Query 002250
Match_columns 947
No_of_seqs 897 out of 6501
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.8E-76 2.7E-80 722.2 36.1 555 1-566 18-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.9E-60 6.6E-65 585.4 31.5 488 36-531 178-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-57 7.6E-62 553.3 41.4 524 36-562 25-634 (680)
4 3t6q_A CD180 antigen; protein- 100.0 9E-57 3.1E-61 540.5 34.5 492 62-558 34-567 (606)
5 3j0a_A TOLL-like receptor 5; m 100.0 5.8E-56 2E-60 551.2 37.3 521 25-558 14-567 (844)
6 4eco_A Uncharacterized protein 100.0 3.1E-57 1.1E-61 544.0 21.0 474 15-532 57-603 (636)
7 3vq2_A TLR4, TOLL-like recepto 100.0 9.6E-55 3.3E-59 522.8 33.1 510 37-559 33-566 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 7E-55 2.4E-59 524.0 29.2 478 61-551 32-534 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-53 1.5E-57 515.5 39.4 495 36-533 49-626 (680)
10 4ecn_A Leucine-rich repeat pro 100.0 7.4E-54 2.5E-58 521.7 25.4 506 2-555 276-870 (876)
11 3t6q_A CD180 antigen; protein- 100.0 9.6E-52 3.3E-56 496.8 33.0 463 86-551 34-536 (606)
12 4gt4_A Tyrosine-protein kinase 100.0 7.6E-53 2.6E-57 454.2 15.4 259 629-921 26-305 (308)
13 4aoj_A High affinity nerve gro 100.0 1.2E-52 3.9E-57 457.2 14.3 264 629-927 41-324 (329)
14 4asz_A BDNF/NT-3 growth factor 100.0 4.4E-53 1.5E-57 454.0 10.0 258 629-921 13-288 (299)
15 3j0a_A TOLL-like receptor 5; m 100.0 6.7E-50 2.3E-54 496.7 39.5 484 36-533 48-564 (844)
16 3omv_A RAF proto-oncogene seri 100.0 1E-51 3.4E-56 443.1 19.0 261 629-921 36-299 (307)
17 2z63_A TOLL-like receptor 4, v 100.0 1.8E-50 6.3E-55 482.1 30.0 463 62-535 29-537 (570)
18 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-51 1.8E-55 484.4 23.8 484 24-533 3-514 (549)
19 2z63_A TOLL-like receptor 4, v 100.0 3E-49 1E-53 471.7 30.2 464 85-558 28-538 (570)
20 4b9d_A Serine/threonine-protei 100.0 1E-50 3.5E-55 441.1 13.1 253 628-915 23-276 (350)
21 4aw0_A HPDK1, 3-phosphoinositi 100.0 9.4E-50 3.2E-54 426.3 17.1 251 629-914 32-283 (311)
22 4g3f_A NF-kappa-beta-inducing 100.0 8.3E-50 2.8E-54 432.1 15.6 253 628-920 57-314 (336)
23 4fih_A Serine/threonine-protei 100.0 5.7E-49 1.9E-53 426.8 21.3 250 629-916 74-324 (346)
24 3hmm_A TGF-beta receptor type- 100.0 4.1E-49 1.4E-53 426.6 19.4 270 628-925 2-300 (303)
25 4ase_A Vascular endothelial gr 100.0 8.6E-50 2.9E-54 438.0 11.9 260 628-920 63-345 (353)
26 3fpq_A Serine/threonine-protei 100.0 1.3E-48 4.4E-53 416.0 19.2 247 632-916 29-283 (290)
27 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-48 1.1E-52 460.3 24.1 475 66-555 10-514 (549)
28 4eco_A Uncharacterized protein 100.0 9.9E-49 3.4E-53 470.1 18.9 452 61-554 81-603 (636)
29 3hyh_A Carbon catabolite-derep 100.0 2.1E-48 7.2E-53 410.4 18.8 250 628-916 12-263 (275)
30 4fie_A Serine/threonine-protei 100.0 8.8E-48 3E-52 427.7 22.0 250 629-916 151-401 (423)
31 2z7x_B TOLL-like receptor 1, v 100.0 4.5E-48 1.6E-52 455.7 18.8 454 39-533 3-485 (520)
32 2z7x_B TOLL-like receptor 1, v 100.0 8.5E-48 2.9E-52 453.3 20.7 434 36-510 21-485 (520)
33 3ubd_A Ribosomal protein S6 ki 100.0 1.3E-48 4.5E-53 417.8 11.4 244 629-910 24-271 (304)
34 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-46 7.1E-51 453.3 31.0 530 10-558 8-587 (635)
35 4g31_A Eukaryotic translation 100.0 2E-47 6.7E-52 411.1 14.6 252 628-915 4-279 (299)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-45 1.1E-49 435.0 21.6 453 39-533 34-514 (562)
37 4ecn_A Leucine-rich repeat pro 100.0 1.8E-44 6.3E-49 439.2 21.7 397 63-506 425-864 (876)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.7E-44 1.3E-48 425.9 20.6 461 59-558 29-517 (562)
39 4b99_A Mitogen-activated prote 100.0 7.3E-44 2.5E-48 398.0 19.2 265 629-916 54-345 (398)
40 4f9c_A Cell division cycle 7-r 100.0 1.1E-43 3.8E-48 392.6 19.6 200 626-852 18-250 (361)
41 3v5w_A G-protein coupled recep 100.0 5.5E-43 1.9E-47 405.8 18.9 252 628-915 188-449 (689)
42 1jl5_A Outer protein YOPM; leu 100.0 3.7E-42 1.3E-46 394.8 23.0 404 59-535 9-417 (454)
43 2qkw_B Protein kinase; three-h 100.0 6E-42 2.1E-46 376.8 23.8 278 625-923 35-316 (321)
44 3uto_A Twitchin; kinase, muscl 100.0 2.3E-42 8E-47 405.4 20.3 256 625-916 153-411 (573)
45 3v47_A TOLL-like receptor 5B a 100.0 5.7E-41 1.9E-45 388.3 28.7 363 158-534 30-413 (455)
46 3uim_A Brassinosteroid insensi 100.0 1.2E-41 4.1E-46 375.5 21.7 286 618-921 18-310 (326)
47 3v47_A TOLL-like receptor 5B a 100.0 2.1E-41 7.3E-46 391.8 24.8 385 65-511 14-413 (455)
48 1jl5_A Outer protein YOPM; leu 100.0 8.1E-41 2.8E-45 383.7 27.2 409 36-536 11-436 (454)
49 2psq_A Fibroblast growth facto 100.0 2.4E-41 8.2E-46 378.7 17.7 260 628-921 80-363 (370)
50 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-40 1.2E-44 378.7 27.7 371 55-501 36-407 (457)
51 2nru_A Interleukin-1 receptor- 100.0 3.6E-40 1.2E-44 360.4 24.8 279 625-922 21-306 (307)
52 3soc_A Activin receptor type-2 100.0 3.2E-41 1.1E-45 370.9 16.3 262 629-921 24-317 (322)
53 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-39 3.9E-44 394.2 30.8 492 29-531 35-582 (635)
54 3p86_A Serine/threonine-protei 100.0 1.4E-40 4.8E-45 363.1 18.5 261 628-923 36-299 (309)
55 3zgw_A Maternal embryonic leuc 100.0 9.8E-41 3.3E-45 368.6 17.4 254 625-916 6-261 (347)
56 3fxz_A Serine/threonine-protei 100.0 4.7E-40 1.6E-44 357.0 22.3 251 628-916 19-270 (297)
57 3s95_A LIMK-1, LIM domain kina 100.0 1.3E-40 4.3E-45 364.4 16.8 255 629-921 10-281 (310)
58 3cbl_A C-FES, proto-oncogene t 100.0 3E-41 1E-45 379.3 11.6 258 629-921 114-373 (377)
59 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.9E-40 6.5E-45 354.9 17.0 257 629-923 8-265 (268)
60 3tki_A Serine/threonine-protei 100.0 2.2E-40 7.7E-45 363.9 16.9 255 628-916 6-262 (323)
61 3fe3_A MAP/microtubule affinit 100.0 3.2E-40 1.1E-44 362.6 18.2 250 628-916 14-265 (328)
62 3kul_A Ephrin type-A receptor 100.0 1.5E-40 5.2E-45 365.7 15.1 261 628-923 48-314 (325)
63 1ogq_A PGIP-2, polygalacturona 100.0 6.1E-40 2.1E-44 358.5 19.4 283 2-315 13-306 (313)
64 4hcu_A Tyrosine-protein kinase 100.0 1.4E-40 4.7E-45 356.2 13.7 256 629-922 10-266 (269)
65 2yab_A Death-associated protei 100.0 2.2E-39 7.6E-44 360.1 23.1 260 625-915 8-272 (361)
66 3lb7_A RAF proto-oncogene seri 100.0 6.4E-40 2.2E-44 357.6 18.0 264 628-923 35-301 (307)
67 3poz_A Epidermal growth factor 100.0 1.9E-40 6.6E-45 365.5 13.8 263 629-927 15-283 (327)
68 4euu_A Serine/threonine-protei 100.0 4.2E-39 1.4E-43 353.8 24.4 270 629-921 9-308 (319)
69 1luf_A Muscle-specific tyrosin 100.0 1.9E-40 6.4E-45 368.7 13.8 263 628-924 46-337 (343)
70 2qol_A Ephrin receptor; recept 100.0 1.1E-40 3.9E-45 373.4 12.1 261 628-923 44-310 (373)
71 4eqm_A Protein kinase; transfe 100.0 8.4E-40 2.9E-44 354.6 18.3 265 628-923 10-276 (294)
72 3l9p_A Anaplastic lymphoma kin 100.0 1.2E-40 4.2E-45 372.7 11.9 263 628-924 70-347 (367)
73 1qcf_A Haematopoetic cell kina 100.0 1.8E-40 6.2E-45 382.2 13.2 257 629-923 188-445 (454)
74 3q4u_A Activin receptor type-1 100.0 1.8E-39 6.3E-44 353.7 20.2 264 627-920 6-300 (301)
75 1tki_A Titin; serine kinase, m 100.0 8.7E-40 3E-44 358.6 17.7 253 627-916 3-258 (321)
76 1o6l_A RAC-beta serine/threoni 100.0 2.9E-39 9.9E-44 355.9 21.7 252 628-916 4-261 (337)
77 3kex_A Receptor tyrosine-prote 100.0 3.4E-40 1.2E-44 363.3 14.2 265 629-929 13-283 (325)
78 3tt0_A Basic fibroblast growth 100.0 4.7E-40 1.6E-44 370.4 15.4 260 628-921 68-351 (382)
79 1k9a_A Carboxyl-terminal SRC k 100.0 1.1E-39 3.7E-44 375.0 18.7 251 629-922 193-445 (450)
80 1opk_A P150, C-ABL, proto-onco 100.0 6.5E-40 2.2E-44 381.1 16.7 258 629-923 220-479 (495)
81 3vhe_A Vascular endothelial gr 100.0 1.6E-40 5.4E-45 371.8 10.9 261 628-921 21-354 (359)
82 3qup_A Tyrosine-protein kinase 100.0 2.4E-40 8.3E-45 364.5 12.2 282 629-943 23-321 (323)
83 2ivs_A Proto-oncogene tyrosine 100.0 5.3E-40 1.8E-44 360.2 14.4 260 628-921 22-310 (314)
84 4aw2_A Serine/threonine-protei 100.0 1.1E-39 3.6E-44 370.7 17.2 259 628-916 73-339 (437)
85 2y0a_A Death-associated protei 100.0 6.6E-39 2.3E-43 352.8 23.1 261 625-916 7-272 (326)
86 3gen_A Tyrosine-protein kinase 100.0 5.7E-40 2E-44 354.2 14.1 256 628-921 23-279 (283)
87 1rjb_A FL cytokine receptor; k 100.0 1.1E-39 3.9E-44 362.5 16.6 268 628-928 44-340 (344)
88 3niz_A Rhodanese family protei 100.0 2.4E-39 8.1E-44 354.0 18.9 268 625-915 17-300 (311)
89 3h4j_B AMPK kdaid, SNF1-like p 100.0 1.9E-39 6.4E-44 357.0 17.9 250 628-916 8-259 (336)
90 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 6.4E-40 2.2E-44 377.2 14.0 257 629-923 184-441 (452)
91 3ugc_A Tyrosine-protein kinase 100.0 1.3E-39 4.5E-44 353.7 15.5 264 628-921 9-290 (295)
92 3c0i_A Peripheral plasma membr 100.0 1.1E-38 3.9E-43 354.6 23.4 259 627-915 22-286 (351)
93 1fot_A TPK1 delta, CAMP-depend 100.0 9.2E-39 3.1E-43 349.4 22.1 248 628-915 5-258 (318)
94 3qd2_B Eukaryotic translation 100.0 2.6E-39 8.9E-44 357.7 17.7 254 627-916 4-326 (332)
95 3kmu_A ILK, integrin-linked ki 100.0 3.1E-39 1.1E-43 346.0 17.4 255 628-922 9-270 (271)
96 2izr_A Casein kinase I isoform 100.0 3.5E-39 1.2E-43 356.1 18.1 259 629-920 9-279 (330)
97 2bdw_A Hypothetical protein K1 100.0 7.3E-39 2.5E-43 357.2 20.7 257 625-916 25-285 (362)
98 2c30_A Serine/threonine-protei 100.0 1.1E-38 3.8E-43 350.1 21.8 249 630-916 46-295 (321)
99 3mdy_A Bone morphogenetic prot 100.0 1.7E-38 5.9E-43 352.0 23.3 269 625-926 33-335 (337)
100 3soa_A Calcium/calmodulin-depe 100.0 1.2E-38 4E-43 363.7 22.4 258 625-916 7-268 (444)
101 4f0f_A Serine/threonine-protei 100.0 1.4E-38 4.6E-43 344.2 21.8 259 629-920 19-287 (287)
102 1t46_A HOMO sapiens V-KIT hard 100.0 2.8E-39 9.5E-44 354.4 16.5 261 628-921 22-306 (313)
103 1p4o_A Insulin-like growth fac 100.0 8.4E-40 2.9E-44 360.0 12.3 263 628-924 24-301 (322)
104 1o6v_A Internalin A; bacterial 100.0 6.6E-38 2.3E-42 362.9 28.7 346 84-508 45-390 (466)
105 3txo_A PKC-L, NPKC-ETA, protei 100.0 2.5E-39 8.4E-44 358.9 16.0 251 628-915 22-280 (353)
106 1mp8_A Focal adhesion kinase 1 100.0 1.4E-39 4.9E-44 350.6 13.7 256 628-920 14-274 (281)
107 3gni_B Strad alpha; kinase fol 100.0 6.6E-39 2.3E-43 362.5 19.6 276 628-922 24-342 (389)
108 4dc2_A Protein kinase C IOTA t 100.0 4.5E-39 1.5E-43 360.7 18.0 252 628-910 51-307 (396)
109 1csn_A Casein kinase-1; phosph 100.0 9.2E-39 3.1E-43 347.6 19.9 261 628-921 9-282 (298)
110 3dtc_A Mitogen-activated prote 100.0 5.4E-39 1.8E-43 344.3 17.6 254 629-920 7-271 (271)
111 2eva_A TAK1 kinase - TAB1 chim 100.0 6.6E-39 2.2E-43 349.9 18.5 253 629-921 8-262 (307)
112 3bz5_A Internalin-J, INLJ; leu 100.0 5.1E-38 1.7E-42 360.8 26.8 355 36-467 42-396 (457)
113 2pvf_A Fibroblast growth facto 100.0 2.1E-39 7.1E-44 358.6 14.5 261 628-922 34-318 (334)
114 3o0g_A Cell division protein k 100.0 7.5E-39 2.6E-43 347.1 18.2 266 629-916 2-283 (292)
115 3og7_A AKAP9-BRAF fusion prote 100.0 2.9E-39 9.8E-44 349.8 14.8 263 628-922 23-288 (289)
116 4fr4_A YANK1, serine/threonine 100.0 1.6E-38 5.6E-43 355.0 21.3 253 628-915 14-271 (384)
117 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.3E-38 4.6E-43 352.8 20.3 248 628-915 40-293 (350)
118 1qpc_A LCK kinase; alpha beta 100.0 2.9E-39 9.9E-44 347.9 14.5 255 629-921 13-268 (279)
119 3t9t_A Tyrosine-protein kinase 100.0 2.2E-39 7.4E-44 346.5 13.4 256 629-922 8-264 (267)
120 1ob3_A PFPK5, cell division co 100.0 7.1E-39 2.4E-43 346.5 17.5 265 629-916 2-281 (288)
121 3v8s_A RHO-associated protein 100.0 2E-38 6.7E-43 357.6 21.6 256 628-916 68-330 (410)
122 3kfa_A Tyrosine-protein kinase 100.0 2.4E-39 8.2E-44 350.3 13.3 257 628-921 12-270 (288)
123 2w4o_A Calcium/calmodulin-depe 100.0 6.2E-39 2.1E-43 356.2 16.7 253 626-916 50-306 (349)
124 1kob_A Twitchin; kinase, intra 100.0 1E-38 3.5E-43 358.0 18.6 256 625-916 47-305 (387)
125 3op5_A Serine/threonine-protei 100.0 4.3E-39 1.5E-43 360.4 15.3 277 628-920 34-327 (364)
126 4e5w_A Tyrosine-protein kinase 100.0 8E-40 2.7E-44 356.7 9.0 262 629-920 21-300 (302)
127 1mqb_A Ephrin type-A receptor 100.0 3.5E-39 1.2E-43 356.3 14.1 280 629-946 44-330 (333)
128 1xjd_A Protein kinase C, theta 100.0 6.6E-39 2.2E-43 354.0 16.2 250 628-914 16-268 (345)
129 2pmi_A Negative RE, cyclin-dep 100.0 1.6E-38 5.4E-43 348.6 19.1 265 628-916 4-294 (317)
130 2zv2_A Calcium/calmodulin-depe 100.0 1.2E-38 4E-43 346.6 17.8 266 628-915 12-292 (298)
131 2i1m_A Macrophage colony-stimu 100.0 2.6E-39 8.8E-44 357.9 12.8 261 628-921 45-325 (333)
132 3lzb_A Epidermal growth factor 100.0 2.2E-39 7.5E-44 356.8 12.1 265 629-929 15-285 (327)
133 3g33_A Cell division protein k 100.0 1.9E-38 6.5E-43 346.8 19.2 269 627-916 7-297 (308)
134 2yex_A Serine/threonine-protei 100.0 2E-38 7E-43 340.7 19.1 256 627-916 5-262 (276)
135 1o6v_A Internalin A; bacterial 100.0 1.1E-37 3.8E-42 361.0 26.7 348 106-532 44-391 (466)
136 4eut_A Serine/threonine-protei 100.0 2E-38 6.8E-43 358.8 19.9 273 629-924 9-311 (396)
137 2a2a_A Death-associated protei 100.0 7.2E-38 2.5E-42 344.2 23.6 261 625-916 8-273 (321)
138 1nxk_A MAP kinase-activated pr 100.0 1.6E-38 5.6E-43 359.2 18.8 254 625-916 57-322 (400)
139 2r5t_A Serine/threonine-protei 100.0 8.4E-39 2.9E-43 356.8 16.1 255 628-919 37-293 (373)
140 3a8x_A Protein kinase C IOTA t 100.0 1.8E-38 6.3E-43 351.2 18.6 252 628-910 8-264 (345)
141 2wtk_C Serine/threonine-protei 100.0 6.3E-38 2.1E-42 342.2 22.6 263 627-922 3-272 (305)
142 3gxj_A TGF-beta receptor type- 100.0 5.7E-40 2E-44 358.0 6.0 269 628-926 2-301 (303)
143 2vd5_A DMPK protein; serine/th 100.0 1.1E-38 3.9E-43 359.7 16.7 258 628-916 60-328 (412)
144 3is5_A Calcium-dependent prote 100.0 3.8E-38 1.3E-42 340.1 20.1 254 626-915 19-278 (285)
145 3a62_A Ribosomal protein S6 ki 100.0 2.2E-38 7.6E-43 348.7 18.3 253 628-916 16-277 (327)
146 3uc3_A Serine/threonine-protei 100.0 2.1E-38 7.3E-43 353.5 18.3 253 628-916 19-275 (361)
147 3p1a_A MYT1 kinase, membrane-a 100.0 1E-38 3.4E-43 349.1 15.3 250 626-916 54-305 (311)
148 3lxl_A Tyrosine-protein kinase 100.0 1.2E-39 4.2E-44 359.4 8.1 266 629-924 23-305 (327)
149 2v62_A Serine/threonine-protei 100.0 6.6E-39 2.2E-43 356.1 13.9 277 629-922 37-328 (345)
150 2i0e_A Protein kinase C-beta I 100.0 3.2E-38 1.1E-42 349.6 19.4 251 628-915 19-276 (353)
151 3lxp_A Non-receptor tyrosine-p 100.0 2E-39 6.7E-44 356.1 9.5 262 629-921 30-309 (318)
152 2xir_A Vascular endothelial gr 100.0 3.9E-39 1.3E-43 353.7 11.9 261 628-921 26-309 (316)
153 2h8h_A Proto-oncogene tyrosine 100.0 2.6E-39 9E-44 379.5 11.2 256 629-922 267-523 (535)
154 3e7e_A HBUB1, BUB1A, mitotic c 100.0 6.3E-38 2.2E-42 351.2 21.9 249 629-920 65-337 (365)
155 2y94_A 5'-AMP-activated protei 100.0 3.1E-38 1.1E-42 362.3 19.8 250 628-915 15-266 (476)
156 2a19_B Interferon-induced, dou 100.0 3.2E-38 1.1E-42 340.8 18.7 254 625-925 7-277 (284)
157 3c1x_A Hepatocyte growth facto 100.0 3.9E-39 1.3E-43 360.4 11.8 259 630-923 90-356 (373)
158 3dbq_A Dual specificity protei 100.0 1.2E-38 4.2E-43 353.6 15.7 253 629-916 9-274 (343)
159 3hko_A Calcium/calmodulin-depe 100.0 5.5E-38 1.9E-42 349.1 21.0 265 625-916 22-331 (345)
160 2x4f_A Myosin light chain kina 100.0 4.3E-38 1.5E-42 352.2 20.1 246 634-915 94-342 (373)
161 2eue_A Carbon catabolite derep 100.0 3.2E-38 1.1E-42 339.0 18.2 249 628-915 12-262 (275)
162 2qr7_A Ribosomal protein S6 ki 100.0 1.9E-38 6.5E-43 350.6 16.9 255 625-916 18-278 (342)
163 3dls_A PAS domain-containing s 100.0 2.7E-38 9.4E-43 348.9 18.1 253 625-916 20-275 (335)
164 3fdn_A Serine/threonine-protei 100.0 4.9E-38 1.7E-42 338.3 19.6 250 628-916 8-258 (279)
165 3kn6_A Ribosomal protein S6 ki 100.0 3E-38 1E-42 347.2 18.3 254 629-916 8-271 (325)
166 1b6c_B TGF-B superfamily recep 100.0 6.9E-38 2.4E-42 347.9 21.3 270 625-924 38-338 (342)
167 3ork_A Serine/threonine protei 100.0 5.5E-39 1.9E-43 351.4 12.2 262 627-919 10-278 (311)
168 2zmd_A Dual specificity protei 100.0 7.2E-39 2.5E-43 361.0 13.5 253 629-916 56-321 (390)
169 2acx_A G protein-coupled recep 100.0 3.3E-38 1.1E-42 366.4 19.4 256 629-916 184-445 (576)
170 1byg_A CSK, protein (C-termina 100.0 8.5E-39 2.9E-43 344.1 13.3 252 628-922 20-273 (278)
171 3brb_A Proto-oncogene tyrosine 100.0 1.2E-38 4.1E-43 349.3 14.6 260 629-921 34-307 (313)
172 1u59_A Tyrosine-protein kinase 100.0 1.1E-38 3.8E-43 344.9 14.0 256 629-920 9-270 (287)
173 3f3z_A Calcium/calmodulin-depe 100.0 1.6E-37 5.4E-42 334.0 22.6 252 626-915 6-261 (277)
174 3kk8_A Calcium/calmodulin depe 100.0 1.1E-37 3.8E-42 336.5 21.4 255 627-916 4-262 (284)
175 3c4z_A Rhodopsin kinase; Ser/T 100.0 4.2E-38 1.4E-42 365.0 19.2 251 629-910 185-438 (543)
176 2jii_A Serine/threonine-protei 100.0 9.2E-39 3.1E-43 356.1 13.1 262 629-921 42-335 (352)
177 3llt_A Serine/threonine kinase 100.0 3.1E-38 1.1E-42 353.3 17.1 207 618-851 23-261 (360)
178 3f66_A Hepatocyte growth facto 100.0 1.4E-38 4.8E-43 346.1 13.8 260 629-922 25-291 (298)
179 2wqm_A Serine/threonine-protei 100.0 3.6E-38 1.2E-42 344.9 17.1 265 628-923 31-298 (310)
180 3cc6_A Protein tyrosine kinase 100.0 1.4E-38 4.7E-43 343.0 13.5 257 628-921 11-272 (281)
181 2yfx_A Tyrosine-protein kinase 100.0 1E-38 3.4E-43 352.1 12.7 263 628-924 29-306 (327)
182 4fvq_A Tyrosine-protein kinase 100.0 1.5E-38 5.3E-43 344.2 13.7 251 629-922 8-275 (289)
183 3pls_A Macrophage-stimulating 100.0 2.1E-38 7.3E-43 344.7 14.9 259 630-922 22-287 (298)
184 3cok_A Serine/threonine-protei 100.0 7.3E-38 2.5E-42 336.8 18.8 253 628-916 10-263 (278)
185 3lm5_A Serine/threonine-protei 100.0 7.6E-38 2.6E-42 344.8 19.0 265 619-916 17-288 (327)
186 1u5q_A Serine/threonine protei 100.0 2.3E-38 7.8E-43 351.1 14.8 253 628-919 53-309 (348)
187 4hgt_A Casein kinase I isoform 100.0 9.2E-38 3.1E-42 339.3 19.2 262 626-921 6-279 (296)
188 4ejn_A RAC-alpha serine/threon 100.0 3E-38 1E-42 363.3 16.1 251 628-915 147-404 (446)
189 3g2f_A Bone morphogenetic prot 100.0 2.4E-38 8.4E-43 350.6 14.5 264 628-921 12-317 (336)
190 2id5_A Lingo-1, leucine rich r 100.0 1.9E-37 6.6E-42 360.7 22.7 319 161-530 14-334 (477)
191 2ozo_A Tyrosine-protein kinase 100.0 2.1E-38 7.3E-43 377.0 14.8 249 636-920 343-596 (613)
192 2h34_A Serine/threonine-protei 100.0 2E-37 6.8E-42 338.6 21.2 266 626-924 31-298 (309)
193 3bhy_A Death-associated protei 100.0 2E-37 6.7E-42 334.4 20.5 257 628-915 4-265 (283)
194 3uzp_A CKI-delta, CKID, casein 100.0 1.6E-37 5.4E-42 337.5 19.8 260 628-921 8-279 (296)
195 2buj_A Serine/threonine-protei 100.0 4.2E-38 1.4E-42 345.7 14.9 263 629-924 29-308 (317)
196 3oz6_A Mitogen-activated prote 100.0 5.9E-38 2E-42 354.4 16.5 268 625-916 5-329 (388)
197 3i6u_A CDS1, serine/threonine- 100.0 5.4E-38 1.8E-42 357.4 16.1 263 625-916 131-400 (419)
198 1fvr_A Tyrosine-protein kinase 100.0 3.3E-38 1.1E-42 347.9 13.9 258 629-923 25-301 (327)
199 1x8b_A WEE1HU, WEE1-like prote 100.0 4.1E-38 1.4E-42 340.7 13.9 249 626-916 8-280 (289)
200 1vzo_A Ribosomal protein S6 ki 100.0 7.7E-38 2.6E-42 348.5 16.5 260 628-918 53-324 (355)
201 1xbb_A Tyrosine-protein kinase 100.0 3.7E-38 1.3E-42 341.4 13.3 256 629-920 16-277 (291)
202 4agu_A Cyclin-dependent kinase 100.0 1.2E-37 4.1E-42 341.0 17.2 265 628-916 2-285 (311)
203 2vgo_A Serine/threonine-protei 100.0 4.1E-37 1.4E-41 332.0 21.2 249 628-915 13-262 (284)
204 3ttj_A Mitogen-activated prote 100.0 1.1E-37 3.9E-42 358.6 17.6 263 627-916 60-356 (464)
205 3mwu_A Calmodulin-domain prote 100.0 3.3E-37 1.1E-41 358.7 21.6 260 625-920 18-283 (486)
206 3mtl_A Cell division protein k 100.0 4E-38 1.4E-42 346.5 13.0 262 629-915 2-281 (324)
207 3a7i_A MST3 kinase, serine/thr 100.0 1E-37 3.6E-42 340.1 16.1 250 628-916 21-271 (303)
208 2w5a_A Serine/threonine-protei 100.0 1.3E-38 4.6E-43 342.7 8.6 261 628-923 5-275 (279)
209 2ac3_A MAP kinase-interacting 100.0 7.1E-38 2.4E-42 343.6 14.5 260 628-916 11-296 (316)
210 3nsz_A CK II alpha, casein kin 100.0 4.3E-37 1.5E-41 339.6 20.7 257 629-916 36-320 (330)
211 2y7j_A Phosphorylase B kinase 100.0 8.7E-37 3E-41 341.1 23.4 263 625-916 90-360 (365)
212 2w1i_A JAK2; chromosomal rearr 100.0 1.3E-37 4.3E-42 343.0 16.1 263 629-921 41-321 (326)
213 2jam_A Calcium/calmodulin-depe 100.0 5.8E-37 2E-41 334.3 20.9 254 625-916 5-262 (304)
214 1u46_A ACK-1, activated CDC42 100.0 1E-37 3.5E-42 338.0 14.7 263 629-924 18-286 (291)
215 2r3i_A Cell division protein k 100.0 2.2E-37 7.6E-42 336.8 17.4 265 629-915 3-283 (299)
216 4fl3_A Tyrosine-protein kinase 100.0 7.7E-38 2.6E-42 372.9 14.8 250 635-920 375-629 (635)
217 1cm8_A Phosphorylated MAP kina 100.0 1.7E-37 5.8E-42 347.0 16.6 262 627-916 23-308 (367)
218 2rku_A Serine/threonine-protei 100.0 3.2E-37 1.1E-41 334.6 18.2 252 628-916 14-266 (294)
219 3lij_A Calcium/calmodulin depe 100.0 8.5E-37 2.9E-41 355.8 23.0 256 625-916 33-292 (494)
220 1t4h_A Serine/threonine-protei 100.0 5.4E-37 1.8E-41 332.2 19.6 250 629-916 26-283 (290)
221 1ua2_A CAK, cell division prot 100.0 2.6E-37 9.1E-42 343.3 17.4 271 626-916 7-292 (346)
222 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1.2E-37 4E-42 343.5 14.3 267 625-915 30-318 (329)
223 3nyv_A Calmodulin-domain prote 100.0 2.8E-37 9.7E-42 359.4 18.1 255 626-915 23-281 (484)
224 2h6d_A 5'-AMP-activated protei 100.0 4.6E-37 1.6E-41 330.1 18.4 251 628-916 10-262 (276)
225 3kvw_A DYRK2, dual specificity 100.0 5.1E-37 1.8E-41 350.2 19.7 201 625-852 93-302 (429)
226 2owb_A Serine/threonine-protei 100.0 3.3E-37 1.1E-41 340.8 17.6 252 628-916 40-292 (335)
227 3rp9_A Mitogen-activated prote 100.0 4.2E-37 1.4E-41 355.3 19.1 198 627-845 51-280 (458)
228 3eb0_A Putative uncharacterize 100.0 2.8E-37 9.5E-42 348.1 17.0 260 627-915 5-321 (383)
229 1blx_A Cyclin-dependent kinase 100.0 5.7E-37 1.9E-41 338.1 19.1 273 628-924 10-307 (326)
230 3sv0_A Casein kinase I-like; t 100.0 6.6E-37 2.3E-41 351.9 20.0 260 628-920 6-276 (483)
231 2ycf_A Serine/threonine-protei 100.0 3.7E-37 1.3E-41 338.7 17.1 262 625-915 6-274 (322)
232 3pfq_A PKC-B, PKC-beta, protei 100.0 9.6E-37 3.3E-41 366.0 21.8 251 628-915 340-597 (674)
233 2id5_A Lingo-1, leucine rich r 100.0 1.1E-36 3.7E-41 354.4 21.5 325 185-559 14-341 (477)
234 3com_A Serine/threonine-protei 100.0 1.3E-36 4.4E-41 333.3 20.7 252 626-915 26-278 (314)
235 3mi9_A Cell division protein k 100.0 9E-37 3.1E-41 340.0 19.8 267 628-916 16-312 (351)
236 3eqc_A Dual specificity mitoge 100.0 2E-37 6.7E-42 346.7 14.4 261 628-915 32-324 (360)
237 2clq_A Mitogen-activated prote 100.0 7.8E-37 2.7E-41 331.8 18.3 252 629-915 22-278 (295)
238 3fme_A Dual specificity mitoge 100.0 1.7E-37 5.9E-42 336.1 13.1 253 628-915 6-266 (290)
239 2vwi_A Serine/threonine-protei 100.0 1.1E-37 3.6E-42 340.1 11.5 263 628-916 14-288 (303)
240 3o6n_A APL1; leucine-rich repe 100.0 5.7E-36 2E-40 338.6 26.1 347 14-435 2-353 (390)
241 3byv_A Rhoptry kinase; malaria 100.0 1.3E-37 4.5E-42 349.9 12.6 244 628-915 72-359 (377)
242 4aaa_A Cyclin-dependent kinase 100.0 2.3E-37 7.8E-42 341.7 14.3 266 628-916 24-307 (331)
243 2pml_X PFPK7, Ser/Thr protein 100.0 2.7E-37 9.4E-42 343.9 15.0 277 628-916 30-323 (348)
244 3q5i_A Protein kinase; CDPK, m 100.0 2E-36 7E-41 353.5 22.9 267 625-916 32-302 (504)
245 2xrw_A Mitogen-activated prote 100.0 1.1E-36 3.6E-41 341.6 19.5 259 627-916 23-319 (371)
246 3n9x_A Phosphotransferase; mal 100.0 5.5E-37 1.9E-41 350.8 17.5 204 626-850 23-253 (432)
247 1wak_A Serine/threonine-protei 100.0 9.1E-37 3.1E-41 346.3 19.0 263 627-916 35-392 (397)
248 2x7f_A TRAF2 and NCK-interacti 100.0 8E-37 2.7E-41 336.9 17.8 252 627-915 22-286 (326)
249 1j1b_A Glycogen synthase kinas 100.0 4.2E-37 1.4E-41 350.2 15.8 259 629-916 54-337 (420)
250 3q60_A ROP5B; pseudokinase, tr 100.0 1.4E-37 4.9E-42 349.0 11.7 255 629-915 62-352 (371)
251 2vx3_A Dual specificity tyrosi 100.0 2.1E-36 7.1E-41 340.8 20.5 202 625-851 50-260 (382)
252 3oja_B Anopheles plasmodium-re 100.0 8.1E-36 2.8E-40 356.0 26.2 349 12-435 6-359 (597)
253 3ll6_A Cyclin G-associated kin 100.0 4E-37 1.4E-41 340.9 13.8 254 629-921 28-307 (337)
254 2y4i_B KSR2, HKSR2, kinase sup 100.0 3.6E-37 1.2E-41 338.5 13.3 261 628-924 32-304 (319)
255 3an0_A Dual specificity mitoge 100.0 2.7E-37 9.2E-42 342.7 12.4 252 628-915 50-310 (340)
256 2j7t_A Serine/threonine-protei 100.0 6.8E-37 2.3E-41 333.5 15.0 254 627-916 17-276 (302)
257 1phk_A Phosphorylase kinase; g 100.0 2.1E-36 7.1E-41 329.0 18.7 262 626-915 14-283 (298)
258 3pg1_A Mitogen-activated prote 100.0 5.9E-37 2E-41 343.2 14.4 276 625-916 18-317 (362)
259 2j0j_A Focal adhesion kinase 1 100.0 3.7E-37 1.3E-41 368.5 13.5 256 628-920 389-649 (656)
260 1z57_A Dual specificity protei 100.0 2.9E-36 9.9E-41 334.3 19.7 261 627-916 12-329 (339)
261 3rgf_A Cyclin-dependent kinase 100.0 9.8E-37 3.4E-41 346.3 16.3 268 626-916 17-334 (405)
262 4e7w_A Glycogen synthase kinas 100.0 7.9E-37 2.7E-41 345.0 15.4 264 628-920 39-328 (394)
263 2wei_A Calmodulin-domain prote 100.0 6.5E-36 2.2E-40 323.1 21.3 256 624-915 17-276 (287)
264 3qyz_A Mitogen-activated prote 100.0 1.7E-36 5.9E-41 339.3 17.1 264 628-916 26-314 (364)
265 1q8y_A SR protein kinase; tran 100.0 2.4E-36 8.3E-41 339.8 18.1 261 629-916 19-334 (373)
266 3cek_A Dual specificity protei 100.0 1.7E-36 5.8E-41 332.1 16.4 253 629-916 28-293 (313)
267 2fst_X Mitogen-activated prote 100.0 1.3E-36 4.3E-41 339.5 14.8 261 627-916 27-312 (367)
268 1zy4_A Serine/threonine-protei 100.0 1.4E-36 4.6E-41 331.2 14.6 254 627-916 4-284 (303)
269 3fhr_A MAP kinase-activated pr 100.0 2.1E-36 7.1E-41 334.3 15.6 254 626-915 25-287 (336)
270 2b9h_A MAP kinase FUS3, mitoge 100.0 2E-36 7E-41 337.6 15.2 270 627-921 9-313 (353)
271 3e3p_A Protein kinase, putativ 100.0 5.7E-36 1.9E-40 335.0 18.3 268 625-916 19-315 (360)
272 4exu_A Mitogen-activated prote 100.0 2.3E-36 7.8E-41 338.9 15.1 260 627-916 40-324 (371)
273 3o6n_A APL1; leucine-rich repe 100.0 2.5E-35 8.4E-40 333.4 22.2 309 156-506 43-352 (390)
274 2rio_A Serine/threonine-protei 100.0 2.7E-36 9.3E-41 345.0 13.9 252 629-915 15-295 (434)
275 3aln_A Dual specificity mitoge 100.0 2.7E-36 9.4E-41 332.6 13.0 253 629-915 22-285 (327)
276 2i6l_A Mitogen-activated prote 100.0 3.7E-36 1.3E-40 330.6 13.9 260 627-915 9-305 (320)
277 2eu9_A Dual specificity protei 100.0 1.7E-35 5.8E-40 330.4 19.4 260 627-915 17-333 (355)
278 3coi_A Mitogen-activated prote 100.0 9.3E-36 3.2E-40 332.0 16.0 259 628-916 23-306 (353)
279 3a99_A Proto-oncogene serine/t 100.0 3E-36 1E-40 330.9 11.1 249 626-916 40-294 (320)
280 2iwi_A Serine/threonine-protei 100.0 5.7E-36 1.9E-40 327.8 13.1 250 625-916 27-284 (312)
281 3p23_A Serine/threonine-protei 100.0 1.1E-35 3.6E-40 338.9 15.7 249 629-915 24-283 (432)
282 3oja_B Anopheles plasmodium-re 100.0 4.7E-35 1.6E-39 349.4 21.3 336 157-557 50-386 (597)
283 2dyl_A Dual specificity mitoge 100.0 9.7E-36 3.3E-40 326.9 13.3 253 628-915 24-283 (318)
284 3qa8_A MGC80376 protein; kinas 100.0 1.2E-35 4.1E-40 347.8 13.9 270 627-922 12-309 (676)
285 3uqc_A Probable conserved tran 100.0 2.5E-35 8.6E-40 317.3 13.8 235 627-924 29-267 (286)
286 4fmz_A Internalin; leucine ric 100.0 5.3E-34 1.8E-38 317.2 22.4 152 128-290 39-190 (347)
287 4fmz_A Internalin; leucine ric 100.0 7.8E-34 2.7E-38 315.8 23.6 194 104-313 40-233 (347)
288 3m2w_A MAP kinase-activated pr 100.0 2.5E-34 8.7E-39 312.5 17.8 232 624-916 12-257 (299)
289 2pzi_A Probable serine/threoni 100.0 2.7E-34 9.4E-39 347.5 14.2 239 628-919 79-325 (681)
290 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-32 4.8E-37 303.4 25.7 294 159-504 34-331 (332)
291 3dzo_A Rhoptry kinase domain; 100.0 8.3E-34 2.9E-38 322.2 15.2 242 629-914 78-362 (413)
292 1ogq_A PGIP-2, polygalacturona 100.0 7.5E-34 2.6E-38 310.2 12.2 248 254-527 51-302 (313)
293 1xku_A Decorin; proteoglycan, 100.0 2.4E-32 8.4E-37 301.3 24.0 295 159-504 32-330 (330)
294 2vuw_A Serine/threonine-protei 100.0 6.8E-34 2.3E-38 314.6 9.2 251 628-914 19-329 (336)
295 1xku_A Decorin; proteoglycan, 100.0 2.4E-31 8.1E-36 293.4 27.1 219 62-314 32-253 (330)
296 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-31 5.2E-36 295.2 24.6 287 231-527 34-331 (332)
297 4fcg_A Uncharacterized protein 100.0 3.9E-32 1.3E-36 298.4 14.2 267 2-290 34-314 (328)
298 1z7x_W Ribonuclease inhibitor; 100.0 5.3E-36 1.8E-40 347.2 -17.9 108 422-529 314-440 (461)
299 1z7x_W Ribonuclease inhibitor; 100.0 3.9E-35 1.3E-39 339.9 -14.1 356 61-435 3-412 (461)
300 2z66_A Variable lymphocyte rec 100.0 3.2E-30 1.1E-34 281.1 17.5 281 25-322 7-295 (306)
301 2z80_A TOLL-like receptor 2, v 100.0 1.2E-30 4.1E-35 290.6 12.3 286 16-317 21-317 (353)
302 3ogk_B Coronatine-insensitive 100.0 4.4E-33 1.5E-37 333.4 -12.6 432 22-483 39-527 (592)
303 3g06_A SSPH2 (leucine-rich rep 100.0 2.1E-29 7.3E-34 297.3 17.6 298 11-418 8-305 (622)
304 3ogk_B Coronatine-insensitive 100.0 6.8E-33 2.3E-37 331.8 -13.4 407 75-508 63-528 (592)
305 2z66_A Variable lymphocyte rec 100.0 7.2E-29 2.5E-33 270.4 18.9 262 183-467 29-296 (306)
306 2z80_A TOLL-like receptor 2, v 100.0 3.6E-29 1.2E-33 278.7 14.8 275 233-533 34-318 (353)
307 3zyj_A Leucine-rich repeat-con 100.0 5.9E-28 2E-32 277.2 20.8 254 254-558 44-299 (440)
308 1wwl_A Monocyte differentiatio 100.0 2.4E-29 8.2E-34 274.7 8.8 250 55-315 37-310 (312)
309 3o53_A Protein LRIM1, AGAP0063 100.0 4.7E-29 1.6E-33 273.0 10.0 269 37-320 11-282 (317)
310 4fcg_A Uncharacterized protein 100.0 4.3E-28 1.5E-32 266.2 17.6 230 231-479 82-311 (328)
311 1ozn_A Reticulon 4 receptor; N 99.9 9.5E-28 3.3E-32 258.6 17.1 254 234-514 15-269 (285)
312 3zyj_A Leucine-rich repeat-con 99.9 6.4E-27 2.2E-31 268.6 24.2 247 159-434 44-292 (440)
313 3o53_A Protein LRIM1, AGAP0063 99.9 5.3E-29 1.8E-33 272.6 5.7 247 180-463 32-281 (317)
314 3g06_A SSPH2 (leucine-rich rep 99.9 6E-27 2.1E-31 276.3 23.6 264 159-513 41-304 (622)
315 1wwl_A Monocyte differentiatio 99.9 1E-28 3.5E-33 269.6 6.9 179 135-314 65-266 (312)
316 3zyi_A Leucine-rich repeat-con 99.9 1.4E-26 4.9E-31 266.6 24.6 244 162-434 58-303 (452)
317 3zyi_A Leucine-rich repeat-con 99.9 5.3E-27 1.8E-31 270.3 20.2 248 231-506 55-303 (452)
318 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-27 6.2E-32 256.4 14.6 254 256-536 14-268 (285)
319 3oja_A Leucine-rich immune mol 99.9 2.2E-27 7.4E-32 274.9 13.1 238 59-310 32-271 (487)
320 4azs_A Methyltransferase WBDD; 99.9 2E-28 6.9E-33 287.3 3.5 196 636-849 241-438 (569)
321 2o6q_A Variable lymphocyte rec 99.9 3.8E-26 1.3E-30 243.8 20.6 215 22-242 2-217 (270)
322 2p1m_B Transport inhibitor res 99.9 9.9E-31 3.4E-35 313.2 -20.8 462 23-527 33-542 (594)
323 3oja_A Leucine-rich immune mol 99.9 1E-26 3.6E-31 269.2 10.2 235 159-454 35-271 (487)
324 2p1m_B Transport inhibitor res 99.9 3.5E-30 1.2E-34 308.5 -21.5 419 65-529 47-519 (594)
325 3rfs_A Internalin B, repeat mo 99.9 7.5E-25 2.6E-29 233.9 14.0 226 61-324 19-245 (272)
326 3en9_A Glycoprotease, O-sialog 99.9 2E-25 6.9E-30 260.4 10.2 193 632-849 339-538 (540)
327 2z62_A TOLL-like receptor 4, v 99.9 2.3E-24 7.8E-29 230.9 17.0 224 258-533 12-241 (276)
328 2z62_A TOLL-like receptor 4, v 99.9 3.2E-24 1.1E-28 229.8 17.4 207 349-555 28-241 (276)
329 3rfs_A Internalin B, repeat mo 99.9 2.3E-24 8E-29 230.1 16.2 203 106-316 17-220 (272)
330 1p9a_G Platelet glycoprotein I 99.9 2.4E-23 8.3E-28 223.9 19.4 202 56-290 5-208 (290)
331 2o6q_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 220.5 20.7 163 344-530 56-219 (270)
332 1p9a_G Platelet glycoprotein I 99.9 3.8E-23 1.3E-27 222.4 20.2 203 81-315 6-209 (290)
333 4glp_A Monocyte differentiatio 99.9 1.5E-23 5.2E-28 228.5 16.1 200 109-315 92-308 (310)
334 2ast_B S-phase kinase-associat 99.9 3.3E-25 1.1E-29 244.9 0.4 269 21-323 33-315 (336)
335 3m19_A Variable lymphocyte rec 99.9 8.5E-23 2.9E-27 215.2 18.3 192 23-245 3-194 (251)
336 2xwt_C Thyrotropin receptor; s 99.9 6.5E-23 2.2E-27 214.5 15.1 195 62-263 32-236 (239)
337 3goz_A Leucine-rich repeat-con 99.9 1.6E-24 5.4E-29 241.7 2.0 249 66-316 3-299 (362)
338 1h6u_A Internalin H; cell adhe 99.9 9E-23 3.1E-27 221.8 15.3 210 63-290 21-230 (308)
339 3goz_A Leucine-rich repeat-con 99.9 5.9E-25 2E-29 245.2 -2.9 257 164-440 4-303 (362)
340 3m19_A Variable lymphocyte rec 99.9 1.4E-22 4.8E-27 213.5 15.0 159 350-508 36-194 (251)
341 2xwt_C Thyrotropin receptor; s 99.9 1.6E-22 5.3E-27 211.6 15.0 196 326-526 32-236 (239)
342 2ast_B S-phase kinase-associat 99.9 1.5E-23 5.1E-28 231.7 5.4 254 86-347 48-315 (336)
343 2ca6_A RAN GTPase-activating p 99.9 2E-24 7E-29 243.3 -1.6 187 130-316 91-318 (386)
344 1h6u_A Internalin H; cell adhe 99.9 4.3E-22 1.5E-26 216.4 16.7 206 43-267 26-231 (308)
345 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.3E-27 220.5 11.5 226 278-530 65-308 (310)
346 2ca6_A RAN GTPase-activating p 99.9 1E-24 3.4E-29 245.9 -8.6 40 227-266 91-135 (386)
347 3cvr_A Invasion plasmid antige 99.9 4.9E-22 1.7E-26 231.5 11.1 219 13-302 31-255 (571)
348 4ay9_X Follicle-stimulating ho 99.9 3.7E-21 1.3E-25 213.3 17.4 220 278-502 31-255 (350)
349 1zar_A RIO2 kinase; serine kin 99.8 8.3E-22 2.9E-26 210.5 7.8 161 631-823 92-253 (282)
350 4ay9_X Follicle-stimulating ho 99.8 1.6E-20 5.6E-25 208.0 18.0 239 280-525 12-255 (350)
351 3cvr_A Invasion plasmid antige 99.8 9E-21 3.1E-25 220.8 14.8 169 133-326 80-255 (571)
352 2o6s_A Variable lymphocyte rec 99.8 2.2E-20 7.7E-25 190.6 14.3 144 344-494 47-190 (208)
353 1m9s_A Internalin B; cell inva 99.8 1.6E-20 5.4E-25 221.4 13.3 191 60-266 20-210 (605)
354 2o6s_A Variable lymphocyte rec 99.8 1.3E-19 4.4E-24 185.0 17.9 160 158-324 28-188 (208)
355 1h6t_A Internalin B; cell adhe 99.8 3.8E-20 1.3E-24 199.1 12.9 171 130-314 43-213 (291)
356 1h6t_A Internalin B; cell adhe 99.8 2.6E-20 8.8E-25 200.5 11.4 189 62-290 25-213 (291)
357 1m9s_A Internalin B; cell inva 99.8 6E-20 2E-24 216.5 15.3 191 84-290 20-210 (605)
358 3e6j_A Variable lymphocyte rec 99.8 4.5E-19 1.5E-23 183.6 17.3 165 13-195 7-172 (229)
359 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 7E-24 184.8 11.8 156 352-510 14-170 (220)
360 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.8E-24 202.1 10.2 179 377-558 22-209 (361)
361 1dce_A Protein (RAB geranylger 99.8 1.4E-21 4.9E-26 229.0 -6.3 217 58-308 346-567 (567)
362 2v9t_B SLIT homolog 2 protein 99.8 4.8E-19 1.6E-23 182.1 12.1 153 352-507 14-166 (220)
363 1dce_A Protein (RAB geranylger 99.8 4.3E-22 1.5E-26 233.4 -12.4 216 274-523 346-567 (567)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.7E-23 178.0 15.0 153 89-244 15-167 (220)
365 2v9t_B SLIT homolog 2 protein 99.8 2.6E-18 8.9E-23 176.6 15.8 151 162-315 15-166 (220)
366 2xot_A Amphoterin-induced prot 99.8 4.7E-19 1.6E-23 197.1 10.3 176 352-530 21-203 (361)
367 1xeu_A Internalin C; cellular 99.8 1.3E-18 4.5E-23 184.0 12.4 171 106-292 17-187 (263)
368 1xeu_A Internalin C; cellular 99.8 5.4E-19 1.8E-23 187.0 8.2 171 131-316 17-187 (263)
369 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.6E-22 173.3 16.9 151 136-290 22-172 (229)
370 4ezg_A Putative uncharacterize 99.7 4.5E-18 1.5E-22 171.8 12.6 153 130-290 41-194 (197)
371 1w8a_A SLIT protein; signaling 99.7 4.7E-18 1.6E-22 170.7 11.8 176 376-555 11-187 (192)
372 4b8c_D Glucose-repressible alc 99.7 5.2E-19 1.8E-23 214.0 5.4 194 17-223 154-358 (727)
373 4ezg_A Putative uncharacterize 99.7 6.4E-18 2.2E-22 170.6 12.3 133 129-267 62-195 (197)
374 4b8c_D Glucose-repressible alc 99.7 1.8E-18 6.1E-23 209.3 7.9 163 258-479 206-369 (727)
375 1zth_A RIO1 serine protein kin 99.7 1.2E-17 4.1E-22 176.1 10.8 154 631-797 49-219 (258)
376 3sb4_A Hypothetical leucine ri 99.7 2.5E-17 8.6E-22 180.7 10.0 289 59-380 23-328 (329)
377 3sb4_A Hypothetical leucine ri 99.7 1.3E-17 4.6E-22 183.0 6.8 225 252-499 100-327 (329)
378 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.6E-21 160.0 11.4 112 134-245 30-141 (192)
379 2wfh_A SLIT homolog 2 protein 99.7 1.9E-16 6.5E-21 158.8 10.6 125 400-528 13-138 (193)
380 2ell_A Acidic leucine-rich nuc 99.6 2.5E-16 8.5E-21 154.5 9.6 129 160-290 26-160 (168)
381 2ell_A Acidic leucine-rich nuc 99.6 3.4E-16 1.2E-20 153.5 10.0 131 85-219 24-160 (168)
382 2je0_A Acidic leucine-rich nuc 99.6 4.4E-16 1.5E-20 149.3 7.3 129 60-214 16-148 (149)
383 4gyi_A RIO2 kinase; protein ki 99.6 3E-16 1E-20 171.0 6.0 149 631-797 97-265 (397)
384 2je0_A Acidic leucine-rich nuc 99.6 7E-16 2.4E-20 147.9 7.7 126 158-285 17-148 (149)
385 2o6r_A Variable lymphocyte rec 99.6 2.7E-15 9.3E-20 148.4 11.0 131 400-533 10-141 (177)
386 2wfh_A SLIT homolog 2 protein 99.6 2.3E-15 7.9E-20 150.9 10.5 129 376-508 13-141 (193)
387 2o6r_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 147.9 11.2 133 375-510 9-141 (177)
388 4fdw_A Leucine rich hypothetic 99.6 3.7E-14 1.3E-18 158.8 20.3 250 173-457 127-382 (401)
389 4fs7_A Uncharacterized protein 99.6 8.7E-14 3E-18 156.5 22.2 314 74-429 60-374 (394)
390 4fdw_A Leucine rich hypothetic 99.6 4.1E-14 1.4E-18 158.4 18.5 262 205-527 112-381 (401)
391 4fs7_A Uncharacterized protein 99.6 9.3E-14 3.2E-18 156.3 21.3 313 124-477 62-374 (394)
392 1a9n_A U2A', U2A'; complex (nu 99.5 1E-14 3.5E-19 144.0 8.1 105 183-290 43-153 (176)
393 1ds9_A Outer arm dynein; leuci 99.5 1E-16 3.5E-21 161.9 -6.7 132 177-314 43-185 (198)
394 1ds9_A Outer arm dynein; leuci 99.5 2.6E-16 8.8E-21 158.9 -4.2 136 57-198 14-156 (198)
395 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.7E-19 142.5 8.6 133 128-266 14-153 (176)
396 3g39_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 134.8 9.6 108 400-510 12-119 (170)
397 2r9u_A Variable lymphocyte rec 99.4 2.9E-13 9.8E-18 133.0 9.6 106 400-508 15-120 (174)
398 3g39_A Variable lymphocyte rec 99.4 7E-13 2.4E-17 129.8 11.4 107 136-246 12-118 (170)
399 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 128.5 11.6 107 136-246 15-121 (174)
400 3un9_A NLR family member X1; l 99.3 2E-14 6.8E-19 159.4 -5.4 117 157-273 125-259 (372)
401 4gt6_A Cell surface protein; l 99.3 4.9E-11 1.7E-15 134.0 21.5 301 159-480 65-368 (394)
402 3un9_A NLR family member X1; l 99.3 2.6E-14 9E-19 158.4 -5.7 183 84-266 71-283 (372)
403 4gt6_A Cell surface protein; l 99.3 4.4E-11 1.5E-15 134.3 20.0 333 123-481 53-390 (394)
404 2ifg_A High affinity nerve gro 99.2 1.1E-11 3.7E-16 136.9 8.1 104 401-507 12-117 (347)
405 2ifg_A High affinity nerve gro 99.2 1.7E-11 5.8E-16 135.3 7.7 103 426-530 13-117 (347)
406 3tm0_A Aminoglycoside 3'-phosp 99.2 9.7E-11 3.3E-15 123.7 11.5 145 626-795 11-212 (263)
407 4h09_A Hypothetical leucine ri 99.1 9.9E-09 3.4E-13 114.5 23.5 127 156-289 44-170 (379)
408 1nd4_A Aminoglycoside 3'-phosp 99.1 3.3E-10 1.1E-14 119.5 10.2 137 630-796 21-214 (264)
409 4h09_A Hypothetical leucine ri 99.1 7.8E-09 2.7E-13 115.4 21.8 303 176-503 40-343 (379)
410 2ra8_A Uncharacterized protein 99.0 9.1E-11 3.1E-15 128.7 1.9 184 56-264 134-341 (362)
411 3rw6_A Nuclear RNA export fact 98.9 2.2E-11 7.6E-16 126.4 -4.9 80 131-212 168-257 (267)
412 2ra8_A Uncharacterized protein 98.9 3.6E-10 1.2E-14 124.0 3.9 135 128-266 167-320 (362)
413 3dxp_A Putative acyl-COA dehyd 98.9 5.1E-09 1.7E-13 115.9 11.5 143 634-797 43-249 (359)
414 3sg8_A APH(2'')-ID; antibiotic 98.7 6.5E-09 2.2E-13 112.1 6.2 187 634-849 25-287 (304)
415 3r70_A Aminoglycoside phosphot 98.4 5.6E-07 1.9E-11 97.5 11.1 138 630-798 38-239 (320)
416 1io0_A Tropomodulin; LRR prote 98.4 3.4E-08 1.2E-12 97.6 -0.6 113 178-290 32-164 (185)
417 1io0_A Tropomodulin; LRR prote 98.4 4.4E-08 1.5E-12 96.8 -0.1 119 127-266 30-164 (185)
418 3rw6_A Nuclear RNA export fact 98.4 2.5E-08 8.7E-13 103.4 -2.4 80 155-236 167-257 (267)
419 3d1u_A Putative fructosamine-3 98.3 2.7E-06 9.1E-11 90.2 11.7 139 634-795 20-215 (288)
420 4gkh_A Aminoglycoside 3'-phosp 98.3 3.5E-06 1.2E-10 88.8 12.0 135 636-796 31-223 (272)
421 3tdw_A Gentamicin resistance p 98.2 6.4E-06 2.2E-10 88.4 11.5 137 634-797 24-225 (306)
422 3ovc_A Hygromycin-B 4-O-kinase 98.1 1.2E-05 4E-10 88.5 11.0 141 634-797 46-244 (362)
423 3ats_A Putative uncharacterize 97.9 2.6E-05 8.8E-10 85.8 10.9 83 634-730 25-121 (357)
424 3e4g_A ATP synthase subunit S, 97.9 3E-06 1E-10 81.4 1.7 83 159-241 62-150 (176)
425 2olc_A MTR kinase, methylthior 97.8 0.00015 5.2E-09 80.9 14.2 82 634-727 35-120 (397)
426 2q83_A YTAA protein; 2635576, 97.8 7.4E-05 2.5E-09 81.5 10.5 31 765-795 221-251 (346)
427 3e4g_A ATP synthase subunit S, 97.7 1.2E-05 4.2E-10 77.0 2.1 88 182-288 61-150 (176)
428 3jr1_A Putative fructosamine-3 97.4 0.0012 4E-08 70.4 13.2 137 634-792 41-232 (312)
429 3f7w_A Putative fructosamine-3 97.4 0.00062 2.1E-08 72.1 10.5 77 632-729 18-97 (288)
430 1pgv_A TMD-1, tropomodulin TMD 97.3 6.7E-05 2.3E-09 73.4 1.5 44 177-220 65-112 (197)
431 1pgv_A TMD-1, tropomodulin TMD 97.2 4E-05 1.4E-09 75.0 -0.3 113 177-289 36-169 (197)
432 3rfe_A Platelet glycoprotein I 97.1 0.0004 1.4E-08 63.5 5.3 62 473-558 12-75 (130)
433 2pyw_A Uncharacterized protein 97.1 0.0046 1.6E-07 69.3 14.8 77 765-845 231-312 (420)
434 3csv_A Aminoglycoside phosphot 97.0 0.0024 8.2E-08 69.1 11.3 141 635-797 24-218 (333)
435 3dxq_A Choline/ethanolamine ki 97.0 0.0036 1.2E-07 66.6 11.7 138 634-797 23-203 (301)
436 1nw1_A Choline kinase (49.2 KD 96.8 0.0033 1.1E-07 70.5 10.2 72 634-728 78-158 (429)
437 2ppq_A HSK, HK, homoserine kin 96.6 0.0043 1.5E-07 66.7 9.0 141 635-795 28-216 (322)
438 1zyl_A Hypothetical protein YI 96.6 0.011 3.8E-07 63.5 12.2 141 635-796 32-223 (328)
439 2qg7_A Ethanolamine kinase PV0 96.6 0.0085 2.9E-07 67.4 11.1 74 634-729 113-188 (458)
440 3feg_A Choline/ethanolamine ki 96.5 0.0072 2.5E-07 66.1 9.6 140 635-796 56-254 (379)
441 3c5i_A Choline kinase; choline 96.4 0.0057 1.9E-07 67.2 8.1 73 635-729 39-121 (369)
442 3rfe_A Platelet glycoprotein I 96.3 0.0062 2.1E-07 55.5 6.4 55 234-290 12-68 (130)
443 3i1a_A Spectinomycin phosphotr 95.7 0.02 6.7E-07 62.0 8.5 33 765-797 205-237 (339)
444 3f2s_A CK, chetk-alpha, cholin 95.3 0.043 1.5E-06 60.2 9.4 155 635-795 58-279 (401)
445 2yle_A Protein spire homolog 1 95.3 0.075 2.6E-06 52.1 9.7 103 727-848 33-135 (229)
446 3mes_A Choline kinase; malaria 94.5 0.16 5.4E-06 56.3 11.2 73 635-729 76-157 (424)
447 3g15_A CK, chetk-alpha, cholin 90.4 1.2 4E-05 49.1 11.1 30 767-796 245-280 (401)
448 2ks1_B Epidermal growth factor 86.3 1.3 4.5E-05 30.9 4.9 26 576-601 13-40 (44)
449 4ann_A ESSB; membrane protein, 75.3 4.6 0.00016 39.5 6.3 115 700-849 43-157 (215)
450 4ano_A ESSB; membrane protein, 73.7 7.5 0.00026 38.1 7.5 114 700-849 48-162 (219)
451 2l2t_A Receptor tyrosine-prote 70.9 5.2 0.00018 27.8 3.9 11 576-586 12-22 (44)
452 3cxl_A N-chimerin; SH2, RHO-GA 68.8 0.63 2.1E-05 52.3 -1.7 63 632-712 145-214 (463)
453 2l2t_A Receptor tyrosine-prote 67.5 8.9 0.0003 26.7 4.5 27 569-595 8-34 (44)
454 2jwa_A Receptor tyrosine-prote 64.4 14 0.00046 25.7 4.9 21 575-596 16-36 (44)
455 2k1k_A Ephrin type-A receptor 50.3 29 0.00099 23.3 4.6 15 573-587 9-23 (38)
456 2k1k_A Ephrin type-A receptor 42.7 22 0.00076 23.9 3.1 25 571-596 11-35 (38)
457 2k9y_A Ephrin type-A receptor 42.3 16 0.00055 24.9 2.5 14 575-588 14-27 (41)
458 1cja_A Protein (actin-fragmin 41.7 50 0.0017 34.4 7.2 79 716-796 156-237 (342)
459 2lz0_A Uncharacterized protein 39.7 62 0.0021 27.0 6.4 45 170-215 8-52 (100)
460 2lz0_A Uncharacterized protein 35.7 41 0.0014 28.2 4.6 45 194-239 8-52 (100)
461 2k1a_A Integrin alpha-IIB; sin 34.5 71 0.0024 22.0 4.6 24 573-596 9-32 (42)
462 2l6w_A Beta-type platelet-deri 34.1 12 0.00043 24.9 0.0 22 574-595 8-29 (39)
463 2l8s_A Integrin alpha-1; trans 25.1 1.4E+02 0.0049 21.7 5.0 21 576-596 11-31 (54)
464 2ks1_B Epidermal growth factor 22.0 78 0.0027 22.0 3.1 9 578-586 11-19 (44)
465 2klu_A T-cell surface glycopro 20.7 85 0.0029 23.7 3.2 21 576-596 12-32 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.8e-76 Score=722.19 Aligned_cols=555 Identities=31% Similarity=0.511 Sum_probs=428.2
Q ss_pred CCcccccccCCccccccccCCCCCcccceeeeCCCCceeEeccCCCccccc---cCc----------------------c
Q 002250 1 MNLKSKIEKSDTGVFSSWTEANSVCKFNGIVCDSNGLVAEINLPEQQLLGV---VPF----------------------D 55 (947)
Q Consensus 1 ~~~k~~~~~~~~~~~~sw~~~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~---~~~----------------------~ 55 (947)
|.||++++ |+. +++||+.++|||.|.||+|+ +|+|++++|++.++.|. ++. .
T Consensus 18 l~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~ 94 (768)
T 3rgz_A 18 ISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS 94 (768)
T ss_dssp HHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCC
T ss_pred HHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCch
Confidence 46999996 666 99999989999999999999 79999999999988876 432 4
Q ss_pred cccCCcccceeeccCccccCcCch--hhhcCCCccEEeCcCccCcCCCCC-c-ccccccceeecCCCCccC---------
Q 002250 56 SICGLQALQKINLGTNFLYGTITE--GLKSCTRLQVLDLGNNSFSGEVPD-L-SMLHELSFLNLNSSGISG--------- 122 (947)
Q Consensus 56 ~~~~l~~L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~-l-~~l~~L~~L~L~~n~i~~--------- 122 (947)
.++.+++|++|+|++|.+.+.+|. .++.+++|++|||++|.+++..+. + ..+++|++|+|++|++++
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 688899999999999999998888 899999999999999988765543 2 445555555555544433
Q ss_pred ----------------------------------------ccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcE
Q 002250 123 ----------------------------------------KFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYW 162 (947)
Q Consensus 123 ----------------------------------------~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 162 (947)
.+| .+.++++|++|+|++|.+... +|..+..+++|++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGD-FSRAISTCTELKL 251 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC--BCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCE
T ss_pred ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc--ccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCE
Confidence 222 144444444444444444321 2333444444444
Q ss_pred EEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCC-CCCcEEEeecccccccCCccCCCCCCccEEeccCCC
Q 002250 163 LYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKL-NKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNR 241 (947)
Q Consensus 163 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 241 (947)
|++++|.+++.+|.. .+++|++|+|++|++++.+|..+... ++|++|+|++|.+++.+|..|..+++|++|+|++|+
T Consensus 252 L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp EECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 444444444333221 23333333333333333444444443 555666666666555555555555555555555555
Q ss_pred CCC-CCcc-ccccC-------------------------CCCEEEccCccCcccCCCCccC--CCcCcEEEccCcccccc
Q 002250 242 LEG-DLSE-LRFLN-------------------------QLSSLHLFENQFSGEIPEEFGE--FKHLTELSLYTNRLTGT 292 (947)
Q Consensus 242 l~~-~~~~-l~~l~-------------------------~L~~L~L~~N~i~~~~~~~~~~--l~~L~~L~L~~N~l~~~ 292 (947)
+++ .+.. +..++ +|+.|+|++|++++.+|..+.. +++|++|++++|++++.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 542 2222 44444 4555555555555545555544 66788888888888888
Q ss_pred CCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCC
Q 002250 293 LPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSL 372 (947)
Q Consensus 293 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 372 (947)
+|..++.+++|++|++++|.+++.+|..+..+.+|+.|.+.+|.+.+.+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCccc-----------
Q 002250 373 PNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDI----------- 441 (947)
Q Consensus 373 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----------- 441 (947)
++|++|+|++|++++.+|..++.+++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|..+
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999998777644
Q ss_pred -----------------------------------------------------------ccccccchhhccccccCCCCC
Q 002250 442 -----------------------------------------------------------GKLKKLSSLYLHDNMFSGPLP 462 (947)
Q Consensus 442 -----------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~p 462 (947)
+.+++|+.|+|++|+++|.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 335778999999999999999
Q ss_pred cccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCCCcccc-cc
Q 002250 463 YSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIPEPLNI-KA 540 (947)
Q Consensus 463 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~~~~~-~~ 540 (947)
..|+.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..+. +++|++|||++|+|+|.||+..++ .+
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC
Confidence 9999999999999999999999999999999999999999999999999886 599999999999999999987664 44
Q ss_pred cccccccCCCCCCCCccccCccCCCC
Q 002250 541 FIDSFTGNPGLCSKTDEYFKSCSSGS 566 (947)
Q Consensus 541 ~~~~~~gN~~~c~~~~~~~~~~~s~~ 566 (947)
...+|.|||++||.+.. .|.+..
T Consensus 730 ~~~~~~gN~~Lcg~~l~---~C~~~~ 752 (768)
T 3rgz_A 730 PPAKFLNNPGLCGYPLP---RCDPSN 752 (768)
T ss_dssp CGGGGCSCTEEESTTSC---CCCSCC
T ss_pred CHHHhcCCchhcCCCCc---CCCCCc
Confidence 56689999999998854 687643
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-60 Score=585.36 Aligned_cols=488 Identities=32% Similarity=0.537 Sum_probs=386.4
Q ss_pred CceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceee
Q 002250 36 GLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLN 114 (947)
Q Consensus 36 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~ 114 (947)
...+.++++++.+.+..+ +..+++|+.|+|++|.+.+.+|. ++.+++|++|+|++|.+++..+. +..+++|++|+
T Consensus 178 ~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred CCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 457777787777777655 36777788888888888777766 77788888888888887765553 77778888888
Q ss_pred cCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhccc-ccCcEEEccCccccccCCccCCCCCCCCEEECcCcc
Q 002250 115 LNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKL-EKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNE 193 (947)
Q Consensus 115 L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 193 (947)
|++|.+.+.+|. . .+++|++|+|++|.+... +|..+..+ ++|++|+|++|.+++.+|..|+++++|++|+|++|+
T Consensus 254 Ls~n~l~~~~~~--~-~l~~L~~L~L~~n~l~~~-ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 254 ISSNQFVGPIPP--L-PLKSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp CCSSCCEESCCC--C-CCTTCCEEECCSSEEEES-CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred CCCCcccCccCc--c-ccCCCCEEECcCCccCCc-cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 888877766652 1 677788888888877532 45555553 778888888888877777777778888888888887
Q ss_pred cccccCcc-ccCCCCCcEEEeecccccccCCccCCCCC-CccEEeccCCCCCC-CCccccc--cCCCCEEEccCccCccc
Q 002250 194 LFGEIPAG-IVKLNKLWQLELYNNSLSGRLPVGFSNLT-NLMNFDVSQNRLEG-DLSELRF--LNQLSSLHLFENQFSGE 268 (947)
Q Consensus 194 l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~-~~~~l~~--l~~L~~L~L~~N~i~~~ 268 (947)
+++.+|.. +.++++|++|+|++|.+++.+|..+.+++ +|++|++++|++++ .+..+.. +++|++|+|++|++++.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 77667655 77777788888888887777777777776 77888888777765 2334444 66777777777777777
Q ss_pred CCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCC
Q 002250 269 IPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANC 348 (947)
Q Consensus 269 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l 348 (947)
+|..+..+++|++|+|++|++++.+|..++.+++|+.|++++|.+++.+|..+..+..|+.|++.+|++.+.+|..+.++
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCC-------------
Q 002250 349 KSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPS------------- 415 (947)
Q Consensus 349 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~------------- 415 (947)
++|+.|++++|++++.+|.+++.+++|++|+|++|++.+.+|..++.+++|++|++++|+++|.+|.
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 7777777777777777777777777777777777777777777777777777777777777766554
Q ss_pred ---------------------------------------------------------CCCCCCcceEEEcccCcccCCCC
Q 002250 416 ---------------------------------------------------------KISEASSLVSIQLSLNQFSGQIP 438 (947)
Q Consensus 416 ---------------------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~p 438 (947)
.+..+++|+.|||++|+++|.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 44556789999999999999999
Q ss_pred cccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccccccc
Q 002250 439 LDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLTYPKL 518 (947)
Q Consensus 439 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L 518 (947)
..|+++++|+.|+|++|+++|.+|..|+.+++|+.|||++|+++|.+|..+.++++|++|||++|+++|.+|....+..+
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 729 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGS
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987777777
Q ss_pred ceeeCCCCc-CCCC
Q 002250 519 SLLDLSNNQ-LAGP 531 (947)
Q Consensus 519 ~~L~ls~N~-l~~~ 531 (947)
....+.+|+ |+|.
T Consensus 730 ~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 730 PPAKFLNNPGLCGY 743 (768)
T ss_dssp CGGGGCSCTEEEST
T ss_pred CHHHhcCCchhcCC
Confidence 778888886 6663
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-57 Score=553.30 Aligned_cols=524 Identities=20% Similarity=0.188 Sum_probs=410.7
Q ss_pred CceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceee
Q 002250 36 GLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLN 114 (947)
Q Consensus 36 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~ 114 (947)
.+++.++|+++++.+.. ...|.++++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++.++. ++.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 47899999999887654 46799999999999999999999999999999999999999999987774 99999999999
Q ss_pred cCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCC--CCCCCCEEECcCc
Q 002250 115 LNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIG--NLTQLQNLELSDN 192 (947)
Q Consensus 115 L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N 192 (947)
|++|++++..+ ..|.++++|++|+|++|.+... .+..+.++++|++|++++|.+++..+..+. .+++|++|+|++|
T Consensus 104 L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCccCccCh-hHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 99999986544 7899999999999999999765 356678899999999999999977776654 5588999999999
Q ss_pred ccccccCccccCC---------------------------CCCcEEEeecccccccCCccCCCCCC--ccEEeccCCCCC
Q 002250 193 ELFGEIPAGIVKL---------------------------NKLWQLELYNNSLSGRLPVGFSNLTN--LMNFDVSQNRLE 243 (947)
Q Consensus 193 ~l~~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~ 243 (947)
++++..|..+..+ ++|++|++++|.+++..|..|..++. |++|+|++|+++
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 8887777666543 45667777777777777777777654 788888887777
Q ss_pred CCC-ccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccc-----cCCc----CccCcccccccccccccc
Q 002250 244 GDL-SELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTG-----TLPQ----KLGSWADFNYVDVSENLL 313 (947)
Q Consensus 244 ~~~-~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p~----~l~~l~~L~~L~Ls~N~l 313 (947)
+.+ ..+..+++|++|+|++|++++..|..|..+++|++|++++|...+ .+|. .|..+++|++|++++|.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 654 346777777778887777777666666666666666665544332 1221 445555555555555555
Q ss_pred cCCCCCCcccCC----------------------------ccceeeecccccCCcCCccccCCCCccEEEcccccccccC
Q 002250 314 TGPIPPDMCKTG----------------------------AMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTI 365 (947)
Q Consensus 314 ~~~~p~~~~~~~----------------------------~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 365 (947)
++..+..+..+. .++.|++.+|++.+..|..|..+++|+.|++++|.+++.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 554444444444 4555555666666677777888888888888888887666
Q ss_pred C-CCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCcccc--ccCCCCCCCCCcceEEEcccCcccCCCCcccc
Q 002250 366 P-PGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFS--GELPSKISEASSLVSIQLSLNQFSGQIPLDIG 442 (947)
Q Consensus 366 p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 442 (947)
| ..+..+++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..+..+++|+.|+|++|++++..|..|.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 5 46777888888888888888777788888888888888888876 56788899999999999999999988788899
Q ss_pred cccccchhhccccccCCCCC--------cccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc
Q 002250 443 KLKKLSSLYLHDNMFSGPLP--------YSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT 514 (947)
Q Consensus 443 ~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 514 (947)
++++|++|+|++|++++..+ ..|..+++|+.|+|++|+++...+..|.++++|+.|+|++|++++.++..+.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 99999999999999986522 2478899999999999999955455799999999999999999987777664
Q ss_pred -ccccceeeCCCCcCCCCCCCccc---ccccccccccCCCCCCCCc-cccCcc
Q 002250 515 -YPKLSLLDLSNNQLAGPIPEPLN---IKAFIDSFTGNPGLCSKTD-EYFKSC 562 (947)
Q Consensus 515 -~~~L~~L~ls~N~l~~~~p~~~~---~~~~~~~~~gN~~~c~~~~-~~~~~~ 562 (947)
+++|+.|+|++|+|++.+|..+. .......+.||||.|+|.. .|+...
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence 69999999999999998876442 2334557889999999986 776443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9e-57 Score=540.49 Aligned_cols=492 Identities=18% Similarity=0.179 Sum_probs=403.6
Q ss_pred ccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceeecCCCCccCccCcccccccCCCceeeC
Q 002250 62 ALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSL 140 (947)
Q Consensus 62 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~L 140 (947)
.++.|+|++|.|++..|..|..+++|++|+|++|++++..|. +..+++|++|+|++|++++..| ..|.++++|++|+|
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeec
Confidence 567777777777777777777777777777777777766543 7777777777777777775545 56777777777777
Q ss_pred CCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCc--EEEeecccc
Q 002250 141 GDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLW--QLELYNNSL 218 (947)
Q Consensus 141 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~--~L~L~~n~l 218 (947)
++|.++..+ +..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..|..+..+++|+ .|++++|.+
T Consensus 113 ~~n~i~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGG-GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCC-cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 777776532 34466777777777777777764434444577777777777777766677777777777 777777777
Q ss_pred cccCCccCCCCCCccEEeccCCCC---------------------CC-----C-CccccccC--CCCEEEccCccCcccC
Q 002250 219 SGRLPVGFSNLTNLMNFDVSQNRL---------------------EG-----D-LSELRFLN--QLSSLHLFENQFSGEI 269 (947)
Q Consensus 219 ~~~~~~~~~~l~~L~~L~Ls~N~l---------------------~~-----~-~~~l~~l~--~L~~L~L~~N~i~~~~ 269 (947)
++..|..|.. .+|++|++++|.. .. . ...+..+. +|+.|++++|.+++..
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred CccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 7666665544 5677777776641 10 0 11122222 7899999999999888
Q ss_pred CCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCc-cccCC
Q 002250 270 PEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPE-TYANC 348 (947)
Q Consensus 270 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~-~~~~l 348 (947)
+..|..+++|++|++++|+++ .+|..++.+++|++|++++|.+++..|..+..++.|+.|.+.+|.+.+.+|. .+..+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 888999999999999999999 8899999999999999999999988888999999999999999999877764 58999
Q ss_pred CCccEEEcccccccccC--CCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCC-CCCCCcceE
Q 002250 349 KSLIRFRVNNNSLSGTI--PPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSK-ISEASSLVS 425 (947)
Q Consensus 349 ~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~ 425 (947)
++|+.|++++|.+++.. +..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++..|.. +..+++|+.
