)
+-+|++.+..|=..+..-|+...+.-.-|-..|++|-.++..|++-|-.=..-+.+++.+|-.|+.+|++
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4467777777777778888888777788888888888888888777666666666777777777777664
No 70
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.98 E-value=1.8e+02 Score=27.92 Aligned_cols=98 Identities=23% Similarity=0.232 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhhhhhh---ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 002247 589 DENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIKDQNG---VKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDE 665 (947)
Q Consensus 589 ~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~e---~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~ 665 (947)
-+|=++..+.+.=..|.|.-..+|+.-|--|.+-|+-..+|.- --+..|..-++.+..+.+.-+.||...-+.|.
T Consensus 7 kANSeAC~dGLrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Ln-- 84 (121)
T 3mq7_A 7 KANSEAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLN-- 84 (121)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3455667777877788899999999999999999998775543 23555666666655554444555544444443
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 002247 666 HKSEAQKHEALSTEIHMLRTEIEKLRKE 693 (947)
Q Consensus 666 ~~~~~~~~~~~s~ei~~Lkaeie~L~~e 693 (947)
+...+.+.|++.|+.+++-|...
T Consensus 85 -----q~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 85 -----HKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhhchhhhhH
Confidence 34556677777777777766553
No 71
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.41 E-value=1.5e+02 Score=26.87 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002247 439 LEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 439 Le~kmeQLe~Dye~Lkq 455 (947)
.+.||+-|..+.+...+
T Consensus 7 iKkKm~~lk~e~e~a~d 23 (101)
T 3u59_A 7 IKKKMQMLKLDKENAID 23 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 72
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.84 E-value=1.7e+02 Score=27.22 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=47.4
Q ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHH
Q 002247 534 FEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLE 613 (947)
Q Consensus 534 fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LE 613 (947)
.+..+..|...-.+...+-..||..+ .++..|+..||.. -|++-=++...|-.+-..+-..+.+|.
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~-----------~~ie~ElEeLTas---LFeEAN~MVa~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEA-----------DKLNKEVEDLTAS---LFDEANNMVADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444444444454443 4567899999964 688877888888888777778888888
Q ss_pred HHHHHh
Q 002247 614 EMLQKA 619 (947)
Q Consensus 614 e~Lqk~ 619 (947)
+.|+..
T Consensus 90 ~qL~d~ 95 (97)
T 2eqb_B 90 EQLREK 95 (97)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 777654
No 73
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=48.59 E-value=1.8e+02 Score=27.51 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHh---hHhHHHHhhHHHHH
Q 002247 723 WNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQN---SLIEEKLEKDNLAK 795 (947)
Q Consensus 723 ~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~---sls~~~~EkE~l~k 795 (947)
....+..|..+|..|++.-..++.=|-.+---+|+.|-.-|...+=++.+-.-|+..-- .|-.+..||+.|+.
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~ 108 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLV 108 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777788999999988888888888877776532 33355566666654
No 74
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.86 E-value=51 Score=32.22 Aligned_cols=55 Identities=25% Similarity=0.359 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhh
Q 002247 570 AERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELSLIK 627 (947)
Q Consensus 570 ~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~~~~ 627 (947)
..++..|+..||.. -|++-=++...|-.+-..+-..+.+|++.|..+..=|.+.+
T Consensus 69 ~~~ie~ElE~LTas---LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq 123 (135)
T 2e7s_A 69 ADKLNKEVEDLTAS---LFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLT 123 (135)
T ss_dssp THHHHHHHHHHHHH---HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC----
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999964 68887788888888888888888888888888766666533
No 75
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=47.16 E-value=1.4e+02 Score=26.78 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHH
Q 002247 731 EKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKE 809 (947)
Q Consensus 731 ~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~ 809 (947)
.++++-+.++..++++.|......+.+.+.....|..+...|-.| +.+-+--.+.|.++-..|++.|..-++
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777666666666666666666666666666 444444455666666666666555444
No 76
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=46.55 E-value=1.7e+02 Score=26.64 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHH-------HHHHHhhHhHHHHhhHHHHHHHH
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQ-------QNKLQNSLIEEKLEKDNLAKQVF 798 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q-------~~~Lk~sls~~~~EkE~l~kqv~ 798 (947)
++..|..++.-++.|-..+..+|..+-..+.....-|..+..+.+.|..+ |+.++--+.+-+-+...+..|+.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888888888888888888888888888888888877764 55555555555555555554444
Q ss_pred HH
Q 002247 799 QL 800 (947)
Q Consensus 799 qL 800 (947)
--
T Consensus 85 ~~ 86 (96)
T 3q8t_A 85 YA 86 (96)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.45 E-value=1.3e+02 Score=28.94 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHh
Q 002247 548 QEQRAIRAEEELRKTR---WKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQKANDELS 624 (947)
Q Consensus 548 qEqRai~aeeaLrk~r---~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk~neeL~ 624 (947)
.++...+|.+.|+.+. |--.-||..|..-+...-.|. ...+-+|+-....|-..||++.+++.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~--------------q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG--------------QKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999988 666778888887665544443 33477888888889999999888877
Q ss_pred hhhhhhh
Q 002247 625 LIKDQNG 631 (947)
Q Consensus 625 ~~~~~~e 631 (947)
..+.+++
T Consensus 96 rlr~~~~ 102 (121)
T 3mq7_A 96 RLRRENQ 102 (121)
T ss_dssp HHHHHHH
T ss_pred HHHhhch
Confidence 7655544
No 78
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.19 E-value=64 Score=30.09 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=48.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhh---hh-ccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 002247 672 KHEALSTEIHMLRTEIEKLRKEQYNLS---EH-GKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEE 747 (947)
Q Consensus 672 ~~~~~s~ei~~Lkaeie~L~~e~~~L~---e~-~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~e 747 (947)
-...+..+|+-|..|+++|+.++..|= ++ .++-|.+-.++-+=+.-+......++. ...++..|+.|.++++.-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~--~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR--LREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777666542 22 155676666666666655555555544 346667777777776665
Q ss_pred HHhh
Q 002247 748 LISM 751 (947)
Q Consensus 748 L~~~ 751 (947)
+..|
T Consensus 91 v~~l 94 (100)
T 1go4_E 91 LRAM 94 (100)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 5443
No 79
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=44.80 E-value=43 Score=29.58 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHh
Q 002247 247 GSVEKLKNEIAVMMRQVELSELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLR 309 (947)
Q Consensus 247 ~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLK 309 (947)
++|++||.||+-|.|.+-...++|-.|.-.+=---.+--+++.+.-..+.+-+.+|.++-.|.
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999988877666666667788888888888888888776653
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.40 E-value=18 Score=29.98 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 428 EIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 428 Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
+++..+.++++|..+++.|....++|+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777766666666555554
No 81
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.24 E-value=1.8e+02 Score=33.39 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHh-hhhHHHHHHHHHHHHHHHH
Q 002247 646 KQIQKMYLELDHSSSQLIDEHKSEAQKH-EALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 646 k~ie~m~~el~~kSkqle~~~~~~~~~~-~~~s~ei~~Lkaeie~L~~ 692 (947)
.++..|-.-+...+.+++.++..-.++. ..+..-|..|.+.+++|+.