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 99999999999999776 788999999999999999999999999999999999999999999776654 899999999
Q ss_pred EEcccCcccCCCCcccccccccchhhccccccCCC---CCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCC
Q 002250 426 IQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGP---LPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSN 502 (947)
Q Consensus 426 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 502 (947)
|++++|.+++..|..++.+++|+.|+|++|++++. .+..+..+++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 99999999998999999999999999999999873 346799999999999999999999999999999999999999
Q ss_pred CccCCccCCccc-ccccceeeCCCCcCCCCCCCccc--ccccccccccCCCCCCCCccc
Q 002250 503 NKFSGEIPISLT-YPKLSLLDLSNNQLAGPIPEPLN--IKAFIDSFTGNPGLCSKTDEY 558 (947)
Q Consensus 503 N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~~~~--~~~~~~~~~gN~~~c~~~~~~ 558 (947)
|++++.+|..+. ++.| .|++++|++++.+|+.+. .......+.||||.|+|+..|
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence 999999988776 5889 999999999998887654 233455789999999988654
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-56 Score=551.22 Aligned_cols=521 Identities=20% Similarity=0.202 Sum_probs=432.5
Q ss_pred cccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcC-chhhhcCCCccEEeCcCccCcCCCC-
Q 002250 25 CKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTI-TEGLKSCTRLQVLDLGNNSFSGEVP- 102 (947)
Q Consensus 25 C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~- 102 (947)
|.|.+|.+ --..++.|+|+++.+.+..+ .+|.++++|+.|+|++|.+.+.+ |..|..+++|++|+|++|.|++..|
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56777776 44678888888888776555 67888888999999888655554 7888888899999999888888755
Q ss_pred CcccccccceeecCCCCccCccC-cccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCC
Q 002250 103 DLSMLHELSFLNLNSSGISGKFP-WKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNL 181 (947)
Q Consensus 103 ~l~~l~~L~~L~L~~n~i~~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 181 (947)
.+..+++|++|+|++|.+++.++ ...+.++++|++|+|++|.+.....+..+.++++|++|+|++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 48888889999999888887544 23488888899999998888876666678888889999999888888888888877
Q ss_pred --CCCCEEECcCcccccccCccccCCCC------CcEEEeecccccccCCccCCCC---CCccEEeccCCCCC-------
Q 002250 182 --TQLQNLELSDNELFGEIPAGIVKLNK------LWQLELYNNSLSGRLPVGFSNL---TNLMNFDVSQNRLE------- 243 (947)
Q Consensus 182 --~~L~~L~Ls~N~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~------- 243 (947)
++|+.|+|++|.+.+..|..+..+.+ |++|+|++|.+++..+..+... ++++.|.++.+.+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 88888899988888877777766655 8888998888887777666543 56778887744332
Q ss_pred --CCC-ccccc--cCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCC
Q 002250 244 --GDL-SELRF--LNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIP 318 (947)
Q Consensus 244 --~~~-~~l~~--l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 318 (947)
... ..+.. .++|+.|+|++|.+.+..|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..|
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 111 12333 3689999999999999999999999999999999999998889999999999999999999998889
Q ss_pred CCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCccccccc
Q 002250 319 PDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKS 398 (947)
Q Consensus 319 ~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 398 (947)
..+..+..|+.|++.+|++.+..+..|.++++|+.|+|++|.+++. ..+++|+.|++++|+++.. |.. ..+
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l-~~~---~~~ 402 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL-PKI---NLT 402 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC-CCC---CTT
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc-ccc---ccc
Confidence 9999999999999999999988889999999999999999999842 3388999999999999854 332 467
Q ss_pred ccEEEccCccccccCC-CCCCCCCcceEEEcccCcccCCCCc-ccccccccchhhccccccC-----CCCCccccccccc
Q 002250 399 LALLLLANNRFSGELP-SKISEASSLVSIQLSLNQFSGQIPL-DIGKLKKLSSLYLHDNMFS-----GPLPYSIGSCVSL 471 (947)
Q Consensus 399 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L 471 (947)
++.|++++|++++... ..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.++ +..+..|..+++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 9999999999985322 2356899999999999999965443 4567899999999999997 4556778999999
Q ss_pred ceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCcccccccceeeCCCCcCCCCCCCcccccccccccccCCCC
Q 002250 472 TDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLTYPKLSLLDLSNNQLAGPIPEPLNIKAFIDSFTGNPGL 551 (947)
Q Consensus 472 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~gN~~~ 551 (947)
+.|+|++|+|++..|..|.++++|+.|+|++|+|++.+|..+. ++|+.|||++|+|++.+|+.+. ......+.||||.
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~-~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFV-SLSVLDITHNKFI 560 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCS-SCCEEEEEEECCC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhC-CcCEEEecCCCcc
Confidence 9999999999999999999999999999999999988887766 8999999999999999998764 4445678999999
Q ss_pred CCCCccc
Q 002250 552 CSKTDEY 558 (947)
Q Consensus 552 c~~~~~~ 558 (947)
|+|+..+
T Consensus 561 C~c~~~~ 567 (844)
T 3j0a_A 561 CECELST 567 (844)
T ss_dssp CSSSCCS
T ss_pred cccccHH
Confidence 9998754
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.1e-57 Score=543.99 Aligned_cols=474 Identities=21% Similarity=0.321 Sum_probs=321.8
Q ss_pred cccccCCCCCccc---ceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccc------cC------cCch
Q 002250 15 FSSWTEANSVCKF---NGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFL------YG------TITE 79 (947)
Q Consensus 15 ~~sw~~~~~~C~w---~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i------~~------~~~~ 79 (947)
.++|+.++|||.| .||+|+..|||++|+|+++++.|.+| .+++.|++|+.|+|++|.+ .+ .+|.
T Consensus 57 ~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~ 135 (636)
T 4eco_A 57 GANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135 (636)
T ss_dssp -CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred CCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchH
Confidence 4589999999999 99999988999999999999999988 6888999999999988876 23 3343
Q ss_pred hhhcCCCccEEeCcCccCcCCCCC-cc-cccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhccc
Q 002250 80 GLKSCTRLQVLDLGNNSFSGEVPD-LS-MLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKL 157 (947)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~i~~~~~~-l~-~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l 157 (947)
.+ +..|+ +++++|.+.+.++. +. .+..+..+++....+.. .....++.+.+.
T Consensus 136 ~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~---------------- 189 (636)
T 4eco_A 136 EQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIG---------------- 189 (636)
T ss_dssp HH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTT----------------
T ss_pred HH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-------ccccchhhhhhc----------------
Confidence 33 45566 66666666654443 22 12333333443332221 011111111111
Q ss_pred ccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccc-----------------cCcccc--CCCCCcEEEeecccc
Q 002250 158 EKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGE-----------------IPAGIV--KLNKLWQLELYNNSL 218 (947)
Q Consensus 158 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l 218 (947)
..+|++++ +|..|+++++|++|+|++|++++. +|..+. ++++|++|+|++|.+
T Consensus 190 -------~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 190 -------QLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp -------CCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred -------cccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 12345554 555555555555555555555543 555555 555555555555555
Q ss_pred cccCCccCCCCCCccEEeccCCC-CCC--CCcccccc------CCCCEEEccCccCcccCCC--CccCCCcCcEEEccCc
Q 002250 219 SGRLPVGFSNLTNLMNFDVSQNR-LEG--DLSELRFL------NQLSSLHLFENQFSGEIPE--EFGEFKHLTELSLYTN 287 (947)
Q Consensus 219 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~--~~~~l~~l------~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~N 287 (947)
.+.+|..|.++++|++|+|++|+ +++ .+..+..+ ++|++|+|++|+++ .+|. .++.+++|++|++++|
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 55555555555555556655555 554 33334433 55666666666665 5555 5566666666666666
Q ss_pred cccccCCcCccCcccccccccccccccCCCCCCcccCCc-cceeeecccccCCcCCccccCCC--CccEEEccccccccc
Q 002250 288 RLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGA-MTDLLVLQNNFNGTVPETYANCK--SLIRFRVNNNSLSGT 364 (947)
Q Consensus 288 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-l~~L~l~~n~~~~~~p~~~~~l~--~L~~L~L~~n~l~~~ 364 (947)
+++|.+| .++.+++|++|++++|.++ .+|..+..+.. |+.|++.+|.+. .+|..+..++ +|+.|++++|.+++.
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 6665555 5556666666666666665 55555555555 666666666655 5566665544 788888888888887
Q ss_pred CCCCCC-------CCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCC-C-------CcceEEEcc
Q 002250 365 IPPGIW-------SLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISE-A-------SSLVSIQLS 429 (947)
Q Consensus 365 ~p~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l-------~~L~~L~Ls 429 (947)
.|..+. .+++|+.|+|++|+++..++..+..+++|++|+|++|+++ .+|..+.. . ++|+.|+|+
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECc
Confidence 777777 7778888888888888655555666888888888888888 56654433 2 288888888
Q ss_pred cCcccCCCCcccc--cccccchhhccccccCCCCCcccccccccceeec------cCceeeeecCCCCCccCcCcEEECC
Q 002250 430 LNQFSGQIPLDIG--KLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINF------AQNSLSGKIPDSLGSLPSLNSLNLS 501 (947)
Q Consensus 430 ~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls 501 (947)
+|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+.++++|+.|+|+
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 88888 6777776 88888899999998887 7888888888999988 5688889999999999999999999
Q ss_pred CCccCCccCCcccccccceeeCCCCcCCCCC
Q 002250 502 NNKFSGEIPISLTYPKLSLLDLSNNQLAGPI 532 (947)
Q Consensus 502 ~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~ 532 (947)
+|++ +.+|..+. ++|+.|||++|++....
T Consensus 575 ~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 575 SNDI-RKVNEKIT-PNISVLDIKDNPNISID 603 (636)
T ss_dssp SSCC-CBCCSCCC-TTCCEEECCSCTTCEEE
T ss_pred CCcC-CccCHhHh-CcCCEEECcCCCCcccc
Confidence 9999 57777655 89999999999887533
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.6e-55 Score=522.84 Aligned_cols=510 Identities=18% Similarity=0.152 Sum_probs=392.3
Q ss_pred ceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-Ccccccccceeec
Q 002250 37 LVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-DLSMLHELSFLNL 115 (947)
Q Consensus 37 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L 115 (947)
.++.++++++.+.+..+ .+|.++++|+.|+|++|.+.+..|..|..+++|++|+|++|++++.+| .++.+++|++|+|
T Consensus 33 ~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56677777776655443 567777777777777777777777777777777777777777776644 3777777777777
Q ss_pred CCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCC----EEECcC
Q 002250 116 NSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQ----NLELSD 191 (947)
Q Consensus 116 ~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~----~L~Ls~ 191 (947)
++|.+.+..+ ..+.++++|++|+|++|.+....+|..+.++++|++|++++|++++..|..++.+++|+ +|++++
T Consensus 112 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccccccc-cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 7777765443 45777777777777777776655677777777777777777777776666666655544 677777
Q ss_pred cccccccCccccCCCCCcEEEeeccccc-ccCCccCCCCCCccEEeccCCCCCCC------C-ccccccC--CCCEEEc-
Q 002250 192 NELFGEIPAGIVKLNKLWQLELYNNSLS-GRLPVGFSNLTNLMNFDVSQNRLEGD------L-SELRFLN--QLSSLHL- 260 (947)
Q Consensus 192 N~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~------~-~~l~~l~--~L~~L~L- 260 (947)
|.+++..+..+... +|++|++++|.++ +..|..+.++++|+.+++..+.+... . ..+..+. +++.+++
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 77765544444433 6777777777765 35556667777777776654443321 0 1111111 3556666
Q ss_pred cCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCc
Q 002250 261 FENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGT 340 (947)
Q Consensus 261 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~ 340 (947)
..|.+.+.+|. +..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+ +.+| .+ .+..|+.|.+.+|...+.
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 77788877777 888999999999999997 566 788899999999999999 5777 45 889999999999976654
Q ss_pred CCccccCCCCccEEEccccccccc--CCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCC-CCC
Q 002250 341 VPETYANCKSLIRFRVNNNSLSGT--IPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELP-SKI 417 (947)
Q Consensus 341 ~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~ 417 (947)
. .+..+++|+.|++++|.+++. .|..+..+++|+.|++++|.+.+ ++..+..+++|+.|++++|++.+..| ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 4 677899999999999999866 37778889999999999999986 44788899999999999999998777 688
Q ss_pred CCCCcceEEEcccCcccCCCCcccccccccchhhccccccCC-CCCcccccccccceeeccCceeeeecCCCCCccCcCc
Q 002250 418 SEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSG-PLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLN 496 (947)
Q Consensus 418 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 496 (947)
..+++|+.|++++|++++..|..++++++|+.|+|++|.+++ .+|..|+.+++|+.|+|++|++++..|..|.++++|+
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 999999999999999998889999999999999999999987 4788899999999999999999998899999999999
Q ss_pred EEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCCCccc-c--cccccccccCCCCCCCCcccc
Q 002250 497 SLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIPEPLN-I--KAFIDSFTGNPGLCSKTDEYF 559 (947)
Q Consensus 497 ~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~~~~-~--~~~~~~~~gN~~~c~~~~~~~ 559 (947)
.|+|++|++++.+|..+. +++|+.|||++|+++. +|..+. . ......+.+|||.|+|+..|+
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~ 566 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQKF 566 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTHHH
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCccHHH
Confidence 999999999998887775 5899999999999985 444343 2 134457889999999988764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7e-55 Score=524.03 Aligned_cols=478 Identities=20% Similarity=0.165 Sum_probs=416.8
Q ss_pred cccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceeecCCCCccCccCcccccccCCCceee
Q 002250 61 QALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLS 139 (947)
Q Consensus 61 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~ 139 (947)
++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..+. +..+++|++|+|++|.+++..| ..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEE
Confidence 7899999999999999999999999999999999999987664 8999999999999999997666 7899999999999
Q ss_pred CCCCCCCCCCCChhhcccccCcEEEccCccccc-cCCccCCCCCCCCEEECcCcccccccCccccCCCCCc----EEEee
Q 002250 140 LGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTG-QIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLW----QLELY 214 (947)
Q Consensus 140 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~----~L~L~ 214 (947)
|++|.+...+ +..+.++++|++|++++|.+++ .+|..|+++++|++|+|++|++++..+..+..+.+|+ +|+++
T Consensus 111 L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSS-SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCcccccc-ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 9999998754 3568999999999999999986 5699999999999999999999988888888776655 89999
Q ss_pred cccccccCCccCCCCCCccEEeccCCCCCC--CCccccccCCCCEEEccCccCccc---------CCCCccCCCcCcEEE
Q 002250 215 NNSLSGRLPVGFSNLTNLMNFDVSQNRLEG--DLSELRFLNQLSSLHLFENQFSGE---------IPEEFGEFKHLTELS 283 (947)
Q Consensus 215 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~l~~l~~L~~L~L~~N~i~~~---------~~~~~~~l~~L~~L~ 283 (947)
+|.+++..+..+... +|++|++++|.+.+ .+..+..++.|+.+++..+.+.+. .+..+..+ .++.++
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~ 267 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFR 267 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEE
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhhee
Confidence 999997777777665 99999999999874 344678899999998876655421 11222333 477788
Q ss_pred c-cCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEccccccc
Q 002250 284 L-YTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLS 362 (947)
Q Consensus 284 L-~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 362 (947)
+ ..|.+++.+|. +..+++|+.|++++|.+. .+| .+..+..++.|.+.+|.+ +.+| .+ .+++|+.|++++|...
T Consensus 268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSC
T ss_pred ccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCc
Confidence 8 88889988887 999999999999999997 566 888999999999999999 7888 45 9999999999999765
Q ss_pred ccCCCCCCCCCCcceeccccCCcCCC--CCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCC-c
Q 002250 363 GTIPPGIWSLPNLSIIDLSTNQFEGP--VTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIP-L 439 (947)
Q Consensus 363 ~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~ 439 (947)
+.. .+..+++|+.|++++|++++. .+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++.+..| .
T Consensus 342 ~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 342 ISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp EEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChh
Confidence 444 677899999999999999876 3778899999999999999998 577899999999999999999998877 6
Q ss_pred ccccccccchhhccccccCCCCCcccccccccceeeccCceeee-ecCCCCCccCcCcEEECCCCccCCccCCccc-ccc
Q 002250 440 DIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSG-KIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPK 517 (947)
Q Consensus 440 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~ 517 (947)
.+.++++|+.|++++|.+++..|..|+.+++|++|++++|++++ .+|..+..+++|+.|+|++|++++.+|..+. +++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 89999999999999999999999999999999999999999998 5899999999999999999999999888775 699
Q ss_pred cceeeCCCCcCCCCCCCccc--ccccccccccCCCC
Q 002250 518 LSLLDLSNNQLAGPIPEPLN--IKAFIDSFTGNPGL 551 (947)
Q Consensus 518 L~~L~ls~N~l~~~~p~~~~--~~~~~~~~~gN~~~ 551 (947)
|+.|+|++|++++.+|..+. .......+.+|...
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999999999998887664 22334456677643
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-53 Score=515.46 Aligned_cols=495 Identities=18% Similarity=0.177 Sum_probs=381.1
Q ss_pred CceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceee
Q 002250 36 GLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLN 114 (947)
Q Consensus 36 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~ 114 (947)
.+++.++++++.+.+..| ..++++++|+.|+|++|.+.+..+..|..+++|++|+|++|++++.++. ++.+++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 357778888877766555 6778888888888888888766666788888888888888888776653 77888888888
Q ss_pred cCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhh--cccccCcEEEccCccccccCCccC--------------
Q 002250 115 LNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEV--LKLEKLYWLYLTNCSVTGQIPEGI-------------- 178 (947)
Q Consensus 115 L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~~-------------- 178 (947)
|++|.+++..+ ..+.++++|++|+|++|.++... +..+ ..+++|++|++++|.+++..|..+
T Consensus 128 Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 128 LSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp CCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC
T ss_pred CCCCcccccCc-hhhcccccCCEEEccCCcccccC-HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc
Confidence 88888876554 56777888888888888776532 2222 234566666666666665555443
Q ss_pred -------------------------------------CCCC--CCCEEECcCcccccccCccccCCCCCcEEEeeccccc
Q 002250 179 -------------------------------------GNLT--QLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLS 219 (947)
Q Consensus 179 -------------------------------------~~l~--~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~ 219 (947)
..++ +|++|+|++|++++..|..|..+++|++|+|++|.++
T Consensus 206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 3332 2555555555555555555555555555555555555
Q ss_pred ccCCccCCCCCCccEEeccCCCCCC------CCc----cccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccc
Q 002250 220 GRLPVGFSNLTNLMNFDVSQNRLEG------DLS----ELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRL 289 (947)
Q Consensus 220 ~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~----~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 289 (947)
+..|..|..+++|++|++++|...+ .+. .+..+++|++|++++|++++..+..|..+++|++|++++|.+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 5555555555555555555543332 111 355667777777778877777777777788888888887765
Q ss_pred cc--cCCcCccCc--ccccccccccccccCCCCCCcccCCccceeeecccccCCcCC-ccccCCCCccEEEccccccccc
Q 002250 290 TG--TLPQKLGSW--ADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVP-ETYANCKSLIRFRVNNNSLSGT 364 (947)
Q Consensus 290 ~~--~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~ 364 (947)
+. ..+..+..+ ++|+.|++++|++++..|..+..+.+|+.|++.+|.+.+.+| ..|.++++|+.|++++|++.+.
T Consensus 366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 445 (680)
T 1ziw_A 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445 (680)
T ss_dssp CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC
T ss_pred hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee
Confidence 42 122233332 478888888899988888899999999999999999998776 7899999999999999999988
Q ss_pred CCCCCCCCCCcceeccccCCcC--CCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCC----
Q 002250 365 IPPGIWSLPNLSIIDLSTNQFE--GPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIP---- 438 (947)
Q Consensus 365 ~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p---- 438 (947)
.+..|..+++|+.|++++|.+. +..|..|..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+
T Consensus 446 ~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred ChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc
Confidence 8999999999999999999997 5678899999999999999999998888889999999999999999986422
Q ss_pred ----cccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc
Q 002250 439 ----LDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT 514 (947)
Q Consensus 439 ----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 514 (947)
..|+++++|+.|+|++|+++...+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++.+|..+.
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 2478999999999999999976667899999999999999999977777889999999999999999998887664
Q ss_pred --ccccceeeCCCCcCCCCCC
Q 002250 515 --YPKLSLLDLSNNQLAGPIP 533 (947)
Q Consensus 515 --~~~L~~L~ls~N~l~~~~p 533 (947)
+++|+.|++++|++.+..+
T Consensus 606 ~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHTTCSEEECTTCCCCBCCC
T ss_pred ccccccCEEEccCCCcccCCc
Confidence 6899999999999998765
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.4e-54 Score=521.73 Aligned_cols=506 Identities=20% Similarity=0.254 Sum_probs=298.1
Q ss_pred CcccccccCCccccccccCCC-----CC--ccc------------ceeeeCCCCceeEeccCCCccccccCcccccCCcc
Q 002250 2 NLKSKIEKSDTGVFSSWTEAN-----SV--CKF------------NGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQA 62 (947)
Q Consensus 2 ~~k~~~~~~~~~~~~sw~~~~-----~~--C~w------------~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~ 62 (947)
.||.++ +++ +|+.+. +| |.| .||+|+.+|+|+.|+|+++++.|.+| +++++|++
T Consensus 276 ~~k~~l--~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip-~~l~~L~~ 348 (876)
T 4ecn_A 276 AIWEAL--DGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTE 348 (876)
T ss_dssp HHHHHT--TGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC-GGGGGCTT
T ss_pred HHHHHc--CCC----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc-hHHhcccc
Confidence 466666 333 897554 55 999 99999988999999999999999998 78999999
Q ss_pred cceeec-cCccccCcCchhhhcC----CCcc--EEeC----------cCccCcCC------------CCCccccccccee
Q 002250 63 LQKINL-GTNFLYGTITEGLKSC----TRLQ--VLDL----------GNNSFSGE------------VPDLSMLHELSFL 113 (947)
Q Consensus 63 L~~L~L-~~n~i~~~~~~~l~~l----~~L~--~L~L----------s~n~i~~~------------~~~l~~l~~L~~L 113 (947)
|+.|+| ++|.+.|..|-..... ..++ .+.. ....+.+. .........++.+
T Consensus 349 L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l 428 (876)
T 4ecn_A 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428 (876)
T ss_dssp CCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTT
T ss_pred ceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhc
Confidence 999999 8888877744221111 0000 0000 00000000 0001112233333
Q ss_pred ecCC--CCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCC--CCCCCCEEEC
Q 002250 114 NLNS--SGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIG--NLTQLQNLEL 189 (947)
Q Consensus 114 ~L~~--n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L 189 (947)
.+.. |++++ +| ..+.++++|++|+|++|.++...++... +..+.|.+.+.+|..++ ++++|++|+|
T Consensus 429 ~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~--------~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 429 QIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAVDW--------EDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp TTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSC--------SCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred eeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCcccccc--------cccccccccccCChhhhhccCCCCCEEEC
Confidence 3333 55555 45 4566666666666666666541111100 11112333334666655 6666666666
Q ss_pred cCcccccccCccccCCCCCcEEEeeccc-ccc-cCCccCCCC-------CCccEEeccCCCCCCCCc--cccccCCCCEE
Q 002250 190 SDNELFGEIPAGIVKLNKLWQLELYNNS-LSG-RLPVGFSNL-------TNLMNFDVSQNRLEGDLS--ELRFLNQLSSL 258 (947)
Q Consensus 190 s~N~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~--~l~~l~~L~~L 258 (947)
++|.+.+.+|..|.++++|++|+|++|+ +++ .+|..+..+ ++|++|+|++|+++.++. .+..+++|+.|
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEE
Confidence 6666666666666666666666666666 665 555544333 366666666666665554 46666666666
Q ss_pred EccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccc-ccccccccccccCCCCCCcccCCccceeeeccccc
Q 002250 259 HLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWAD-FNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNF 337 (947)
Q Consensus 259 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~ 337 (947)
+|++|+++ .+| .|+.+++|++|+|++|+++ .+|..+..+++ |+.|+|++|.++ .+|..+.....
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~----------- 643 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV----------- 643 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS-----------
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc-----------
Confidence 66666666 555 5666666666666666666 56666666666 666666666665 34433322211
Q ss_pred CCcCCccccCCCCccEEEcccccccccCCCCC---C--CCCCcceeccccCCcCCCCCCcccccccccEEEccCcccccc
Q 002250 338 NGTVPETYANCKSLIRFRVNNNSLSGTIPPGI---W--SLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGE 412 (947)
Q Consensus 338 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 412 (947)
++|+.|++++|.+.+.+|... . .+++|+.|+|++|+++..++..+..+++|+.|+|++|+|+ .
T Consensus 644 -----------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 644 -----------YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp -----------SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred -----------CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-c
Confidence 225555555555554433211 1 2235666666666666433333445566666666666665 4
Q ss_pred CCCCCCCC--------CcceEEEcccCcccCCCCcccc--cccccchhhccccccCCCCCcccccccccceeeccC----
Q 002250 413 LPSKISEA--------SSLVSIQLSLNQFSGQIPLDIG--KLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQ---- 478 (947)
Q Consensus 413 ~p~~~~~l--------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~---- 478 (947)
+|..+... ++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|++++ +|..++.+++|+.|+|++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 44433322 26666666666666 5566665 66666666666666665 566666666666666654
Q ss_pred --ceeeeecCCCCCccCcCcEEECCCCccCCccCCcccccccceeeCCCCcCCCCCCCccc--ccccccccccCCCCC--
Q 002250 479 --NSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLTYPKLSLLDLSNNQLAGPIPEPLN--IKAFIDSFTGNPGLC-- 552 (947)
Q Consensus 479 --N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~p~~~~--~~~~~~~~~gN~~~c-- 552 (947)
|++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+. .......+.+|++.|
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~ 867 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-CCCCEEECCCCCCCccChHHccccccchheeecCCCccccC
Confidence 778888888888888888888888888 57776644 6888888888888765544332 112233455666554
Q ss_pred CCC
Q 002250 553 SKT 555 (947)
Q Consensus 553 ~~~ 555 (947)
+|+
T Consensus 868 gC~ 870 (876)
T 4ecn_A 868 GCD 870 (876)
T ss_dssp SCG
T ss_pred CCC
Confidence 665
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.6e-52 Score=496.75 Aligned_cols=463 Identities=19% Similarity=0.186 Sum_probs=408.2
Q ss_pred CccEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEE
Q 002250 86 RLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLY 164 (947)
Q Consensus 86 ~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ 164 (947)
++++|||++|.|++.++ .+..+++|++|+|++|++.+..| .+|.++++|++|+|++|.+... .|..+.++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCccccc-ChhhhcccccccEee
Confidence 78999999999998766 59999999999999999987666 7899999999999999999764 367899999999999
Q ss_pred ccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCcc--EEeccCCCC
Q 002250 165 LTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLM--NFDVSQNRL 242 (947)
Q Consensus 165 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~Ls~N~l 242 (947)
+++|.+++..|..++++++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..|..+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999987788999999999999999999875555666699999999999999988888999999999 999999999
Q ss_pred CCCCccccccCCCCEEEccCccCc--------------------------ccCCCCccCCC--cCcEEEccCccccccCC
Q 002250 243 EGDLSELRFLNQLSSLHLFENQFS--------------------------GEIPEEFGEFK--HLTELSLYTNRLTGTLP 294 (947)
Q Consensus 243 ~~~~~~l~~l~~L~~L~L~~N~i~--------------------------~~~~~~~~~l~--~L~~L~L~~N~l~~~~p 294 (947)
++.++......+|+.|++++|... ...+..|..+. +|++|++++|.+++..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 987776666678999999887511 11122233332 79999999999998888
Q ss_pred cCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCC-CCCCCC
Q 002250 295 QKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPP-GIWSLP 373 (947)
Q Consensus 295 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~ 373 (947)
..|+.+++|++|++++|.++ .+|..+..+..|+.|++.+|.+.+..|..+..+++|+.|++++|.+.+.+|. .+..++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 88999999999999999999 7899999999999999999999999999999999999999999999877765 488999
Q ss_pred CcceeccccCCcCCCC--CCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcc-cccccccchh
Q 002250 374 NLSIIDLSTNQFEGPV--TDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLD-IGKLKKLSSL 450 (947)
Q Consensus 374 ~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L 450 (947)
+|++|++++|++++.. +..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|.. +..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 9999999999999776 778999999999999999999899999999999999999999999876654 8999999999
Q ss_pred hccccccCCCCCcccccccccceeeccCceeeee---cCCCCCccCcCcEEECCCCccCCccCCccc-ccccceeeCCCC
Q 002250 451 YLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGK---IPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNN 526 (947)
Q Consensus 451 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N 526 (947)
+|++|.+++..|..|+.+++|++|+|++|++++. .+..+..+++|+.|+|++|++++.+|..+. +++|+.|+|++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 9999999999999999999999999999999862 336789999999999999999999888775 699999999999
Q ss_pred cCCCCCCCcccc-cccccccccCCCC
Q 002250 527 QLAGPIPEPLNI-KAFIDSFTGNPGL 551 (947)
Q Consensus 527 ~l~~~~p~~~~~-~~~~~~~~gN~~~ 551 (947)
++++.+|+.+.. ......+.+|...
T Consensus 511 ~l~~~~~~~l~~l~~L~L~L~~N~l~ 536 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGIYLNLASNHIS 536 (606)
T ss_dssp CCCGGGGGGGTTCCSCEEECCSSCCC
T ss_pred ccCcCChhHhCcccccEEECcCCccc
Confidence 999988876641 1113445666543
No 12
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=7.6e-53 Score=454.22 Aligned_cols=259 Identities=24% Similarity=0.351 Sum_probs=213.8
Q ss_pred hccCCcccccccCceeEEEEEeC------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV 702 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 702 (947)
..+++.+.||+|+||+||+|++. +++.||||++.... .....++|.+|+.++++++||
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~----------------~~~~~~~f~~E~~il~~l~Hp 89 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA----------------EGPLREEFRHEAMLRARLQHP 89 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C----------------CC-CHHHHHHHHHHHHHCCCT
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc----------------ChHHHHHHHHHHHHHHhCCCC
Confidence 45667889999999999999863 46789999984221 123457899999999999999
Q ss_pred ccceEEEEEecCCccEEEEeccCCCChHHHhhhcC--------------CccCCHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH--------------KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPV 768 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~i 768 (947)
|||+++|+|.+++..++||||+++|+|.+++.... ...++|..+..++.|||+||+||| +++|
T Consensus 90 NIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~i 166 (308)
T 4gt4_A 90 NVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHV 166 (308)
T ss_dssp TBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTC
T ss_pred CCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCC
Confidence 99999999999999999999999999999997532 245899999999999999999999 8999
Q ss_pred EeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCC
Q 002250 769 IHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKR 847 (947)
Q Consensus 769 vH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~ 847 (947)
|||||||+|||+++++.+||+|||+|+...............||++|||||++.++.|+.++|||||||++|||+| |+.
T Consensus 167 iHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~ 246 (308)
T 4gt4_A 167 VHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQ 246 (308)
T ss_dssp CCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCC
Confidence 9999999999999999999999999987665544444445679999999999999999999999999999999999 899
Q ss_pred CCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 848 PIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 848 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
||... ...++...+. +....+.+.+++..+.+++.+||+.||++||||.||+++|+++.
T Consensus 247 Pf~~~--~~~~~~~~i~-------------~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 247 PYCGY--SNQDVVEMIR-------------NRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp TTTTC--CHHHHHHHHH-------------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred CCCCC--CHHHHHHHHH-------------cCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence 98532 1222222221 11122334456677999999999999999999999999999764
No 13
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.2e-52 Score=457.25 Aligned_cols=264 Identities=23% Similarity=0.334 Sum_probs=207.0
Q ss_pred hccCCcccccccCceeEEEEEeC------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV 702 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 702 (947)
++|.+.+.||+|+||+||+|+++ +++.||||++... .....++|.+|++++++++||
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-----------------~~~~~~~f~~E~~il~~l~Hp 103 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-----------------SESARQDFQREAELLTMLQHQ 103 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC-----------------SHHHHHHHHHHHHHHTTCCCT
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC-----------------CHHHHHHHHHHHHHHHhCCCC
Confidence 45667789999999999999864 4788999998421 112346799999999999999
Q ss_pred ccceEEEEEecCCccEEEEeccCCCChHHHhhhcC-------------CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH-------------KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVI 769 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~-------------~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~iv 769 (947)
|||+++|+|.+++..|+||||+++|+|.++++... ..+++|..++.++.|||+||+||| +++||
T Consensus 104 nIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~ii 180 (329)
T 4aoj_A 104 HIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFV 180 (329)
T ss_dssp TBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCC
T ss_pred CCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCee
Confidence 99999999999999999999999999999997642 246899999999999999999999 89999
Q ss_pred eccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCC
Q 002250 770 HRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRP 848 (947)
Q Consensus 770 H~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p 848 (947)
||||||+|||+++++.+||+|||+|+...............||++|||||++.+..|+.++|||||||++|||+| |+.|
T Consensus 181 HRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~P 260 (329)
T 4aoj_A 181 HRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP 260 (329)
T ss_dssp CSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred cccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCC
Confidence 999999999999999999999999987655544444445679999999999999999999999999999999999 8999
Q ss_pred CCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCCcce
Q 002250 849 IVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCSVTN 927 (947)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~~~~ 927 (947)
|... ...++...+ .... ..+.+..++..+.+++.+||+.||++||||.||+++|+.+...|+..
T Consensus 261 f~~~--~~~~~~~~i---~~g~----------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp~~ 324 (329)
T 4aoj_A 261 WYQL--SNTEAIDCI---TQGR----------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVY 324 (329)
T ss_dssp TCSS--CHHHHHHHH---HHTC----------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC--
T ss_pred CCCC--CHHHHHHHH---HcCC----------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCccc
Confidence 9532 122222221 1111 11223345567899999999999999999999999999987666543
No 14
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=4.4e-53 Score=454.05 Aligned_cols=258 Identities=22% Similarity=0.375 Sum_probs=211.3
Q ss_pred hccCCcccccccCceeEEEEEeC------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV 702 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 702 (947)
++|.+.+.||+|+||+||+|++. +++.||||++... .....++|.+|++++++++||
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-----------------~~~~~~~f~~E~~il~~l~Hp 75 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-----------------SDNARKDFHREAELLTNLQHE 75 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC-----------------CHHHHHHHHHHHHHHTTCCCT
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC-----------------ChHHHHHHHHHHHHHHhCCCC
Confidence 56778899999999999999864 4778999998421 112346799999999999999
Q ss_pred ccceEEEEEecCCccEEEEeccCCCChHHHhhhcC-----------CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEec
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH-----------KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHR 771 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~-----------~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~ 771 (947)
|||+++|+|.+++..|+||||+++|+|.++++..+ ...++|..+..++.|||+||+||| +++||||
T Consensus 76 nIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHR 152 (299)
T 4asz_A 76 HIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHR 152 (299)
T ss_dssp TBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCS
T ss_pred CCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccC
Confidence 99999999999999999999999999999998642 356899999999999999999999 8999999
Q ss_pred cCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCC
Q 002250 772 DVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIV 850 (947)
Q Consensus 772 Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~ 850 (947)
||||+|||+++++.+||+|||+|+...............||++|||||++.+..|+.++|||||||++|||+| |+.||.
T Consensus 153 DlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~ 232 (299)
T 4asz_A 153 DLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWY 232 (299)
T ss_dssp CCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred ccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999987655443333334569999999999999999999999999999999999 899995
Q ss_pred CCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 851 PEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
.. ...++...+ .. ....+.+..++..+.+++.+||+.||++||||.||.+.|+++.
T Consensus 233 ~~--~~~~~~~~i---~~----------~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~ 288 (299)
T 4asz_A 233 QL--SNNEVIECI---TQ----------GRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLA 288 (299)
T ss_dssp TS--CHHHHHHHH---HH----------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHH---Hc----------CCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 32 122222221 11 1112233445667899999999999999999999999998764
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-50 Score=496.74 Aligned_cols=484 Identities=21% Similarity=0.220 Sum_probs=423.1
Q ss_pred CceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-C--cccccccce
Q 002250 36 GLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-D--LSMLHELSF 112 (947)
Q Consensus 36 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~--l~~l~~L~~ 112 (947)
.+...|+|++++..+.+++.+|.++++|+.|+|++|.|.+..|+.|..+++|++|+|++|.+++..+ . +..+++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 4688999999988888877899999999999999999999999999999999999999999998544 3 899999999
Q ss_pred eecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhccc--ccCcEEEccCccccccCCccCCCCCC------C
Q 002250 113 LNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKL--EKLYWLYLTNCSVTGQIPEGIGNLTQ------L 184 (947)
Q Consensus 113 L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~------L 184 (947)
|+|++|.+.+..+...|.++++|++|+|++|.+... .+..+..+ ++|+.|++++|.+.+..|..++.+++ |
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 999999998776656899999999999999999765 36667777 89999999999999988888877766 9
Q ss_pred CEEECcCcccccccCccccCC---CCCcEEEeecc---------cccccCCccCCCC--CCccEEeccCCCCCCCC-ccc
Q 002250 185 QNLELSDNELFGEIPAGIVKL---NKLWQLELYNN---------SLSGRLPVGFSNL--TNLMNFDVSQNRLEGDL-SEL 249 (947)
Q Consensus 185 ~~L~Ls~N~l~~~~~~~l~~l---~~L~~L~L~~n---------~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~-~~l 249 (947)
++|+|++|.+++..+..+... .+++.|.++++ .+.+..+..|..+ ++|+.|+|++|.+.+.. ..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 999999999988888877654 57888988743 3444444556655 78999999999998754 458
Q ss_pred cccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccce
Q 002250 250 RFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTD 329 (947)
Q Consensus 250 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~ 329 (947)
..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|.+++..+..+..+.+|+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 88999999999999999999999999999999999999999888999999999999999999999888888999999999
Q ss_pred eeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCC-CcccccccccEEEccCcc
Q 002250 330 LLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVT-DDIGNAKSLALLLLANNR 408 (947)
Q Consensus 330 L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 408 (947)
|++.+|.+.+. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++... ..+..+++|+.|+|++|+
T Consensus 367 L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 367 LDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp EEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 99999998753 33789999999999998 55554 4679999999999997533 235688999999999999
Q ss_pred ccccCCC-CCCCCCcceEEEcccCccc-----CCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceee
Q 002250 409 FSGELPS-KISEASSLVSIQLSLNQFS-----GQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLS 482 (947)
Q Consensus 409 l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 482 (947)
+++..+. .+..+++|+.|+|++|.++ +..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|+
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC
Confidence 9965443 4667899999999999997 445567899999999999999999999999999999999999999999
Q ss_pred eecCCCCCccCcCcEEECCCCccCCccCCcccccccceeeCCCCcCCCCCC
Q 002250 483 GKIPDSLGSLPSLNSLNLSNNKFSGEIPISLTYPKLSLLDLSNNQLAGPIP 533 (947)
Q Consensus 483 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~p 533 (947)
+..|..+. ++|+.|+|++|+|++.+|..+ .+|+.|++++|++.+..+
T Consensus 518 ~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 518 VLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSCCEEEEEEECCCCSSS
T ss_pred ccChhhhh--ccccEEECCCCcCCCCChhHh--CCcCEEEecCCCcccccc
Confidence 87777666 899999999999999999765 489999999999988665
No 16
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1e-51 Score=443.13 Aligned_cols=261 Identities=29% Similarity=0.440 Sum_probs=204.5
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
+++++.+.||+|+||+||+|+++ ..||||+++... ......+.|.+|+.++++++|||||+++
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~---------------~~~~~~~~f~~E~~il~~l~HpNIV~l~ 98 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVD---------------PTPEQFQAFRNEVAVLRKTRHVNILLFM 98 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSS---------------CCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecC---------------CCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence 56778899999999999999976 369999984211 1113346799999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
|++.+ +..++||||+++|+|.++++.. ...++|..+..++.|||+||+||| +++||||||||+|||+++++.+||
T Consensus 99 g~~~~-~~~~iVmEy~~gGsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki 173 (307)
T 3omv_A 99 GYMTK-DNLAIVTQWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKI 173 (307)
T ss_dssp EEECS-SSCEEEEECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEE
T ss_pred EEEEC-CeEEEEEEcCCCCCHHHHHhhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEE
Confidence 99865 5689999999999999999863 346999999999999999999999 889999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCcccccc---CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT---CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+|||+|+..............+||+.|||||++.. +.|+.++|||||||++|||+||+.||.... ....+...+.
T Consensus 174 ~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~-~~~~~~~~~~- 251 (307)
T 3omv_A 174 GDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHIN-NRDQIIFMVG- 251 (307)
T ss_dssp CCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC-CHHHHHHHHH-
T ss_pred eeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCC-hHHHHHHHHh-
Confidence 99999987655443333445689999999999864 458999999999999999999999995321 1111111111
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
.. ...+.+...+.+++..+.+++.+||+.||++||||.||+++|+.++
T Consensus 252 ---~~-----~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 252 ---RG-----YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp ---TT-----CCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred ---cC-----CCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence 11 1123334444556678899999999999999999999999998764
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-50 Score=482.14 Aligned_cols=463 Identities=20% Similarity=0.191 Sum_probs=346.0
Q ss_pred ccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceeecCCCCccCccCcccccccCCCceeeC
Q 002250 62 ALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSL 140 (947)
Q Consensus 62 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~L 140 (947)
+++.|+|++|.+.+..+..|..+++|++|||++|++++.++. +..+++|++|+|++|++++..+ ..|.++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCccccccccc
Confidence 456666666666655555666666666666666666654443 5566666666666666654333 45666666666666
Q ss_pred CCCCCCCCCCChhhcccccCcEEEccCccccc-cCCccCCCCCCCCEEECcCcccccccCccccCCCCC----cEEEeec
Q 002250 141 GDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTG-QIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKL----WQLELYN 215 (947)
Q Consensus 141 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L----~~L~L~~ 215 (947)
++|.++..+ +..+.++++|++|++++|.+++ .+|..|+++++|++|++++|++++..+..+..+++| +.|++++
T Consensus 108 ~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCST-TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCC-CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 666665432 1235566666666666666654 245666666666666666666665555555555555 5666666
Q ss_pred ccccccCCccCCCCCCccEEeccCCCCCC-------------------------------CC-ccccccC--CCCEEEcc
Q 002250 216 NSLSGRLPVGFSNLTNLMNFDVSQNRLEG-------------------------------DL-SELRFLN--QLSSLHLF 261 (947)
Q Consensus 216 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------------------~~-~~l~~l~--~L~~L~L~ 261 (947)
|.+++..|..|..+ +|++|++++|.... .. ..+..+. .++.++++
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 66665555555544 56666666553211 00 1122222 35667777
Q ss_pred Cc-cCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCc
Q 002250 262 EN-QFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGT 340 (947)
Q Consensus 262 ~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~ 340 (947)
+| .+.+..|..+..+++|++|++++|.++ .+|..+..+ +|+.|++++|.+. .+|. ..+..++.|.+.+|.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccc
Confidence 77 777788889999999999999999998 688888888 9999999999998 6665 4678899999999998877
Q ss_pred CCccccCCCCccEEEcccccccccC--CCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCC-CCC
Q 002250 341 VPETYANCKSLIRFRVNNNSLSGTI--PPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELP-SKI 417 (947)
Q Consensus 341 ~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~ 417 (947)
.+. ..+++|+.|++++|.+++.. |..+..+++|+.|++++|++.+..+. +..+++|+.|++++|++++..| ..+
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence 765 78899999999999998654 66788899999999999999876555 8899999999999999987766 578
Q ss_pred CCCCcceEEEcccCcccCCCCcccccccccchhhccccccC-CCCCcccccccccceeeccCceeeeecCCCCCccCcCc
Q 002250 418 SEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFS-GPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLN 496 (947)
Q Consensus 418 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 496 (947)
..+++|+.|++++|++.+..|..+.++++|+.|+|++|.++ +.+|..|+.+++|+.|+|++|++++..|..|..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 89999999999999999888999999999999999999997 57889999999999999999999988899999999999
Q ss_pred EEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCCCc
Q 002250 497 SLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIPEP 535 (947)
Q Consensus 497 ~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~~ 535 (947)
.|+|++|++++.+|..+. +++|+.|++++|++++..|..
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999988887664 689999999999999988853
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.2e-51 Score=484.42 Aligned_cols=484 Identities=18% Similarity=0.206 Sum_probs=372.5
Q ss_pred CcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC
Q 002250 24 VCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD 103 (947)
Q Consensus 24 ~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 103 (947)
.|.|.|+ ||..+ +++ ..+|. .+ .++|+.|+|++|.+.+..|..|..+++|++|+|++|++++.++.
T Consensus 3 ~C~~~~~-c~~~~---------~~l-~~ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGRS---------RSF-TSIPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECTT---------SCC-SSCCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECCC---------Ccc-ccccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4999999 98532 222 23442 22 27899999999999999999999999999999999999987764
Q ss_pred -cccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCcc-ccccCCccCCCC
Q 002250 104 -LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCS-VTGQIPEGIGNL 181 (947)
Q Consensus 104 -l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l 181 (947)
+..+++|++|+|++|++++..+ ..|.++++|++|+|++|.++..+.|..+.++++|++|++++|. +....+..|.++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hccccccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 8999999999999999986655 6799999999999999999877677788999999999999998 454445789999
Q ss_pred CCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCC----ccccccCCCCE
Q 002250 182 TQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDL----SELRFLNQLSS 257 (947)
Q Consensus 182 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~l~~l~~L~~ 257 (947)
++|++|+|++|++++..|..+..+++|++|++++|.+.......+..+++|++|++++|++++.. .....+++|+.
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 99999999999999999999999999999999999987443333567899999999999998742 23456789999
Q ss_pred EEccCccCcccCC----CCccCCCcCcEEEccCccccccC------CcCccCcccccccccccccccCC-----CCCCcc
Q 002250 258 LHLFENQFSGEIP----EEFGEFKHLTELSLYTNRLTGTL------PQKLGSWADFNYVDVSENLLTGP-----IPPDMC 322 (947)
Q Consensus 258 L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~~~------p~~l~~l~~L~~L~Ls~N~l~~~-----~p~~~~ 322 (947)
|++++|.+++..+ ..+..+++|+.+++++|.+.+.. ...+..+.+|+.|++.++.+... ++..+.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 9999999886444 34466789999999999987531 23456678888888888876531 111122
Q ss_pred cCCccceeeecccccCCcCCccc-cCCCCccEEEcccccccccCC---CCCCCCCCcceeccccCCcCCCCC--Cccccc
Q 002250 323 KTGAMTDLLVLQNNFNGTVPETY-ANCKSLIRFRVNNNSLSGTIP---PGIWSLPNLSIIDLSTNQFEGPVT--DDIGNA 396 (947)
Q Consensus 323 ~~~~l~~L~l~~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l 396 (947)
....++.|.+.+|.+. .+|..+ ..+++|+.|++++|.+++..| ..+..+++|+.|+|++|++++..+ ..+..+
T Consensus 308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 3456777888777765 555544 567888888888888876553 346777888888888888876543 457777
Q ss_pred ccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeec
Q 002250 397 KSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINF 476 (947)
Q Consensus 397 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 476 (947)
++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+. ++|++|+|++|++++.+ ..+++|++|+|
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~L 458 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYI 458 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEEC
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEEC
Confidence 88888888888887 67777777788888888888877 4444332 57788888888777643 46777888888
Q ss_pred cCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCC
Q 002250 477 AQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIP 533 (947)
Q Consensus 477 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p 533 (947)
++|+|+ .+|. ...+++|+.|+|++|++++.+|..+. +++|+.|++++|++++..|
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 888877 6665 45677788888888888877776554 5777888887777776655
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-49 Score=471.68 Aligned_cols=464 Identities=19% Similarity=0.162 Sum_probs=401.8
Q ss_pred CCccEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEE
Q 002250 85 TRLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWL 163 (947)
Q Consensus 85 ~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L 163 (947)
++++.|||++|.+++..+ .+..+++|++|+|++|++++..+ ..|.++++|++|+|++|.+...+ |..+.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCcCCccC-HhhhcCccccccc
Confidence 589999999999998766 59999999999999999986544 78999999999999999997653 5678999999999
Q ss_pred EccCccccccCCccCCCCCCCCEEECcCccccc-ccCccccCCCCCcEEEeecccccccCCccCCCCCCc----cEEecc
Q 002250 164 YLTNCSVTGQIPEGIGNLTQLQNLELSDNELFG-EIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNL----MNFDVS 238 (947)
Q Consensus 164 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~Ls 238 (947)
++++|.+++..+..++++++|++|+|++|.+++ .+|..|.++++|++|++++|++++..+..|..+++| +.|+++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999997766689999999999999999987 469999999999999999999998888889988888 899999
Q ss_pred CCCCCCCCccccccCCCCEEEccCccCc-------------------------------ccCCCCccCCC--cCcEEEcc
Q 002250 239 QNRLEGDLSELRFLNQLSSLHLFENQFS-------------------------------GEIPEEFGEFK--HLTELSLY 285 (947)
Q Consensus 239 ~N~l~~~~~~l~~l~~L~~L~L~~N~i~-------------------------------~~~~~~~~~l~--~L~~L~L~ 285 (947)
+|.+++..+......+|+.|++++|... ......+..++ .++.++++
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 9999886654444447999999988422 11122233332 35677777
Q ss_pred Cc-cccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEccccccccc
Q 002250 286 TN-RLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGT 364 (947)
Q Consensus 286 ~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 364 (947)
+| .+.+..|..+..+++|+.|++++|.++ .+|..+..+ .++.|.+.+|.+. .+|. ..+++|+.|++++|.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCB
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccc
Confidence 77 777889999999999999999999998 688888888 9999999999988 5554 5788999999999999877
Q ss_pred CCCCCCCCCCcceeccccCCcCCCC--CCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCC-ccc
Q 002250 365 IPPGIWSLPNLSIIDLSTNQFEGPV--TDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIP-LDI 441 (947)
Q Consensus 365 ~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~ 441 (947)
.+. ..+++|+.|++++|++++.. +..+..+++|++|++++|.+++..+ .+..+++|+.|++++|++.+..| ..+
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhh
Confidence 665 78999999999999998654 6778899999999999999995544 49999999999999999997766 578
Q ss_pred ccccccchhhccccccCCCCCcccccccccceeeccCceee-eecCCCCCccCcCcEEECCCCccCCccCCccc-ccccc
Q 002250 442 GKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLS-GKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLS 519 (947)
Q Consensus 442 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~ 519 (947)
.++++|++|+|++|.+.+..|..|..+++|+.|+|++|+++ +.+|..+..+++|+.|+|++|++++.+|..+. +++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 99999999999999999999999999999999999999998 68999999999999999999999999887775 69999
Q ss_pred eeeCCCCcCCCCCCCccc--ccccccccccCCCCCCCCccc
Q 002250 520 LLDLSNNQLAGPIPEPLN--IKAFIDSFTGNPGLCSKTDEY 558 (947)
Q Consensus 520 ~L~ls~N~l~~~~p~~~~--~~~~~~~~~gN~~~c~~~~~~ 558 (947)
.|++++|++++.+|..+. .......+.+||+.|+|+..+
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 999999999998887654 233455789999999988643
No 20
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1e-50 Score=441.12 Aligned_cols=253 Identities=26% Similarity=0.388 Sum_probs=204.7
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.. +|+.||||++..... .....+.+.+|++++++++|||||+
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~---------------~~~~~~~~~~E~~il~~l~HpnIV~ 87 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRM---------------SSKEREESRREVAVLANMKHPNIVQ 87 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTS---------------CHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHC---------------CHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 368999999999999999999965 799999999953211 1123467899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+++..|+||||++||+|.+++...+...+++.....++.||+.||+||| +++||||||||+|||++.++.+
T Consensus 88 ~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~v 164 (350)
T 4b9d_A 88 YRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTV 164 (350)
T ss_dssp EEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCE
T ss_pred EEEEEEECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCE
Confidence 9999999999999999999999999998766677899999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||+|+...... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||... +..+.....
T Consensus 165 Kl~DFGla~~~~~~~--~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~~~~~i 237 (350)
T 4b9d_A 165 QLGDFGIARVLNSTV--ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG-----SMKNLVLKI 237 (350)
T ss_dssp EECSTTEESCCCHHH--HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHH
T ss_pred EEcccccceeecCCc--ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHH
Confidence 999999998654321 1223467999999999999999999999999999999999999999532 233333222
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.... .++.....+..+.+++.+||+.||++|||+.|+++
T Consensus 238 ~~~~----------~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 238 ISGS----------FPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHTC----------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HcCC----------CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 2221 11222334456889999999999999999999986
No 21
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=9.4e-50 Score=426.27 Aligned_cols=251 Identities=21% Similarity=0.271 Sum_probs=209.4
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||+||+|+.. +|+.||||++... ........+.+.+|++++++++|||||++
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~--------------~~~~~~~~~~~~~E~~il~~l~HpnIv~l 97 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKR--------------HIIKENKVPYVTRERDVMSRLDHPFFVKL 97 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHTTCCCTTBCCE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHH--------------HCCCHHHHHHHHHHHHHHHhCCCCCCCeE
Confidence 57999999999999999999965 7999999998311 11123455789999999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
+++|++++..|+||||++||+|.+++.+. ..+++.....++.||+.||+||| +++|+||||||+|||++.++.+|
T Consensus 98 ~~~~~~~~~~yivmEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vK 172 (311)
T 4aw0_A 98 YFTFQDDEKLYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQ 172 (311)
T ss_dssp EEEEECSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEE
T ss_pred EEEEEeCCEEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEE
Confidence 99999999999999999999999999874 35889999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhc
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
|+|||+|+..............+||+.|||||++.+..|+.++||||+||++|||+||+.||... +..+......
T Consensus 173 l~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~~~i~ 247 (311)
T 4aw0_A 173 ITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG-----NEGLIFAKII 247 (311)
T ss_dssp ECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHH
T ss_pred EEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHH
Confidence 99999999876554444445678999999999999999999999999999999999999999532 2222222222
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHH
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVV 914 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~ 914 (947)
..... ++.....++.+++.+|++.||++|||+.|+.
T Consensus 248 ~~~~~-----------~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 248 KLEYD-----------FPEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp HTCCC-----------CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred cCCCC-----------CCcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 22211 1122334678899999999999999999874
No 22
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=8.3e-50 Score=432.13 Aligned_cols=253 Identities=24% Similarity=0.288 Sum_probs=204.6
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.+.|+..++||+|+||+||+|+.+ +|+.||||++... ....+|+.++++++|||||+
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~----------------------~~~~~E~~il~~l~HpnIV~ 114 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE----------------------VFRVEELVACAGLSSPRIVP 114 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT----------------------TCCTHHHHTTTTCCCTTBCC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHH----------------------HhHHHHHHHHHhCCCCCCCc
Confidence 456788889999999999999965 6999999998421 11246999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC-C
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW-K 785 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~-~ 785 (947)
+++++.+++..|+||||++||+|.++++.. ..+++.....++.||+.||+||| +++||||||||+|||++.++ .
T Consensus 115 l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~ 189 (336)
T 4g3f_A 115 LYGAVREGPWVNIFMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSR 189 (336)
T ss_dssp EEEEEEETTEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCC
T ss_pred EEEEEEECCEEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCE
Confidence 999999999999999999999999999874 35899999999999999999999 89999999999999999987 5
Q ss_pred eEEeccccceecccCCCCc---ceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Q 002250 786 PRIADFGLAKIVQTGEAGD---LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 862 (947)
+||+|||+|+......... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||...... .-....
T Consensus 190 vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~-~~~~~i 268 (336)
T 4g3f_A 190 AALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRG-PLCLKI 268 (336)
T ss_dssp EEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCS-CCHHHH
T ss_pred EEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH-HHHHHH
Confidence 9999999998775443211 223457999999999999999999999999999999999999999654321 111111
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
. ... +...+.+...+..+.+++.+||+.||++|||+.|++++|..+
T Consensus 269 ~----~~~--------~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 269 A----SEP--------PPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp H----HSC--------CGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred H----cCC--------CCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence 1 111 111223344556788999999999999999999999887753
No 23
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=5.7e-49 Score=426.75 Aligned_cols=250 Identities=26% Similarity=0.359 Sum_probs=206.7
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
+.|+..+.||+|+||+||+|+.+ +|+.||||++.. ......+.+.+|+.++++++|||||++
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~-----------------~~~~~~~~~~~Ei~il~~l~HpnIV~l 136 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDL-----------------RKQQRRELLFNEVVIMRDYQHENVVEM 136 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEG-----------------GGCSSGGGGHHHHHHHHHCCCTTBCCE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEec-----------------CchhHHHHHHHHHHHHHhCCCCCCCcE
Confidence 56888899999999999999975 799999999831 122345678899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
+++|.+++..|+||||+++|+|.+++.. ..+++.....++.||+.||+||| +++||||||||+|||++.++.+|
T Consensus 137 ~~~~~~~~~~~ivmEy~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vK 210 (346)
T 4fih_A 137 YNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVK 210 (346)
T ss_dssp EEEEEETTEEEEEECCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEE
T ss_pred EEEEEECCEEEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEE
Confidence 9999999999999999999999999976 35899999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhc
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
|+|||+|+....... .....+||+.|||||++.+..|+.++||||+||++|||++|+.||... +..+......
T Consensus 211 l~DFGla~~~~~~~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~~~i~ 283 (346)
T 4fih_A 211 LSDFGFCAQVSKEVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPLKAMKMIR 283 (346)
T ss_dssp ECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHH
T ss_pred EecCcCceecCCCCC--cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHH
Confidence 999999987654332 233568999999999999999999999999999999999999999532 2222222111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.... +.+ +........+.+++.+||..||++|||+.|++++
T Consensus 284 ~~~~-------~~~-~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 284 DNLP-------PRL-KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp HSSC-------CCC-SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred cCCC-------CCC-CccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1110 111 1122334568889999999999999999999874
No 24
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.1e-49 Score=426.63 Aligned_cols=270 Identities=25% Similarity=0.279 Sum_probs=203.3
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|.+.+.||+|+||+||+|+++ |+.||||++.. .......+++|+..+.+++|||||++
T Consensus 2 ar~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~------------------~~~~~~~~e~Ei~~~~~l~HpNIv~l 62 (303)
T 3hmm_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSS------------------REERSWFREAEIYQTVMLRHENILGF 62 (303)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECG------------------GGHHHHHHHHHHHTSTTCCCTTBCCE
T ss_pred CcEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECc------------------cchhhHHHHHHHHHHhcCCCCCCCcE
Confidence 356778899999999999999985 89999999831 01112234567777788999999999
Q ss_pred EEEEecCC----ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEeccCCCCCe
Q 002250 708 YCSITSED----SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHG-----FDRPVIHRDVKSSNI 778 (947)
Q Consensus 708 ~~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~-----~~~~ivH~Dlkp~NI 778 (947)
+|++.+++ ..|+||||+++|+|.++++. ..++|..+.+++.|+|+||+|||+. +.++||||||||+||
T Consensus 63 ~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NI 139 (303)
T 3hmm_A 63 IAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNI 139 (303)
T ss_dssp EEEEEEECSSSEEEEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGE
T ss_pred EEEEEecCCCceEEEEEecCCCCCcHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccE
Confidence 99998764 46899999999999999986 3589999999999999999999932 134999999999999
Q ss_pred EecCCCCeEEeccccceecccCCCC--cceecccccccccCccccccC------CCCCccchHHHHHHHHHHHhCCCCCC
Q 002250 779 LLDLEWKPRIADFGLAKIVQTGEAG--DLTHVIAGTHGYIAPEYAYTC------KINEKSDVYSFGVVLMELVTGKRPIV 850 (947)
Q Consensus 779 ll~~~~~~kl~DfG~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slGv~l~elltg~~p~~ 850 (947)
|++.++.+||+|||+|+........ ......+||++|||||++.+. .++.++|||||||++|||+||+.||.
T Consensus 140 Ll~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~ 219 (303)
T 3hmm_A 140 LVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGG 219 (303)
T ss_dssp EECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTT
T ss_pred EECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCC
Confidence 9999999999999999876554321 122345799999999998754 36779999999999999999988764
Q ss_pred CCCC----------CcccHHHHHHhhccccccccccccCCCCcc--CHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 002250 851 PEFG----------DSKDIVNWVYSKMDSRDSMLTVVDPNISEI--LKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLE 918 (947)
Q Consensus 851 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~ 918 (947)
.... .............. ...++.++.. ..+.+..+.+++.+||+.||++||||.||+++|+
T Consensus 220 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 293 (303)
T 3hmm_A 220 IHEDYQLPYYDLVPSDPSVEEMRKVVCE------QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 293 (303)
T ss_dssp BCCCCCCTTTTTSCSSCCHHHHHHHHTT------SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHH
T ss_pred ccccccccchhcccccchHHHHHHHHhc------ccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHH
Confidence 3211 11111121111111 1122333222 2356678999999999999999999999999999
Q ss_pred ccCCCCc
Q 002250 919 EAEPCSV 925 (947)
Q Consensus 919 ~~~~~~~ 925 (947)
++....+
T Consensus 294 ~l~~~~~ 300 (303)
T 3hmm_A 294 QLSQQEG 300 (303)
T ss_dssp HHHHC--
T ss_pred HHHHHcC
Confidence 8765543
No 25
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=8.6e-50 Score=438.01 Aligned_cols=260 Identities=24% Similarity=0.307 Sum_probs=211.2
Q ss_pred hhccCCcccccccCceeEEEEEeCC------CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNS------GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH 701 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 701 (947)
.++|++.+.||+|+||+||+|++.. ++.||||++.... .....+.|.+|++++++++|
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~----------------~~~~~~~~~~E~~il~~l~h 126 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----------------THSEHRALMSELKILIHIGH 126 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC----------------CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEcccc----------------ChHHHHHHHHHHHHHHHcCC
Confidence 3678999999999999999998542 3679999984221 11234678999999999976
Q ss_pred -cccceEEEEEecC-CccEEEEeccCCCChHHHhhhcC--------------CccCCHHHHHHHHHHHHHHHHHHhcCCC
Q 002250 702 -VNVVKLYCSITSE-DSNLLVYEYLPNGSLWDRLHTCH--------------KIEMDWVVRYAIAVGAAKGLEYLHHGFD 765 (947)
Q Consensus 702 -~niv~l~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~i~~~ia~~l~yLH~~~~ 765 (947)
||||+++|+|.++ +..++||||+++|+|.++++... ...++|..+..++.|||+||+||| +
T Consensus 127 hpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~ 203 (353)
T 4ase_A 127 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---S 203 (353)
T ss_dssp CTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---H
T ss_pred CCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---h
Confidence 8999999999764 56899999999999999997642 235899999999999999999999 8
Q ss_pred CCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-
Q 002250 766 RPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT- 844 (947)
Q Consensus 766 ~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt- 844 (947)
++||||||||+|||+++++.+||+|||+|+...............||++|||||++.+..|+.++|||||||++|||+|
T Consensus 204 ~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~ 283 (353)
T 4ase_A 204 RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSL 283 (353)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhC
Confidence 9999999999999999999999999999997765544444445679999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 845 GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 845 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
|+.||.... ....+...+... . ..+.+..++.++.+++.+||+.||++||||.|++++|+++
T Consensus 284 G~~Pf~~~~-~~~~~~~~i~~g----~---------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 284 GASPYPGVK-IDEEFCRRLKEG----T---------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp SCCSSTTCC-CSHHHHHHHHHT----C---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCCC-HHHHHHHHHHcC----C---------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 899985432 122222222111 1 1122333456788999999999999999999999999875
No 26
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-48 Score=415.98 Aligned_cols=247 Identities=27% Similarity=0.378 Sum_probs=194.8
Q ss_pred CCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEEEE
Q 002250 632 KPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLYCS 710 (947)
Q Consensus 632 ~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~ 710 (947)
++.+.||+|+||+||+|... +++.||||++.... ......+.|.+|++++++++|||||+++++
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~---------------~~~~~~~~~~~E~~il~~l~HpnIV~~~~~ 93 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRK---------------LTKSERQRFKEEAEMLKGLQHPNIVRFYDS 93 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG---------------SCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhh---------------CCHHHHHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 56678999999999999965 68999999984211 111234679999999999999999999999
Q ss_pred Eec----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEeccCCCCCeEec-CC
Q 002250 711 ITS----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRP--VIHRDVKSSNILLD-LE 783 (947)
Q Consensus 711 ~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~--ivH~Dlkp~NIll~-~~ 783 (947)
|.. +...|+||||+++|+|.+++++. ..+++.....++.||+.||+||| +++ ||||||||+|||++ .+
T Consensus 94 ~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~ 168 (290)
T 3fpq_A 94 WESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPT 168 (290)
T ss_dssp EEEEETTEEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTT
T ss_pred EeeccCCCcEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCC
Confidence 865 34579999999999999999874 45899999999999999999999 666 99999999999998 47
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
+.+||+|||+|+..... .....+||+.|||||++.+ .|+.++|||||||++|||+||+.||... .......
T Consensus 169 g~vKl~DFGla~~~~~~----~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~----~~~~~~~ 239 (290)
T 3fpq_A 169 GSVKIGDLGLATLKRAS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIY 239 (290)
T ss_dssp SCEEECCTTGGGGCCTT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC----SSHHHHH
T ss_pred CCEEEEeCcCCEeCCCC----ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC----CcHHHHH
Confidence 99999999999754322 2335689999999998864 6999999999999999999999999532 1222221
Q ss_pred HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 864 YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 864 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
. .+..... . ...+...++++.+++.+||+.||++|||+.|++++
T Consensus 240 ~-~i~~~~~-~-------~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 240 R-RVTSGVK-P-------ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp H-HHTTTCC-C-------GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred H-HHHcCCC-C-------CCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 1 1111110 0 11112223457889999999999999999999863
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-48 Score=460.28 Aligned_cols=475 Identities=22% Similarity=0.225 Sum_probs=394.2
Q ss_pred eeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCceeeCCCCC
Q 002250 66 INLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNP 144 (947)
Q Consensus 66 L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~ 144 (947)
.+.++++++ .+|..+. ++|++|+|++|++++.++ .+..+++|++|+|++|++++..+ ..|.++++|++|+|++|.
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCc
Confidence 466778884 4555443 799999999999998765 59999999999999999996655 789999999999999999
Q ss_pred CCCCCCChhhcccccCcEEEccCcccccc-CCccCCCCCCCCEEECcCccccccc-CccccCCCCCcEEEeecccccccC
Q 002250 145 FDPSPFPMEVLKLEKLYWLYLTNCSVTGQ-IPEGIGNLTQLQNLELSDNELFGEI-PAGIVKLNKLWQLELYNNSLSGRL 222 (947)
Q Consensus 145 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~ 222 (947)
+...+ +..+.++++|++|++++|.+++. .|..++++++|++|+|++|++.+.+ +..|.++++|++|++++|.+++..
T Consensus 86 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 86 LSSLS-SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CCSCC-HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCccC-HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 98643 45589999999999999999963 5778999999999999999844444 468999999999999999999999
Q ss_pred CccCCCCCCccEEeccCCCCCCCCccc-cccCCCCEEEccCccCcccC--C-CCccCCCcCcEEEccCccccccCC----
Q 002250 223 PVGFSNLTNLMNFDVSQNRLEGDLSEL-RFLNQLSSLHLFENQFSGEI--P-EEFGEFKHLTELSLYTNRLTGTLP---- 294 (947)
Q Consensus 223 ~~~~~~l~~L~~L~Ls~N~l~~~~~~l-~~l~~L~~L~L~~N~i~~~~--~-~~~~~l~~L~~L~L~~N~l~~~~p---- 294 (947)
|..+..+++|++|+++.|.+...+..+ ..+++|+.|++++|++++.. | .....+++|+.|++++|.+++..+
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 999999999999999999987655543 56899999999999998642 2 233457899999999999986544
Q ss_pred cCccCcccccccccccccccCCC------CCCcccCCccceeeecccccCCc-----CCccccCCCCccEEEcccccccc
Q 002250 295 QKLGSWADFNYVDVSENLLTGPI------PPDMCKTGAMTDLLVLQNNFNGT-----VPETYANCKSLIRFRVNNNSLSG 363 (947)
Q Consensus 295 ~~l~~l~~L~~L~Ls~N~l~~~~------p~~~~~~~~l~~L~l~~n~~~~~-----~p~~~~~l~~L~~L~L~~n~l~~ 363 (947)
..+..+++|+.+++++|.+.+.. ...+..+..++.|.+.++.+... ++..+....+|+.|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 44567889999999999987632 12345677888999888876532 2233445678999999999998
Q ss_pred cCCCCC-CCCCCcceeccccCCcCCCCC---CcccccccccEEEccCccccccCC--CCCCCCCcceEEEcccCcccCCC
Q 002250 364 TIPPGI-WSLPNLSIIDLSTNQFEGPVT---DDIGNAKSLALLLLANNRFSGELP--SKISEASSLVSIQLSLNQFSGQI 437 (947)
Q Consensus 364 ~~p~~~-~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~ 437 (947)
.+|..+ ..+++|++|+|++|++.+..+ ..++.+++|++|++++|++++..+ ..+..+++|+.|++++|+++ .+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 402 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence 677666 479999999999999997653 447889999999999999985432 45889999999999999999 78
Q ss_pred CcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCcccccc
Q 002250 438 PLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLTYPK 517 (947)
Q Consensus 438 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 517 (947)
|..++.+++|++|+|++|++++ +|..+ .++|+.|+|++|+|++.+ ..+++|+.|+|++|+|+ .+|....+++
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~ 474 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPV 474 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTT
T ss_pred ChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCcc
Confidence 8899999999999999999984 44443 268999999999999643 57899999999999999 6676556799
Q ss_pred cceeeCCCCcCCCCCCCccc--ccccccccccCCCCCCCC
Q 002250 518 LSLLDLSNNQLAGPIPEPLN--IKAFIDSFTGNPGLCSKT 555 (947)
Q Consensus 518 L~~L~ls~N~l~~~~p~~~~--~~~~~~~~~gN~~~c~~~ 555 (947)
|+.|||++|++++.+|+.+. .......+.+|||.|+|+
T Consensus 475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999999999887654 233455789999999987
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.9e-49 Score=470.10 Aligned_cols=452 Identities=19% Similarity=0.256 Sum_probs=373.3
Q ss_pred cccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCc-----------ccccccceeecCCCCccCccCcccc
Q 002250 61 QALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDL-----------SMLHELSFLNLNSSGISGKFPWKSL 129 (947)
Q Consensus 61 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l-----------~~l~~L~~L~L~~n~i~~~~~~~~l 129 (947)
.+++.|+|++|++.|.+|..|+.+++|++|||++|.+......+ ..+..|+ +++++|.+.+.++...-
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHH
Confidence 47889999999999999999999999999999999873211111 1134455 55655555544431111
Q ss_pred cccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEEC--cCcccccccCccccCCCC
Q 002250 130 ENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLEL--SDNELFGEIPAGIVKLNK 207 (947)
Q Consensus 130 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--s~N~l~~~~~~~l~~l~~ 207 (947)
..+..+..+++... .+.. .....++.+++ .+|++++ +|..+.++++
T Consensus 160 ~~~~~l~~~~l~~~-------------------------~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~ 207 (636)
T 4eco_A 160 DLIKDCINSDPQQK-------------------------SIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTK 207 (636)
T ss_dssp HHHHHHHHHCTTSC-------------------------CCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTT
T ss_pred HHHHHHhhcCcccc-------------------------cccc------ccccchhhhhhccccCCCcc-CCHHHhcccC
Confidence 12223333333322 2211 11223333334 3689998 8999999999
Q ss_pred CcEEEeeccccccc-----------------CCccCC--CCCCccEEeccCCCCCCC-CccccccCCCCEEEccCcc-Cc
Q 002250 208 LWQLELYNNSLSGR-----------------LPVGFS--NLTNLMNFDVSQNRLEGD-LSELRFLNQLSSLHLFENQ-FS 266 (947)
Q Consensus 208 L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~N~l~~~-~~~l~~l~~L~~L~L~~N~-i~ 266 (947)
|++|+|++|.+++. +|..++ ++++|++|+|++|++.+. +..+..+++|++|+|++|+ ++
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 99999999999985 999999 999999999999998774 5579999999999999999 99
Q ss_pred c-cCCCCccCC------CcCcEEEccCccccccCCc--CccCcccccccccccccccCCCCCCcccCCccceeeeccccc
Q 002250 267 G-EIPEEFGEF------KHLTELSLYTNRLTGTLPQ--KLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNF 337 (947)
Q Consensus 267 ~-~~~~~~~~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~ 337 (947)
+ .+|..++.+ ++|++|+|++|+++ .+|. .++.+++|++|++++|.++|.+| .+..+.+|+.|++.+|++
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc
Confidence 8 889888876 99999999999999 8999 99999999999999999999999 999999999999999999
Q ss_pred CCcCCccccCCCC-ccEEEcccccccccCCCCCCCCC--CcceeccccCCcCCCCCCccc-------ccccccEEEccCc
Q 002250 338 NGTVPETYANCKS-LIRFRVNNNSLSGTIPPGIWSLP--NLSIIDLSTNQFEGPVTDDIG-------NAKSLALLLLANN 407 (947)
Q Consensus 338 ~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~L~~N 407 (947)
. .+|..+..+++ |+.|++++|.++ .+|..+..++ +|+.|++++|++.+..|..+. .+.+|++|+|++|
T Consensus 366 ~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 366 T-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp E-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred c-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 8 88999999999 999999999999 7888887755 999999999999999999888 8889999999999
Q ss_pred cccccCCCC-CCCCCcceEEEcccCcccCCCCccccc-c-------cccchhhccccccCCCCCcccc--cccccceeec
Q 002250 408 RFSGELPSK-ISEASSLVSIQLSLNQFSGQIPLDIGK-L-------KKLSSLYLHDNMFSGPLPYSIG--SCVSLTDINF 476 (947)
Q Consensus 408 ~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L 476 (947)
+++ .+|.. +..+++|+.|+|++|+++ .+|..+.. + ++|+.|+|++|+++ .+|..+. .+++|+.|+|
T Consensus 444 ~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 444 QIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp CCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEEC
T ss_pred ccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEEC
Confidence 999 56655 556899999999999999 66654433 2 39999999999999 7888887 9999999999
Q ss_pred cCceeeeecCCCCCccCcCcEEEC------CCCccCCccCCccc-ccccceeeCCCCcCCCCCCCcccccccccccccCC
Q 002250 477 AQNSLSGKIPDSLGSLPSLNSLNL------SNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIPEPLNIKAFIDSFTGNP 549 (947)
Q Consensus 477 s~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~gN~ 549 (947)
++|++++ +|..+.++++|+.|+| ++|++.+.+|..+. +++|+.|+|++|++ +.+|..+........+.+||
T Consensus 521 s~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp CSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCT
T ss_pred CCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCC
Confidence 9999997 9999999999999999 56889999998775 69999999999999 67787665444556788999
Q ss_pred CCCCC
Q 002250 550 GLCSK 554 (947)
Q Consensus 550 ~~c~~ 554 (947)
+.|-.
T Consensus 599 l~~~~ 603 (636)
T 4eco_A 599 NISID 603 (636)
T ss_dssp TCEEE
T ss_pred Ccccc
Confidence 88743
No 29
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.1e-48 Score=410.44 Aligned_cols=250 Identities=26% Similarity=0.334 Sum_probs=191.7
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.. +|+.||||++..... ........+.+|++++++++|||||+
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~--------------~~~~~~~~~~~Ei~il~~l~HpnIv~ 77 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVL--------------AKSDMQGRIEREISYLRLLRHPHIIK 77 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC--------------------CHHHHHHHHHHHHHCCCTTBCC
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHc--------------CCHHHHHHHHHHHHHHHHCCCCCCCe
Confidence 478999999999999999999965 799999999953221 11234567899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+++..|+||||+ +|+|.+++.+. ..+++.....++.||+.||+||| +++|+||||||+|||+++++.+
T Consensus 78 ~~~~~~~~~~~~ivmEy~-~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~v 151 (275)
T 3hyh_A 78 LYDVIKSKDEIIMVIEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNV 151 (275)
T ss_dssp EEEEEECSSEEEEEEECC-CEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCE
T ss_pred EEEEEEECCEEEEEEeCC-CCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCE
Confidence 999999999999999999 78999999874 45899999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||+|+....... ....+||+.|||||++.+..+ +.++||||+||++|||+||+.||... +.......
T Consensus 152 kl~DFGla~~~~~~~~---~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~-----~~~~~~~~ 223 (275)
T 3hyh_A 152 KIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPVLFKN 223 (275)
T ss_dssp EECCSSCC------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEeecCCCeecCCCCc---cCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC-----CHHHHHHH
Confidence 9999999986654322 234689999999999988776 57999999999999999999999532 22222222
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
....... ++......+.+++.+|++.||++|||+.|++++
T Consensus 224 i~~~~~~-----------~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 224 ISNGVYT-----------LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp HHHTCCC-----------CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred HHcCCCC-----------CCCCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 2222111 112234567889999999999999999999873
No 30
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=8.8e-48 Score=427.72 Aligned_cols=250 Identities=26% Similarity=0.355 Sum_probs=206.6
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
+.|+..+.||+|+||+||+|+.. +|+.||||++... .....+.+.+|+.++++++|||||++
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~-----------------~~~~~~~~~~Ei~il~~l~HpnIV~l 213 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLR-----------------KQQRRELLFNEVVIMRDYQHENVVEM 213 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEST-----------------TCSSGGGHHHHHHHHHHCCCTTBCCE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEecc-----------------chhHHHHHHHHHHHHHhCCCCCCCce
Confidence 56889999999999999999965 7999999998421 12344678899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
+++|.+++..||||||++||+|.++++. ..+++.....++.||+.||+||| +++||||||||+|||++.++.+|
T Consensus 214 ~~~~~~~~~~~iVmEy~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vK 287 (423)
T 4fie_A 214 YNSYLVGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVK 287 (423)
T ss_dssp EEEEEETTEEEEEEECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEE
T ss_pred EEEEEECCEEEEEEeCCCCCcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEE
Confidence 9999999999999999999999999975 34899999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhc
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
|+|||+|+....... .....+||+.|||||++.+..|+.++||||+||++|||++|+.||... +..+......
T Consensus 288 l~DFGla~~~~~~~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~~~i~ 360 (423)
T 4fie_A 288 LSDFGFCAQVSKEVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPLKAMKMIR 360 (423)
T ss_dssp ECCCTTCEECCSSCC--CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHH
T ss_pred EecCccceECCCCCc--cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHH
Confidence 999999987654332 233568999999999999999999999999999999999999999532 2222222111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.... +.+ .........+.+++.+||..||++|||+.|++++
T Consensus 361 ~~~~-------~~~-~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 361 DNLP-------PRL-KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp HSCC-------CCC-SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred cCCC-------CCC-cccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1110 111 1112234567889999999999999999999875
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-48 Score=455.66 Aligned_cols=454 Identities=19% Similarity=0.219 Sum_probs=301.7
Q ss_pred eEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-CcccccccceeecCC
Q 002250 39 AEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNS 117 (947)
Q Consensus 39 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~ 117 (947)
+.+|+++++++ .+|. .+. ++|+.|+|++|.+.+..|..|..+++|++|+|++|+|++..| .+..+++|++|+|++
T Consensus 3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-cccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 35777777776 3552 333 788888888888888777888888888888888888887654 478888888888888
Q ss_pred CCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCC--CEEECcCccc-
Q 002250 118 SGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQL--QNLELSDNEL- 194 (947)
Q Consensus 118 n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~Ls~N~l- 194 (947)
|+|+ .+|.. .+++|++|+|++|.+...++|..+.++++|++|++++|.+++ ..+..+++| ++|+|++|.+
T Consensus 79 N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 79 NKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred Ccee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 8887 44422 678888888888888766667777777888888888877775 355666666 7777777777
Q ss_pred -ccccCccccCCC-CCcEEEeecccccccCCc-cCCCCCCccEEeccCCC-------CCCCCccccccCCCCEEEccCcc
Q 002250 195 -FGEIPAGIVKLN-KLWQLELYNNSLSGRLPV-GFSNLTNLMNFDVSQNR-------LEGDLSELRFLNQLSSLHLFENQ 264 (947)
Q Consensus 195 -~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~-------l~~~~~~l~~l~~L~~L~L~~N~ 264 (947)
.+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|. +.+..+.+..+++|+.|++++|.
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 666666666655 234566677776654443 46667777777777775 44444456666667777776666
Q ss_pred CcccCCCCcc---CCCcCcEEEccCccccccCCcCc-----cCcccccccccccccccCCCCCCcccCCccceeeecccc
Q 002250 265 FSGEIPEEFG---EFKHLTELSLYTNRLTGTLPQKL-----GSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNN 336 (947)
Q Consensus 265 i~~~~~~~~~---~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~ 336 (947)
+++..+..+. ..++|++|++++|++++.+|..+ +.+++|+.+++++|.+ .+|.
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~----------------- 292 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ----------------- 292 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT-----------------
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch-----------------
Confidence 6542221111 12466666666666666666666 5666666666666655 2331
Q ss_pred cCCcCCccccCC---CCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccc--
Q 002250 337 FNGTVPETYANC---KSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSG-- 411 (947)
Q Consensus 337 ~~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 411 (947)
..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 293 ------~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 293 ------SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp ------HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred ------hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 222222 45666777777665321 12456677777777777776666667777777777777777764
Q ss_pred cCCCCCCCCCcceEEEcccCcccCCCCc-ccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCC
Q 002250 412 ELPSKISEASSLVSIQLSLNQFSGQIPL-DIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLG 490 (947)
Q Consensus 412 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 490 (947)
.+|..+..+++|+.|++++|++++.+|. .+..+++|+.|+|++|++++..|..+. ++|+.|+|++|+++ .+|..+.
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 4455666777777777777777764454 366677777777777777766665554 57777777777777 6677666
Q ss_pred ccCcCcEEECCCCccCCccCCcc-cccccceeeCCCCcCCCCCC
Q 002250 491 SLPSLNSLNLSNNKFSGEIPISL-TYPKLSLLDLSNNQLAGPIP 533 (947)
Q Consensus 491 ~l~~L~~L~Ls~N~l~~~~p~~~-~~~~L~~L~ls~N~l~~~~p 533 (947)
.+++|+.|+|++|++++.++..+ .+++|+.|++++|++++..+
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 77777777777777774443323 35777777777777766444
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.5e-48 Score=453.33 Aligned_cols=434 Identities=19% Similarity=0.226 Sum_probs=370.5
Q ss_pred CceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeec
Q 002250 36 GLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNL 115 (947)
Q Consensus 36 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L 115 (947)
.+++.++++++.+.+..| .+|.++++|++|+|++|.|.+..|+.|..+++|++|||++|+|++.++. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 689999999999877654 6899999999999999999999999999999999999999999965555 8999999999
Q ss_pred CCCCccCc-cCcccccccCCCceeeCCCCCCCCCCCChhhcccccC--cEEEccCccc--cccCCccCCCCC-CCCEEEC
Q 002250 116 NSSGISGK-FPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKL--YWLYLTNCSV--TGQIPEGIGNLT-QLQNLEL 189 (947)
Q Consensus 116 ~~n~i~~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~p~~~~~l~-~L~~L~L 189 (947)
++|.+++. +| ..+.++++|++|+|++|.+.. ..+..+++| +.|++++|.+ .+..|..+..+. +...|++
T Consensus 98 ~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 98 SFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cCCccccccch-hhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 99999873 45 689999999999999999975 357778888 9999999999 888888888776 3456789
Q ss_pred cCcccccccCc-cccCCCCCcEEEeeccc-------ccccCCccCCCCCCccEEeccCCCCCCCC-cc---ccccCCCCE
Q 002250 190 SDNELFGEIPA-GIVKLNKLWQLELYNNS-------LSGRLPVGFSNLTNLMNFDVSQNRLEGDL-SE---LRFLNQLSS 257 (947)
Q Consensus 190 s~N~l~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~---l~~l~~L~~ 257 (947)
++|.+.+.++. .+.++++|+.|++++|. +.+.+| .+..+++|+.|++++|.+++.. .. ....++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 99998776554 67889999999999998 776666 7899999999999999887521 11 122469999
Q ss_pred EEccCccCcccCCCCc-----cCCCcCcEEEccCccccccCC-cCccCc---ccccccccccccccCCCCCCcccCCccc
Q 002250 258 LHLFENQFSGEIPEEF-----GEFKHLTELSLYTNRLTGTLP-QKLGSW---ADFNYVDVSENLLTGPIPPDMCKTGAMT 328 (947)
Q Consensus 258 L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p-~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~~~~l~ 328 (947)
|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+....
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~----------- 318 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML----------- 318 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-----------
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-----------
Confidence 9999999999999998 8999999999999999 556 455554 67999999999876311
Q ss_pred eeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCC--CCCCcccccccccEEEccC
Q 002250 329 DLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEG--PVTDDIGNAKSLALLLLAN 406 (947)
Q Consensus 329 ~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~ 406 (947)
.+..+++|++|++++|.+++..|..+..+++|+.|+|++|++++ ..|..+..+++|++|++++
T Consensus 319 ---------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 319 ---------------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp ---------------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred ---------------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 12467788999999999998888889999999999999999986 4456788899999999999
Q ss_pred ccccccCCC-CCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeec
Q 002250 407 NRFSGELPS-KISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKI 485 (947)
Q Consensus 407 N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 485 (947)
|++++.+|. .+..+++|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|++|+|++|+|+ .+
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l 459 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SV 459 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-cc
Confidence 999975665 488899999999999999888877665 79999999999999 78888889999999999999999 56
Q ss_pred CCC-CCccCcCcEEECCCCccCCccC
Q 002250 486 PDS-LGSLPSLNSLNLSNNKFSGEIP 510 (947)
Q Consensus 486 p~~-~~~l~~L~~L~Ls~N~l~~~~p 510 (947)
|.. +..+++|+.|+|++|++++..+
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHhccCCcccEEECcCCCCcccCC
Confidence 665 9999999999999999997654
No 33
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.3e-48 Score=417.79 Aligned_cols=244 Identities=25% Similarity=0.298 Sum_probs=193.1
Q ss_pred hccCCcccccccCceeEEEEEeC----CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN----SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
++|++.+.||+|+||+||+|+.. +++.||||++.... ........+.+|++++++++||||
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~---------------~~~~~~~~~~~E~~il~~l~HpnI 88 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKAT---------------LKVRDRVRTKMERDILVEVNHPFI 88 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEE---------------EEEEECC------CCCCCCCCTTE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHH---------------cChHHHHHHHHHHHHHHHCCCCCC
Confidence 57999999999999999999852 47889999984221 111223467889999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
|++++++.+++..|+||||++||+|.+++.+. ..+++.....++.||+.||+||| +++|+||||||+|||++.++
T Consensus 89 v~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g 163 (304)
T 3ubd_A 89 VKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEG 163 (304)
T ss_dssp ECEEEEEEETTEEEEEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTS
T ss_pred CeEEEEEEECCEEEEEEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCC
Confidence 99999999999999999999999999999874 35899999999999999999999 89999999999999999999
Q ss_pred CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVY 864 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~ 864 (947)
.+||+|||+|+....... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||... +..+...
T Consensus 164 ~vKl~DFGla~~~~~~~~--~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~~~~ 236 (304)
T 3ubd_A 164 HIKLTDFGLSKESIDHEK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK-----DRKETMT 236 (304)
T ss_dssp CEEEESSEEEEC-----C--CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHH
T ss_pred CEEecccccceeccCCCc--cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc-----CHHHHHH
Confidence 999999999986543322 223468999999999999999999999999999999999999999532 2223222
Q ss_pred hhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCH
Q 002250 865 SKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSM 910 (947)
Q Consensus 865 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 910 (947)
........ ++...+.++.+++.+||+.||++|||+
T Consensus 237 ~i~~~~~~-----------~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 237 MILKAKLG-----------MPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp HHHHCCCC-----------CCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred HHHcCCCC-----------CCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 22222111 122234568889999999999999985
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-46 Score=453.29 Aligned_cols=530 Identities=19% Similarity=0.175 Sum_probs=351.5
Q ss_pred CCccccccccCCCCCcccceeeeCCCCceeEeccCCCccccccCcccccCC-cccceeeccCccccCcCchhhhcCCCcc
Q 002250 10 SDTGVFSSWTEANSVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGL-QALQKINLGTNFLYGTITEGLKSCTRLQ 88 (947)
Q Consensus 10 ~~~~~~~sw~~~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 88 (947)
|+...+++|..+... .|....|...+. ..+-++.+++. +|. ++ ++++.|+|++|.|++..+..|..+++|+
T Consensus 8 ~~~~~~~~~~~~~p~-~~~~c~~~~~~~--~~~c~~~~l~~-vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~ 79 (635)
T 4g8a_A 8 DDDDKLAAANSSIPE-SWEPCVEVVPNI--TYQCMELNFYK-IPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQ 79 (635)
T ss_dssp ------------------CCSEEEETTT--EEECTTSCCSS-CCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCcchhhcccCCCCC-CCCCccccCCCC--EEECCCCCcCc-cCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCC
Confidence 566778888754432 244433332221 12333333332 221 12 2566666666666666666666666666
Q ss_pred EEeCcCccCcCCCCC-cccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccC
Q 002250 89 VLDLGNNSFSGEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTN 167 (947)
Q Consensus 89 ~L~Ls~n~i~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 167 (947)
+|||++|+|++.++. |.+|++|++|+|++|+|++ +|...|.++++|++|+|++|+++..+ +..+.++++|++|+|++
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAH 157 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCS
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeecccc
Confidence 666666666665543 6666666666666666653 33355666666666666666665432 33456666666666666
Q ss_pred cccccc-CCccCCCCCCCCEEECcCcccccccCccccCCCCC----cEEEeecccccccCCccCCCCCCccEEeccCCCC
Q 002250 168 CSVTGQ-IPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKL----WQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRL 242 (947)
Q Consensus 168 n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 242 (947)
|.+++. +|..++.+++|++|+|++|+|++..+..+..+.++ ..++++.|.++...+..+. ...++.|++++|..
T Consensus 158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFD 236 (635)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCS
T ss_pred CccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccc
Confidence 666542 45566666666666666666666555555544332 3566666666644333332 23445555555533
Q ss_pred CC--------------------------------CCccccccCCCCEEEccCccCc---ccCCCCccCCCcCcEEEccCc
Q 002250 243 EG--------------------------------DLSELRFLNQLSSLHLFENQFS---GEIPEEFGEFKHLTELSLYTN 287 (947)
Q Consensus 243 ~~--------------------------------~~~~l~~l~~L~~L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~N 287 (947)
.. ....+..+..+..+.+..+... ...+..+..+.+++.+++.+|
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 316 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV 316 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred cccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence 21 0112233334444444433322 123445566778888888888
Q ss_pred cccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccc--cC
Q 002250 288 RLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSG--TI 365 (947)
Q Consensus 288 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~ 365 (947)
.+... ..+.....|+.|++++|.+.+..+. .+..+..+.+..|..... .....+++|+.|++++|.+.. ..
T Consensus 317 ~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 317 TIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred ccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhcccccccccc
Confidence 87633 2355667888999999988754443 345677777877776543 335578899999999999864 34
Q ss_pred CCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCC-CCCCCCCcceEEEcccCcccCCCCcccccc
Q 002250 366 PPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELP-SKISEASSLVSIQLSLNQFSGQIPLDIGKL 444 (947)
Q Consensus 366 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 444 (947)
+..+..+.+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..+..+++++.++++.|.+.+..+..+..+
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~ 468 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 468 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred ccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 4556678899999999999875 45568889999999999988876554 468899999999999999999999999999
Q ss_pred cccchhhcccccc-CCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc-ccccceee
Q 002250 445 KKLSSLYLHDNMF-SGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLD 522 (947)
Q Consensus 445 ~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ 522 (947)
+.|+.|+|++|.+ .+..|..|..+++|++|+|++|+|++.+|..|.++++|+.|+|++|+|++.+|..+. +++|++||
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 9999999999984 456788999999999999999999999999999999999999999999998887775 69999999
Q ss_pred CCCCcCCCCCCCcccc---cccccccccCCCCCCCCccc
Q 002250 523 LSNNQLAGPIPEPLNI---KAFIDSFTGNPGLCSKTDEY 558 (947)
Q Consensus 523 ls~N~l~~~~p~~~~~---~~~~~~~~gN~~~c~~~~~~ 558 (947)
|++|+|++.+|+.+.. ......+.+|||.|+|...|
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 9999999999987642 23345788999999998766
No 35
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=2e-47 Score=411.06 Aligned_cols=252 Identities=21% Similarity=0.346 Sum_probs=191.0
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
..+|++.+.||+|+||+||+|+.+ +|+.||||++... ......+.+.+|++++++++|||||+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~----------------~~~~~~~~~~~E~~il~~l~HpnIV~ 67 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLP----------------NRELAREKVMREVKALAKLEHPGIVR 67 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEEC----------------SSHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEecc----------------CCHHHHHHHHHHHHHHHhCCCCCCCe
Confidence 456899999999999999999965 7999999998421 11123457889999999999999999
Q ss_pred EEEEEecCCc------------cEEEEeccCCCChHHHhhhcCC-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccC
Q 002250 707 LYCSITSEDS------------NLLVYEYLPNGSLWDRLHTCHK-IEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDV 773 (947)
Q Consensus 707 l~~~~~~~~~------------~~lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dl 773 (947)
++++|.+.+. .|+||||+++|+|.+++..... ...++.....++.||+.||+||| +++||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDl 144 (299)
T 4g31_A 68 YFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDL 144 (299)
T ss_dssp EEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCC
T ss_pred EEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccC
Confidence 9999876543 5899999999999999987543 34567778899999999999999 899999999
Q ss_pred CCCCeEecCCCCeEEeccccceecccCCCCc----------ceecccccccccCccccccCCCCCccchHHHHHHHHHHH
Q 002250 774 KSSNILLDLEWKPRIADFGLAKIVQTGEAGD----------LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELV 843 (947)
Q Consensus 774 kp~NIll~~~~~~kl~DfG~a~~~~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell 843 (947)
||+|||++.++.+||+|||+|+......... .....+||+.|||||++.+..|+.++|||||||++|||+
T Consensus 145 Kp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell 224 (299)
T 4g31_A 145 KPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224 (299)
T ss_dssp CGGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred cHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999998765432211 123457999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 844 TGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 844 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
+ ||.. ..+....... +.+...++...+..+...+++.+||+.||++|||+.|+++
T Consensus 225 ~---Pf~~----~~~~~~~~~~----------~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 225 Y---PFST----QMERVRTLTD----------VRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp S---CCSS----HHHHHHHHHH----------HHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred c---CCCC----ccHHHHHHHH----------HhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 6 7632 1111111111 1112223334445556778999999999999999999987
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-45 Score=434.98 Aligned_cols=453 Identities=18% Similarity=0.199 Sum_probs=317.7
Q ss_pred eEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceeecCC
Q 002250 39 AEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLNLNS 117 (947)
Q Consensus 39 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~L~~ 117 (947)
..++++++++++ +|. .+. ++|+.|+|++|.|.+..+..|..+++|++|+|++|+|++..+. +..+++|++|+|++
T Consensus 34 ~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 678888888775 553 232 7889999999999888888899999999999999999887554 88888899999999
Q ss_pred CCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCC--CEEECcCccc-
Q 002250 118 SGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQL--QNLELSDNEL- 194 (947)
Q Consensus 118 n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L--~~L~Ls~N~l- 194 (947)
|+|+ .+|.. .+++|++|+|++|++...+.|..+.++++|++|++++|.+++. .+..+++| ++|+|++|++
T Consensus 110 N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 110 NRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp SCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 9887 45523 7888888888888888766677788888888888888888753 34444555 8888888887
Q ss_pred -ccccCccccCCC-CCcEEEeecccccccCCc-cCCCCCCccEEeccCCCC-----CCCCccccccCCCCEEEccCccCc
Q 002250 195 -FGEIPAGIVKLN-KLWQLELYNNSLSGRLPV-GFSNLTNLMNFDVSQNRL-----EGDLSELRFLNQLSSLHLFENQFS 266 (947)
Q Consensus 195 -~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l-----~~~~~~l~~l~~L~~L~L~~N~i~ 266 (947)
++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.|++++|+. .+....+..+++|+.|+|+++.+.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 777777777654 122457777777664443 356677777777777742 222334555666666666666554
Q ss_pred ccC----CCCccCCCcCcEEEccCccccccCCcCc-----cCcccccccccccccccCCCCCCcccCCccceeeeccccc
Q 002250 267 GEI----PEEFGEFKHLTELSLYTNRLTGTLPQKL-----GSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNF 337 (947)
Q Consensus 267 ~~~----~~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~ 337 (947)
+.. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+|.
T Consensus 263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~------------------ 321 (562)
T 3a79_B 263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSK------------------ 321 (562)
T ss_dssp HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCH------------------
T ss_pred HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecCh------------------
Confidence 311 1111 12356666666666665566555 4444444444444443 1221
Q ss_pred CCcCCcccc---CCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccc--c
Q 002250 338 NGTVPETYA---NCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSG--E 412 (947)
Q Consensus 338 ~~~~p~~~~---~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~ 412 (947)
..+. ...+|+.|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++ .
T Consensus 322 -----~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 394 (562)
T 3a79_B 322 -----EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394 (562)
T ss_dssp -----HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH
T ss_pred -----hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc
Confidence 1111 1246778888888775322 12567788888888888888777888888888888888888875 2
Q ss_pred CCCCCCCCCcceEEEcccCcccCCCCc-ccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCc
Q 002250 413 LPSKISEASSLVSIQLSLNQFSGQIPL-DIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGS 491 (947)
Q Consensus 413 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 491 (947)
+|..+..+++|+.|++++|++++.+|. .+..+++|+.|+|++|++++..|..+. ++|+.|+|++|+|+ .+|..+..
T Consensus 395 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~ 471 (562)
T 3a79_B 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTH 471 (562)
T ss_dssp HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTS
T ss_pred chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcC
Confidence 346678888888888888888874554 477788888888888888877766554 68888888888888 67777778
Q ss_pred cCcCcEEECCCCccCCccCCcc-cccccceeeCCCCcCCCCCC
Q 002250 492 LPSLNSLNLSNNKFSGEIPISL-TYPKLSLLDLSNNQLAGPIP 533 (947)
Q Consensus 492 l~~L~~L~Ls~N~l~~~~p~~~-~~~~L~~L~ls~N~l~~~~p 533 (947)
+++|+.|+|++|+|++.++..+ .+++|+.|++++|++++..|
T Consensus 472 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 8888888888888885444424 35888888888888877655
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-44 Score=439.19 Aligned_cols=397 Identities=21% Similarity=0.260 Sum_probs=277.0
Q ss_pred cceeeccC--ccccCcCchhhhcCCCccEEeCcCccCcC------------------CCCCcc--cccccceeecCCCCc
Q 002250 63 LQKINLGT--NFLYGTITEGLKSCTRLQVLDLGNNSFSG------------------EVPDLS--MLHELSFLNLNSSGI 120 (947)
Q Consensus 63 L~~L~L~~--n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~------------------~~~~l~--~l~~L~~L~L~~n~i 120 (947)
++.+.+.. |++.+ +|..|+++++|++|+|++|+|++ .++.++ ++++|++|+|++|.+
T Consensus 425 l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l 503 (876)
T 4ecn_A 425 LKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503 (876)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred hhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence 34444433 77777 78888888888888888888888 555566 788888888888887
Q ss_pred cCccCcccccccCCCceeeCCCCC-CCCCCCChhhcccc-------cCcEEEccCccccccCCc--cCCCCCCCCEEECc
Q 002250 121 SGKFPWKSLENLTNLEFLSLGDNP-FDPSPFPMEVLKLE-------KLYWLYLTNCSVTGQIPE--GIGNLTQLQNLELS 190 (947)
Q Consensus 121 ~~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls 190 (947)
.+.+| ..|.++++|++|+|++|+ ++...+|..+..++ +|+.|+|++|.++ .+|. .|+++++|++|+|+
T Consensus 504 ~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 504 MTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp CCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT
T ss_pred CccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC
Confidence 77777 677888888888888887 54313555555554 7777777777777 6676 77777777777777
Q ss_pred CcccccccCccccCCCCCcEEEeecccccccCCccCCCCCC-ccEEeccCCCCCCCCccccccC--CCCEEEccCccCcc
Q 002250 191 DNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTN-LMNFDVSQNRLEGDLSELRFLN--QLSSLHLFENQFSG 267 (947)
Q Consensus 191 ~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~l~~l~--~L~~L~L~~N~i~~ 267 (947)
+|+++ .+| .|..+++|++|+|++|+++ .+|..+..+++ |++|+|++|+++..+..+..++ +|+.|+|++|++.+
T Consensus 582 ~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 582 HNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp TSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 77776 666 7777777777777777777 66777777777 7777777777776655555543 37777777777776
Q ss_pred cCCCCc---c--CCCcCcEEEccCccccccCCcCc-cCcccccccccccccccCCCCCCcccCCccceeeecccccCCcC
Q 002250 268 EIPEEF---G--EFKHLTELSLYTNRLTGTLPQKL-GSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTV 341 (947)
Q Consensus 268 ~~~~~~---~--~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~ 341 (947)
.+|... . .+++|+.|+|++|+++ .+|..+ ..+++|+.|+|++|.++ .+|..++...
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~---------------- 720 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK---------------- 720 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT----------------
T ss_pred ccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc----------------
Confidence 554322 2 2346777777777777 555544 36677777777777776 5554433211
Q ss_pred CccccCCCCccEEEcccccccccCCCCCC--CCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCC
Q 002250 342 PETYANCKSLIRFRVNNNSLSGTIPPGIW--SLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISE 419 (947)
Q Consensus 342 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 419 (947)
+..+.++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------- 787 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------- 787 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----------
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----------
Confidence 112345568899999999988 6777776 88899999999999987 67778888888888888765
Q ss_pred CCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEE
Q 002250 420 ASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLN 499 (947)
Q Consensus 420 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 499 (947)
++++|++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.
T Consensus 788 -------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~ 857 (876)
T 4ecn_A 788 -------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYV 857 (876)
T ss_dssp -------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCE
T ss_pred -------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchhee
Confidence 4556666666666666666666666666666 45565554 4677777777766655556665555566666
Q ss_pred CCCCccC
Q 002250 500 LSNNKFS 506 (947)
Q Consensus 500 Ls~N~l~ 506 (947)
|.+|++.
T Consensus 858 L~~n~~~ 864 (876)
T 4ecn_A 858 LLYDKTQ 864 (876)
T ss_dssp EECCTTS
T ss_pred ecCCCcc
Confidence 6666654
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.7e-44 Score=425.90 Aligned_cols=461 Identities=20% Similarity=0.172 Sum_probs=348.8
Q ss_pred CCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCce
Q 002250 59 GLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEF 137 (947)
Q Consensus 59 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~ 137 (947)
.....+.+++++|++++ +|..+. ++|++|+|++|.|++.++ .+..+++|++|+|++|+|++..| ..|.++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCE
Confidence 34445889999999975 565554 899999999999998775 58999999999999999986655 78999999999
Q ss_pred eeCCCCCCCCCCCChhhcccccCcEEEccCcccccc-CCccCCCCCCCCEEECcCcccccccCccccCCCCC--cEEEee
Q 002250 138 LSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQ-IPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKL--WQLELY 214 (947)
Q Consensus 138 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L--~~L~L~ 214 (947)
|+|++|.++. +|.. .+++|++|+|++|++++. +|..|+++++|++|+|++|++++. .+..+++| ++|+|+
T Consensus 105 L~Ls~N~l~~--lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQN--ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCCE--ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EECCCCcCCc--cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 9999999975 4444 789999999999999863 467899999999999999998754 34445555 999999
Q ss_pred cccc--cccCCccCCCCC--CccEEeccCCCCCCCCc--cccccCCCCEEEccCcc-----CcccCCCCccCCCcCcEEE
Q 002250 215 NNSL--SGRLPVGFSNLT--NLMNFDVSQNRLEGDLS--ELRFLNQLSSLHLFENQ-----FSGEIPEEFGEFKHLTELS 283 (947)
Q Consensus 215 ~n~l--~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~--~l~~l~~L~~L~L~~N~-----i~~~~~~~~~~l~~L~~L~ 283 (947)
+|.+ ++..|..|..+. .| .++++.|.+.+... .+..+++|+.|++++|+ +.+ ....+..+++|+.|+
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVT 255 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEE
T ss_pred cccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEE
Confidence 9998 777787777665 33 56778888776443 35567778888888874 222 123466677777777
Q ss_pred ccCccccccC----CcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccc
Q 002250 284 LYTNRLTGTL----PQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNN 359 (947)
Q Consensus 284 L~~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n 359 (947)
++++.+++.. +..+ ..++|++|++++|.+++.+|..+... ....++.|+.+++..|
T Consensus 256 L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~-------------------~~~~L~~L~~~~~~~~ 315 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTY-------------------SETALKSLMIEHVKNQ 315 (562)
T ss_dssp EEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCC-------------------CSCSCCEEEEEEEEEC
T ss_pred ecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhc-------------------ccccchheehhhcccc
Confidence 7777665321 1111 12366666666666665555443211 0156677777777777
Q ss_pred cccccCC-CCCCC---CCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccC
Q 002250 360 SLSGTIP-PGIWS---LPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSG 435 (947)
Q Consensus 360 ~l~~~~p-~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 435 (947)
.+ .+| ..+.. ..+|+.|++++|.+.... ....+++|++|++++|++++.+|..+..+++|+.|+|++|++++
T Consensus 316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 77 334 22222 267999999999987433 23688999999999999999899999999999999999999996
Q ss_pred --CCCcccccccccchhhccccccCCCCC-cccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCc
Q 002250 436 --QIPLDIGKLKKLSSLYLHDNMFSGPLP-YSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPIS 512 (947)
Q Consensus 436 --~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 512 (947)
.+|..++++++|+.|+|++|++++.+| ..+..+++|++|+|++|++++.+|..+. ++|+.|+|++|+++..++..
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~ 469 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV 469 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh
Confidence 335679999999999999999998555 4588999999999999999988888765 79999999999999555555
Q ss_pred ccccccceeeCCCCcCCCCCCCccc--ccccccccccCCCCCCCCccc
Q 002250 513 LTYPKLSLLDLSNNQLAGPIPEPLN--IKAFIDSFTGNPGLCSKTDEY 558 (947)
Q Consensus 513 ~~~~~L~~L~ls~N~l~~~~p~~~~--~~~~~~~~~gN~~~c~~~~~~ 558 (947)
..+++|+.|+|++|+|++.++..+. .......+.+|||.|+|+..|
T Consensus 470 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517 (562)
T ss_dssp TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence 5679999999999999965544243 223345788999999987654
No 39
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.3e-44 Score=398.04 Aligned_cols=265 Identities=20% Similarity=0.277 Sum_probs=198.6
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||+||+|+.. +|+.||||++.... ......+.+.+|++++++++|||||++
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~---------------~~~~~~~~~~~Ei~il~~l~HpnIv~l 118 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAF---------------DVVTNAKRTLRELKILKHFKHDNIIAI 118 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTT---------------SSHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccc---------------cchHHHHHHHHHHHHHHhcCCCCcceE
Confidence 57999999999999999999965 79999999984211 111233567899999999999999999
Q ss_pred EEEEec------CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 708 YCSITS------EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 708 ~~~~~~------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
++++.. .+..|+||||++ |+|.+++... ..+++.....++.||+.||+||| +++||||||||+|||++
T Consensus 119 ~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~ 192 (398)
T 4b99_A 119 KDILRPTVPYGEFKSVYVVLDLME-SDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVN 192 (398)
T ss_dssp EEECCCSSCTTTCCCEEEEEECCS-EEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEEC
T ss_pred eeeeecccccccCCEEEEEEeCCC-CCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccC
Confidence 999764 356799999995 6899999863 46899999999999999999999 89999999999999999
Q ss_pred CCCCeEEeccccceecccCCC--CcceecccccccccCccccccCC-CCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 782 LEWKPRIADFGLAKIVQTGEA--GDLTHVIAGTHGYIAPEYAYTCK-INEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
.++.+||+|||+|+....... .......+||+.|||||++.+.. ++.++||||+||++|||++|+.||.+.. ..+
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~--~~~ 270 (398)
T 4b99_A 193 ENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKN--YVH 270 (398)
T ss_dssp TTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSS--HHH
T ss_pred CCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCC--HHH
Confidence 999999999999986643321 22233568999999999988754 6899999999999999999999995431 111
Q ss_pred HHHHHHhhc-ccccccccc------------ccCCC----CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 859 IVNWVYSKM-DSRDSMLTV------------VDPNI----SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 859 ~~~~~~~~~-~~~~~~~~~------------~d~~~----~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
....+.... ......... +.+.. ..........+.+++.+|+..||++|||+.|++++
T Consensus 271 ~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 271 QLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp HHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred HHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 111111110 000000000 00000 01111223567889999999999999999999874
No 40
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.1e-43 Score=392.57 Aligned_cols=200 Identities=28% Similarity=0.441 Sum_probs=170.3
Q ss_pred HHhhccCCcccccccCceeEEEEEeC----CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-c
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN----SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-R 700 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~ 700 (947)
.+.++|++.+.||+|+||+||+|+.+ +++.||||++.+ ......+.+|+++++.+ +
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~-------------------~~~~~~~~~E~~~l~~~~~ 78 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIP-------------------TSHPIRIAAELQCLTVAGG 78 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECT-------------------TSCHHHHHHHHHHHHHTCS
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcc-------------------ccCHHHHHHHHHHHHHhcC
Confidence 34578999999999999999999853 467899998832 12345678999999998 6
Q ss_pred ccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 701 HVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 701 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
|||||+++++|.+++..|+||||+++|+|.+++.. +++.....++.|++.||+||| +++|+||||||+|||+
T Consensus 79 h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~~~-----l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl 150 (361)
T 4f9c_A 79 QDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNS-----LSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLY 150 (361)
T ss_dssp BTTBCCCSEEEEETTEEEEEEECCCCCCHHHHHTT-----CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred CCCCceEEEEEEECCEEEEEEeCCCcccHHHHHcC-----CCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEE
Confidence 99999999999999999999999999999999954 788899999999999999999 8999999999999999
Q ss_pred cCC-CCeEEeccccceecccCCCC--------------------------cceecccccccccCccccccC-CCCCccch
Q 002250 781 DLE-WKPRIADFGLAKIVQTGEAG--------------------------DLTHVIAGTHGYIAPEYAYTC-KINEKSDV 832 (947)
Q Consensus 781 ~~~-~~~kl~DfG~a~~~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv 832 (947)
+.+ +.+||+|||+|+........ ......+||+.|||||++.+. .|+.++||
T Consensus 151 ~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~Di 230 (361)
T 4f9c_A 151 NRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDM 230 (361)
T ss_dssp ETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHH
T ss_pred eCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccch
Confidence 877 79999999999865433211 112235799999999999875 48999999
Q ss_pred HHHHHHHHHHHhCCCCCCCC
Q 002250 833 YSFGVVLMELVTGKRPIVPE 852 (947)
Q Consensus 833 ~slGv~l~elltg~~p~~~~ 852 (947)
||+||++|||++|+.||.+.
T Consensus 231 WSlG~il~ell~G~~Pf~~~ 250 (361)
T 4f9c_A 231 WSAGVIFLSLLSGRYPFYKA 250 (361)
T ss_dssp HHHHHHHHHHHHTCSSSSCC
T ss_pred hhhHHHHHHHHHCCCCCCCC
Confidence 99999999999999999654
No 41
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=5.5e-43 Score=405.80 Aligned_cols=252 Identities=23% Similarity=0.272 Sum_probs=198.9
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHH---HHHHHHhhccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYD---AEVATLSAVRHVN 703 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~E~~~l~~l~h~n 703 (947)
.++|++.+.||+|+||+||+|+.+ +|+.||||++... .+. .......+. .++.+++.++|||
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~------------~i~--~~~~~~~~~~E~~~l~ll~~~~HP~ 253 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKK------------RIK--MKQGETLALNERIMLSLVSTGDCPF 253 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH------------HHH--HTTCHHHHHHHHHHHHHHSSSCCTT
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHH------------Hcc--hhhhHHHHHHHHHHHHHHhhCCCCC
Confidence 367999999999999999999966 6999999998311 011 112223333 3466677789999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
||+++++|.+++..|+||||++||+|.+++... ..+++.....++.||+.||+||| +++||||||||+|||++.+
T Consensus 254 IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~ 328 (689)
T 3v5w_A 254 IVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEH 328 (689)
T ss_dssp BCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTT
T ss_pred EeEEEEEEEECCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCC
Confidence 999999999999999999999999999999874 35889999999999999999999 8999999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 862 (947)
|.+||+|||+|+...... ....+||+.|||||++.. ..|+.++||||+||++|||++|+.||...... +....
T Consensus 329 G~vKL~DFGlA~~~~~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~--~~~~i 402 (689)
T 3v5w_A 329 GHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DKHEI 402 (689)
T ss_dssp SCEEECCCTTCEECSSCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC--CHHHH
T ss_pred CCEEecccceeeecCCCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH--HHHHH
Confidence 999999999998765443 234689999999999975 46999999999999999999999999643221 12222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHH
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPS-----MRVVVQ 915 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~ev~~ 915 (947)
......... .++......+.+++.+|++.||.+|++ +.||.+
T Consensus 403 ~~~i~~~~~-----------~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 403 DRMTLTMAV-----------ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp HHHHHHCCC-----------CCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred HHhhcCCCC-----------CCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 111111111 112223456788999999999999998 577654
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.7e-42 Score=394.84 Aligned_cols=404 Identities=23% Similarity=0.241 Sum_probs=173.4
Q ss_pred CCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCce
Q 002250 59 GLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEF 137 (947)
Q Consensus 59 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~ 137 (947)
..++|+.|++++|.+ +.+|..++++++|++|+|++|++++..| .++.+++|+.+++..|.. .+|++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCE
Confidence 457888888888888 8888888888888888888888887555 477777764444333321 22344
Q ss_pred eeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeeccc
Q 002250 138 LSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNS 217 (947)
Q Consensus 138 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~ 217 (947)
|++++|.++.. |. -.++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|+
T Consensus 76 L~l~~~~l~~l--p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 76 LELNNLGLSSL--PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQ 142 (454)
T ss_dssp EECTTSCCSCC--CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSC
T ss_pred EEecCCccccC--CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCC
Confidence 44444444331 11 12344444444444443 3322 1344444444444432 1111 1344444444444
Q ss_pred ccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCc
Q 002250 218 LSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKL 297 (947)
Q Consensus 218 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l 297 (947)
+++ +| .|.++++|++|++++|++++.+..+ .+|++|++++|++++ +| .++.+++|++|++++|++++ +|...
T Consensus 143 l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~ 214 (454)
T 1jl5_A 143 LEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP 214 (454)
T ss_dssp CSS-CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC
T ss_pred CCC-Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc
Confidence 443 33 3444444444444444444432221 244444444444443 23 34444444444444444442 23221
Q ss_pred cCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcce
Q 002250 298 GSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSI 377 (947)
Q Consensus 298 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 377 (947)
++|++|++++|.++ .+| .+..+..++.|++.+|++.+ +|.. .++|+.|++++|.+++ +|.. +++|+.
T Consensus 215 ---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~ 281 (454)
T 1jl5_A 215 ---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTF 281 (454)
T ss_dssp ---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred ---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCE
Confidence 24444444444444 333 24444444444444444433 2221 2456666666666664 3432 256666
Q ss_pred eccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhcccccc
Q 002250 378 IDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMF 457 (947)
Q Consensus 378 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 457 (947)
|++++|++++.. . ..++|++|++++|++++ ++.. .++|+.|++++|++++ +|.. +++|+.|+|++|++
T Consensus 282 L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 282 LDVSENIFSGLS-E---LPPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHL 349 (454)
T ss_dssp EECCSSCCSEES-C---CCTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EECcCCccCccc-C---cCCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcc
Confidence 666666666521 1 11466666677666663 2211 1366677777777664 4433 45666777777776
Q ss_pred CCCCCcccccccccceeeccCceeee--ecCCCCCccCcCcEEECCCCccCCccCCcccccccceeeCCCCcCCC--CCC
Q 002250 458 SGPLPYSIGSCVSLTDINFAQNSLSG--KIPDSLGSLPSLNSLNLSNNKFSGEIPISLTYPKLSLLDLSNNQLAG--PIP 533 (947)
Q Consensus 458 ~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~--~~p 533 (947)
++ +|. .+++|++|++++|++++ .+|..+..+ +.|++.|.+|.. .++|+.||+++|++++ .+|
T Consensus 350 ~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~--~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 350 AE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL--PQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------------------------------
T ss_pred cc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc--cCcCCEEECCCCcCCccccch
Confidence 63 444 35667777777777766 555554432 234555555542 2556666666666665 555
Q ss_pred Cc
Q 002250 534 EP 535 (947)
Q Consensus 534 ~~ 535 (947)
..
T Consensus 416 ~s 417 (454)
T 1jl5_A 416 ES 417 (454)
T ss_dssp --
T ss_pred hh
Confidence 44
No 43
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=6e-42 Score=376.81 Aligned_cols=278 Identities=38% Similarity=0.610 Sum_probs=230.4
Q ss_pred HHHhhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
+...++|+..+.||+|+||+||+|+.++++.||||++... .....+.+.+|+.++++++||||
T Consensus 35 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-----------------~~~~~~~~~~E~~~l~~l~h~~i 97 (321)
T 2qkw_B 35 EEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE-----------------SSQGIEEFETEIETLSFCRHPHL 97 (321)
T ss_dssp CCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC-----------------CSSHHHHHHHHHHGGGSCCCTTB
T ss_pred HHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc-----------------ChHHHHHHHHHHHHHHhCCCCCE
Confidence 3456889999999999999999999888999999987422 11335678999999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcC--CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH--KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL 782 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 782 (947)
+++++++..++..++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 98 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~ 174 (321)
T 2qkw_B 98 VSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDE 174 (321)
T ss_dssp CCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECT
T ss_pred eeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECC
Confidence 999999999999999999999999999997643 345899999999999999999999 899999999999999999
Q ss_pred CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC-CCcccHHH
Q 002250 783 EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEF-GDSKDIVN 861 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~-~~~~~~~~ 861 (947)
++.+||+|||+++...............||+.|+|||++.+..++.++||||||+++|||++|+.||.... ........
T Consensus 175 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~ 254 (321)
T 2qkw_B 175 NFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAE 254 (321)
T ss_dssp TCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHH
T ss_pred CCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHH
Confidence 99999999999987554333333334568999999999999999999999999999999999999997543 23334555
Q ss_pred HHHhhccccccccccccCCC-CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 862 WVYSKMDSRDSMLTVVDPNI-SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
|....... ..+...+++.+ .....+.+..+.+++.+||+.||++|||+.|++++|+.+...
T Consensus 255 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 255 WAVESHNN-GQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp HTHHHHTT-TCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred Hhhhcccc-ccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 54333222 22344555554 445678889999999999999999999999999999976543
No 44
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.3e-42 Score=405.41 Aligned_cols=256 Identities=21% Similarity=0.302 Sum_probs=208.5
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
+.+.++|++.+.||+|+||+||+|+.+ +|+.||||++... .....+.+.+|+.+|+.++|||
T Consensus 153 ~~il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~-----------------~~~~~~~~~~Ei~il~~l~hpn 215 (573)
T 3uto_A 153 DHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP-----------------HESDKETVRKEIQTMSVLRHPT 215 (573)
T ss_dssp SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----------------SHHHHHHHHHHHHHHHHTCCTT
T ss_pred CcCccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEecc-----------------chhhHHHHHHHHHHHHhCCCCC
Confidence 445688999999999999999999965 7999999998421 1123456889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
||+++++|.+++..|+||||++||+|.+++... ...+++.....++.||+.||+||| +++|+||||||+|||++.+
T Consensus 216 Iv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~ 291 (573)
T 3uto_A 216 LVNLHDAFEDDNEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTK 291 (573)
T ss_dssp BCCEEEEEECSSEEEEEEECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSS
T ss_pred CCeEEEEEEECCEEEEEEeecCCCcHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCC
Confidence 999999999999999999999999999999753 346899999999999999999999 8999999999999999854
Q ss_pred --CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 784 --WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 784 --~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
+.+||+|||+|+...... .....+||+.|||||++.+..|+.++||||+||++|||++|+.||... +..+
T Consensus 292 ~~~~vKl~DFG~a~~~~~~~---~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~-----~~~~ 363 (573)
T 3uto_A 292 RSNELKLIDFGLTAHLDPKQ---SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE-----NDDE 363 (573)
T ss_dssp SCCCEEECCCSSCEECCTTS---EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-----SHHH
T ss_pred CCCCEEEeeccceeEccCCC---ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHH
Confidence 899999999999775443 233568999999999999999999999999999999999999999532 2222
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
...........+. ..........+.+++.+||+.||.+|||+.|++++
T Consensus 364 ~~~~i~~~~~~~~-------~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 364 TLRNVKSCDWNMD-------DSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp HHHHHHTTCCCCC-------SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHHHHHhCCCCCC-------cccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 2222222111111 11112233457789999999999999999999874
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.7e-41 Score=388.26 Aligned_cols=363 Identities=19% Similarity=0.190 Sum_probs=239.1
Q ss_pred ccCcEEEccCccccccCCccCCCCCCCCEEECcCccccccc-CccccCCCCCcEEEeecccccccCCccCCCCCCccEEe
Q 002250 158 EKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEI-PAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFD 236 (947)
Q Consensus 158 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 236 (947)
++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34555555555555555555555555555555555554322 34455555555555555555555555555555555555
Q ss_pred ccCCCCCCC-Ccc--ccccCCCCEEEccCccCcccCCCC-ccCCCcCcEEEccCccccccCCcCccCc--cccccccccc
Q 002250 237 VSQNRLEGD-LSE--LRFLNQLSSLHLFENQFSGEIPEE-FGEFKHLTELSLYTNRLTGTLPQKLGSW--ADFNYVDVSE 310 (947)
Q Consensus 237 Ls~N~l~~~-~~~--l~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~Ls~ 310 (947)
|++|++++. +.. +..+++|++|+|++|++++..|.. +..+++|++|++++|++++..|..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 555555542 111 455555666666666655554544 5556666666666666655555555544 4555666666
Q ss_pred ccccCCCCCC--------cccCCccceeeecccccCCcCCccccCC---CCccEEEcccccccccCCCCCCCCCCcceec
Q 002250 311 NLLTGPIPPD--------MCKTGAMTDLLVLQNNFNGTVPETYANC---KSLIRFRVNNNSLSGTIPPGIWSLPNLSIID 379 (947)
Q Consensus 311 N~l~~~~p~~--------~~~~~~l~~L~l~~n~~~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 379 (947)
|.+.+..+.. +..+.+|+.|++.+|++.+..|..+... ++|+.|++++|.+.+...
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------- 256 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------- 256 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-------------
Confidence 6655433222 1223344444444444444444444322 566666666665543211
Q ss_pred cccCCcCCCCCCccccc--ccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhcccccc
Q 002250 380 LSTNQFEGPVTDDIGNA--KSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMF 457 (947)
Q Consensus 380 Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 457 (947)
..+.+....+..+..+ ++|+.|++++|++++..|..+..+++|+.|+|++|++++..|..|+++++|+.|+|++|++
T Consensus 257 -~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 257 -GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp -TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 1122222223333333 5899999999999988899999999999999999999988888999999999999999999
Q ss_pred CCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCCC
Q 002250 458 SGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIPE 534 (947)
Q Consensus 458 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~ 534 (947)
++..|..|+.+++|++|+|++|++++..|..|..+++|++|+|++|++++.++..+. +++|+.|++++|++++.+|.
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 988889999999999999999999988899999999999999999999987776654 68999999999999998884
No 46
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.2e-41 Score=375.48 Aligned_cols=286 Identities=36% Similarity=0.604 Sum_probs=231.3
Q ss_pred ccccccH-HHHhhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHH
Q 002250 618 RVLSFSE-KEIIDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATL 696 (947)
Q Consensus 618 ~~~~~~~-~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l 696 (947)
..+++.+ +...++|++.+.||+|+||.||+|+..+++.||||++.... .......+.+|++++
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~e~~~l 81 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEER----------------TQGGELQFQTEVEMI 81 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC---------------------CCCHHHHHHHGG
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEecccc----------------CchHHHHHHHHHHHH
Confidence 3344444 44568899999999999999999998889999999984221 112234689999999
Q ss_pred hhccccccceEEEEEecCCccEEEEeccCCCChHHHhhhcC--CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCC
Q 002250 697 SAVRHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH--KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVK 774 (947)
Q Consensus 697 ~~l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlk 774 (947)
++++||||+++++++..++..++||||+++|+|.+++.... ...+++..+..++.|++.||+|||..+..+|+|||||
T Consensus 82 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlk 161 (326)
T 3uim_A 82 SMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVK 161 (326)
T ss_dssp GTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCS
T ss_pred HhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCc
Confidence 99999999999999999999999999999999999998653 3458999999999999999999994322399999999
Q ss_pred CCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC--
Q 002250 775 SSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPE-- 852 (947)
Q Consensus 775 p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~-- 852 (947)
|+||+++.++.+||+|||+++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||...
T Consensus 162 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 240 (326)
T 3uim_A 162 AANILLDEEFEAVVGDFGLAKLMDYKDTH-VTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARL 240 (326)
T ss_dssp GGGEEECTTCCEEECCCSSCEECCSSSSC-EECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHH
T ss_pred hhhEEECCCCCEEeccCccccccCccccc-ccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccccccc
Confidence 99999999999999999999876544322 233456999999999999888999999999999999999999999521
Q ss_pred -CCCcccHHHHHHhhccccccccccccCCC-CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 853 -FGDSKDIVNWVYSKMDSRDSMLTVVDPNI-SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 853 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
........+|+........ .....+... .....+.+..+.+++.+|++.||++|||+.|++++|++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 241 ANDDDVMLLDWVKGLLKEKK-LEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp TTTSCSBHHHHHTTTTSSCC-STTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred ccccchhHHHHHHHHhhchh-hhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 2334455566544433332 244444444 4567788899999999999999999999999999999744
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-41 Score=391.79 Aligned_cols=385 Identities=20% Similarity=0.179 Sum_probs=247.4
Q ss_pred eeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCceeeCCCC
Q 002250 65 KINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDN 143 (947)
Q Consensus 65 ~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n 143 (947)
.++.++++++ .+|. + .++|++|||++|.|++..+ .+..+++|++|+|++|.+.+.++...|.++++|++|+|++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4566666663 3343 2 2677777777777776544 36777777777777777765555456666666666666666
Q ss_pred CCCCCCCChhhcccccCcEEEccCccccccCCcc--CCCCCCCCEEECcCcccccccCcc-ccCCCCCcEEEeecccccc
Q 002250 144 PFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEG--IGNLTQLQNLELSDNELFGEIPAG-IVKLNKLWQLELYNNSLSG 220 (947)
Q Consensus 144 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~~n~l~~ 220 (947)
.+... .|..+.++++|++|+|++|.+++.+|.. |..+++|++|+|++|++++..|.. +.++++|++|+|++|.+++
T Consensus 90 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCcc-ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 66432 2444555555555555555555433332 555555555555555555444443 4555555555555555555
Q ss_pred cCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCC--------ccCCCcCcEEEccCcccccc
Q 002250 221 RLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEE--------FGEFKHLTELSLYTNRLTGT 292 (947)
Q Consensus 221 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~--------~~~l~~L~~L~L~~N~l~~~ 292 (947)
..+..+..+. ..+|+.|++++|.+.+..+.. +..+++|++|++++|++++.
T Consensus 169 ~~~~~l~~l~---------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 169 ICEEDLLNFQ---------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp CCTTTSGGGT---------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred cChhhhhccc---------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence 4444444330 033444444444444332222 33556777777777777766
Q ss_pred CCcCccCc---ccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCC
Q 002250 293 LPQKLGSW---ADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGI 369 (947)
Q Consensus 293 ~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 369 (947)
.|..+... .+|+.|++++|.+.+... ..+.+....+..+..+
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--------------------- 272 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGL--------------------- 272 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGG---------------------
T ss_pred chhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccc---------------------
Confidence 66655444 667777777776553211 0111111111111111
Q ss_pred CCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccch
Q 002250 370 WSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSS 449 (947)
Q Consensus 370 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 449 (947)
..++|+.|++++|++.+..+..+..+++|++|++++|++++..|..|..+++|+.|+|++|++++..|..|+++++|+.
T Consensus 273 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 273 -EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp -TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred -cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 1246667777777776666666777777777777777777677777888888888888888888777888888889999
Q ss_pred hhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCC
Q 002250 450 LYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPI 511 (947)
Q Consensus 450 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 511 (947)
|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..|.
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999888888999999999999999999977777789999999999999999998884
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.1e-41 Score=383.69 Aligned_cols=409 Identities=22% Similarity=0.257 Sum_probs=240.5
Q ss_pred CceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCc-------------cEEeCcCccCcCCCC
Q 002250 36 GLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRL-------------QVLDLGNNSFSGEVP 102 (947)
Q Consensus 36 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L-------------~~L~Ls~n~i~~~~~ 102 (947)
.++..++++++++ |.+| .+++++++|++|++++|.+.+.+|..++.+++| ++|++++|.+++.+.
T Consensus 11 ~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 4678899999888 8888 679999999999999999999999999998876 788888888776444
Q ss_pred CcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCC
Q 002250 103 DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLT 182 (947)
Q Consensus 103 ~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 182 (947)
. .++|++|++++|.+++ +| . .+++|++|++++|++...+ .. .++|++|++++|++++ +| .|++++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp-~---~~~~L~~L~l~~n~l~~l~--~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LP-E---LPQSLKSLLVDNNNLKALS--DL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CC-C---CCTTCCEEECCSSCCSCCC--SC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred C---cCCCCEEEccCCcCCc-cc-c---ccCCCcEEECCCCccCccc--CC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 2 3677888888888775 44 1 2367888888888776532 11 1577788888887775 56 477777
Q ss_pred CCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccC
Q 002250 183 QLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFE 262 (947)
Q Consensus 183 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~ 262 (947)
+|++|++++|++++ +|..+ .+|++|++++|++++ +| .|.++++|++|++++|++++.+... .+|++|++++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGN 224 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCS
T ss_pred CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcC
Confidence 88888888887764 45433 467777777777775 44 5777777777777777777644322 4677777777
Q ss_pred ccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCC
Q 002250 263 NQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVP 342 (947)
Q Consensus 263 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p 342 (947)
|+++ .+| .++.+++|++|++++|++++ +|.. +++|+.|++++|.+++ +|
T Consensus 225 n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~------------------------ 273 (454)
T 1jl5_A 225 NILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LP------------------------ 273 (454)
T ss_dssp SCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CC------------------------
T ss_pred CcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cC------------------------
Confidence 7777 555 37777777777777777763 4442 3567777777777663 22
Q ss_pred ccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCc
Q 002250 343 ETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASS 422 (947)
Q Consensus 343 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 422 (947)
.. .++|+.|++++|.+++. |.. .++|+.|++++|++++.. . ..++|++|++++|++++ +|.. +++
T Consensus 274 ~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i~-~---~~~~L~~L~Ls~N~l~~-lp~~---~~~ 338 (454)
T 1jl5_A 274 EL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSLC-D---LPPSLEELNVSNNKLIE-LPAL---PPR 338 (454)
T ss_dssp CC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEEC-C---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred cc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCccc-C---CcCcCCEEECCCCcccc-cccc---CCc
Confidence 21 25778888888888752 221 257888888888887532 1 12578889999998885 6654 578
Q ss_pred ceEEEcccCcccCCCCcccccccccchhhccccccCC--CCCcccccccccceeeccCceeeeecCCCCCccCcCcEEEC
Q 002250 423 LVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSG--PLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNL 500 (947)
Q Consensus 423 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 500 (947)
|+.|++++|+++ .+|. .+++|++|+|++|++++ .+|.+++. |+.|.+.+.+|.. +++|+.|++
T Consensus 339 L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~l 403 (454)
T 1jl5_A 339 LERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHV 403 (454)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------
T ss_pred CCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEEC
Confidence 899999999998 5665 47889999999999988 66766653 3457788888874 578999999
Q ss_pred CCCccCC--ccCCcccccccceeeCCCCcCCCCCCCcc
Q 002250 501 SNNKFSG--EIPISLTYPKLSLLDLSNNQLAGPIPEPL 536 (947)
Q Consensus 501 s~N~l~~--~~p~~~~~~~L~~L~ls~N~l~~~~p~~~ 536 (947)
++|++++ .+|. .++.|.+.+|.+.+++|...
T Consensus 404 s~N~l~~~~~iP~-----sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 404 ETNPLREFPDIPE-----SVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp --------------------------------------
T ss_pred CCCcCCccccchh-----hHhheeCcCcccCCccccCH
Confidence 9999997 5553 56778889999988777543
No 49
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=2.4e-41 Score=378.66 Aligned_cols=260 Identities=23% Similarity=0.333 Sum_probs=211.4
Q ss_pred hhccCCcccccccCceeEEEEEeC--------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN--------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV 699 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 699 (947)
.++|++.+.||+|+||.||+|+.. ++..||||++... ........+.+|+++++++
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~----------------~~~~~~~~~~~E~~~l~~l 143 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD----------------ATEKDLSDLVSEMEMMKMI 143 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT----------------CBHHHHHHHHHHHHHHHHS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC----------------cCHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999852 3567999998421 1112346789999999999
Q ss_pred -cccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCC--------------ccCCHHHHHHHHHHHHHHHHHHhcCC
Q 002250 700 -RHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHK--------------IEMDWVVRYAIAVGAAKGLEYLHHGF 764 (947)
Q Consensus 700 -~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~~~~~~i~~~ia~~l~yLH~~~ 764 (947)
+||||+++++++..++..|+||||+++|+|.+++..... ..+++..+..++.||+.||+|||
T Consensus 144 ~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH--- 220 (370)
T 2psq_A 144 GKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA--- 220 (370)
T ss_dssp CCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---
Confidence 899999999999999999999999999999999986432 35789999999999999999999
Q ss_pred CCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh
Q 002250 765 DRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT 844 (947)
Q Consensus 765 ~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt 844 (947)
+.+|+||||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++
T Consensus 221 ~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt 300 (370)
T 2psq_A 221 SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 300 (370)
T ss_dssp HTTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHT
T ss_pred hCCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999987655443333334467889999999999999999999999999999999
Q ss_pred -CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 845 -GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 845 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
|+.||... ....+...+... ...+.+..++..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 301 ~g~~p~~~~--~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il 363 (370)
T 2psq_A 301 LGGSPYPGI--PVEELFKLLKEG-------------HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 363 (370)
T ss_dssp TSCCSSTTC--CGGGHHHHHHTT-------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCC--CHHHHHHHHhcC-------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 99998542 222222222111 111222334567889999999999999999999999998753
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.6e-40 Score=378.66 Aligned_cols=371 Identities=19% Similarity=0.211 Sum_probs=296.3
Q ss_pred ccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCC
Q 002250 55 DSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTN 134 (947)
Q Consensus 55 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~ 134 (947)
.+++.+++|+.|++++|.+.+. | .+..+++|++|+|++|+|++.+ ++.+++|++|+|++|++++. + +.++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D---VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C---CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e---cCCCCc
Confidence 4678889999999999999775 4 6889999999999999998763 88899999999999998863 2 788999
Q ss_pred CceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEee
Q 002250 135 LEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELY 214 (947)
Q Consensus 135 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 214 (947)
|++|+|++|+++.. + +..+++|++|++++|++++. .++++++|++|++++|+..+.+ .+..+++|++|+++
T Consensus 108 L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCEEECCCCcCCee--c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999998764 3 77889999999999999864 3788899999999999654454 57888899999999
Q ss_pred cccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCC
Q 002250 215 NNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLP 294 (947)
Q Consensus 215 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 294 (947)
+|++++ +| +..+++|+.|++++|++++. .+..+++|+.|+|++|++++ +| ++.+++|++|++++|++++..
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 999986 44 78889999999999998876 47788899999999999986 55 788889999999999998643
Q ss_pred cCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCC
Q 002250 295 QKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPN 374 (947)
Q Consensus 295 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 374 (947)
++.+++|+.|++++|.++ .+++.+|.+.+.+| ++.+++|+.|++++|...+.+|. ..++
T Consensus 250 --~~~l~~L~~L~l~~n~L~--------------~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQTDLL--------------EIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp --CTTCTTCCEEECTTCCCS--------------CCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred --HHHCCCCCEEeccCCCCC--------------EEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 456778888888777543 56677777777777 56788888888888888777774 3466
Q ss_pred cceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccc
Q 002250 375 LSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHD 454 (947)
Q Consensus 375 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 454 (947)
|+.|++++| ++|++|++++|++++ ++ +..+++|+.|++++|+|++ ++.|..|++++
T Consensus 309 L~~L~l~~~-------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 309 ITELDLSQN-------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp CSCCCCTTC-------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred ceEechhhc-------------ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 777776665 578889999999986 33 8888899999999999885 25677788888
Q ss_pred cccCCCCCcccccccccceeeccCceeeeecCCCCCcc-CcCcEEECC
Q 002250 455 NMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSL-PSLNSLNLS 501 (947)
Q Consensus 455 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls 501 (947)
|.+.|. +.+..|..+++++|+++|.+|..+... .++....-+
T Consensus 365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 365 NNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp TSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred CcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeeccCC
Confidence 888875 366778888999999998888765432 334334433
No 51
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=3.6e-40 Score=360.37 Aligned_cols=279 Identities=33% Similarity=0.527 Sum_probs=224.7
Q ss_pred HHHhhccCCc------ccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhh
Q 002250 625 KEIIDAVKPE------NLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSA 698 (947)
Q Consensus 625 ~~~~~~~~~~------~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 698 (947)
..+++.|... +.||+|+||.||+|... ++.||||++..... .......+.+.+|+.++++
T Consensus 21 ~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-------------~~~~~~~~~~~~E~~~l~~ 86 (307)
T 2nru_A 21 KNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN-NTTVAVKKLAAMVD-------------ITTEELKQQFDQEIKVMAK 86 (307)
T ss_dssp HHHTTTTCCSBTTTTCCEEEECSSEEEEEEESS-SCEEEEEEECCCTT-------------SCTTTHHHHHHHHHHHHHH
T ss_pred HHHHcccccccccccCCccccCCCeEEEEEEEC-CceEEEEEEecccC-------------cchHHHHHHHHHHHHHHHh
Confidence 4555555554 89999999999999874 88999999843211 0112335678999999999
Q ss_pred ccccccceEEEEEecCCccEEEEeccCCCChHHHhhhc-CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCC
Q 002250 699 VRHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTC-HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSN 777 (947)
Q Consensus 699 l~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~N 777 (947)
++||||+++++++..++..++||||+++++|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+|
T Consensus 87 l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~N 163 (307)
T 2nru_A 87 CQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSAN 163 (307)
T ss_dssp CCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGG
T ss_pred cCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHH
Confidence 99999999999999999999999999999999999754 2356899999999999999999999 8899999999999
Q ss_pred eEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 778 ILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 778 Ill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
|+++.++.+||+|||+++...............||+.|+|||++.+ .++.++||||||+++|||++|+.||..... ..
T Consensus 164 ili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~ 241 (307)
T 2nru_A 164 ILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQ 241 (307)
T ss_dssp EEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBS-SS
T ss_pred EEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcc-hH
Confidence 9999999999999999987655433333334578999999998764 588999999999999999999999965432 12
Q ss_pred cHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 858 DIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
....+..........+...+++.+.......+..+.+++.+||+.||.+|||+.+++++|+++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 242 LLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp BTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 22233222233333344555666677788888999999999999999999999999999998754
No 52
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=3.2e-41 Score=370.85 Aligned_cols=262 Identities=25% Similarity=0.319 Sum_probs=207.7
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||+||+|+.. ++.||||++.. .......+.+|+.++++++||||++++
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~------------------~~~~~~~~~~E~~~l~~l~hpniv~~~ 84 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPI------------------QDKQSWQNEYEVYSLPGMKHENILQFI 84 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECG------------------GGHHHHHHHHHHHTSTTCCCTTBCCEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeec------------------CchHHHHHHHHHHHHhcCCCCCchhhc
Confidence 67899999999999999999987 79999999831 112234566799999999999999999
Q ss_pred EEEecCCc----cEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCC----------CeEeccCC
Q 002250 709 CSITSEDS----NLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDR----------PVIHRDVK 774 (947)
Q Consensus 709 ~~~~~~~~----~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~----------~ivH~Dlk 774 (947)
+++..+.. .++||||+++|+|.++++. ..+++..+..++.|++.||+||| +. +|+|||||
T Consensus 85 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlk 158 (322)
T 3soc_A 85 GAEKRGTSVDVDLWLITAFHEKGSLSDFLKA---NVVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIK 158 (322)
T ss_dssp EEEEEECSSSEEEEEEEECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCS
T ss_pred ceeccCCCCCceEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCC
Confidence 99988654 5999999999999999986 34899999999999999999999 77 99999999
Q ss_pred CCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccC-----CCCCccchHHHHHHHHHHHhCCCCC
Q 002250 775 SSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-----KINEKSDVYSFGVVLMELVTGKRPI 849 (947)
Q Consensus 775 p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~slGv~l~elltg~~p~ 849 (947)
|+||+++.++.+||+|||+++...............||+.|+|||++.+. .++.++|||||||++|||+||+.||
T Consensus 159 p~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf 238 (322)
T 3soc_A 159 SKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAA 238 (322)
T ss_dssp GGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTS
T ss_pred hHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999877655443333446799999999999763 4566889999999999999999999
Q ss_pred CCCCCCcc-----------cHHHHHHhhccccccccccccCCCCc--cCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 850 VPEFGDSK-----------DIVNWVYSKMDSRDSMLTVVDPNISE--ILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 850 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
........ ....+....... ...+.+.. .....+..+.+++.+||+.||++|||+.|+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~ 312 (322)
T 3soc_A 239 DGPVDEYMLPFEEEIGQHPSLEDMQEVVVHK------KKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGER 312 (322)
T ss_dssp SSCCCCCCCTTHHHHCSSCCHHHHHHHHTTS------CCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred CCCcchhccchhhhhccCCchhhhhhhhhcc------cCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence 65432111 111111111111 11112211 123456779999999999999999999999999
Q ss_pred hhccC
Q 002250 917 LEEAE 921 (947)
Q Consensus 917 L~~~~ 921 (947)
|+++.
T Consensus 313 L~~l~ 317 (322)
T 3soc_A 313 ITQMQ 317 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99764
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-39 Score=394.21 Aligned_cols=492 Identities=18% Similarity=0.160 Sum_probs=406.7
Q ss_pred eeeeCCCC----------ceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCc
Q 002250 29 GIVCDSNG----------LVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFS 98 (947)
Q Consensus 29 gv~c~~~~----------~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~ 98 (947)
.|.|...| .++.|||+++++++ ++..+|.++++|+.|+|++|+|.++.+++|..+++|++|+|++|+|+
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 47787532 68899999998775 45578999999999999999999999999999999999999999999
Q ss_pred CCCCC-cccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCcc
Q 002250 99 GEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEG 177 (947)
Q Consensus 99 ~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 177 (947)
+.++. |.+|++|++|+|++|++++..+ ..|.++++|++|+|++|.+.....|..+..+++|++|+|++|++++..|..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 88775 8999999999999999986544 789999999999999999998888999999999999999999999988888
Q ss_pred CCCCCCC----CEEECcCcccccccCccccCCCCCcEEEeeccccccc-CCccCCC------------------------
Q 002250 178 IGNLTQL----QNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGR-LPVGFSN------------------------ 228 (947)
Q Consensus 178 ~~~l~~L----~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~------------------------ 228 (947)
|..+.++ ..++++.|.+....+..+ ....++.|++.+|..... .+..+..
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 8766554 478999999975544443 444567788877754321 1122222
Q ss_pred ------CCCccEEeccCCCCC----CCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCcc
Q 002250 229 ------LTNLMNFDVSQNRLE----GDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLG 298 (947)
Q Consensus 229 ------l~~L~~L~Ls~N~l~----~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 298 (947)
+..+..+++..+... +....+..+.+++.+.+.+|.+.... .+.....|+.|++.+|.+.+..+.
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~--- 346 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL--- 346 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---
Confidence 333333333333222 23344667788999999999987433 466678899999999998854433
Q ss_pred CcccccccccccccccCCCCCCcccCCccceeeecccccCC--cCCccccCCCCccEEEcccccccccCCCCCCCCCCcc
Q 002250 299 SWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNG--TVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLS 376 (947)
Q Consensus 299 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 376 (947)
.+..|+.++++.|.+... .....++.++.+.+..|.+.. ..+..+..+.+|+.+++..|.+. ..+..+..+++|+
T Consensus 347 ~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~ 423 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLE 423 (635)
T ss_dssp BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCC
T ss_pred cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccccccccccc
Confidence 467888999999987643 345578889999999998753 45667778899999999999998 4566788899999
Q ss_pred eeccccCCcCCCCC-CcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCccc-CCCCcccccccccchhhccc
Q 002250 377 IIDLSTNQFEGPVT-DDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFS-GQIPLDIGKLKKLSSLYLHD 454 (947)
Q Consensus 377 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~ 454 (947)
.+++++|......+ ..|..+.+++.++++.|.+.+..|..+..++.|+.|+|++|++. +.+|..|..+++|++|+|++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 99999888766544 56889999999999999999999999999999999999999854 46788999999999999999
Q ss_pred cccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc-c-cccceeeCCCCcCCCC
Q 002250 455 NMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-Y-PKLSLLDLSNNQLAGP 531 (947)
Q Consensus 455 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~-~~L~~L~ls~N~l~~~ 531 (947)
|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|+.|+|++|+|++.+|..+. + ++|+.|+|++|++++.
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999999988899999999999999999999999998875 4 6899999999999864
No 54
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.4e-40 Score=363.05 Aligned_cols=261 Identities=31% Similarity=0.445 Sum_probs=201.5
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|++.+.||+|+||+||+|+.. |+.||||++..... .......+.+|++++++++||||+++
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~---------------~~~~~~~~~~E~~~l~~l~hp~iv~~ 99 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDF---------------HAERVNEFLREVAIMKRLRHPNIVLF 99 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCC---------------SHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred hhHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCC---------------CHHHHHHHHHHHHHHHhCCCCCEeeE
Confidence 367889999999999999999875 88999999842211 11234578899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcC-CccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEeccCCCCCeEecCCC
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCH-KIEMDWVVRYAIAVGAAKGLEYLHHGFDRP--VIHRDVKSSNILLDLEW 784 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~--ivH~Dlkp~NIll~~~~ 784 (947)
++++..++..++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+ |+||||||+||+++.++
T Consensus 100 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~ 176 (309)
T 3p86_A 100 MGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKY 176 (309)
T ss_dssp EEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTC
T ss_pred EEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCC
Confidence 999999999999999999999999998643 234899999999999999999999 788 99999999999999999
Q ss_pred CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVY 864 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~ 864 (947)
.+||+|||+++....... ......||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+...
T Consensus 177 ~~kL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~-----~~~~~~~ 249 (309)
T 3p86_A 177 TVKVCDFGLSRLKASTFL--SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL-----NPAQVVA 249 (309)
T ss_dssp CEEECCCC-------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS-----CHHHHHH
T ss_pred cEEECCCCCCcccccccc--ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHH
Confidence 999999999975443321 123457899999999999999999999999999999999999998532 1111111
Q ss_pred hhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 865 SKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 865 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
...... ...+.+...+..+.+++.+||+.||++|||+.|+++.|+.+...
T Consensus 250 ~~~~~~---------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~ 299 (309)
T 3p86_A 250 AVGFKC---------KRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS 299 (309)
T ss_dssp HHHHSC---------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred HHHhcC---------CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 111000 01112233445688999999999999999999999999976543
No 55
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.8e-41 Score=368.64 Aligned_cols=254 Identities=22% Similarity=0.327 Sum_probs=199.1
Q ss_pred HHHhhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
+++.++|++.+.||+|+||+||+|+. .+|+.||||++..... ......+.+|++++++++|||
T Consensus 6 ~~l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~----------------~~~~~~~~~Ei~~l~~l~hpn 69 (347)
T 3zgw_A 6 DELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTL----------------GSDLPRIKTEIEALKNLRHQH 69 (347)
T ss_dssp TTTTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC-------------------CCHHHHHHHHHHTCCCTT
T ss_pred HHHhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEcccc----------------chHHHHHHHHHHHHHhCCCCC
Confidence 44568899999999999999999996 4799999999843211 123456889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++...+..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++++
T Consensus 70 Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~ 144 (347)
T 3zgw_A 70 ICQLYHVLETANKIFMVLEYCPGGELFDYIISQ--DRLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEY 144 (347)
T ss_dssp BCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTT
T ss_pred EeeEEEEEEeCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCC
Confidence 999999999999999999999999999999764 35899999999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 862 (947)
+.+||+|||++......... .....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.. .+....
T Consensus 145 ~~~kL~DFG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~-----~~~~~~ 218 (347)
T 3zgw_A 145 HKLKLIDFGLCAKPKGNKDY-HLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDD-----DNVMAL 218 (347)
T ss_dssp SCEEECCCTTCBC---------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCC-----SSHHHH
T ss_pred CCEEEEeccCcccccCCCCc-cccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCC-----CCHHHH
Confidence 99999999998765433221 1234579999999999988775 8899999999999999999999953 222222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.......... .+......+.+++.+|++.||++|||+.|++++
T Consensus 219 ~~~i~~~~~~-----------~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 219 YKKIMRGKYD-----------VPKWLSPSSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp HHHHHHTCCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred HHHHHcCCCC-----------CCCCCCHHHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 2222222111 111233457789999999999999999999964
No 56
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=4.7e-40 Score=357.00 Aligned_cols=251 Identities=25% Similarity=0.364 Sum_probs=205.7
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|.. .+++.||||++.. ......+.+.+|+.++++++||||++
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----------------~~~~~~~~~~~E~~~l~~l~hp~iv~ 81 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL-----------------QQQPKKELIINEILVMRENKNPNIVN 81 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEG-----------------GGCSCHHHHHHHHHHHHHCCCTTBCC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeec-----------------ccccHHHHHHHHHHHHhcCCCCCCCe
Confidence 47899999999999999999995 4799999999831 12234567889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++|+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 82 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~ 155 (297)
T 3fxz_A 82 YLDSYLVGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSV 155 (297)
T ss_dssp EEEEEEETTEEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCE
T ss_pred EeEEEEECCEEEEEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCE
Confidence 999999999999999999999999999863 5889999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||++......... .....||+.|+|||++.+..++.++|||||||++|||++|+.||... +........
T Consensus 156 kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~~~~ 228 (297)
T 3fxz_A 156 KLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE-----NPLRALYLI 228 (297)
T ss_dssp EECCCTTCEECCSTTCC--BCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHH
T ss_pred EEeeCCCceecCCcccc--cCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHH
Confidence 99999999876544322 23457999999999999999999999999999999999999999532 111111111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
...... . ...+......+.+++.+||+.||++|||+.|++++
T Consensus 229 ~~~~~~-------~-~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 270 (297)
T 3fxz_A 229 ATNGTP-------E-LQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 270 (297)
T ss_dssp HHHCSC-------C-CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred HhCCCC-------C-CCCccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 111100 0 01122334568889999999999999999999874
No 57
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=364.41 Aligned_cols=255 Identities=24% Similarity=0.384 Sum_probs=207.6
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|.+.+.||+|+||+||+|... +++.||+|++... .......+.+|++++++++||||+++
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~-----------------~~~~~~~~~~E~~~l~~l~hp~iv~~ 72 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF-----------------DEETQRTFLKEVKVMRCLEHPNVLKF 72 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC-----------------CHHHHHHHHHHHHHHTTCCCTTBCCE
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC-----------------CHHHHHHHHHHHHHHHhCCCcCcccE
Confidence 67888999999999999999965 6899999987311 12344678999999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++.+++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 73 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~k 148 (310)
T 3s95_A 73 IGVLYKDKRLNFITEYIKGGTLRGIIKSM-DSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVV 148 (310)
T ss_dssp EEEEEETTEEEEEEECCTTCBHHHHHHHC-CTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEE
T ss_pred EEEEecCCeeEEEEEecCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEE
Confidence 99999999999999999999999999873 346899999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcc------------eecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 002250 788 IADFGLAKIVQTGEAGDL------------THVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGD 855 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~ 855 (947)
|+|||+++.......... .....||+.|+|||++.+..++.++||||||+++|||++|..||......
T Consensus 149 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~ 228 (310)
T 3s95_A 149 VADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPR 228 (310)
T ss_dssp ECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCB
T ss_pred EeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhh
Confidence 999999987644322110 11356999999999999999999999999999999999999998543211
Q ss_pred c----ccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 856 S----KDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 856 ~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
. ........ . ..+...+..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 229 ~~~~~~~~~~~~~--------------~---~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~ 281 (310)
T 3s95_A 229 TMDFGLNVRGFLD--------------R---YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLR 281 (310)
T ss_dssp CTTSSBCHHHHHH--------------H---TCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccc--------------c---cCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 1 11111110 0 011223346888999999999999999999999999865
No 58
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=3e-41 Score=379.29 Aligned_cols=258 Identities=24% Similarity=0.309 Sum_probs=207.6
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||+||+|+.. +++.||||++.... .......|.+|++++++++||||+++
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~hpniv~~ 177 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL----------------PPDLKAKFLQEARILKQYSHPNIVRL 177 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS----------------CHHHHTTTTHHHHHHTTCCCTTBCCE
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC----------------CHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 67888999999999999999976 78999999984211 11223468899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++..++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 178 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~k 253 (377)
T 3cbl_A 178 IGVCTQKQPIYIVMELVQGGDFLTFLRTE-GARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLK 253 (377)
T ss_dssp EEEECSSSSCEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEE
T ss_pred EEEEecCCCcEEEEEcCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEE
Confidence 99999999999999999999999999863 345899999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhh
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~ 866 (947)
|+|||+++...............+++.|+|||++..+.++.++|||||||++|||++ |..||... ......+.+.
T Consensus 254 l~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~--~~~~~~~~~~-- 329 (377)
T 3cbl_A 254 ISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNL--SNQQTREFVE-- 329 (377)
T ss_dssp ECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTS--CHHHHHHHHH--
T ss_pred ECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHH--
Confidence 999999986543321111112235778999999998899999999999999999999 99998532 1111222111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
... ..+.+..++..+.+++.+||+.||++|||+.++++.|+++.
T Consensus 330 --~~~---------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 330 --KGG---------RLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp --TTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --cCC---------CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 111 11122234557889999999999999999999999998764
No 59
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.9e-40 Score=354.92 Aligned_cols=257 Identities=23% Similarity=0.314 Sum_probs=210.1
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||+||+|+.+++..||||++... ......+.+|++++++++||||++++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~h~~i~~~~ 69 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG------------------SMSEDEFFQEAQTMMKLSHPKLVKFY 69 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBT------------------TBCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccC------------------CCcHHHHHHHHHHHHhCCCCCEeeEE
Confidence 678899999999999999999998889999998421 12346789999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++..++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 70 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l 145 (268)
T 3sxs_A 70 GVCSKEYPIYIVTEYISNGCLLNYLRSH-GKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKV 145 (268)
T ss_dssp EEECSSSSEEEEEECCTTCBHHHHHHHH-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEE
T ss_pred EEEccCCceEEEEEccCCCcHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEE
Confidence 9999999999999999999999999864 345899999999999999999999 899999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
+|||.+......... ......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||... ...+......
T Consensus 146 ~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~ 219 (268)
T 3sxs_A 146 SDFGMTRYVLDDQYV-SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY-----TNSEVVLKVS 219 (268)
T ss_dssp CCTTCEEECCTTCEE-ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHHH
T ss_pred ccCccceecchhhhh-cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcccc-----ChHHHHHHHH
Confidence 999999876544321 1223346778999999998889999999999999999999 99998432 1111111111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
.... ...+...+..+.+++.+|++.||++|||+.|+++.|+++...
T Consensus 220 ~~~~----------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 220 QGHR----------LYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp TTCC----------CCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred cCCC----------CCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 1111 011112234688899999999999999999999999998754
No 60
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=2.2e-40 Score=363.85 Aligned_cols=255 Identities=25% Similarity=0.341 Sum_probs=205.3
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.. +++.||||++.... .....+.+.+|+.+++.++||||++
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~hpnIv~ 69 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR----------------AVDCPENIKKEICINKMLNHENVVK 69 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-----------------------CHHHHHHHHHHCCCTTBCC
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccc----------------ccchHHHHHHHHHHHHhCCCCCCCe
Confidence 578999999999999999999966 78999999984211 1122356889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+++..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 70 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~ 144 (323)
T 3tki_A 70 FYGHRREGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNL 144 (323)
T ss_dssp EEEEEECSSEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCE
T ss_pred EEEEEecCCeEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCE
Confidence 999999999999999999999999999763 45899999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||+++...............||+.|+|||++.+..+ +.++|||||||++|||++|+.||............+...
T Consensus 145 kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~ 224 (323)
T 3tki_A 145 KISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK 224 (323)
T ss_dssp EECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTT
T ss_pred EEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcc
Confidence 9999999987654433333335679999999999987775 678999999999999999999996543333333222211
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
. .. ..........+.+++.+|++.||++|||+.|++++
T Consensus 225 ~----~~---------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 225 K----TY---------LNPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp C----TT---------STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred c----cc---------CCccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0 00 00112234557789999999999999999999875
No 61
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=3.2e-40 Score=362.57 Aligned_cols=250 Identities=25% Similarity=0.339 Sum_probs=204.9
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+. .+|+.||||++.... ......+.+.+|+++++.++||||++
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~hpnIv~ 78 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQ---------------LNPTSLQKLFREVRIMKILNHPNIVK 78 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG---------------SCHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhc---------------CCHHHHHHHHHHHHHHHhCCCCCEee
Confidence 57899999999999999999996 579999999983211 11123456889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..|+||||+++|+|.+++... ..+++.....++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 79 l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~ 153 (328)
T 3fe3_A 79 LFEVIETEKTLYLIMEYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNI 153 (328)
T ss_dssp EEEEEECSSEEEEEECCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCE
T ss_pred EEEEEEECCEEEEEEECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCE
Confidence 999999999999999999999999999764 35889999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCC-CccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKIN-EKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||+++...... .....+||+.|+|||++.+..++ .++||||+||++|||++|+.||... +.......
T Consensus 154 kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~~~ 225 (328)
T 3fe3_A 154 KIADFGFSNEFTVGG---KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ-----NLKELRER 225 (328)
T ss_dssp EECSTTCCGGGSSSC---GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEeeccCceecCCCC---ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC-----CHHHHHHH
Confidence 999999997654432 22345799999999999888765 7899999999999999999999532 22222222
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
....... .+......+.+++.+|++.||.+|||+.|++++
T Consensus 226 i~~~~~~-----------~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 226 VLRGKYR-----------IPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp HHHCCCC-----------CCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred HHhCCCC-----------CCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 2221111 111234567889999999999999999999875
No 62
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=365.69 Aligned_cols=261 Identities=25% Similarity=0.369 Sum_probs=207.5
Q ss_pred hhccCCcccccccCceeEEEEEeC----CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN----SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.++|++.+.||+|+||+||+|+.. .+..||||++.... .....+.+.+|+.++++++|||
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~~ 111 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY----------------TERQRRDFLSEASIMGQFDHPN 111 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC----------------CHHHHHHHHHHHHHHTTCCCTT
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC----------------CHHHHHHHHHHHHHHHhCCCCC
Confidence 467889999999999999999974 34569999984211 1123467889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 112 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~ 187 (325)
T 3kul_A 112 IIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTH-DGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSN 187 (325)
T ss_dssp BCCEEEEECGGGCCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTT
T ss_pred CCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCC
Confidence 999999999999999999999999999999763 346899999999999999999999 8999999999999999999
Q ss_pred CCeEEeccccceecccCCCCc-ceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGD-LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~ 861 (947)
+.+||+|||+++......... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||... ...+...
T Consensus 188 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~ 265 (325)
T 3kul_A 188 LVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM--TNRDVIS 265 (325)
T ss_dssp CCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS--CHHHHHH
T ss_pred CCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC--CHHHHHH
Confidence 999999999998765433221 1223346788999999998899999999999999999999 99998532 1111221
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
.+ .... ....+...+..+.+++.+||+.||++|||+.|+++.|+++...
T Consensus 266 ~~---~~~~----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~ 314 (325)
T 3kul_A 266 SV---EEGY----------RLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS 314 (325)
T ss_dssp HH---HTTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HH---HcCC----------CCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence 11 1110 1112223456788999999999999999999999999987544
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.1e-40 Score=358.52 Aligned_cols=283 Identities=28% Similarity=0.505 Sum_probs=231.3
Q ss_pred CcccccccCCccccccccCCCCCcc--cceeeeCCC---CceeEeccCCCcccc--ccCcccccCCcccceeeccC-ccc
Q 002250 2 NLKSKIEKSDTGVFSSWTEANSVCK--FNGIVCDSN---GLVAEINLPEQQLLG--VVPFDSICGLQALQKINLGT-NFL 73 (947)
Q Consensus 2 ~~k~~~~~~~~~~~~sw~~~~~~C~--w~gv~c~~~---~~v~~l~l~~~~~~~--~~~~~~~~~l~~L~~L~L~~-n~i 73 (947)
.||.++ +++..+++|..++|||. |.||+|+.. ++|+.++|+++++.+ .+| ..+.++++|+.|+|++ |.+
T Consensus 13 ~~k~~~--~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l 89 (313)
T 1ogq_A 13 QIKKDL--GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNL 89 (313)
T ss_dssp HHHHHT--TCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTE
T ss_pred HHHHhc--CCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcc
Confidence 578777 34458999998899999 999999964 789999888888887 666 5788888888888884 778
Q ss_pred cCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCCh
Q 002250 74 YGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPM 152 (947)
Q Consensus 74 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 152 (947)
.+.+|..|..+++|++|+|++|++++..|. +..+++|++|+|++|.+++.+ |.