T Consensus 135 ~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ 182 (464)
T 1m1j_B 135 KQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHK 182 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 3333333334344444544444333332 2345555555555544443
No 82
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=42.88 E-value=2.2e+02 Score=27.55 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHH-HhhHhHHHHhhHHHHHHHHH
Q 002247 721 QKWNRERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKL-QNSLIEEKLEKDNLAKQVFQ 799 (947)
Q Consensus 721 ~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~L-k~sls~~~~EkE~l~kqv~q 799 (947)
.....+-..|.++..-+++++.++......+.....+++.....|+..+.+++.++..| ..-.-+-..-...|....-+
T Consensus 25 ~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l~ek~~~e~~~le~~L~e~~e~ 104 (155)
T 2oto_A 25 IRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEA 104 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHhhhhhhccccCCCCchhhhchhHHHHhhhhhhhhhhhhh
Q 002247 800 LKDELQKKKEEINRTGKGLKKYGGPVSDAQMTSMKERLRKGQKKLNKAELE 850 (947)
Q Consensus 800 Lk~eL~kkE~~~~~~ek~lk~~~gr~~~~tk~~~~nk~~~~~i~~~e~~~e 850 (947)
++++|......+...+.......-+.-+--+-...++....+|+-++.+++
T Consensus 105 ~~~~l~~~~e~~~~~~~~~~e~~~~~~~~ek~ls~As~~~~k~~~~e~~~~ 155 (155)
T 2oto_A 105 LELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELE 155 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 83
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.82 E-value=28 Score=32.51 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQL 446 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQL 446 (947)
.++..|+.+|..|..|.+..+++++.|++++++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999888888888888888877663
No 84
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=41.96 E-value=95 Score=32.11 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=51.0
Q ss_pred eeeeeccccCccc---ceEEEeeeCCCCCccccccccccccCccccCccchhh-heecccCCccccccceeeeeeec--c
Q 002247 19 QFQCNQVPKLKKS---AVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVT-VKLIREPKTGYIKEKIYHFIVST--G 92 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEt-vkl~qD~~s~~~~e~iykfvVs~--G 92 (947)
-+.|..+|...+. --||.|.-..-|+...||. |..++ .+|+|.- ..|. .....+..+..+|-|.- .
T Consensus 26 v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~---v~~~t---~nP~wne~f~f~--v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 26 ILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTK---VHRKT---LNPIFNETFQFS--VPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp EEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECC---CCCSC---SSCEEEEEEEEE--CCGGGGSSCCCEEEEEECCS
T ss_pred EEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCC---ccCCC---CCCcEeeEEEEE--ecHHHhcCCEEEEEEEEcCC
Confidence 4577778764321 2244332222345455443 22222 2455532 2221 22223344566777763 4
Q ss_pred CCccccccceecc-hhhhhcccCCccccccccc
Q 002247 93 SSKSGFLGEASID-FADFAAETEPLTLSLPLKF 124 (947)
Q Consensus 93 SSkSgiLGEasIN-lAdYa~a~kp~tVSLPLk~ 124 (947)
.++..+||++.|+ +.+..+...+...-+||..
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~ 130 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 130 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred CCCCceEEEEEeccccccccCCccceeeecccc
Confidence 5678899999995 6666654445555666643
No 85
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=41.84 E-value=23 Score=32.37 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=37.6
Q ss_pred ceeeeeeec--cCCccccccceecchhhhhcccC-CcccccccccCCCCCeeeeeeeeccC
Q 002247 83 KIYHFIVST--GSSKSGFLGEASIDFADFAAETE-PLTLSLPLKFANSGAVLHVTIEKMDG 140 (947)
Q Consensus 83 ~iykfvVs~--GSSkSgiLGEasINlAdYa~a~k-p~tVSLPLk~cnsGtvLHVtIQ~L~~ 140 (947)
....|.|.- ..++..+||++.|+|+++..... +...-+||+. .| -|||.|..-++
T Consensus 77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G-~i~l~l~~~~~ 134 (136)
T 1gmi_A 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EG-KVYVIIDLSGS 134 (136)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SC-EEEEEEEEEEE
T ss_pred CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--Ce-EEEEEEEEEec
Confidence 455666652 34567899999999999987533 3356677764 34 57998876543
No 86
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=41.25 E-value=1.4e+02 Score=30.05 Aligned_cols=121 Identities=18% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHH---------hHH-HHhhhhh
Q 002247 559 LRKTRWKNTVTAERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQKAHLEEMLQK---------AND-ELSLIKD 628 (947)
Q Consensus 559 Lrk~r~~na~~~e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~qk~~LEe~Lqk---------~ne-eL~~~~~ 628 (947)
+.+.+...+-.-++|-++|-++|.++.-+ +.|..||.|+-.+=..-..+-|...+ ||+ |+..+..
T Consensus 22 ~h~qy~~ks~~yd~l~e~y~r~sqEiq~K-----r~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~ 96 (170)
T 3l4q_C 22 YHQQYQDKSREYDQLYEEYTRTSQELQMK-----RTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILL 96 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHH
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 002247 629 QNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLSE 699 (947)
Q Consensus 629 ~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~e 699 (947)
-|+ .+..=+.+|.++..+|+..=+...+...-+-.+|--||.++-.|.+..+....
T Consensus 97 N~e---------------~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~ 152 (170)
T 3l4q_C 97 NSE---------------RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLV 152 (170)
T ss_dssp HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
No 87
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=40.30 E-value=58 Score=29.87 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=26.6
Q ss_pred CccccccceecchhhhhcccCCcccccccccC-----CCCCeeeeeee
Q 002247 94 SKSGFLGEASIDFADFAAETEPLTLSLPLKFA-----NSGAVLHVTIE 136 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a~kp~tVSLPLk~c-----nsGtvLHVtIQ 136 (947)
++..+||++.|+|.+.. .....-+||..- ..| -|||.|.
T Consensus 101 ~~~~~lG~~~i~l~~l~---~~~~~w~~L~~~~~~~~~~G-~i~l~l~ 144 (148)
T 3kwu_A 101 ESDDFLGQTIIEVRTLS---GEMDVWYNLDKRTDKSAVSG-AIRLHIS 144 (148)
T ss_dssp CSSEEEEEEEEEGGGCC---SEEEEEEECBCSSTTCCCCC-EEEEEEE
T ss_pred CCCccEEEEEEEHHHCc---CCCCEEEEcccCCCCCCCce-EEEEEEE
Confidence 68899999999999983 233455677632 234 5567664
No 88
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=40.19 E-value=40 Score=31.17 Aligned_cols=102 Identities=12% Similarity=0.165 Sum_probs=55.4
Q ss_pred eeeeccccCccc---ceEE--EeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--c
Q 002247 20 FQCNQVPKLKKS---AVMI--SLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--G 92 (947)
Q Consensus 20 FhAtQVP~~gwd---kL~v--SiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--G 92 (947)
++|..+|...+. --|| ++.| +.++...+.+++.-.+-+..|...+.=.+ ..... ....+|-|.- .
T Consensus 38 ~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~v------~~~~~-~~~L~i~V~d~d~ 109 (149)
T 1a25_A 38 RDAKNLVPMDPNGLSDPYVKLKLIP-DPKSESKQKTKTIKCSLNPEWNETFRFQL------KESDK-DRRLSVEIWDWDL 109 (149)
T ss_dssp EEEESCCCCSTTSCCCEEEEEEEES-CTTCSSCEECCCCSSCSSCEEEEEEEEEC------CSGGG-GCEEEEEEEECCS
T ss_pred EEeeCCCCCCCCCCcCeEEEEEEEC-CCCCcceEecceeCCCCCCcCCcEEEEEe------ccccC-CCEEEEEEEECCC
Confidence 578888764322 2343 4444 22222222233333344555654332222 11112 2345666652 3
Q ss_pred CCccccccceecchhhhhcccCCcccccccccCCCCCee
Q 002247 93 SSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVL 131 (947)
Q Consensus 93 SSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvL 131 (947)
.++..+||++.|+|++.... +..--+||....+|.+-
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~--~~~~W~~L~~~~~g~~~ 146 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA--GVDGWFKLLSQEEGEYF 146 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC--CEEEEEECBCHHHHTTC
T ss_pred CCCCCEEEEEEEEHHHhCcC--ccCCeEEccCCCCCccc
Confidence 45678999999999999764 56667888877666543
No 89
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.17 E-value=2e+02 Score=33.74 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=61.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHH-HHHhHHHHHHHHHHHHHh
Q 002247 672 KHEALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEK-KFASAKQEAAKAHEELIS 750 (947)
Q Consensus 672 ~~~~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~-~ia~lk~Ea~~~~~eL~~ 750 (947)
++..+.+.=+-++..|++|+.+...+ ++......+... ....|+..+....+.-|.