T Consensus 90 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------------------------p~ 143 (313)
T 1ogq_A 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--------------------------PP 143 (313)
T ss_dssp ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC--------------------------CG
T ss_pred cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC--------------------------Ch
Confidence 778888888888888888888877754443 555555555555555555433 44
Q ss_pred hhcccccCcEEEccCccccccCCccCCCCC-CCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCC
Q 002250 153 EVLKLEKLYWLYLTNCSVTGQIPEGIGNLT-QLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTN 231 (947)
Q Consensus 153 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 231 (947)
.+..+++|++|+|++|.+++.+|..+..++ +|++|+|++|++++.+|..+..++ |++|+|++|.+++..|..|..+++
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 555666666666666677777888888887 889999999998888888888887 999999999998888888999999
Q ss_pred ccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccc
Q 002250 232 LMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSEN 311 (947)
Q Consensus 232 L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 311 (947)
|++|+|++|++++.++.+..+++|++|+|++|++++.+|..|..+++|++|+|++|++++.+|.. +.+++|+.|++++|
T Consensus 223 L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred CCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 99999999999887777888999999999999999999999999999999999999999999987 89999999999999
Q ss_pred c-ccC
Q 002250 312 L-LTG 315 (947)
Q Consensus 312 ~-l~~ 315 (947)
+ +.|
T Consensus 302 ~~lc~ 306 (313)
T 1ogq_A 302 KCLCG 306 (313)
T ss_dssp SEEES
T ss_pred CCccC
Confidence 8 443
No 64
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.4e-40 Score=356.22 Aligned_cols=256 Identities=23% Similarity=0.313 Sum_probs=208.6
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||+||+|...+++.||||++... ....+.+.+|++++++++||||++++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~h~~i~~~~ 71 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG------------------AMSEEDFIEEAEVMMKLSHPKLVQLY 71 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT------------------SBCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccc------------------ccCHHHHHHHHHHHHhCCCCCEeeEE
Confidence 578889999999999999999988999999998421 12346789999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++.+++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 72 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl 147 (269)
T 4hcu_A 72 GVCLEQAPICLVFEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKV 147 (269)
T ss_dssp EEECSSSSEEEEEECCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEE
T ss_pred EEEecCCceEEEEEeCCCCcHHHHHHhc-CcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEe
Confidence 9999999999999999999999999763 346899999999999999999999 899999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
+|||+++........ ......+|+.|+|||++....++.++||||+|+++|||++ |+.||... ...+......
T Consensus 148 ~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~-----~~~~~~~~~~ 221 (269)
T 4hcu_A 148 SDFGMTRFVLDDQYT-SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-----SNSEVVEDIS 221 (269)
T ss_dssp CCTTGGGGBCCHHHH-STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHH
T ss_pred ccccccccccccccc-cccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHHh
Confidence 999999765432211 1123356788999999998899999999999999999999 89998432 1112211111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
.... ...+...+..+.+++.+|++.||++|||+.|++++|+++..
T Consensus 222 ~~~~----------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 222 TGFR----------LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp TTCC----------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCcc----------CCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 1110 11112234568899999999999999999999999998653
No 65
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.2e-39 Score=360.15 Aligned_cols=260 Identities=23% Similarity=0.293 Sum_probs=208.4
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.+.|++.+.||+|+||+||+|+.+ +|+.||||++....... .......+.+.+|+.++++++|||
T Consensus 8 ~~~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~-----------~~~~~~~~~~~~E~~il~~l~hpn 76 (361)
T 2yab_A 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRA-----------SRRGVCREEIEREVSILRQVLHPN 76 (361)
T ss_dssp SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTT-----------CSSSBCHHHHHHHHHHHTTCCCTT
T ss_pred CChhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEcccccc-----------ccchhHHHHHHHHHHHHHhCCCcC
Confidence 445678999999999999999999976 68999999995432211 111123567899999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..+...++||||+++|+|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+||+++.+
T Consensus 77 Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~ 151 (361)
T 2yab_A 77 IITLHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDK 151 (361)
T ss_dssp BCCEEEEEECSSEEEEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCT
T ss_pred CCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCC
Confidence 999999999999999999999999999999763 46899999999999999999999 8999999999999999887
Q ss_pred C----CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 784 W----KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 784 ~----~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
+ .+||+|||++........ .....||+.|+|||++.+..++.++||||+||++|||++|..||... ..
T Consensus 152 ~~~~~~vkl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~-----~~ 223 (361)
T 2yab_A 152 NIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TK 223 (361)
T ss_dssp TSSSCCEEECCCSSCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SH
T ss_pred CCCccCEEEEecCCceEcCCCCc---cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC-----CH
Confidence 6 799999999987654332 23457999999999999889999999999999999999999999532 12
Q ss_pred HHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 860 VNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.+...........+ + .+........+.+++.+|+..||++|||+.|+++
T Consensus 224 ~~~~~~i~~~~~~~----~---~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 224 QETLANITAVSYDF----D---EEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp HHHHHHHHTTCCCC----C---HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHhcCCCC----C---chhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 22222211111110 0 0111123456788999999999999999999985
No 66
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=6.4e-40 Score=357.62 Aligned_cols=264 Identities=29% Similarity=0.433 Sum_probs=203.4
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|++.+.||+|+||+||+|+.. ..+|||+++... ......+.+.+|++++++++||||+++
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~---------------~~~~~~~~~~~E~~~l~~l~h~~iv~~ 97 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVD---------------PTPEQFQAFRNEVAVLRKTRHVNILLF 97 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSS---------------CCHHHHHHHHHHHHHHTTCCCTTBCCE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCC---------------CCHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 368899999999999999999865 369999874211 111234678899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++. .+..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 98 ~~~~~-~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~k 172 (307)
T 3lb7_A 98 MGYMT-KDNLAIVTQWCEGSSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVK 172 (307)
T ss_dssp EEEEC-SSSCEEEEECCSSCBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEE
T ss_pred EEEEc-cCcEEEEEecCCCCcHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEE
Confidence 99875 45689999999999999999753 456899999999999999999999 88999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY---TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVY 864 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~ 864 (947)
|+|||+++...............||+.|+|||++. ...++.++||||||+++|||++|+.||..... .........
T Consensus 173 l~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~-~~~~~~~~~ 251 (307)
T 3lb7_A 173 IGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-RDQIIFMVG 251 (307)
T ss_dssp ECCCCSSCC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HHHHHHHHH
T ss_pred EccCCCceecccccccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCc-HHHHHHHHh
Confidence 99999998654333222333457999999999986 56688899999999999999999999954321 111111111
Q ss_pred hhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 865 SKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 865 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
.. ...+.+......++..+.+++.+||+.+|++||++.|+++.|+.+...
T Consensus 252 ~~---------~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~ 301 (307)
T 3lb7_A 252 RG---------YASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp HT---------CCCCCSTTSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred cC---------CCCcchhhhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhh
Confidence 11 111222233334456788999999999999999999999999986543
No 67
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1.9e-40 Score=365.52 Aligned_cols=263 Identities=24% Similarity=0.312 Sum_probs=204.9
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcE----EEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKE----LAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
++|++.+.||+|+||+||+|+.. +++. ||+|.+... ........+.+|+.++++++|||
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~----------------~~~~~~~~~~~E~~~l~~l~h~~ 78 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA----------------TSPKANKEILDEAYVMASVDNPH 78 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-----------------------CHHHHHHHHHHHHHCCBTT
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc----------------cCHHHHHHHHHHHHHHHhCCCCC
Confidence 67889999999999999999954 4444 578876311 12244577999999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..+. .++|+||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 79 iv~~~~~~~~~~-~~~v~e~~~~g~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~ 153 (327)
T 3poz_A 79 VCRLLGICLTST-VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTP 153 (327)
T ss_dssp BCCEEEEEESSS-EEEEEECCTTCBHHHHHHHS-TTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEET
T ss_pred EeEEEEEEecCC-eEEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCC
Confidence 999999998754 78999999999999999874 346899999999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
+.+||+|||+|+...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||... ....+...
T Consensus 154 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~ 231 (327)
T 3poz_A 154 QHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSI 231 (327)
T ss_dssp TEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHH
T ss_pred CCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCC--CHHHHHHH
Confidence 9999999999987655444333334567889999999999999999999999999999999 99998543 22223222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCCcce
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCSVTN 927 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~~~~ 927 (947)
+.... ....+...+..+.+++.+||+.||++|||+.|++++|+.+...+...
T Consensus 232 ~~~~~-------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~~~~~ 283 (327)
T 3poz_A 232 LEKGE-------------RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARDPQRY 283 (327)
T ss_dssp HHTTC-------------CCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTSHHHH
T ss_pred HHcCC-------------CCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhhhhhh
Confidence 21111 01112233456889999999999999999999999999877655433
No 68
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=353.77 Aligned_cols=270 Identities=18% Similarity=0.256 Sum_probs=212.2
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||+||+|+.. +++.||||++.. .......+.+.+|++++++++||||+++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~----------------~~~~~~~~~~~~E~~~l~~l~h~~iv~~ 72 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNN----------------ISFLRPVDVQMREFEVLKKLNHKNIVKL 72 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECG----------------GGGGSCHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEecc----------------ccccchHHHHHHHHHHHHhcCCCCcceE
Confidence 67899999999999999999976 589999999831 1112345678899999999999999999
Q ss_pred EEEEecCC--ccEEEEeccCCCChHHHhhhcCC-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe----
Q 002250 708 YCSITSED--SNLLVYEYLPNGSLWDRLHTCHK-IEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL---- 780 (947)
Q Consensus 708 ~~~~~~~~--~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll---- 780 (947)
++++.... ..++||||+++++|.+++..... ..+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 73 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~ 149 (319)
T 4euu_A 73 FAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGE 149 (319)
T ss_dssp EEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECT
T ss_pred EEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccC
Confidence 99998765 66999999999999999986432 34899999999999999999999 8999999999999999
Q ss_pred cCCCCeEEeccccceecccCCCCcceecccccccccCccccc--------cCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY--------TCKINEKSDVYSFGVVLMELVTGKRPIVPE 852 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~slGv~l~elltg~~p~~~~ 852 (947)
+.++.+||+|||+++....... .....||+.|+|||++. +..++.++|||||||++|||++|+.||...
T Consensus 150 ~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 226 (319)
T 4euu_A 150 DGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF 226 (319)
T ss_dssp TSCEEEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECT
T ss_pred CCCceEEEccCCCceecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 7788899999999987654432 22346899999999986 467899999999999999999999999643
Q ss_pred CCCcccHHHHHHhhccccc--cccc---------cccCCC---CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 002250 853 FGDSKDIVNWVYSKMDSRD--SMLT---------VVDPNI---SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLE 918 (947)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~--~~~~---------~~d~~~---~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~ 918 (947)
..... ..+.+........ .+.. ...+.+ ..........+.+++.+|++.||++|||+.|++++..
T Consensus 227 ~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~ 305 (319)
T 4euu_A 227 EGPRR-NKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS 305 (319)
T ss_dssp TCGGG-CHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred Cccch-hHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence 32211 1122222211110 0000 000111 2345677888999999999999999999999999988
Q ss_pred ccC
Q 002250 919 EAE 921 (947)
Q Consensus 919 ~~~ 921 (947)
+..
T Consensus 306 d~~ 308 (319)
T 4euu_A 306 DIL 308 (319)
T ss_dssp HHT
T ss_pred HHh
Confidence 654
No 69
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-40 Score=368.73 Aligned_cols=263 Identities=25% Similarity=0.366 Sum_probs=211.3
Q ss_pred hhccCCcccccccCceeEEEEEeC------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH 701 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 701 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++.... .......+.+|+.++++++|
T Consensus 46 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h 109 (343)
T 1luf_A 46 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA----------------SADMQADFQREAALMAEFDN 109 (343)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC----------------CHHHHHHHHHHHHHHHTCCC
T ss_pred HHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc----------------CHHHHHHHHHHHHHHHhCCC
Confidence 468899999999999999999964 34889999984211 11234678999999999999
Q ss_pred cccceEEEEEecCCccEEEEeccCCCChHHHhhhcC----------------------CccCCHHHHHHHHHHHHHHHHH
Q 002250 702 VNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH----------------------KIEMDWVVRYAIAVGAAKGLEY 759 (947)
Q Consensus 702 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~----------------------~~~~~~~~~~~i~~~ia~~l~y 759 (947)
|||+++++++..++..++||||+++|+|.+++.... ...+++..++.++.|++.||+|
T Consensus 110 p~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~ 189 (343)
T 1luf_A 110 PNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAY 189 (343)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998642 1568999999999999999999
Q ss_pred HhcCCCCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHH
Q 002250 760 LHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVL 839 (947)
Q Consensus 760 LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l 839 (947)
|| +.+|+||||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++
T Consensus 190 LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il 266 (343)
T 1luf_A 190 LS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVL 266 (343)
T ss_dssp HH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HH---hCCeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHH
Confidence 99 889999999999999999999999999999866543332333345688999999999988999999999999999
Q ss_pred HHHHh-CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 002250 840 MELVT-GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLE 918 (947)
Q Consensus 840 ~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~ 918 (947)
|||++ |..||... ...+........ .....+...+..+.+++.+||+.||++|||+.+++++|+
T Consensus 267 ~el~t~g~~p~~~~-----~~~~~~~~~~~~----------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~ 331 (343)
T 1luf_A 267 WEIFSYGLQPYYGM-----AHEEVIYYVRDG----------NILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQ 331 (343)
T ss_dssp HHHHTTTCCTTTTS-----CHHHHHHHHHTT----------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHhcCCCcCCCC-----ChHHHHHHHhCC----------CcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHH
Confidence 99999 99998532 111221111111 111222334567889999999999999999999999999
Q ss_pred ccCCCC
Q 002250 919 EAEPCS 924 (947)
Q Consensus 919 ~~~~~~ 924 (947)
++....
T Consensus 332 ~~~~~~ 337 (343)
T 1luf_A 332 RMCERA 337 (343)
T ss_dssp HTTC--
T ss_pred HHHhhh
Confidence 987654
No 70
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.1e-40 Score=373.37 Aligned_cols=261 Identities=23% Similarity=0.366 Sum_probs=198.5
Q ss_pred hhccCCcccccccCceeEEEEEeC----CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN----SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.++|++.+.||+|+||.||+|+.. ++..||||++.... .....+.|.+|+.++++++|||
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~n 107 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY----------------TEKQRRDFLGEASIMGQFDHPN 107 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC----------------CHHHHHHHHHHHHHHTTCCCTT
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc----------------CHHHHHHHHHHHHHHHhCCCCC
Confidence 468999999999999999999864 57789999984211 1123467899999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..++..++||||+++|+|.++++.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 108 iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~ 183 (373)
T 2qol_A 108 IIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH-DAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSN 183 (373)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTT
T ss_pred CCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCC
Confidence 999999999999999999999999999999863 346899999999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCc-ceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGD-LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~ 861 (947)
+.+||+|||+++......... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||... .......
T Consensus 184 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~--~~~~~~~ 261 (373)
T 2qol_A 184 LVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM--SNQDVIK 261 (373)
T ss_dssp CCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC--CHHHHHH
T ss_pred CCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHH
Confidence 999999999998765432211 1112245778999999999999999999999999999998 99998532 1122222
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
.+... .. .+.+...+..+.+++.+||+.||++||++.|++++|+++...
T Consensus 262 ~i~~~----~~---------~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 262 AVDEG----YR---------LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp HHHTT----EE---------CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHcC----CC---------CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 11111 00 111223456788999999999999999999999999987543
No 71
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.4e-40 Score=354.61 Aligned_cols=265 Identities=24% Similarity=0.335 Sum_probs=207.6
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ......+.+.+|+.++++++||||++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--------------~~~~~~~~~~~e~~~l~~l~hp~iv~ 75 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPR--------------EKEETLKRFEREVHNSSQLSHQNIVS 75 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSS--------------CCHHHHHHHHHHHHHHTTCCBTTBCC
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCcc--------------ccHHHHHHHHHHHHHHhcCCCCCCce
Confidence 468999999999999999999965 689999999843211 11123467889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 76 ~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~ 150 (294)
T 4eqm_A 76 MIDVDEEDDCYYLVMEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTL 150 (294)
T ss_dssp EEEEEECSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCE
T ss_pred EEEeeeeCCeEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCE
Confidence 999999999999999999999999999874 35899999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||+++........ ......||+.|+|||++.+..++.++||||+|+++|||++|+.||... .........
T Consensus 151 kl~Dfg~~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-----~~~~~~~~~ 224 (294)
T 4eqm_A 151 KIFDFGIAKALSETSLT-QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE-----TAVSIAIKH 224 (294)
T ss_dssp EECCCSSSTTC--------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSS-----CHHHHHHHH
T ss_pred EEEeCCCcccccccccc-ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHH
Confidence 99999999765433221 223456999999999999999999999999999999999999999532 122221122
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHhhccCCC
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP-SMRVVVQMLEEAEPC 923 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-t~~ev~~~L~~~~~~ 923 (947)
...... ..........+..+.+++.+|++.||++|| ++.++.+.|+.+...
T Consensus 225 ~~~~~~------~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 225 IQDSVP------NVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp HSSCCC------CHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred hhccCC------CcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence 111110 000112233456788999999999999998 999999999986544
No 72
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=372.69 Aligned_cols=263 Identities=22% Similarity=0.308 Sum_probs=210.6
Q ss_pred hhccCCcccccccCceeEEEEEeC------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH 701 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 701 (947)
.++|++.+.||+|+||+||+|+.. +++.||||++.... .......+.+|+.++++++|
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h 133 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC----------------SEQDELDFLMEALIISKFNH 133 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC----------------CHHHHHHHHHHHHHHHHCCC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc----------------ChhhHHHHHHHHHHHHhCCC
Confidence 367889999999999999999943 46789999983211 11234568899999999999
Q ss_pred cccceEEEEEecCCccEEEEeccCCCChHHHhhhcCC-----ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCC
Q 002250 702 VNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHK-----IEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSS 776 (947)
Q Consensus 702 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~ 776 (947)
|||+++++++..+...++||||+++|+|.+++..... ..+++..++.++.|++.||+||| +.+|+||||||+
T Consensus 134 pnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~ 210 (367)
T 3l9p_A 134 QNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAAR 210 (367)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGG
T ss_pred CCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChh
Confidence 9999999999999999999999999999999986432 45899999999999999999999 899999999999
Q ss_pred CeEecCCC---CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 002250 777 NILLDLEW---KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPE 852 (947)
Q Consensus 777 NIll~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~ 852 (947)
|||++.++ .+||+|||+|+...............||+.|+|||++.+..++.++|||||||++|||++ |..||...
T Consensus 211 NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~ 290 (367)
T 3l9p_A 211 NCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK 290 (367)
T ss_dssp GEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred hEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999554 599999999986544333333345568999999999999999999999999999999998 99998432
Q ss_pred CCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCC
Q 002250 853 FGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCS 924 (947)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~ 924 (947)
....+...+ .... ....+...+..+.+++.+||+.||++|||+.+++++|+.+...+
T Consensus 291 --~~~~~~~~i---~~~~----------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 291 --SNQEVLEFV---TSGG----------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp --CHHHHHHHH---HTTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred --CHHHHHHHH---HcCC----------CCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 112222211 1111 11112233456889999999999999999999999999876554
No 73
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=1.8e-40 Score=382.24 Aligned_cols=257 Identities=26% Similarity=0.405 Sum_probs=209.9
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||+||+|..++++.||||++.+. ....+.|.+|+.++++++||||++++
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~h~~iv~l~ 249 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG------------------SMSVEAFLAEANVMKTLQHDKLVKLH 249 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT------------------SBCHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC------------------CccHHHHHHHHHHHhhCCCCCEeeEE
Confidence 678889999999999999999988899999998421 13457899999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++. .+..++||||+++|+|.++++......+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||
T Consensus 250 ~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl 325 (454)
T 1qcf_A 250 AVVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKI 325 (454)
T ss_dssp EEEC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEE
T ss_pred EEEe-CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEE
Confidence 9987 567899999999999999998655556889999999999999999999 889999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
+|||+++........ ......+|+.|+|||++..+.++.++|||||||++|||+| |+.||... ...+....+..
T Consensus 326 ~DFG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~--~~~~~~~~i~~-- 400 (454)
T 1qcf_A 326 ADFGLARVIEDNEYT-AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM--SNPEVIRALER-- 400 (454)
T ss_dssp CSTTGGGGBCCHHHH-TTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHHHHHHHHHH--
T ss_pred eeCCCceEcCCCcee-ccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHc--
Confidence 999999865432111 1122346789999999998999999999999999999999 99998532 11222221111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
. . ..+.+..++..+.+++.+||+.||++|||+.++++.|+++...
T Consensus 401 -~-~---------~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 401 -G-Y---------RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp -T-C---------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred -C-C---------CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 1 0 0111233456788999999999999999999999999987643
No 74
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1.8e-39 Score=353.66 Aligned_cols=264 Identities=24% Similarity=0.332 Sum_probs=205.1
Q ss_pred HhhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhh--cccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSA--VRHVNV 704 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~ni 704 (947)
+.++|++.+.||+|+||+||+|+. +++.||||++.. .....+.+|.+++.. ++||||
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~--------------------~~~~~~~~e~~~~~~~~l~h~ni 64 (301)
T 3q4u_A 6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSS--------------------RDEKSWFRETELYNTVMLRHENI 64 (301)
T ss_dssp CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECG--------------------GGHHHHHHHHHHHHHTCCCCTTB
T ss_pred ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecc--------------------ccchhhHHHHHHHHHhhccCcCe
Confidence 357899999999999999999998 489999999831 223455667777666 799999
Q ss_pred ceEEEEEec----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEeccCCC
Q 002250 705 VKLYCSITS----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGF-----DRPVIHRDVKS 775 (947)
Q Consensus 705 v~l~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~-----~~~ivH~Dlkp 775 (947)
+++++++.. ....++||||+++|+|.++++. ..+++..+..++.|++.||+|||... +.+|+||||||
T Consensus 65 v~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp 141 (301)
T 3q4u_A 65 LGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKS 141 (301)
T ss_dssp CCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCG
T ss_pred eeEEEeeccccCCCceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCCh
Confidence 999998654 3457899999999999999965 46899999999999999999999321 57899999999
Q ss_pred CCeEecCCCCeEEeccccceecccCCCCc--ceecccccccccCccccccC------CCCCccchHHHHHHHHHHHhC--
Q 002250 776 SNILLDLEWKPRIADFGLAKIVQTGEAGD--LTHVIAGTHGYIAPEYAYTC------KINEKSDVYSFGVVLMELVTG-- 845 (947)
Q Consensus 776 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slGv~l~elltg-- 845 (947)
+||+++.++.+||+|||+|+......... ......||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 142 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~ 221 (301)
T 3q4u_A 142 KNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMV 221 (301)
T ss_dssp GGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhc
Confidence 99999999999999999998765443211 12234799999999999876 445789999999999999999
Q ss_pred --------CCCCCCCCCCcccHHHHHHhhccccccccccccCCCC--ccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 846 --------KRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNIS--EILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 846 --------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
+.||...................... .+.++ ......+..+.+++.+||+.||++|||+.|+++
T Consensus 222 ~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~ 295 (301)
T 3q4u_A 222 SNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQ------RPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK 295 (301)
T ss_dssp BTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC------CCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred CccccccccccccccCCCCcchhhhhHHHhccCC------CCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence 88886544333333332221111111 11111 123456788999999999999999999999999
Q ss_pred Hhhcc
Q 002250 916 MLEEA 920 (947)
Q Consensus 916 ~L~~~ 920 (947)
.|+++
T Consensus 296 ~L~~i 300 (301)
T 3q4u_A 296 TLTKI 300 (301)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99875
No 75
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.7e-40 Score=358.63 Aligned_cols=253 Identities=20% Similarity=0.311 Sum_probs=205.7
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||+||+|... +++.||+|++... ......+.+|+.+++.++||||+
T Consensus 3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~------------------~~~~~~~~~E~~~l~~l~hpnIv 64 (321)
T 1tki_A 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK------------------GTDQVLVKKEISILNIARHRNIL 64 (321)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC------------------THHHHHHHHHHHHHHHSCCTTBC
T ss_pred hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC------------------cccHHHHHHHHHHHHhCCCCCCC
Confidence 4578999999999999999999966 6889999988311 12345688999999999999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC--C
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL--E 783 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~--~ 783 (947)
++++++.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++. +
T Consensus 65 ~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~ 140 (321)
T 1tki_A 65 HLHESFESMEELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRS 140 (321)
T ss_dssp CEEEEEEETTEEEEEECCCCCCBHHHHHTSS-SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSC
T ss_pred eEeEEEecCCEEEEEEEeCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCC
Confidence 9999999999999999999999999999763 346899999999999999999999 899999999999999987 7
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
+.+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|||++|..||... ...+..
T Consensus 141 ~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~ 212 (321)
T 1tki_A 141 STIKIIEFGQARQLKPGD---NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE-----TNQQII 212 (321)
T ss_dssp CCEEECCCTTCEECCTTC---EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHH
T ss_pred CCEEEEECCCCeECCCCC---ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC-----CHHHHH
Confidence 899999999998765433 233457899999999999888999999999999999999999999532 112222
Q ss_pred HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 864 YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 864 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
........... .+.....+..+.+++.+|++.||++|||+.|++++
T Consensus 213 ~~i~~~~~~~~-------~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 213 ENIMNAEYTFD-------EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp HHHHHTCCCCC-------HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHHHcCCCCCC-------hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 22211111100 00111234568899999999999999999999973
No 76
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=2.9e-39 Score=355.91 Aligned_cols=252 Identities=24% Similarity=0.291 Sum_probs=205.0
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.+ +|+.||||++... ..........+.+|+.+++.++||||++
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~--------------~~~~~~~~~~~~~E~~~l~~l~hp~iv~ 69 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKE--------------VIIAKDEVAHTVTESRVLQNTRHPFLTA 69 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHHSCCCTTBCC
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHH--------------HhhhhhHHHHHHHHHHHHHhCCCCcCcc
Confidence 367899999999999999999966 6999999998311 1112245567889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++...+..|+||||+++|+|.+++... ..+++.....++.||+.||+||| +.+|+||||||+||+++.++.+
T Consensus 70 l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~v 144 (337)
T 1o6l_A 70 LKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHI 144 (337)
T ss_dssp EEEEEECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCE
T ss_pred eEEEEEeCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCE
Confidence 999999999999999999999999999864 35889999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||+++....... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||... +..+.....
T Consensus 145 kL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i 217 (337)
T 1o6l_A 145 KITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHERLFELI 217 (337)
T ss_dssp EECCCTTCBCSCCTTC--CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHH
T ss_pred EEeeccchhhcccCCC--cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC-----CHHHHHHHH
Confidence 9999999975432221 223457999999999999999999999999999999999999999532 122222211
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP-----SMRVVVQM 916 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~ev~~~ 916 (947)
..... . ++......+.+++.+|++.||++|| ++.|++++
T Consensus 218 ~~~~~--------~---~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 218 LMEEI--------R---FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp HHCCC--------C---CCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred HcCCC--------C---CCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 11111 1 1222345678899999999999999 89998764
No 77
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=3.4e-40 Score=363.32 Aligned_cols=265 Identities=22% Similarity=0.307 Sum_probs=207.6
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcE----EEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKE----LAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
++|++.+.||+|+||+||+|+.. +++. ||+|++.... .......+.+|+.++++++|||
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~----------------~~~~~~~~~~e~~~l~~l~h~~ 76 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS----------------GRQSFQAVTDHMLAIGSLDHAH 76 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT----------------SCSCBCSCCHHHHHHHTCCCTT
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc----------------cHHHHHHHHHHHHHHhcCCCCC
Confidence 57888999999999999999965 4554 7788763211 1133456778999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++. ++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 77 iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~ 151 (325)
T 3kex_A 77 IVRLLGLCP-GSSLQLVTQYLPLGSLLDHVRQH-RGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSP 151 (325)
T ss_dssp BCCEEEEEC-BSSEEEEEECCTTCBSHHHHHSS-GGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSS
T ss_pred cCeEEEEEc-CCccEEEEEeCCCCCHHHHHHHc-cccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCC
Confidence 999999986 46688999999999999999863 346888899999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
+.+||+|||+++...............||..|+|||++.+..++.++||||||+++|||++ |+.||.... .......
T Consensus 152 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~~~~~~ 229 (325)
T 3kex_A 152 SQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR--LAEVPDL 229 (325)
T ss_dssp SCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC--TTHHHHH
T ss_pred CeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC--HHHHHHH
Confidence 9999999999987765544434445668889999999999999999999999999999999 999985432 2222222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCCcceee
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCSVTNIV 929 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~~~~~~ 929 (947)
+.... . ...+...+..+.+++.+||+.||.+|||+.|++++|+++...+.....
T Consensus 230 ~~~~~----~---------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~~~~~~ 283 (325)
T 3kex_A 230 LEKGE----R---------LAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARDPPRYLV 283 (325)
T ss_dssp HHTTC----B---------CCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSHHHHBC
T ss_pred HHcCC----C---------CCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchhhhc
Confidence 21110 0 111112233577899999999999999999999999998776644443
No 78
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=370.42 Aligned_cols=260 Identities=23% Similarity=0.343 Sum_probs=210.6
Q ss_pred hhccCCcccccccCceeEEEEEeC--------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN--------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV 699 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 699 (947)
.++|.+.+.||+|+||+||+|+.. .+..||||++.... .......+.+|+++++++
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l 131 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA----------------TEKDLSDLISEMEMMKMI 131 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC----------------CHHHHHHHHHHHHHHHHH
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc----------------CHHHHHHHHHHHHHHHHh
Confidence 368889999999999999999852 24579999984211 112346788999999999
Q ss_pred -cccccceEEEEEecCCccEEEEeccCCCChHHHhhhcC--------------CccCCHHHHHHHHHHHHHHHHHHhcCC
Q 002250 700 -RHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH--------------KIEMDWVVRYAIAVGAAKGLEYLHHGF 764 (947)
Q Consensus 700 -~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~i~~~ia~~l~yLH~~~ 764 (947)
+||||+++++++..++..++||||+++|+|.+++.... ...+++..+..++.|++.||+|||
T Consensus 132 ~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH--- 208 (382)
T 3tt0_A 132 GKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA--- 208 (382)
T ss_dssp CCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999998753 235899999999999999999999
Q ss_pred CCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh
Q 002250 765 DRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT 844 (947)
Q Consensus 765 ~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt 844 (947)
+.+|+||||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++
T Consensus 209 ~~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt 288 (382)
T 3tt0_A 209 SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 288 (382)
T ss_dssp HTTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHT
T ss_pred hCCEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999987655443333334567899999999999999999999999999999999
Q ss_pred -CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 845 -GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 845 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
|+.||... ....+...+. .... ...+...+..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 289 ~g~~p~~~~--~~~~~~~~~~---~~~~----------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 351 (382)
T 3tt0_A 289 LGGSPYPGV--PVEELFKLLK---EGHR----------MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 351 (382)
T ss_dssp TSCCSSTTC--CHHHHHHHHH---TTCC----------CCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCC--CHHHHHHHHH---cCCC----------CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 99998432 1122222111 1111 1112233456889999999999999999999999999864
No 79
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.1e-39 Score=375.02 Aligned_cols=251 Identities=27% Similarity=0.370 Sum_probs=207.0
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||.||+|... ++.||||++... ...+.|.+|+.++++++||||++++
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~-------------------~~~~~~~~E~~~l~~l~h~niv~~~ 252 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND-------------------ATAQAFLAEASVMTQLRHSNLVQLL 252 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSC-------------------TTSHHHHHHHHHHHTCCCTTBCCEE
T ss_pred HHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCc-------------------hHHHHHHHHHHHHHhccCCCEEEEE
Confidence 67888999999999999999987 789999998421 2346789999999999999999999
Q ss_pred EEEecCC-ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 709 CSITSED-SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 709 ~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
+++.... ..++||||+++|+|.+++...+...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 253 ~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~k 329 (450)
T 1k9a_A 253 GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAK 329 (450)
T ss_dssp EEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEE
T ss_pred EEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEE
Confidence 9987765 6899999999999999999866556799999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhh
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~ 866 (947)
|+|||+++...... ....+++.|+|||++.+..++.++|||||||++|||+| |+.||.... ..+....+...
T Consensus 330 l~DfG~a~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~--~~~~~~~i~~~ 402 (450)
T 1k9a_A 330 VSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVPRVEKG 402 (450)
T ss_dssp ECCCTTCEECC-----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC--TTTHHHHHHTT
T ss_pred EeeCCCcccccccc-----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHcC
Confidence 99999998543221 12357889999999999999999999999999999999 999985432 22222222111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
...+.+..++..+.+++.+||+.||++|||+.++++.|+++..
T Consensus 403 -------------~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~ 445 (450)
T 1k9a_A 403 -------------YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRT 445 (450)
T ss_dssp -------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -------------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 1112233445678899999999999999999999999987643
No 80
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=6.5e-40 Score=381.09 Aligned_cols=258 Identities=26% Similarity=0.363 Sum_probs=213.6
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||.||+|..+ ++..||||++... ....+.|.+|+.++++++||||+++
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~hpniv~l 281 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED------------------TMEVEEFLKEAAVMKEIKHPNLVQL 281 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS------------------SSCHHHHHHHHHHHHHCCCTTBCCE
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc------------------ccchHHHHHHHHHHHhcCCCCEeeE
Confidence 56888999999999999999977 4889999998421 1345779999999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++..++..++||||+++|+|.+++.......+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+|
T Consensus 282 ~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~k 358 (495)
T 1opk_A 282 LGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVK 358 (495)
T ss_dssp EEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEE
T ss_pred EEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEE
Confidence 999999999999999999999999998866677999999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhh
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~ 866 (947)
|+|||+++....... .......+++.|+|||++....++.++|||||||++|||++ |..||... ....+.+.+...
T Consensus 359 l~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~--~~~~~~~~~~~~ 435 (495)
T 1opk_A 359 VADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEKD 435 (495)
T ss_dssp ECCTTCEECCTTCCE-ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHTT
T ss_pred EeecccceeccCCce-eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHcC
Confidence 999999987643321 11223346789999999998899999999999999999999 88998543 222233222111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
. ..+.+..++..+.+++.+||+.||++|||+.++++.|+.+...
T Consensus 436 ~-------------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~ 479 (495)
T 1opk_A 436 Y-------------RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 479 (495)
T ss_dssp C-------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred C-------------CCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence 1 0112233456788999999999999999999999999987544
No 81
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=1.6e-40 Score=371.80 Aligned_cols=261 Identities=24% Similarity=0.305 Sum_probs=207.8
Q ss_pred hhccCCcccccccCceeEEEEEe------CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-c
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL------NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-R 700 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~ 700 (947)
.++|++.+.||+|+||.||+|++ .+++.||||++.... .....+.+.+|+++++++ +
T Consensus 21 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~~ 84 (359)
T 3vhe_A 21 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----------------THSEHRALMSELKILIHIGH 84 (359)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----------------CHHHHHHHHHHHHHHHHHCC
T ss_pred ccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcC----------------CHHHHHHHHHHHHHHHhhcC
Confidence 47899999999999999999983 246789999984211 112345789999999999 7
Q ss_pred ccccceEEEEEecCCc-cEEEEeccCCCChHHHhhhcCC-----------------------------------------
Q 002250 701 HVNVVKLYCSITSEDS-NLLVYEYLPNGSLWDRLHTCHK----------------------------------------- 738 (947)
Q Consensus 701 h~niv~l~~~~~~~~~-~~lv~e~~~~gsL~~~l~~~~~----------------------------------------- 738 (947)
||||+++++++..++. .++||||+++|+|.+++.....
T Consensus 85 hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3vhe_A 85 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSAS 164 (359)
T ss_dssp CTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------
T ss_pred CcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccc
Confidence 8999999999988655 8999999999999999986432
Q ss_pred -----------------------ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEeccccce
Q 002250 739 -----------------------IEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAK 795 (947)
Q Consensus 739 -----------------------~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 795 (947)
..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~ 241 (359)
T 3vhe_A 165 SGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLAR 241 (359)
T ss_dssp -------------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGS
T ss_pred cccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEecccee
Confidence 12889999999999999999999 8899999999999999999999999999998
Q ss_pred ecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhcccccccc
Q 002250 796 IVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKMDSRDSML 874 (947)
Q Consensus 796 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (947)
...............||+.|+|||++.+..++.++||||||+++|||++ |+.||..... ........... .
T Consensus 242 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~~~~~~----~--- 313 (359)
T 3vhe_A 242 DIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEEFCRRLKEG----T--- 313 (359)
T ss_dssp CTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHHHHHHHHHT----C---
T ss_pred eecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccch-hHHHHHHHHcC----C---
Confidence 7655443333445568999999999999999999999999999999999 9999854321 11222211111 0
Q ss_pred ccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 875 TVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 875 ~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
....+......+.+++.+||+.||++|||+.|++++|+++.
T Consensus 314 ------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 314 ------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ------CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 01112223456889999999999999999999999998753
No 82
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=2.4e-40 Score=364.48 Aligned_cols=282 Identities=23% Similarity=0.299 Sum_probs=195.6
Q ss_pred hccCCcccccccCceeEEEEEeCC-Cc---EEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNS-GK---ELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~-~~---~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
++|++.+.||+|+||+||+|+... ++ .||||++.... ......+.+.+|++++++++||||
T Consensus 23 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~i 87 (323)
T 3qup_A 23 QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADI---------------IASSDIEEFLREAACMKEFDHPHV 87 (323)
T ss_dssp --CEEEEEEEEETTEEEEEEEC-------CEEEEEEC---------------------CHHHHHHHHHHHHHTTCCCTTB
T ss_pred hHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccc---------------cCHHHHHHHHHHHHHHHHCCCCce
Confidence 678999999999999999999653 32 79999984221 112335678999999999999999
Q ss_pred ceEEEEEecCCcc------EEEEeccCCCChHHHhhhcC----CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCC
Q 002250 705 VKLYCSITSEDSN------LLVYEYLPNGSLWDRLHTCH----KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVK 774 (947)
Q Consensus 705 v~l~~~~~~~~~~------~lv~e~~~~gsL~~~l~~~~----~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlk 774 (947)
+++++++...... ++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+|||||
T Consensus 88 v~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dik 164 (323)
T 3qup_A 88 AKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLA 164 (323)
T ss_dssp CCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred ehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCC
Confidence 9999999887665 99999999999999997532 225899999999999999999999 8899999999
Q ss_pred CCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCC
Q 002250 775 SSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEF 853 (947)
Q Consensus 775 p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~ 853 (947)
|+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++ |+.||...
T Consensus 165 p~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~- 243 (323)
T 3qup_A 165 ARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGI- 243 (323)
T ss_dssp GGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-
T ss_pred cceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcccc-
Confidence 9999999999999999999987655443333334457889999999999999999999999999999999 89998543
Q ss_pred CCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCCcceeeecc-
Q 002250 854 GDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCSVTNIVVKK- 932 (947)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~~~~~~~~~- 932 (947)
............ .....+...+..+.+++.+|++.||++|||+.++++.|+++...+...-....
T Consensus 244 -~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~~p 309 (323)
T 3qup_A 244 -ENAEIYNYLIGG-------------NRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQDP 309 (323)
T ss_dssp -CGGGHHHHHHTT-------------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC----------
T ss_pred -ChHHHHHHHhcC-------------CCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCCCCCC
Confidence 122222221111 11112223445688999999999999999999999999987655533222222
Q ss_pred -cccCCCCcCCC
Q 002250 933 -VGESSPSFSRH 943 (947)
Q Consensus 933 -~~~~~~~~~~~ 943 (947)
....+++++||
T Consensus 310 l~~~~~~~~~~~ 321 (323)
T 3qup_A 310 LYINIERAHHHH 321 (323)
T ss_dssp ------------
T ss_pred CCCCCCcCCccC
Confidence 24455555554
No 83
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=5.3e-40 Score=360.25 Aligned_cols=260 Identities=26% Similarity=0.336 Sum_probs=210.8
Q ss_pred hhccCCcccccccCceeEEEEEe------CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL------NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH 701 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 701 (947)
.++|++.+.||+|+||.||+|.. .+++.||||++.... .....+.+.+|++++++++|
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h 85 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA----------------SPSELRDLLSEFNVLKQVNH 85 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC----------------CHHHHHHHHHHHHHHTTCCC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC----------------CHHHHHHHHHHHHHHhhCCC
Confidence 36788999999999999999985 245789999984211 11234678899999999999
Q ss_pred cccceEEEEEecCCccEEEEeccCCCChHHHhhhcCC----------------------ccCCHHHHHHHHHHHHHHHHH
Q 002250 702 VNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHK----------------------IEMDWVVRYAIAVGAAKGLEY 759 (947)
Q Consensus 702 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~----------------------~~~~~~~~~~i~~~ia~~l~y 759 (947)
|||+++++++..++..++||||+++|+|.+++..... ..+++..+..++.|++.||+|
T Consensus 86 p~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~ 165 (314)
T 2ivs_A 86 PHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQY 165 (314)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHH
T ss_pred CceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986432 348899999999999999999
Q ss_pred HhcCCCCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHH
Q 002250 760 LHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVL 839 (947)
Q Consensus 760 LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l 839 (947)
|| +.+|+||||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++
T Consensus 166 lH---~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il 242 (314)
T 2ivs_A 166 LA---EMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLL 242 (314)
T ss_dssp HH---HTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHH
T ss_pred HH---HCCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHH
Confidence 99 889999999999999999999999999999876554332223344578899999999988899999999999999
Q ss_pred HHHHh-CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 002250 840 MELVT-GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLE 918 (947)
Q Consensus 840 ~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~ 918 (947)
|||++ |+.||... ....+...+.... ....+...+..+.+++.+|++.||++|||+.|++++|+
T Consensus 243 ~el~t~g~~p~~~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~ 307 (314)
T 2ivs_A 243 WEIVTLGGNPYPGI--PPERLFNLLKTGH-------------RMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLE 307 (314)
T ss_dssp HHHHTTSCCSSTTC--CGGGHHHHHHTTC-------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHhCCCCCCCCC--CHHHHHHHhhcCC-------------cCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 99999 99998533 2222322221111 11122234467889999999999999999999999998
Q ss_pred ccC
Q 002250 919 EAE 921 (947)
Q Consensus 919 ~~~ 921 (947)
++.
T Consensus 308 ~~~ 310 (314)
T 2ivs_A 308 KMM 310 (314)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 84
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.1e-39 Score=370.73 Aligned_cols=259 Identities=19% Similarity=0.257 Sum_probs=205.0
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.+ +++.||||++... ..........+.+|+.++..++||||++
T Consensus 73 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~--------------~~~~~~~~~~~~~E~~il~~~~hp~Iv~ 138 (437)
T 4aw2_A 73 REDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKW--------------EMLKRAETACFREERDVLVNGDSKWITT 138 (437)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHH--------------HHHHTTTTCCHHHHHHHHHHSCTTTBCC
T ss_pred hhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHH--------------HhhhHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 478999999999999999999976 5789999998311 1112233456889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
++++|.+++..|+||||+++|+|.+++... ...+++.....++.|++.||+||| +.+|+||||||+|||++.++.+
T Consensus 139 l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~-~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~v 214 (437)
T 4aw2_A 139 LHYAFQDDNNLYLVMDYYVGGDLLTLLSKF-EDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHI 214 (437)
T ss_dssp EEEEEECSSEEEEEECCCTTCBHHHHHHTT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCE
T ss_pred EEEEEeeCCEEEEEEecCCCCcHHHHHHHc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCE
Confidence 999999999999999999999999999863 346899999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccc-----cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY-----TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
||+|||+|+........ .....+||+.|+|||++. .+.++.++|||||||++|||++|+.||... +..+
T Consensus 215 kL~DFGla~~~~~~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~-----~~~~ 288 (437)
T 4aw2_A 215 RLADFGSCLKLMEDGTV-QSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE-----SLVE 288 (437)
T ss_dssp EECCCTTCEECCTTSCE-ECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHH
T ss_pred EEcchhhhhhcccCCCc-ccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC-----ChhH
Confidence 99999999866543322 223457999999999987 556899999999999999999999999532 2222
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAF--RPSMRVVVQM 916 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPt~~ev~~~ 916 (947)
........... ..++.........+.+++.+|+..+|++ ||++.|++++
T Consensus 289 ~~~~i~~~~~~------~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 289 TYGKIMNHKER------FQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp HHHHHHTHHHH------CCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred HHHhhhhcccc------ccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence 22221111100 0111111223456788899999988888 9999999864
No 85
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=352.77 Aligned_cols=261 Identities=23% Similarity=0.285 Sum_probs=208.5
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
+.+.+.|++.+.||+|+||.||+|... +|+.||||++....... .......+.+.+|+.++++++|||
T Consensus 7 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-----------~~~~~~~~~~~~E~~~l~~l~hp~ 75 (326)
T 2y0a_A 7 ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKS-----------SRRGVSREDIEREVSILKEIQHPN 75 (326)
T ss_dssp SCHHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTT-----------CSSSBCHHHHHHHHHHHHHCCCTT
T ss_pred CCcccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEcccccc-----------ccchhhHHHHHHHHHHHHhCCCCC
Confidence 445688999999999999999999976 68999999985432111 111224567899999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..+...++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 76 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~ 150 (326)
T 2y0a_A 76 VITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDR 150 (326)
T ss_dssp BCCEEEEEECSSEEEEEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCS
T ss_pred CCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecC
Confidence 999999999999999999999999999999763 46899999999999999999999 8999999999999999988
Q ss_pred C----CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 784 W----KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 784 ~----~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
+ .+||+|||+++....... .....||+.|+|||++....++.++|||||||++|||++|+.||... ..
T Consensus 151 ~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~ 222 (326)
T 2y0a_A 151 NVPKPRIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TK 222 (326)
T ss_dssp SSSSCCEEECCCTTCEECCTTSC---CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SH
T ss_pred CCCCCCEEEEECCCCeECCCCCc---cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC-----CH
Confidence 7 799999999987654332 22457999999999999889999999999999999999999998532 11
Q ss_pred HHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 860 VNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.+............. .......+..+.+++.+|++.||++|||+.|++++
T Consensus 223 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 223 QETLANVSAVNYEFE-------DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp HHHHHHHHHTCCCCC-------HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred HHHHHHHHhcCCCcC-------ccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 111111111111000 01111234567889999999999999999999974
No 86
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=5.7e-40 Score=354.24 Aligned_cols=256 Identities=21% Similarity=0.289 Sum_probs=205.2
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|++.+.||+|+||+||+|...++..||||++... ....+.+.+|++++++++||||+++
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~h~~i~~~ 84 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG------------------SMSEDEFIEEAKVMMNLSHEKLVQL 84 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT------------------SBCHHHHHHHHHHHHTCCCTTBCCE
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC------------------CCCHHHHHHHHHHHhcCCCCCEeeE
Confidence 3678899999999999999999998889999998421 1234678999999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++..++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~k 160 (283)
T 3gen_A 85 YGVCTKQRPIFIITEYMANGCLLNYLREM-RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVK 160 (283)
T ss_dssp EEEECSSSSEEEEECCCTTCBHHHHHHCG-GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEE
T ss_pred EEEEecCCCeEEEEeccCCCcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEE
Confidence 99999999999999999999999999763 345899999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhh
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~ 866 (947)
|+|||+++........ ......+|+.|+|||++....++.++||||+|+++|||++ |+.||... ...+.....
T Consensus 161 l~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~-----~~~~~~~~~ 234 (283)
T 3gen_A 161 VSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF-----TNSETAEHI 234 (283)
T ss_dssp ECSTTGGGGBCCHHHH-STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHH
T ss_pred Eccccccccccccccc-cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc-----ChhHHHHHH
Confidence 9999999765432211 1112346788999999998899999999999999999998 99998532 111111111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
..... ...+...+..+.+++.+||+.||++|||+.|++++|+++.
T Consensus 235 ~~~~~----------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~ 279 (283)
T 3gen_A 235 AQGLR----------LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVM 279 (283)
T ss_dssp HTTCC----------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcccC----------CCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence 11111 1111122356889999999999999999999999998764
No 87
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-39 Score=362.51 Aligned_cols=268 Identities=21% Similarity=0.282 Sum_probs=210.6
Q ss_pred hhccCCcccccccCceeEEEEEe------CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-c
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL------NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-R 700 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~ 700 (947)
.++|++.+.||+|+||.||+|+. .+++.||||++.... .......+.+|+.+++++ +
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~~ 107 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA----------------DSSEREALMSELKMMTQLGS 107 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC----------------------CHHHHHHHHHHHHHCC
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc----------------CHHHHHHHHHHHHHHHhhcC
Confidence 46889999999999999999995 245689999984211 123446789999999999 8
Q ss_pred ccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCC---------------------ccCCHHHHHHHHHHHHHHHHH
Q 002250 701 HVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHK---------------------IEMDWVVRYAIAVGAAKGLEY 759 (947)
Q Consensus 701 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~---------------------~~~~~~~~~~i~~~ia~~l~y 759 (947)
||||+++++++..++..++||||+++|+|.+++..... ..+++..+..++.|++.||+|
T Consensus 108 hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~ 187 (344)
T 1rjb_A 108 HENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEF 187 (344)
T ss_dssp CTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHH
T ss_pred CCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986432 237899999999999999999
Q ss_pred HhcCCCCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHH
Q 002250 760 LHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVL 839 (947)
Q Consensus 760 LH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l 839 (947)
|| +.+|+||||||+||+++.++.+||+|||++................||+.|+|||++.+..++.++||||||+++
T Consensus 188 LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il 264 (344)
T 1rjb_A 188 LE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILL 264 (344)
T ss_dssp HH---HTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HH---hCCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHH
Confidence 99 899999999999999999999999999999876655443334445678899999999999999999999999999
Q ss_pred HHHHh-CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 002250 840 MELVT-GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLE 918 (947)
Q Consensus 840 ~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~ 918 (947)
|||+| |..||..... ...+........ . ...+...+..+.+++.+||+.||.+|||+.|++++|+
T Consensus 265 ~el~t~g~~p~~~~~~-~~~~~~~~~~~~----~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~ 330 (344)
T 1rjb_A 265 WEIFSLGVNPYPGIPV-DANFYKLIQNGF----K---------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 330 (344)
T ss_dssp HHHTTTSCCSSTTCCC-SHHHHHHHHTTC----C---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHcCCCCCcccCCc-HHHHHHHHhcCC----C---------CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence 99998 9999854321 222222221110 0 1112223456889999999999999999999999999
Q ss_pred ccCCCCccee
Q 002250 919 EAEPCSVTNI 928 (947)
Q Consensus 919 ~~~~~~~~~~ 928 (947)
.+........
T Consensus 331 ~~~~~~~~~~ 340 (344)
T 1rjb_A 331 CQLADAEEAM 340 (344)
T ss_dssp HHC-------
T ss_pred HHHHHHHHHH
Confidence 8776554433
No 88
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=2.4e-39 Score=353.96 Aligned_cols=268 Identities=22% Similarity=0.250 Sum_probs=204.8
Q ss_pred HHHhhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
+.+.++|++.+.||+|+||+||+|+..+|+.||||++.... ........+.+|++++++++||||
T Consensus 17 q~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~hp~i 81 (311)
T 3niz_A 17 QGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDA---------------EDEGIPSTAIREISLLKELHHPNI 81 (311)
T ss_dssp ECSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC---------------------CHHHHHHHHHHHHHHCCCTTB
T ss_pred cchHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEeccc---------------ccchhhHHHHHHHHHHHHcCCCCE
Confidence 44568999999999999999999999889999999984221 112234678899999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++++..++..++||||++ |+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 82 v~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~ 156 (311)
T 3niz_A 82 VSLIDVIHSERCLTLVFEFME-KDLKKVLDEN-KTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDG 156 (311)
T ss_dssp CCEEEEECCSSCEEEEEECCS-EEHHHHHHTC-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTC
T ss_pred eeeeeEEccCCEEEEEEcCCC-CCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCC
Confidence 999999999999999999997 5888888763 345899999999999999999999 89999999999999999999
Q ss_pred CeEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
.+||+|||+++....... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...+....
T Consensus 157 ~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~~~i~ 233 (311)
T 3niz_A 157 ALKLADFGLARAFGIPVR--SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTD-DDQLPKIF 233 (311)
T ss_dssp CEEECCCTTCEETTSCCC-----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSST-TTHHHHHH
T ss_pred CEEEccCcCceecCCCcc--cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHH
Confidence 999999999987643322 2224568999999999876 4689999999999999999999999964422 22222221
Q ss_pred Hhhccccc-cccc-------------cccC-CCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 864 YSKMDSRD-SMLT-------------VVDP-NISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 864 ~~~~~~~~-~~~~-------------~~d~-~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
........ .+.. ..+. ...........++.+++.+|++.||++|||+.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 234 SILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 11111000 0000 0000 001112223456889999999999999999999997
No 89
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-39 Score=357.00 Aligned_cols=250 Identities=26% Similarity=0.355 Sum_probs=203.1
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|.. .+++.||||++.. ...........+.+|+.+++.++||||++
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~--------------~~~~~~~~~~~~~~E~~~l~~l~hpnIv~ 73 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISR--------------QLLKKSDMHMRVEREISYLKLLRHPHIIK 73 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH--------------HHHHHTTCSHHHHHHHHHHTTCCCTTBCC
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeh--------------HHccchhHHHHHHHHHHHHHhCCCCCCCe
Confidence 47899999999999999999996 4789999999831 11112234567899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+ +|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||++++++.+
T Consensus 74 l~~~~~~~~~~~lv~E~~-~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~ 147 (336)
T 3h4j_B 74 LYDVITTPTDIVMVIEYA-GGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNV 147 (336)
T ss_dssp EEEEEECSSEEEEEECCC-CEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCE
T ss_pred EEEEEEeCCEEEEEEECC-CCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCE
Confidence 999999999999999999 78999998764 35899999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||++........ ....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.......
T Consensus 148 kl~DFG~s~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~--------- 215 (336)
T 3h4j_B 148 KIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN--------- 215 (336)
T ss_dssp EECCSSCTBTTTTSBT---TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT---------
T ss_pred EEEEeccceeccCCcc---cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH---------
Confidence 9999999986654332 224579999999999988776 689999999999999999999995432110
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
....+.......+...+..+.+++.+|++.||.+|||+.|++++
T Consensus 216 -------~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 216 -------LFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp -------CBCCCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred -------HHHHHHcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence 01111111112223344568899999999999999999999864
No 90
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=6.4e-40 Score=377.21 Aligned_cols=257 Identities=26% Similarity=0.394 Sum_probs=204.9
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||+||+|..+++..||||++... ....+.|.+|++++++++||||++++
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~hp~iv~~~ 245 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG------------------TMSPEAFLQEAQVMKKLRHEKLVQLY 245 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT------------------SSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccC------------------CCCHHHHHHHHHHHHhCCCCCEeeEE
Confidence 578889999999999999999988888999998421 12346789999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++.+ +..++||||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 246 ~~~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl 321 (452)
T 1fmk_A 246 AVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKV 321 (452)
T ss_dssp EEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEE
Confidence 99876 67899999999999999998654456899999999999999999999 899999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
+|||+++........ ......+|+.|+|||++..+.++.++||||||+++|||++ |+.||... ...+....+.
T Consensus 322 ~DfG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~--~~~~~~~~i~--- 395 (452)
T 1fmk_A 322 ADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM--VNREVLDQVE--- 395 (452)
T ss_dssp CCCCTTC---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHHH---
T ss_pred CCCccceecCCCcee-cccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCC--CHHHHHHHHH---
Confidence 999999876543221 1223456789999999999999999999999999999999 89998432 1112221111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
.. . ..+.+..++..+.+++.+||+.||++|||+.++++.|+++...
T Consensus 396 ~~-~---------~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~ 441 (452)
T 1fmk_A 396 RG-Y---------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 441 (452)
T ss_dssp TT-C---------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred cC-C---------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence 11 0 1112234456788999999999999999999999999987543
No 91
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.3e-39 Score=353.65 Aligned_cols=264 Identities=28% Similarity=0.355 Sum_probs=203.4
Q ss_pred hhccCCcccccccCceeEEEEEe-----CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-----NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV 702 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 702 (947)
.++|++.+.||+|+||+||+|++ .+++.||||++... .....+.+.+|++++++++||
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-----------------~~~~~~~~~~E~~~l~~l~h~ 71 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-----------------TEEHLRDFEREIEILKSLQHD 71 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC-----------------CHHHHHHHHHHHHHHHTCCCT
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC-----------------CHHHHHHHHHHHHHHHhCCCC
Confidence 36889999999999999999984 26889999998421 112346788999999999999
Q ss_pred ccceEEEEEec--CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 703 NVVKLYCSITS--EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 703 niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
||+++++++.. ....++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 72 ~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~ 147 (295)
T 3ugc_A 72 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILV 147 (295)
T ss_dssp TBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred CEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhc-ccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEE
Confidence 99999999865 35589999999999999999874 345899999999999999999999 8999999999999999
Q ss_pred cCCCCeEEeccccceecccCCCC-cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-----
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAG-DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFG----- 854 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~----- 854 (947)
+.++.+||+|||+++........ .......+|..|+|||++.+..++.++||||||+++|||++|..|+.....
T Consensus 148 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~ 227 (295)
T 3ugc_A 148 ENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRM 227 (295)
T ss_dssp EETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHH
T ss_pred cCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhh
Confidence 99999999999999876543221 122234577889999999999999999999999999999999999743210
Q ss_pred -----CcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 855 -----DSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 855 -----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
............. ......+.+...+..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~ 290 (295)
T 3ugc_A 228 IGNDKQGQMIVFHLIELL---------KNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 290 (295)
T ss_dssp HCTTCCTHHHHHHHHHHH---------HTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcCccccchhHHHHHHHH---------hccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 0000000001111 011112223345567899999999999999999999999998864
No 92
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=1.1e-38 Score=354.57 Aligned_cols=259 Identities=20% Similarity=0.269 Sum_probs=205.0
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.+.|++.+.||+|+||+||+|... +++.||||++... ..........+.+.+|+.+++.++||||+
T Consensus 22 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------------~~~~~~~~~~~~~~~E~~~l~~l~hpnIv 89 (351)
T 3c0i_A 22 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVA------------KFTSSPGLSTEDLKREASICHMLKHPHIV 89 (351)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH------------HHHTSSSCCHHHHHHHHHHHHHCCCTTBC
T ss_pred cccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhh------------hccccccchHHHHHHHHHHHHhCCCCCCC
Confidence 4578999999999999999999965 6899999998311 01111123457799999999999999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhc--CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTC--HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
++++++..++..|+||||+++|+|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 90 ~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~ 166 (351)
T 3c0i_A 90 ELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASK 166 (351)
T ss_dssp CEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSS
T ss_pred cEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecC
Confidence 9999999999999999999999999888653 2345899999999999999999999 8999999999999999866
Q ss_pred CC---eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 784 WK---PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 784 ~~---~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
+. +||+|||+++....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||... .....
T Consensus 167 ~~~~~vkl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~~~~ 241 (351)
T 3c0i_A 167 ENSAPVKLGGFGVAIQLGESGL--VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---KERLF 241 (351)
T ss_dssp STTCCEEECCCTTCEECCTTSC--BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---HHHHH
T ss_pred CCCCcEEEecCcceeEecCCCe--eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---HHHHH
Confidence 54 99999999987654332 123457999999999999989999999999999999999999999542 11111
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
. ......... . .......+..+.+++.+|++.||++|||+.|+++
T Consensus 242 ~---~i~~~~~~~----~---~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 242 E---GIIKGKYKM----N---PRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp H---HHHHTCCCC----C---HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred H---HHHcCCCCC----C---ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1 111111110 0 0011123456889999999999999999999985
No 93
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=9.2e-39 Score=349.38 Aligned_cols=248 Identities=24% Similarity=0.335 Sum_probs=204.1
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.. +|+.||||++... ........+.+.+|+.+++.++||||++
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~--------------~~~~~~~~~~~~~E~~~l~~l~hp~Iv~ 70 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKE--------------IVVRLKQVEHTNDERLMLSIVTHPFIIR 70 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHHSCCBTTBCC
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHH--------------HhhhhhHHHHHHHHHHHHhhCCCCCCce
Confidence 367899999999999999999965 7999999998311 1112245567889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+....|+||||+++|+|.+++... ..+++.....++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 71 ~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~ 145 (318)
T 1fot_A 71 MWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHI 145 (318)
T ss_dssp EEEEEECSSEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCE
T ss_pred EeEEEEeCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCE
Confidence 999999999999999999999999999874 35889999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||+++..... ....+||+.|+|||++.+..++.++||||+||++|||++|+.||... +........
T Consensus 146 kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~~~i 215 (318)
T 1fot_A 146 KITDFGFAKYVPDV-----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-----NTMKTYEKI 215 (318)
T ss_dssp EECCCSSCEECSSC-----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHH
T ss_pred EEeecCcceecCCc-----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC-----CHHHHHHHH
Confidence 99999999865432 22457999999999999999999999999999999999999999532 222222222
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP-----SMRVVVQ 915 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~ev~~ 915 (947)
...... ++......+.+++.+|++.||++|| ++.|+++
T Consensus 216 ~~~~~~-----------~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 216 LNAELR-----------FPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHCCCC-----------CCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HhCCCC-----------CCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 211111 1122335678899999999999999 8888874
No 94
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.6e-39 Score=357.74 Aligned_cols=254 Identities=21% Similarity=0.332 Sum_probs=201.5
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|+.. +|+.||||++.... .....+.+.+|++++++++||||+
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~hpniv 67 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN----------------RELAREKVMREVKALAKLEHPGIV 67 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS----------------TTTHHHHHHHHHHHHTSCCCTTBC
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC----------------chhHHHHHHHHHHHHHhCCCCCEe
Confidence 4678999999999999999999976 79999999984211 123446789999999999999999
Q ss_pred eEEEEEecCCc---------------------------------------------------------cEEEEeccCCCC
Q 002250 706 KLYCSITSEDS---------------------------------------------------------NLLVYEYLPNGS 728 (947)
Q Consensus 706 ~l~~~~~~~~~---------------------------------------------------------~~lv~e~~~~gs 728 (947)
++++++.+... .++||||+++|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~ 147 (332)
T 3qd2_B 68 RYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKEN 147 (332)
T ss_dssp CEEEEEEECCSCHHHHHHHC--------------------------------------------CCCEEEEEEECCCSSC
T ss_pred eEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCC
Confidence 99999865432 789999999999
Q ss_pred hHHHhhhcCC-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCC----
Q 002250 729 LWDRLHTCHK-IEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAG---- 803 (947)
Q Consensus 729 L~~~l~~~~~-~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~---- 803 (947)
|.+++..... ...++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~ 224 (332)
T 3qd2_B 148 LKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL 224 (332)
T ss_dssp HHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC-------
T ss_pred HHHHHhcccCccchhhHHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhcccc
Confidence 9999987532 44677788999999999999999 899999999999999999999999999999876554221
Q ss_pred ------cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhccccccccccc
Q 002250 804 ------DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVV 877 (947)
Q Consensus 804 ------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (947)
.......||+.|+|||++.+..++.++||||||+++|||++|..|+. +....... ..
T Consensus 225 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~-------~~~~~~~~----------~~ 287 (332)
T 3qd2_B 225 TPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM-------ERVRIITD----------VR 287 (332)
T ss_dssp -------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH-------HHHHHHHH----------HH
T ss_pred ccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh-------HHHHHHHH----------hh
Confidence 11223469999999999999999999999999999999999887741 11111111 11
Q ss_pred cCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 878 DPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 878 d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
....+.........+.+++.+|++.||++|||+.|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 288 NLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp TTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred ccCCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhhc
Confidence 112233344555678899999999999999999999873
No 95
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=3.1e-39 Score=346.02 Aligned_cols=255 Identities=22% Similarity=0.310 Sum_probs=205.8
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|++.+.||+|+||+||+|+.. ++.||||++..... .....+.+.+|+.++++++||||+++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~---------------~~~~~~~~~~E~~~l~~l~h~~iv~~ 72 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDW---------------STRKSRDFNEECPRLRIFSHPNVLPV 72 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTC---------------CHHHHHHHHHHGGGGCCCSCTTEECE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEeccccc---------------CHHHHHHHHHHHHHHHhcCCCchhhe
Confidence 367889999999999999999987 89999999842211 11234578999999999999999999
Q ss_pred EEEEecC--CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEeccCCCCCeEecCC
Q 002250 708 YCSITSE--DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRP--VIHRDVKSSNILLDLE 783 (947)
Q Consensus 708 ~~~~~~~--~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~--ivH~Dlkp~NIll~~~ 783 (947)
++++..+ ...++||||+++|+|.+++.......+++..+..++.|++.||+||| +.+ |+||||||+||+++.+
T Consensus 73 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~ 149 (271)
T 3kmu_A 73 LGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDED 149 (271)
T ss_dssp EEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTT
T ss_pred EEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCC
Confidence 9999887 77899999999999999999866667999999999999999999999 777 9999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCC---ccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINE---KSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
+.++++|||++..... ....||+.|+|||++.+..++. ++||||||+++|||++|+.||... ...
T Consensus 150 ~~~~l~~~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~-----~~~ 217 (271)
T 3kmu_A 150 MTARISMADVKFSFQS-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL-----SNM 217 (271)
T ss_dssp SCEEEEGGGSCCTTSC-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS-----CHH
T ss_pred cceeEEeccceeeecc-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc-----ChH
Confidence 9999999998754222 1346899999999998765554 799999999999999999998532 111
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
+.......... ....+...+..+.+++.+||+.||++|||+.|+++.|+++..
T Consensus 218 ~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 218 EIGMKVALEGL---------RPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp HHHHHHHHSCC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCC---------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 11111111111 111222344568899999999999999999999999998753
No 96
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=3.5e-39 Score=356.14 Aligned_cols=259 Identities=19% Similarity=0.196 Sum_probs=207.2
Q ss_pred hccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccce
Q 002250 629 DAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVVK 706 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~ 706 (947)
++|++.+.||+|+||+||+|+. .+++.||||++... .....+.+|+.+++++ +||||++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-------------------~~~~~~~~E~~~l~~l~~h~~i~~ 69 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMK-------------------SRAPQLHLEYRFYKQLGSGDGIPQ 69 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETT-------------------CSSCCHHHHHHHHHHHCSCTTSCC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccc-------------------cchHHHHHHHHHHHHhhCCCCCCE
Confidence 6788999999999999999996 47899999988321 2234688999999999 9999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC-
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK- 785 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~- 785 (947)
+++++..++..++||||+ +++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 70 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~ 144 (330)
T 2izr_A 70 VYYFGPCGKYNAMVLELL-GPSLEDLFDLC-DRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNK 144 (330)
T ss_dssp EEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGT
T ss_pred EEEEEecCCccEEEEEeC-CCCHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCC
Confidence 999999999999999999 99999999874 356899999999999999999999 889999999999999998887
Q ss_pred ----eEEeccccceecccCCCCc-----ceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCc
Q 002250 786 ----PRIADFGLAKIVQTGEAGD-----LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDS 856 (947)
Q Consensus 786 ----~kl~DfG~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~ 856 (947)
+||+|||+++......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.... .
T Consensus 145 ~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~--~ 222 (330)
T 2izr_A 145 TQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLK--A 222 (330)
T ss_dssp CTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC--C
T ss_pred CCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccc--c
Confidence 9999999998765433211 1235579999999999999999999999999999999999999996532 2
Q ss_pred ccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 857 KDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
.+..+............ .........+ .+.+++..|++.||.+||++.++.+.|+++
T Consensus 223 ~~~~~~~~~i~~~~~~~------~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~ 279 (330)
T 2izr_A 223 DTLKERYQKIGDTKRAT------PIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDL 279 (330)
T ss_dssp SSHHHHHHHHHHHHHHS------CHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhhccC------CHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 22222221111110000 0000111123 789999999999999999999999999864
No 97
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=7.3e-39 Score=357.16 Aligned_cols=257 Identities=23% Similarity=0.292 Sum_probs=205.8
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.++|++.+.||+|+||.||+|..+ +|+.||||++..... .....+.+.+|+.++++++|||
T Consensus 25 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---------------~~~~~~~~~~E~~il~~l~hpn 89 (362)
T 2bdw_A 25 TKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKL---------------SARDFQKLEREARICRKLQHPN 89 (362)
T ss_dssp CHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---------------CHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccC---------------CHHHHHHHHHHHHHHHhCCCCC
Confidence 345688999999999999999999965 689999999842211 1123467889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++.+++..|+||||+++|+|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+||+++.+
T Consensus 90 Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~ 164 (362)
T 2bdw_A 90 IVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASK 164 (362)
T ss_dssp BCCEEEEEECSSEEEEEECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCS
T ss_pred CCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecC
Confidence 999999999999999999999999999999763 45899999999999999999999 8899999999999999865
Q ss_pred ---CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 784 ---WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 784 ---~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
+.+||+|||++........ .....||+.|+|||++.+..++.++|||||||++|||++|+.||... +..
T Consensus 165 ~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~-----~~~ 236 (362)
T 2bdw_A 165 AKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-----DQH 236 (362)
T ss_dssp STTCCEEECCCTTCBCCTTCCS---CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHH
T ss_pred CCCCCEEEeecCcceEecCCcc---cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC-----CHH
Confidence 4599999999986654322 22457999999999999989999999999999999999999998532 112
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+............. .......+..+.+++.+|++.||++|||+.|++++
T Consensus 237 ~~~~~i~~~~~~~~-------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 237 RLYAQIKAGAYDYP-------SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHHHHHHHTCCCCC-------TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHHHHhCCCCCC-------cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 22111111111100 11112234568889999999999999999998864
No 98
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.1e-38 Score=350.14 Aligned_cols=249 Identities=24% Similarity=0.368 Sum_probs=202.9
Q ss_pred ccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 630 AVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 630 ~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
.|+..+.||+|+||.||+|+.. +|+.||||++... .....+.+.+|+.++++++||||++++
T Consensus 46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~-----------------~~~~~~~~~~E~~~l~~l~h~niv~~~ 108 (321)
T 2c30_A 46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLR-----------------KQQRRELLFNEVVIMRDYQHFNVVEMY 108 (321)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-----------------TCCSHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEecc-----------------chhHHHHHHHHHHHHHhCCCCCcceEE
Confidence 3666778999999999999976 7999999998422 123456788999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++..++..++||||+++++|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 109 ~~~~~~~~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl 182 (321)
T 2c30_A 109 KSYLVGEELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDGRVKL 182 (321)
T ss_dssp EEEEETTEEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEE
T ss_pred EEEEECCEEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCCcEEE
Confidence 999999999999999999999999875 35899999999999999999999 889999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhcc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKMD 868 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~ 868 (947)
+|||++......... .....||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+.......
T Consensus 183 ~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~-----~~~~~~~~~~~ 255 (321)
T 2c30_A 183 SDFGFCAQISKDVPK--RKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD-----SPVQAMKRLRD 255 (321)
T ss_dssp CCCTTCEECCSSSCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHH
T ss_pred eeeeeeeecccCccc--cccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhc
Confidence 999999876543221 23457999999999999989999999999999999999999998532 11111111111
Q ss_pred ccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 869 SRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 869 ~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
... +.+ ......+..+.+++.+|++.||++|||+.|++++
T Consensus 256 ~~~-------~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 256 SPP-------PKL-KNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp SSC-------CCC-TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred CCC-------CCc-CccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 110 011 0111234568889999999999999999999975
No 99
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-38 Score=351.97 Aligned_cols=269 Identities=24% Similarity=0.318 Sum_probs=206.6
Q ss_pred HHHhhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc--ccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV--RHV 702 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~ 702 (947)
..+.++|++.+.||+|+||.||+|+.. ++.||||++.. .....+.+|.+++... +||
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~--------------------~~~~~~~~e~~~~~~~~~~h~ 91 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFT--------------------TEEASWFRETEIYQTVLMRHE 91 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEG--------------------GGHHHHHHHHHHHTSTTCCCT
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEec--------------------cccchhhhHHHHHHHHhhcCC
Confidence 556789999999999999999999987 89999998831 1223445566666554 999
Q ss_pred ccceEEEEEecC----CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCC--------CeEe
Q 002250 703 NVVKLYCSITSE----DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDR--------PVIH 770 (947)
Q Consensus 703 niv~l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~--------~ivH 770 (947)
||+++++++... ...++||||+++|+|.++++. ..+++..+..++.|++.||+||| +. +|+|
T Consensus 92 ~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH 165 (337)
T 3mdy_A 92 NILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAH 165 (337)
T ss_dssp TBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEEC
T ss_pred CeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEe
Confidence 999999999887 678999999999999999976 35899999999999999999999 66 9999
Q ss_pred ccCCCCCeEecCCCCeEEeccccceecccCCCCc--ceecccccccccCccccccCCCCCc------cchHHHHHHHHHH
Q 002250 771 RDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGD--LTHVIAGTHGYIAPEYAYTCKINEK------SDVYSFGVVLMEL 842 (947)
Q Consensus 771 ~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~slGv~l~el 842 (947)
|||||+||+++.++.+||+|||+++......... ......||+.|+|||++.+..++.+ +|||||||++|||
T Consensus 166 ~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el 245 (337)
T 3mdy_A 166 RDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEV 245 (337)
T ss_dssp SCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHH
Confidence 9999999999999999999999997664433211 1124479999999999987766665 9999999999999
Q ss_pred HhC----------CCCCCCCCCCcccHHHHHHhhccccccccccccCCCCc--cCHHHHHHHHHHHHhccCCCCCCCCCH
Q 002250 843 VTG----------KRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISE--ILKEDALKVLRIAIHCTNKLPAFRPSM 910 (947)
Q Consensus 843 ltg----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~cl~~dP~~RPt~ 910 (947)
++| +.||................... ....+..+. ...+++..+.+++.+||+.||++|||+
T Consensus 246 ~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~ 319 (337)
T 3mdy_A 246 ARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCI------KKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTA 319 (337)
T ss_dssp HTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT------SCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCH
T ss_pred HhccCcccccccccccHhhhcCCCCchhhhHHHHhh------hccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCH
Confidence 999 56664433322222222111111 011111111 123677889999999999999999999
Q ss_pred HHHHHHhhccCCCCcc
Q 002250 911 RVVVQMLEEAEPCSVT 926 (947)
Q Consensus 911 ~ev~~~L~~~~~~~~~ 926 (947)
.|++++|+++....+.
T Consensus 320 ~ell~~L~~l~~~~~~ 335 (337)
T 3mdy_A 320 LRVKKTLAKMSESQDI 335 (337)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999987765543
No 100
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=363.71 Aligned_cols=258 Identities=21% Similarity=0.259 Sum_probs=205.1
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.++|++.+.||+|+||+||+|... +|+.||+|++..... .....+.+.+|+.++++++|||
T Consensus 7 ~~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~---------------~~~~~~~~~~E~~il~~l~hpn 71 (444)
T 3soa_A 7 TRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKL---------------SARDHQKLEREARICRLLKHPN 71 (444)
T ss_dssp CHHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSC---------------HHHHHHHHHHHHHHHHHCCBTT
T ss_pred ccccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccC---------------CHHHHHHHHHHHHHHHhCCCcC
Confidence 355688999999999999999999965 789999999842210 1123456889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec--
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD-- 781 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~-- 781 (947)
|+++++++.+++..|+||||+++|+|.+++... ..+++.....++.|++.||+||| +.+|+||||||+||+++
T Consensus 72 Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~ 146 (444)
T 3soa_A 72 IVRLHDSISEEGHHYLIFDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASK 146 (444)
T ss_dssp BCCEEEEEECSSEEEEEECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBS
T ss_pred CCeEEEEEEECCEEEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecc
Confidence 999999999999999999999999999999874 45899999999999999999999 89999999999999998
Q ss_pred -CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 782 -LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 782 -~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
.++.+||+|||+++....... ......||+.|+|||++.+..++.++||||+||++|||++|..||... +..
T Consensus 147 ~~~~~vkL~DFG~a~~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~-----~~~ 219 (444)
T 3soa_A 147 LKGAAVKLADFGLAIEVEGEQQ--AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE-----DQH 219 (444)
T ss_dssp STTCCEEECCCSSCBCCCTTCC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS-----SHH
T ss_pred CCCCcEEEccCceeEEecCCCc--eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc-----cHH
Confidence 468899999999976654322 122457999999999999989999999999999999999999999532 122
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+............ ..+. ....+..+.+++.+|++.||++|||+.|++++
T Consensus 220 ~~~~~i~~~~~~~---~~~~----~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 220 RLYQQIKAGAYDF---PSPE----WDTVTPEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp HHHHHHHHTCCCC---CTTT----TTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHHhCCCCC---Cccc----cccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 2222111111110 0111 11234568889999999999999999999874
No 101
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1.4e-38 Score=344.21 Aligned_cols=259 Identities=27% Similarity=0.431 Sum_probs=203.6
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||+||+|+.. +++.||||++........ .......+.+.+|++++++++||||+++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~----------~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 88 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGE----------TEMIEKFQEFQREVFIMSNLNHPNIVKL 88 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCC----------HHHHCCSHHHHHHHHHHTTCCCTTBCCE
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccc----------hhHHHHHHHHHHHHHHHHhCCCCCchhh
Confidence 67889999999999999999965 789999999853321110 0111233678999999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEeccCCCCCeEecCCCC
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRP--VIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~--ivH~Dlkp~NIll~~~~~ 785 (947)
++++.+.. ++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+ |+||||||+||+++.++.
T Consensus 89 ~~~~~~~~--~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~ 162 (287)
T 4f0f_A 89 YGLMHNPP--RMVMEFVPCGDLYHRLLDK-AHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDE 162 (287)
T ss_dssp EEEETTTT--EEEEECCTTCBHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCT
T ss_pred heeecCCC--eEEEEecCCCCHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCC
Confidence 99997654 7999999999999988763 346899999999999999999999 788 999999999999988776
Q ss_pred -----eEEeccccceecccCCCCcceecccccccccCccccc--cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 786 -----PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY--TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 786 -----~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
+||+|||+++.... ......||+.|+|||++. ...++.++||||+|+++|||++|+.||.........
T Consensus 163 ~~~~~~kl~Dfg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~ 237 (287)
T 4f0f_A 163 NAPVCAKVADFGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIK 237 (287)
T ss_dssp TCSCCEEECCCTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHH
T ss_pred CCceeEEeCCCCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHH
Confidence 99999999974332 223457899999999983 455788999999999999999999999643322221
Q ss_pred HHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 859 IVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
....... ... ....+...+..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 238 ~~~~~~~---~~~---------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 238 FINMIRE---EGL---------RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HHHHHHH---SCC---------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred HHHHHhc---cCC---------CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 1221111 110 0112233456788999999999999999999999999864
No 102
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=2.8e-39 Score=354.38 Aligned_cols=261 Identities=25% Similarity=0.370 Sum_probs=211.1
Q ss_pred hhccCCcccccccCceeEEEEEe------CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-c
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL------NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-R 700 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~ 700 (947)
.++|++.+.||+|+||.||+|+. .+++.||||++.... .....+.+.+|+.+++++ +
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~~ 85 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA----------------HLTEREALMSELKVLSYLGN 85 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----------------CHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcch----------------hHHHHHHHHHHHHHHhhccc
Confidence 36889999999999999999984 246789999984221 112346788999999999 9
Q ss_pred ccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCC----------------ccCCHHHHHHHHHHHHHHHHHHhcCC
Q 002250 701 HVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHK----------------IEMDWVVRYAIAVGAAKGLEYLHHGF 764 (947)
Q Consensus 701 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~----------------~~~~~~~~~~i~~~ia~~l~yLH~~~ 764 (947)
||||+++++++..++..++||||+++|+|.+++..... ..+++..+..++.|++.||+|||
T Consensus 86 h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH--- 162 (313)
T 1t46_A 86 HMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA--- 162 (313)
T ss_dssp CTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999986532 24899999999999999999999
Q ss_pred CCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh
Q 002250 765 DRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT 844 (947)
Q Consensus 765 ~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt 844 (947)
+.+|+||||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++
T Consensus 163 ~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt 242 (313)
T 1t46_A 163 SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFS 242 (313)
T ss_dssp HTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred HCCeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999987665543333334457889999999999999999999999999999999
Q ss_pred -CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 845 -GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 845 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
|+.||..... ............. ...+...+..+.+++.+|++.||.+|||+.|++++|+++.