T Consensus 51 LQglLdkqErDltkrINELKnqLEdl-----------------------sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNt 107 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEY-----------------------QKNNKDSHSLTTNIMEILRGDFSSANNRDNT 107 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH-----------------------HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHH-----------------------HhhchhHHHHHHHHHHHHHHHHHhhhccchh
Confidence 34444555555667777777644444 222233333322 224455555555555555
Q ss_pred hhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhhHH
Q 002247 751 MRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKKKE 809 (947)
Q Consensus 751 ~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kkE~ 809 (947)
+...-++++..|.-|+.+|.+-..+...|+..| +++..+|.+|+.|+..+=+
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL-------edq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV-------RAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777666666665544 4566666777776665544
No 90
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=39.80 E-value=24 Score=33.73 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=46.3
Q ss_pred eeeeccccCc---ccc--eEEEeeeCCCCCccccccccccccCccccCccchh-hheecccCCccccccceeeeeeec--
Q 002247 20 FQCNQVPKLK---KSA--VMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYV-TVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 20 FhAtQVP~~g---wdk--L~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyE-tvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
.+|..+|... ..- .-|.+.|.+.++...+ |+.|...+ -||+|- +..|. .....+..+..+|-|.-
T Consensus 50 i~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~--kT~v~~~t---lnP~wnE~F~f~--v~~~~l~~~~L~~~V~d~d 122 (155)
T 2z0u_A 50 IQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLF--RTRPLDAS---DTLVFNEVFWVS--MSYPALHQKTLRVDVCTTD 122 (155)
T ss_dssp EEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEE--ECCCEECC---SSEEEEEEEEEE--CCHHHHHHCEEEEEEEEEC
T ss_pred EEccCcCCcccCCCCCEEEEEEEecCCCCCccce--eCCcCCCC---CCCccccEEEEE--cCHHHhCcCEEEEEEEECC
Confidence 4566666532 222 2345556554433222 22333333 256553 32331 22334556677777762
Q ss_pred cCCccccccceecchhhhhc
Q 002247 92 GSSKSGFLGEASIDFADFAA 111 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~ 111 (947)
..++..+||++.|+|+++..
T Consensus 123 ~~~~~d~iG~~~i~l~~l~~ 142 (155)
T 2z0u_A 123 RSHLEECLGGAQISLAEVCR 142 (155)
T ss_dssp TTSCEEEEEEEEEECTTSCT
T ss_pred CCCCCcEEEEEEEEHHHccC
Confidence 45678899999999999853
No 91
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=39.78 E-value=28 Score=33.90 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=59.7
Q ss_pred eeeeeccc-cCcc--cceEEEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--cC
Q 002247 19 QFQCNQVP-KLKK--SAVMISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--GS 93 (947)
Q Consensus 19 qFhAtQVP-~~gw--dkL~vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--GS 93 (947)
-+.|..+| ...+ .--||.|-- |..+.||. +.-.+-+..|...+ .|.-++ .....|.|.- ..
T Consensus 42 V~~A~~L~~~~~~~~sDPYv~v~~---~~~~~kT~-v~~~tlnP~Wne~f----~f~v~~------~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 42 VISAKLKENKKNWFGPSPYVEVTV---DGQSKKTE-KCNNTNSPKWKQPL----TVIVTP------VSKLHFRVWSHQTL 107 (173)
T ss_dssp EEEEEECCCC--CCCCCEEEEEEE---TTEEEECC-CCSSCSSCEEEEEE----EEEECT------TCEEEEEEEECCSS
T ss_pred EEEeECCCCcccCCCCCeEEEEEE---CCEEeEcc-ccCCCCCCeECCEE----EEEeCC------CCEEEEEEEECCCC
Confidence 56788877 3211 223444322 22444443 22233345555433 332122 4456676652 33
Q ss_pred CccccccceecchhhhhcccC----CcccccccccCC----CCCeeeeeeeeccC
Q 002247 94 SKSGFLGEASIDFADFAAETE----PLTLSLPLKFAN----SGAVLHVTIEKMDG 140 (947)
Q Consensus 94 SkSgiLGEasINlAdYa~a~k----p~tVSLPLk~cn----sGtvLHVtIQ~L~~ 140 (947)
++..+||++.|++.++..... ...+.+||...+ ...-|+|.+..+.-
T Consensus 108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 467799999999999886432 336688887642 22447888887754
No 92
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=39.69 E-value=1.5e+02 Score=25.28 Aligned_cols=15 Identities=0% Similarity=0.248 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhh
Q 002247 442 YIKQLTEDCQVLEQE 456 (947)
Q Consensus 442 kmeQLe~Dye~LkqE 456 (947)
-|.++-..|+.+.+-
T Consensus 10 il~eiRaQYE~ia~k 24 (77)
T 3trt_A 10 AMRDVRQQYESVAAK 24 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555566666553
No 93
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=39.11 E-value=52 Score=30.19 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=32.3
Q ss_pred cccccceeeeeeec--cCCccccccceecchhhhhcccCCcccccccccC
Q 002247 78 GYIKEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFA 125 (947)
Q Consensus 78 ~~~~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~c 125 (947)
..+..+...|.|.- ..++..+||++.|+|+++.. ..+...=.||...
T Consensus 85 ~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~-~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV-PLGAAQWGELKTS 133 (138)
T ss_dssp TSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSS-CTTCCEEEECCCC
T ss_pred HHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccC-cccccceeeCcCC
Confidence 34556677777763 44678899999999999742 2355556666654
No 94
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=39.04 E-value=2e+02 Score=25.33 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=42.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 002247 428 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS 507 (947)
Q Consensus 428 Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efS 507 (947)
||+..+..+..|+..|.+++..|+.- ++. ....|..+++++..+-.++..|..+|-
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~---------------~~~---------~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVE---------------AAN---------YQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777666431 111 224567777777777777777777775
Q ss_pred hhhhhHHHHHHHHH
Q 002247 508 ESLISINELECQVK 521 (947)
Q Consensus 508 e~l~tI~~Le~q~~ 521 (947)
+-+..=-.|+..|.
T Consensus 58 ~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 58 DLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 44443334444443
No 95
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.92 E-value=1e+02 Score=28.30 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=30.4
Q ss_pred ccccceeeeeeec--cCCccccccceecchhhhhcccCCcccccccccC
Q 002247 79 YIKEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFA 125 (947)
Q Consensus 79 ~~~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~c 125 (947)
.+..+..+|-|.- ..++..+||++.|+|++.... .+...-.||...
T Consensus 95 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~ 142 (147)
T 2enp_A 95 EAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLV-KGGHWWKALIPS 142 (147)
T ss_dssp HHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTT-TCCCEEECCBCC
T ss_pred HhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCC-CCccEEEEeecC
Confidence 3445667777763 345677999999999988542 344455566543
No 96
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.00 E-value=90 Score=27.71 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=33.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002247 480 ESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDKQAQEFE 535 (947)
Q Consensus 480 s~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~Qaq~fe 535 (947)
.....|..|++++..|+..|....- |+.+...+..|-.++..++.+|+.-..+.+
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~-y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASF-FSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTG-GGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777666644321 334455566677777777777766655554
No 97
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.94 E-value=2.3e+02 Score=25.65 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=28.9
Q ss_pred cHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 002247 633 KLQELSDQLEQ---KDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKE 693 (947)
Q Consensus 633 kl~eL~~q~d~---K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e 693 (947)
.|+.|++.+-. |...+|+-=..|+.+-.++.. +........|..+|.-|+..|+.+..+
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~--~~~~~~~~~ye~~i~~Lr~~i~~~~~e 71 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKG--QGKSRLGDLYEEEMRELRRQVDQLTND 71 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 444444443344333333332 122334556677777777777666653
No 98
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=37.93 E-value=23 Score=34.46 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=36.6
Q ss_pred eeeeeeec--cCCccccccceecchhhhhccc---CCcccccccccCCCCCeeeeeeee
Q 002247 84 IYHFIVST--GSSKSGFLGEASIDFADFAAET---EPLTLSLPLKFANSGAVLHVTIEK 137 (947)
Q Consensus 84 iykfvVs~--GSSkSgiLGEasINlAdYa~a~---kp~tVSLPLk~cnsGtvLHVtIQ~ 137 (947)
...|.|.= ..++..+||.++|+|.++.... .+...-+||.. +.-|||.|+.
T Consensus 100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~---~G~i~l~l~~ 155 (157)
T 2fk9_A 100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP---EGKVFVVITL 155 (157)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS---SCEEEEEEEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC---CcEEEEEEEE
Confidence 34455542 3356779999999999998752 55677889964 4567998874
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.74 E-value=4.5e+02 Score=28.99 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 002247 438 DLEIYIKQLTED 449 (947)
Q Consensus 438 ~Le~kmeQLe~D 449 (947)
+|+..+.....+
T Consensus 371 ~le~~~~~~~~~ 382 (487)
T 3oja_A 371 ALDEQVSNGRRA 382 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 100
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.72 E-value=39 Score=28.28 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=22.4
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 420 QKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 420 qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
+.|.+|.++++.+..+++.|...+.+|...+..|++
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777777666666666654
No 101
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=37.49 E-value=1.8e+02 Score=28.23 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=41.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhcccch---hHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHH
Q 002247 728 DDLEKKFASAKQEAAKAHEELISMRSLKGE---NEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDEL 804 (947)
Q Consensus 728 ~~L~~~ia~lk~Ea~~~~~eL~~~k~~kde---kE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL 804 (947)
..|..+||.+.+++..+...|..+.....+ ++.....+|++++.=.+....| +.|+.+|.-|....
T Consensus 9 ~~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~l-----------eeL~~ki~eL~~kv 77 (125)
T 2pms_C 9 VAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKL-----------EELSDKIDELDAEI 77 (125)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHH
Confidence 467888899999988888888776664432 2333344677776655555544 33455554444444
Q ss_pred HhhHHHHhh
Q 002247 805 QKKKEEINR 813 (947)
Q Consensus 805 ~kkE~~~~~ 813 (947)
-+-+..+..
T Consensus 78 A~le~e~~~ 86 (125)
T 2pms_C 78 AKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 444444333
No 102
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.77 E-value=64 Score=32.54 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=45.1
Q ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHh
Q 002247 621 DELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKE 693 (947)
Q Consensus 621 eeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e 693 (947)
++++.|.++|..+..+|..++..|..+|..++. ..+-+++..+++..||.-|++++...+.+
T Consensus 74 ~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~-----------a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 74 ATAQKIYDDYYTQTSALRQQLISKRYEYNALLT-----------ASSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------SSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888877777754421 12346777889999999999988877653
No 103
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=36.54 E-value=47 Score=29.84 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=56.8
Q ss_pred eeeeeccccCccc---ceE--EEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--
Q 002247 19 QFQCNQVPKLKKS---AVM--ISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~--vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
-+.|..+|..... --| |++.|...|....|| ++.-.+-+..|.. +..|. ...... ++..+|-|.-
T Consensus 22 v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT-~~~~~t~nP~wne----~f~f~--~~~~~~-~~~l~i~v~d~d 93 (137)
T 3rdl_A 22 VRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKT-KTIRSTLNPQWNE----SFTFK--LKPSDK-DRRLSVEIWDWD 93 (137)
T ss_dssp EEEEESCCCCSTTSCCCEEEEEEEECCTTCCCCEEC-CCCCSCSSCEEEE----EEEEE--CCGGGG-GCEEEEEEEECC
T ss_pred EEEeeCCCCCCCCCCCCeeEEEEEEcCCCCCeeecC-ceEcCCCCCCccc----EEEEE--cCchhc-CCEEEEEEEECC
Confidence 4567777764221 223 344444444444433 3333334445543 23332 111122 2345666652
Q ss_pred cCCccccccceecchhhhhcccCCcccccccccCCCCCeeee
Q 002247 92 GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVLHV 133 (947)
Q Consensus 92 GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvLHV 133 (947)
..++..+||++.|+|++.... +..--+||.....|-.-||
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~--~~~~W~~L~~~~~g~~~~~ 133 (137)
T 3rdl_A 94 RTTRNDFMGSLSFGVSELMKM--PASGWYKLLNQEEGEYYNV 133 (137)
T ss_dssp SSSCCEEEEEEEEEHHHHHHS--CEEEEEECBCHHHHTTCCC
T ss_pred CCCCCceEEEEEEeHHHhccC--ccCceEECcCccccccccC
Confidence 344678999999999999763 4667778877666655544
No 104
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=36.47 E-value=98 Score=27.71 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccccchhhhhHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHhhhcc
Q 002247 675 ALSTEIHMLRTEIEKLRKEQYNLSEHGKRRDDNKPKVSTGETDMLIQKWNRERDDLEKKFASAKQEAAKAHEELISMRSL 754 (947)
Q Consensus 675 ~~s~ei~~Lkaeie~L~~e~~~L~e~~~~~e~e~~k~s~~e~e~~l~~~~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~~ 754 (947)
.|...|.-+..+..+|-.+++++-..+ ...-.+....-.-|+..+..|..|++ .++...-.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~------------edfk~KyE~E~~~R~~~E~d~~~Lrk-------dvD~a~l~ 64 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDI------------MRLREKLQEEMLQREEAENTLQSFRQ-------DVDNASLA 64 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHT-------THHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHH
Confidence 455556666666666666666553333 12222233333334555544444443 33444445
Q ss_pred cchhHHHHhhHHHHHHHHH
Q 002247 755 KGENEMLIGNLQAEVENLK 773 (947)
Q Consensus 755 kdekE~~i~~L~~E~e~Lk 773 (947)
|-++|.-+..|+.|+.=||
T Consensus 65 r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 65 RLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666554
No 105
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.46 E-value=1.6e+02 Score=25.70 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002247 439 LEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 439 Le~kmeQLe~Dye~Lkq 455 (947)
+..+|.+|..|.+...+
T Consensus 4 ikkKm~~lk~e~d~a~~ 20 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALD 20 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 106
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.23 E-value=65 Score=26.81 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=18.8
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 421 KIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 421 KI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
.+.+|..+.+.+..++..|...|..|...+..|++
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666655555555555544
No 107
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=36.08 E-value=37 Score=26.22 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhHHHHHHHhHHHHHHHHHHHH
Q 002247 417 MLKQKIRDQGDEIQFFKKHAEDLEIYIKQLT 447 (947)
Q Consensus 417 ~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe 447 (947)
.|+.|+.....+|+..|+.+--|+++|-.|+
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 4788888888899999999999999987664
No 108
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.01 E-value=65 Score=27.13 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=23.1
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 420 QKIRDQGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 420 qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
+.|.+|..+.+.+..++..|...|.+|...+.-|++
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777777666666666654
No 109
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=34.58 E-value=3.9e+02 Score=27.35 Aligned_cols=145 Identities=16% Similarity=0.148 Sum_probs=71.7
Q ss_pred HHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCC-chhhHHHHHHHHHHhhHHHH----HHHhHHHHH
Q 002247 366 LAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNK-DKEVDMLKQKIRDQGDEIQF----FKKHAEDLE 440 (947)
Q Consensus 366 lavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~-~~E~~~L~qKI~dL~~Eie~----ykke~E~Le 440 (947)
.-+.+|+.-|..+...++.-. ...+...+..+++.|.. ..++..-...|..+...-.. ..-+...+.
T Consensus 11 ~~~~el~~Wl~e~~~~l~~~~--------~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~ 82 (326)
T 3kbt_A 11 LDADEAEAWIGEQELYVISDE--------IPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQII 82 (326)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC--------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCc--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Confidence 345566666666655444311 01233344455555542 33444445555544322111 113556777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 002247 441 IYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQV 520 (947)
Q Consensus 441 ~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~ 520 (947)
..+.+|..-|..|.+-=.+---+|++.- +-..+..+|..+..-|.+-+..+ . ...+..++..|..+..+.
T Consensus 83 ~~l~~l~~~w~~L~~~~~~R~~~Le~~l-~l~~f~~~~~~l~~Wl~~~e~~l-------~--~~~~g~d~~~v~~l~~~~ 152 (326)
T 3kbt_A 83 RLQGQVDKHYAGLKDVAEERKRKLENMY-HLFQLKRETDDLEQWISEKELVA-------S--SPEMGQDFDHVTLLRDKF 152 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------H--CCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------c--cccCCCCHHHHHHHHHHH
Confidence 8888888888888774444444555541 22335566666666655544322 1 122344444554444444
Q ss_pred HHHHHHHH
Q 002247 521 KELKRELD 528 (947)
Q Consensus 521 ~sLekELe 528 (947)
+.+..++.