T Consensus 243 ~g~~p~~~~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 306 (313)
T 1t46_A 243 LGSSPYPGMPV-DSKFYKMIKEGFR-------------MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (313)
T ss_dssp TTCCSSTTCCS-SHHHHHHHHHTCC-------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCcccc-hhHHHHHhccCCC-------------CCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 9999854321 1122222111110 0111223456889999999999999999999999998754
No 103
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=8.4e-40 Score=360.03 Aligned_cols=263 Identities=20% Similarity=0.286 Sum_probs=210.4
Q ss_pred hhccCCcccccccCceeEEEEEeC------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH 701 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 701 (947)
.++|++.+.||+|+||.||+|... +++.||||++.... .......+.+|+.++++++|
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h 87 (322)
T 1p4o_A 24 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAA----------------SMRERIEFLNEASVMKEFNC 87 (322)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTS----------------CHHHHHHHHHHHHHGGGCCC
T ss_pred hhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccccc----------------CHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999854 36789999984211 11233568899999999999
Q ss_pred cccceEEEEEecCCccEEEEeccCCCChHHHhhhcC--------CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccC
Q 002250 702 VNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH--------KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDV 773 (947)
Q Consensus 702 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dl 773 (947)
|||+++++++..++..++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||
T Consensus 88 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~di 164 (322)
T 1p4o_A 88 HHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDL 164 (322)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCC
T ss_pred CCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCC
Confidence 999999999999999999999999999999997632 135689999999999999999999 889999999
Q ss_pred CCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 002250 774 KSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPE 852 (947)
Q Consensus 774 kp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~ 852 (947)
||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++ |+.||...
T Consensus 165 kp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~ 244 (322)
T 1p4o_A 165 AARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL 244 (322)
T ss_dssp SGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred ccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC
Confidence 99999999999999999999986544332222223457889999999998899999999999999999999 88888432
Q ss_pred CCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCC
Q 002250 853 FGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCS 924 (947)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~ 924 (947)
...+........ .....+...+..+.+++.+|++.||++|||+.|+++.|++.....
T Consensus 245 -----~~~~~~~~~~~~----------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~ 301 (322)
T 1p4o_A 245 -----SNEQVLRFVMEG----------GLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 301 (322)
T ss_dssp -----CHHHHHHHHHTT----------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTT
T ss_pred -----CHHHHHHHHHcC----------CcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccC
Confidence 111111111111 111222334556889999999999999999999999999876543
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.6e-38 Score=362.91 Aligned_cols=346 Identities=27% Similarity=0.381 Sum_probs=169.3
Q ss_pred CCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEE
Q 002250 84 CTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWL 163 (947)
Q Consensus 84 l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L 163 (947)
+++|+.|++++|.++. .+.+..+++|++|+|++|.+.+..+ +.++++|++|++++|.+... +. +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccC--hh-hcCCCCCCEE
Confidence 4455555555555543 2234444555555555555443221 44455555555555544432 11 4444455555
Q ss_pred EccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCC
Q 002250 164 YLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLE 243 (947)
Q Consensus 164 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 243 (947)
++++|.+++..+ +.++++|++|+|++|.+.+. + .+.++++|++|+++ |.+.+.. .+.++++|++|++++|.++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 555555443221 55555555555555555432 2 35555555555554 3333221 2555555555555555554
Q ss_pred CCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCccc
Q 002250 244 GDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCK 323 (947)
Q Consensus 244 ~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 323 (947)
+. +.+..+++|++|++++|.+++..| ++.+++|++|++++|++++ + ..+..+++|+.|++++|.+
T Consensus 191 ~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l---------- 255 (466)
T 1o6v_A 191 DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQI---------- 255 (466)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC----------
T ss_pred CC-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCcc----------
Confidence 32 234445555555555555543332 4445555555555555542 1 2233444444444444443
Q ss_pred CCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEE
Q 002250 324 TGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLL 403 (947)
Q Consensus 324 ~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 403 (947)
++..+ +..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 256 --------------------------------------~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 256 --------------------------------------SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp --------------------------------------CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred --------------------------------------ccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 32222 3334444444444444443222 34444444444
Q ss_pred ccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeee
Q 002250 404 LANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSG 483 (947)
Q Consensus 404 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 483 (947)
+++|++++..| +..+++|+.|+|++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 44444443222 4455555555555555554433 45556666666666665543 345566666666666666665
Q ss_pred ecCCCCCccCcCcEEECCCCccCCc
Q 002250 484 KIPDSLGSLPSLNSLNLSNNKFSGE 508 (947)
Q Consensus 484 ~~p~~~~~l~~L~~L~Ls~N~l~~~ 508 (947)
..| +..+++|+.|++++|++++.
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEECC
T ss_pred cch--hhcCCCCCEEeccCCcccCC
Confidence 555 56666666666666666653
No 105
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=358.89 Aligned_cols=251 Identities=25% Similarity=0.322 Sum_probs=199.4
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv 705 (947)
.++|++.+.||+|+||+||+|+.+ +++.||||++... ..........+.+|+.+++.+ +||||+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~--------------~~~~~~~~~~~~~E~~il~~~~~hp~Iv 87 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKD--------------VILQDDDVECTMTEKRILSLARNHPFLT 87 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHH--------------HHHHHTTHHHHHHHHHHHHHTTTCTTBC
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHH--------------HhcchhHHHHHHHHHHHHHhccCCCcee
Confidence 478999999999999999999966 6899999998311 111224456788999999988 799999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..++..|+||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+|||++.++.
T Consensus 88 ~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ 162 (353)
T 3txo_A 88 QLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGH 162 (353)
T ss_dssp CEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSC
T ss_pred eEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCC
Confidence 9999999999999999999999999999874 35899999999999999999999 889999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+|||+|+...... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||... +..+....
T Consensus 163 ikL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~ 235 (353)
T 3txo_A 163 CKLADFGMCKEGICNG--VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE-----NEDDLFEA 235 (353)
T ss_dssp EEECCCTTCBCSCC-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEEccccceeecccCC--ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC-----CHHHHHHH
Confidence 9999999997533222 1233457999999999999888999999999999999999999999532 22222222
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCH------HHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSM------RVVVQ 915 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~------~ev~~ 915 (947)
....... ++......+.+++.+|++.||++||++ .|+++
T Consensus 236 i~~~~~~-----------~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 236 ILNDEVV-----------YPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp HHHCCCC-----------CCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred HHcCCCC-----------CCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 2221111 112233457889999999999999998 66654
No 106
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.4e-39 Score=350.62 Aligned_cols=256 Identities=21% Similarity=0.303 Sum_probs=195.2
Q ss_pred hhccCCcccccccCceeEEEEEeCC----CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNS----GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.++|++.+.||+|+||.||+|.... +..||||++... ......+.+.+|+.++++++|||
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~----------------~~~~~~~~~~~e~~~l~~l~h~~ 77 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC----------------TSDSVREKFLQEALTMRQFDHPH 77 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT----------------TSHHHHHHHHHHHHHHHTCCCTT
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc----------------CCHHHHHHHHHHHHHHHhCCCCc
Confidence 3688999999999999999999642 457999987321 11123467889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++. ++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 78 iv~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~ 152 (281)
T 1mp8_A 78 IVKLIGVIT-ENPVWIIMELCTLGELRSFLQVR-KYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSN 152 (281)
T ss_dssp BCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEET
T ss_pred cceEEEEEc-cCccEEEEecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCC
Confidence 999999985 46789999999999999999863 346899999999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
+.+||+|||+++......... .....+|+.|+|||++....++.++||||||+++|||++ |..||.... ..+....
T Consensus 153 ~~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~--~~~~~~~ 229 (281)
T 1mp8_A 153 DCVKLGDFGLSRYMEDSTYYK-ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGR 229 (281)
T ss_dssp TEEEECC--------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHH
T ss_pred CCEEECccccccccCcccccc-cccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC--HHHHHHH
Confidence 999999999998765433221 223356789999999998899999999999999999997 899985431 2222222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
+... .....+...+..+.+++.+|++.||++|||+.|+++.|+++
T Consensus 230 i~~~-------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 274 (281)
T 1mp8_A 230 IENG-------------ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 274 (281)
T ss_dssp HHTT-------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHcC-------------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence 2111 11112233456788999999999999999999999999875
No 107
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=6.6e-39 Score=362.45 Aligned_cols=276 Identities=18% Similarity=0.234 Sum_probs=207.2
Q ss_pred hhccCCccccccc--CceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 628 IDAVKPENLIGKG--GSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 628 ~~~~~~~~~iG~G--~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
.++|++.+.||+| +||+||+|+.. +++.||||++.... ........+.+|+.++++++||||
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~ni 88 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEA---------------CSNEMVTFLQGELHVSKLFNHPNI 88 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGG---------------SCHHHHHHHHHHHHHHHHCCCTTB
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccc---------------cChHHHHHHHHHHHHHHhCCCCCC
Confidence 3689999999999 99999999976 79999999984211 111234678889999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
|++++++..++..++||||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 89 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~ 165 (389)
T 3gni_B 89 VPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDG 165 (389)
T ss_dssp CCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC
T ss_pred CcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCC
Confidence 999999999999999999999999999998765567999999999999999999999 89999999999999999999
Q ss_pred CeEEeccccceecccCCC-----CcceecccccccccCcccccc--CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 785 KPRIADFGLAKIVQTGEA-----GDLTHVIAGTHGYIAPEYAYT--CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
.+||+|||.+........ ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... .
T Consensus 166 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~ 244 (389)
T 3gni_B 166 KVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPAT-Q 244 (389)
T ss_dssp CEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCST-T
T ss_pred CEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH-H
Confidence 999999999865432211 111223478999999999987 57899999999999999999999999643211 1
Q ss_pred cHHHHHHhhccc----cc---------------------------cccccccCCCCccCHHHHHHHHHHHHhccCCCCCC
Q 002250 858 DIVNWVYSKMDS----RD---------------------------SMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAF 906 (947)
Q Consensus 858 ~~~~~~~~~~~~----~~---------------------------~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~ 906 (947)
............ .. ......+....+........+.+++.+||+.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~ 324 (389)
T 3gni_B 245 MLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDA 324 (389)
T ss_dssp HHHHC--------------------------------------------------------CCHHHHHHHHHHTCSCTTT
T ss_pred HHHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCccc
Confidence 111100000000 00 00000000001122334567899999999999999
Q ss_pred CCCHHHHHHH--hhccCC
Q 002250 907 RPSMRVVVQM--LEEAEP 922 (947)
Q Consensus 907 RPt~~ev~~~--L~~~~~ 922 (947)
|||+.|++++ ++++..
T Consensus 325 Rpta~ell~hp~f~~~~~ 342 (389)
T 3gni_B 325 RPSASTLLNHSFFKQIKR 342 (389)
T ss_dssp SCCHHHHTTSGGGGGC--
T ss_pred CCCHHHHhcCHHHHHHhh
Confidence 9999999965 555543
No 108
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=4.5e-39 Score=360.67 Aligned_cols=252 Identities=22% Similarity=0.302 Sum_probs=198.7
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv 705 (947)
.++|++.+.||+|+||+||+|+.+ +++.||||++.... .........+.+|..+++++ +||||+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~--------------~~~~~~~~~~~~E~~il~~~~~hp~Iv 116 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKEL--------------VNDDEDIDWVQTEKHVFEQASNHPFLV 116 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGG--------------TC----CCHHHHHHHHHHHHTTCTTBC
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhh--------------ccCHHHHHHHHHHHHHHHhcCCCCCcC
Confidence 467999999999999999999976 68899999984221 11123345678899999887 899999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..++..|+||||+++|+|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++.
T Consensus 117 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ 191 (396)
T 4dc2_A 117 GLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGH 191 (396)
T ss_dssp CEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSC
T ss_pred eeEEEEEECCEEEEEEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCC
Confidence 9999999999999999999999999999874 35899999999999999999999 899999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC---cccHHHH
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGD---SKDIVNW 862 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~---~~~~~~~ 862 (947)
+||+|||+|+...... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.
T Consensus 192 ikL~DFGla~~~~~~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~ 269 (396)
T 4dc2_A 192 IKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDY 269 (396)
T ss_dssp EEECCCTTCBCCCCTT--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHH
T ss_pred EEEeecceeeecccCC--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHH
Confidence 9999999998533222 1233567999999999999999999999999999999999999999643211 1111111
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCH
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSM 910 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 910 (947)
....+.... ..++......+.+++.+|++.||++||++
T Consensus 270 ~~~~i~~~~----------~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 270 LFQVILEKQ----------IRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp HHHHHHHCC----------CCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred HHHHHhccc----------cCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 111111111 11222334567889999999999999996
No 109
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=9.2e-39 Score=347.60 Aligned_cols=261 Identities=17% Similarity=0.192 Sum_probs=209.6
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv 705 (947)
.++|++.+.||+|+||.||+|+. .+++.||||++... .....+.+|+.+++++ +|+|++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-------------------~~~~~~~~e~~~~~~l~~~~~i~ 69 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR-------------------SDAPQLRDEYRTYKLLAGCTGIP 69 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC-------------------TTSCCHHHHHHHHHHTTTCTTCC
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC-------------------CccHHHHHHHHHHHHHhcCCCCC
Confidence 46799999999999999999995 57999999988321 2334688999999999 799999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..+...++||||+ +++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 70 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~ 144 (298)
T 1csn_A 70 NVYYFGQEGLHNVLVIDLL-GPSLEDLLDLC-GRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNS 144 (298)
T ss_dssp CEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSS
T ss_pred eEEeecCCCceeEEEEEec-CCCHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCC
Confidence 9999999999999999999 99999999874 345899999999999999999999 899999999999999987776
Q ss_pred -----eEEeccccceecccCCCC-----cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 002250 786 -----PRIADFGLAKIVQTGEAG-----DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGD 855 (947)
Q Consensus 786 -----~kl~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~ 855 (947)
+||+|||+++........ .......||+.|+|||++.+..++.++||||||+++|||++|+.||......
T Consensus 145 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~ 224 (298)
T 1csn_A 145 KNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA 224 (298)
T ss_dssp TTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC
T ss_pred CCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhcc
Confidence 999999999876554322 1223457999999999999989999999999999999999999999653211
Q ss_pred -cccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 856 -SKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 856 -~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
............. ...........+..+.+++.+||+.||++|||+.++++.|+++.
T Consensus 225 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~ 282 (298)
T 1csn_A 225 TNKQKYERIGEKKQ---------STPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVL 282 (298)
T ss_dssp CHHHHHHHHHHHHH---------HSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhcc---------CccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHH
Confidence 1111111111000 00111122234567889999999999999999999999999764
No 110
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=5.4e-39 Score=344.26 Aligned_cols=254 Identities=30% Similarity=0.397 Sum_probs=194.7
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||.||+|... ++.||||++..... .......+.+.+|+++++.++||||++++
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~-------------~~~~~~~~~~~~e~~~l~~l~h~~i~~~~ 72 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPD-------------EDISQTIENVRQEAKLFAMLKHPNIIALR 72 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC-----------------------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCc-------------ccHHHHHHHHHHHHHHHHhcCCCCEeeEE
Confidence 57888999999999999999986 89999999842211 11123456789999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCC---eEeccCCCCCeEecC---
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRP---VIHRDVKSSNILLDL--- 782 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~---ivH~Dlkp~NIll~~--- 782 (947)
+++..++..++||||+++++|.+++.. ..+++..+..++.|++.||+||| +.+ |+||||||+||+++.
T Consensus 73 ~~~~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~ 146 (271)
T 3dtc_A 73 GVCLKEPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVE 146 (271)
T ss_dssp EEECCC--CEEEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCS
T ss_pred EEEecCCceEEEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccc
Confidence 999999999999999999999999864 46899999999999999999999 666 999999999999986
Q ss_pred -----CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 783 -----EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 783 -----~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
++.+||+|||.++....... ....||+.|+|||++.+..++.++||||||+++|||++|+.||...
T Consensus 147 ~~~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~----- 217 (271)
T 3dtc_A 147 NGDLSNKILKITDFGLAREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI----- 217 (271)
T ss_dssp SSCCSSCCEEECCCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS-----
T ss_pred cccccCcceEEccCCcccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----
Confidence 67899999999976543322 2346899999999999988999999999999999999999998532
Q ss_pred cHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 858 DIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
+............. ....+...+..+.+++.+|++.||++|||+.|++++|+++
T Consensus 218 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 218 DGLAVAYGVAMNKL---------ALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp CHHHHHHHHHTSCC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CHHHHHHhhhcCCC---------CCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 11111111111110 0112233445788999999999999999999999999864
No 111
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=349.90 Aligned_cols=253 Identities=29% Similarity=0.443 Sum_probs=197.6
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||+||+|+.. ++.||||++.. ....+.+.+|++++++++||||++++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~-------------------~~~~~~~~~E~~~l~~l~hp~iv~~~ 67 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIES-------------------ESERKAFIVELRQLSRVNHPNIVKLY 67 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSS-------------------TTHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecC-------------------hhHHHHHHHHHHHHhcCCCCCcCeEE
Confidence 57888999999999999999986 78999998831 12346789999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCC-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC-e
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHK-IEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK-P 786 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~-~ 786 (947)
+++.+ ..++||||+++|+|.+++..... ..+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +
T Consensus 68 ~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~ 145 (307)
T 2eva_A 68 GACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVL 145 (307)
T ss_dssp EBCTT--TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEE
T ss_pred EEEcC--CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEE
Confidence 98874 58999999999999999986543 24788999999999999999999332289999999999999998887 7
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||++....... ....||+.|+|||++.+..++.++||||||+++|||++|+.||....... .......
T Consensus 146 kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~~~~~ 217 (307)
T 2eva_A 146 KICDFGTACDIQTHM-----TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPA---FRIMWAV 217 (307)
T ss_dssp EECCCCC-----------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSH---HHHHHHH
T ss_pred EEccccccccccccc-----ccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccH---HHHHHHH
Confidence 999999997543321 23468999999999999899999999999999999999999985432211 1111111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
.... ........+..+.+++.+||+.||++|||+.|++++|+.+.
T Consensus 218 ~~~~----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 262 (307)
T 2eva_A 218 HNGT----------RPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLM 262 (307)
T ss_dssp HTTC----------CCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHG
T ss_pred hcCC----------CCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence 1111 11122233456889999999999999999999999998765
No 112
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.1e-38 Score=360.75 Aligned_cols=355 Identities=17% Similarity=0.177 Sum_probs=295.5
Q ss_pred CceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeec
Q 002250 36 GLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNL 115 (947)
Q Consensus 36 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L 115 (947)
.+++.++++++++.+. | .++.+++|+.|+|++|.+.+. | ++.+++|++|+|++|+|++. .++.+++|++|+|
T Consensus 42 ~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ecCCCCcCCEEEC
Confidence 5789999999998875 4 699999999999999999875 3 89999999999999999986 3899999999999
Q ss_pred CCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccc
Q 002250 116 NSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELF 195 (947)
Q Consensus 116 ~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 195 (947)
++|++++ ++ +..+++|++|++++|+++..+ +..+++|++|++++|...+.+ .+..+++|++|+|++|+++
T Consensus 114 ~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 114 DTNKLTK-LD---VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCcCCe-ec---CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 9999986 33 889999999999999998753 778999999999999665555 5889999999999999998
Q ss_pred cccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccC
Q 002250 196 GEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGE 275 (947)
Q Consensus 196 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~ 275 (947)
+ +| +..+++|++|++++|++++. .+..+++|++|++++|++++.+ +..+++|+.|++++|++++.. ++.
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 6 44 88999999999999999975 4889999999999999999865 888999999999999999754 456
Q ss_pred CCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEE
Q 002250 276 FKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFR 355 (947)
Q Consensus 276 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 355 (947)
+++|+.|++++|+ |+.|++++|.+.+.+| +..+..|+.|++.+|...+.+|.. ..+|+.|+
T Consensus 253 l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~ 313 (457)
T 3bz5_A 253 LSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELD 313 (457)
T ss_dssp CTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCC
T ss_pred CCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcceEec
Confidence 7788888887764 4567888888777666 355677888888888877777743 33444444
Q ss_pred cccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccC
Q 002250 356 VNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSG 435 (947)
Q Consensus 356 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 435 (947)
+++ +++|+.|++++|++++. .++.+++|+.|++++|++++ ++.|..|++++|.+.|
T Consensus 314 l~~-------------~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 314 LSQ-------------NPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp CTT-------------CTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred hhh-------------cccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence 444 36888889999998874 27888889999999998885 2456667888999886
Q ss_pred CCCcccccccccchhhccccccCCCCCccccc
Q 002250 436 QIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGS 467 (947)
Q Consensus 436 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 467 (947)
. +.+..|+.++|++|+++|.+|..+..
T Consensus 370 ~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 370 E-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp E-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred c-----ceeeecCccccccCcEEEEcChhHhc
Confidence 5 46778889999999999998876543
No 113
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=2.1e-39 Score=358.61 Aligned_cols=261 Identities=23% Similarity=0.337 Sum_probs=209.0
Q ss_pred hhccCCcccccccCceeEEEEEeC--------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN--------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV 699 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 699 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++.... .......+.+|+++++++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l 97 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA----------------TEKDLSDLVSEMEMMKMI 97 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC----------------CHHHHHHHHHHHHHHHHH
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC----------------cHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999863 46789999984211 112346788999999999
Q ss_pred -cccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCC--------------ccCCHHHHHHHHHHHHHHHHHHhcCC
Q 002250 700 -RHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHK--------------IEMDWVVRYAIAVGAAKGLEYLHHGF 764 (947)
Q Consensus 700 -~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~~~~~~i~~~ia~~l~yLH~~~ 764 (947)
+||||+++++++..++..++||||+++|+|.+++..... ..+++..+..++.|++.||+|||
T Consensus 98 ~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH--- 174 (334)
T 2pvf_A 98 GKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA--- 174 (334)
T ss_dssp CCCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---
T ss_pred hcCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---
Confidence 899999999999999999999999999999999986432 34899999999999999999999
Q ss_pred CCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh
Q 002250 765 DRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT 844 (947)
Q Consensus 765 ~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt 844 (947)
+.+|+||||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++
T Consensus 175 ~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt 254 (334)
T 2pvf_A 175 SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 254 (334)
T ss_dssp HTTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHT
T ss_pred hCCeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999987655433222334457889999999998889999999999999999999
Q ss_pred -CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 845 -GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 845 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
|+.||... ....+...+.. .. ....+...+..+.+++.+||+.||++|||+.|+++.|+++..
T Consensus 255 ~g~~p~~~~--~~~~~~~~~~~---~~----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~ 318 (334)
T 2pvf_A 255 LGGSPYPGI--PVEELFKLLKE---GH----------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT 318 (334)
T ss_dssp TSCCSSTTC--CHHHHHHHHHH---TC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCcCcC--CHHHHHHHHhc---CC----------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 99998532 11122221111 11 011122334568899999999999999999999999998643
No 114
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=7.5e-39 Score=347.11 Aligned_cols=266 Identities=21% Similarity=0.294 Sum_probs=202.5
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||+||+|+.. +++.||||++.... ........+.+|+.++++++||||+++
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~iv~~ 66 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDD---------------DDEGVPSSALREICLLKELKHKNIVRL 66 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSC---------------SSTTHHHHHHHHHHHHTTCCCTTBCCE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccC---------------CcCCcchHHHHHHHHHhcCCCCCEeeE
Confidence 57889999999999999999975 68999999984321 111233667899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++..++..++||||+++ ++.+.+... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 67 ~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~k 141 (292)
T 3o0g_A 67 HDVLHSDKKLTLVFEFCDQ-DLKKYFDSC-NGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELK 141 (292)
T ss_dssp EEEEEETTEEEEEEECCSE-EHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEE
T ss_pred EeEEEeCCEEEEEEecCCC-CHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEE
Confidence 9999999999999999975 666666542 346899999999999999999999 88999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCC-CCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK-INEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
|+|||+++....... ......||+.|+|||++.+.. ++.++||||+||++|||++|..||.........+.......
T Consensus 142 l~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~ 219 (292)
T 3o0g_A 142 LANFGLARAFGIPVR--CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLL 219 (292)
T ss_dssp ECCCTTCEECCSCCS--CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHH
T ss_pred EeecccceecCCccc--cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHh
Confidence 999999987643322 223457899999999998766 79999999999999999999998754332222222221111
Q ss_pred cccccc-cccc-------------ccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 867 MDSRDS-MLTV-------------VDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 867 ~~~~~~-~~~~-------------~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
...... +... ...............+.+++.+|++.||++|||+.|++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 220 GTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp CCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred CCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 110000 0000 0001112223345668899999999999999999999874
No 115
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=2.9e-39 Score=349.77 Aligned_cols=263 Identities=28% Similarity=0.428 Sum_probs=196.8
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|++.+.||+|+||+||+|+.. ..||||++.... ......+.+.+|+.++++++||||+++
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~iv~~ 85 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTA---------------PTPQQLQAFKNEVGVLRKTRHVNILLF 85 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSS---------------CCHHHHHHHHHHHHHHTTCCCTTBCCE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccC---------------CCHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 367999999999999999999865 359999984221 111234678999999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++ .....++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 86 ~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~k 160 (289)
T 3og7_A 86 MGYS-TAPQLAIVTQWCEGSSLYHHLHAS-ETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVK 160 (289)
T ss_dssp EEEE-CSSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEE
T ss_pred Eeec-cCCccEEEEEecCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEE
Confidence 9965 456689999999999999999763 356899999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY---TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVY 864 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~ 864 (947)
|+|||+++...............||+.|+|||++. ...++.++||||||+++|||++|+.||.... ....+.+...
T Consensus 161 l~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-~~~~~~~~~~ 239 (289)
T 3og7_A 161 IGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNIN-NRDQIIEMVG 239 (289)
T ss_dssp ECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCC-CHHHHHHHHH
T ss_pred EccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccc-hHHHHHHHhc
Confidence 99999998655433322333457899999999986 5668889999999999999999999985432 1122222221
Q ss_pred hhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 865 SKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 865 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
... ..+.........+..+.+++.+|++.||++|||+.|+++.|+++..
T Consensus 240 ~~~---------~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 240 RGS---------LSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp HTS---------CCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred ccc---------cCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 111 1122222333455678999999999999999999999999998754
No 116
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=354.97 Aligned_cols=253 Identities=24% Similarity=0.297 Sum_probs=203.5
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++... ..........+.+|+.+++.++||||++
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~--------------~~~~~~~~~~~~~E~~il~~l~hp~Iv~ 79 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQ--------------KCVERNEVRNVFKELQIMQGLEHPFLVN 79 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHHTCCCTTBCC
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehh--------------hcccHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 478999999999999999999966 6889999998311 1112344577889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..|+||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 80 l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~v 154 (384)
T 4fr4_A 80 LWYSFQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHV 154 (384)
T ss_dssp EEEEEECSSEEEEEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCE
T ss_pred EEEEEEeCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCE
Confidence 999999999999999999999999999863 45899999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCcccccc---CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT---CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
||+|||+|+....... ....+||+.|+|||++.. ..++.++|||||||++|||++|+.||...... ......
T Consensus 155 kL~DFG~a~~~~~~~~---~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~--~~~~~~ 229 (384)
T 4fr4_A 155 HITDFNIAAMLPRETQ---ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST--SSKEIV 229 (384)
T ss_dssp EECCCTTCEECCTTCC---BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS--CHHHHH
T ss_pred EEeccceeeeccCCCc---eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc--cHHHHH
Confidence 9999999987654322 234579999999999864 45889999999999999999999999643221 122211
Q ss_pred HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCC-HHHHHH
Q 002250 864 YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPS-MRVVVQ 915 (947)
Q Consensus 864 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-~~ev~~ 915 (947)
....... ...+......+.+++.+|++.||++||+ +.++.+
T Consensus 230 ~~~~~~~-----------~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 230 HTFETTV-----------VTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp HHHHHCC-----------CCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred HHHhhcc-----------cCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 1111111 1122233456889999999999999998 666553
No 117
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.3e-38 Score=352.82 Aligned_cols=248 Identities=22% Similarity=0.265 Sum_probs=204.5
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +|+.||||++... ..........+.+|+.+++.++||||++
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~--------------~~~~~~~~~~~~~E~~~l~~l~hp~iv~ 105 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQ--------------KVVKLKQIEHTLNEKRILQAVNFPFLVK 105 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHTTCCCTTBCC
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhH--------------HhccHHHHHHHHHHHHHHHhCCCCCCCe
Confidence 468999999999999999999976 6999999998311 1112244567889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+++..|+||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 106 ~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~ 180 (350)
T 1rdq_E 106 LEFSFKDNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYI 180 (350)
T ss_dssp EEEEEECSSEEEEEEECCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCE
T ss_pred EEEEEEcCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCE
Confidence 999999999999999999999999999874 34889999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||+++...... ...+||+.|+|||++.+..++.++|||||||++|||++|+.||... +..+.....
T Consensus 181 kL~DFg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i 250 (350)
T 1rdq_E 181 QVTDFGFAKRVKGRT-----WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD-----QPIQIYEKI 250 (350)
T ss_dssp EECCCTTCEECSSCB-----CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHH
T ss_pred EEcccccceeccCCc-----ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC-----CHHHHHHHH
Confidence 999999998764332 2457999999999999999999999999999999999999999532 222222222
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPS-----MRVVVQ 915 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~ev~~ 915 (947)
...... ++......+.+++.+|++.||++||+ +.|+.+
T Consensus 251 ~~~~~~-----------~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 251 VSGKVR-----------FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHCCCC-----------CCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HcCCCC-----------CCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 211111 12223456889999999999999998 788775
No 118
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=2.9e-39 Score=347.94 Aligned_cols=255 Identities=27% Similarity=0.400 Sum_probs=207.2
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||.||+|...+++.||||++... ....+.+.+|++++++++||||++++
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~h~~i~~~~ 74 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG------------------SMSPDAFLAEANLMKQLQHQRLVRLY 74 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT------------------SSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC------------------cccHHHHHHHHHHHHhCCCcCcceEE
Confidence 678999999999999999999988889999998421 12346789999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++.. +..++||||+++++|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||++++++.+||
T Consensus 75 ~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl 150 (279)
T 1qpc_A 75 AVVTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKI 150 (279)
T ss_dssp EEECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEE
T ss_pred EEEcC-CCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEE
Confidence 99874 56899999999999999998654456899999999999999999999 899999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
+|||.+......... ......++..|+|||++.+..++.++||||||+++|||++ |+.||... ......... .
T Consensus 151 ~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--~~~~~~~~~---~ 224 (279)
T 1qpc_A 151 ADFGLARLIEDNEYT-AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM--TNPEVIQNL---E 224 (279)
T ss_dssp CCCTTCEECSSSCEE-CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHHH---H
T ss_pred CCCcccccccCcccc-cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc--CHHHHHHHH---h
Confidence 999999876543221 1123356789999999998889999999999999999999 89998432 111111111 1
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
.... ...+...+..+.+++.+|++.||++|||+.++++.|+++.
T Consensus 225 ~~~~----------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 268 (279)
T 1qpc_A 225 RGYR----------MVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF 268 (279)
T ss_dssp TTCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cccC----------CCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHH
Confidence 1100 1112233457889999999999999999999999999754
No 119
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.2e-39 Score=346.48 Aligned_cols=256 Identities=23% Similarity=0.305 Sum_probs=208.0
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||.||+|...+++.||||++... ....+.+.+|++++++++||||++++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~------------------~~~~~~~~~e~~~l~~l~h~~i~~~~ 69 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG------------------AMSEEDFIEEAEVMMKLSHPKLVQLY 69 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT------------------TBCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEcccc------------------CCCHHHHHHHHHHHHhCCCCCEeeEE
Confidence 578889999999999999999988899999998421 12346789999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++..++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 70 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl 145 (267)
T 3t9t_A 70 GVCLEQAPICLVTEFMEHGCLSDYLRTQ-RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKV 145 (267)
T ss_dssp EEECSSSSCEEEECCCTTCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEE
T ss_pred EEEccCCCeEEEEeCCCCCcHHHHHhhC-cccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEE
Confidence 9999999999999999999999999864 346899999999999999999999 899999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
+|||.+........ .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||... ...+......
T Consensus 146 ~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~i~ 219 (267)
T 3t9t_A 146 SDFGMTRFVLDDQY-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-----SNSEVVEDIS 219 (267)
T ss_dssp CCTTGGGGBCCHHH-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC-----CHHHHHHHHh
Confidence 99999976533211 11123356788999999998889999999999999999999 89998532 1122211111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
.... ...+...+..+.+++.+|++.||++|||+.+++++|+++..
T Consensus 220 ~~~~----------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 220 TGFR----------LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp TTCC----------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCc----------CCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 1110 01111234568889999999999999999999999998653
No 120
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=7.1e-39 Score=346.45 Aligned_cols=265 Identities=26% Similarity=0.339 Sum_probs=199.9
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||+||+|+..+++.||||++.... ........+.+|++++++++||||++++
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~iv~~~ 66 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEK---------------EDEGIPSTTIREISILKELKHSNIVKLY 66 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSS---------------GGGCCCHHHHHHHHGGGGCCCTTBCCEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccc---------------cccccchhHHHHHHHHHhcCCCCEeeee
Confidence 5788899999999999999999889999999984221 1123346788999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++..++..++||||+++ +|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 67 ~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl 141 (288)
T 1ob3_A 67 DVIHTKKRLVLVFEHLDQ-DLKKLLDVC-EGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKI 141 (288)
T ss_dssp EEEECSSCEEEEEECCSE-EHHHHHHTS-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEE
T ss_pred eEEccCCeEEEEEEecCC-CHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEE
Confidence 999999999999999975 999988764 345889999999999999999999 889999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
+|||+++....... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.... ....+........
T Consensus 142 ~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-~~~~~~~~~~~~~ 218 (288)
T 1ob3_A 142 ADFGLARAFGIPVR--KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS-EADQLMRIFRILG 218 (288)
T ss_dssp CCTTHHHHHCC-----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS-HHHHHHHHHHHHC
T ss_pred eECccccccCcccc--ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHHC
Confidence 99999976543221 12234689999999998764 58999999999999999999999985431 1111111111100
Q ss_pred ccc-cccc-----ccccCCC--------CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 868 DSR-DSML-----TVVDPNI--------SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 868 ~~~-~~~~-----~~~d~~~--------~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
... ..+. ...++.. ..........+.+++.+|++.||++|||+.|++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 219 TPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp CCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 000 0000 0011111 11222345668899999999999999999999863
No 121
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=2e-38 Score=357.55 Aligned_cols=256 Identities=21% Similarity=0.288 Sum_probs=203.4
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.+ +++.||||++... ..........+.+|+.+++.++||||++
T Consensus 68 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~--------------~~~~~~~~~~~~~E~~il~~l~hp~Iv~ 133 (410)
T 3v8s_A 68 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKF--------------EMIKRSDSAFFWEERDIMAFANSPWVVQ 133 (410)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH--------------HHHHTCCCSTHHHHHHHHHHCCCTTBCC
T ss_pred ccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehh--------------hhhhhHHHHHHHHHHHHHHhCCCCCCCe
Confidence 468999999999999999999976 6889999998311 1112234456889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+++..|+||||+++|+|.++++. ..+++.....++.||+.||+||| +.+|+||||||+|||++.++.+
T Consensus 134 l~~~~~~~~~~~lV~E~~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~i 207 (410)
T 3v8s_A 134 LFYAFQDDRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHL 207 (410)
T ss_dssp EEEEEECSSEEEEEECCCTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCE
T ss_pred EEEEEEECCEEEEEEeCCCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCE
Confidence 99999999999999999999999999976 35788999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCC----CCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK----INEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 862 (947)
||+|||+|+........ .....+||+.|+|||++.... ++.++|||||||++|||++|+.||... +....
T Consensus 208 kL~DFG~a~~~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-----~~~~~ 281 (410)
T 3v8s_A 208 KLADFGTCMKMNKEGMV-RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD-----SLVGT 281 (410)
T ss_dssp EECCCTTCEECCTTSEE-ECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHH
T ss_pred EEeccceeEeeccCCcc-cccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC-----ChhhH
Confidence 99999999876543221 122457999999999997655 788999999999999999999999532 22222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCC--CCCHHHHHHH
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAF--RPSMRVVVQM 916 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPt~~ev~~~ 916 (947)
........... ..+. .......+.+++.+|+..+|.+ ||++.||+++
T Consensus 282 ~~~i~~~~~~~------~~p~-~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 282 YSKIMNHKNSL------TFPD-DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp HHHHHTHHHHC------CCCT-TCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred HHHHHhccccc------cCCC-cccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 22221111100 0000 0112345788899999999998 9999999975
No 122
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=2.4e-39 Score=350.32 Aligned_cols=257 Identities=27% Similarity=0.369 Sum_probs=212.6
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|... +++.||||++... ....+.+.+|++++++++||||++
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~------------------~~~~~~~~~E~~~l~~l~h~~i~~ 73 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED------------------TMEVEEFLKEAAVMKEIKHPNLVQ 73 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC------------------STHHHHHHHHHHHHHHCCCTTBCC
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC------------------HHHHHHHHHHHHHHHhCCCCCEee
Confidence 467889999999999999999976 5889999998421 133467889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++++|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 74 ~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~ 150 (288)
T 3kfa_A 74 LLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLV 150 (288)
T ss_dssp EEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCE
T ss_pred EEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCE
Confidence 9999999999999999999999999998877777999999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||.+........ .......+|+.|+|||++.+..++.++||||||+++|||++ |..||... ......+....
T Consensus 151 ~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~--~~~~~~~~~~~ 227 (288)
T 3kfa_A 151 KVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLEK 227 (288)
T ss_dssp EECCCCGGGTSCSSSS-EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHHT
T ss_pred EEccCccceeccCCcc-ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHhc
Confidence 9999999986654322 22223457889999999998899999999999999999999 88898532 22222222211
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
.. ....+...+..+.+++.+|++.||++|||+.|+++.|+++.
T Consensus 228 ~~-------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~ 270 (288)
T 3kfa_A 228 DY-------------RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 270 (288)
T ss_dssp TC-------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cC-------------CCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence 11 01112233457889999999999999999999999998754
No 123
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=6.2e-39 Score=356.24 Aligned_cols=253 Identities=25% Similarity=0.342 Sum_probs=190.4
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
.+.+.|++.+.||+|+||+||+|+.. +++.||||++... ...+.+.+|++++++++||||
T Consensus 50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~-------------------~~~~~~~~E~~~l~~l~h~ni 110 (349)
T 2w4o_A 50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKT-------------------VDKKIVRTEIGVLLRLSHPNI 110 (349)
T ss_dssp CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------------------------CHHHHHCCCTTB
T ss_pred cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc-------------------hhHHHHHHHHHHHHhCCCCCC
Confidence 34578999999999999999999976 5889999998421 123567889999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC--
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL-- 782 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~-- 782 (947)
+++++++..++..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 111 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~ 185 (349)
T 2w4o_A 111 IKLKEIFETPTEISLVLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPA 185 (349)
T ss_dssp CCEEEEEECSSEEEEEECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSS
T ss_pred cceeeeEecCCeEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCC
Confidence 99999999999999999999999999999863 45899999999999999999999 889999999999999975
Q ss_pred -CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 783 -EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 783 -~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
++.+||+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....... ...
T Consensus 186 ~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~- 260 (349)
T 2w4o_A 186 PDAPLKIADFGLSKIVEHQVL---MKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ-FMF- 260 (349)
T ss_dssp TTCCEEECCCC-------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH-HHH-
T ss_pred CCCCEEEccCccccccCcccc---cccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH-HHH-
Confidence 88999999999986543321 234578999999999999899999999999999999999999985432211 111
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
......... . ..+...+.+..+.+++.+|++.||++|||+.|++++
T Consensus 261 --~~i~~~~~~---~----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 261 --RRILNCEYY---F----ISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp --HHHHTTCCC---C----CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred --HHHHhCCCc---c----CCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 111111111 0 111122344568899999999999999999999974
No 124
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1e-38 Score=357.99 Aligned_cols=256 Identities=21% Similarity=0.306 Sum_probs=206.4
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.+.|++.+.||+|+||+||+|... +|+.||+|++.... ......+.+|+.++++++|||
T Consensus 47 ~~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-----------------~~~~~~~~~E~~il~~l~hpn 109 (387)
T 1kob_A 47 GSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY-----------------PLDKYTVKNEISIMNQLHHPK 109 (387)
T ss_dssp SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-----------------HHHHHHHHHHHHHHTTCCSTT
T ss_pred CccccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc-----------------hhhHHHHHHHHHHHHhCCCcC
Confidence 345678999999999999999999965 68999999983210 122356889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC-
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL- 782 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~- 782 (947)
|+++++++.++...++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 110 Iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~ 185 (387)
T 1kob_A 110 LINLHDAFEDKYEMVLILEFLSGGELFDRIAAE-DYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETK 185 (387)
T ss_dssp BCCEEEEEECSSEEEEEEECCCCCBHHHHTTCT-TCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESST
T ss_pred CCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecC
Confidence 999999999999999999999999999999763 346899999999999999999999 899999999999999974
Q ss_pred -CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 783 -EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 783 -~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
++.+||+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||... +..+
T Consensus 186 ~~~~vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~-----~~~~ 257 (387)
T 1kob_A 186 KASSVKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE-----DDLE 257 (387)
T ss_dssp TCCCEEECCCTTCEECCTTSC---EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-----SHHH
T ss_pred CCCceEEEecccceecCCCcc---eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC-----CHHH
Confidence 57799999999987654332 23457999999999999989999999999999999999999999532 1122
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
........... .+ .......+..+.+++.+|++.||++|||+.|++++
T Consensus 258 ~~~~i~~~~~~----~~---~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 258 TLQNVKRCDWE----FD---EDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp HHHHHHHCCCC----CC---SSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHhCCCC----CC---ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 22111111111 01 11112334568899999999999999999999975
No 125
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=4.3e-39 Score=360.35 Aligned_cols=277 Identities=17% Similarity=0.187 Sum_probs=206.1
Q ss_pred hhccCCcccccccCceeEEEEEeCC------CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNS------GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH 701 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 701 (947)
.++|++.+.||+|+||+||+|.... ++.||||++..... ....+...........+..|+..++.++|
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~------~~~~e~~~~~~~~~~~~~~e~~~~~~l~h 107 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNG------PLFTELKFYQRAAKPEQIQKWIRTRKLKY 107 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCH------HHHHHHHHHHHHCCHHHHHHHHHHTTCSC
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccch------hHHHHHHHHHhhhhhHHHHHHHHHhhccC
Confidence 4589999999999999999999764 47899999843210 00111111112233455667788888899
Q ss_pred cccceEEEEEecC----CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCC
Q 002250 702 VNVVKLYCSITSE----DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSN 777 (947)
Q Consensus 702 ~niv~l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~N 777 (947)
|||+++++++... ...++||||+ +++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+|
T Consensus 108 ~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~-~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~N 182 (364)
T 3op5_A 108 LGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN-AKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASN 182 (364)
T ss_dssp CCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGG
T ss_pred CCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHH
Confidence 9999999998775 3479999999 99999999873 356899999999999999999999 8899999999999
Q ss_pred eEec--CCCCeEEeccccceecccCCCCc-----ceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCC
Q 002250 778 ILLD--LEWKPRIADFGLAKIVQTGEAGD-----LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIV 850 (947)
Q Consensus 778 Ill~--~~~~~kl~DfG~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~ 850 (947)
||++ .++.+||+|||+++......... ......||+.|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus 183 ill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~ 262 (364)
T 3op5_A 183 LLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWE 262 (364)
T ss_dssp EEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG
T ss_pred EEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence 9999 88999999999998765432211 1123459999999999999899999999999999999999999996
Q ss_pred CCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 851 PEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
...... .......... ...+....++.+. ....+..+.+++..||+.||++||++.++++.|+++
T Consensus 263 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~ 327 (364)
T 3op5_A 263 DNLKDP-KYVRDSKIRY--RENIASLMDKCFP--AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG 327 (364)
T ss_dssp GGTTCH-HHHHHHHHHH--HHCHHHHHHHHSC--TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred ccccCH-HHHHHHHHHh--hhhHHHHHHHhcc--cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 433221 1221111111 1111111111110 012245788999999999999999999999998864
No 126
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=8e-40 Score=356.71 Aligned_cols=262 Identities=26% Similarity=0.369 Sum_probs=206.0
Q ss_pred hccCCcccccccCceeEEEEEe-----CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVL-----NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
+.|++.+.||+|+||.||+|++ .+++.||||++.... .......+.+|++++++++|||
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~~ 84 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES----------------GGNHIADLKKEIEILRNLYHEN 84 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC---------------------CCHHHHHHHHHHHHTCCCTT
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc----------------cchhHHHHHHHHHHHHhCCCCC
Confidence 5688899999999999999983 368899999984221 1234577899999999999999
Q ss_pred cceEEEEEecC--CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 704 VVKLYCSITSE--DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 704 iv~l~~~~~~~--~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
|+++++++..+ ...++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 85 i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~ 160 (302)
T 4e5w_A 85 IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKN-KNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVE 160 (302)
T ss_dssp BCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEE
T ss_pred eeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEc
Confidence 99999999876 6679999999999999999653 345899999999999999999999 89999999999999999
Q ss_pred CCCCeEEeccccceecccCCCC-cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC-------
Q 002250 782 LEWKPRIADFGLAKIVQTGEAG-DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEF------- 853 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~------- 853 (947)
.++.+||+|||++......... .......||..|+|||++.+..++.++||||+|+++|||++|+.|+....
T Consensus 161 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~ 240 (302)
T 4e5w_A 161 SEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMI 240 (302)
T ss_dssp ETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHH
T ss_pred CCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhcc
Confidence 9999999999999876544321 12223467888999999999889999999999999999999999863211
Q ss_pred ---CCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 854 ---GDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 854 ---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
.......... ... ........+...+..+.+++.+||+.||.+|||+.|+++.|+++
T Consensus 241 ~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 241 GPTHGQMTVTRLV-NTL---------KEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp CSCCGGGHHHHHH-HHH---------HTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCcccccCHHHHH-HHH---------hccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 0000111111 111 01111222334456788999999999999999999999999875
No 127
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-39 Score=356.30 Aligned_cols=280 Identities=24% Similarity=0.372 Sum_probs=204.1
Q ss_pred hccCCcccccccCceeEEEEEeCC-----CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNS-----GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~-----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
++|+..+.||+|+||+||+|.... +..||||++.... .......+.+|+.++++++|||
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~~ 107 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY----------------TEKQRVDFLGEAGIMGQFSHHN 107 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC----------------CHHHHHHHHHHHHHHHTCCCTT
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC----------------CHHHHHHHHHHHHHHHhCCCCC
Confidence 567778999999999999998652 2359999984211 1123456889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++...+..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 108 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~ 183 (333)
T 1mqb_A 108 IIRLEGVISKYKPMMIITEYMENGALDKFLREK-DGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSN 183 (333)
T ss_dssp BCCEEEEECSSSSEEEEEECCTTEEHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTT
T ss_pred CCcEEEEEecCCCcEEEEeCCCCCcHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCC
Confidence 999999999999999999999999999999863 346899999999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCc-ceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGD-LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~ 861 (947)
+.+||+|||+++......... ......+|+.|+|||++....++.++||||||+++|||++ |+.||... ....+..
T Consensus 184 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~--~~~~~~~ 261 (333)
T 1mqb_A 184 LVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL--SNHEVMK 261 (333)
T ss_dssp CCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CHHHHHH
T ss_pred CcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC--CHHHHHH
Confidence 999999999998765432211 1222346789999999998899999999999999999999 99998532 1111221
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCCcceeeecccccCCCCcC
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCSVTNIVVKKVGESSPSFS 941 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 941 (947)
.+ .... ....+...+..+.+++.+||+.||++||++.+++++|+++...+... ...+...|..+
T Consensus 262 ~~---~~~~----------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~~---~~~~~~~p~~~ 325 (333)
T 1mqb_A 262 AI---NDGF----------RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSL---KTLADFDPRVS 325 (333)
T ss_dssp HH---HTTC----------CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGGG---GSBCCC-----
T ss_pred HH---HCCC----------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchhh---hhhcCCCccch
Confidence 11 1110 01112234456889999999999999999999999999876544221 22344445555
Q ss_pred CCCCC
Q 002250 942 RHYNS 946 (947)
Q Consensus 942 ~~~~~ 946 (947)
.+++|
T Consensus 326 ~~~p~ 330 (333)
T 1mqb_A 326 IRLPS 330 (333)
T ss_dssp -----
T ss_pred hhCCC
Confidence 55544
No 128
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=6.6e-39 Score=354.02 Aligned_cols=250 Identities=26% Similarity=0.389 Sum_probs=202.1
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv 705 (947)
.++|++.+.||+|+||.||+|+.+ +|+.||||++... ..........+..|..+++.+ +||||+
T Consensus 16 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~--------------~~~~~~~~~~~~~E~~il~~~~~hp~iv 81 (345)
T 1xjd_A 16 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKD--------------VVLMDDDVECTMVEKRVLSLAWEHPFLT 81 (345)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHHHHTTCTTBC
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhH--------------HhhhhhhHHHHHHHHHHHHhcCCCCCCC
Confidence 478999999999999999999976 6899999998311 011123456778899999987 999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++.+++..|+||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 82 ~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~ 156 (345)
T 1xjd_A 82 HMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGH 156 (345)
T ss_dssp CEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSC
T ss_pred cEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCC
Confidence 9999999999999999999999999999864 35889999999999999999999 889999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+|||+++....... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||... +..+....
T Consensus 157 vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~ 229 (345)
T 1xjd_A 157 IKIADFGMCKENMLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ-----DEEELFHS 229 (345)
T ss_dssp EEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEEeEChhhhhcccCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC-----CHHHHHHH
Confidence 99999999975433221 233467999999999999989999999999999999999999999532 12222211
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHH-HHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMR-VVV 914 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~-ev~ 914 (947)
...... .+ +......+.+++.+|++.||++||++. ++.
T Consensus 230 i~~~~~--------~~---p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 230 IRMDNP--------FY---PRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHCCC--------CC---CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHhCCC--------CC---CcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 111111 11 122345678899999999999999997 554
No 129
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=1.6e-38 Score=348.55 Aligned_cols=265 Identities=21% Similarity=0.326 Sum_probs=189.2
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|... +|+.||||++.... .......+.+|++++++++||||++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~E~~~l~~l~hp~iv~ 67 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS----------------EEGTPSTAIREISLMKELKHENIVR 67 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCS----------------TTCSCHHHHHHHHHHTTCCBTTBCC
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc----------------ccccHHHHHHHHHHHHhcCCCCcce
Confidence 367899999999999999999965 68999999984221 1233467889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcC----CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCH----KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL 782 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~----~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 782 (947)
+++++..++..++||||++ |+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 68 ~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~ 143 (317)
T 2pmi_A 68 LYDVIHTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINK 143 (317)
T ss_dssp EEEEECCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECT
T ss_pred EEEEEEECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcC
Confidence 9999999999999999997 69999987532 245889999999999999999999 889999999999999999
Q ss_pred CCCeEEeccccceecccCCCCcceecccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 783 EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
++.+||+|||+++....... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||.... ..+...
T Consensus 144 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~ 219 (317)
T 2pmi_A 144 RGQLKLGDFGLARAFGIPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTN--DEEQLK 219 (317)
T ss_dssp TCCEEECCCSSCEETTSCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHH
T ss_pred CCCEEECcCccceecCCCcc--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHH
Confidence 99999999999987643321 12234689999999998764 58999999999999999999999995431 111112
Q ss_pred HHHhhccc-ccccc-c-----cccCCC----C---------ccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 862 WVYSKMDS-RDSML-T-----VVDPNI----S---------EILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 862 ~~~~~~~~-~~~~~-~-----~~d~~~----~---------~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.+...... ..... . ...+.+ . .........+.+++.+|++.||++|||+.|++++
T Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 220 LIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp HHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 11111110 00000 0 000000 0 0011234568899999999999999999999864
No 130
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=346.64 Aligned_cols=266 Identities=24% Similarity=0.288 Sum_probs=196.1
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccc---------hhhhhhcccCChhhHHHHHHHHh
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRS---------STAILSKRSSRSSEYDAEVATLS 697 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~E~~~l~ 697 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++............. ............+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 468999999999999999999965 68999999996543211100000 00000011223467899999999
Q ss_pred hccccccceEEEEEec--CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCC
Q 002250 698 AVRHVNVVKLYCSITS--EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKS 775 (947)
Q Consensus 698 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp 775 (947)
+++||||+++++++.. ++..++||||+++++|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp 165 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKP 165 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCH
Confidence 9999999999999987 5678999999999999887543 46899999999999999999999 88999999999
Q ss_pred CCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCC---CCCccchHHHHHHHHHHHhCCCCCCCC
Q 002250 776 SNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK---INEKSDVYSFGVVLMELVTGKRPIVPE 852 (947)
Q Consensus 776 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slGv~l~elltg~~p~~~~ 852 (947)
+||+++.++.+||+|||+++....... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||...
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence 999999999999999999987654322 223457999999999997665 367899999999999999999998532
Q ss_pred CCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 853 FGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
....+.......... .+... ..+..+.+++.+|++.||++|||+.|+++
T Consensus 244 -----~~~~~~~~~~~~~~~-----~~~~~----~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 244 -----RIMCLHSKIKSQALE-----FPDQP----DIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp -----SHHHHHHHHHHCCCC-----CCSSS----CCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred -----cHHHHHHHHhcccCC-----CCCcc----ccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 222221111111110 01111 23346889999999999999999999875
No 131
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=2.6e-39 Score=357.94 Aligned_cols=261 Identities=23% Similarity=0.336 Sum_probs=208.6
Q ss_pred hhccCCcccccccCceeEEEEEeCC-C-----cEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-c
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNS-G-----KELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-R 700 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~-~-----~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~ 700 (947)
.++|++.+.||+|+||.||+|.... + ..||||++.... .....+.+.+|+.+++++ +
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~~ 108 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA----------------HADEKEALMSELKIMSHLGQ 108 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC----------------CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc----------------ChHHHHHHHHHHHHHHhhcC
Confidence 4678899999999999999999652 3 479999984211 112346788999999999 8
Q ss_pred ccccceEEEEEecCCccEEEEeccCCCChHHHhhhcC------------CccCCHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 002250 701 HVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH------------KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPV 768 (947)
Q Consensus 701 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~------------~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~i 768 (947)
||||+++++++..++..++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|
T Consensus 109 h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i 185 (333)
T 2i1m_A 109 HENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNC 185 (333)
T ss_dssp CTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred CCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCc
Confidence 9999999999999999999999999999999997542 235799999999999999999999 8899
Q ss_pred EeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCC
Q 002250 769 IHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKR 847 (947)
Q Consensus 769 vH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~ 847 (947)
+||||||+||+++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||+| |..
T Consensus 186 vH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~ 265 (333)
T 2i1m_A 186 IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN 265 (333)
T ss_dssp ECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred ccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999987655443333334457889999999999899999999999999999999 888
Q ss_pred CCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 848 PIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 848 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
||..... ............. ...+...+..+.+++.+||+.||.+|||+.|+++.|+++.
T Consensus 266 p~~~~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 325 (333)
T 2i1m_A 266 PYPGILV-NSKFYKLVKDGYQ-------------MAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQA 325 (333)
T ss_dssp SSTTCCS-SHHHHHHHHHTCC-------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCcccch-hHHHHHHHhcCCC-------------CCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence 9854321 1222222211110 0111122456889999999999999999999999998754
No 132
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=356.78 Aligned_cols=265 Identities=24% Similarity=0.311 Sum_probs=203.4
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcE----EEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKE----LAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~----vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
++|++.+.||+|+||+||+|+.. +++. ||+|.+... ........+.+|+.++++++|||
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~----------------~~~~~~~~~~~E~~~l~~l~hp~ 78 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA----------------TSPKANKEILDEAYVMASVDNPH 78 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCC----------------SSCCCHHHHHHHHHHHTTCCBTT
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccc----------------cCHHHHHHHHHHHHHHHhCCCCC
Confidence 67889999999999999999954 4554 467766311 12245577899999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..+. .++|+||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 79 iv~~~~~~~~~~-~~~v~~~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~ 153 (327)
T 3lzb_A 79 VCRLLGICLTST-VQLITQLMPFGCLLDYVREH-KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTP 153 (327)
T ss_dssp BCCCCEEEESSS-EEEEECCCSSCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEET
T ss_pred eeEEEEEEecCC-ceEEEEecCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCC
Confidence 999999998764 78999999999999999874 346899999999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
+.+||+|||+++...............+|+.|+|||++.+..++.++||||||+++|||++ |+.||... ....+...
T Consensus 154 ~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--~~~~~~~~ 231 (327)
T 3lzb_A 154 QHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--PASEISSI 231 (327)
T ss_dssp TEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CGGGHHHH
T ss_pred CCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHH
Confidence 9999999999987654443333334457889999999999999999999999999999999 99998543 22223222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCCcceee
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCSVTNIV 929 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~~~~~~ 929 (947)
+.... ....+...+..+.+++.+||+.||.+|||+.|+++.|+++...+...++
T Consensus 232 ~~~~~-------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~~ 285 (327)
T 3lzb_A 232 LEKGE-------------RLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARDPQRYLV 285 (327)
T ss_dssp HHTTC-------------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSHHHHBC
T ss_pred HHcCC-------------CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCcCceEE
Confidence 21111 0111222345688999999999999999999999999998766544443
No 133
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=346.77 Aligned_cols=269 Identities=24% Similarity=0.269 Sum_probs=202.8
Q ss_pred HhhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc---cc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR---HV 702 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~ 702 (947)
+.++|++.+.||+|+||+||+|+. .+++.||||++....... ........+.+|+.++++++ ||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~------------~~~~~~~~~~~e~~~l~~l~~~~h~ 74 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGG------------GGGGLPISTVREVALLRRLEAFEHP 74 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCT------------TSSCCCHHHHHHHHHHHHHHHHCCT
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccc------------cccccchhHHHHHHHHHHHhhcCCC
Confidence 457899999999999999999995 478999999985322110 11122356778888888775 99
Q ss_pred ccceEEEEEecCC-----ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCC
Q 002250 703 NVVKLYCSITSED-----SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSN 777 (947)
Q Consensus 703 niv~l~~~~~~~~-----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~N 777 (947)
||+++++++.... ..++||||++ ++|.+++.......+++..+..++.|++.||+||| +.+|+||||||+|
T Consensus 75 niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~N 150 (308)
T 3g33_A 75 NVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPEN 150 (308)
T ss_dssp TBCCEEEEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTT
T ss_pred CeEEeeeeeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHH
Confidence 9999999998765 3689999996 69999998866666999999999999999999999 8899999999999
Q ss_pred eEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 778 ILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 778 Ill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
|+++.++.+||+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.... ..
T Consensus 151 il~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~ 225 (308)
T 3g33_A 151 ILVTSGGTVKLADFGLARIYSYQMA---LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS--EA 225 (308)
T ss_dssp EEECTTSCEEECSCSCTTTSTTCCC---SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS--HH
T ss_pred EEEcCCCCEEEeeCccccccCCCcc---cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC--HH
Confidence 9999999999999999976543322 234578999999999999999999999999999999999999995431 11
Q ss_pred cHHHHHHhhccc--cccccc-------ccc----CCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 858 DIVNWVYSKMDS--RDSMLT-------VVD----PNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 858 ~~~~~~~~~~~~--~~~~~~-------~~d----~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+........... ...+.. .+. ........+....+.+++.+|++.||++|||+.|++++
T Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 226 DQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp HHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 111111111100 000000 000 00011122344578899999999999999999999864
No 134
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2e-38 Score=340.72 Aligned_cols=256 Identities=25% Similarity=0.343 Sum_probs=206.8
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|... +++.||||++... ......+.+.+|+.+++.++||||+
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----------------~~~~~~~~~~~e~~~l~~l~h~~i~ 68 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMK----------------RAVDCPENIKKEICINKMLNHENVV 68 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGG----------------GCTTHHHHHHHHHHHHHTCCCTTBC
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeec----------------cchhhhHHHHHHHHHHHhcCCCCce
Confidence 4678999999999999999999976 7899999998311 1123346788999999999999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 69 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~ 143 (276)
T 2yex_A 69 KFYGHRREGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDN 143 (276)
T ss_dssp CEEEEEEETTEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCC
T ss_pred eeeeEEEcCCEEEEEEEecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCC
Confidence 9999999999999999999999999999753 45899999999999999999999 899999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVY 864 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~ 864 (947)
+||+|||.+................||+.|+|||++.+..+ +.++||||||+++|||++|+.||............+..
T Consensus 144 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~ 223 (276)
T 2yex_A 144 LKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKE 223 (276)
T ss_dssp EEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHT
T ss_pred EEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhh
Confidence 99999999987654332222334578999999999987665 67899999999999999999999654333322222221
Q ss_pred hhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 865 SKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 865 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
. ... ..........+.+++.+|++.||++|||+.|++++
T Consensus 224 ~----~~~---------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 224 K----KTY---------LNPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp T----CTT---------STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred c----ccc---------cCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 1 000 00111234567889999999999999999999863
No 135
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-37 Score=361.03 Aligned_cols=348 Identities=25% Similarity=0.357 Sum_probs=240.4
Q ss_pred cccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCC
Q 002250 106 MLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQ 185 (947)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 185 (947)
.+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+... +. +..+++|++|++++|.+++..+ ++++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~--~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCcc-Cc--chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 35566666666666653 33 355666666666666666543 22 5556666666666666654332 55566666
Q ss_pred EEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccC
Q 002250 186 NLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQF 265 (947)
Q Consensus 186 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i 265 (947)
+|+|++|++++..+ +.++++|++|++++|.+++. + .+..+++|++|+++ |.+.+.. .
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~-~----------------- 172 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK-P----------------- 172 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG-G-----------------
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch-h-----------------
Confidence 66666666553322 55555566666666655532 1 24555555555553 2222211 1
Q ss_pred cccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccc
Q 002250 266 SGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETY 345 (947)
Q Consensus 266 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~ 345 (947)
+..+++|++|++++|++++. ..+..+++|++|++++|.+++.. | +
T Consensus 173 -------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~------------------------~--~ 217 (466)
T 1o6v_A 173 -------LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDIT------------------------P--L 217 (466)
T ss_dssp -------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG------------------------G--G
T ss_pred -------hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccc------------------------c--c
Confidence 44455555555555555421 22445555555555555554211 1 3
Q ss_pred cCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceE
Q 002250 346 ANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVS 425 (947)
Q Consensus 346 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 425 (947)
+.+++|+.|++++|.+++. +.+..+++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.
T Consensus 218 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 4456677777777777643 356778999999999999998665 8899999999999999996544 889999999
Q ss_pred EEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCcc
Q 002250 426 IQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKF 505 (947)
Q Consensus 426 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 505 (947)
|++++|++++..+ ++.+++|+.|+|++|++++..| ++.+++|+.|++++|++++. ..+.++++|+.|++++|++
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 9999999996544 8899999999999999998776 78999999999999999965 4689999999999999999
Q ss_pred CCccCCcccccccceeeCCCCcCCCCC
Q 002250 506 SGEIPISLTYPKLSLLDLSNNQLAGPI 532 (947)
Q Consensus 506 ~~~~p~~~~~~~L~~L~ls~N~l~~~~ 532 (947)
++.+| ...+++|+.|++++|++++.+
T Consensus 366 ~~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 366 SDLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred Cccch-hhcCCCCCEEeccCCcccCCc
Confidence 99888 556799999999999999853
No 136
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=358.82 Aligned_cols=273 Identities=19% Similarity=0.259 Sum_probs=213.3
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||+||+|+.. +|+.||||++.. .......+.+.+|++++++++||||+++
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~----------------~~~~~~~~~~~~E~~~l~~l~hpnIv~~ 72 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNN----------------ISFLRPVDVQMREFEVLKKLNHKNIVKL 72 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECG----------------GGGGSCHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecc----------------ccccchHHHHHHHHHHHHhcCCCCCCeE
Confidence 67899999999999999999976 589999999831 1112345677899999999999999999
Q ss_pred EEEEecCC--ccEEEEeccCCCChHHHhhhcC-CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe----
Q 002250 708 YCSITSED--SNLLVYEYLPNGSLWDRLHTCH-KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL---- 780 (947)
Q Consensus 708 ~~~~~~~~--~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll---- 780 (947)
++++...+ ..++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 73 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~ 149 (396)
T 4eut_A 73 FAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGE 149 (396)
T ss_dssp EEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECT
T ss_pred EEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecC
Confidence 99998765 6699999999999999998643 234899999999999999999999 8999999999999999
Q ss_pred cCCCCeEEeccccceecccCCCCcceecccccccccCcccccc--------CCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT--------CKINEKSDVYSFGVVLMELVTGKRPIVPE 852 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~slGv~l~elltg~~p~~~~ 852 (947)
+.++.+||+|||+++....... .....||+.|+|||++.. ..++.++|||||||++|||++|+.||.+.
T Consensus 150 ~~~~~~kL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~ 226 (396)
T 4eut_A 150 DGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPF 226 (396)
T ss_dssp TSCEEEEECCGGGCEECCCGGG---SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECT
T ss_pred CCceeEEEecCCCceEccCCCc---cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 7778899999999987654332 223569999999999865 45778999999999999999999999654
Q ss_pred CCCcccHHHHHHhhcccccc--cc---cc------cc---CCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhh
Q 002250 853 FGDSKDIVNWVYSKMDSRDS--ML---TV------VD---PNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLE 918 (947)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~--~~---~~------~d---~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~ 918 (947)
...... .+.+......... +. .. .. +............+.+++.+|++.||++||++.|+++.++
T Consensus 227 ~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~ 305 (396)
T 4eut_A 227 EGPRRN-KEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS 305 (396)
T ss_dssp TCTTTC-HHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred Ccccch-HHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHH
Confidence 322221 1222222211110 00 00 00 1112345677888999999999999999999999999998
Q ss_pred ccCCCC
Q 002250 919 EAEPCS 924 (947)
Q Consensus 919 ~~~~~~ 924 (947)
++....
T Consensus 306 ~il~~~ 311 (396)
T 4eut_A 306 DILHRM 311 (396)
T ss_dssp HHHTCE
T ss_pred HHhhce
Confidence 865543
No 137
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=7.2e-38 Score=344.19 Aligned_cols=261 Identities=23% Similarity=0.292 Sum_probs=209.1
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
+.+.+.|++.+.||+|+||.||+|+.. +|+.||||++....... .......+.+.+|+.++++++|||
T Consensus 8 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------~~~~~~~~~~~~E~~~l~~l~h~~ 76 (321)
T 2a2a_A 8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRA-----------SRRGVSREEIEREVSILRQVLHHN 76 (321)
T ss_dssp SCHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSS-----------CSSSBCHHHHHHHHHHHHHCCCTT
T ss_pred hhhhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccc-----------cccchhHHHHHHHHHHHHhCCCCC
Confidence 456688999999999999999999966 68999999985432211 111224567899999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 77 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~ 151 (321)
T 2a2a_A 77 VITLHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDK 151 (321)
T ss_dssp BCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCT
T ss_pred cceEEEEEecCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecC
Confidence 999999999999999999999999999999863 45889999999999999999999 8899999999999999988
Q ss_pred C----CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 784 W----KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 784 ~----~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
+ .+||+|||++........ .....||+.|+|||++.+..++.++||||||+++|||++|+.||... ..
T Consensus 152 ~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~ 223 (321)
T 2a2a_A 152 NIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TK 223 (321)
T ss_dssp TSSSCCEEECCCTTCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SH
T ss_pred CCCcCCEEEccCccceecCcccc---ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC-----CH
Confidence 7 799999999987654332 22346899999999999889999999999999999999999998532 11
Q ss_pred HHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 860 VNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.+............ + .......+..+.+++.+|++.||++|||+.|++++
T Consensus 224 ~~~~~~i~~~~~~~----~---~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 224 QETLANITSVSYDF----D---EEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp HHHHHHHHTTCCCC----C---HHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHHHhccccc----C---hhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 22221111111110 0 11111234568899999999999999999999974
No 138
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.6e-38 Score=359.15 Aligned_cols=254 Identities=22% Similarity=0.302 Sum_probs=194.7
Q ss_pred HHHhhccCCc-ccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhh-ccc
Q 002250 625 KEIIDAVKPE-NLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSA-VRH 701 (947)
Q Consensus 625 ~~~~~~~~~~-~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~-l~h 701 (947)
..+.++|.+. +.||+|+||+||+|... +++.||||++. ....+.+|+.++.+ .+|
T Consensus 57 ~~~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~----------------------~~~~~~~E~~~~~~~~~h 114 (400)
T 1nxk_A 57 NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ----------------------DCPKARREVELHWRASQC 114 (400)
T ss_dssp SCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE----------------------CSHHHHHHHHHHHHHTTS
T ss_pred CcccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeC----------------------cchhHHHHHHHHHHhcCC
Confidence 3445677776 78999999999999965 68999999982 23457789998754 489
Q ss_pred cccceEEEEEec----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCC
Q 002250 702 VNVVKLYCSITS----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSN 777 (947)
Q Consensus 702 ~niv~l~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~N 777 (947)
|||+++++++.. ....|+||||+++|+|.+++.......+++..+..++.||+.||+||| +.+|+||||||+|
T Consensus 115 p~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~N 191 (400)
T 1nxk_A 115 PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPEN 191 (400)
T ss_dssp TTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGG
T ss_pred CCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcce
Confidence 999999999875 566899999999999999998765567999999999999999999999 8999999999999
Q ss_pred eEecC---CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC
Q 002250 778 ILLDL---EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFG 854 (947)
Q Consensus 778 Ill~~---~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~ 854 (947)
|+++. ++.+||+|||+++....... ....+||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 192 ill~~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~ 268 (400)
T 1nxk_A 192 LLYTSKRPNAILKLTDFGFAKETTSHNS---LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG 268 (400)
T ss_dssp EEESSSSTTCCEEECCCTTCEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTT
T ss_pred EEEecCCCCccEEEEecccccccCCCCc---cccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcc
Confidence 99997 78999999999986543321 2345789999999999999999999999999999999999999965432
Q ss_pred Cc--ccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 855 DS--KDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 855 ~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.. ......+.. .... ...+ ........+.+++.+||+.||++|||+.|++++
T Consensus 269 ~~~~~~~~~~i~~---~~~~---~~~~----~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 269 LAISPGMKTRIRM---GQYE---FPNP----EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp CSSCCSHHHHHHH---TCCC---CCTT----TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ccccHHHHHHHHc---Cccc---CCCc----ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 11 112211111 1000 0001 112234568899999999999999999999975
No 139
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=8.4e-39 Score=356.84 Aligned_cols=255 Identities=22% Similarity=0.233 Sum_probs=194.5
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHH-Hhhccccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVAT-LSAVRHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv 705 (947)
.++|++.+.||+|+||.||+|+.+ +++.||||++..... ........+.+|..+ ++.++||||+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~--------------~~~~~~~~~~~e~~~ll~~~~hp~Iv 102 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAI--------------LKKKEEKHIMSERNVLLKNVKHPFLV 102 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGB--------------C-------------CCBCCCCCTTBC
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHh--------------hhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 467999999999999999999976 688999999842211 111233455667776 5678999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..++..|+||||+++|+|.+++... ..+++.....++.||+.||+||| +.+|+||||||+||+++.++.
T Consensus 103 ~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ 177 (373)
T 2r5t_A 103 GLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGH 177 (373)
T ss_dssp CEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSC
T ss_pred CEEEEEEeCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCC
Confidence 9999999999999999999999999999864 35788888999999999999999 899999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+|||+++....... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||... +..+....
T Consensus 178 ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~ 250 (373)
T 2r5t_A 178 IVLTDFGLCKENIEHNS--TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-----NTAEMYDN 250 (373)
T ss_dssp EEECCCCBCGGGBCCCC--CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----BHHHHHHH
T ss_pred EEEeeCccccccccCCC--ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-----CHHHHHHH
Confidence 99999999975433221 233567999999999999999999999999999999999999999532 22222222
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhc
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEE 919 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~ 919 (947)
....... ++......+.+++.+|++.||.+||++.+.++.+.+
T Consensus 251 i~~~~~~-----------~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~ 293 (373)
T 2r5t_A 251 ILNKPLQ-----------LKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKS 293 (373)
T ss_dssp HHHSCCC-----------CCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHT
T ss_pred HHhcccC-----------CCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhC
Confidence 2211111 111233467889999999999999998655544444
No 140
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=1.8e-38 Score=351.22 Aligned_cols=252 Identities=22% Similarity=0.303 Sum_probs=198.8
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv 705 (947)
.++|++.+.||+|+||.||+|+.+ +++.||||++..... ........+.+|+.+++++ +||||+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~--------------~~~~~~~~~~~E~~~l~~~~~hp~iv 73 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELV--------------NDDEDIDWVQTEKHVFEQASNHPFLV 73 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGS--------------CSHHHHHHHHHHHHHHHHTTTCTTBC
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHh--------------cchHHHHHHHHHHHHHHhcCCCCccC
Confidence 367889999999999999999976 689999999842110 1112345678899999988 899999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..++..|+||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 74 ~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~ 148 (345)
T 3a8x_A 74 GLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGH 148 (345)
T ss_dssp CEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSC
T ss_pred eEEEEEEeCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCC
Confidence 9999999999999999999999999999864 35899999999999999999999 899999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCc---ccHHHH
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDS---KDIVNW 862 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~---~~~~~~ 862 (947)
+||+|||+++...... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ......
T Consensus 149 ~kL~DFG~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~ 226 (345)
T 3a8x_A 149 IKLTDYGMCKEGLRPG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDY 226 (345)
T ss_dssp EEECCGGGCBCSCCTT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHH
T ss_pred EEEEeccccccccCCC--CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHH
Confidence 9999999998543222 12334579999999999999899999999999999999999999996422110 011111
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCH
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSM 910 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 910 (947)
....+.... ..++......+.+++.+|++.||++||++
T Consensus 227 ~~~~i~~~~----------~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 227 LFQVILEKQ----------IRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp HHHHHHHCC----------CCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred HHHHHHcCC----------CCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 111111111 11122334568889999999999999996
No 141
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=342.22 Aligned_cols=263 Identities=24% Similarity=0.307 Sum_probs=204.5
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|... +++.||||++... ...........+.+|++++++++||||+
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~-------------~~~~~~~~~~~~~~E~~~l~~l~h~~i~ 69 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKK-------------KLRRIPNGEANVKKEIQLLRRLRHKNVI 69 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHH-------------HHHHSTTHHHHHHHHHHHHTTCCCTTBC
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccc-------------cccccchhHHHHHHHHHHHHhcCCCCee
Confidence 4578999999999999999999965 6899999998311 1111123457789999999999999999
Q ss_pred eEEEEEe--cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 706 KLYCSIT--SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 706 ~l~~~~~--~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
++++++. +....++||||++++ +.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 70 ~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~ 145 (305)
T 2wtk_C 70 QLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTG 145 (305)
T ss_dssp CEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTT
T ss_pred EEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCC
Confidence 9999984 456789999999876 888887766677999999999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCC--CCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK--INEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
+.+||+|||.+................||+.|+|||++.+.. ++.++||||||+++|||++|+.||... +..+
T Consensus 146 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~ 220 (305)
T 2wtk_C 146 GTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD-----NIYK 220 (305)
T ss_dssp CCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHH
T ss_pred CcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc-----hHHH
Confidence 999999999998765443333334557899999999987644 377999999999999999999998532 2222
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH--hhccCC
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM--LEEAEP 922 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~--L~~~~~ 922 (947)
.......... ..+......+.+++.+|++.||++|||+.|++++ +++..+
T Consensus 221 ~~~~i~~~~~-----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~ 272 (305)
T 2wtk_C 221 LFENIGKGSY-----------AIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHP 272 (305)
T ss_dssp HHHHHHHCCC-----------CCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCC
T ss_pred HHHHHhcCCC-----------CCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCCC
Confidence 2221111111 1112234567889999999999999999999964 444433
No 142
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=5.7e-40 Score=358.02 Aligned_cols=269 Identities=24% Similarity=0.290 Sum_probs=190.9
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhh--ccccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSA--VRHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv 705 (947)
.++|++.+.||+|+||.||+|+.. ++.||||++.. .....+.+|.+++.. ++||||+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~--------------------~~~~~~~~e~~~~~~~~~~h~~i~ 60 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSS--------------------REERSWFREAEIYQTVMLRHENIL 60 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC---------------------TTHHHHHHHHHHHTSTTCCC-CBC
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEecc--------------------cchhhHHHHHHHHHHHhccCccee
Confidence 468999999999999999999876 89999998831 233567778888887 7999999
Q ss_pred eEEEEEecCC----ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEeccCCCC
Q 002250 706 KLYCSITSED----SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHG-----FDRPVIHRDVKSS 776 (947)
Q Consensus 706 ~l~~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~-----~~~~ivH~Dlkp~ 776 (947)
++++++.... ..++||||+++|+|.+++.. ..+++..+..++.|++.||+|||.. ++.+|+||||||+
T Consensus 61 ~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~ 137 (303)
T 3gxj_A 61 GFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSK 137 (303)
T ss_dssp CEEEEEEEECSSSEEEEEEEECCTTCCHHHHHHH---CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGG
T ss_pred eeeeecccCCCccceeEEEEeccCCCCHHHHHhc---cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHH
Confidence 9999998876 67999999999999999976 3577888899999999999999932 1579999999999
Q ss_pred CeEecCCCCeEEeccccceecccCCCCc--ceecccccccccCccccccC------CCCCccchHHHHHHHHHHHhC---
Q 002250 777 NILLDLEWKPRIADFGLAKIVQTGEAGD--LTHVIAGTHGYIAPEYAYTC------KINEKSDVYSFGVVLMELVTG--- 845 (947)
Q Consensus 777 NIll~~~~~~kl~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~slGv~l~elltg--- 845 (947)
||+++.++.+||+|||+++......... ......||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 138 Nil~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~ 217 (303)
T 3gxj_A 138 NILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI 217 (303)
T ss_dssp GC-CCTTCCC-BCCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCB
T ss_pred HeEECCCCCEEEeecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997655433211 12234699999999998776 344689999999999999999
Q ss_pred -------CCCCCCCCCCcccHHHHHHhhccccccccccccCCCCc--cCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 846 -------KRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISE--ILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 846 -------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+.||.................. .....+..+. ...+.+..+.+++.+||+.||++|||+.|+++.
T Consensus 218 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~ 291 (303)
T 3gxj_A 218 GGIHEDYQLPYYDLVPSDPSVEEMRKVVC------EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT 291 (303)
T ss_dssp TTBC-CCCCTTTTTCC-CCCCC-CHHHHT------TSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred ccccceeeccccccCCCCccHHHHHHHHH------HhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence 5565432211111111000000 0111112211 123667789999999999999999999999999
Q ss_pred hhccCCCCcc
Q 002250 917 LEEAEPCSVT 926 (947)
Q Consensus 917 L~~~~~~~~~ 926 (947)
|+++......