T Consensus 153 ~~f~~el~ 160 (326)
T 3kbt_A 153 RDFARETG 160 (326)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 110
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=34.51 E-value=2.4e+02 Score=24.86 Aligned_cols=52 Identities=21% Similarity=0.512 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002247 485 IKELESQSERLEDKIKQQSEEYSES----LISINELECQVKELKRELDKQAQEFED 536 (947)
Q Consensus 485 I~eLe~q~e~LE~eLkeQ~~efSe~----l~tI~~Le~q~~sLekELe~Qaq~fe~ 536 (947)
|..++++...||..|.+-..+|... -..|..|++++..+..+|+.|.+.+..
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~ 58 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQD 58 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556665555555555443 356778899999999999998876643
No 111
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=34.42 E-value=83 Score=32.61 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHHhhHhHHHHhhHHHHHHHHHHHHHHHhh
Q 002247 740 EAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQNSLIEEKLEKDNLAKQVFQLKDELQKK 807 (947)
Q Consensus 740 Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~EkE~l~kqv~qLk~eL~kk 807 (947)
+-+..++-|..-.....|.-++++.|..++.+.-..|++|..+.++=.+|+.+|++.+-.|+|+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ 77 (206)
T 3oa7_A 10 EHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSER 77 (206)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGC
T ss_pred hHHHHHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhc
Confidence 44455555665555666777899999999999999999999999998888888888888888876543
No 112
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=34.37 E-value=1.2e+02 Score=26.86 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=43.4
Q ss_pred eeeeeccccCccc---ceE--EEeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--
Q 002247 19 QFQCNQVPKLKKS---AVM--ISLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST-- 91 (947)
Q Consensus 19 qFhAtQVP~~gwd---kL~--vSiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~-- 91 (947)
-+.|..+|..... --| |++.|...|....||. +.-.+-+..|.. +..|.- ...........+|-|.-
T Consensus 24 v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~-v~~~t~nP~wne----~f~f~~-~~~~~~~~~~l~~~V~d~d 97 (129)
T 2bwq_A 24 ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK-TVKKTLEPKWNQ----TFIYSP-VHRREFRERMLEITLWDQA 97 (129)
T ss_dssp EEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECC-CCSSBSSCEEEE----EEEECS-CCGGGGGGCEEEEEEEEC-
T ss_pred EEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecc-cccCCCCCcccc----EEEEcc-CCHHHhcCCeEEEEEEECC
Confidence 4567777764322 223 3455644344444332 222333344432 333320 11123345566777752
Q ss_pred cCC--ccccccceecchhhhhc
Q 002247 92 GSS--KSGFLGEASIDFADFAA 111 (947)
Q Consensus 92 GSS--kSgiLGEasINlAdYa~ 111 (947)
..+ +..+||++.|+|++...
T Consensus 98 ~~~~~~~~~lG~~~i~l~~l~~ 119 (129)
T 2bwq_A 98 RVREEESEFLGEILIELETALL 119 (129)
T ss_dssp ------CEEEEEEEEEGGGCCC
T ss_pred cCcCcCCceeEEEEEEccccCC
Confidence 222 37899999999998654
No 113
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.38 E-value=55 Score=34.93 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHHhhhHhHHHHHHHhhHHHhhHHHHHHHHHhhhc
Q 002247 248 SVEKLKNEIAVMMRQVELS---------ELELLSLRKQVAKESKRAQDQTRQIISLSSERDALTIECEQLRKQN 312 (947)
Q Consensus 248 ~iE~LK~E~~~L~R~ad~s---------~lELQtLRKQi~kEsKrgqdLs~Evs~Lk~ERD~LK~E~EqLKs~~ 312 (947)
.|+.|..|+..|.++...+ +-.+..|++++..-..+-.-|..++..++.|-..||.|+++|++--
T Consensus 25 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 25 ELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3555666666555444211 3346678888888888888899999999999999999999999754
No 114
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.39 E-value=87 Score=27.74 Aligned_cols=43 Identities=35% Similarity=0.379 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Q 002247 609 KAHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQKMYLEL 655 (947)
Q Consensus 609 k~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie~m~~el 655 (947)
...|+..|++..+||+. -+..+.+|-.+++.|...|..+-.+|
T Consensus 21 i~eLq~~L~~K~eELr~----kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQ----RDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888898888887 45567777777777777776666666
No 115
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.90 E-value=1.5e+02 Score=26.78 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=51.0
Q ss_pred eeeeeccccCcc--cceEE--EeeeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec---
Q 002247 19 QFQCNQVPKLKK--SAVMI--SLVPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--- 91 (947)
Q Consensus 19 qFhAtQVP~~gw--dkL~v--SiVp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--- 91 (947)
-++|..+|...+ .--|| ++.|...+....| +++.-.+-+..|..+ ..| +.....+..+..+|.|.-
T Consensus 30 v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~k-T~v~~~t~nP~wne~----f~f--~v~~~~l~~~~L~i~V~d~d~ 102 (142)
T 2dmg_A 30 VHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRK-THVSKKTLNPVFDQS----FDF--SVSLPEVQRRTLDVAVKNSGG 102 (142)
T ss_dssp EEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEE-CCCCCSCSSCEEEEE----EEE--CCCHHHHHHCEEEEEEEECCC
T ss_pred EEEeECCCCCCCCCCCeeEEEEEEcCCCCCCccc-CCccCCCCCCCcCce----EEE--EecHHHhCcCEEEEEEEECCC
Confidence 457777776422 22333 4444332223333 233223334455433 233 122233445667777762
Q ss_pred -cCCccccccceecchhhhhcccCCcccccccccC
Q 002247 92 -GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFA 125 (947)
Q Consensus 92 -GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~c 125 (947)
|+....+||.+.|+|++.... .+..--+||...
T Consensus 103 ~~~~~~~~iG~~~i~l~~~~~~-~~~~~W~~L~~~ 136 (142)
T 2dmg_A 103 FLSKDKGLLGKVLVALASEELA-KGWTQWYDLTED 136 (142)
T ss_dssp SSCCSCCCCEEEEEECCCSTTT-TCBCCBCCCBCS
T ss_pred ccccCCcEEEEEEEeccccccc-ccccceeeccCC
Confidence 332346999999999987653 255566777654
No 116
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=31.35 E-value=61 Score=29.56 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=29.4
Q ss_pred cccceeeeeeec--cCCccccccceecchhhhhcccCCcccccccc
Q 002247 80 IKEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLK 123 (947)
Q Consensus 80 ~~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk 123 (947)
+.....+|.|.- ..++..+||++.|+|+++.. ..+...-+||.
T Consensus 97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~ 141 (143)
T 3f04_A 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQ 141 (143)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCT-TSCEEEEEECB
T ss_pred cCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccC-CCCcceEEECc
Confidence 344667777763 33577899999999999854 34555566664
No 117
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.20 E-value=2.2e+02 Score=26.04 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 002247 428 EIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYS 507 (947)
Q Consensus 428 Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efS 507 (947)
.|..+++.+..|+..|.+++..|..= -.+. ...|..|++++..+.+++..|..+|-
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~e------------~~~~------------q~~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAKE------------KDNS------------RRMLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHH------------HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556678888999888888876431 1123 34678899999999999999999996
Q ss_pred hhhhhH-HHHHHHHH
Q 002247 508 ESLISI-NELECQVK 521 (947)
Q Consensus 508 e~l~tI-~~Le~q~~ 521 (947)
+ |-.| -.|+..|.
T Consensus 69 ~-LlnvKl~Le~EIa 82 (95)
T 3mov_A 69 Q-LLDVKLALDMEIS 82 (95)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH
Confidence 5 4444 24555443
No 118
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=31.13 E-value=1.6e+02 Score=29.84 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=38.2
Q ss_pred ccccceeeeeeec--cCCccccccceecchhhhhcccCCcccccccccC------CCCCeeeeeeeec
Q 002247 79 YIKEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKFA------NSGAVLHVTIEKM 138 (947)
Q Consensus 79 ~~~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~c------nsGtvLHVtIQ~L 138 (947)
.+......|.|.- ..++..+||++.|+|++... ..+...-+||... ..| -+++.+...
T Consensus 81 ~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~~G-~i~l~l~~~ 146 (284)
T 2r83_A 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQSAEKEEQEKLG-DICFSLRYV 146 (284)
T ss_dssp GCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCC-SSCEEEEEECBCCSSCCCCCCC-EEEEEEEEE
T ss_pred HhCcCEEEEEEEECCCCCCCceeEEEEEcchhccc-CCcceeEEEeeccccccccccc-cEEEEEEec
Confidence 3445667777762 34678899999999999865 3455666777543 234 456666544
No 119
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.09 E-value=2.8e+02 Score=24.60 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 002247 483 ATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKE 522 (947)
Q Consensus 483 ~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~s 522 (947)
..|..+++++..+-.++..|..+|-+-+..=-.|+..|..
T Consensus 35 ~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3566667777777777777777764444333344444433
No 120
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.74 E-value=3.1e+02 Score=24.95 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002247 484 TIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELK 524 (947)
Q Consensus 484 ~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLe 524 (947)
.|..++.+.+.|.++=..--.+|+.....+-.++.+..|++
T Consensus 40 el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 40 NLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455544444444455555555544444444443
No 121
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=30.51 E-value=4e+02 Score=26.17 Aligned_cols=89 Identities=24% Similarity=0.290 Sum_probs=58.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHhhhhhhh------hccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHh
Q 002247 600 TEANEQRMQKAHLEEMLQKANDELSLIKDQN------GVKLQELSDQLEQKDKQIQKMYLELDHSSSQLIDEHKSEAQKH 673 (947)
Q Consensus 600 ~Ea~eLR~qk~~LEe~Lqk~neeL~~~~~~~------e~kl~eL~~q~d~K~k~ie~m~~el~~kSkqle~~~~~~~~~~ 673 (947)
.|...||+.+..+--.|+||...|.-.--|- =-||-+|---++-|..+.+.+..-+-...|+|++.+-.-.++.
T Consensus 60 KEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~M 139 (167)
T 4gkw_A 60 KEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENM 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777776665422111 1255666666666777777777777778888887777666666
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 002247 674 EALSTEIHMLRTEIEKLRK 692 (947)
Q Consensus 674 ~~~s~ei~~Lkaeie~L~~ 692 (947)
..| +.|+-++|.++.
T Consensus 140 dSF----E~LkvENE~vke 154 (167)
T 4gkw_A 140 DSF----EKLSMENENLKE 154 (167)
T ss_dssp HHH----HHHHHHHHHHHH
T ss_pred HHH----HHHhhhhHhHHH
Confidence 665 556666666654
No 122
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.41 E-value=3.1e+02 Score=24.86 Aligned_cols=66 Identities=11% Similarity=0.299 Sum_probs=47.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHH
Q 002247 482 LATIKELESQSERLEDKIKQQSEEYSESLI---SINELECQVKELKRELDKQAQEFEDDIDAVTHAKTE 547 (947)
Q Consensus 482 ~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~---tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~E 547 (947)
|.-|.++...+..+...++.-..-|...|. ....+..++..+-.++.+.+...-.-|.+|.+.+.+
T Consensus 11 ~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 11 FEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655555555555554 346788889999999999999999999999877654
No 123
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=29.98 E-value=56 Score=38.15 Aligned_cols=93 Identities=18% Similarity=0.216 Sum_probs=15.2
Q ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHhhhhhhhH---HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhh
Q 002247 532 QEFEDDIDAVTHAKTEQEQRAIRAEEELRKTRWKNTVTA---ERLQDEFRRLSVDMASKFDENEKLAMKAMTEANEQRMQ 608 (947)
Q Consensus 532 q~fe~dl~a~~~~~~EqEqRai~aeeaLrk~r~~na~~~---e~LQ~e~~~LS~qm~s~~~enEk~~~~A~~Ea~eLR~q 608 (947)
..++..+.....+....++++..||++.++.+....-++ ++|..+++.....++-..++.++-. .||..|+.+
T Consensus 366 ~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~~~ 441 (575)
T 2i1j_A 366 LRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKD----SETRRLQEE 441 (575)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 344555555556666777777888888777776644444 3566677766666666666665543 477788888
Q ss_pred HHHHHHHHHHhHHHHhhhhh
Q 002247 609 KAHLEEMLQKANDELSLIKD 628 (947)
Q Consensus 609 k~~LEe~Lqk~neeL~~~~~ 628 (947)
.....+.+.+++++|-.+..
T Consensus 442 ~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 442 VEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 88888888888888866443
No 124
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=29.95 E-value=18 Score=34.69 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=27.3
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhhh-hhhh
Q 002247 666 HKSEAQKHEALSTEIHMLRTEIEKLRKEQYN-LSEH 700 (947)
Q Consensus 666 ~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~-L~e~ 700 (947)
.+.+.+++..|..||+-|.++|+.|+--+.. |+..
T Consensus 31 ~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske 66 (123)
T 2lf0_A 31 LVEAADKYAELEKEKATLEAEIARLREVHSQKLSKE 66 (123)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4557788999999999999999999875543 4433
No 125
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=29.33 E-value=1.3e+02 Score=27.62 Aligned_cols=46 Identities=26% Similarity=0.442 Sum_probs=31.6
Q ss_pred cccccceeeeeeec--cCCccccccceecchhhhhcccCCccccccccc
Q 002247 78 GYIKEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKF 124 (947)
Q Consensus 78 ~~~~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~ 124 (947)
..+..+...|-|.- ..++..+||++.|+|+++... .+..--+||..
T Consensus 87 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~~W~~L~~ 134 (148)
T 3fdw_A 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLD-KKLDHCLPLHG 134 (148)
T ss_dssp TTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHH-CCSEEEEECBC
T ss_pred hHhCceEEEEEEEECCCCcCCcEEEEEEEEccccccc-CCccceEECcC
Confidence 34455667777752 334778999999999998653 35556677765
No 126
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.83 E-value=59 Score=28.79 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=14.7
Q ss_pred cchhhhhHhhhhhHHHHHHHHHHhHHHHH
Q 002247 713 TGETDMLIQKWNRERDDLEKKFASAKQEA 741 (947)
Q Consensus 713 ~~e~e~~l~~~~~er~~L~~~ia~lk~Ea 741 (947)
+.+++..|+..+.|+.+....|..+.++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444444433
No 127
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.66 E-value=3.2e+02 Score=25.40 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCCchhhHHHHHHHHHHh
Q 002247 347 SAHLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQG 426 (947)
Q Consensus 347 NaNL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~~~E~~~L~qKI~dL~ 426 (947)
|++..-||..++.++.|+.....+|+.-+++-+..+.. |.......+..|+.-|..=+
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~----------------------k~~eq~~~le~lk~eL~~~~ 67 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQR----------------------KTQEQLEVLESLKQELATSQ 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 002247 427 DEIQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLEK 466 (947)
Q Consensus 427 ~Eie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq 466 (947)
+|+...+...+.+..-=.+|...+..+..|.-.+.-.+.+
T Consensus 68 ~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~~~~~ 107 (107)
T 2no2_A 68 RELQVLQGSLETSAQSEANWAAEFAELEKERDSLVSGAAH 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 128
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.43 E-value=2.8e+02 Score=23.65 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHHHHhhhhhhhhccHHHHHHHHHHHHHHHH
Q 002247 610 AHLEEMLQKANDELSLIKDQNGVKLQELSDQLEQKDKQIQ 649 (947)
Q Consensus 610 ~~LEe~Lqk~neeL~~~~~~~e~kl~eL~~q~d~K~k~ie 649 (947)
++-|++.++-..|+.. -|..|+++|......-...+.