T Consensus 292 L~~l~~~~~~ 301 (303)
T 3gxj_A 292 LSQLSQQEGI 301 (303)
T ss_dssp HHC-CCC---
T ss_pred HHHhhhhccc
Confidence 9998876543
No 143
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=359.74 Aligned_cols=258 Identities=20% Similarity=0.213 Sum_probs=202.7
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.+ +|+.||||++... ..........+.+|+.++..++||||++
T Consensus 60 ~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~--------------~~~~~~~~~~~~~E~~il~~~~hp~Iv~ 125 (412)
T 2vd5_A 60 RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKW--------------DMLKRGEVSCFREERDVLVNGDRRWITQ 125 (412)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH--------------HHHHHGGGCCHHHHHHHHHHSCTTTBCC
T ss_pred hhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHH--------------HhhhHHHHHHHHHHHHHHHhcCCCCeee
Confidence 478999999999999999999975 7999999998310 0111233456889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+++..|+||||+++|+|.+++.+.+ ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+
T Consensus 126 l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~v 201 (412)
T 2vd5_A 126 LHFAFQDENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHI 201 (412)
T ss_dssp EEEEEECSSEEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCE
T ss_pred EEEEEeeCCEEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCE
Confidence 9999999999999999999999999998643 36899999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccc-------cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY-------TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
||+|||+++........ .....+||+.|+|||++. ...++.++|||||||++|||++|+.||... +.
T Consensus 202 kL~DFGla~~~~~~~~~-~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~-----~~ 275 (412)
T 2vd5_A 202 RLADFGSCLKLRADGTV-RSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD-----ST 275 (412)
T ss_dssp EECCCTTCEECCTTSCE-ECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS-----SH
T ss_pred EEeechhheeccCCCcc-ccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC-----CH
Confidence 99999999876543321 122457999999999997 356899999999999999999999999532 12
Q ss_pred HHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCC---CCHHHHHHH
Q 002250 860 VNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFR---PSMRVVVQM 916 (947)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---Pt~~ev~~~ 916 (947)
.+........... ..++......+..+.+++.+|+. +|.+| |++.|++++
T Consensus 276 ~~~~~~i~~~~~~------~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H 328 (412)
T 2vd5_A 276 AETYGKIVHYKEH------LSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH 328 (412)
T ss_dssp HHHHHHHHTHHHH------CCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred HHHHHHHHhcccC------cCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence 2221111111100 01111122334568889999999 99998 689998754
No 144
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=3.8e-38 Score=340.08 Aligned_cols=254 Identities=25% Similarity=0.329 Sum_probs=198.8
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
++.++|.+.+.||+|+||+||+|+.. +++.||+|++... ......+.+.+|++++++++||||
T Consensus 19 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~----------------~~~~~~~~~~~E~~~l~~l~hp~i 82 (285)
T 3is5_A 19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKD----------------RSQVPMEQIEAEIEVLKSLDHPNI 82 (285)
T ss_dssp CHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGG----------------GCCSCHHHHHHHHHHHHTCCCTTB
T ss_pred ChhhheeecceeccCCCeEEEEEEEccCCceEEEEEeecc----------------ccchhHHHHHHHHHHHHhCCCchH
Confidence 45688999999999999999999965 6899999998321 122445788999999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhc--CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe--
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTC--HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL-- 780 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll-- 780 (947)
+++++++...+..++||||+++|+|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 83 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~ 159 (285)
T 3is5_A 83 IKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQD 159 (285)
T ss_dssp CCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESS
T ss_pred HhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEec
Confidence 99999999999999999999999999998653 2356899999999999999999999 8999999999999999
Q ss_pred -cCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 781 -DLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 781 -~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
+.++.+||+|||++........ .....||+.|+|||++. +.++.++||||||+++|||++|+.||... ..
T Consensus 160 ~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~-----~~ 230 (285)
T 3is5_A 160 TSPHSPIKIIDFGLAELFKSDEH---STNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGT-----SL 230 (285)
T ss_dssp SSTTCCEEECCCCCCCC-------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCS-----SH
T ss_pred CCCCCCEEEEeeecceecCCccc---CcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCC-----CH
Confidence 4568899999999976544322 23456899999999875 56889999999999999999999998532 12
Q ss_pred HHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 860 VNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.+........... ...........+.+++.+|++.||++|||+.|+++
T Consensus 231 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 231 EEVQQKATYKEPN--------YAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHHHHHHHHCCCC--------CCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHhhhccCCcc--------cccccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1111111111110 00000112346788999999999999999999986
No 145
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=2.2e-38 Score=348.74 Aligned_cols=253 Identities=24% Similarity=0.318 Sum_probs=193.8
Q ss_pred hhccCCcccccccCceeEEEEEe----CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL----NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .........+.+|+.++++++|||
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~-------------~~~~~~~~~~~~E~~~l~~l~hp~ 82 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMI-------------VRNAKDTAHTKAERNILEEVKHPF 82 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC---------------------------HHHHHHHCCCTT
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHh-------------hhhhhHHHHHHHHHHHHHhCCCCC
Confidence 46899999999999999999996 4789999999853211 011223456788999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..++..|+||||+++|+|.+++... ..+++.....++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 83 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~ 157 (327)
T 3a62_A 83 IVDLIYAFQTGGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQ 157 (327)
T ss_dssp BCCEEEEEECSSCEEEEEECCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTT
T ss_pred ccceeEEEEcCCEEEEEEeCCCCCcHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCC
Confidence 999999999999999999999999999999864 35788899999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
+.+||+|||+++....... ......||+.|+|||++.+..++.++||||||+++|||++|+.||... +.....
T Consensus 158 ~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-----~~~~~~ 230 (327)
T 3a62_A 158 GHVKLTDFGLCKESIHDGT--VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE-----NRKKTI 230 (327)
T ss_dssp SCEEECCCSCC------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHH
T ss_pred CcEEEEeCCcccccccCCc--cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC-----CHHHHH
Confidence 9999999999975433221 123457999999999999989999999999999999999999999532 112222
Q ss_pred HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 002250 864 YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP-----SMRVVVQM 916 (947)
Q Consensus 864 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~ev~~~ 916 (947)
........ ..+......+.+++.+|++.||++|| ++.|++++
T Consensus 231 ~~i~~~~~-----------~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 231 DKILKCKL-----------NLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp HHHHHTCC-----------CCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred HHHHhCCC-----------CCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 11111111 11122345688899999999999999 77787753
No 146
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=2.1e-38 Score=353.47 Aligned_cols=253 Identities=23% Similarity=0.258 Sum_probs=194.4
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.. +++.||||++... ......+.+|+.++++++||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~hpniv~ 80 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERG------------------AAIDENVQREIINHRSLRHPNIVR 80 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESS------------------TTSCHHHHHHHHHHHHCCCTTBCC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecC------------------ccccHHHHHHHHHHHhCCCCCCCc
Confidence 468999999999999999999976 7899999998421 123356889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC-
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK- 785 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~- 785 (947)
+++++..++..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 81 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~ 155 (361)
T 3uc3_A 81 FKEVILTPTHLAIIMEYASGGELYERICNA--GRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAP 155 (361)
T ss_dssp EEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSC
T ss_pred EEEEEeeCCEEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCc
Confidence 999999999999999999999999999764 35899999999999999999999 899999999999999987765
Q ss_pred -eEEeccccceecccCCCCcceecccccccccCccccccCCCCCc-cchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 786 -PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEK-SDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 786 -~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
+||+|||+++...... ......||+.|+|||++.+..++.+ +||||+||++|||++|+.||..... ........
T Consensus 156 ~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-~~~~~~~~ 231 (361)
T 3uc3_A 156 RLKICDFGYSKSSVLHS---QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE-PRDYRKTI 231 (361)
T ss_dssp CEEECCCCCC------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC-----CCCHHHHH
T ss_pred eEEEeecCccccccccC---CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc-HHHHHHHH
Confidence 9999999997433222 1234579999999999988887665 8999999999999999999964322 22222222
Q ss_pred HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 864 YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 864 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.......... +. .......+.+++.+|++.||++|||+.|++++
T Consensus 232 ~~~~~~~~~~--------~~-~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 232 QRILSVKYSI--------PD-DIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp HHHHTTCCCC--------CT-TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHhcCCCCC--------CC-cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 2222111110 00 01123567889999999999999999999975
No 147
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=349.13 Aligned_cols=250 Identities=20% Similarity=0.234 Sum_probs=194.8
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVN 703 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~n 703 (947)
.+.++|++.+.||+|+||+||+|+.. +++.||||++..... .......+..|+..+.++ +|||
T Consensus 54 ~~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---------------~~~~~~~~~~e~~~~~~~~~h~~ 118 (311)
T 3p1a_A 54 FFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFR---------------GPKDRARKLAEVGSHEKVGQHPC 118 (311)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCC---------------SHHHHHHHHHHHHHHHHHCCCTT
T ss_pred hhhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEeccccc---------------ChHHHHHHHHHHHHHHHhcCCCc
Confidence 44578999999999999999999976 799999998742210 111223445566666555 8999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++.+++..++||||+ +++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 119 iv~l~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~ 193 (311)
T 3p1a_A 119 CVRLEQAWEEGGILYLQTELC-GPSLQQHCEAW-GASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPR 193 (311)
T ss_dssp BCCEEEEEEETTEEEEEEECC-CCBHHHHHHHH-CSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGG
T ss_pred EEEEEEEEEeCCEEEEEEecc-CCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCC
Confidence 999999999999999999999 77999988764 346899999999999999999999 7899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
+.+||+|||++........ .....||+.|+|||++.+ .++.++|||||||++|||++|..|+... .....
T Consensus 194 ~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~-----~~~~~- 263 (311)
T 3p1a_A 194 GRCKLGDFGLLVELGTAGA---GEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG-----EGWQQ- 263 (311)
T ss_dssp GCEEECCCTTCEECC---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH-----HHHHH-
T ss_pred CCEEEccceeeeecccCCC---CcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc-----cHHHH-
Confidence 9999999999987654322 234569999999998875 7999999999999999999998776321 11111
Q ss_pred HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 864 YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 864 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
...... . .+........+.+++.+|++.||++|||+.|++++
T Consensus 264 ---~~~~~~-----~---~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 264 ---LRQGYL-----P---PEFTAGLSSELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp ---HTTTCC-----C---HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ---HhccCC-----C---cccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 111000 0 11122334678899999999999999999999863
No 148
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=1.2e-39 Score=359.38 Aligned_cols=266 Identities=27% Similarity=0.316 Sum_probs=206.7
Q ss_pred hccCCcccccccCceeEEEEEe-----CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVL-----NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
++|++.+.||+|+||.||+|+. .+++.||||++... .....+.+.+|++++++++|||
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-----------------~~~~~~~~~~E~~~l~~l~h~~ 85 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS-----------------GPDQQRDFQREIQILKALHSDF 85 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC-----------------CHHHHHHHHHHHHHHHTCCCTT
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC-----------------CHHHHHHHHHHHHHHHhcCCCc
Confidence 6788999999999999999984 36889999998421 1123356899999999999999
Q ss_pred cceEEEEEec--CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 704 VVKLYCSITS--EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 704 iv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
|+++++++.. ....++||||+++++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 86 i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~ 161 (327)
T 3lxl_A 86 IVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVE 161 (327)
T ss_dssp BCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEE
T ss_pred eeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEEC
Confidence 9999999874 455789999999999999998632 35899999999999999999999 89999999999999999
Q ss_pred CCCCeEEeccccceecccCCCCc-ceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC-----
Q 002250 782 LEWKPRIADFGLAKIVQTGEAGD-LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGD----- 855 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~----- 855 (947)
.++.+||+|||+++......... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......
T Consensus 162 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~ 241 (327)
T 3lxl_A 162 SEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMM 241 (327)
T ss_dssp ETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHC
T ss_pred CCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhc
Confidence 99999999999998765433211 122345788899999999888999999999999999999999998432100
Q ss_pred ----cccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCC
Q 002250 856 ----SKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCS 924 (947)
Q Consensus 856 ----~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~ 924 (947)
............ ........+...+..+.+++.+|++.||++|||+.|++++|+.+....
T Consensus 242 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 242 GCERDVPALSRLLELL---------EEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS 305 (327)
T ss_dssp C----CCHHHHHHHHH---------HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred ccccccccHHHHHHHh---------hcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 000000000000 011112223344567889999999999999999999999999876554
No 149
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=6.6e-39 Score=356.08 Aligned_cols=277 Identities=16% Similarity=0.171 Sum_probs=204.4
Q ss_pred hccCCcccccccCceeEEEEEeC----CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN----SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
++|++.+.||+|+||+||+|+.. ++..||||++..... ....+...........+.+|+..++.++||||
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~------~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni 110 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENG------PLFSELKFYQRVAKKDCIKKWIERKQLDYLGI 110 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-C------HHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCC
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCc------chHHHHHHHHHHhhhHHHHHHHhhccccccCc
Confidence 67999999999999999999975 578899999853211 00011111122234567889999999999999
Q ss_pred ceEEEEEec----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 705 VKLYCSITS----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 705 v~l~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
+++++++.. +...++||||+ +++|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 111 ~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 184 (345)
T 2v62_A 111 PLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLL 184 (345)
T ss_dssp CCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred ceeecccccccCCCcEEEEEEecc-CCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEE
Confidence 999999987 67789999999 999999998744 6899999999999999999999 8899999999999999
Q ss_pred cCCC--CeEEeccccceecccCCCC-----cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 002250 781 DLEW--KPRIADFGLAKIVQTGEAG-----DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEF 853 (947)
Q Consensus 781 ~~~~--~~kl~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~ 853 (947)
+.++ .+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 185 ~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~ 264 (345)
T 2v62_A 185 GYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNL 264 (345)
T ss_dssp ESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGT
T ss_pred ccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence 9887 9999999999876443211 11134579999999999999889999999999999999999999995433
Q ss_pred CCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 854 GDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
................. ......... ....+..+.+++.+||+.||++|||+.++++.|++...
T Consensus 265 ~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 265 KDPVAVQTAKTNLLDEL---PQSVLKWAP--SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp TCHHHHHHHHHHHHHTT---THHHHHHSC--TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred cccHHHHHHHHhhcccc---cHHHHhhcc--ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 22222222111111000 000000000 00234578899999999999999999999999998664
No 150
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=3.2e-38 Score=349.64 Aligned_cols=251 Identities=25% Similarity=0.283 Sum_probs=202.6
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv 705 (947)
.++|++.+.||+|+||+||+|+.+ +++.||||++... ..........+.+|..+++.+ +||||+
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~--------------~~~~~~~~~~~~~E~~~l~~~~~hp~iv 84 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKD--------------VVIQDDDVECTMVEKRVLALPGKPPFLT 84 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHTCTTCCTTBC
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHH--------------HhhcchHHHHHHHHHHHHHhcCCCCEEe
Confidence 478999999999999999999976 5889999998311 111224456788999999988 899999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++...+..|+||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 85 ~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ 159 (353)
T 2i0e_A 85 QLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGH 159 (353)
T ss_dssp CEEEEEECSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSC
T ss_pred eEEEEEEcCCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCc
Confidence 99999999999999999999999999998643 5889999999999999999999 889999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+|||+++....... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||... +..+....
T Consensus 160 vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~ 232 (353)
T 2i0e_A 160 IKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQS 232 (353)
T ss_dssp EEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEEEeCCcccccccCCc--ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC-----CHHHHHHH
Confidence 99999999975432221 233457999999999999999999999999999999999999999532 22222222
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCC-----HHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPS-----MRVVVQ 915 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~ev~~ 915 (947)
....... ++......+.+++.+|++.||++||+ +.++.+
T Consensus 233 i~~~~~~-----------~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 233 IMEHNVA-----------YPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp HHHCCCC-----------CCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred HHhCCCC-----------CCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 2211111 12233456888999999999999995 466654
No 151
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=2e-39 Score=356.07 Aligned_cols=262 Identities=26% Similarity=0.350 Sum_probs=204.7
Q ss_pred hcc-CCcccccccCceeEEEEEeC-----CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc
Q 002250 629 DAV-KPENLIGKGGSGNVYKVVLN-----SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV 702 (947)
Q Consensus 629 ~~~-~~~~~iG~G~~g~Vy~~~~~-----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 702 (947)
++| ++.+.||+|+||+||++.+. +++.||||++.... .......+.+|++++++++||
T Consensus 30 ~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~ 93 (318)
T 3lxp_A 30 KRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA----------------GPQHRSGWKQEIDILRTLYHE 93 (318)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC----------------CHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc----------------ChHHHHHHHHHHHHHHhCCCc
Confidence 455 88999999999999988643 58899999984211 112346688999999999999
Q ss_pred ccceEEEEEecC--CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 703 NVVKLYCSITSE--DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 703 niv~l~~~~~~~--~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
||+++++++... ...++||||+++|+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 94 ~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~ 167 (318)
T 3lxp_A 94 HIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLL 167 (318)
T ss_dssp TBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred chhhEEEEEecCCCceEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEE
Confidence 999999999874 5678999999999999999863 4899999999999999999999 8899999999999999
Q ss_pred cCCCCeEEeccccceecccCCCC-cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC----
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAG-DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGD---- 855 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~---- 855 (947)
+.++.+||+|||++......... .......+|..|+|||++.+..++.++||||||+++|||++|+.||......
T Consensus 168 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~ 247 (318)
T 3lxp_A 168 DNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLEL 247 (318)
T ss_dssp CTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHH
T ss_pred cCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhh
Confidence 99999999999999877554321 1122345788999999999988999999999999999999999998432100
Q ss_pred ---cccHHH--HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 856 ---SKDIVN--WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 856 ---~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
...... ....... .......+...+..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~ 309 (318)
T 3lxp_A 248 IGIAQGQMTVLRLTELLE---------RGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVH 309 (318)
T ss_dssp HCSCCHHHHHHHHHHHHH---------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcccccchhHHHHHHHHh---------cccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence 000000 0000000 11112223344567899999999999999999999999998764
No 152
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=3.9e-39 Score=353.75 Aligned_cols=261 Identities=24% Similarity=0.307 Sum_probs=208.1
Q ss_pred hhccCCcccccccCceeEEEEEe------CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-c
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL------NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-R 700 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~ 700 (947)
.++|++.+.||+|+||+||+|+. .+++.||||++.... .......+.+|+.+++++ +
T Consensus 26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~~ 89 (316)
T 2xir_A 26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA----------------THSEHRALMSELKILIHIGH 89 (316)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTC----------------CHHHHHHHHHHHHHHHHHCC
T ss_pred hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCC----------------CcHHHHHHHHHHHHHHhccc
Confidence 47899999999999999999984 246899999984211 112345788999999999 7
Q ss_pred ccccceEEEEEecCC-ccEEEEeccCCCChHHHhhhcCC--------------ccCCHHHHHHHHHHHHHHHHHHhcCCC
Q 002250 701 HVNVVKLYCSITSED-SNLLVYEYLPNGSLWDRLHTCHK--------------IEMDWVVRYAIAVGAAKGLEYLHHGFD 765 (947)
Q Consensus 701 h~niv~l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~--------------~~~~~~~~~~i~~~ia~~l~yLH~~~~ 765 (947)
||||+++++++..++ ..++||||+++|+|.+++..... ..+++..+..++.|++.||+||| +
T Consensus 90 hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~ 166 (316)
T 2xir_A 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---S 166 (316)
T ss_dssp CTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---H
T ss_pred CCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---h
Confidence 999999999988755 48999999999999999987532 12789999999999999999999 8
Q ss_pred CCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-
Q 002250 766 RPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT- 844 (947)
Q Consensus 766 ~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt- 844 (947)
.+|+||||||+||+++.++.+||+|||+++...............||+.|+|||++.+..++.++||||||+++|||++
T Consensus 167 ~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~ 246 (316)
T 2xir_A 167 RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSL 246 (316)
T ss_dssp TTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999987655443333334567899999999999999999999999999999998
Q ss_pred CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 845 GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 845 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
|+.||..... ............ . ...+...+..+.+++.+||+.||++|||+.|++++|+++.
T Consensus 247 g~~p~~~~~~-~~~~~~~~~~~~---~----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 309 (316)
T 2xir_A 247 GASPYPGVKI-DEEFCRRLKEGT---R----------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 309 (316)
T ss_dssp SCCSSTTCCC-SHHHHHHHHHTC---C----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCcccch-hHHHHHHhccCc---c----------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 9999854321 112222111110 0 1111223456889999999999999999999999998754
No 153
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.6e-39 Score=379.47 Aligned_cols=256 Identities=26% Similarity=0.395 Sum_probs=208.3
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLY 708 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 708 (947)
++|++.+.||+|+||+||+|.+.++..||||++... ....+.|.+|++++++++||||++++
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~hpniv~~~ 328 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG------------------TMSPEAFLQEAQVMKKLRHEKLVQLY 328 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTT------------------SSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCC------------------CCCHHHHHHHHHHHHhCCCCCEeeEE
Confidence 678889999999999999999988889999998421 12346789999999999999999999
Q ss_pred EEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEE
Q 002250 709 CSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRI 788 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl 788 (947)
+++.+ +..++||||+++|+|.+++.......+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||
T Consensus 329 ~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl 404 (535)
T 2h8h_A 329 AVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKV 404 (535)
T ss_dssp EEECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEE
Confidence 99876 67899999999999999998654456899999999999999999999 899999999999999999999999
Q ss_pred eccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhc
Q 002250 789 ADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 789 ~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
+|||+++....... .......++..|+|||++..+.++.++|||||||++|||++ |+.||... ...++.+.+.
T Consensus 405 ~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~--~~~~~~~~i~--- 478 (535)
T 2h8h_A 405 ADFGLARLIEDNEY-TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM--VNREVLDQVE--- 478 (535)
T ss_dssp CCTTSTTTCCCHHH-HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTC--CHHHHHHHHH---
T ss_pred cccccceecCCCce-ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHH---
Confidence 99999976543211 11112346789999999999999999999999999999999 89998532 1112222111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
... ....+..++..+.+++.+||+.||++|||+.++++.|+++-.
T Consensus 479 -~~~---------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~ 523 (535)
T 2h8h_A 479 -RGY---------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 523 (535)
T ss_dssp -TTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSC
T ss_pred -cCC---------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhh
Confidence 111 011223345678899999999999999999999999998753
No 154
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=351.18 Aligned_cols=249 Identities=17% Similarity=0.196 Sum_probs=202.8
Q ss_pred hccCCcccccccCceeEEEEE------eCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc--
Q 002250 629 DAVKPENLIGKGGSGNVYKVV------LNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-- 700 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-- 700 (947)
++|.+.+.||+|+||+||+|. ..+++.||||++.. ....++.+|++++++++
T Consensus 65 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~--------------------~~~~~~~~e~~~~~~l~~~ 124 (365)
T 3e7e_A 65 KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKP--------------------ANPWEFYIGTQLMERLKPS 124 (365)
T ss_dssp SEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESS--------------------CCHHHHHHHHHHHHHSCGG
T ss_pred EEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCC--------------------CChhHHHHHHHHHHHhhhh
Confidence 678899999999999999994 44689999999831 23456788888888886
Q ss_pred -ccccceEEEEEecCCccEEEEeccCCCChHHHhhhc---CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCC
Q 002250 701 -HVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTC---HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSS 776 (947)
Q Consensus 701 -h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~---~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~ 776 (947)
|+||+++++++..++..++||||+++|+|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+
T Consensus 125 ~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~ 201 (365)
T 3e7e_A 125 MQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPD 201 (365)
T ss_dssp GGGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGG
T ss_pred hhhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHH
Confidence 999999999999999999999999999999999753 3456999999999999999999999 899999999999
Q ss_pred CeEecC-----------CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhC
Q 002250 777 NILLDL-----------EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTG 845 (947)
Q Consensus 777 NIll~~-----------~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg 845 (947)
|||++. ++.+||+|||+|+..............+||+.|+|||++.+..++.++|||||||++|||+||
T Consensus 202 NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg 281 (365)
T 3e7e_A 202 NFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFG 281 (365)
T ss_dssp GEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHS
T ss_pred HEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhC
Confidence 999998 899999999999876544333344456799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCC-CCHHHHHHHhhcc
Q 002250 846 KRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFR-PSMRVVVQMLEEA 920 (947)
Q Consensus 846 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-Pt~~ev~~~L~~~ 920 (947)
+.||....... . .....+.... ....+.+++..|++.+|.+| |+++++.+.|+++
T Consensus 282 ~~pf~~~~~~~--------------~----~~~~~~~~~~--~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~ 337 (365)
T 3e7e_A 282 TYMKVKNEGGE--------------C----KPEGLFRRLP--HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKV 337 (365)
T ss_dssp SCCCEEEETTE--------------E----EECSCCTTCS--SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHH
T ss_pred CCccccCCCCc--------------e----eechhccccC--cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH
Confidence 99984322110 0 0111111111 13456678889999999998 6888888888764
No 155
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-38 Score=362.34 Aligned_cols=250 Identities=25% Similarity=0.357 Sum_probs=204.5
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|.+.+.||+|+||.||+|+.. +|+.||||++... ..........+.+|+.+++.++||||++
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~--------------~~~~~~~~~~~~~Ei~~l~~l~HpnIv~ 80 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQ--------------KIRSLDVVGKIRREIQNLKLFRHPHIIK 80 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHH--------------HHHHTTTHHHHHHHHHHHTTCCCTTBCC
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhh--------------hccCHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 467899999999999999999976 7999999998311 1111234567899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 81 l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~v 155 (476)
T 2y94_A 81 LYQVISTPSDIFMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNA 155 (476)
T ss_dssp EEEEEECSSEEEEEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCE
T ss_pred EEEEEEECCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCe
Confidence 999999999999999999999999999863 45899999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||+++....... ....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.... .......
T Consensus 156 kL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~-----~~~~~~~ 227 (476)
T 2y94_A 156 KIADFGLSNMMSDGEF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH-----VPTLFKK 227 (476)
T ss_dssp EECCCSSCEECCTTCC---BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS-----SHHHHHH
T ss_pred EEEeccchhhcccccc---ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC-----HHHHHHH
Confidence 9999999987654332 224579999999999988765 689999999999999999999995321 1122111
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
...... ..+......+.+++.+|++.||++|||+.|+++
T Consensus 228 i~~~~~-----------~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 228 ICDGIF-----------YTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp HHTTCC-----------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HhcCCc-----------CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 111111 111122346788999999999999999999996
No 156
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=3.2e-38 Score=340.76 Aligned_cols=254 Identities=24% Similarity=0.354 Sum_probs=207.8
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
+.+..+|++.+.||+|+||.||+|+.. +++.||||++.. ....+.+|++++++++|||
T Consensus 7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---------------------~~~~~~~e~~~l~~l~h~~ 65 (284)
T 2a19_B 7 KRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY---------------------NNEKAEREVKALAKLDHVN 65 (284)
T ss_dssp HHHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEEC---------------------CSGGGHHHHHHHHHCCCTT
T ss_pred chhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecc---------------------ccHHHHHHHHHHHhCCCCC
Confidence 455688999999999999999999976 799999999831 1246788999999999999
Q ss_pred cceEEEEEec----------------CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002250 704 VVKLYCSITS----------------EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRP 767 (947)
Q Consensus 704 iv~l~~~~~~----------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ 767 (947)
|+++++++.. ....++||||+++++|.+++.......+++..+..++.|++.||+||| +.+
T Consensus 66 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ 142 (284)
T 2a19_B 66 IVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKK 142 (284)
T ss_dssp BCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred EEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence 9999998864 345789999999999999998765567999999999999999999999 889
Q ss_pred eEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCC
Q 002250 768 VIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKR 847 (947)
Q Consensus 768 ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~ 847 (947)
|+||||||+||+++.++.+||+|||++........ .....||+.|+|||++.+..++.++||||||+++|||++|..
T Consensus 143 i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~ 219 (284)
T 2a19_B 143 LINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCD 219 (284)
T ss_dssp EECSCCSGGGEEEEETTEEEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCS
T ss_pred eeeccCCHHHEEEcCCCCEEECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999987654432 223468999999999999889999999999999999999998
Q ss_pred CCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCCc
Q 002250 848 PIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCSV 925 (947)
Q Consensus 848 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~~ 925 (947)
|+.. ....... .. +..++. ..+..+.+++.+|++.||++|||+.|++++|+.++..+.
T Consensus 220 ~~~~-------~~~~~~~-~~---------~~~~~~---~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 220 TAFE-------TSKFFTD-LR---------DGIISD---IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE 277 (284)
T ss_dssp SHHH-------HHHHHHH-HH---------TTCCCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred cchh-------HHHHHHH-hh---------cccccc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence 8621 1111111 10 011111 123457789999999999999999999999999876653
No 157
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.9e-39 Score=360.42 Aligned_cols=259 Identities=26% Similarity=0.335 Sum_probs=193.2
Q ss_pred ccCCcccccccCceeEEEEEeC--CC--cEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 630 AVKPENLIGKGGSGNVYKVVLN--SG--KELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 630 ~~~~~~~iG~G~~g~Vy~~~~~--~~--~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
.|++.+.||+|+||+||+|+.. ++ ..||||.+... ......+.+.+|+.++++++||||+
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~----------------~~~~~~~~~~~E~~il~~l~hpnIv 153 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI----------------TDIGEVSQFLTEGIIMKDFSHPNVL 153 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC----------------SCSHHHHHHHHHHTTSTTCCCTTBC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC----------------CCHHHHHHHHHHHHHHHhCCCCCcc
Confidence 4667789999999999999854 22 36899987321 1113346789999999999999999
Q ss_pred eEEEEEec-CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 706 KLYCSITS-EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 706 ~l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
++++++.. ++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 154 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~ 229 (373)
T 3c1x_A 154 SLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKF 229 (373)
T ss_dssp CCCEEECCCSSCCEEEEECCTTCBHHHHHHCT-TCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTC
T ss_pred eEEEEEEcCCCCeEEEEECCCCCCHHHHHhhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCC
Confidence 99998754 56789999999999999999763 346789999999999999999999 88999999999999999999
Q ss_pred CeEEeccccceecccCCCCc--ceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGD--LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~ 861 (947)
.+||+|||+++......... ......+|+.|+|||++.+..++.++||||||+++|||++ |.+||.... ..+...
T Consensus 230 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~--~~~~~~ 307 (373)
T 3c1x_A 230 TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN--TFDITV 307 (373)
T ss_dssp CEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC--SSCHHH
T ss_pred CEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC--HHHHHH
Confidence 99999999998654332211 1223457889999999999999999999999999999999 566664321 222222
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
.... ... ...+...+..+.+++.+||+.||++|||+.|+++.|+++...
T Consensus 308 ~~~~---~~~----------~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~ 356 (373)
T 3c1x_A 308 YLLQ---GRR----------LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST 356 (373)
T ss_dssp HHHT---TCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHc---CCC----------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 2211 111 111223345688999999999999999999999999986543
No 158
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=353.62 Aligned_cols=253 Identities=22% Similarity=0.312 Sum_probs=194.9
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc--cccce
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH--VNVVK 706 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~ 706 (947)
++|++.+.||+|+||.||+|...+++.||||++.... ........+.+|+.++++++| |||++
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~~~~~~iv~ 73 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEE---------------ADNQTLDSYRNEIAYLNKLQQHSDKIIR 73 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTT---------------CCHHHHHHHHHHHHHHHHHTTTCTTBCC
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccc---------------cchHHHHHHHHHHHHHHhhhhcCCceEE
Confidence 5688999999999999999998889999999984221 111234678899999999987 99999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..+...++|||+ .+++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++ ++.+
T Consensus 74 ~~~~~~~~~~~~lv~e~-~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~ 146 (343)
T 3dbq_A 74 LYDYEITDQYIYMVMEC-GNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGML 146 (343)
T ss_dssp EEEEEECSSEEEEEECC-CSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEE
T ss_pred EeeeEeeCCEEEEEEeC-CCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcE
Confidence 99999999999999995 588999999874 45889999999999999999999 88999999999999997 5789
Q ss_pred EEeccccceecccCCCCcceecccccccccCcccccc-----------CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-----------CKINEKSDVYSFGVVLMELVTGKRPIVPEFGD 855 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~ 855 (947)
||+|||+++...............||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....
T Consensus 147 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~- 225 (343)
T 3dbq_A 147 KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN- 225 (343)
T ss_dssp EECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS-
T ss_pred EEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh-
Confidence 9999999987655443333345679999999999865 6688999999999999999999999954321
Q ss_pred cccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 856 SKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.............. ...+......+.+++.+||+.||.+|||+.|++++
T Consensus 226 ---~~~~~~~~~~~~~~---------~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 226 ---QISKLHAIIDPNHE---------IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp ---HHHHHHHHHCTTSC---------CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ---HHHHHHHHhcCCcc---------cCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 11111111111110 11111223467889999999999999999999865
No 159
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.5e-38 Score=349.09 Aligned_cols=265 Identities=23% Similarity=0.241 Sum_probs=202.4
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.++.++|++.+.||+|+||+||+|... +++.||||++... ..........+.+.+|++++++++|||
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~------------~~~~~~~~~~~~~~~E~~~l~~l~hpn 89 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKN------------KIRQINPKDVERIKTEVRLMKKLHHPN 89 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHH------------HHHC---CHHHHHHHHHHHHHHCCCTT
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhh------------hhcccCHHHHHHHHHHHHHHHhCCCCC
Confidence 567899999999999999999999965 6889999998311 011112344577899999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhc--------------------------------------CCccCCHHH
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTC--------------------------------------HKIEMDWVV 745 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--------------------------------------~~~~~~~~~ 745 (947)
|+++++++.+++..++||||+++|+|.+++... ....+++..
T Consensus 90 iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (345)
T 3hko_A 90 IARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKL 169 (345)
T ss_dssp BCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHH
T ss_pred cceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHH
Confidence 999999999999999999999999999998521 012346777
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC--CeEEeccccceecccCCCCc--ceecccccccccCcccc
Q 002250 746 RYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW--KPRIADFGLAKIVQTGEAGD--LTHVIAGTHGYIAPEYA 821 (947)
Q Consensus 746 ~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~--~~kl~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~ 821 (947)
+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+++......... ......||+.|+|||++
T Consensus 170 ~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~ 246 (345)
T 3hko_A 170 ISNIMRQIFSALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVL 246 (345)
T ss_dssp HHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhh
Confidence 8889999999999999 88999999999999998776 89999999998764432211 22345799999999998
Q ss_pred cc--CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhc
Q 002250 822 YT--CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHC 899 (947)
Q Consensus 822 ~~--~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~c 899 (947)
.+ ..++.++||||||+++|||++|+.||.... ..+............ . .+........+.+++.+|
T Consensus 247 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~li~~~ 314 (345)
T 3hko_A 247 NTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVN-----DADTISQVLNKKLCF---E----NPNYNVLSPLARDLLSNL 314 (345)
T ss_dssp TCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHCCCCT---T----SGGGGGSCHHHHHHHHHH
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-----hHHHHHHHHhccccc---C----CcccccCCHHHHHHHHHH
Confidence 65 678899999999999999999999985321 112212211111110 0 111112345688999999
Q ss_pred cCCCCCCCCCHHHHHHH
Q 002250 900 TNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 900 l~~dP~~RPt~~ev~~~ 916 (947)
++.||.+|||+.|++++
T Consensus 315 l~~~p~~Rps~~~~l~h 331 (345)
T 3hko_A 315 LNRNVDERFDAMRALQH 331 (345)
T ss_dssp SCSCTTTSCCHHHHHHS
T ss_pred cCCChhHCCCHHHHhcC
Confidence 99999999999999873
No 160
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=4.3e-38 Score=352.19 Aligned_cols=246 Identities=24% Similarity=0.343 Sum_probs=193.8
Q ss_pred cccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEEEEEe
Q 002250 634 ENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLYCSIT 712 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 712 (947)
.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~-----------------~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~ 156 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRG-----------------MKDKEEVKNEISVMNQLDHANLIQLYDAFE 156 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCS-----------------HHHHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc-----------------cccHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence 568999999999999965 68999999984211 123467899999999999999999999999
Q ss_pred cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe--cCCCCeEEec
Q 002250 713 SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL--DLEWKPRIAD 790 (947)
Q Consensus 713 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll--~~~~~~kl~D 790 (947)
.++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|
T Consensus 157 ~~~~~~lv~E~~~~~~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~D 232 (373)
T 2x4f_A 157 SKNDIVLVMEYVDGGELFDRIIDE-SYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIID 232 (373)
T ss_dssp CSSEEEEEEECCTTCEEHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECC
T ss_pred ECCEEEEEEeCCCCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEe
Confidence 999999999999999999998763 346899999999999999999999 8999999999999999 5678899999
Q ss_pred cccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhcccc
Q 002250 791 FGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKMDSR 870 (947)
Q Consensus 791 fG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 870 (947)
||+++....... .....||+.|+|||++....++.++|||||||++|||++|+.||... +..+.........
T Consensus 233 FG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~-----~~~~~~~~i~~~~ 304 (373)
T 2x4f_A 233 FGLARRYKPREK---LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD-----NDAETLNNILACR 304 (373)
T ss_dssp CSSCEECCTTCB---CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTC
T ss_pred CCCceecCCccc---cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhcc
Confidence 999987654432 22346999999999999888999999999999999999999999532 1122222111111
Q ss_pred ccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 871 DSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 871 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
... . .+........+.+++.+|++.||.+|||+.|+++
T Consensus 305 ~~~---~----~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 305 WDL---E----DEEFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp CCS---C----SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCC---C----hhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 110 0 1111223456889999999999999999999987
No 161
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=3.2e-38 Score=338.96 Aligned_cols=249 Identities=25% Similarity=0.330 Sum_probs=181.3
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ........+.+|+.++++++||||++
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~--------------~~~~~~~~~~~e~~~l~~l~h~~i~~ 77 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVL--------------AKSDMQGRIEREISYLRLLRHPHIIK 77 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-------------------CHHHHHHHHHHHHHCCCTTBCC
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhc--------------chHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 468999999999999999999954 789999999843221 11234567889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+ ++++.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||++++++.+
T Consensus 78 ~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~ 151 (275)
T 2eue_A 78 LYDVIKSKDEIIMVIEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNV 151 (275)
T ss_dssp EEEEEECSSCEEEEEECC-CEEHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCE
T ss_pred EEEEEecCCeEEEEehhc-CCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCE
Confidence 999999999999999999 77888888763 45899999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||++........ .....||+.|+|||++.+..+ +.++||||+|+++|||++|+.||... ........
T Consensus 152 kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~ 223 (275)
T 2eue_A 152 KIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPVLFKN 223 (275)
T ss_dssp EECCSSCC------------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEeecccceeccCccc---ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCC-----CHHHHHHH
Confidence 9999999976554332 223468999999999987765 68999999999999999999998532 22222111
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
...... ..+......+.+++.+|++.||++|||+.|+++
T Consensus 224 ~~~~~~-----------~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 224 ISNGVY-----------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHTCC-----------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHhCCC-----------CCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 111111 112223456788999999999999999999985
No 162
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=1.9e-38 Score=350.63 Aligned_cols=255 Identities=24% Similarity=0.268 Sum_probs=201.3
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-ccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHV 702 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~ 702 (947)
..+.++|++.+.||+|+||+||+|+.+ +++.||||++... .....+|++++.++ +||
T Consensus 18 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~---------------------~~~~~~E~~~l~~~~~hp 76 (342)
T 2qr7_A 18 IQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS---------------------KRDPTEEIEILLRYGQHP 76 (342)
T ss_dssp -CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT---------------------TCCCHHHHHHHHHHTTST
T ss_pred cCccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc---------------------cCChHHHHHHHHHhcCCC
Confidence 345688999999999999999999976 6899999998421 12345788999888 799
Q ss_pred ccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL 782 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 782 (947)
||+++++++.+++..|+||||+++|+|.+++... ..+++.....++.||+.||+||| +.+|+||||||+||++.+
T Consensus 77 ~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~ 151 (342)
T 2qr7_A 77 NIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVD 151 (342)
T ss_dssp TBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESS
T ss_pred CcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEec
Confidence 9999999999999999999999999999999864 45899999999999999999999 889999999999999854
Q ss_pred C----CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 783 E----WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 783 ~----~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
+ +.+||+|||+++....... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||..... ..
T Consensus 152 ~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~ 227 (342)
T 2qr7_A 152 ESGNPESIRICDFGFAKQLRAENG--LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD--DT 227 (342)
T ss_dssp SSCSGGGEEECCCTTCEECBCTTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT--SC
T ss_pred CCCCcCeEEEEECCCcccCcCCCC--ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc--CC
Confidence 3 3499999999987654322 12245789999999999888899999999999999999999999964321 12
Q ss_pred HHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 859 IVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
..+............ . ..........+.+++.+|++.||++|||+.|++++
T Consensus 228 ~~~~~~~i~~~~~~~----~---~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 228 PEEILARIGSGKFSL----S---GGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp HHHHHHHHHHCCCCC----C---STTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred HHHHHHHHccCCccc----C---ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 222222221111110 0 11122334567889999999999999999999853
No 163
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=348.94 Aligned_cols=253 Identities=22% Similarity=0.284 Sum_probs=204.7
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.++.++|++.+.||+|+||+||+|+.. +++.||||++......... .........+.+|+.++++++|||
T Consensus 20 ~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~---------~~~~~~~~~~~~E~~~l~~l~h~~ 90 (335)
T 3dls_A 20 GEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDC---------WIEDPKLGKVTLEIAILSRVEHAN 90 (335)
T ss_dssp THHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTS---------EEEETTTEEEEHHHHHHTTCCCTT
T ss_pred cccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhccccc---------ccchHHHHHHHHHHHHHHhCCCCC
Confidence 356789999999999999999999954 7899999999543221110 001123456788999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCC-ChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNG-SLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL 782 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 782 (947)
|+++++++..++..++||||+.+| +|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 91 Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~~--~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~ 165 (335)
T 3dls_A 91 IIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRH--PRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAE 165 (335)
T ss_dssp BCCEEEEEECSSEEEEEEECCTTSCBHHHHHHTC--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECT
T ss_pred EeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcC
Confidence 999999999999999999999777 999999864 35899999999999999999999 889999999999999999
Q ss_pred CCCeEEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 783 EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
++.+||+|||+++....... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||.....
T Consensus 166 ~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------- 235 (335)
T 3dls_A 166 DFTIKLIDFGSAAYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE------- 235 (335)
T ss_dssp TSCEEECCCTTCEECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG-------
T ss_pred CCcEEEeecccceECCCCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH-------
Confidence 99999999999987654432 224579999999999988776 7899999999999999999999843100
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.... .. ..+......+.+++.+|++.||++|||+.|++++
T Consensus 236 ----~~~~------~~-----~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 236 ----TVEA------AI-----HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp ----GTTT------CC-----CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ----HHhh------cc-----CCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0000 00 0111133568899999999999999999999986
No 164
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=4.9e-38 Score=338.32 Aligned_cols=250 Identities=26% Similarity=0.357 Sum_probs=200.9
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|... +++.||||++... ..........+.+|+.++++++||||++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------------~~~~~~~~~~~~~e~~~l~~l~h~~i~~ 73 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKA--------------QLEKAGVEHQLRREVEIQSHLRHPNILR 73 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH--------------HHHHHTCHHHHHHHHHHHTTCCCTTBCC
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEecc--------------ccchhhHHHHHHHHHHHHHcCCCCCCcc
Confidence 478999999999999999999966 6789999998311 1112234567889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+.+..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 74 ~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~ 148 (279)
T 3fdn_A 74 LYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGEL 148 (279)
T ss_dssp EEEEEECSSEEEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCE
T ss_pred hhheEecCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCE
Confidence 999999999999999999999999999864 35889999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
+|+|||++....... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||... .........
T Consensus 149 ~l~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~ 219 (279)
T 3fdn_A 149 KIADFGWSVHAPSSR----RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN-----TYQETYKRI 219 (279)
T ss_dssp EECSCCEESCC------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHH
T ss_pred EEEeccccccCCccc----ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC-----cHHHHHHHH
Confidence 999999986543322 22456899999999999988999999999999999999999998532 122211111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
..... ..+...+..+.+++.+|++.||++|||+.|++++
T Consensus 220 ~~~~~-----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 220 SRVEF-----------TFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp HHTCC-----------CCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred HhCCC-----------CCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 11111 1112234567889999999999999999999964
No 165
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=3e-38 Score=347.23 Aligned_cols=254 Identities=23% Similarity=0.271 Sum_probs=183.4
Q ss_pred hccCC---cccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-ccc
Q 002250 629 DAVKP---ENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVN 703 (947)
Q Consensus 629 ~~~~~---~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n 703 (947)
++|++ .+.||+|+||+||+|... +++.||||++.. .....+.+|+.+++++. |||
T Consensus 8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~--------------------~~~~~~~~e~~~l~~l~~h~n 67 (325)
T 3kn6_A 8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISK--------------------RMEANTQKEITALKLCEGHPN 67 (325)
T ss_dssp HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEG--------------------GGHHHHHHHHHHHHHTTTCTT
T ss_pred hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEECh--------------------hhhhhHHHHHHHHHHhcCCCC
Confidence 44544 378999999999999975 689999999831 23456788999999997 999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++.++...|+||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 68 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~ 142 (325)
T 3kn6_A 68 IVKLHEVFHDQLHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDE 142 (325)
T ss_dssp BCCEEEEEECSSEEEEEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC-
T ss_pred eeEEEEEEEcCCEEEEEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecC
Confidence 999999999999999999999999999999874 45899999999999999999999 8999999999999999876
Q ss_pred C---CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC--Cccc
Q 002250 784 W---KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFG--DSKD 858 (947)
Q Consensus 784 ~---~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~--~~~~ 858 (947)
+ .+||+|||+++....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....
T Consensus 143 ~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~ 220 (325)
T 3kn6_A 143 NDNLEIKIIDFGFARLKPPDNQ--PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTS 220 (325)
T ss_dssp ---CEEEECCCTTCEECCC------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCC
T ss_pred CCcccEEEeccccceecCCCCC--cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 5 799999999986654322 12244689999999999999999999999999999999999999964321 1112
Q ss_pred HHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 859 IVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
..+............ ..+........+.+++.+|++.||++|||+.|++++
T Consensus 221 ~~~~~~~i~~~~~~~-------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 271 (325)
T 3kn6_A 221 AVEIMKKIKKGDFSF-------EGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN 271 (325)
T ss_dssp HHHHHHHHTTTCCCC-------CSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred HHHHHHHHHcCCCCC-------CcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence 222222221111110 011122345678899999999999999999999854
No 166
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=6.9e-38 Score=347.87 Aligned_cols=270 Identities=24% Similarity=0.304 Sum_probs=213.0
Q ss_pred HHHhhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhh--cccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSA--VRHV 702 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~ 702 (947)
+.+.++|++.+.||+|+||.||+|+.. ++.||||++.. .....+.+|++++.. ++||
T Consensus 38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~--------------------~~~~~~~~e~~~~~~~~l~h~ 96 (342)
T 1b6c_B 38 RTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSS--------------------REERSWFREAEIYQTVMLRHE 96 (342)
T ss_dssp HHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECG--------------------GGHHHHHHHHHHHHHSCCCCT
T ss_pred ccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCc--------------------hhHHHHHHHHHHHHHhhcCCC
Confidence 566789999999999999999999985 89999999831 223567788888887 7999
Q ss_pred ccceEEEEEecCC----ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEeccC
Q 002250 703 NVVKLYCSITSED----SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHG-----FDRPVIHRDV 773 (947)
Q Consensus 703 niv~l~~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~-----~~~~ivH~Dl 773 (947)
||+++++++.... ..++||||+++|+|.+++.. ..+++..+..++.|++.||+|||.. .+.+|+||||
T Consensus 97 ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dl 173 (342)
T 1b6c_B 97 NILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDL 173 (342)
T ss_dssp TBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCC
T ss_pred cEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCC
Confidence 9999999998876 78999999999999999976 3589999999999999999999932 1468999999
Q ss_pred CCCCeEecCCCCeEEeccccceecccCCCCc--ceecccccccccCccccccCC------CCCccchHHHHHHHHHHHhC
Q 002250 774 KSSNILLDLEWKPRIADFGLAKIVQTGEAGD--LTHVIAGTHGYIAPEYAYTCK------INEKSDVYSFGVVLMELVTG 845 (947)
Q Consensus 774 kp~NIll~~~~~~kl~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~slGv~l~elltg 845 (947)
||+||+++.++.+||+|||++.......... ......||+.|+|||++.+.. ++.++||||||+++|||++|
T Consensus 174 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg 253 (342)
T 1b6c_B 174 KSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR 253 (342)
T ss_dssp SGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhc
Confidence 9999999999999999999998765443211 123446899999999987652 33689999999999999999
Q ss_pred ----------CCCCCCCCCCcccHHHHHHhhccccccccccccCCCCc--cCHHHHHHHHHHHHhccCCCCCCCCCHHHH
Q 002250 846 ----------KRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISE--ILKEDALKVLRIAIHCTNKLPAFRPSMRVV 913 (947)
Q Consensus 846 ----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev 913 (947)
..||............+....... ...+.++. ...+.+..+.+++.+||+.||++|||+.|+
T Consensus 254 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i 327 (342)
T 1b6c_B 254 CSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ------KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRI 327 (342)
T ss_dssp BCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS------CCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred cCcCCcccccccCccccCcCcccHHHHHHHHHHH------HhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHH
Confidence 678765443333333333222111 11122221 234667789999999999999999999999
Q ss_pred HHHhhccCCCC
Q 002250 914 VQMLEEAEPCS 924 (947)
Q Consensus 914 ~~~L~~~~~~~ 924 (947)
+++|+++....
T Consensus 328 ~~~L~~i~~~~ 338 (342)
T 1b6c_B 328 KKTLSQLSQQE 338 (342)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999876443
No 167
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=5.5e-39 Score=351.43 Aligned_cols=262 Identities=24% Similarity=0.348 Sum_probs=197.0
Q ss_pred HhhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|+. .+++.||||++..... ........+.+|+.++++++||||+
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------------~~~~~~~~~~~E~~~l~~l~hp~iv 75 (311)
T 3ork_A 10 LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLA--------------RDPSFYLRFRREAQNAAALNHPAIV 75 (311)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTT--------------TSHHHHHHHHHHHTTCCCCCCTTBC
T ss_pred ecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCcccc--------------CCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 457899999999999999999996 5789999999843211 1112235688999999999999999
Q ss_pred eEEEEEecCCcc----EEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 706 KLYCSITSEDSN----LLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 706 ~l~~~~~~~~~~----~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
++++++...... |+||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 76 ~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~ 150 (311)
T 3ork_A 76 AVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMIS 150 (311)
T ss_dssp CEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE
T ss_pred eEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEc
Confidence 999999876654 9999999999999999864 35899999999999999999999 88999999999999999
Q ss_pred CCCCeEEeccccceecccCCCC-cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 782 LEWKPRIADFGLAKIVQTGEAG-DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
.++.+||+|||+++........ .......||+.|+|||++.+..++.++||||||+++|||++|+.||... ...
T Consensus 151 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-----~~~ 225 (311)
T 3ork_A 151 ATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-----SPV 225 (311)
T ss_dssp TTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHH
T ss_pred CCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-----ChH
Confidence 9999999999999866543221 1223456899999999999999999999999999999999999999532 222
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHH-HHhhc
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVV-QMLEE 919 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~-~~L~~ 919 (947)
.............. .......+..+.+++.+|++.||++||++.+++ +.+.+
T Consensus 226 ~~~~~~~~~~~~~~-------~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 278 (311)
T 3ork_A 226 SVAYQHVREDPIPP-------SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR 278 (311)
T ss_dssp HHHHHHHHCCCCCH-------HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCc-------ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHH
Confidence 22222221111100 011122345688999999999999999766655 44444
No 168
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=7.2e-39 Score=361.03 Aligned_cols=253 Identities=22% Similarity=0.315 Sum_probs=195.8
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc--ccccce
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR--HVNVVK 706 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~ 706 (947)
+.|++.+.||+|+||+||+|...+++.||||++.... ........+.+|+.++++++ ||||++
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~---------------~~~~~~~~~~~Ei~~l~~l~~~~~~iv~ 120 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEE---------------ADNQTLDSYRNEIAYLNKLQQHSDKIIR 120 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTT---------------CCHHHHHHHHHHHHHHHHHTTTCTTBCC
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEeccc---------------ccHHHHHHHHHHHHHHHHcccCCCeEEE
Confidence 4589999999999999999998889999999984221 11123467899999999997 599999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..|+||| +.+++|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+|||++ ++.+
T Consensus 121 ~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~ 193 (390)
T 2zmd_A 121 LYDYEITDQYIYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGML 193 (390)
T ss_dssp EEEEEECSSEEEEEEE-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCE
T ss_pred EEEEEecCCEEEEEEe-cCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeE
Confidence 9999999999999999 5688999999874 36788889999999999999999 89999999999999995 5899
Q ss_pred EEeccccceecccCCCCcceecccccccccCcccccc-----------CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-----------CKINEKSDVYSFGVVLMELVTGKRPIVPEFGD 855 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~ 855 (947)
||+|||+++..............+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....
T Consensus 194 kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~- 272 (390)
T 2zmd_A 194 KLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN- 272 (390)
T ss_dssp EECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC-
T ss_pred EEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH-
Confidence 9999999987654433222334579999999999865 3688899999999999999999999953321
Q ss_pred cccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 856 SKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.............. ...+... ...+.+++.+||+.||++|||+.|++++
T Consensus 273 ---~~~~~~~~~~~~~~------~~~~~~~---~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 273 ---QISKLHAIIDPNHE------IEFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp ---HHHHHHHHHCTTSC------CCCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ---HHHHHHHHhCcccc------CCCCccc---hHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 11111111111111 1111111 3467889999999999999999999864
No 169
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=3.3e-38 Score=366.38 Aligned_cols=256 Identities=25% Similarity=0.279 Sum_probs=207.8
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||.||+|+.. +|+.||||++... ..........+.+|+.++++++||||+++
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~--------------~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l 249 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKK--------------RIKKRKGEAMALNEKQILEKVNSRFVVSL 249 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHHHCCCTTBCCE
T ss_pred cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhH--------------hhhhhHHHHHHHHHHHHHHHcCCCCEeeE
Confidence 67888999999999999999975 7999999998311 11122345678899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++.+++..|+||||+++|+|.+++...+...+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+|
T Consensus 250 ~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vK 326 (576)
T 2acx_A 250 AYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIR 326 (576)
T ss_dssp EEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEE
T ss_pred EEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeE
Confidence 999999999999999999999999998766666999999999999999999999 88999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhc
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKM 867 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~ 867 (947)
|+|||+|+....... ....+||+.|+|||++.+..++.++|||||||++|||++|+.||....... ..........
T Consensus 327 L~DFGla~~~~~~~~---~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~-~~~~i~~~i~ 402 (576)
T 2acx_A 327 ISDLGLAVHVPEGQT---IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEVERLVK 402 (576)
T ss_dssp ECCCTTCEECCTTCC---EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC-CHHHHHHHHH
T ss_pred EEecccceecccCcc---ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch-hHHHHHHHhh
Confidence 999999987654332 234579999999999999889999999999999999999999996543211 1111111111
Q ss_pred cccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHH
Q 002250 868 DSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP-----SMRVVVQM 916 (947)
Q Consensus 868 ~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~ev~~~ 916 (947)
.... .++......+.+++.+|++.||++|| ++.|++++
T Consensus 403 ~~~~-----------~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 403 EVPE-----------EYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp HCCC-----------CCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred cccc-----------cCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 1111 11222345688899999999999999 77888754
No 170
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=8.5e-39 Score=344.07 Aligned_cols=252 Identities=27% Similarity=0.383 Sum_probs=199.8
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|++.+.||+|+||+||+|+.. |+.||||++.. ....+.+.+|++++++++||||+++
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~-------------------~~~~~~~~~E~~~l~~l~h~~iv~~ 79 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKN-------------------DATAQAFLAEASVMTQLRHSNLVQL 79 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCC-------------------CC--HHHHHTHHHHTTCCCTTBCCE
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecc-------------------hhHHHHHHHHHHHHHhCCCCCEeeE
Confidence 368999999999999999999886 88999999831 1234678899999999999999999
Q ss_pred EEEEecC-CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 708 YCSITSE-DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 708 ~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
++++... +..++||||+++++|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~ 156 (278)
T 1byg_A 80 LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVA 156 (278)
T ss_dssp EEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCE
T ss_pred EEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcE
Confidence 9997654 57899999999999999998755445889999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||++....... ....+++.|+|||++.+..++.++||||||+++|||++ |+.||... ...+....+.
T Consensus 157 ~l~Dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--~~~~~~~~~~- 228 (278)
T 1byg_A 157 KVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--PLKDVVPRVE- 228 (278)
T ss_dssp EECCCCC-----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--CGGGHHHHHT-
T ss_pred EEeeccccccccccc-----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHh-
Confidence 999999997554322 12357889999999998899999999999999999998 99998532 1222222111
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
.. .....+...+..+.+++.+||+.||++|||+.|+++.|+++..
T Consensus 229 ---~~---------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~ 273 (278)
T 1byg_A 229 ---KG---------YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 273 (278)
T ss_dssp ---TT---------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---cC---------CCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence 10 0111223345678899999999999999999999999998643
No 171
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.2e-38 Score=349.28 Aligned_cols=260 Identities=23% Similarity=0.335 Sum_probs=196.4
Q ss_pred hccCCcccccccCceeEEEEEeC----CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN----SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
++|++.+.||+|+||.||+|... .++.||||++.... ......+.+.+|+.++++++||||
T Consensus 34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~e~~~l~~l~h~~i 98 (313)
T 3brb_A 34 NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDN---------------SSQREIEEFLSEAACMKDFSHPNV 98 (313)
T ss_dssp GGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---C---------------CCHHHHHHHHHHHHHHHTCCCTTB
T ss_pred HHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccc---------------cchhHHHHHHHHHHHHhcCCCCCe
Confidence 67889999999999999999854 34589999984221 111234668899999999999999
Q ss_pred ceEEEEEecCCc-----cEEEEeccCCCChHHHhhhc----CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCC
Q 002250 705 VKLYCSITSEDS-----NLLVYEYLPNGSLWDRLHTC----HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKS 775 (947)
Q Consensus 705 v~l~~~~~~~~~-----~~lv~e~~~~gsL~~~l~~~----~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp 775 (947)
+++++++...+. .++||||+++|+|.+++... ....+++..++.++.|++.||+||| +.+|+||||||
T Consensus 99 v~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp 175 (313)
T 3brb_A 99 IRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAA 175 (313)
T ss_dssp CCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSG
T ss_pred eeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCc
Confidence 999999987654 49999999999999998532 3456899999999999999999999 89999999999
Q ss_pred CCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCC
Q 002250 776 SNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFG 854 (947)
Q Consensus 776 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~ 854 (947)
+||+++.++.+||+|||+++...............+++.|+|||.+.+..++.++||||||+++|||++ |..||...
T Consensus 176 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-- 253 (313)
T 3brb_A 176 RNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGV-- 253 (313)
T ss_dssp GGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--
T ss_pred ceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccC--
Confidence 999999999999999999987654433333334567889999999999999999999999999999999 88888532
Q ss_pred CcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 855 DSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
............ .....+...+..+.+++.+|++.||++|||+.+++++|+++.
T Consensus 254 ~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~ 307 (313)
T 3brb_A 254 QNHEMYDYLLHG-------------HRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLL 307 (313)
T ss_dssp CGGGHHHHHHTT-------------CCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC-------------CCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 122222221111 111122334457889999999999999999999999998754
No 172
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-38 Score=344.86 Aligned_cols=256 Identities=21% Similarity=0.290 Sum_probs=204.7
Q ss_pred hccCCcc-cccccCceeEEEEEeC---CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 629 DAVKPEN-LIGKGGSGNVYKVVLN---SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 629 ~~~~~~~-~iG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
++|.+.+ .||+|+||.||+|... +++.||||++.... .....+.+.+|++++++++||||
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~~i 72 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT----------------EKADTEEMMREAQIMHQLDNPYI 72 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC----------------CHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc----------------chhHHHHHHHHHHHHHhCCCCCE
Confidence 4566665 8999999999999854 57889999984221 11234678899999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++++ ..+..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 73 ~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~ 147 (287)
T 1u59_A 73 VRLIGVC-QAEALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRH 147 (287)
T ss_dssp CCEEEEE-ESSSEEEEEECCTTEEHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETT
T ss_pred eEEEEEe-cCCCcEEEEEeCCCCCHHHHHHhC-CccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCC
Confidence 9999999 456789999999999999999753 446899999999999999999999 88999999999999999999
Q ss_pred CeEEeccccceecccCCCC-cceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAG-DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
.+||+|||++......... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||.... .......
T Consensus 148 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~ 225 (287)
T 1u59_A 148 YAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAF 225 (287)
T ss_dssp EEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHHHHH
T ss_pred CEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HHHHHHH
Confidence 9999999999876543321 11223356889999999988889999999999999999999 999985431 2222222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
+.. . .....+...+..+.+++.+||+.||++||++.+++++|+++
T Consensus 226 i~~---~----------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~ 270 (287)
T 1u59_A 226 IEQ---G----------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 270 (287)
T ss_dssp HHT---T----------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred Hhc---C----------CcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 111 1 11122234456788999999999999999999999999875
No 173
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.6e-37 Score=333.96 Aligned_cols=252 Identities=21% Similarity=0.262 Sum_probs=203.3
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
.+.++|++.+.||+|+||+||+|... ++..||+|++.. ......+.+.+|++++++++||||
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~-----------------~~~~~~~~~~~E~~~l~~l~h~~i 68 (277)
T 3f3z_A 6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPK-----------------YFVEDVDRFKQEIEIMKSLDHPNI 68 (277)
T ss_dssp CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEG-----------------GGCSCHHHHHHHHHHHHTCCCTTB
T ss_pred hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehh-----------------hccchHHHHHHHHHHHHhCCCCCE
Confidence 45688999999999999999999966 578999999832 112345778999999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe---c
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL---D 781 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll---~ 781 (947)
+++++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||++ +
T Consensus 69 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~ 143 (277)
T 3f3z_A 69 IRLYETFEDNTDIYLVMELCTGGELFERVVHK--RVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDS 143 (277)
T ss_dssp CCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSS
T ss_pred eeEEEEEecCCeEEEEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCC
Confidence 99999999999999999999999999999864 35899999999999999999999 8999999999999999 7
Q ss_pred CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 782 LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
.++.+||+|||++........ .....||+.|+|||++.+ .++.++||||||+++|||++|+.||.... ..+
T Consensus 144 ~~~~~~l~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~ 214 (277)
T 3f3z_A 144 PDSPLKLIDFGLAARFKPGKM---MRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPT-----DSE 214 (277)
T ss_dssp TTCCEEECCCTTCEECCTTSC---BCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSS-----HHH
T ss_pred CCCcEEEEecccceeccCccc---hhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCC-----HHH
Confidence 889999999999987654432 224468999999998865 48999999999999999999999985321 111
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
............. .......+..+.+++.+|++.||++|||+.|+++
T Consensus 215 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 215 VMLKIREGTFTFP-------EKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHHHHHHCCCCCC-------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHhCCCCCC-------chhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 1111111111100 0000123456889999999999999999999985
No 174
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.1e-37 Score=336.52 Aligned_cols=255 Identities=24% Similarity=0.298 Sum_probs=203.8
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|... +++.||+|++.... ........+.+|+.++++++||||+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~e~~~l~~l~h~~i~ 68 (284)
T 3kk8_A 4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKK---------------LSARDFQKLEREARICRKLQHPNIV 68 (284)
T ss_dssp TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG---------------CCHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeeccc---------------CCHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3578999999999999999999965 68999999984211 1112346788999999999999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 69 ~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~ 143 (284)
T 3kk8_A 69 RLHDSIQEESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAK 143 (284)
T ss_dssp CEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSST
T ss_pred eEEEEEEcCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCC
Confidence 9999999999999999999999999998764 45899999999999999999999 889999999999999986655
Q ss_pred ---eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Q 002250 786 ---PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 786 ---~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 862 (947)
+||+|||.+........ .....||+.|+|||++.+..++.++||||+|+++|||++|+.||... ...+.
T Consensus 144 ~~~~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~-----~~~~~ 215 (284)
T 3kk8_A 144 GAAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-----DQHRL 215 (284)
T ss_dssp TCCEEECCCTTCEECCSSCB---CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHH
T ss_pred CCcEEEeeceeeEEcccCcc---ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC-----chhHH
Confidence 99999999986654332 22356899999999999999999999999999999999999998532 11111
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
........... . .......+..+.+++.+|++.||++|||+.|++++
T Consensus 216 ~~~~~~~~~~~---~----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 216 YAQIKAGAYDY---P----SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp HHHHHHTCCCC---C----TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred HHHHHhccccC---C----chhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 11111111110 0 01112234568899999999999999999999873
No 175
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=4.2e-38 Score=365.04 Aligned_cols=251 Identities=23% Similarity=0.283 Sum_probs=203.5
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
+.|+..+.||+|+||.||+|+.+ +|+.||||++... ..........+.+|+.++++++||||+++
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~--------------~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l 250 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKK--------------RLKKRKGYQGAMVEKKILAKVHSRFIVSL 250 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHHHCCCTTBCCE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhH--------------HhhhhHHHHHHHHHHHHHHhcCCCCEeeE
Confidence 67888899999999999999976 6999999998311 11122445678899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcC--CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCH--KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++..++..|+||||+++|+|.+++.... ...+++.....++.||+.||+||| +.+|+||||||+||+++.++.
T Consensus 251 ~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~ 327 (543)
T 3c4z_A 251 AYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGN 327 (543)
T ss_dssp EEEEECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSC
T ss_pred EEEEeeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCC
Confidence 999999999999999999999999997643 456899999999999999999999 899999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+|||+++........ ....+||+.|+|||++.+..++.++|||||||++|||++|+.||...... .........
T Consensus 328 vkL~DFGla~~~~~~~~~--~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~-~~~~~~~~~ 404 (543)
T 3c4z_A 328 VRISDLGLAVELKAGQTK--TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK-VENKELKQR 404 (543)
T ss_dssp EEECCCTTCEECCTTCCC--BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC-CCHHHHHHH
T ss_pred EEEeecceeeeccCCCcc--cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc-hhHHHHHHH
Confidence 999999999876543321 22457999999999999989999999999999999999999999654221 112222221
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSM 910 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 910 (947)
...... .++...+..+.+++.+|++.||++||++
T Consensus 405 i~~~~~-----------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 405 VLEQAV-----------TYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp HHHCCC-----------CCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred Hhhccc-----------CCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 111111 1122334567889999999999999975
No 176
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-39 Score=356.07 Aligned_cols=262 Identities=17% Similarity=0.173 Sum_probs=206.3
Q ss_pred hccCCcccccccCceeEEEEEeCC---------CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNS---------GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV 699 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 699 (947)
++|++.+.||+|+||.||+|+... ++.||||++. ....+.+|+++++++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~----------------------~~~~~~~E~~~l~~l 99 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDA----------------------KDGRLFNEQNFFQRA 99 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEE----------------------TTSTHHHHHHHHHHH
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEec----------------------ccchHHHHHHHHHHh
Confidence 689999999999999999999763 7899999983 114688999999999
Q ss_pred cccccce---------------EEEEEec-CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcC
Q 002250 700 RHVNVVK---------------LYCSITS-EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHG 763 (947)
Q Consensus 700 ~h~niv~---------------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~ 763 (947)
+||||++ +++++.. +...++||||+ +++|.+++.......+++..+..++.|++.||+|||
T Consensus 100 ~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH-- 176 (352)
T 2jii_A 100 AKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH-- 176 (352)
T ss_dssp CCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred cccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH--
Confidence 9999998 6677766 67789999999 999999999765567999999999999999999999
Q ss_pred CCCCeEeccCCCCCeEecCCC--CeEEeccccceecccCCCC-----cceecccccccccCccccccCCCCCccchHHHH
Q 002250 764 FDRPVIHRDVKSSNILLDLEW--KPRIADFGLAKIVQTGEAG-----DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFG 836 (947)
Q Consensus 764 ~~~~ivH~Dlkp~NIll~~~~--~~kl~DfG~a~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG 836 (947)
+.+|+||||||+||+++.++ .+||+|||+++........ .......||+.|+|||++.+..++.++||||||
T Consensus 177 -~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG 255 (352)
T 2jii_A 177 -ENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLG 255 (352)
T ss_dssp -HTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHH
T ss_pred -hCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHH
Confidence 88999999999999999998 8999999999866543221 111234789999999999998999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 837 VVLMELVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 837 v~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+++|||++|+.||.........+............. ..+.... ....+..+.+++.+|++.||++|||+.++++.
T Consensus 256 ~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~ 330 (352)
T 2jii_A 256 YCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGP---FVGPCGH--WIRPSETLQKYLKVVMALTYEEKPPYAMLRNN 330 (352)
T ss_dssp HHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCC---EECTTSC--EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred HHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhh---hhhhccc--cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHH
Confidence 999999999999965433333333332222111111 1111100 01123568889999999999999999999999
Q ss_pred hhccC
Q 002250 917 LEEAE 921 (947)
Q Consensus 917 L~~~~ 921 (947)
|+++.
T Consensus 331 L~~~~ 335 (352)
T 2jii_A 331 LEALL 335 (352)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 177
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.1e-38 Score=353.27 Aligned_cols=207 Identities=26% Similarity=0.278 Sum_probs=178.8
Q ss_pred ccccccH-HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHH
Q 002250 618 RVLSFSE-KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVAT 695 (947)
Q Consensus 618 ~~~~~~~-~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~ 695 (947)
..+++.+ ..+.++|++.+.||+|+||+||+|+.. +++.||||++.. .......+..|+.+
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~------------------~~~~~~~~~~e~~~ 84 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN------------------IKKYTRSAKIEADI 84 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS------------------CHHHHHHHHHHHHH
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc------------------chhhhhhhHHHHHH
Confidence 3344444 445688999999999999999999964 789999999831 11233567789999
Q ss_pred Hhhcc-----ccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEe
Q 002250 696 LSAVR-----HVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIH 770 (947)
Q Consensus 696 l~~l~-----h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH 770 (947)
++.+. ||||+++++++...+..++||||+ +++|.+++.......+++..+..++.|++.||+||| +.+|+|
T Consensus 85 l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH 160 (360)
T 3llt_A 85 LKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTH 160 (360)
T ss_dssp HHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEEC
T ss_pred HHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeee
Confidence 99996 999999999999999999999999 999999999866667999999999999999999999 899999
Q ss_pred ccCCCCCeEecC-------------------------CCCeEEeccccceecccCCCCcceecccccccccCccccccCC
Q 002250 771 RDVKSSNILLDL-------------------------EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK 825 (947)
Q Consensus 771 ~Dlkp~NIll~~-------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~ 825 (947)
|||||+|||++. ++.+||+|||+|+...... ....||+.|+|||++.+..
T Consensus 161 rDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~ 235 (360)
T 3llt_A 161 TDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLG 235 (360)
T ss_dssp SCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCC
T ss_pred CCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCC
Confidence 999999999975 7899999999998654322 2457899999999999999
Q ss_pred CCCccchHHHHHHHHHHHhCCCCCCC
Q 002250 826 INEKSDVYSFGVVLMELVTGKRPIVP 851 (947)
Q Consensus 826 ~~~~~Dv~slGv~l~elltg~~p~~~ 851 (947)
++.++|||||||++|||++|+.||..
T Consensus 236 ~~~~~DiwslG~il~ell~g~~pf~~ 261 (360)
T 3llt_A 236 WDVSSDMWSFGCVLAELYTGSLLFRT 261 (360)
T ss_dssp CCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCCccchHHHHHHHHHHHHCCCCCCC
Confidence 99999999999999999999999954
No 178
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.4e-38 Score=346.15 Aligned_cols=260 Identities=27% Similarity=0.328 Sum_probs=200.3
Q ss_pred hccCCcccccccCceeEEEEEeCC----CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNS----GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
..|++.+.||+|+||+||+|+..+ ...||||.+... ......+.+.+|+.++++++||||
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~----------------~~~~~~~~~~~E~~~l~~l~h~~i 88 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI----------------TDIGEVSQFLTEGIIMKDFSHPNV 88 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC----------------CSHHHHHHHHHHHHHHHTCCCTTB
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC----------------CCHHHHHHHHHHHHHHHhCCCCCE
Confidence 468888999999999999999642 235899988321 111234678899999999999999
Q ss_pred ceEEEEEe-cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 705 VKLYCSIT-SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 705 v~l~~~~~-~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
+++++++. .++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 89 v~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~ 164 (298)
T 3f66_A 89 LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEK 164 (298)
T ss_dssp CCCCEEECCSSSCCEEEEECCTTCBHHHHHHCT-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTT
T ss_pred eeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCC
Confidence 99999864 566789999999999999999763 456789999999999999999999 8999999999999999999
Q ss_pred CCeEEeccccceecccCCCC--cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAG--DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
+.+||+|||+++........ .......+|+.|+|||.+.+..++.++||||+|+++|||++|..|+...... .+...
T Consensus 165 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~-~~~~~ 243 (298)
T 3f66_A 165 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-FDITV 243 (298)
T ss_dssp CCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT-TTHHH
T ss_pred CCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH-HHHHH
Confidence 99999999999865433211 1222345788999999999999999999999999999999955544332221 12222
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
.... ... ...+...+..+.+++.+|++.||++|||+.|+++.|+++..
T Consensus 244 ~~~~---~~~----------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~ 291 (298)
T 3f66_A 244 YLLQ---GRR----------LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS 291 (298)
T ss_dssp HHHT---TCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHhc---CCC----------CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 1111 111 11112234568899999999999999999999999998643
No 179
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=3.6e-38 Score=344.91 Aligned_cols=265 Identities=22% Similarity=0.340 Sum_probs=199.9
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|.. .+|+.||||++..... ........+.+|+.++++++||||++
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~--------------~~~~~~~~~~~E~~~l~~l~h~~i~~ 96 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDL--------------MDAKARADCIKEIDLLKQLNHPNVIK 96 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSS--------------CCHHHHHHHHHHHHHHHTCCCTTBCC
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhc--------------cCHHHHHHHHHHHHHHHhCCCCCEee
Confidence 46899999999999999999996 4799999999842110 01123467889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhc--CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTC--HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++..++..++||||+++++|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~ 173 (310)
T 2wqm_A 97 YYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATG 173 (310)
T ss_dssp EEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTS
T ss_pred EEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCC
Confidence 999999999999999999999999999753 3456899999999999999999999 89999999999999999999
Q ss_pred CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVY 864 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~ 864 (947)
.+||+|||++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||...... ......
T Consensus 174 ~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~ 248 (310)
T 2wqm_A 174 VVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCK 248 (310)
T ss_dssp CEEECCC--------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC---HHHHHH
T ss_pred CEEEEeccceeeecCCCc--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh---HHHHHH
Confidence 999999999976543321 122346899999999999989999999999999999999999998643222 222221
Q ss_pred hhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 865 SKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 865 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
........ .. .....+..+.+++.+||+.||++|||+.++++.|+++.+.
T Consensus 249 ~~~~~~~~-------~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~ 298 (310)
T 2wqm_A 249 KIEQCDYP-------PL--PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHAC 298 (310)
T ss_dssp HHHTTCSC-------CC--CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HhhcccCC-------CC--cccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence 11111100 00 0122345688999999999999999999999999987654
No 180
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=1.4e-38 Score=343.00 Aligned_cols=257 Identities=21% Similarity=0.314 Sum_probs=202.0
Q ss_pred hhccCCcccccccCceeEEEEEeCC----CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNS----GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.++|++.+.||+|+||+||+|+... +..||||++.... .....+.+.+|+.++++++|||
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~~ 74 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC----------------TLDNKEKFMSEAVIMKNLDHPH 74 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS----------------CHHHHHHHHHHHHHHHHHCCTT
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc----------------CchHHHHHHHHHHHHHhCCCCC
Confidence 3678899999999999999998542 3369999984211 1123467889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++.+ +..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 75 i~~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~ 149 (281)
T 3cc6_A 75 IVKLIGIIEE-EPTWIIMELYPYGELGHYLERN-KNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASP 149 (281)
T ss_dssp BCCEEEEECS-SSCEEEEECCTTCBHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEET
T ss_pred cceEEEEEcC-CCCEEEEecCCCCCHHHHHHhc-cccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCC
Confidence 9999999875 4568999999999999999763 345899999999999999999999 8999999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
+.+||+|||.+.......... .....+|+.|+|||++.+..++.++||||||+++|||++ |+.||... ...+....
T Consensus 150 ~~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~--~~~~~~~~ 226 (281)
T 3cc6_A 150 ECVKLGDFGLSRYIEDEDYYK-ASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL--ENKDVIGV 226 (281)
T ss_dssp TEEEECCCCGGGCC----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--CGGGHHHH
T ss_pred CcEEeCccCCCcccccccccc-cccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC--ChHHHHHH
Confidence 999999999998665432211 223457889999999998899999999999999999998 99998533 22223222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
...... ...+...+..+.+++.+|++.||++|||+.|++++|+++.
T Consensus 227 ~~~~~~-------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 227 LEKGDR-------------LPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp HHHTCC-------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HhcCCC-------------CCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 211100 1111223456889999999999999999999999998753
No 181
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1e-38 Score=352.09 Aligned_cols=263 Identities=22% Similarity=0.310 Sum_probs=205.4
Q ss_pred hhccCCcccccccCceeEEEEEe------CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL------NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH 701 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~------~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 701 (947)
.++|++.+.||+|+||.||+|+. .+++.||||++.... .......+.+|+.++++++|
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h 92 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC----------------SEQDELDFLMEALIISKFNH 92 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC----------------CHHHHHHHHHHHHHHHHCCC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc----------------chhhHHHHHHHHHHHhhCCC
Confidence 47899999999999999999984 257789999983211 11234578899999999999
Q ss_pred cccceEEEEEecCCccEEEEeccCCCChHHHhhhcCC-----ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCC
Q 002250 702 VNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHK-----IEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSS 776 (947)
Q Consensus 702 ~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~ 776 (947)
|||+++++++..++..++||||+++++|.+++..... ..+++..++.++.|++.||+||| +.+|+||||||+
T Consensus 93 ~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~ 169 (327)
T 2yfx_A 93 QNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAAR 169 (327)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGG
T ss_pred CCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHh
Confidence 9999999999999999999999999999999987532 45889999999999999999999 889999999999
Q ss_pred CeEecC---CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCC
Q 002250 777 NILLDL---EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPE 852 (947)
Q Consensus 777 NIll~~---~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~ 852 (947)
||+++. +..+||+|||+++...............||+.|+|||++.+..++.++||||||+++|||++ |+.||...
T Consensus 170 NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~ 249 (327)
T 2yfx_A 170 NCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK 249 (327)
T ss_dssp GEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred HEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc
Confidence 999984 45699999999976544433333334568899999999998899999999999999999998 88998432
Q ss_pred CCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCC
Q 002250 853 FGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCS 924 (947)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~ 924 (947)
........+.. .. ....+...+..+.+++.+||+.||.+|||+.+++++|+.+...+
T Consensus 250 --~~~~~~~~~~~---~~----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~ 306 (327)
T 2yfx_A 250 --SNQEVLEFVTS---GG----------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 306 (327)
T ss_dssp --CHHHHHHHHHT---TC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred --CHHHHHHHHhc---CC----------CCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence 11222222111 11 01112233456889999999999999999999999999876554
No 182
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=1.5e-38 Score=344.15 Aligned_cols=251 Identities=22% Similarity=0.347 Sum_probs=200.5
Q ss_pred hccCCcccccccCceeEEEEEeC-CC-------cEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SG-------KELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR 700 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 700 (947)
++|++.+.||+|+||+||+|+.. ++ ..||+|++.. ......+.+.+|+.++++++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~-----------------~~~~~~~~~~~E~~~l~~l~ 70 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDK-----------------AHRNYSESFFEAASMMSKLS 70 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECG-----------------GGGGGHHHHHHHHHHHHTSC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhccc-----------------ccHHHHHHHHHHHHHHHhCC
Confidence 67889999999999999999865 33 4799998831 11234567899999999999
Q ss_pred ccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 701 HVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 701 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
||||+++++++..++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 71 h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll 146 (289)
T 4fvq_A 71 HKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKN-KNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILL 146 (289)
T ss_dssp CTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHT-GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEE
T ss_pred CCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEE
Confidence 999999999999999999999999999999999873 345899999999999999999999 8999999999999999
Q ss_pred cCCCC--------eEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCC
Q 002250 781 DLEWK--------PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVP 851 (947)
Q Consensus 781 ~~~~~--------~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~ 851 (947)
+.++. +||+|||.+..... .....||+.|+|||++.+ ..++.++||||||+++|||++|..|+..
T Consensus 147 ~~~~~~~~~~~~~~kl~Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~ 220 (289)
T 4fvq_A 147 IREEDRKTGNPPFIKLSDPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLS 220 (289)
T ss_dssp EECCBGGGTBCCEEEECCCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred ecCCcccccccceeeeccCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcc
Confidence 98887 99999999864422 123468999999999987 6789999999999999999997665533
Q ss_pred CCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 852 EFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
.... ....... ...... +...+..+.+++.+||+.||++|||+.|+++.|+++..
T Consensus 221 ~~~~-~~~~~~~----~~~~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 221 ALDS-QRKLQFY----EDRHQL-----------PAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp TSCH-HHHHHHH----HTTCCC-----------CCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred ccch-HHHHHHh----hccCCC-----------CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 2211 1111111 111110 01112347789999999999999999999999998765
No 183
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-38 Score=344.70 Aligned_cols=259 Identities=24% Similarity=0.333 Sum_probs=203.3
Q ss_pred ccCCcccccccCceeEEEEEeC-CC---cEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 630 AVKPENLIGKGGSGNVYKVVLN-SG---KELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 630 ~~~~~~~iG~G~~g~Vy~~~~~-~~---~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
.|+..+.||+|+||+||+|... ++ ..||+|++... ......+.+.+|+.++++++||||+
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~----------------~~~~~~~~~~~E~~~l~~l~h~~iv 85 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI----------------TEMQQVEAFLREGLLMRGLNHPNVL 85 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC----------------CSHHHHHHHHHHHHHHHTCCCTTBC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeecccc----------------ccHHHHHHHHHHHHHHHhCCCCCee
Confidence 4566789999999999999853 23 37999988321 1112346788999999999999999
Q ss_pred eEEEEEecCCcc-EEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 706 KLYCSITSEDSN-LLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 706 ~l~~~~~~~~~~-~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
++++++..++.. ++||||+++|+|.+++.. ....+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 86 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~ 161 (298)
T 3pls_A 86 ALIGIMLPPEGLPHVLLPYMCHGDLLQFIRS-PQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESF 161 (298)
T ss_dssp CCCEEECCSSSCCEEEECCCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTC
T ss_pred eEEEEEecCCCCcEEEEecccCCCHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCC
Confidence 999999876665 999999999999999986 3456899999999999999999999 88999999999999999999
Q ss_pred CeEEeccccceecccCCC--CcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Q 002250 785 KPRIADFGLAKIVQTGEA--GDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 862 (947)
.+||+|||+++....... ........+|+.|+|||.+.+..++.++||||||+++|||++|..|+.... ...+....
T Consensus 162 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~-~~~~~~~~ 240 (298)
T 3pls_A 162 TVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-DPFDLTHF 240 (298)
T ss_dssp CEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CGGGHHHH
T ss_pred cEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC-CHHHHHHH
Confidence 999999999975543221 112224467899999999999999999999999999999999776654332 22223222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCC
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEP 922 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~ 922 (947)
..... ....+...+..+.+++.+|++.||.+|||+.++++.|+++..
T Consensus 241 ~~~~~-------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~ 287 (298)
T 3pls_A 241 LAQGR-------------RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVS 287 (298)
T ss_dssp HHTTC-------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hhcCC-------------CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 21111 011122234568899999999999999999999999998643
No 184
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=7.3e-38 Score=336.79 Aligned_cols=253 Identities=25% Similarity=0.346 Sum_probs=184.1
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+. .+|+.||||++... ........+.+.+|+.++++++||||++
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~--------------~~~~~~~~~~~~~e~~~l~~l~h~~i~~ 75 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKK--------------AMYKAGMVQRVQNEVKIHCQLKHPSILE 75 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHTTBCCTTBCC
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehh--------------hhhhhhHHHHHHHHHHHHHhCCCCCeEe
Confidence 46799999999999999999996 47999999998311 1112234577899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 76 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~ 151 (278)
T 3cok_A 76 LYNYFEDSNYVYLVLEMCHNGEMNRYLKNR-VKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNI 151 (278)
T ss_dssp EEEEEECSSEEEEEEECCTTEEHHHHHHTC-SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCE
T ss_pred EEEEEccCCeEEEEEecCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCE
Confidence 999999999999999999999999999863 346899999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||.+......... .....||+.|+|||++.+..++.++||||||+++|||++|+.||...... .. ....
T Consensus 152 kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~---~~~~ 224 (278)
T 3cok_A 152 KIADFGLATQLKMPHEK--HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK--NT---LNKV 224 (278)
T ss_dssp EECCCTTCEECC------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------C
T ss_pred EEEeecceeeccCCCCc--ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH--HH---HHHH
Confidence 99999999876433221 12346899999999999888999999999999999999999998543211 00 0000
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.. .+.. .+......+.+++.+|++.||++|||+.+++++
T Consensus 225 ~~--------~~~~---~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 225 VL--------ADYE---MPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp CS--------SCCC---CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hh--------cccC---CccccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence 00 0111 122234567889999999999999999999863
No 185
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=7.6e-38 Score=344.76 Aligned_cols=265 Identities=20% Similarity=0.252 Sum_probs=207.2
Q ss_pred cccccH-HHHhhccCCc-ccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHH
Q 002250 619 VLSFSE-KEIIDAVKPE-NLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVAT 695 (947)
Q Consensus 619 ~~~~~~-~~~~~~~~~~-~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~ 695 (947)
-+.|.. +.+.+.|.+. +.||+|+||+||+|+.. +++.||||++.... ........+.+|+.+
T Consensus 17 n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~e~~~ 81 (327)
T 3lm5_A 17 NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRR---------------RGQDCRAEILHEIAV 81 (327)
T ss_dssp CCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEE---------------TTEECHHHHHHHHHH
T ss_pred hhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhh---------------cchHHHHHHHHHHHH
Confidence 344444 6667788887 89999999999999966 69999999984211 112335678899999
Q ss_pred Hhhcc-ccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCC
Q 002250 696 LSAVR-HVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVK 774 (947)
Q Consensus 696 l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlk 774 (947)
++++. ||||+++++++..++..++||||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+|||||
T Consensus 82 l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dik 158 (327)
T 3lm5_A 82 LELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLK 158 (327)
T ss_dssp HHHTTTCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCC
T ss_pred HHhccCCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCC
Confidence 99994 6999999999999999999999999999999997665667999999999999999999999 8899999999
Q ss_pred CCCeEecC---CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 002250 775 SSNILLDL---EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVP 851 (947)
Q Consensus 775 p~NIll~~---~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~ 851 (947)
|+||+++. ++.+||+|||+++....... .....||+.|+|||++....++.++||||||+++|||++|+.||..
T Consensus 159 p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~ 235 (327)
T 3lm5_A 159 PQNILLSSIYPLGDIKIVDFGMSRKIGHACE---LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVG 235 (327)
T ss_dssp GGGEEESCBTTBCCEEECCGGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred hHHEEEecCCCCCcEEEeeCccccccCCccc---cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 99999997 78999999999987654322 2235799999999999999999999999999999999999999853
Q ss_pred CCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 852 EFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.. ..+........... ...+........+.+++.+|++.||++|||+.|++++
T Consensus 236 ~~-----~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 236 ED-----NQETYLNISQVNVD-------YSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp SS-----HHHHHHHHHHTCCC-------CCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred CC-----chHHHHHHHhcccc-------cCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 21 11111111111110 0111222334568889999999999999999999875
No 186
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=2.3e-38 Score=351.11 Aligned_cols=253 Identities=28% Similarity=0.363 Sum_probs=201.1
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.+.|+..+.||+|+||+||+|+. .+++.||||++..... ......+.+.+|++++++++||||++
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~--------------~~~~~~~~~~~E~~~l~~l~hpniv~ 118 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGK--------------QSNEKWQDIIKEVRFLQKLRHPNTIQ 118 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSS--------------CHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccc--------------cchHHHHHHHHHHHHHHhCCCCCEee
Confidence 46688899999999999999996 5789999999842211 01122356889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||++ |++.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 119 ~~~~~~~~~~~~lv~e~~~-g~l~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~ 193 (348)
T 1u5q_A 119 YRGCYLREHTAWLVMEYCL-GSASDLLEVH-KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLV 193 (348)
T ss_dssp EEEEEEETTEEEEEEECCS-EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEE
T ss_pred EEEEEEECCeEEEEEecCC-CCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCE
Confidence 9999999999999999996 6888888653 346899999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY---TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
||+|||+++..... ....||+.|+|||++. .+.++.++|||||||++|||++|+.||... ......
T Consensus 194 kL~DfG~a~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~-----~~~~~~ 262 (348)
T 1u5q_A 194 KLGDFGSASIMAPA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-----NAMSAL 262 (348)
T ss_dssp EECCCTTCBSSSSB------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHH
T ss_pred EEeeccCceecCCC------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----ChHHHH
Confidence 99999999765432 2347899999999984 567899999999999999999999998532 122222
Q ss_pred HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhc
Q 002250 864 YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEE 919 (947)
Q Consensus 864 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~ 919 (947)
......... .. .....+..+.+++.+||+.||++|||+.+++++---
T Consensus 263 ~~~~~~~~~-------~~--~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~ 309 (348)
T 1u5q_A 263 YHIAQNESP-------AL--QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV 309 (348)
T ss_dssp HHHHHSCCC-------CC--CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHH
T ss_pred HHHHhcCCC-------CC--CCCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhh
Confidence 222111110 00 011223457889999999999999999999875443
No 187
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=9.2e-38 Score=339.31 Aligned_cols=262 Identities=21% Similarity=0.248 Sum_probs=202.5
Q ss_pred HHhhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
.+.++|++.+.||+|+||+||+|+. .+++.||||++... .....+.+|+++++.++|+++
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-------------------~~~~~~~~e~~~l~~l~~~~~ 66 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK-------------------TKHPQLHIESKIYKMMQGGVG 66 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----------------------CCCHHHHHHHHHHHTTSTT
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccc-------------------ccchHHHHHHHHHHHhcCCCC
Confidence 3457899999999999999999996 57899999986311 223458889999999998887
Q ss_pred ceEEEEE-ecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe---
Q 002250 705 VKLYCSI-TSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL--- 780 (947)
Q Consensus 705 v~l~~~~-~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll--- 780 (947)
+..++++ ..++..++||||+ +++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 67 i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~ 141 (296)
T 4hgt_A 67 IPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLG 141 (296)
T ss_dssp CCCEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCG
T ss_pred CCeeeeecCCCCceEEEEEcc-CCCHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeecc
Confidence 7776665 5667779999999 99999999853 345899999999999999999999 8999999999999999
Q ss_pred cCCCCeEEeccccceecccCCCCc-----ceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAGD-----LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFG- 854 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~- 854 (947)
+.++.+||+|||+++......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 142 ~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 221 (296)
T 4hgt_A 142 KKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA 221 (296)
T ss_dssp GGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS
T ss_pred CCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchh
Confidence 788999999999998765543311 12345789999999999999999999999999999999999999965321
Q ss_pred CcccHH-HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 855 DSKDIV-NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 855 ~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
...... ......... .........+..+.+++.+||+.||++|||+.++++.|+++.
T Consensus 222 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~ 279 (296)
T 4hgt_A 222 TKRQKYERISEKKMST----------PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF 279 (296)
T ss_dssp SSSSHHHHHHHHHHHS----------CHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcccccc----------hhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 111111 111111100 001111223457889999999999999999999999998754
No 188
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=3e-38 Score=363.31 Aligned_cols=251 Identities=24% Similarity=0.281 Sum_probs=194.5
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +|+.||||++... ..........+.+|+.+++.++||||++
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~--------------~~~~~~~~~~~~~e~~~l~~l~h~~iv~ 212 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKE--------------VIVAKDEVAHTLTENRVLQNSRHPFLTA 212 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHH--------------HHC-------------CCCCCSCTTSCC
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhh--------------hhhhhHHHHHHHHHHHHHHhCCCCeEee
Confidence 467999999999999999999965 7899999998421 0112233456778999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEeccCCCCCeEecCCCC
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFD-RPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~-~~ivH~Dlkp~NIll~~~~~ 785 (947)
+++++...+..++||||+++|+|.+++... ..+++..+..++.|++.||+||| + .+|+||||||+|||++.++.
T Consensus 213 l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~ 287 (446)
T 4ejn_A 213 LKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGH 287 (446)
T ss_dssp EEEEEEETTEEEEEECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSC
T ss_pred EEEEEeeCCEEEEEEeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCC
Confidence 999999999999999999999999999864 35899999999999999999999 6 89999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+|||+|+....... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||... +.......
T Consensus 288 ~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~ 360 (446)
T 4ejn_A 288 IKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHEKLFEL 360 (446)
T ss_dssp EEECCCCCCCTTCC-------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEEccCCCceeccCCCc--ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC-----CHHHHHHH
Confidence 99999999975433221 223467999999999999999999999999999999999999999532 11222111
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP-----SMRVVVQ 915 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~ev~~ 915 (947)
....... ++......+.+++.+|++.||.+|| ++.|+++
T Consensus 361 i~~~~~~-----------~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 361 ILMEEIR-----------FPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHHCCCC-----------CCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHhCCCC-----------CCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 1111111 1222345688999999999999999 9999986
No 189
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=350.57 Aligned_cols=264 Identities=24% Similarity=0.341 Sum_probs=195.2
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHH--HHHHhhccccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAE--VATLSAVRHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E--~~~l~~l~h~niv 705 (947)
.++|++.+.||+|+||+||+|+.. ++.||||++.. .....+..| +..+..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~--------------------~~~~~~~~e~~~~~~~~~~h~~i~ 70 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSLD-ERPVAVKVFSF--------------------ANRQNFINEKNIYRVPLMEHDNIA 70 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEET-TEEEEEEEEEG--------------------GGHHHHHHHHHHHTSTTCCCTTBC
T ss_pred hHHhheeeecccCCCeEEEEEEEC-CeEEEEEEeec--------------------cchhhHHHHHHHHHHHhccCcchh
Confidence 468899999999999999999874 89999999831 112334444 4445568999999
Q ss_pred eEEEEEec-----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCC---------CeEec
Q 002250 706 KLYCSITS-----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDR---------PVIHR 771 (947)
Q Consensus 706 ~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~---------~ivH~ 771 (947)
++++++.. ....++||||+++|+|.+++... ..++..+..++.|++.||+||| +. +|+||
T Consensus 71 ~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~ 144 (336)
T 3g2f_A 71 RFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH---TSDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHR 144 (336)
T ss_dssp CEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECS
T ss_pred hheecccccccCCCceEEEEEecCCCCcHHHHHhhc---ccchhHHHHHHHHHHHHHHHHH---hhhccccccccceeec
Confidence 99986543 23468999999999999999763 3588999999999999999999 77 99999
Q ss_pred cCCCCCeEecCCCCeEEeccccceecccCCC------CcceecccccccccCcccccc-------CCCCCccchHHHHHH
Q 002250 772 DVKSSNILLDLEWKPRIADFGLAKIVQTGEA------GDLTHVIAGTHGYIAPEYAYT-------CKINEKSDVYSFGVV 838 (947)
Q Consensus 772 Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slGv~ 838 (947)
||||+||+++.++.+||+|||+++....... ........||+.|+|||++.+ ..++.++|||||||+
T Consensus 145 Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~i 224 (336)
T 3g2f_A 145 DLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLI 224 (336)
T ss_dssp SCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHH
Confidence 9999999999999999999999987654321 111224469999999999876 356678999999999
Q ss_pred HHHHHhCCCCCCCCCCCcc-------------cHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCC
Q 002250 839 LMELVTGKRPIVPEFGDSK-------------DIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPA 905 (947)
Q Consensus 839 l~elltg~~p~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~ 905 (947)
+|||++|+.||........ ....+.. ....... ...+ +.........+..+.+++.+||+.||+
T Consensus 225 l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~~~~~~~~l~~li~~cl~~dP~ 301 (336)
T 3g2f_A 225 YWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQV-LVSREKQ-RPKF-PEAWKENSLAVRSLKETIEDCWDQDAE 301 (336)
T ss_dssp HHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHH-HHTTSCC-CCCC-CTTCCCCSHHHHHHHHHHHHHSCSSGG
T ss_pred HHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHh-hhccccc-CCCC-CcccccccchHHHHHHHHHHHhcCChh
Confidence 9999999888754321110 0111100 0000000 0000 011112234667899999999999999
Q ss_pred CCCCHHHHHHHhhccC
Q 002250 906 FRPSMRVVVQMLEEAE 921 (947)
Q Consensus 906 ~RPt~~ev~~~L~~~~ 921 (947)
+|||+.|+++.|+++.
T Consensus 302 ~Rps~~e~l~~L~~ll 317 (336)
T 3g2f_A 302 ARLTAQXAEERMAELM 317 (336)
T ss_dssp GSCCHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHHH
Confidence 9999999999999865
No 190
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=360.66 Aligned_cols=319 Identities=21% Similarity=0.206 Sum_probs=178.9
Q ss_pred cEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCC
Q 002250 161 YWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQN 240 (947)
Q Consensus 161 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 240 (947)
+.++.++++++ .+|..+. ++|+.|+|++|+|++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45566666666 4555443 46777777777777666677777777777777777777766777777777777777777
Q ss_pred CCCCCCc-cccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCC
Q 002250 241 RLEGDLS-ELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPP 319 (947)
Q Consensus 241 ~l~~~~~-~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 319 (947)
+++..+. .+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+++..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 168 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-- 168 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC--
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC--
Confidence 7766554 3566777777777777777666777777777777777777777666666777777777777766665321
Q ss_pred CcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccc
Q 002250 320 DMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSL 399 (947)
Q Consensus 320 ~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 399 (947)
+..|.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.++.
T Consensus 169 ----------------------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------- 218 (477)
T 2id5_A 169 ----------------------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-------- 218 (477)
T ss_dssp ----------------------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT--------
T ss_pred ----------------------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc--------
Confidence 22344455555555555555544444444455555555544444333322
Q ss_pred cEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCc
Q 002250 400 ALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQN 479 (947)
Q Consensus 400 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 479 (947)
.+....+|+.|+|++|++++..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 219 ----------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 219 ----------------NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp ----------------TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred ----------------ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 2222223444444444444222233444444444444444444444444444444444444444
Q ss_pred eeeeecCCCCCccCcCcEEECCCCccCCccCCccc-ccccceeeCCCCcCCC
Q 002250 480 SLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAG 530 (947)
Q Consensus 480 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~ 530 (947)
++++..|..|.++++|+.|+|++|++++.++..+. +++|+.|+|++|++++
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 44444444444444444444444444443333322 3444444444444443
No 191
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=376.96 Aligned_cols=249 Identities=21% Similarity=0.289 Sum_probs=197.6
Q ss_pred cccccCceeEEEEEeC---CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEEEEEe
Q 002250 636 LIGKGGSGNVYKVVLN---SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLYCSIT 712 (947)
Q Consensus 636 ~iG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 712 (947)
.||+|+||.||+|... ++..||||++.... .....+.+.+|++++++++|||||++++++.
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~----------------~~~~~~~~~~E~~il~~l~hpniv~l~~~~~ 406 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT----------------EKADTEEMMREAQIMHQLDNPYIVRLIGVCQ 406 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCC----------------SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEE
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC----------------ChHHHHHHHHHHHHHHhCCCCCEeeEEEEec
Confidence 7999999999999864 46679999984221 1234578999999999999999999999998
Q ss_pred cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEeccc
Q 002250 713 SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADFG 792 (947)
Q Consensus 713 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG 792 (947)
. +..++||||+++|+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||
T Consensus 407 ~-~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFG 481 (613)
T 2ozo_A 407 A-EALMLVMEMAGGGPLHKFLVGK-REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFG 481 (613)
T ss_dssp S-SSEEEEEECCTTCBHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCS
T ss_pred c-CCeEEEEEeCCCCcHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeecc
Confidence 6 5689999999999999999763 456899999999999999999999 8899999999999999999999999999
Q ss_pred cceecccCCCC-cceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhcccc
Q 002250 793 LAKIVQTGEAG-DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKMDSR 870 (947)
Q Consensus 793 ~a~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~ 870 (947)
+++........ .......+|+.|+|||++....++.++|||||||++|||++ |+.||.... ..++...+.. .
T Consensus 482 la~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--~~~~~~~i~~----~ 555 (613)
T 2ozo_A 482 LSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQ----G 555 (613)
T ss_dssp TTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--SHHHHHHHHT----T
T ss_pred CcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHc----C
Confidence 99865433221 11122345689999999999999999999999999999998 999985431 2222222211 1
Q ss_pred ccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 871 DSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 871 ~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
...+.+..++..+.+++.+||+.||++||++.++++.|+.+
T Consensus 556 ---------~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 596 (613)
T 2ozo_A 556 ---------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRAC 596 (613)
T ss_dssp ---------CCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHH
T ss_pred ---------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 11122334556789999999999999999999999999874
No 192
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2e-37 Score=338.62 Aligned_cols=266 Identities=19% Similarity=0.191 Sum_probs=200.2
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
...++|++.+.||+|+||.||+|+.. +++.||||++.... .........+.+|+.++++++||||
T Consensus 31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--------------~~~~~~~~~~~~e~~~l~~l~hp~i 96 (309)
T 2h34_A 31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETL--------------SSDPVFRTRMQREARTAGRLQEPHV 96 (309)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGG--------------GGSHHHHHHHHHHHHHHTTCCCTTB
T ss_pred cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCccc--------------ccCHHHHHHHHHHHHHHhhcCCCCe
Confidence 34578999999999999999999965 78999999983110 1111224678899999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 97 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~ 171 (309)
T 2h34_A 97 VPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADD 171 (309)
T ss_dssp CCEEEEEEETTEEEEEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTS
T ss_pred eEEEEEEeeCCeEEEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCC
Confidence 99999999999999999999999999999864 35899999999999999999999 88999999999999999999
Q ss_pred CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVY 864 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~ 864 (947)
.+||+|||++......... ......||+.|+|||++.+..++.++||||||+++|||++|+.||... .. ....
T Consensus 172 ~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~-~~~~ 244 (309)
T 2h34_A 172 FAYLVDFGIASATTDEKLT-QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD-----QL-SVMG 244 (309)
T ss_dssp CEEECSCCC-----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC-----HH-HHHH
T ss_pred CEEEecCccCccccccccc-cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc-----hH-HHHH
Confidence 9999999999765543221 122446899999999999989999999999999999999999998532 11 1111
Q ss_pred hhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC-CHHHHHHHhhccCCCC
Q 002250 865 SKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP-SMRVVVQMLEEAEPCS 924 (947)
Q Consensus 865 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-t~~ev~~~L~~~~~~~ 924 (947)
........ .........+..+.+++.+||+.||++|| ++.++++.|+++....
T Consensus 245 ~~~~~~~~-------~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~ 298 (309)
T 2h34_A 245 AHINQAIP-------RPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA 298 (309)
T ss_dssp HHHHSCCC-------CGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred HHhccCCC-------CccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence 11111111 11112233345688899999999999999 9999999999876554
No 193
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=2e-37 Score=334.36 Aligned_cols=257 Identities=23% Similarity=0.298 Sum_probs=203.3
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++....... .......+.+.+|+.++++++||||++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~-----------~~~~~~~~~~~~E~~~l~~l~h~~i~~ 72 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSS-----------SRRGVSREEIEREVNILREIRHPNIIT 72 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTT-----------CSSSBCHHHHHHHHHHHHHCCCTTBCC
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccc-----------cccchHHHHHHHHHHHHHhCCCCCeee
Confidence 468999999999999999999976 68999999985432211 111234577899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC--
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW-- 784 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~-- 784 (947)
+++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 73 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~ 147 (283)
T 3bhy_A 73 LHDIFENKTDVVLILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVP 147 (283)
T ss_dssp EEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSS
T ss_pred hhheecCCCeEEEEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCC
Confidence 999999999999999999999999999763 45899999999999999999999 88999999999999998877
Q ss_pred --CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Q 002250 785 --KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 785 --~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 862 (947)
.+||+|||.+........ .....||+.|+|||++....++.++||||||+++|||++|+.||.... ..+.
T Consensus 148 ~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~ 219 (283)
T 3bhy_A 148 NPRIKLIDFGIAHKIEAGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET-----KQET 219 (283)
T ss_dssp SCCEEECCCTTCEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS-----HHHH
T ss_pred CCceEEEecccceeccCCCc---ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc-----hHHH
Confidence 899999999987644322 223468999999999998899999999999999999999999985321 1111
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
........... ..+.....+..+.+++.+|++.||++|||+.|+++
T Consensus 220 ~~~~~~~~~~~-------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 220 LTNISAVNYDF-------DEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp HHHHHTTCCCC-------CHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHhHhcccCC-------cchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 11111111100 01111223456889999999999999999999996
No 194
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.6e-37 Score=337.47 Aligned_cols=260 Identities=22% Similarity=0.251 Sum_probs=205.3
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+. .+++.||||++... .....+.+|+.+++.++|++++.
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-------------------~~~~~~~~e~~~l~~l~~~~~i~ 68 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK-------------------TKHPQLHIESKIYKMMQGGVGIP 68 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESC-------------------SSCCHHHHHHHHHHHHTTSTTCC
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCC-------------------cchhHHHHHHHHHHHhhcCCCCC
Confidence 47899999999999999999996 57999999987321 22346889999999999988776
Q ss_pred EEEEE-ecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe---cC
Q 002250 707 LYCSI-TSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL---DL 782 (947)
Q Consensus 707 l~~~~-~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll---~~ 782 (947)
.++++ ..++..++||||+ +++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++ +.
T Consensus 69 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~ 143 (296)
T 3uzp_A 69 TIRWCGAEGDYNVMVMELL-GPSLEDLFNFC-SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKK 143 (296)
T ss_dssp CEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGG
T ss_pred ccccccCCCCceEEEEEec-CCCHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCC
Confidence 66655 5566779999999 99999999853 346899999999999999999999 8999999999999999 48
Q ss_pred CCCeEEeccccceecccCCCCc-----ceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCC-Cc
Q 002250 783 EWKPRIADFGLAKIVQTGEAGD-----LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFG-DS 856 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~-~~ 856 (947)
++.+||+|||+++......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ..
T Consensus 144 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~ 223 (296)
T 3uzp_A 144 GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK 223 (296)
T ss_dssp TTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSS
T ss_pred CCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhh
Confidence 8999999999998765543311 12345799999999999999999999999999999999999999965321 12
Q ss_pred ccHHHHH-HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 857 KDIVNWV-YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 857 ~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
....... ...... .........+..+.+++.+||+.||++|||+.++++.|+++.
T Consensus 224 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 279 (296)
T 3uzp_A 224 RQKYERISEKKMST----------PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF 279 (296)
T ss_dssp SSHHHHHHHHHHHS----------CHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCC----------chHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHH
Confidence 2222111 111110 001111223456889999999999999999999999999754
No 195
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=345.66 Aligned_cols=263 Identities=23% Similarity=0.289 Sum_probs=204.1
Q ss_pred hccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||.||+|+. .+++.||||++... .....+.+.+|+.++++++||||+++
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----------------~~~~~~~~~~E~~~l~~l~h~~iv~~ 91 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH-----------------EQQDREEAQREADMHRLFNHPNILRL 91 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES-----------------SHHHHHHHHHHHHHHHTCCCTTBCCC
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC-----------------CHHHHHHHHHHHHHHhhcCCCCeeeE
Confidence 6799999999999999999996 57999999988321 11334678899999999999999999
Q ss_pred EEEEec----CCccEEEEeccCCCChHHHhhhc--CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 708 YCSITS----EDSNLLVYEYLPNGSLWDRLHTC--HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 708 ~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
++++.. ....++||||+++|+|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 92 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~ 168 (317)
T 2buj_A 92 VAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLG 168 (317)
T ss_dssp CEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEC
T ss_pred EEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEc
Confidence 999873 44678999999999999999763 3456899999999999999999999 88999999999999999
Q ss_pred CCCCeEEeccccceecccCCCCc-------ceecccccccccCccccccCC---CCCccchHHHHHHHHHHHhCCCCCCC
Q 002250 782 LEWKPRIADFGLAKIVQTGEAGD-------LTHVIAGTHGYIAPEYAYTCK---INEKSDVYSFGVVLMELVTGKRPIVP 851 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~slGv~l~elltg~~p~~~ 851 (947)
.++.+||+|||.+.......... ......||+.|+|||++.... ++.++||||||+++|||++|+.||..
T Consensus 169 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~ 248 (317)
T 2buj_A 169 DEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDM 248 (317)
T ss_dssp TTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHH
T ss_pred CCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhh
Confidence 99999999999987543221110 011235799999999987543 68899999999999999999999843
Q ss_pred CCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCC
Q 002250 852 EFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCS 924 (947)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~ 924 (947)
.............. ... .......+..+.+++.+||+.||.+|||+.++++.|+++.+.+
T Consensus 249 ~~~~~~~~~~~~~~----~~~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~ 308 (317)
T 2buj_A 249 VFQKGDSVALAVQN----QLS---------IPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPA 308 (317)
T ss_dssp HHHTTSCHHHHHHC----C-----------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCC
T ss_pred hhcccchhhHHhhc----cCC---------CCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCC
Confidence 21111122211111 000 0111223456889999999999999999999999999987654
No 196
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.9e-38 Score=354.40 Aligned_cols=268 Identities=23% Similarity=0.342 Sum_probs=192.3
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-cc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HV 702 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~ 702 (947)
+.+.++|++.+.||+|+||.||+|... +|+.||||++.... ........+.+|+.+++++. ||
T Consensus 5 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~---------------~~~~~~~~~~~E~~~l~~l~~h~ 69 (388)
T 3oz6_A 5 RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAF---------------QNSTDAQRTFREIMILTELSGHE 69 (388)
T ss_dssp HHHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC-----------------CCHHHHHHHHHHHHHHHHTTTCT
T ss_pred CcccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccc---------------cChHHHHHHHHHHHHHHhccCCC
Confidence 456789999999999999999999965 78999999984211 11223456779999999997 99
Q ss_pred ccceEEEEEecCC--ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 703 NVVKLYCSITSED--SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 703 niv~l~~~~~~~~--~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
||+++++++..++ ..|+||||++ ++|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 70 niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll 142 (388)
T 3oz6_A 70 NIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILL 142 (388)
T ss_dssp TBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEE
T ss_pred CCCeeeeEEecCCCCEEEEEecccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEE
Confidence 9999999997644 6799999996 689999876 35889999999999999999999 8999999999999999
Q ss_pred cCCCCeEEeccccceecccCCC-------------------CcceecccccccccCcccccc-CCCCCccchHHHHHHHH
Q 002250 781 DLEWKPRIADFGLAKIVQTGEA-------------------GDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLM 840 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~-------------------~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~ 840 (947)
+.++.+||+|||+|+....... .......+||+.|+|||++.+ ..++.++||||+||++|
T Consensus 143 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ 222 (388)
T 3oz6_A 143 NAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILG 222 (388)
T ss_dssp CTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHH
T ss_pred cCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHH
Confidence 9999999999999986543110 111234579999999999976 57899999999999999
Q ss_pred HHHhCCCCCCCCCCCcccHHHHHHhhccccc--cccccc------------------cCCCCccC-------------HH
Q 002250 841 ELVTGKRPIVPEFGDSKDIVNWVYSKMDSRD--SMLTVV------------------DPNISEIL-------------KE 887 (947)
Q Consensus 841 elltg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------d~~~~~~~-------------~~ 887 (947)
||++|+.||.... ..+....+........ .+..+. ........ ..
T Consensus 223 ell~g~~pf~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T 3oz6_A 223 EILCGKPIFPGSS--TMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKAD 300 (388)
T ss_dssp HHHHSSCSCCCSS--HHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCC
T ss_pred HHHhCCCCCCCCC--HHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhccccccccc
Confidence 9999999995431 1111111111100000 000000 00000000 02
Q ss_pred HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 888 DALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 888 ~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
....+.+++.+|++.||++|||+.|++++
T Consensus 301 ~~~~~~dll~~~L~~dP~~R~t~~e~l~H 329 (388)
T 3oz6_A 301 CNEEALDLLDKLLQFNPNKRISANDALKH 329 (388)
T ss_dssp CCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred CCHHHHHHHHHhhccCcccCCCHHHHhCC
Confidence 24568899999999999999999999976
No 197
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=5.4e-38 Score=357.44 Aligned_cols=263 Identities=22% Similarity=0.328 Sum_probs=195.0
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
+.+.++|.+.+.||+|+||+||+|... +++.||||++........ ..........+.+|+.++++++|||
T Consensus 131 ~~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~---------~~~~~~~~~~~~~E~~~l~~l~hpn 201 (419)
T 3i6u_A 131 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIG---------SAREADPALNVETEIEILKKLNHPC 201 (419)
T ss_dssp HHHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC-----------------CCHHHHHHHHHHCCCTT
T ss_pred hhhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhccc---------ccccchhHHHHHHHHHHHHhCCCCC
Confidence 566789999999999999999999965 689999999843211100 0111123346889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++.. +..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 202 iv~l~~~~~~-~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~ 275 (419)
T 3i6u_A 202 IIKIKNFFDA-EDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQ 275 (419)
T ss_dssp BCCCCEEEES-SEEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSS
T ss_pred EeeEEEEEec-CceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecC
Confidence 9999999865 4579999999999999998763 45899999999999999999999 8899999999999999754
Q ss_pred ---CCeEEeccccceecccCCCCcceecccccccccCcccccc---CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 784 ---WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT---CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 784 ---~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
+.+||+|||+|+...... ......||+.|+|||++.. ..++.++|||||||++|||++|+.||..... ..
T Consensus 276 ~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~-~~ 351 (419)
T 3i6u_A 276 EEDCLIKITDFGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT-QV 351 (419)
T ss_dssp SSSCCEEECCSSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS-SC
T ss_pred CCcceEEEeecccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc-hH
Confidence 459999999998764432 2234579999999999863 5678899999999999999999999954322 22
Q ss_pred cHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 858 DIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.+....... ... ..++.....+..+.+++.+|++.||++|||+.|++++
T Consensus 352 ~~~~~i~~~---~~~-------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 400 (419)
T 3i6u_A 352 SLKDQITSG---KYN-------FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 400 (419)
T ss_dssp CHHHHHHTT---CCC-------CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHhcC---CCC-------CCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 222221111 000 0111112234568899999999999999999999874
No 198
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=3.3e-38 Score=347.90 Aligned_cols=258 Identities=24% Similarity=0.345 Sum_probs=203.4
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEE--EEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-ccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKEL--AVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNV 704 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~v--avK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~ni 704 (947)
++|++.+.||+|+||.||+|+.. ++..+ |||++... ......+.+.+|+++++++ +||||
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~----------------~~~~~~~~~~~E~~~l~~l~~hp~i 88 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY----------------ASKDDHRDFAGELEVLCKLGHHPNI 88 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC----------------------CHHHHHHHHHTTCCCCTTB
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc----------------cchHHHHHHHHHHHHHHhccCCCch
Confidence 68899999999999999999965 56644 99988421 1123346788999999999 89999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcC--------------CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEe
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCH--------------KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIH 770 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH 770 (947)
+++++++..++..++||||+++|+|.+++.... ...+++..++.++.|++.||+||| +.+|+|
T Consensus 89 v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH 165 (327)
T 1fvr_A 89 INLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIH 165 (327)
T ss_dssp CCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEEC
T ss_pred hhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccC
Confidence 999999999999999999999999999998643 246899999999999999999999 899999
Q ss_pred ccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCC
Q 002250 771 RDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPI 849 (947)
Q Consensus 771 ~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~ 849 (947)
|||||+||+++.++.+||+|||+++...... ......+++.|+|||++.+..++.++||||||+++|||++ |+.||
T Consensus 166 ~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf 242 (327)
T 1fvr_A 166 RDLAARNILVGENYVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY 242 (327)
T ss_dssp SCCSGGGEEECGGGCEEECCTTCEESSCEEC---CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred CCCccceEEEcCCCeEEEcccCcCccccccc---cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999997433221 1123356889999999988889999999999999999998 99998
Q ss_pred CCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 850 VPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
... ...+........ . ....+...+..+.+++.+|++.||++|||+.|+++.|+++...
T Consensus 243 ~~~-----~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 301 (327)
T 1fvr_A 243 CGM-----TCAELYEKLPQG-Y---------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE 301 (327)
T ss_dssp TTC-----CHHHHHHHGGGT-C---------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred CCC-----cHHHHHHHhhcC-C---------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 432 222222111111 0 0111223345688999999999999999999999999875443
No 199
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=4.1e-38 Score=340.70 Aligned_cols=249 Identities=20% Similarity=0.255 Sum_probs=199.5
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVN 703 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~n 703 (947)
.+.++|++.+.||+|+||+||+|+.. +++.||||++..... .......+.+|+.++.++ +|||
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---------------~~~~~~~~~~e~~~~~~l~~h~~ 72 (289)
T 1x8b_A 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLA---------------GSVDEQNALREVYAHAVLGQHSH 72 (289)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCT---------------TSHHHHHHHHHHHHHHHSCSCTT
T ss_pred cccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEeccccc---------------ccHHHHHHHHHHHHHHHhCCCCC
Confidence 34678999999999999999999976 799999999843211 112346778899999999 9999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCC--ccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHK--IEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~--~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
|+++++++.+++..++||||+++++|.+++..... ..+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 73 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~ 149 (289)
T 1x8b_A 73 VVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFIS 149 (289)
T ss_dssp BCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC
T ss_pred eeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEc
Confidence 99999999999999999999999999999986422 56899999999999999999999 89999999999999998
Q ss_pred CC-------------------CCeEEeccccceecccCCCCcceecccccccccCccccccC-CCCCccchHHHHHHHHH
Q 002250 782 LE-------------------WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLME 841 (947)
Q Consensus 782 ~~-------------------~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~e 841 (947)
.+ ..+||+|||.+....... ...||+.|+|||++.+. .++.++||||||+++||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~ 223 (289)
T 1x8b_A 150 RTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVC 223 (289)
T ss_dssp --------------------CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccccccccccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHH
Confidence 44 479999999998765432 23589999999999766 56689999999999999
Q ss_pred HHhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 842 LVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 842 lltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
|++|.+|+.. .+....... ...+..+...+..+.+++.+|++.||++|||+.|++++
T Consensus 224 l~~~~~~~~~-----~~~~~~~~~-------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 224 AAGAEPLPRN-----GDQWHEIRQ-------------GRLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp HTTCCCCCSS-----SHHHHHHHT-------------TCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred HhcCCCCCcc-----hhHHHHHHc-------------CCCCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 9999877532 111111110 11112222334568899999999999999999999864
No 200
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.7e-38 Score=348.48 Aligned_cols=260 Identities=23% Similarity=0.280 Sum_probs=204.1
Q ss_pred hhccCCcccccccCceeEEEEEe----CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-ccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL----NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHV 702 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~ 702 (947)
.++|++.+.||+|+||+||+|+. .+++.||||++.... ..........+.+|+++++++ .||
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~-------------~~~~~~~~~~~~~E~~~l~~l~~h~ 119 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKAT-------------IVQKAKTTEHTRTERQVLEHIRQSP 119 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEE-------------EEEEESSGGGCCCHHHHHHHHHTCT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHH-------------hhhhhhHHHHHHHHHHHHHHccCCC
Confidence 46899999999999999999997 368999999984211 011123345677899999999 699
Q ss_pred ccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL 782 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 782 (947)
||+++++++..++..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 120 ~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~ 194 (355)
T 1vzo_A 120 FLVTLHYAFQTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDS 194 (355)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECT
T ss_pred ceeEEEEEEeeCceEEEEeecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECC
Confidence 9999999999999999999999999999999864 35889999999999999999999 889999999999999999
Q ss_pred CCCeEEeccccceecccCCCCcceecccccccccCccccccC--CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 783 EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC--KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
++.+||+|||+++........ ......||+.|+|||++.+. .++.++|||||||++|||++|+.||...... ....
T Consensus 195 ~~~~kl~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~-~~~~ 272 (355)
T 1vzo_A 195 NGHVVLTDFGLSKEFVADETE-RAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK-NSQA 272 (355)
T ss_dssp TSCEEESCSSEEEECCGGGGG-GGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC-CCHH
T ss_pred CCcEEEeeCCCCeecccCCCC-cccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc-chHH
Confidence 999999999999865433222 12245799999999999853 4788999999999999999999999643221 1222
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC-----CHHHHHHHhh
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP-----SMRVVVQMLE 918 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~ev~~~L~ 918 (947)
.......... ...+.+....+.+++.+||+.||.+|| ++.|++++.-
T Consensus 273 ~~~~~~~~~~-----------~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~ 324 (355)
T 1vzo_A 273 EISRRILKSE-----------PPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLF 324 (355)
T ss_dssp HHHHHHHHCC-----------CCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGG
T ss_pred HHHHHHhccC-----------CCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcc
Confidence 2222111111 112223345678899999999999999 9999987643
No 201
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=3.7e-38 Score=341.41 Aligned_cols=256 Identities=22% Similarity=0.266 Sum_probs=202.2
Q ss_pred hccCCcc-cccccCceeEEEEEe---CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 629 DAVKPEN-LIGKGGSGNVYKVVL---NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 629 ~~~~~~~-~iG~G~~g~Vy~~~~---~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
++|++.+ .||+|+||+||+|.. .+++.||||++.... ......+.+.+|+.++++++||||
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~e~~~l~~l~h~~i 80 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA---------------NDPALKDELLAEANVMQQLDNPYI 80 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC--------------------CHHHHHHHHHHHHHHTCCCTTB
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccc---------------cCHHHHHHHHHHHHHHHhCCCCCE
Confidence 5677777 999999999999964 247889999984221 111234678999999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++++ ..+..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 81 ~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~ 154 (291)
T 1xbb_A 81 VRMIGIC-EAESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQH 154 (291)
T ss_dssp CCEEEEE-ESSSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETT
T ss_pred EEEEEEE-CCCCcEEEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCC
Confidence 9999999 566789999999999999999874 35889999999999999999999 88999999999999999999
Q ss_pred CeEEeccccceecccCCCCc-ceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGD-LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
.+||+|||++.......... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||... ........
T Consensus 155 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~~ 232 (291)
T 1xbb_A 155 YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTAM 232 (291)
T ss_dssp EEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHHH
T ss_pred cEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHHH
Confidence 99999999998765443211 1222346789999999988889999999999999999999 99998532 11122221
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
+. ... ....+...+..+.+++.+||+.||++||++.++++.|+++
T Consensus 233 ~~----~~~---------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 277 (291)
T 1xbb_A 233 LE----KGE---------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 277 (291)
T ss_dssp HH----TTC---------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred HH----cCC---------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence 11 111 1112233456788999999999999999999999999875
No 202
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=341.02 Aligned_cols=265 Identities=20% Similarity=0.269 Sum_probs=197.8
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.. +|+.||||++.... ........+.+|++++++++||||++
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~i~~ 66 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESE---------------DDPVIKKIALREIRMLKQLKHPNLVN 66 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCC---------------C-HHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccc---------------cchHHHHHHHHHHHHHHhCCCCCccc
Confidence 467899999999999999999976 58999999884221 01122356789999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 67 ~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~ 141 (311)
T 4agu_A 67 LLEVFRRKRRLHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVI 141 (311)
T ss_dssp EEEEEEETTEEEEEEECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCE
T ss_pred hhheeecCCeEEEEEEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCE
Confidence 999999999999999999999999988753 45899999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||.+........ ......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.... ..+.......
T Consensus 142 kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~ 217 (311)
T 4agu_A 142 KLCDFGFARLLTGPSD--YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKS--DVDQLYLIRK 217 (311)
T ss_dssp EECCCTTCEECC--------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHH
T ss_pred EEeeCCCchhccCccc--ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHH
Confidence 9999999987653322 1224468999999999876 568999999999999999999999985432 1111111111
Q ss_pred hccc-----------ccccc--ccccCCC----CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 866 KMDS-----------RDSML--TVVDPNI----SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 866 ~~~~-----------~~~~~--~~~d~~~----~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.... ..... ...++.. .......+..+.+++.+|++.||++|||+.|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 218 TLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp HHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred HhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 1000 00000 0000000 00112344568899999999999999999999964
No 203
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=4.1e-37 Score=332.04 Aligned_cols=249 Identities=24% Similarity=0.336 Sum_probs=203.6
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++... ..........+.+|++++++++||||++
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--------------~~~~~~~~~~~~~e~~~l~~l~h~~i~~ 78 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKS--------------QLEKEGVEHQLRREIEIQSHLRHPNILR 78 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHHTCCCTTBCC
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEccc--------------ccchHHHHHHHHHHHHHHhcCCCCCEee
Confidence 367999999999999999999966 6889999998311 1112234567899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 79 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~ 153 (284)
T 2vgo_A 79 MYNYFHDRKRIYLMLEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGEL 153 (284)
T ss_dssp EEEEEECSSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCE
T ss_pred EEEEEEcCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCE
Confidence 9999999999999999999999999998743 5889999999999999999999 8999999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||++....... .....||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+.....
T Consensus 154 kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~ 224 (284)
T 2vgo_A 154 KIADFGWSVHAPSLR----RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP-----SHTETHRRI 224 (284)
T ss_dssp EECCCTTCEECSSSC----BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHH
T ss_pred EEecccccccCcccc----cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC-----CHhHHHHHH
Confidence 999999997654322 22456899999999999989999999999999999999999998532 111111111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.... .. .+......+.+++.+|++.||.+|||+.|+++
T Consensus 225 ~~~~--------~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 225 VNVD--------LK---FPPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HTTC--------CC---CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hccc--------cC---CCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 1111 11 11223456788999999999999999999986
No 204
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.1e-37 Score=358.56 Aligned_cols=263 Identities=23% Similarity=0.256 Sum_probs=194.3
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||+||+|+.. +++.||||++... .........+.+|+.+++.++||||+
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~---------------~~~~~~~~~~~~E~~~l~~l~hpnIv 124 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP---------------FQNQTHAKRAYRELVLMKCVNHKNII 124 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESG---------------GGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECcc---------------ccChHHHHHHHHHHHHHHhCCCCCCC
Confidence 3578999999999999999999965 6899999998421 11123346788999999999999999
Q ss_pred eEEEEEecCC------ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 706 KLYCSITSED------SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 706 ~l~~~~~~~~------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
++++++.... ..|+||||+++ ++.+.+.. .+++..+..++.|++.||+||| +.+|+||||||+|||
T Consensus 125 ~l~~~~~~~~~~~~~~~~~lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIl 196 (464)
T 3ttj_A 125 SLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIV 196 (464)
T ss_dssp CCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEE
T ss_pred cEEEEEccCCccccCCeEEEEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEE
Confidence 9999997654 45999999965 56666653 3889999999999999999999 889999999999999
Q ss_pred ecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 780 LDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 780 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
++.++.+||+|||+|+...... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+... ...+
T Consensus 197 l~~~~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~-~~~~ 272 (464)
T 3ttj_A 197 VKSDCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDY-IDQW 272 (464)
T ss_dssp ECTTSCEEECCCCCC-----CC---CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHHH
T ss_pred EeCCCCEEEEEEEeeeecCCCc---ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHH
Confidence 9999999999999998665432 22345799999999999999999999999999999999999999954310 0000
Q ss_pred HHHHHh------------------hccccccc-----ccccc----CCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHH
Q 002250 860 VNWVYS------------------KMDSRDSM-----LTVVD----PNISEILKEDALKVLRIAIHCTNKLPAFRPSMRV 912 (947)
Q Consensus 860 ~~~~~~------------------~~~~~~~~-----~~~~d----~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~e 912 (947)
...+.. ........ ...+. +...+........+.+++.+|++.||++|||+.|
T Consensus 273 ~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e 352 (464)
T 3ttj_A 273 NKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDD 352 (464)
T ss_dssp HHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred HHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHH
Confidence 010000 00000000 00000 0001112223567899999999999999999999
Q ss_pred HHHH
Q 002250 913 VVQM 916 (947)
Q Consensus 913 v~~~ 916 (947)
++++
T Consensus 353 ~L~H 356 (464)
T 3ttj_A 353 ALQH 356 (464)
T ss_dssp HHTS
T ss_pred HhcC
Confidence 9874
No 205
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=3.3e-37 Score=358.74 Aligned_cols=260 Identities=25% Similarity=0.329 Sum_probs=206.5
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.++|++.+.||+|+||+||+|+.. +++.||||++.. ..........+.+|++++++++|||
T Consensus 18 g~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---------------~~~~~~~~~~~~~E~~~l~~l~hpn 82 (486)
T 3mwu_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINK---------------ASAKNKDTSTILREVELLKKLDHPN 82 (486)
T ss_dssp CHHHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEH---------------HHHBCSCHHHHHHHHHHHHHCCCTT
T ss_pred CChhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEec---------------ccccchHHHHHHHHHHHHHhCCCCC
Confidence 456789999999999999999999975 789999999831 1122345677899999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec--
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD-- 781 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~-- 781 (947)
|+++++++..+...++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 83 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~ 157 (486)
T 3mwu_A 83 IMKLFEILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESK 157 (486)
T ss_dssp BCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSS
T ss_pred cCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecC
Confidence 999999999999999999999999999999764 35899999999999999999999 89999999999999995
Q ss_pred -CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 782 -LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 782 -~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
.++.+||+|||+++....... .....||+.|+|||++.+ .++.++||||+||++|||++|+.||... ...
T Consensus 158 ~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~ 228 (486)
T 3mwu_A 158 EKDCDIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK-----NEY 228 (486)
T ss_dssp STTCCEEECSCSCTTTBCCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHH
T ss_pred CCCCCEEEEECCcCeECCCCCc---cCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHH
Confidence 556799999999976544322 234579999999999875 5999999999999999999999999532 122
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH--hhcc
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM--LEEA 920 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~--L~~~ 920 (947)
+............ . .+.....+..+.+++.+|++.||++|||+.|++++ +++.
T Consensus 229 ~~~~~i~~~~~~~------~-~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~ 283 (486)
T 3mwu_A 229 DILKRVETGKYAF------D-LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY 283 (486)
T ss_dssp HHHHHHHHTCCCS------C-SGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHT
T ss_pred HHHHHHHhCCCCC------C-CcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccC
Confidence 2222111111110 0 11112234568899999999999999999999975 4443
No 206
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=346.48 Aligned_cols=262 Identities=20% Similarity=0.269 Sum_probs=194.2
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||+||+|+.. +++.||||++..... ......+.+|++++++++||||+++
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~----------------~~~~~~~~~E~~~l~~l~h~~iv~~ 65 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE----------------EGAPCTAIREVSLLKDLKHANIVTL 65 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC----------------------CCCCCCCHHHHSCCCCTTBCCE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccc----------------cccchhHHHHHHHHHhcCCCCCCee
Confidence 57889999999999999999976 789999999842211 1112234569999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++..++..++||||++ |+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 66 ~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~k 140 (324)
T 3mtl_A 66 HDIIHTEKSLTLVFEYLD-KDLKQYLDDC-GNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELK 140 (324)
T ss_dssp EEEEECSSCEEEEEECCS-EEHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEE
T ss_pred eeEEeeCCEEEEEecccc-cCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEE
Confidence 999999999999999996 5999998874 346899999999999999999999 89999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
|+|||+++....... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... ..+....+...
T Consensus 141 l~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~~~~~i~~~ 216 (324)
T 3mtl_A 141 LADFGLARAKSIPTK--TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGST--VEEQLHFIFRI 216 (324)
T ss_dssp ECSSSEEECC--------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHH
T ss_pred EccCcccccccCCcc--ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHH
Confidence 999999986543321 1223468999999999876 568999999999999999999999995431 11122222111
Q ss_pred cccc--cccccccc--------------CCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 867 MDSR--DSMLTVVD--------------PNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 867 ~~~~--~~~~~~~d--------------~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.... ..+..... .............+.+++.+|++.||++|||+.|+++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 217 LGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 1100 00000000 0001111223456789999999999999999999986
No 207
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=1e-37 Score=340.09 Aligned_cols=250 Identities=27% Similarity=0.388 Sum_probs=204.6
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.+.|+..+.||+|+||.||+|+.. +++.||||++.... .......+.+|+.++++++||||++
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~e~~~l~~l~h~~i~~ 84 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE----------------AEDEIEDIQQEITVLSQCDSPYVTK 84 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTT----------------CSTTHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccc----------------cHHHHHHHHHHHHHHHhCCCCCEeE
Confidence 367889999999999999999965 68999999984221 1234577899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..+...++||||+++++|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~ 158 (303)
T 3a7i_A 85 YYGSYLKDTKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEV 158 (303)
T ss_dssp EEEEEEETTEEEEEEECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCE
T ss_pred EEEEEecCCeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCE
Confidence 99999999999999999999999999975 46899999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||... .........
T Consensus 159 kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~ 231 (303)
T 3a7i_A 159 KLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL-----HPMKVLFLI 231 (303)
T ss_dssp EECCCTTCEECBTTBC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHH
T ss_pred EEeecccceecCcccc--ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc-----CHHHHHHHh
Confidence 9999999987654332 122456899999999999989999999999999999999999998532 111111111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.... ........+..+.+++.+||+.||++|||+.|++++
T Consensus 232 ~~~~----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 232 PKNN----------PPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp HHSC----------CCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred hcCC----------CCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 1111 011122234568899999999999999999999874
No 208
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.3e-38 Score=342.75 Aligned_cols=261 Identities=25% Similarity=0.333 Sum_probs=204.8
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +++.||+|++..... .....+.+.+|+.++++++||||++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~---------------~~~~~~~~~~e~~~l~~l~h~~i~~ 69 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSM---------------TEAEKQMLVSEVNLLRELKHPNIVR 69 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTC---------------CHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccC---------------CHHHHHHHHHHHHHHHhcCCCCCCe
Confidence 468899999999999999999975 789999999843211 1123467889999999999999999
Q ss_pred EEEEEe--cCCccEEEEeccCCCChHHHhhhc--CCccCCHHHHHHHHHHHHHHHHHHhcCCCCC-----eEeccCCCCC
Q 002250 707 LYCSIT--SEDSNLLVYEYLPNGSLWDRLHTC--HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRP-----VIHRDVKSSN 777 (947)
Q Consensus 707 l~~~~~--~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~-----ivH~Dlkp~N 777 (947)
+++++. .+...++||||+++++|.+++... ....+++..++.++.|++.||+||| +.+ |+||||||+|
T Consensus 70 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~N 146 (279)
T 2w5a_A 70 YYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPAN 146 (279)
T ss_dssp EEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGG
T ss_pred EEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhh
Confidence 999874 456789999999999999999764 2345899999999999999999999 666 9999999999
Q ss_pred eEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 778 ILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 778 Ill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
|+++.++.+||+|||.++....... ......||+.|+|||++.+..++.++||||||+++|||++|+.||.... ..
T Consensus 147 Il~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~ 222 (279)
T 2w5a_A 147 VFLDGKQNVKLGDFGLARILNHDTS--FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS--QK 222 (279)
T ss_dssp EEECSSSCEEECCCCHHHHC---CH--HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS--HH
T ss_pred EEEcCCCCEEEecCchheeeccccc--cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC--HH
Confidence 9999999999999999976543221 1223468999999999998889999999999999999999999985331 11
Q ss_pred cHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCC
Q 002250 858 DIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPC 923 (947)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~ 923 (947)
.+...+ ... .....+...+..+.+++.+||+.||++|||+.|+++.+....+-
T Consensus 223 ~~~~~i---~~~----------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~ 275 (279)
T 2w5a_A 223 ELAGKI---REG----------KFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHH 275 (279)
T ss_dssp HHHHHH---HHT----------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGG
T ss_pred HHHHHH---hhc----------ccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhc
Confidence 111111 111 11122223446788999999999999999999999987665543
No 209
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.1e-38 Score=343.64 Aligned_cols=260 Identities=23% Similarity=0.315 Sum_probs=195.8
Q ss_pred hhccCCc-ccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-ccccc
Q 002250 628 IDAVKPE-NLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNV 704 (947)
Q Consensus 628 ~~~~~~~-~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~ni 704 (947)
.+.|++. +.||+|+||+||+|+.. +++.||||++... .......+.+|++++.++ +||||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----------------~~~~~~~~~~E~~~l~~~~~h~~i 73 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ-----------------PGHIRSRVFREVEMLYQCQGHRNV 73 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC-----------------SSCCHHHHHHHHHHHHHTCCCTTB
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC-----------------cchhHHHHHHHHHHHHHhcCCCCe
Confidence 4677774 78999999999999954 7999999998421 123456788999999985 79999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++++..++..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 74 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~ 148 (316)
T 2ac3_A 74 LELIEFFEEEDRFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPN 148 (316)
T ss_dssp CCEEEEEEETTEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSS
T ss_pred eeEEEEEeeCCEEEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCC
Confidence 99999999999999999999999999999874 35889999999999999999999 88999999999999999877
Q ss_pred C---eEEeccccceecccCCC-----CcceecccccccccCcccccc-----CCCCCccchHHHHHHHHHHHhCCCCCCC
Q 002250 785 K---PRIADFGLAKIVQTGEA-----GDLTHVIAGTHGYIAPEYAYT-----CKINEKSDVYSFGVVLMELVTGKRPIVP 851 (947)
Q Consensus 785 ~---~kl~DfG~a~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~slGv~l~elltg~~p~~~ 851 (947)
. +||+|||++........ ........||+.|+|||++.. ..++.++|||||||++|||++|+.||..
T Consensus 149 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 228 (316)
T 2ac3_A 149 QVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVG 228 (316)
T ss_dssp SSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcc
Confidence 6 99999999976542211 111123458999999999875 5588999999999999999999999965
Q ss_pred CCCCccc---------HHHHHHhhccccccccccccCCCCc-cCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 852 EFGDSKD---------IVNWVYSKMDSRDSMLTVVDPNISE-ILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 852 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
....... ........+..... .++. .....+..+.+++.+|++.||++|||+.|++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 229 RCGSDCGWDRGEACPACQNMLFESIQEGKY-------EFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp CCCSCSCC----CCHHHHHHHHHHHHHCCC-------CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred cccccccccccccchhHHHHHHHHHhccCc-------ccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 4321100 00001111110000 0000 001234568899999999999999999999984
No 210
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=4.3e-37 Score=339.62 Aligned_cols=257 Identities=20% Similarity=0.274 Sum_probs=199.9
Q ss_pred hccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-ccccce
Q 002250 629 DAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVNVVK 706 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~ 706 (947)
++|++.+.||+|+||+||+|+. .+++.||||++.. .....+.+|+.++++++ ||||++
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~--------------------~~~~~~~~E~~~l~~l~~~~~i~~ 95 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP--------------------VKKKKIKREIKILENLRGGPNIIT 95 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS--------------------CCHHHHHHHHHHHHHHTTSTTBCC
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc--------------------cchHHHHHHHHHHHHcCCCCCEEE
Confidence 6899999999999999999995 4789999999831 23467899999999997 999999
Q ss_pred EEEEEec--CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 707 LYCSITS--EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 707 l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++.. ....++||||+++++|.+++.. +++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 96 ~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~ 167 (330)
T 3nsz_A 96 LADIVKDPVSRTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEH 167 (330)
T ss_dssp EEEEEECTTTCCEEEEEECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTT
T ss_pred eeeeeccCCCCceEEEEeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCC
Confidence 9999988 5667999999999999999864 788899999999999999999 89999999999999999776
Q ss_pred -CeEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Q 002250 785 -KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 785 -~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~ 862 (947)
.+||+|||+++....... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+...
T Consensus 168 ~~~kl~Dfg~a~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~ 244 (330)
T 3nsz_A 168 RKLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRI 244 (330)
T ss_dssp TEEEECCCTTCEECCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHH
T ss_pred CEEEEEeCCCceEcCCCCc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHH
Confidence 899999999987654432 224478999999999877 668999999999999999999999996543222222211
Q ss_pred HHhhcc-------------ccccccccc--------cCCC-CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 863 VYSKMD-------------SRDSMLTVV--------DPNI-SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 863 ~~~~~~-------------~~~~~~~~~--------d~~~-~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
...... ......... .... ..........+.+++.+|++.||++|||+.|++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h 320 (330)
T 3nsz_A 245 AKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH 320 (330)
T ss_dssp HHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred HHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 110000 000000000 0000 11111235678899999999999999999999873
No 211
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=8.7e-37 Score=341.15 Aligned_cols=263 Identities=25% Similarity=0.371 Sum_probs=205.4
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-ccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHV 702 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~ 702 (947)
..+.++|++.+.||+|+||.||+|+.. +|+.||||++.+...... ........+.+.+|+.+++++ +||
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~---------~~~~~~~~~~~~~E~~~l~~l~~hp 160 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLS---------PEQLEEVREATRRETHILRQVAGHP 160 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCC---------HHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccC---------HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455678999999999999999999976 799999999854321100 000112235678999999999 799
Q ss_pred ccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL 782 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 782 (947)
||+++++++......++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 161 ~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~ 235 (365)
T 2y7j_A 161 HIITLIDSYESSSFMFLVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDD 235 (365)
T ss_dssp TBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECT
T ss_pred CEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECC
Confidence 9999999999999999999999999999999863 45899999999999999999999 889999999999999999
Q ss_pred CCCeEEeccccceecccCCCCcceecccccccccCcccccc------CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCc
Q 002250 783 EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT------CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDS 856 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~ 856 (947)
++.+||+|||++........ .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||...
T Consensus 236 ~~~ikl~DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~---- 308 (365)
T 2y7j_A 236 NMQIRLSDFGFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR---- 308 (365)
T ss_dssp TCCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS----
T ss_pred CCCEEEEecCcccccCCCcc---cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC----
Confidence 99999999999987654332 234579999999999863 35888999999999999999999998532
Q ss_pred ccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 857 KDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
................. .+.....+..+.+++.+|++.||++|||+.|++++
T Consensus 309 -~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 309 -RQILMLRMIMEGQYQFS-------SPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp -SHHHHHHHHHHTCCCCC-------HHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred -CHHHHHHHHHhCCCCCC-------CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 11111111111111000 00001223568899999999999999999999873
No 212
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=343.02 Aligned_cols=263 Identities=29% Similarity=0.368 Sum_probs=205.1
Q ss_pred hccCCcccccccCceeEEEEEe-----CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVL-----NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
++|++.+.||+|+||.||+|+. .+++.||||++... .....+.+.+|++++++++|||
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-----------------~~~~~~~~~~E~~~l~~l~h~~ 103 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-----------------TEEHLRDFEREIEILKSLQHDN 103 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC-----------------CSHHHHHHHHHHHHHHTCCCTT
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC-----------------CHHHHHHHHHHHHHHHhCCCCC
Confidence 5688999999999999999984 36889999998421 1123467899999999999999
Q ss_pred cceEEEEEecCC--ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 704 VVKLYCSITSED--SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 704 iv~l~~~~~~~~--~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
|+++++++...+ ..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 104 iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~ 179 (326)
T 2w1i_A 104 IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKH-KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVE 179 (326)
T ss_dssp BCCEEEEECC----CCEEEECCCTTCBHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEE
T ss_pred eeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEc
Confidence 999999987654 679999999999999999874 345899999999999999999999 89999999999999999
Q ss_pred CCCCeEEeccccceecccCCCCc-ceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC-------
Q 002250 782 LEWKPRIADFGLAKIVQTGEAGD-LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEF------- 853 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~------- 853 (947)
.++.+||+|||+++......... ......++..|+|||++.+..++.++||||||+++|||++|..||....
T Consensus 180 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~ 259 (326)
T 2w1i_A 180 NENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMI 259 (326)
T ss_dssp ETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHH
T ss_pred CCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhh
Confidence 99999999999998765443211 1122356788999999998889999999999999999999999874220
Q ss_pred CC--c-ccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 854 GD--S-KDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 854 ~~--~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
.. . ............. ....+.+...+..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~ 321 (326)
T 2w1i_A 260 GNDKQGQMIVFHLIELLKN---------NGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 321 (326)
T ss_dssp CTTCCTHHHHHHHHHHHHT---------TCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHHHhhc---------CCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 00 0 0000000011100 0111223334567889999999999999999999999998764
No 213
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=5.8e-37 Score=334.33 Aligned_cols=254 Identities=26% Similarity=0.332 Sum_probs=202.8
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.++|++.+.||+|+||.||+|+.. +|+.||||++.... ......+.+|+.++++++|||
T Consensus 5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-----------------~~~~~~~~~e~~~l~~l~h~~ 67 (304)
T 2jam_A 5 TNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSP-----------------AFRDSSLENEIAVLKKIKHEN 67 (304)
T ss_dssp -CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-----------------------HHHHHHHHHHHCCCTT
T ss_pred cchhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccc-----------------ccchHHHHHHHHHHHhCCCCC
Confidence 345688999999999999999999965 79999999984211 122356889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe---
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL--- 780 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll--- 780 (947)
|+++++++..++..++||||+++++|.+++... ..+++.....++.|++.||+||| +.+|+||||||+||++
T Consensus 68 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~ 142 (304)
T 2jam_A 68 IVTLEDIYESTTHYYLVMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTP 142 (304)
T ss_dssp BCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSS
T ss_pred eeehhhhcccCCEEEEEEEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecC
Confidence 999999999999999999999999999999764 35889999999999999999999 8899999999999999
Q ss_pred cCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
+.++.+||+|||++...... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ..
T Consensus 143 ~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~ 213 (304)
T 2jam_A 143 EENSKIMITDFGLSKMEQNG----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET-----ES 213 (304)
T ss_dssp STTCCEEBCSCSTTCCCCCB----TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC-----HH
T ss_pred CCCCCEEEccCCcceecCCC----ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC-----HH
Confidence 78899999999999754332 1223468999999999999899999999999999999999999985321 11
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
............. ........+..+.+++.+|++.||++|||+.|++++
T Consensus 214 ~~~~~i~~~~~~~-------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 214 KLFEKIKEGYYEF-------ESPFWDDISESAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp HHHHHHHHCCCCC-------CTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHcCCCCC-------CccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1111111111110 011122334568899999999999999999999863
No 214
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1e-37 Score=338.04 Aligned_cols=263 Identities=25% Similarity=0.367 Sum_probs=198.3
Q ss_pred hccCCcccccccCceeEEEEEeC--CCc--EEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN--SGK--ELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~--~~~--~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
++|++.+.||+|+||+||+|++. +++ .||||++.+... ......+.+.+|+.++++++||||
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~--------------~~~~~~~~~~~e~~~l~~l~h~~i 83 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVL--------------SQPEAMDDFIREVNAMHSLDHRNL 83 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC----------------------CHHHHHHHHHHHHHHHCCCTTB
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCcc--------------CCHHHHHHHHHHHHHHHhCCCCCc
Confidence 67899999999999999999853 333 689998843211 112345678899999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++++..+. .++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 84 ~~~~~~~~~~~-~~~v~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~ 158 (291)
T 1u46_A 84 IRLYGVVLTPP-MKMVTELAPLGSLLDRLRKH-QGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRD 158 (291)
T ss_dssp CCEEEEECSSS-CEEEEECCTTCBHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETT
T ss_pred ccEEEEEccCC-ceeeEecccCCCHHHHHHhc-cCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCC
Confidence 99999998765 88999999999999999864 345899999999999999999999 88999999999999999999
Q ss_pred CeEEeccccceecccCCCCc-ceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGD-LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
.+||+|||++.......... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||... ...+.
T Consensus 159 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~ 233 (291)
T 1u46_A 159 LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-----NGSQI 233 (291)
T ss_dssp EEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHH
T ss_pred CEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC-----CHHHH
Confidence 99999999998765433211 1223457889999999988889999999999999999999 99998532 11222
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCC
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCS 924 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~ 924 (947)
.......... .......+..+.+++.+|++.||++|||+.++++.|+++.+..
T Consensus 234 ~~~~~~~~~~---------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 286 (291)
T 1u46_A 234 LHKIDKEGER---------LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTD 286 (291)
T ss_dssp HHHHHTSCCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred HHHHHccCCC---------CCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccc
Confidence 2221111111 1112234467889999999999999999999999999887643
No 215
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.2e-37 Score=336.82 Aligned_cols=265 Identities=22% Similarity=0.282 Sum_probs=202.3
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
++|++.+.||+|+||.||+|+.. +|+.||||++.... ........+.+|+.++++++||||+++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~e~~~l~~l~h~~i~~~ 67 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDT---------------ETEGVPSTAIREISLLKELNHPNIVKL 67 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC-----------------------CCHHHHHHHHHHTTCCCTTBCCE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCc---------------cchhhHHHHHHHHHHHHHcCCCCeeeE
Confidence 57888999999999999999976 78999999984221 112334678899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++..++..++||||++ ++|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+|
T Consensus 68 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~k 143 (299)
T 2r3i_A 68 LDVIHTENKLYLVFEFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIK 143 (299)
T ss_dssp EEEEEETTEEEEEEECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEE
T ss_pred EEEEecCCceEEEEEccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEE
Confidence 999999999999999997 69999998766567899999999999999999999 88999999999999999999999
Q ss_pred EeccccceecccCCCCcceecccccccccCccccccCC-CCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 788 IADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK-INEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 788 l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
|+|||.+........ ......||+.|+|||++.+.. ++.++||||||+++|||++|+.||..... ...........
T Consensus 144 l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-~~~~~~~~~~~ 220 (299)
T 2r3i_A 144 LADFGLARAFGVPVR--TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE-IDQLFRIFRTL 220 (299)
T ss_dssp ECSTTHHHHHCCCSB--CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHH
T ss_pred ECcchhhhhccCCcc--ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccH-HHHHHHHHHHh
Confidence 999999976543321 112346899999999998765 78999999999999999999999954311 11111111111
Q ss_pred cccccccc--------------ccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 867 MDSRDSML--------------TVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 867 ~~~~~~~~--------------~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
........ ......+..........+.+++.+|++.||++|||+.|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 221 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp CCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCchhhhhHhhcCcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 11000000 00000111111223457889999999999999999999987
No 216
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=7.7e-38 Score=372.92 Aligned_cols=250 Identities=22% Similarity=0.270 Sum_probs=196.4
Q ss_pred ccccccCceeEEEEEeC---CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEEEEE
Q 002250 635 NLIGKGGSGNVYKVVLN---SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLYCSI 711 (947)
Q Consensus 635 ~~iG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 711 (947)
+.||+|+||+||+|.+. .++.||||++... .......+.+.+|++++++++|||||++++++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~---------------~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~ 439 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE---------------ANDPALKDELLAEANVMQQLDNPYIVRMIGIC 439 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGG---------------GGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccc---------------cCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE
Confidence 47999999999999653 4678999998421 11123356799999999999999999999999
Q ss_pred ecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEecc
Q 002250 712 TSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADF 791 (947)
Q Consensus 712 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Df 791 (947)
.. +..++||||+++|+|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+||
T Consensus 440 ~~-~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DF 513 (635)
T 4fl3_A 440 EA-ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDF 513 (635)
T ss_dssp ES-SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCT
T ss_pred ec-CCEEEEEEccCCCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEc
Confidence 75 5688999999999999999763 45899999999999999999999 889999999999999999999999999
Q ss_pred ccceecccCCC-CcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHHHHhhccc
Q 002250 792 GLAKIVQTGEA-GDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNWVYSKMDS 869 (947)
Q Consensus 792 G~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 869 (947)
|+|+....... ........+|+.|+|||++....++.++|||||||++|||++ |+.||.... ...+...+. .
T Consensus 514 Gla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--~~~~~~~i~----~ 587 (635)
T 4fl3_A 514 GLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK--GSEVTAMLE----K 587 (635)
T ss_dssp THHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC--HHHHHHHHH----T
T ss_pred CCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH----c
Confidence 99987654332 112223456789999999999999999999999999999999 999985321 112222111 1
Q ss_pred cccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 870 RDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 870 ~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
.. ....+..++..+.+++.+||+.||++|||+.++++.|+++
T Consensus 588 ~~---------~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~ 629 (635)
T 4fl3_A 588 GE---------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 629 (635)
T ss_dssp TC---------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CC---------CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 11 1122334456789999999999999999999999999864
No 217
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-37 Score=347.02 Aligned_cols=262 Identities=19% Similarity=0.268 Sum_probs=195.6
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|... +|+.||||++.... ......+.+.+|+++++.++||||+
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~hpnIv 87 (367)
T 1cm8_A 23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPF---------------QSELFAKRAYRELRLLKHMRHENVI 87 (367)
T ss_dssp CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTT---------------SSHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccc---------------cCHHHHHHHHHHHHHHHhCCCcCCC
Confidence 3578999999999999999999965 79999999984211 1112345688999999999999999
Q ss_pred eEEEEEecCC------ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 706 KLYCSITSED------SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 706 ~l~~~~~~~~------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
++++++..++ ..|+||||+ +++|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIl 160 (367)
T 1cm8_A 88 GLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLA 160 (367)
T ss_dssp CCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEE
T ss_pred CceeeEecCCccccCceEEEEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEE
Confidence 9999998764 459999999 8899999986 35889999999999999999999 899999999999999
Q ss_pred ecCCCCeEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 780 LDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 780 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
++.++.+||+|||+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...
T Consensus 161 l~~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~ 234 (367)
T 1cm8_A 161 VNEDCELKILDFGLARQADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH-LDQ 234 (367)
T ss_dssp ECTTCCEEECCCTTCEECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH-HHH
T ss_pred EcCCCCEEEEeeecccccccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCH-HHH
Confidence 999999999999999875432 223568999999999887 6799999999999999999999999954311 000
Q ss_pred HHHHHHhhccccc----------------cccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 859 IVNWVYSKMDSRD----------------SMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 859 ~~~~~~~~~~~~~----------------~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+............ .+.......+..........+.+++.+|+..||++|||+.|++++
T Consensus 235 l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h 308 (367)
T 1cm8_A 235 LKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH 308 (367)
T ss_dssp HHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence 1111000000000 000001111222233445678899999999999999999999984
No 218
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=3.2e-37 Score=334.63 Aligned_cols=252 Identities=22% Similarity=0.269 Sum_probs=204.4
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|.+.+.||+|+||.||+|... +++.||+|++.... .......+.+.+|+.++++++||||++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--------------~~~~~~~~~~~~e~~~l~~l~h~~iv~ 79 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSL--------------LLKPHQREKMSMEISIHRSLAHQHVVG 79 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--------------CCSHHHHHHHHHHHHHHHTCCCTTBCC
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhh--------------ccCHHHHHHHHHHHHHHHhCCCCCEee
Confidence 468999999999999999999976 58899999984211 011123467889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 80 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~ 154 (294)
T 2rku_A 80 FHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEV 154 (294)
T ss_dssp EEEEEECSSEEEEEEECCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCE
T ss_pred eeeeeccCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCE
Confidence 999999999999999999999999998763 35889999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||.+........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+.....
T Consensus 155 kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~ 227 (294)
T 2rku_A 155 KIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----CLKETYLRI 227 (294)
T ss_dssp EECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHH
T ss_pred EEEeccCceecccCcc--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHH
Confidence 9999999987643322 122456899999999999888999999999999999999999998532 112211111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
..... ..+......+.+++.+|++.||++|||+.|++++
T Consensus 228 ~~~~~-----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 228 KKNEY-----------SIPKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp HTTCC-----------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred hhccC-----------CCccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 11111 1111233567889999999999999999999974
No 219
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=8.5e-37 Score=355.76 Aligned_cols=256 Identities=26% Similarity=0.325 Sum_probs=200.6
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.+.|++.+.||+|+||+||+|+.. +++.||||++.... ........+.+|+.+++.++|||
T Consensus 33 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~hpn 97 (494)
T 3lij_A 33 GHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTS---------------VSTSSNSKLLEEVAVLKLLDHPN 97 (494)
T ss_dssp CCHHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC--------------------CTTHHHHHHHHHHTTCCCTT
T ss_pred CchhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccc---------------cCchHHHHHHHHHHHHHhCCCCC
Confidence 456688999999999999999999976 78999999984321 11233567889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC-
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL- 782 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~- 782 (947)
|+++++++..+...|+||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 98 iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~ 172 (494)
T 3lij_A 98 IMKLYDFFEDKRNYYLVMECYKGGELFDEIIHR--MKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESK 172 (494)
T ss_dssp BCCEEEEEECSSEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCS
T ss_pred CCeEEEEEEeCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCC
Confidence 999999999999999999999999999998764 45889999999999999999999 889999999999999976
Q ss_pred --CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 783 --EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 783 --~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
++.+||+|||+++....... .....||+.|+|||++. +.++.++||||+||++|||++|+.||... ...
T Consensus 173 ~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~ 243 (494)
T 3lij_A 173 EKDALIKIVDFGLSAVFENQKK---MKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQ-----TDQ 243 (494)
T ss_dssp STTCCEEECCCTTCEECBTTBC---BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHH
T ss_pred CCCCcEEEEECCCCeECCCCcc---ccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCC-----CHH
Confidence 45599999999987654432 23457999999999876 56999999999999999999999999532 112
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+............. .+.....+..+.+++.+|++.||.+|||+.|++++
T Consensus 244 ~~~~~i~~~~~~~~-------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 244 EILRKVEKGKYTFD-------SPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp HHHHHHHHTCCCCC-------SGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred HHHHHHHhCCCCCC-------chhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 22222111111100 11112234568889999999999999999999853
No 220
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=5.4e-37 Score=332.18 Aligned_cols=250 Identities=26% Similarity=0.355 Sum_probs=196.1
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
+.|++.+.||+|+||+||+|... ++..||+|++... .......+.+.+|+.++++++||||+++
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~---------------~~~~~~~~~~~~e~~~l~~l~h~~iv~~ 90 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDR---------------KLTKSERQRFKEEAEMLKGLQHPNIVRF 90 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGG---------------GSCHHHHHHHHHHHHHHTTCCCTTBCCE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecch---------------hhCHHHHHHHHHHHHHHHhCCCCCeeee
Confidence 45778889999999999999965 6889999998421 1112234678899999999999999999
Q ss_pred EEEEec----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEeccCCCCCeEec
Q 002250 708 YCSITS----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRP--VIHRDVKSSNILLD 781 (947)
Q Consensus 708 ~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~--ivH~Dlkp~NIll~ 781 (947)
++++.. ....++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+ |+||||||+||+++
T Consensus 91 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~ 165 (290)
T 1t4h_A 91 YDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFIT 165 (290)
T ss_dssp EEEEEEESSSCEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEES
T ss_pred eeeeccccCCCceEEEEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEE
Confidence 999865 34578999999999999999864 45889999999999999999999 777 99999999999998
Q ss_pred -CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 782 -LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 782 -~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
.++.+||+|||++....... .....||+.|+|||++. +.++.++||||+|+++|||++|+.||... ....
T Consensus 166 ~~~~~~kl~Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~----~~~~ 236 (290)
T 1t4h_A 166 GPTGSVKIGDLGLATLKRASF----AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSEC----QNAA 236 (290)
T ss_dssp STTSCEEECCTTGGGGCCTTS----BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTC----SSHH
T ss_pred CCCCCEEEeeCCCcccccccc----cccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCc----CcHH
Confidence 78999999999997543322 23456899999999876 46899999999999999999999998532 1222
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
............ ..........+.+++.+||+.||++|||+.|++++
T Consensus 237 ~~~~~~~~~~~~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 237 QIYRRVTSGVKP---------ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp HHHHHHTTTCCC---------GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHhccCCc---------cccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 221111111110 11111223468899999999999999999999863
No 221
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.6e-37 Score=343.29 Aligned_cols=271 Identities=20% Similarity=0.255 Sum_probs=197.5
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
...++|++.+.||+|+||.||+|+.. +|+.||||++...... .........+.+|++++++++||||
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~------------~~~~~~~~~~~~E~~~l~~l~h~~i 74 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRS------------EAKDGINRTALREIKLLQELSHPNI 74 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------------------CTHHHHHHHHHHHCCCTTB
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcc------------hhhhhhhHHHHHHHHHHhhCCCCCC
Confidence 34578999999999999999999965 6899999998432110 0111223568899999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++++..++..++||||+++ +|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 75 v~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~ 149 (346)
T 1ua2_A 75 IGLLDAFGHKSNISLVFDFMET-DLEVIIKDN-SLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENG 149 (346)
T ss_dssp CCEEEEECCTTCCEEEEECCSE-EHHHHHTTC-CSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTC
T ss_pred CeEEEEEeeCCceEEEEEcCCC-CHHHHHHhc-CcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCC
Confidence 9999999999999999999975 898888763 345788889999999999999999 89999999999999999999
Q ss_pred CeEEeccccceecccCCCCcceecccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
.+||+|||+++....... ......||+.|+|||++.+. .++.++|||||||++|||++|..||.... ....+....