T Consensus 16 aQYE~ia~knr~EaE~---~y~~k~eel~~~~~~~~~~l~ 52 (77)
T 3trt_A 16 QQYESVAAKNLQEAEE---WYKSKFADLSEAANRNNDALR 52 (77)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHhhHHHHH
Confidence 4566777777666654 577777777776666555553
No 129
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.40 E-value=1.6e+02 Score=27.55 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhcccchhHHHHhhHHHHHHHHHHHHHHHH
Q 002247 726 ERDDLEKKFASAKQEAAKAHEELISMRSLKGENEMLIGNLQAEVENLKVQQNKLQ 780 (947)
Q Consensus 726 er~~L~~~ia~lk~Ea~~~~~eL~~~k~~kdekE~~i~~L~~E~e~Lk~q~~~Lk 780 (947)
-+++|..++-.|.+-...+.+|-++++.....-...++.|..||+-|+++-..|.
T Consensus 31 SKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3578888888899999999888888888777778889999999999988776664
No 130
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=27.37 E-value=3.1e+02 Score=26.88 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=43.3
Q ss_pred hHHHhhhhhh-ccccccccccc-cccCCCCC--CchHHHHHHHHHHHHHhHhHHHHHHHHHhhhhccc
Q 002247 858 VDEYRHMIRK-GETCSEKGVTA-LASHSSDE--GNFTEVLMEVSLLKEKNKRMETELKEMQERYSEIS 921 (947)
Q Consensus 858 ~eke~~~~~~-~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~lk~r~~~~e~el~~m~~rys~~s 921 (947)
.++.+..|+. .+-...+...+ +.++..-+ ..++++-..+-++|.....+-..|+|.+.|+.+|-
T Consensus 57 Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE 124 (136)
T 3ter_A 57 CFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIE 124 (136)
T ss_dssp HHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554433 33333333333 55554444 77899999999999999999999999999998874
No 131
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=27.35 E-value=2e+02 Score=26.72 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 002247 679 EIHMLRTEIEKLR 691 (947)
Q Consensus 679 ei~~Lkaeie~L~ 691 (947)
.|+.||.+|..+.
T Consensus 24 ~id~lke~~~q~~ 36 (94)
T 3jsv_C 24 LIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 132
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.32 E-value=60 Score=24.28 Aligned_cols=25 Identities=40% Similarity=0.414 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhh
Q 002247 673 HEALSTEIHMLRTEIEKLRKEQYNL 697 (947)
Q Consensus 673 ~~~~s~ei~~Lkaeie~L~~e~~~L 697 (947)
..++.+||--||.+|.-|+-|+..|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777666554
No 133
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.12 E-value=4.1e+02 Score=25.16 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHH
Q 002247 484 TIKELESQSERLEDKIKQQSEEYSESL----ISINELECQVKELKRELDKQAQEFEDDIDAVTHAKTEQEQRAIRAEEEL 559 (947)
Q Consensus 484 ~I~eLe~q~e~LE~eLkeQ~~efSe~l----~tI~~Le~q~~sLekELe~Qaq~fe~dl~a~~~~~~EqEqRai~aeeaL 559 (947)
.+.+|.+.+++|..+...-...|-.+. .+|+.|+..+..|...-. .+...+..|.++|-..|+.+--+-.+|
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~----~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKE----QLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 456777777777777777666665554 467777777777654433 455566777777777777665555566
Q ss_pred HHHhhhhhhhHHH
Q 002247 560 RKTRWKNTVTAER 572 (947)
Q Consensus 560 rk~r~~na~~~e~ 572 (947)
--+--++..+.|+
T Consensus 80 eD~E~k~n~aiEr 92 (111)
T 2v66_B 80 EDFEQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555554
No 134
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.75 E-value=1.3e+02 Score=34.78 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhHhHHHH---hhHHHHHHHHHHHHHHHhhHHHHhhhhhhccccC
Q 002247 760 MLIGNLQAEVENLKVQQNKLQNSLIEEKL---EKDNLAKQVFQLKDELQKKKEEINRTGKGLKKYG 822 (947)
Q Consensus 760 ~~i~~L~~E~e~Lk~q~~~Lk~sls~~~~---EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~~ 822 (947)
..-+.++.+++.|+++.|.+...+-.-.. +.+.|.+++.+|+.+++..|+.+..++.+|..-.
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666555543221 2345666677777777777766666666665443
No 135
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.39 E-value=86 Score=35.16 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=33.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhHhH-HHHhhHHHHHHHHHHHHHHHhhHHHHhhhhhhcccc
Q 002247 761 LIGNLQAEVENLKVQQNKLQNSLIE-EKLEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKY 821 (947)
Q Consensus 761 ~i~~L~~E~e~Lk~q~~~Lk~sls~-~~~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~ 821 (947)
.-+.++.+++.|+++.|.+-..+-. ...+.+.|.+++..|+.+++..++.+..++.+|..-
T Consensus 36 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 36 EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655555442 112234556666666666666666666666555543
No 136
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.81 E-value=1.8e+02 Score=32.77 Aligned_cols=30 Identities=7% Similarity=0.231 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 002247 724 NRERDDLEKKFASAKQEAAKAHEELISMRS 753 (947)
Q Consensus 724 ~~er~~L~~~ia~lk~Ea~~~~~eL~~~k~ 753 (947)
..--.+|+..|.-||.=|..-...|..|+.
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~ 141 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQK 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334456777777777777666555555543
No 137
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.32 E-value=1.1e+02 Score=27.68 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=16.3
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002247 425 QGDEIQFFKKHAEDLEIYIKQLTEDCQVLEQ 455 (947)
Q Consensus 425 L~~Eie~ykke~E~Le~kmeQLe~Dye~Lkq 455 (947)
+..+.+.+.+++..|..+|++|..+...|++
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555566666655555555543
No 138
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=25.17 E-value=2.7e+02 Score=26.21 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=51.1
Q ss_pred HhhhhhhhhchhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 002247 469 QQESMKSRECIESLATIKELESQSERLEDKIKQQSEEYSESLISINELECQVKELKRELDK 529 (947)
Q Consensus 469 ~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLkeQ~~efSe~l~tI~~Le~q~~sLekELe~ 529 (947)
..+-.+-||=|++.|-|.=|+-.++-+++.+-+..++|-+.+..+.-+......|..++..
T Consensus 16 VsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566899999999999999999999999999999999998888888877777776654
No 139
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.93 E-value=96 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=10.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 002247 727 RDDLEKKFASAKQEAAKAHEELI 749 (947)
Q Consensus 727 r~~L~~~ia~lk~Ea~~~~~eL~ 749 (947)
+.-|..+|+-||+|+..++=|+.
T Consensus 4 iaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444443
No 140
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=24.59 E-value=1.4e+02 Score=28.01 Aligned_cols=104 Identities=11% Similarity=0.131 Sum_probs=52.6
Q ss_pred eeeeeccccCc---ccceEEEe-eeCCCCCccccccccccccCccccCccchhhheecccCCccccccceeeeeeec--c
Q 002247 19 QFQCNQVPKLK---KSAVMISL-VPDDVGKPTFKLEKVPVQNGTCLWENPIYVTVKLIREPKTGYIKEKIYHFIVST--G 92 (947)
Q Consensus 19 qFhAtQVP~~g---wdkL~vSi-Vp~DtGK~TaKs~KA~VrnG~C~W~dpIyEtvkl~qD~~s~~~~e~iykfvVs~--G 92 (947)
-++|..+|... ..--||.| +..+.|+...+.+++.-.+-+..|.. +..| +.....+..+...|-|.- .
T Consensus 43 v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne----~f~f--~v~~~~l~~~~L~i~V~d~d~ 116 (166)
T 2cm5_A 43 IIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE----EFFY--DIKHSDLAKKSLDISVWDYDI 116 (166)
T ss_dssp EEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEE----EEEE--ECCGGGGGGCEEEEEEEECCS
T ss_pred EEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccc----eEEE--EcchHhcCCCEEEEEEEECCC
Confidence 45677777642 22234333 22233433333333333333344433 3233 122234456677777763 4
Q ss_pred CCccccccceecchhhhhcccCCcccccccccCCCCCee
Q 002247 93 SSKSGFLGEASIDFADFAAETEPLTLSLPLKFANSGAVL 131 (947)
Q Consensus 93 SSkSgiLGEasINlAdYa~a~kp~tVSLPLk~cnsGtvL 131 (947)
.++..+||.+.|++.+... +...-+||.....+.+.
T Consensus 117 ~~~~~~iG~~~i~l~~~~~---~~~~W~~l~~~~~~~~~ 152 (166)
T 2cm5_A 117 GKSNDYIGGCQLGISAKGE---RLKHWYECLKNKDKKIE 152 (166)
T ss_dssp SSCCEEEEEEEEETTCCHH---HHHHHHHHHHCTTCCEE
T ss_pred CCCCcEEEeEEEecccCCc---hhHHHHHHHhCCCCcce
Confidence 4577899999999987543 33445666665555443
No 141
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.49 E-value=3.5e+02 Score=31.28 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=61.6
Q ss_pred hhHHHHHHhhhhhHHHHHHHhhHHHHHHhhhhhhccchhhhhhhhhhhhhHHHHHHHHhhcCCchhhHHHHHHHHHHhhH
Q 002247 349 HLRLQLEKTQDSNAELILAVKDLNEMLEQKNMEISSLSSKLEESKLVREDQLALEALAKERNKDKEVDMLKQKIRDQGDE 428 (947)
Q Consensus 349 NL~lQLqKTQESN~ELvlavqDLEemLEqk~~EIs~ls~~~~e~~n~d~~q~~le~Lvk~~~~~~E~~~L~qKI~dL~~E 428 (947)
.|+-.|...|.++...-..+..+=+++.+.-..+.+..+.+.+ + .++| +.-+..|+.||.+...=
T Consensus 69 kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e------~---S~eL------e~ri~yIK~kVd~qi~~ 133 (491)
T 1m1j_A 69 NIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGH------V---STEL------RRRIVTLKQRVATQVNR 133 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H---HHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHH------H---HHHH------HHHHHHHHHHHHHHHHH
Confidence 3555666667777777778888877777655444442222211 1 1122 34567889999988888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 002247 429 IQFFKKHAEDLEIYIKQLTEDCQV 452 (947)
Q Consensus 429 ie~ykke~E~Le~kmeQLe~Dye~ 452 (947)
|-.++.-.+.+..+|+.||-|..+
T Consensus 134 IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 134 IKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999654
No 142
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=24.09 E-value=1e+02 Score=28.61 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=29.6
Q ss_pred cccceeeeeeec--cCCccccccceecchhhhhcccCCccccccccc
Q 002247 80 IKEKIYHFIVST--GSSKSGFLGEASIDFADFAAETEPLTLSLPLKF 124 (947)
Q Consensus 80 ~~e~iykfvVs~--GSSkSgiLGEasINlAdYa~a~kp~tVSLPLk~ 124 (947)
+.....+|.|.- ..++..+||++.|+|+++.. ..+...-+||..
T Consensus 105 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~~ 150 (152)
T 1rsy_A 105 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQS 150 (152)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCC-SSCEEEEEECBC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEchhccC-CCCcceEEECCC
Confidence 344666777762 34578899999999998754 235555566654
No 143
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.78 E-value=76 Score=27.72 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHH
Q 002247 413 KEVDMLKQKIRDQGDEIQFFKKHAEDLEIYIKQLTEDC 450 (947)
Q Consensus 413 ~E~~~L~qKI~dL~~Eie~ykke~E~Le~kmeQLe~Dy 450 (947)
..+..|+.++.+|..+......+++.|..+|..|....
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444433444444444444444433
No 144
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.67 E-value=1.1e+02 Score=25.32 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 002247 246 DGSVEKLKNEIAVMMRQVELSELELLSLRKQV 277 (947)
Q Consensus 246 e~~iE~LK~E~~~L~R~ad~s~lELQtLRKQi 277 (947)
..+++.||.|..-|......+..+++.|+.++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999888777777777777766666654
No 145
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.42 E-value=1.6e+02 Score=33.97 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHhhhhhhcccc
Q 002247 790 KDNLAKQVFQLKDELQKKKEEINRTGKGLKKY 821 (947)
Q Consensus 790 kE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~ 821 (947)
.+.|..++..|+.+++..++.+..++.+|..-
T Consensus 118 ~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 118 YQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666544
No 146
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.38 E-value=1.8e+02 Score=27.20 Aligned_cols=39 Identities=26% Similarity=0.168 Sum_probs=27.6
Q ss_pred hhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 002247 660 SQLIDEHKSEAQKHEALSTEIHMLRTEIEKLRKEQYNLS 698 (947)
Q Consensus 660 kqle~~~~~~~~~~~~~s~ei~~Lkaeie~L~~e~~~L~ 698 (947)
+.+.++-+.-....++|-.||+.|++++..|..|+.-+-
T Consensus 54 ~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 54 NRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444567778888889999999988888766553
No 147
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=23.37 E-value=1.3e+02 Score=34.18 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhHhHHH---HhhHHHHHHHHHHHHHHHhhHHHHhhhhhhcccc
Q 002247 761 LIGNLQAEVENLKVQQNKLQNSLIEEK---LEKDNLAKQVFQLKDELQKKKEEINRTGKGLKKY 821 (947)
Q Consensus 761 ~i~~L~~E~e~Lk~q~~~Lk~sls~~~---~EkE~l~kqv~qLk~eL~kkE~~~~~~ek~lk~~ 821 (947)
.-+.++.+++.|+++.|.+-..+-.-. .+.+.|..++..|+.+++..++.+..++.++..-
T Consensus 39 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 39 EWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444211 1234566666666666666666666666665544
No 148
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=21.74 E-value=7.3e+02 Score=26.26 Aligned_cols=31 Identities=3% Similarity=-0.036 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Q 002247 414 EVDMLKQKIRDQGDEIQFFKKHAEDLEIYIK 444 (947)
Q Consensus 414 E~~~L~qKI~dL~~Eie~ykke~E~Le~kme 444 (947)
+.+.+..=...+..+.+..-.....+...|.
T Consensus 82 e~gtl~~aw~~l~~e~e~~a~~H~~la~~L~ 112 (350)
T 3aco_A 82 QYGTVEKAWMAFMSEAERVSELHLEVKASLM 112 (350)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665555445555554443
No 149
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=21.32 E-value=2e+02 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002247 433 KKHAEDLEIYIKQLTEDCQVLEQENQCLT 461 (947)
Q Consensus 433 kke~E~Le~kmeQLe~Dye~LkqEN~dls 461 (947)
|.+||.+....++|..+...|...|..|.
T Consensus 60 RadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 60 RHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999888887766554
No 150
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.15 E-value=1.6e+02 Score=24.28 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=29.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 002247 429 IQFFKKHAEDLEIYIKQLTEDCQVLEQENQCLTSKLE 465 (947)
Q Consensus 429 ie~ykke~E~Le~kmeQLe~Dye~LkqEN~dls~KLe 465 (947)
|--||.-++.|.+++.+|+.-|..+.|||+-|--=|+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3345667889999999999999999999987654343
No 151
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.68 E-value=1.6e+02 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHh
Q 002247 429 IQFFKKHAEDLEIYIKQLTEDCQVLE 454 (947)
Q Consensus 429 ie~ykke~E~Le~kmeQLe~Dye~Lk 454 (947)
.+.+.+++..|..+|++|...+..|+
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555544444
No 152
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.54 E-value=2.2e+02 Score=25.51 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhhhhhhhhchhhhHhHHHHHHHHHHHHHHHH
Q 002247 435 HAEDLEIYIKQLTEDCQVLEQENQCLTSKLEKIQQQESMKSRECIESLATIKELESQSERLEDKIK 500 (947)
Q Consensus 435 e~E~Le~kmeQLe~Dye~LkqEN~dls~KLeq~q~Q~~k~q~EcSs~~~~I~eLe~q~e~LE~eLk 500 (947)
-+++|=.++++|++++++|+.| +-++.-+..-++..+.-||++|+
T Consensus 31 vk~DLI~rvdELt~E~e~l~~E---------------------l~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 31 VKNDLIAKVDELTCEKDVLQGE---------------------LEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777888888888777663 33444455555556666666654
Done!