T Consensus 150 ~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~-~~~~~~~i~ 226 (346)
T 1ua2_A 150 VLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDS-DLDQLTRIF 226 (346)
T ss_dssp CEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHH
T ss_pred CEEEEecccceeccCCcc--cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCC-HHHHHHHHH
Confidence 999999999986543322 22245789999999998764 48899999999999999999999885331 111111111
Q ss_pred Hhhccc-cccccccc---c----CCCCc-----cCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 864 YSKMDS-RDSMLTVV---D----PNISE-----ILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 864 ~~~~~~-~~~~~~~~---d----~~~~~-----~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
...... ...+.... + ...+. ........+.+++.+|++.||++|||+.|++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 227 ETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp HHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred HHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 111110 00000000 0 00111 112334678999999999999999999999975
No 222
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1.2e-37 Score=343.54 Aligned_cols=267 Identities=19% Similarity=0.228 Sum_probs=192.6
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
....++|++.+.||+|+||+||+|+.. +++.||||++.... ........+.+|+.++++++|||
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~ 94 (329)
T 3gbz_A 30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEH---------------EEEGVPGTAIREVSLLKELQHRN 94 (329)
T ss_dssp --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC-----------------------CHHHHHHGGGCCCTT
T ss_pred ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccc---------------cccccchhHHHHHHHHHHcCCCC
Confidence 344688999999999999999999955 78999999984221 11123456778999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec--
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD-- 781 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~-- 781 (947)
|+++++++..++..++||||++ |+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 95 iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~ 168 (329)
T 3gbz_A 95 IIELKSVIHHNHRLHLIFEYAE-NDLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVS 168 (329)
T ss_dssp BCCEEEEEEETTEEEEEEECCS-EEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-
T ss_pred cceEEEEEecCCEEEEEEecCC-CCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecC
Confidence 9999999999999999999997 59999998743 4889999999999999999999 88999999999999994
Q ss_pred ---CCCCeEEeccccceecccCCCCcceecccccccccCccccccCC-CCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 782 ---LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK-INEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 782 ---~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
.++.+||+|||+++....... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||..... ..
T Consensus 169 ~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~ 245 (329)
T 3gbz_A 169 DASETPVLKIGDFGLARAFGIPIR--QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSE-ID 245 (329)
T ss_dssp ----CCEEEECCTTHHHHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HH
T ss_pred CCCccceEEECcCCCccccCCccc--ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCH-HH
Confidence 445699999999986543321 122446899999999998754 89999999999999999999999854311 11
Q ss_pred cHHHHHHhhccccc-ccccc-----ccCCCCc---------cCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 858 DIVNWVYSKMDSRD-SMLTV-----VDPNISE---------ILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 858 ~~~~~~~~~~~~~~-~~~~~-----~d~~~~~---------~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.+............ .+... .....+. ........+.+++.+|++.||++|||+.|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 246 QLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp HHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 11111111100000 00000 0000000 01113356789999999999999999999986
No 223
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=2.8e-37 Score=359.41 Aligned_cols=255 Identities=27% Similarity=0.351 Sum_probs=205.5
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
.+.++|++.+.||+|+||+||+|+.. +++.||||++..... ........+.+|+.++++++||||
T Consensus 23 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------------~~~~~~~~~~~E~~~l~~l~hpni 88 (484)
T 3nyv_A 23 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQV--------------KQKTDKESLLREVQLLKQLDHPNI 88 (484)
T ss_dssp CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--------------CBSSCHHHHHHHHHHHTTCCCTTB
T ss_pred cccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhc--------------ccchHHHHHHHHHHHHHhCCCCCC
Confidence 45678999999999999999999976 799999999843211 112445778999999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe---c
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL---D 781 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll---~ 781 (947)
+++++++...+..++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||++ +
T Consensus 89 v~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~ 163 (484)
T 3nyv_A 89 MKLYEFFEDKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKS 163 (484)
T ss_dssp CCEEEEEECSSEEEEEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSS
T ss_pred CcEEEEEEeCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCC
Confidence 99999999999999999999999999999864 45899999999999999999999 8899999999999999 5
Q ss_pred CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Q 002250 782 LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVN 861 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~ 861 (947)
.++.+||+|||+++....... .....||+.|+|||++.+ .++.++||||+||++|||++|+.||... ...+
T Consensus 164 ~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~ 234 (484)
T 3nyv_A 164 KDANIRIIDFGLSTHFEASKK---MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGA-----NEYD 234 (484)
T ss_dssp TTCCEEECCTTHHHHBCCCCS---HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHH
T ss_pred CCCcEEEEeeeeeEEcccccc---cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCC-----CHHH
Confidence 678999999999986654332 234579999999998865 6999999999999999999999999532 1222
Q ss_pred HHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 862 WVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 862 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
............ . .+.....+..+.+++.+|++.||.+|||+.|+++
T Consensus 235 ~~~~i~~~~~~~------~-~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 235 ILKKVEKGKYTF------E-LPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HHHHHHHCCCCC------C-SGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCCCC------C-CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 222111111110 0 1111233456889999999999999999999985
No 224
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=4.6e-37 Score=330.14 Aligned_cols=251 Identities=24% Similarity=0.349 Sum_probs=195.9
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|... +|+.||||++... ..........+.+|+.++++++||||++
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--------------~~~~~~~~~~~~~e~~~l~~l~h~~i~~ 75 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQ--------------KIRSLDVVGKIKREIQNLKLFRHPHIIK 75 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHH--------------HHHHTTCHHHHHHHHHHHHTCCCTTBCC
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccc--------------cccchhHHHHHHHHHHHHhcCCCCCEeE
Confidence 367899999999999999999976 7999999998311 1112234567899999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 76 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~ 150 (276)
T 2h6d_A 76 LYQVISTPTDFFMVMEYVSGGELFDYICKH--GRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNA 150 (276)
T ss_dssp EEEEEECSSEEEEEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCE
T ss_pred EEEEEecCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCE
Confidence 999999999999999999999999999864 35889999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||++........ .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||... ........
T Consensus 151 ~l~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~ 222 (276)
T 2h6d_A 151 KIADFGLSNMMSDGEF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE-----HVPTLFKK 222 (276)
T ss_dssp EECCCCGGGCCCC----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEeecccccccCCCcc---eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC-----cHHHHHHH
Confidence 9999999976544322 223468999999999987765 58999999999999999999998532 12221111
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
...... ..+......+.+++.+|++.||++|||+.|++++
T Consensus 223 ~~~~~~-----------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 223 IRGGVF-----------YIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp HHHCCC-----------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred hhcCcc-----------cCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 111110 1112234567889999999999999999999974
No 225
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=5.1e-37 Score=350.24 Aligned_cols=201 Identities=22% Similarity=0.300 Sum_probs=173.9
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc----
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV---- 699 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---- 699 (947)
+.+..+|++.+.||+|+||+||+|... +++.||||++... ......+.+|+++++.+
T Consensus 93 ~~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~------------------~~~~~~~~~E~~~l~~l~~~~ 154 (429)
T 3kvw_A 93 DHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE------------------KRFHRQAAEEIRILEHLRKQD 154 (429)
T ss_dssp CEETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC------------------HHHHHHHHHHHHHHHHHHTTC
T ss_pred CcccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc------------------cchHHHHHHHHHHHHHHhhcc
Confidence 445678999999999999999999865 6899999998311 12235677888888887
Q ss_pred --cccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCC
Q 002250 700 --RHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSN 777 (947)
Q Consensus 700 --~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~N 777 (947)
+|+||+++++++......++||||++ ++|.+++.......+++..+..++.||+.||+||| +.+|+||||||+|
T Consensus 155 ~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~N 230 (429)
T 3kvw_A 155 KDNTMNVIHMLENFTFRNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPEN 230 (429)
T ss_dssp TTSCSCBCCEEEEEEETTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGG
T ss_pred ccCCcCEEEEEeecccCCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHH
Confidence 56799999999999999999999995 69999998866667999999999999999999999 7899999999999
Q ss_pred eEecCCCC--eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCC
Q 002250 778 ILLDLEWK--PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPE 852 (947)
Q Consensus 778 Ill~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~ 852 (947)
||++.++. +||+|||+|+...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 231 ILl~~~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 231 ILLKQQGRSGIKVIDFGSSCYEHQRV-----YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp EEESSTTSCCEEECCCTTCEETTCCC-----CSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eEEccCCCcceEEeecccceecCCcc-----cccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 99999887 9999999997654322 2347899999999999999999999999999999999999998543
No 226
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=3.3e-37 Score=340.84 Aligned_cols=252 Identities=23% Similarity=0.272 Sum_probs=204.3
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|.+.+.||+|+||.||+|+.. +++.||+|++.... .......+.+.+|+.++++++||||++
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--------------~~~~~~~~~~~~E~~~l~~l~h~~iv~ 105 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSL--------------LLKPHQREKMSMEISIHRSLAHQHVVG 105 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG--------------CCSHHHHHHHHHHHHHHHTCCCTTBCC
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhh--------------hcCHHHHHHHHHHHHHHHhCCCCCCCe
Confidence 468999999999999999999976 58899999983211 011123467889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++.+++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 106 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~ 180 (335)
T 2owb_A 106 FHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEV 180 (335)
T ss_dssp EEEEEECSSEEEEEECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCE
T ss_pred EEEEEecCCeEEEEEecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCE
Confidence 999999999999999999999999998763 45899999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSK 866 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~ 866 (947)
||+|||+++....... ......||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+.....
T Consensus 181 kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~ 253 (335)
T 2owb_A 181 KIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----CLKETYLRI 253 (335)
T ss_dssp EECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHH
T ss_pred EEeeccCceecccCcc--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC-----CHHHHHHHH
Confidence 9999999987643322 123456899999999999888999999999999999999999998532 112211111
Q ss_pred ccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 867 MDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 867 ~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
...... .+......+.+++.+||+.||++|||+.|++++
T Consensus 254 ~~~~~~-----------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 254 KKNEYS-----------IPKHINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp HHTCCC-----------CCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred hcCCCC-----------CCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 111111 111223467889999999999999999999863
No 227
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=4.2e-37 Score=355.35 Aligned_cols=198 Identities=26% Similarity=0.350 Sum_probs=154.3
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||+||+|+.. +++.||||++.... ......+.+.+|++++++++||||+
T Consensus 51 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~---------------~~~~~~~~~~~E~~~l~~l~h~niv 115 (458)
T 3rp9_A 51 IPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVF---------------EDLIDCKRILREIAILNRLNHDHVV 115 (458)
T ss_dssp SCTTEEECCC-------CEEEEEECC--CEEEEEEECSTT---------------SSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred cCCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhh---------------cCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 3478999999999999999999965 78999999984211 1112346788999999999999999
Q ss_pred eEEEEEecC-----CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 706 KLYCSITSE-----DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 706 ~l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
++++++... ...|+||||+ +++|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+|||+
T Consensus 116 ~l~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl 189 (458)
T 3rp9_A 116 KVLDIVIPKDVEKFDELYVVLEIA-DSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLV 189 (458)
T ss_dssp CEEEECCCSCTTTCCCEEEEECCC-SEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEE
T ss_pred ceEEEEecCCcccCceEEEEEecc-ccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEE
Confidence 999999543 5679999998 57999998763 45899999999999999999999 8899999999999999
Q ss_pred cCCCCeEEeccccceecccCCCC-------------------------cceecccccccccCcccc-ccCCCCCccchHH
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAG-------------------------DLTHVIAGTHGYIAPEYA-YTCKINEKSDVYS 834 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~s 834 (947)
+.++.+||+|||+|+........ ......+||+.|+|||++ ....++.++||||
T Consensus 190 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwS 269 (458)
T 3rp9_A 190 NQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWS 269 (458)
T ss_dssp CTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHH
T ss_pred CCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHH
Confidence 99999999999999876432211 112345789999999986 4566999999999
Q ss_pred HHHHHHHHHhC
Q 002250 835 FGVVLMELVTG 845 (947)
Q Consensus 835 lGv~l~elltg 845 (947)
|||++|||++|
T Consensus 270 lG~il~elltg 280 (458)
T 3rp9_A 270 IGCIFAELLNM 280 (458)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999999994
No 228
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.8e-37 Score=348.09 Aligned_cols=260 Identities=20% Similarity=0.265 Sum_probs=194.2
Q ss_pred HhhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
..++|++.+.||+|+||+||+|+. .+|+.||||++... .....+|+++++.++||||+
T Consensus 5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~---------------------~~~~~~E~~il~~l~hpnIv 63 (383)
T 3eb0_A 5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD---------------------PRYKNRELDIMKVLDHVNII 63 (383)
T ss_dssp -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECC---------------------TTSCCHHHHHHTTCCCTTBC
T ss_pred ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecC---------------------cchHHHHHHHHHHcCCCCcc
Confidence 346899999999999999999996 47999999998421 12234799999999999999
Q ss_pred eEEEEEecC--------------------------------------CccEEEEeccCCCChHHHhhhc--CCccCCHHH
Q 002250 706 KLYCSITSE--------------------------------------DSNLLVYEYLPNGSLWDRLHTC--HKIEMDWVV 745 (947)
Q Consensus 706 ~l~~~~~~~--------------------------------------~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~ 745 (947)
++++++... ...++||||++ |+|.+.+... ....+++..
T Consensus 64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~ 142 (383)
T 3eb0_A 64 KLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNL 142 (383)
T ss_dssp CEEEEEEEC-------------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHH
T ss_pred chhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHH
Confidence 999998543 33789999997 5888877642 345789999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec-CCCCeEEeccccceecccCCCCcceecccccccccCccccccC
Q 002250 746 RYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD-LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC 824 (947)
Q Consensus 746 ~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~-~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 824 (947)
+..++.|++.||+||| +.+|+||||||+||+++ .++.+||+|||+|+....... .....||+.|+|||++.+.
T Consensus 143 ~~~i~~qi~~aL~~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~ 216 (383)
T 3eb0_A 143 ISIYIYQLFRAVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGA 216 (383)
T ss_dssp HHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCC
Confidence 9999999999999999 89999999999999998 688999999999987654432 2234689999999998775
Q ss_pred C-CCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhcccc--------ccccccccCCC------CccCHHHH
Q 002250 825 K-INEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKMDSR--------DSMLTVVDPNI------SEILKEDA 889 (947)
Q Consensus 825 ~-~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~~------~~~~~~~~ 889 (947)
. ++.++||||+||++|||++|+.||.... ....+...+....... .......-+.. ..++...+
T Consensus 217 ~~~~~~~DiwslG~il~ell~g~~pf~~~~-~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (383)
T 3eb0_A 217 TEYTPSIDLWSIGCVFGELILGKPLFSGET-SIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTP 295 (383)
T ss_dssp SSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCC
T ss_pred CCCCcchhhhhHHHHHHHHHhCCCCCCCCC-hHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCC
Confidence 4 8999999999999999999999995431 1111111111100000 00000000000 11222345
Q ss_pred HHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 890 LKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 890 ~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
..+.+++.+|++.||++|||+.|+++
T Consensus 296 ~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 296 SLAIDLLEQILRYEPDLRINPYEAMA 321 (383)
T ss_dssp HHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHccCChhhCCCHHHHhc
Confidence 56889999999999999999999984
No 229
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=5.7e-37 Score=338.08 Aligned_cols=273 Identities=23% Similarity=0.289 Sum_probs=207.5
Q ss_pred hhccCCcccccccCceeEEEEEe--CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc---ccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL--NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV---RHV 702 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~ 702 (947)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .......+.+|+.+++.+ +||
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~---------------~~~~~~~~~~e~~~l~~l~~~~h~ 74 (326)
T 1blx_A 10 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTG---------------EEGMPLSTIREVAVLRHLETFEHP 74 (326)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBC---------------TTSCBCTHHHHHHHHHHHHHTCCT
T ss_pred hhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcc---------------cccCCchhhHHHHHHHhhhccCCC
Confidence 46899999999999999999997 3688999999842211 112234567888888777 799
Q ss_pred ccceEEEEEe-----cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCC
Q 002250 703 NVVKLYCSIT-----SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSN 777 (947)
Q Consensus 703 niv~l~~~~~-----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~N 777 (947)
||+++++++. .....++||||++ |+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+|
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~N 150 (326)
T 1blx_A 75 NVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQN 150 (326)
T ss_dssp TBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGG
T ss_pred CeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHH
Confidence 9999999987 5567799999997 69999998766666899999999999999999999 8899999999999
Q ss_pred eEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 778 ILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 778 Ill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
|+++.++.+||+|||.++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||.... ..
T Consensus 151 ili~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~ 225 (326)
T 1blx_A 151 ILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS--DV 225 (326)
T ss_dssp EEECTTCCEEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HH
T ss_pred eEEcCCCCEEEecCcccccccCCC---CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC--HH
Confidence 999999999999999997654322 1224568999999999999899999999999999999999999985431 11
Q ss_pred cHHHHHHhhccc--cccc-----------cccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH--hhccCC
Q 002250 858 DIVNWVYSKMDS--RDSM-----------LTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM--LEEAEP 922 (947)
Q Consensus 858 ~~~~~~~~~~~~--~~~~-----------~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~--L~~~~~ 922 (947)
+....+...... ...+ .......+.......+..+.+++.+|++.||++|||+.|++++ +++...
T Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~ 305 (326)
T 1blx_A 226 DQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER 305 (326)
T ss_dssp HHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred HHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccch
Confidence 111111111000 0000 0000011122233445678899999999999999999999953 666665
Q ss_pred CC
Q 002250 923 CS 924 (947)
Q Consensus 923 ~~ 924 (947)
+.
T Consensus 306 ~~ 307 (326)
T 1blx_A 306 CK 307 (326)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 230
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=6.6e-37 Score=351.95 Aligned_cols=260 Identities=20% Similarity=0.257 Sum_probs=204.7
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc-cccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH-VNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv 705 (947)
.++|++.+.||+|+||.||+|+. .+++.||||++... .....+.+|+++++.++| +++.
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~-------------------~~~~~~~~E~~il~~L~~~~~i~ 66 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVK-------------------TKHPQLLYESKIYRILQGGTGIP 66 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETT-------------------CSSCCHHHHHHHHHHTTTSTTCC
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccc-------------------cccHHHHHHHHHHHHhcCCCCCC
Confidence 47899999999999999999996 47999999987311 223458899999999987 5566
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe---cC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL---DL 782 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll---~~ 782 (947)
.+..++...+..++||||+ +++|.+++... ...+++..++.++.||+.||+||| +.+|+||||||+|||+ +.
T Consensus 67 ~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~-~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~ 141 (483)
T 3sv0_A 67 NVRWFGVEGDYNVLVMDLL-GPSLEDLFNFC-SRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRR 141 (483)
T ss_dssp CEEEEEEETTEEEEEEECC-CCBHHHHHHHT-TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGG
T ss_pred eEEEEEeeCCEEEEEEECC-CCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCC
Confidence 6666777788889999999 99999999863 346899999999999999999999 8899999999999999 58
Q ss_pred CCCeEEeccccceecccCCCCc-----ceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCc-
Q 002250 783 EWKPRIADFGLAKIVQTGEAGD-----LTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDS- 856 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~- 856 (947)
++.+||+|||+++......... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 142 ~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~ 221 (483)
T 3sv0_A 142 ANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTK 221 (483)
T ss_dssp TTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSH
T ss_pred CCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhH
Confidence 8999999999998766543321 1224579999999999999999999999999999999999999996532211
Q ss_pred ccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 857 KDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
........... ....+.......+.++.+++..||+.+|++||++.++++.|+++
T Consensus 222 ~~~~~~i~~~~---------~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 222 KQKYEKISEKK---------VATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp HHHHHHHHHHH---------HHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcc---------ccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 11111111000 00111111122345789999999999999999999999999875
No 231
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=3.7e-37 Score=338.71 Aligned_cols=262 Identities=24% Similarity=0.339 Sum_probs=199.5
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.++|++.+.||+|+||.||+|+.. +++.||||++........ ..........+.+|++++++++|||
T Consensus 6 ~~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~---------~~~~~~~~~~~~~E~~~l~~l~h~~ 76 (322)
T 2ycf_A 6 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIG---------SAREADPALNVETEIEILKKLNHPC 76 (322)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC------------------------CHHHHHHHHHHCCCTT
T ss_pred hhhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhc---------ccccchhhhhHHHHHHHHHhCCCCC
Confidence 556789999999999999999999965 689999999853321100 0111123456889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..+. .++||||+++++|.+++... ..+++.....++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 77 i~~~~~~~~~~~-~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~ 150 (322)
T 2ycf_A 77 IIKIKNFFDAED-YYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQ 150 (322)
T ss_dssp BCCEEEEEESSS-EEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSS
T ss_pred CceEeeEEcCCc-eEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecC
Confidence 999999997665 89999999999999999763 46899999999999999999999 8999999999999999876
Q ss_pred CC---eEEeccccceecccCCCCcceecccccccccCccccc---cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 784 WK---PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY---TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 784 ~~---~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
+. +||+|||+++...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||..... ..
T Consensus 151 ~~~~~~kl~Dfg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~ 226 (322)
T 2ycf_A 151 EEDCLIKITDFGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT-QV 226 (322)
T ss_dssp SSSCCEEECCCTTCEECCCCH---HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC-SS
T ss_pred CCCCeEEEccCccceeccccc---ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch-HH
Confidence 54 9999999998764322 122446899999999974 45688999999999999999999999964322 12
Q ss_pred cHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 858 DIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.+....... ... ..++.....+..+.+++.+|++.||++|||+.|+++
T Consensus 227 ~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 227 SLKDQITSG---KYN-------FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp CHHHHHHHT---CCC-------CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHHHHhC---ccc-------cCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 222222111 000 011111223456889999999999999999999985
No 232
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=9.6e-37 Score=365.99 Aligned_cols=251 Identities=25% Similarity=0.283 Sum_probs=204.3
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv 705 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++... ........+.+..|..++..+ +||+|+
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~--------------~~~~~~~~~~~~~E~~~l~~~~~~~~i~ 405 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKD--------------VVIQDDDVECTMVEKRVLALPGKPPFLT 405 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHH--------------HHHHTTTTHHHHHHHHHHTCTTCCTTBC
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEecc--------------ccccHHHHHHHHHHHHHHHhccCCCeEE
Confidence 467899999999999999999966 6889999998311 111234456788899999988 799999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++.+.+..|+||||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.
T Consensus 406 ~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ 480 (674)
T 3pfq_A 406 QLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGH 480 (674)
T ss_dssp CEEEECBCSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSC
T ss_pred EEEEEEEeCCEEEEEEeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCc
Confidence 99999999999999999999999999998743 5899999999999999999999 899999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+|||+|+....... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||... +..+....
T Consensus 481 ikL~DFGla~~~~~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~-----~~~~~~~~ 553 (674)
T 3pfq_A 481 IKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQS 553 (674)
T ss_dssp EEECCCTTCEECCCTTC--CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHH
T ss_pred EEEeecceeeccccCCc--ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC-----CHHHHHHH
Confidence 99999999986433222 233567999999999999999999999999999999999999999532 22222222
Q ss_pred hccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCH-----HHHHH
Q 002250 866 KMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSM-----RVVVQ 915 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~-----~ev~~ 915 (947)
...... .++......+.+++.+|++.||++||++ .||.+
T Consensus 554 i~~~~~-----------~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 554 IMEHNV-----------AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp HHSSCC-----------CCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred HHhCCC-----------CCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 222211 1222344568889999999999999997 66653
No 233
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=354.37 Aligned_cols=325 Identities=18% Similarity=0.185 Sum_probs=237.2
Q ss_pred CEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCcc
Q 002250 185 QNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQ 264 (947)
Q Consensus 185 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~ 264 (947)
+.++.++++++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----------------------- 67 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI----------------------- 67 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-----------------------
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-----------------------
Confidence 34555555554 3343332 345555555555554444444444444444444333
Q ss_pred CcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCcc
Q 002250 265 FSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPET 344 (947)
Q Consensus 265 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~ 344 (947)
+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.++ +..|..
T Consensus 68 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------------------------~~~~~~ 123 (477)
T 2id5_A 68 VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV------------------------ILLDYM 123 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC------------------------EECTTT
T ss_pred cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc------------------------cCChhH
Confidence 33333444444444444444444444333333444444444444444443 334455
Q ss_pred ccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcce
Q 002250 345 YANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLV 424 (947)
Q Consensus 345 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 424 (947)
|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 66677777888888888777777888888899999999998887777888999999999999999988888999999999
Q ss_pred EEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCc
Q 002250 425 SIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNK 504 (947)
Q Consensus 425 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 504 (947)
.|++++|.+.+.+|..+....+|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 99999999888888887778899999999999997666789999999999999999998888999999999999999999
Q ss_pred cCCccCCccc-ccccceeeCCCCcCCCCCCCccc--ccccccccccCCCCCCCCcccc
Q 002250 505 FSGEIPISLT-YPKLSLLDLSNNQLAGPIPEPLN--IKAFIDSFTGNPGLCSKTDEYF 559 (947)
Q Consensus 505 l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~~~~--~~~~~~~~~gN~~~c~~~~~~~ 559 (947)
+++..|..+. +++|+.|+|++|+|++.++..+. .......+.+|||.|+|...|+
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~ 341 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV 341 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH
Confidence 9999887775 69999999999999987776553 2334557899999999998775
No 234
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=333.29 Aligned_cols=252 Identities=26% Similarity=0.348 Sum_probs=198.7
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
...+.|++.+.||+|+||.||+|... +|+.||||++.. ......+.+|+.++++++||||
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~-------------------~~~~~~~~~e~~~l~~l~h~~i 86 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV-------------------ESDLQEIIKEISIMQQCDSPHV 86 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEET-------------------TSCCHHHHHHHHHHHTCCCTTB
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCc-------------------hHHHHHHHHHHHHHHhCCCCCC
Confidence 34577999999999999999999976 689999999832 1234678899999999999999
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW 784 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~ 784 (947)
+++++++..++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 87 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~ 162 (314)
T 3com_A 87 VKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLR-NKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEG 162 (314)
T ss_dssp CCEEEEEEETTEEEEEEECCTTEEHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC
T ss_pred ccEEEEEEeCCEEEEEeecCCCCCHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCC
Confidence 99999999999999999999999999999742 346899999999999999999999 89999999999999999999
Q ss_pred CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Q 002250 785 KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVY 864 (947)
Q Consensus 785 ~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~ 864 (947)
.+||+|||.+........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||.... ......
T Consensus 163 ~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~ 235 (314)
T 3com_A 163 HAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH-----PMRAIF 235 (314)
T ss_dssp CEEECCCTTCEECBTTBS--CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC-----HHHHHH
T ss_pred CEEEeecccchhhhhhcc--ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC-----hHHHHH
Confidence 999999999987654322 1224468999999999999899999999999999999999999985321 111111
Q ss_pred hhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 865 SKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 865 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
....... +.. ..+...+..+.+++.+|++.||.+|||+.++++
T Consensus 236 ~~~~~~~-------~~~-~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 236 MIPTNPP-------PTF-RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHHHSCC-------CCC-SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHhcCCC-------ccc-CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 1111110 000 111223456889999999999999999999986
No 235
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=9e-37 Score=340.01 Aligned_cols=267 Identities=19% Similarity=0.240 Sum_probs=200.1
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.. +|+.||||++.... ........+.+|++++++++||||++
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~iv~ 80 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMEN---------------EKEGFPITALREIKILQLLKHENVVN 80 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSS---------------CSSSSCHHHHHHHHHHHHCCCTTBCC
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEeccc---------------ccccchHHHHHHHHHHHhccCCCccc
Confidence 478999999999999999999974 79999999984321 11233456789999999999999999
Q ss_pred EEEEEecC--------CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCe
Q 002250 707 LYCSITSE--------DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNI 778 (947)
Q Consensus 707 l~~~~~~~--------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NI 778 (947)
+++++... +..++||||+++ ++.+.+... ...+++..+..++.|++.||+||| +.+|+||||||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NI 155 (351)
T 3mi9_A 81 LIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANV 155 (351)
T ss_dssp EEEEEEEC--------CEEEEEEECCSE-EHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGE
T ss_pred HhheeeccccccccCCceEEEEEeccCC-CHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHE
Confidence 99999874 457899999974 777777653 345899999999999999999999 88999999999999
Q ss_pred EecCCCCeEEeccccceecccCCCC--cceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 002250 779 LLDLEWKPRIADFGLAKIVQTGEAG--DLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGD 855 (947)
Q Consensus 779 ll~~~~~~kl~DfG~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~ 855 (947)
+++.++.+||+|||+++........ .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....
T Consensus 156 l~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-- 233 (351)
T 3mi9_A 156 LITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT-- 233 (351)
T ss_dssp EECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS--
T ss_pred EEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCC--
Confidence 9999999999999999876533221 12234568999999999876 457999999999999999999999985431
Q ss_pred cccHHHHHHhhcc-ccccccccc------------cCCCCccCHH-----HHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 856 SKDIVNWVYSKMD-SRDSMLTVV------------DPNISEILKE-----DALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 856 ~~~~~~~~~~~~~-~~~~~~~~~------------d~~~~~~~~~-----~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.......+..... ......... .......... ....+.+++.+|++.||++|||+.|++++
T Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 312 (351)
T 3mi9_A 234 EQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 312 (351)
T ss_dssp HHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence 1111111111110 000000000 0000001111 13458899999999999999999999975
No 236
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2e-37 Score=346.65 Aligned_cols=261 Identities=24% Similarity=0.358 Sum_probs=200.4
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|... +++.||+|++.... .......+.+|+.++++++||||++
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~~iv~ 95 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI----------------KPAIRNQIIRELQVLHECNSPYIVG 95 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC----------------CHHHHHHHHHHHGGGGGCCCTTBCC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc----------------CHHHHHHHHHHHHHHHHCCCCCEEE
Confidence 367899999999999999999976 78999999984221 1123467889999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEeccCCCCCeEecCCCC
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDR-PVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~-~ivH~Dlkp~NIll~~~~~ 785 (947)
+++++..++..++||||+++++|.+++.... .+++..+..++.|++.||+||| +. +|+||||||+||+++.++.
T Consensus 96 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~ 170 (360)
T 3eqc_A 96 FYGAFYSDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGE 170 (360)
T ss_dssp EEEEEEETTEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCC
T ss_pred EeEEEEECCEEEEEEECCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCC
Confidence 9999999999999999999999999998743 5889999999999999999999 64 8999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+|||++....... .....||+.|+|||++.+..++.++||||||+++|||++|+.||..... .........
T Consensus 171 ~kl~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~ 244 (360)
T 3eqc_A 171 IKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDA--KELELMFGC 244 (360)
T ss_dssp EEECCCCCCHHHHHHC--------CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCH--HHHHHHHC-
T ss_pred EEEEECCCCccccccc----ccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHhcc
Confidence 9999999997553322 2234789999999999999999999999999999999999999954311 111000000
Q ss_pred hccc-------------------------cccc----cccccCCCCcc-CHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 866 KMDS-------------------------RDSM----LTVVDPNISEI-LKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 866 ~~~~-------------------------~~~~----~~~~d~~~~~~-~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.... .... ..+........ .......+.+++.+|++.||++|||+.|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 245 QVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp -----------------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 0000 0000 00000000011 1113456889999999999999999999985
No 237
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=7.8e-37 Score=331.83 Aligned_cols=252 Identities=25% Similarity=0.311 Sum_probs=196.9
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
+.|.....||+|+||.||+|+.. +++.||||++... .....+.+.+|+.++++++||||+++
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-----------------~~~~~~~~~~e~~~l~~l~h~~iv~~ 84 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER-----------------DSRYSQPLHEEIALHKHLKHKNIVQY 84 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC-----------------CC---HHHHHHHHHHHTCCCTTBCCE
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC-----------------chHHHHHHHHHHHHHHhCCCCCEeeE
Confidence 34555668999999999999964 6889999998422 11334678899999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhc-CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC-CCC
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTC-HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL-EWK 785 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~-~~~ 785 (947)
++++...+..++||||+++++|.+++... .....++..+..++.|++.||+||| +.+|+||||||+||+++. ++.
T Consensus 85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~ 161 (295)
T 2clq_A 85 LGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGV 161 (295)
T ss_dssp EEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCC
T ss_pred eeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCC
Confidence 99999999999999999999999999864 2345678899999999999999999 889999999999999987 899
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCC--CCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK--INEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWV 863 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~ 863 (947)
+||+|||.+........ ......||+.|+|||++.... ++.++||||||+++|||++|+.||........ ...
T Consensus 162 ~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~~ 236 (295)
T 2clq_A 162 LKISDFGTSKRLAGINP--CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQA---AMF 236 (295)
T ss_dssp EEECCTTTCEESCC-------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHH---HHH
T ss_pred EEEeecccccccCCCCC--cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhH---HHH
Confidence 99999999987643321 122446899999999997654 78899999999999999999999853211111 111
Q ss_pred HhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 864 YSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 864 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
..... ...+..+...+..+.+++.+||+.||++|||+.|+++
T Consensus 237 ~~~~~----------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 237 KVGMF----------KVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp HHHHH----------CCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred hhccc----------cccccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 10000 0011122334456888999999999999999999986
No 238
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.7e-37 Score=336.08 Aligned_cols=253 Identities=24% Similarity=0.297 Sum_probs=186.3
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||+||+|+.. +++.||||++.... ........+.++...++.++||||++
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~~~~~~~~~~h~~iv~ 70 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATV---------------NSQEQKRLLMDLDISMRTVDCPFTVT 70 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC------------------CHHHHHHHHHHHHHHHTTCCCTTBCC
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeeccc---------------CcHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 368899999999999999999964 78999999984211 01112233455556688889999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhc--CCccCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEeccCCCCCeEecCC
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTC--HKIEMDWVVRYAIAVGAAKGLEYLHHGFDR-PVIHRDVKSSNILLDLE 783 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~-~ivH~Dlkp~NIll~~~ 783 (947)
+++++..++..++||||++ |+|.+++... ....+++..+..++.|++.||+||| +. +|+||||||+||+++.+
T Consensus 71 ~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~ 146 (290)
T 3fme_A 71 FYGALFREGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINAL 146 (290)
T ss_dssp EEEEEECSSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTT
T ss_pred EeeeeeccCCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCC
Confidence 9999999999999999996 5888887642 3457899999999999999999999 76 99999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCcccc----ccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYA----YTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
+.+||+|||+++....... .....||+.|+|||++ ....++.++||||+|+++|||++|+.||.........+
T Consensus 147 ~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~ 223 (290)
T 3fme_A 147 GQVKMCDFGISGYLVDDVA---KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQL 223 (290)
T ss_dssp CCEEBCCC------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHH
T ss_pred CCEEEeecCCccccccccc---ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHH
Confidence 9999999999986644322 2234689999999996 55668899999999999999999999985321111111
Q ss_pred HHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 860 VNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
......... .......+..+.+++.+|++.||++|||+.|+++
T Consensus 224 ----~~~~~~~~~---------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 224 ----KQVVEEPSP---------QLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp ----HHHHHSCCC---------CCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ----HHHhccCCC---------CcccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 111111110 0011123456889999999999999999999986
No 239
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.1e-37 Score=340.06 Aligned_cols=263 Identities=28% Similarity=0.395 Sum_probs=185.7
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|... +++.||||++.... .......+.+|+.++++++||||++
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~e~~~l~~l~h~~i~~ 77 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEK----------------CQTSMDELLKEIQAMSQCHHPNIVS 77 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC--------------------------------CCCCCCCTTBCC
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhh----------------cchhHHHHHHHHHHHhhcCCCCEee
Confidence 367899999999999999999954 78999999873211 1123456788999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhc------CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTC------HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~------~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
+++++..++..++||||+++++|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 78 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~ 154 (303)
T 2vwi_A 78 YYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILL 154 (303)
T ss_dssp EEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEE
T ss_pred EEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEE
Confidence 999999999999999999999999998742 2345899999999999999999999 8899999999999999
Q ss_pred cCCCCeEEeccccceecccCCC---CcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCc
Q 002250 781 DLEWKPRIADFGLAKIVQTGEA---GDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDS 856 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~ 856 (947)
+.++.+||+|||.+........ ........||+.|+|||++.. ..++.++||||||+++|||++|+.||.....
T Consensus 155 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-- 232 (303)
T 2vwi_A 155 GEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP-- 232 (303)
T ss_dssp CTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCG--
T ss_pred cCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCch--
Confidence 9999999999999976543321 111224468999999999876 5689999999999999999999999854321
Q ss_pred ccHHHHHHhhcccccccc-ccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 857 KDIVNWVYSKMDSRDSML-TVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
........ ........ ...+ .+.....+..+.+++.+||+.||++|||+.|++++
T Consensus 233 ~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 233 MKVLMLTL--QNDPPSLETGVQD---KEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp GGHHHHHH--TSSCCCTTC--------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred hhHHHHHh--ccCCCcccccccc---chhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 11111111 11111000 0111 11122234568889999999999999999999873
No 240
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.7e-36 Score=338.58 Aligned_cols=347 Identities=21% Similarity=0.209 Sum_probs=213.4
Q ss_pred ccccccCCCCCcc----cceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccE
Q 002250 14 VFSSWTEANSVCK----FNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQV 89 (947)
Q Consensus 14 ~~~sw~~~~~~C~----w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~ 89 (947)
.+++|..+.+||. |.++.|+. ++ +-........ ..-..+++++.|++++|.+....+..+..+++|++
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~--~i---~~~~~~~~~~---~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~ 73 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDV--HI---DMQTQDVYFG---FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73 (390)
T ss_dssp -----CCEECBCC------EEEESC--EE---CSSCCCCEES---CSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSE
T ss_pred CcCCCCCccceehhhhhhccceeee--ee---eccccccccc---ccccccCCceEEEecCCchhhCChhHhcccccCcE
Confidence 3789999999986 55555542 11 1111111111 11235688999999999997777777899999999
Q ss_pred EeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCc
Q 002250 90 LDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNC 168 (947)
Q Consensus 90 L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 168 (947)
|+|++|.+++.++ .+..+++|++|+|++|.+++..+ ..+.++++|++|+|++|.++..+ +..+..+++|++|++++|
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEEECCCCccCcCC-HHHhcCCCCCcEEECCCC
Confidence 9999999988766 58888888888888888876544 66778888888888888776432 222456677777777777
Q ss_pred cccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCcc
Q 002250 169 SVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSE 248 (947)
Q Consensus 169 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 248 (947)
.+++..|..+..+++|++|+|++|++++. .+..+++|++|++++|.+++. ...++|++|++++|.++..+..
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~ 223 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP 223 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeecccc
Confidence 77766666677777777777777766543 244556666666666666532 2233455555555555433221
Q ss_pred ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccc
Q 002250 249 LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMT 328 (947)
Q Consensus 249 l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~ 328 (947)
.. ++|++|++++|++++. ..++.+++|++|++++|.+++
T Consensus 224 --~~------------------------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~------------- 262 (390)
T 3o6n_A 224 --VN------------------------VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK------------- 262 (390)
T ss_dssp --CC------------------------SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE-------------
T ss_pred --cc------------------------ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC-------------
Confidence 12 3455555555555421 344445555555555554442
Q ss_pred eeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCcc
Q 002250 329 DLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNR 408 (947)
Q Consensus 329 ~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 408 (947)
..|..|..+++|+.|++++|++++ +|..+..+++|+.|+|++|++++ +|..+..+++|++|++++|+
T Consensus 263 -----------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 263 -----------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp -----------EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSC
T ss_pred -----------cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCc
Confidence 123334445555555555555553 34445566777777777777764 44456667777777777777
Q ss_pred ccccCCCCCCCCCcceEEEcccCcccC
Q 002250 409 FSGELPSKISEASSLVSIQLSLNQFSG 435 (947)
Q Consensus 409 l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 435 (947)
++. +| +..+++|+.|++++|++..
T Consensus 330 i~~-~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 330 IVT-LK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred cce-eC--chhhccCCEEEcCCCCccc
Confidence 763 33 5667788888888888774
No 241
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=1.3e-37 Score=349.91 Aligned_cols=244 Identities=12% Similarity=0.103 Sum_probs=189.5
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHH---HHhhccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVA---TLSAVRHVN 703 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~---~l~~l~h~n 703 (947)
.++|++.+.||+|+||+||+|+. .+|+.||||++..... ......+.+.+|+. ++++++|||
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~--------------~~~~~~~~~~~E~~~l~~l~~l~hpn 137 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTER--------------PPSNAIKQMKEEVLRLRLLRGIKNQK 137 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC---------------CCTTHHHHHHHHHHGGGGSTTCCSHH
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccc--------------cchHHHHHHHHHHHHHHhccccCCHH
Confidence 36788899999999999999995 5799999999842211 11234467889994 555568999
Q ss_pred cceEE-------EEEecCCc-----------------cEEEEeccCCCChHHHhhhcCC-----ccCCHHHHHHHHHHHH
Q 002250 704 VVKLY-------CSITSEDS-----------------NLLVYEYLPNGSLWDRLHTCHK-----IEMDWVVRYAIAVGAA 754 (947)
Q Consensus 704 iv~l~-------~~~~~~~~-----------------~~lv~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~i~~~ia 754 (947)
||+++ +++..++. .|+||||+ +|+|.+++..... ..+++..+..++.||+
T Consensus 138 iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~ 216 (377)
T 3byv_A 138 QAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVI 216 (377)
T ss_dssp HHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHH
Confidence 99998 66666543 78999999 6899999986422 2344688889999999
Q ss_pred HHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCccccccC----------
Q 002250 755 KGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC---------- 824 (947)
Q Consensus 755 ~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---------- 824 (947)
.||+||| +.+|+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+.
T Consensus 217 ~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~ 287 (377)
T 3byv_A 217 RLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRR 287 (377)
T ss_dssp HHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCE
T ss_pred HHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhccccccccccccc
Confidence 9999999 88999999999999999999999999999985322 2334567 999999999887
Q ss_pred -CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCC
Q 002250 825 -KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKL 903 (947)
Q Consensus 825 -~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~d 903 (947)
.++.++|||||||++|||++|+.||...... .....+. .... ..+..+.+++.+||+.|
T Consensus 288 ~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~---------------~~~~~~~-~~~~----~~~~~~~~li~~~L~~d 347 (377)
T 3byv_A 288 TLMTFSFDAWALGLVIYWIWCADLPITKDAAL---------------GGSEWIF-RSCK----NIPQPVRALLEGFLRYP 347 (377)
T ss_dssp EECCHHHHHHHHHHHHHHHHHSSCCC---------------------CCSGGGG-SSCC----CCCHHHHHHHHHHTCSS
T ss_pred ccCChhhhHHHHHHHHHHHHHCCCCCcccccc---------------cchhhhh-hhcc----CCCHHHHHHHHHHcCCC
Confidence 7999999999999999999999998432110 0000111 1111 22356888999999999
Q ss_pred CCCCCCHHHHHH
Q 002250 904 PAFRPSMRVVVQ 915 (947)
Q Consensus 904 P~~RPt~~ev~~ 915 (947)
|++|||+.|+++
T Consensus 348 p~~Rpt~~e~l~ 359 (377)
T 3byv_A 348 KEDRLLPLQAME 359 (377)
T ss_dssp GGGCCCHHHHHT
T ss_pred chhCCCHHHHhh
Confidence 999999999985
No 242
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2.3e-37 Score=341.75 Aligned_cols=266 Identities=22% Similarity=0.293 Sum_probs=198.4
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ........+.+|+.++++++||||++
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~iv~ 88 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESD---------------DDKMVKKIAMREIKLLKQLRHENLVN 88 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCS---------------SCHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCC---------------CchHHHHHHHHHHHHHhhCCCCCEee
Confidence 478999999999999999999976 58999999984221 01122355789999999999999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||||+++++|.++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+
T Consensus 89 ~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~ 163 (331)
T 4aaa_A 89 LLEVCKKKKRWYLVFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVV 163 (331)
T ss_dssp EEEEEEETTEEEEEEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCE
T ss_pred EEEEeecCCEEEEEEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcE
Confidence 999999999999999999999998887653 35899999999999999999999 8899999999999999999999
Q ss_pred EEeccccceecccCCCCcceecccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
||+|||+++....... ......||+.|+|||++.+. .++.++||||+|+++|||++|+.||..... ..........
T Consensus 164 kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~~~~ 240 (331)
T 4aaa_A 164 KLCDFGFARTLAAPGE--VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSD-IDQLYHIMMC 240 (331)
T ss_dssp EECCCTTC--------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHH
T ss_pred EEEeCCCceeecCCcc--ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCc-HHHHHHHHHH
Confidence 9999999976543322 12234689999999999775 688999999999999999999999854321 1111111100
Q ss_pred hc----------cccccccccccCCC------CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 866 KM----------DSRDSMLTVVDPNI------SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 866 ~~----------~~~~~~~~~~d~~~------~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.. ...........+.. .......+..+.+++.+|++.||++|||+.|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 241 LGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp HCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred hCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 00 00000000001111 11122345678999999999999999999998863
No 243
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=2.7e-37 Score=343.91 Aligned_cols=277 Identities=19% Similarity=0.217 Sum_probs=206.4
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|++.+.||+|+||.||+|.. +++.||||++...........................+.+|+.++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 47899999999999999999999 89999999984221110000000000000000112789999999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHH------hhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEeccCCCCCeEe
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDR------LHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFD-RPVIHRDVKSSNILL 780 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~-~~ivH~Dlkp~NIll 780 (947)
++++..++..++||||+++|+|.++ +.......+++..+..++.|++.||+||| + .+|+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 9999999999999999999999999 66544677999999999999999999999 6 899999999999999
Q ss_pred cCCCCeEEeccccceecccCCCCcceecccccccccCccccccC-CCCC-ccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-KINE-KSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
+.++.+||+|||.+...... ......||+.|+|||++.+. .++. ++||||||+++|||++|+.||...... ..
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~ 260 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL-VE 260 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-HH
T ss_pred cCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-HH
Confidence 99999999999999876443 22345689999999999877 5666 999999999999999999999643221 22
Q ss_pred HHHHHHhhccccccccc----cccCC----CCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 859 IVNWVYSKMDSRDSMLT----VVDPN----ISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 859 ~~~~~~~~~~~~~~~~~----~~d~~----~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.... .......... ...+. ........+..+.+++.+|++.||++|||+.|++++
T Consensus 261 ~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h 323 (348)
T 2pml_X 261 LFNN---IRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH 323 (348)
T ss_dssp HHHH---HTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHHH---HhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 2221 1111111110 00000 001113345678899999999999999999999873
No 244
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=2e-36 Score=353.48 Aligned_cols=267 Identities=24% Similarity=0.253 Sum_probs=202.9
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
..+.++|++.+.||+|+||+||+|+.. +++.||||++......... +. ..........+.+.+|+.++++++|||
T Consensus 32 ~~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~E~~~l~~l~hpn 107 (504)
T 3q5i_A 32 GKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGR-YS---DDNKNIEKFHEEIYNEISLLKSLDHPN 107 (504)
T ss_dssp SCGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC--------------------CTHHHHHHHHHHHHTCCCTT
T ss_pred CCcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhccccc-cc---ccchhhHHHHHHHHHHHHHHHhCCCCC
Confidence 456788999999999999999999966 6889999999543221100 00 000111234567899999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..+...++||||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 108 iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~ 182 (504)
T 3q5i_A 108 IIKLFDVFEDKKYFYLVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENK 182 (504)
T ss_dssp BCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESST
T ss_pred CCeEEEEEEcCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecC
Confidence 999999999999999999999999999999764 45899999999999999999999 8899999999999999877
Q ss_pred C---CeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 784 W---KPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 784 ~---~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
+ .+||+|||+++....... .....||+.|+|||++. +.++.++||||+||++|||++|+.||... ...
T Consensus 183 ~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~ 253 (504)
T 3q5i_A 183 NSLLNIKIVDFGLSSFFSKDYK---LRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQ-----NDQ 253 (504)
T ss_dssp TCCSSEEECCCTTCEECCTTSC---BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHH
T ss_pred CCCccEEEEECCCCEEcCCCCc---cccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCC-----CHH
Confidence 5 699999999987654432 23457999999999886 46999999999999999999999999532 122
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+............. .+.....+..+.+++.+|++.||.+|||+.|++++
T Consensus 254 ~~~~~i~~~~~~~~-------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 254 DIIKKVEKGKYYFD-------FNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp HHHHHHHHCCCCCC-------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHcCCCCCC-------ccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 22221111111100 00011234568899999999999999999999853
No 245
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=1.1e-36 Score=341.64 Aligned_cols=259 Identities=22% Similarity=0.259 Sum_probs=192.0
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|... +++.||||++.... ........+.+|+.+++.++||||+
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~hpniv 87 (371)
T 2xrw_A 23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPF---------------QNQTHAKRAYRELVLMKCVNHKNII 87 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTT---------------SSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEecccc---------------CChHHHHHHHHHHHHHHhcCCCCcc
Confidence 3578999999999999999999965 68999999984211 1112345678999999999999999
Q ss_pred eEEEEEecCC------ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 706 KLYCSITSED------SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 706 ~l~~~~~~~~------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
++++++...+ ..++||||++ |+|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl 159 (371)
T 2xrw_A 88 GLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIV 159 (371)
T ss_dssp CEEEEECSCCSTTTCCEEEEEEECCS-EEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEE
T ss_pred ceEEeeccccccccccceEEEEEcCC-CCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEE
Confidence 9999998765 5799999996 578888863 4889999999999999999999 889999999999999
Q ss_pred ecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 780 LDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 780 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
++.++.+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.... .
T Consensus 160 ~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~ 231 (371)
T 2xrw_A 160 VKSDCTLKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTD-----H 231 (371)
T ss_dssp ECTTSCEEECCCCC-------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS-----H
T ss_pred EcCCCCEEEEEeeccccccccc---ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC-----H
Confidence 9999999999999998654332 1224578999999999999899999999999999999999999995431 1
Q ss_pred HHHHHhhccc----------------------cccc---------cccccCCCCccCHHHHHHHHHHHHhccCCCCCCCC
Q 002250 860 VNWVYSKMDS----------------------RDSM---------LTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRP 908 (947)
Q Consensus 860 ~~~~~~~~~~----------------------~~~~---------~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP 908 (947)
.......... .... .....+...+........+.+++.+|++.||++||
T Consensus 232 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~ 311 (371)
T 2xrw_A 232 IDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRI 311 (371)
T ss_dssp HHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSC
T ss_pred HHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCC
Confidence 1111111000 0000 00000111112233467799999999999999999
Q ss_pred CHHHHHHH
Q 002250 909 SMRVVVQM 916 (947)
Q Consensus 909 t~~ev~~~ 916 (947)
|+.|++++
T Consensus 312 t~~e~l~h 319 (371)
T 2xrw_A 312 SVDEALQH 319 (371)
T ss_dssp CHHHHHHS
T ss_pred CHHHHhCC
Confidence 99999874
No 246
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=5.5e-37 Score=350.80 Aligned_cols=204 Identities=24% Similarity=0.334 Sum_probs=167.4
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
.+.++|++.+.||+|+||.||+|+.. +++.||||++.... ......+.+.+|++++++++||||
T Consensus 23 ~i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~nI 87 (432)
T 3n9x_A 23 HVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMF---------------EDLIDCKRILREITILNRLKSDYI 87 (432)
T ss_dssp CCCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTT---------------TSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred eecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchh---------------cChHHHHHHHHHHHHHHHcCCCCc
Confidence 34578999999999999999999965 68899999984211 111234678899999999999999
Q ss_pred ceEEEEEecC-----CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 705 VKLYCSITSE-----DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 705 v~l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
+++++++... ...|+||||++ |+|.+++.. ...+++..+..++.||+.||+||| +.+|+||||||+||+
T Consensus 88 v~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NIL 161 (432)
T 3n9x_A 88 IRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKLFKT--PIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCL 161 (432)
T ss_dssp CCEEEECCCSCTTTCCCEEEEEECCS-EEHHHHHHS--SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEE
T ss_pred ceEEEEEecCCCCcCCeEEEEEecCC-cCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeE
Confidence 9999999776 56899999995 699999986 345899999999999999999999 889999999999999
Q ss_pred ecCCCCeEEeccccceecccCCCC--------------------cceecccccccccCcccc-ccCCCCCccchHHHHHH
Q 002250 780 LDLEWKPRIADFGLAKIVQTGEAG--------------------DLTHVIAGTHGYIAPEYA-YTCKINEKSDVYSFGVV 838 (947)
Q Consensus 780 l~~~~~~kl~DfG~a~~~~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~slGv~ 838 (947)
++.++.+||+|||+|+........ ......+||+.|+|||++ ....++.++||||+||+
T Consensus 162 l~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~i 241 (432)
T 3n9x_A 162 LNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCI 241 (432)
T ss_dssp ECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHH
T ss_pred ECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHH
Confidence 999999999999999876543221 112456799999999986 45569999999999999
Q ss_pred HHHHHhCCCCCC
Q 002250 839 LMELVTGKRPIV 850 (947)
Q Consensus 839 l~elltg~~p~~ 850 (947)
+|||++|..||.
T Consensus 242 l~ell~g~~p~~ 253 (432)
T 3n9x_A 242 FAELLNMLQSHI 253 (432)
T ss_dssp HHHHHTTCTTTC
T ss_pred HHHHHhcccccc
Confidence 999998766553
No 247
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=9.1e-37 Score=346.35 Aligned_cols=263 Identities=21% Similarity=0.230 Sum_probs=203.5
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-----
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR----- 700 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~----- 700 (947)
+.++|++.+.||+|+||+||+|+.. +++.||||++... ....+.+.+|++++++++
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~~~~~~ 96 (397)
T 1wak_A 35 FNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA------------------EHYTETALDEIRLLKSVRNSDPN 96 (397)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC------------------HHHHHHHHHHHHHHHHHHHSCTT
T ss_pred cCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC------------------CcchHHHHHHHHHHHHHhhcCCC
Confidence 3478999999999999999999954 6889999998311 123456889999999996
Q ss_pred ---ccccceEEEEEe----cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEecc
Q 002250 701 ---HVNVVKLYCSIT----SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDR-PVIHRD 772 (947)
Q Consensus 701 ---h~niv~l~~~~~----~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~-~ivH~D 772 (947)
|+||+++++++. .....++||||+ ++++.+++.......+++..+..++.||+.||+||| ++ +|+|||
T Consensus 97 ~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrD 172 (397)
T 1wak_A 97 DPNREMVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTD 172 (397)
T ss_dssp CGGGGGBCCEEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCC
T ss_pred CCCcceeeeeecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCC
Confidence 788999999987 556789999999 677878777655567999999999999999999999 77 999999
Q ss_pred CCCCCeEecCCC-------------------------------------------------CeEEeccccceecccCCCC
Q 002250 773 VKSSNILLDLEW-------------------------------------------------KPRIADFGLAKIVQTGEAG 803 (947)
Q Consensus 773 lkp~NIll~~~~-------------------------------------------------~~kl~DfG~a~~~~~~~~~ 803 (947)
|||+|||++.++ .+||+|||.++......
T Consensus 173 ikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~-- 250 (397)
T 1wak_A 173 IKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHF-- 250 (397)
T ss_dssp CSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCS--
T ss_pred CCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccC--
Confidence 999999999775 79999999998765432
Q ss_pred cceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc----cHHHHHHhhcccc---------
Q 002250 804 DLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK----DIVNWVYSKMDSR--------- 870 (947)
Q Consensus 804 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~----~~~~~~~~~~~~~--------- 870 (947)
....||+.|+|||++.+..++.++|||||||++|||++|+.||........ +............
T Consensus 251 ---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 327 (397)
T 1wak_A 251 ---TEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGK 327 (397)
T ss_dssp ---CSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCT
T ss_pred ---ccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhccc
Confidence 234689999999999999999999999999999999999999965432211 1111111110000
Q ss_pred ---------ccccccccC----------CCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 871 ---------DSMLTVVDP----------NISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 871 ---------~~~~~~~d~----------~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.......+. ...+...+....+.+++.+||+.||++|||+.|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 328 YSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp TGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred ccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 000000000 0012356777889999999999999999999999863
No 248
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=8e-37 Score=336.86 Aligned_cols=252 Identities=24% Similarity=0.337 Sum_probs=195.5
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-ccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNV 704 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~ni 704 (947)
..++|++.+.||+|+||.||+|+.. +++.||||++... ......+.+|+.+++++ +||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~------------------~~~~~~~~~e~~~l~~l~~h~~i 83 (326)
T 2x7f_A 22 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT------------------GDEEEEIKQEINMLKKYSHHRNI 83 (326)
T ss_dssp CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC------------------SSTTHHHHHHHHHHHHHCCSTTB
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC------------------cccHHHHHHHHHHHHhccCCCCe
Confidence 4578999999999999999999964 7899999998421 13346788999999999 89999
Q ss_pred ceEEEEEec------CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCe
Q 002250 705 VKLYCSITS------EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNI 778 (947)
Q Consensus 705 v~l~~~~~~------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NI 778 (947)
+++++++.. .+..++||||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NI 160 (326)
T 2x7f_A 84 ATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNV 160 (326)
T ss_dssp CCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGE
T ss_pred eeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHE
Confidence 999999977 457899999999999999998765567899999999999999999999 88999999999999
Q ss_pred EecCCCCeEEeccccceecccCCCCcceecccccccccCccccc-----cCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 002250 779 LLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY-----TCKINEKSDVYSFGVVLMELVTGKRPIVPEF 853 (947)
Q Consensus 779 ll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~ 853 (947)
+++.++.+||+|||++........ ......||+.|+|||++. ...++.++||||||+++|||++|+.||....
T Consensus 161 l~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~ 238 (326)
T 2x7f_A 161 LLTENAEVKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH 238 (326)
T ss_dssp EECTTCCEEECCCTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred EEcCCCCEEEeeCcCceecCcCcc--ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCc
Confidence 999999999999999976543221 122346899999999987 5668899999999999999999999984321
Q ss_pred CCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 854 GDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
............. +.. .....+..+.+++.+||+.||++|||+.++++
T Consensus 239 -----~~~~~~~~~~~~~-------~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 239 -----PMRALFLIPRNPA-------PRL--KSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp -----HHHHHHHHHHSCC-------CCC--SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred -----HHHHHHHhhcCcc-------ccC--CccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 1111111111100 000 01122356888999999999999999999987
No 249
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=4.2e-37 Score=350.22 Aligned_cols=259 Identities=22% Similarity=0.306 Sum_probs=192.6
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
..|+..+.||+|+||+||+|+.. +|+.||||++... .....+|++++++++||||+++
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~---------------------~~~~~~E~~il~~l~hpniv~l 112 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD---------------------KRFKNRELQIMRKLDHCNIVRL 112 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------------------TTSCCHHHHHHHTCCCTTBCCE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc---------------------chhHHHHHHHHHHcCCCCccce
Confidence 46888999999999999999975 6999999998421 1123479999999999999999
Q ss_pred EEEEecCC------ccEEEEeccCCCChHHHhhhc--CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 708 YCSITSED------SNLLVYEYLPNGSLWDRLHTC--HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 708 ~~~~~~~~------~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
+++|...+ ..++||||+++ ++.+.+... ....+++..+..++.||++||+||| +.+|+||||||+|||
T Consensus 113 ~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIL 188 (420)
T 1j1b_A 113 RYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLL 188 (420)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEE
T ss_pred eeEEeccCCCCcceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEE
Confidence 99985421 25699999975 676666532 3457899999999999999999999 899999999999999
Q ss_pred ecCC-CCeEEeccccceecccCCCCcceecccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 780 LDLE-WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 780 l~~~-~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
++.+ +.+||+|||+++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||.... ...
T Consensus 189 l~~~~~~~kl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~-~~~ 264 (420)
T 1j1b_A 189 LDPDTAVLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS-GVD 264 (420)
T ss_dssp EETTTTEEEECCCTTCEECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS-HHH
T ss_pred EeCCCCeEEeccchhhhhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC-HHH
Confidence 9965 5689999999987654332 2234789999999998765 68999999999999999999999995432 111
Q ss_pred cHHHHHHhhccc--------cccccccccCCCCc------cCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 858 DIVNWVYSKMDS--------RDSMLTVVDPNISE------ILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 858 ~~~~~~~~~~~~--------~~~~~~~~d~~~~~------~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.+...+...... .........+.+.. +.......+.+++.+|++.||++|||+.|++++
T Consensus 265 ~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h 337 (420)
T 1j1b_A 265 QLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 337 (420)
T ss_dssp HHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence 122222111000 00000000011100 122334678899999999999999999999863
No 250
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.4e-37 Score=349.00 Aligned_cols=255 Identities=11% Similarity=-0.004 Sum_probs=181.0
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc--cccccc
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV--RHVNVV 705 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv 705 (947)
..|+..+.||+|+||+||+|+.. +++.||||++..... ........+.+|+.+++.+ +||||+
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------------~~~~~~~~~~~E~~~~~~l~~~hp~iv 127 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAE--------------NSRSELERLHEATFAAARLLGESPEEA 127 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCST--------------THHHHHHHHHHHHHHHHHHHC------
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEeccc--------------ccccHHHHHHHHHHHHHHhcccChhhh
Confidence 45888999999999999999965 789999999953211 0112345677886666555 599988
Q ss_pred eEE-------EEEecCC-----------------ccEEEEeccCCCChHHHhhhcCCccCCHHHH------HHHHHHHHH
Q 002250 706 KLY-------CSITSED-----------------SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVR------YAIAVGAAK 755 (947)
Q Consensus 706 ~l~-------~~~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~------~~i~~~ia~ 755 (947)
+++ +++..++ ..|+||||++ |+|.+++..... .+++..+ ..++.||+.
T Consensus 128 ~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~ 205 (371)
T 3q60_A 128 RDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF-VYVFRGDEGILALHILTAQLIR 205 (371)
T ss_dssp ----CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHH
Confidence 865 4444332 3699999998 899999987422 3355555 778899999
Q ss_pred HHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCcccccc--CCCCCccchH
Q 002250 756 GLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT--CKINEKSDVY 833 (947)
Q Consensus 756 ~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~ 833 (947)
||+||| +.+|+||||||+|||++.++.+||+|||+|+..... .....+|+.|+|||++.+ ..++.++|||
T Consensus 206 aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~Diw 277 (371)
T 3q60_A 206 LAANLQ---SKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAW 277 (371)
T ss_dssp HHHHHH---HTTEEETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHH
T ss_pred HHHHHH---HCCCccCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHH
Confidence 999999 899999999999999999999999999999865322 214467799999999987 6799999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCC-CccCHHHHHHHHHHHHhccCCCCCCCCCHHH
Q 002250 834 SFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNI-SEILKEDALKVLRIAIHCTNKLPAFRPSMRV 912 (947)
Q Consensus 834 slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~e 912 (947)
||||++|||++|+.||.......... .. ............ .......+..+.+++.+||+.||++|||+.|
T Consensus 278 SlG~il~elltg~~Pf~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e 349 (371)
T 3q60_A 278 QLGLSIYRVWCLFLPFGLVTPGIKGS-------WK-RPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLE 349 (371)
T ss_dssp HHHHHHHHHHHSSCSTTBCCTTCTTC-------CC-BCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCcccccc-------hh-hhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHH
Confidence 99999999999999996543211100 00 000000000010 1111234567889999999999999999999
Q ss_pred HHH
Q 002250 913 VVQ 915 (947)
Q Consensus 913 v~~ 915 (947)
+++
T Consensus 350 ~l~ 352 (371)
T 3q60_A 350 AME 352 (371)
T ss_dssp HTT
T ss_pred Hhc
Confidence 974
No 251
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=2.1e-36 Score=340.80 Aligned_cols=202 Identities=25% Similarity=0.283 Sum_probs=172.1
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-cc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HV 702 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~ 702 (947)
+.+.++|++.+.||+|+||+||+|+.. +++.||||++... ......+.+|+.+++.++ |+
T Consensus 50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~------------------~~~~~~~~~e~~~l~~l~~~~ 111 (382)
T 2vx3_A 50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK------------------KAFLNQAQIEVRLLELMNKHD 111 (382)
T ss_dssp CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS------------------HHHHHHHHHHHHHHHHHHHCS
T ss_pred CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc------------------HHHHHHHHHHHHHHHHHHhcc
Confidence 445689999999999999999999965 6889999998311 122356778999988885 44
Q ss_pred -----ccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCC
Q 002250 703 -----NVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSN 777 (947)
Q Consensus 703 -----niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~N 777 (947)
+|+++++++..++..++||||++ |+|.+++.......+++..+..++.|++.||+|||.. ..+|+||||||+|
T Consensus 112 ~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~N 189 (382)
T 2vx3_A 112 TEMKYYIVHLKRHFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPEN 189 (382)
T ss_dssp SGGGGGBCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGG
T ss_pred cccceeEEEeeeeeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCccc
Confidence 49999999999999999999995 5999999886556789999999999999999999931 4689999999999
Q ss_pred eEec--CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCC
Q 002250 778 ILLD--LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVP 851 (947)
Q Consensus 778 Ill~--~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~ 851 (947)
||++ .++.+||+|||+|+...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 190 Ill~~~~~~~~kL~DFG~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~ 260 (382)
T 2vx3_A 190 ILLCNPKRSAIKIVDFGSSCQLGQRI-----YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260 (382)
T ss_dssp EEESSTTSCCEEECCCTTCEETTCCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred EEEecCCCCcEEEEeccCceeccccc-----ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9995 47889999999998764322 245789999999999999999999999999999999999999964
No 252
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.1e-36 Score=355.97 Aligned_cols=349 Identities=21% Similarity=0.203 Sum_probs=224.7
Q ss_pred ccccccccCCCCCcc----cceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCc
Q 002250 12 TGVFSSWTEANSVCK----FNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRL 87 (947)
Q Consensus 12 ~~~~~sw~~~~~~C~----w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 87 (947)
...+++|.++.+||. |.++.|+. .++.........++ -..+.+++.|++++|.+....+..+..+++|
T Consensus 6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~-----~i~~~~~~~~~~~~---~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L 77 (597)
T 3oja_B 6 RYNVKPRQPEYKCIDSNLQYDCVFYDV-----HIDMQTQDVYFGFE---DITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77 (597)
T ss_dssp -----CCCSEECCCCC--CCSEEECSC-----EECSSCCCCEESCS---SGGGCCCSEEEESSCEESEECTHHHHHCCCC
T ss_pred cccccCCCCCCcCcccCcCceeEecCc-----eecccccccccCcc---cccCCCceEEEeeCCCCCCcCHHHHccCCCC
Confidence 456889999999985 77666652 12222222221111 2346788999999999988777888999999
Q ss_pred cEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEcc
Q 002250 88 QVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLT 166 (947)
Q Consensus 88 ~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~ 166 (947)
++|+|++|.|++.++ .++.+++|++|+|++|.+++..+ ..|.++++|++|+|++|.++..+ +..+..+++|++|+|+
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMS 155 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECC
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCCCCCEEEeeCCCCCCCC-HHHhccCCCCCEEEee
Confidence 999999999998776 58888888889988888886554 67788888888888888776532 2234667777777777
Q ss_pred CccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCC
Q 002250 167 NCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDL 246 (947)
Q Consensus 167 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 246 (947)
+|.+++..|..|+.+++|++|+|++|.+++. .+..+++|+.|++++|.+++. ...++|+.|++++|.++..+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEE
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccc
Confidence 7777766666677777777777777776643 244456666666666666532 22344555555555554332
Q ss_pred ccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCc
Q 002250 247 SELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGA 326 (947)
Q Consensus 247 ~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 326 (947)
..+ . ++|+.|+|++|.+++ +..++.+++|+.|+|++|.+++
T Consensus 228 ~~~--~------------------------~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~----------- 268 (597)
T 3oja_B 228 GPV--N------------------------VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK----------- 268 (597)
T ss_dssp CSC--C------------------------SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-----------
T ss_pred ccc--C------------------------CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-----------
Confidence 221 1 345555555555543 2344455555555555554442
Q ss_pred cceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccC
Q 002250 327 MTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLAN 406 (947)
Q Consensus 327 l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 406 (947)
..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+.. +|..+..+++|++|+|++
T Consensus 269 -------------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 269 -------------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDH 333 (597)
T ss_dssp -------------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCS
T ss_pred -------------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCC
Confidence 223344455555566666666553 35555667777777777777773 555677778888888888
Q ss_pred ccccccCCCCCCCCCcceEEEcccCcccC
Q 002250 407 NRFSGELPSKISEASSLVSIQLSLNQFSG 435 (947)
Q Consensus 407 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 435 (947)
|++++. | +..+++|+.|+|++|.+.+
T Consensus 334 N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 334 NSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 888743 3 6677888899999998874
No 253
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=340.94 Aligned_cols=254 Identities=22% Similarity=0.273 Sum_probs=183.8
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-ccccce
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVNVVK 706 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~ 706 (947)
.+|++.+.||+|+||.||+|+.. +++.||||++... .......+.+|+.+++++. ||||++
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----------------~~~~~~~~~~e~~~l~~l~~h~~iv~ 90 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN-----------------EEEKNRAIIQEVCFMKKLSGHPNIVQ 90 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES-----------------SHHHHHHHHHHHHHHHHHTTSTTBCC
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC-----------------chHHHHHHHHHHHHHHHhccCCChhh
Confidence 57899999999999999999965 7899999988321 1123456889999999996 999999
Q ss_pred EEEEEe--------cCCccEEEEeccCCCChHHHhhhc-CCccCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEeccCCC
Q 002250 707 LYCSIT--------SEDSNLLVYEYLPNGSLWDRLHTC-HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRP--VIHRDVKS 775 (947)
Q Consensus 707 l~~~~~--------~~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~--ivH~Dlkp 775 (947)
+++++. .....++||||++ |+|.+++... ....+++..+..++.|++.||+||| +.+ |+||||||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp 166 (337)
T 3ll6_A 91 FCSAASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKV 166 (337)
T ss_dssp EEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCG
T ss_pred ccccccccccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCc
Confidence 999984 3344689999995 7999988753 3456999999999999999999999 777 99999999
Q ss_pred CCeEecCCCCeEEeccccceecccCCCCc----------ceecccccccccCcccc---ccCCCCCccchHHHHHHHHHH
Q 002250 776 SNILLDLEWKPRIADFGLAKIVQTGEAGD----------LTHVIAGTHGYIAPEYA---YTCKINEKSDVYSFGVVLMEL 842 (947)
Q Consensus 776 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~slGv~l~el 842 (947)
+||+++.++.+||+|||+++......... ......||+.|+|||++ .+..++.++||||||+++|||
T Consensus 167 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el 246 (337)
T 3ll6_A 167 ENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLL 246 (337)
T ss_dssp GGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHH
T ss_pred ccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHH
Confidence 99999999999999999998765432211 11134589999999998 566788999999999999999
Q ss_pred HhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccC
Q 002250 843 VTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAE 921 (947)
Q Consensus 843 ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~ 921 (947)
++|+.||..... ......... .. ........+.+++.+||+.||++|||+.|++++|+++.
T Consensus 247 ~~g~~p~~~~~~-----~~~~~~~~~----------~~---~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~ 307 (337)
T 3ll6_A 247 CFRQHPFEDGAK-----LRIVNGKYS----------IP---PHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIA 307 (337)
T ss_dssp HHSSCCC-----------------CC----------CC---TTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HhCCCCCcchhH-----HHhhcCccc----------CC---cccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 999999843211 111110000 00 00111233678999999999999999999999998764
No 254
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=338.53 Aligned_cols=261 Identities=25% Similarity=0.355 Sum_probs=198.0
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
.++|++.+.||+|+||.||+|+... .||||++..... .....+.+.+|+.++++++||||+++
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~---------------~~~~~~~~~~e~~~l~~l~h~~iv~~ 94 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERD---------------NEDQLKAFKREVMAYRQTRHENVVLF 94 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSC---------------CCCCCCCCCTTGGGGTTCCCTTBCCC
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCC---------------CHHHHHHHHHHHHHHhcCCCCCEeEE
Confidence 3678999999999999999999863 599999853211 12233557789999999999999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeE
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPR 787 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~k 787 (947)
++++..++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++ ++.+|
T Consensus 95 ~~~~~~~~~~~iv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~ 169 (319)
T 2y4i_B 95 MGACMSPPHLAIITSLCKGRTLYSVVRDA-KIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVV 169 (319)
T ss_dssp CEEEECSSCEEEECBCCCSEEHHHHTTSS-CCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCE
T ss_pred EEEEecCCceEEEeecccCCcHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEE
Confidence 99999999999999999999999999863 346889999999999999999999 88999999999999998 67999
Q ss_pred EeccccceecccCCC---CcceecccccccccCcccccc---------CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 002250 788 IADFGLAKIVQTGEA---GDLTHVIAGTHGYIAPEYAYT---------CKINEKSDVYSFGVVLMELVTGKRPIVPEFGD 855 (947)
Q Consensus 788 l~DfG~a~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~ 855 (947)
|+|||+++....... ........||+.|+|||++.. ..++.++||||||+++|||++|+.||...
T Consensus 170 l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~--- 246 (319)
T 2y4i_B 170 ITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQ--- 246 (319)
T ss_dssp ECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSC---
T ss_pred EeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCC---
Confidence 999999875432211 112223468999999999864 34788999999999999999999998532
Q ss_pred cccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCC
Q 002250 856 SKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCS 924 (947)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~ 924 (947)
.............. +... ....+..+.+++.+||+.||++|||+.+++++|+++....
T Consensus 247 --~~~~~~~~~~~~~~-------~~~~--~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 247 --PAEAIIWQMGTGMK-------PNLS--QIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp --CHHHHHHHHHTTCC-------CCCC--CSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred --CHHHHHHHhccCCC-------CCCC--cCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 11111111111111 1110 0012345788999999999999999999999999987653
No 255
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2.7e-37 Score=342.70 Aligned_cols=252 Identities=25% Similarity=0.323 Sum_probs=195.4
Q ss_pred hhccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHH-Hhhccccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVAT-LSAVRHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv 705 (947)
.++|++.+.||+|+||+||+|+. .+|+.||||++.... .......+..|+.+ ++.++||||+
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----------------~~~~~~~~~~e~~~~~~~~~h~~iv 113 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATV----------------NSQEQKRLLMDLDISMRTVDCPFTV 113 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCC----------------CCHHHHHHHHHHHHHHTTCCCTTTC
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEecccc----------------CcHHHHHHHHHHHHHHhhcCCCcEE
Confidence 36788889999999999999996 479999999984321 01123445555555 7788999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhc--CCccCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEeccCCCCCeEecC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTC--HKIEMDWVVRYAIAVGAAKGLEYLHHGFDR-PVIHRDVKSSNILLDL 782 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~-~ivH~Dlkp~NIll~~ 782 (947)
++++++..++..++||||+++ +|.+++... ....+++..+..++.|++.||+||| +. +|+||||||+||+++.
T Consensus 114 ~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~ 189 (340)
T 3an0_A 114 TFYGALFREGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINA 189 (340)
T ss_dssp CEEEEEECSSCEEEEECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECS
T ss_pred EEeeEEEeCCcEEEEHHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECC
Confidence 999999999999999999975 999988743 4567899999999999999999999 65 9999999999999999
Q ss_pred CCCeEEeccccceecccCCCCcceecccccccccCccccc----cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 783 EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY----TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
++.+||+|||+++...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||.....
T Consensus 190 ~~~~kl~Dfg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~---- 262 (340)
T 3an0_A 190 LGQVKMCDFGISGYLVDSV---AKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGT---- 262 (340)
T ss_dssp TTCEEECCCSHHHHHSCHH---HHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSC----
T ss_pred CCCEEEeeCCCceeccccc---ccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccc----
Confidence 9999999999997654321 122346899999999964 34688999999999999999999999853211
Q ss_pred HHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 859 IVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
............. +.. .....+..+.+++.+||+.||++|||+.|+++
T Consensus 263 ~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 263 PFQQLKQVVEEPS-------PQL--PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp HHHHHHHHHHSCC-------CCC--CGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred hHHHHHHHhcCCC-------CCC--CcccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 1111111111111 001 01123456889999999999999999999986
No 256
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=6.8e-37 Score=333.53 Aligned_cols=254 Identities=22% Similarity=0.288 Sum_probs=198.2
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
..+.|++.+.||+|+||.||+|+.. +++.||+|++... .......+.+|+.++++++||||+
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~-----------------~~~~~~~~~~e~~~l~~l~h~~i~ 79 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK-----------------SEEELEDYIVEIEILATCDHPYIV 79 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC---------------------CCHHHHHHHHHHHHHCCCTTBC
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC-----------------CHHHHHHHHHHHHHHhcCCCCCEe
Confidence 3478999999999999999999976 6899999998321 123457788999999999999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..++..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+++||||||+||+++.++.
T Consensus 80 ~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~ 155 (302)
T 2j7t_A 80 KLLGAYYHDGKLWIMIEFCPGGAVDAIMLEL-DRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGD 155 (302)
T ss_dssp CEEEEEECC-CEEEEEECCTTEEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSC
T ss_pred eeeeeeeeCCeEEEEEEeCCCCcHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCC
Confidence 9999999999999999999999999998763 345899999999999999999999 889999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccc-----cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY-----TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
+||+|||++........ ......||+.|+|||++. ...++.++||||||+++|||++|+.||... +..
T Consensus 156 ~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~ 228 (302)
T 2j7t_A 156 IRLADFGVSAKNLKTLQ--KRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL-----NPM 228 (302)
T ss_dssp EEECCCHHHHHHHHHHH--C-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS-----CHH
T ss_pred EEEEECCCCcccccccc--ccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC-----CHH
Confidence 99999998754321110 112346899999999983 567889999999999999999999998532 111
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+........... ....+...+..+.+++.+|++.||++|||+.|++++
T Consensus 229 ~~~~~~~~~~~~--------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 229 RVLLKIAKSDPP--------TLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp HHHHHHHHSCCC--------CCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred HHHHHHhccCCc--------ccCCccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 111111111110 001112234568899999999999999999999863
No 257
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.1e-36 Score=328.97 Aligned_cols=262 Identities=23% Similarity=0.307 Sum_probs=204.2
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-ccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVN 703 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n 703 (947)
.+.++|++.+.||+|+||.||+|... +++.||||++........ . ........+.+.+|+++++++. |||
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~---~-----~~~~~~~~~~~~~e~~~l~~l~~h~~ 85 (298)
T 1phk_A 14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSF---S-----AEEVQELREATLKEVDILRKVSGHPN 85 (298)
T ss_dssp -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTC---C-----HHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEeccccccc---C-----HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34578999999999999999999975 689999999853321100 0 0011122456789999999995 999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 86 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~ 160 (298)
T 1phk_A 86 IIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDD 160 (298)
T ss_dssp BCCEEEEEECSSEEEEEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTT
T ss_pred EeeeeeeeccCCeEEEEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCC
Confidence 999999999999999999999999999999863 45899999999999999999999 8999999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccc------cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY------TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
+.+||+|||.+........ .....||+.|+|||++. ...++.++||||||+++|||++|+.||...
T Consensus 161 ~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~----- 232 (298)
T 1phk_A 161 MNIKLTDFGFSCQLDPGEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR----- 232 (298)
T ss_dssp CCEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----
T ss_pred CcEEEecccchhhcCCCcc---cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc-----
Confidence 9999999999987654332 22346899999999885 456888999999999999999999998532
Q ss_pred cHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 858 DIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
................ . .+.....+..+.+++.+|++.||++|||+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~---~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 233 KQMLMLRMIMSGNYQF---G----SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp SHHHHHHHHHHTCCCC---C----TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred cHHHHHHHHhcCCccc---C----cccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 1111111111111110 0 0111233456889999999999999999999986
No 258
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=5.9e-37 Score=343.15 Aligned_cols=276 Identities=20% Similarity=0.195 Sum_probs=197.1
Q ss_pred HHHhhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
..+.++|++.+.||+|+||.||+|...+|+.||||++.......... .........+.+.+|+.++++++||||
T Consensus 18 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~------~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 18 HAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTV------NILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCE------EGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchh------hhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 45568899999999999999999998889999999985332211100 000111223678999999999999999
Q ss_pred ceEEEEEec-----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 705 VKLYCSITS-----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 705 v~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
+++++++.. ....++||||++ |+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl 166 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQ-RIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNIL 166 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCT-TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEE
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEE
Confidence 999999854 335699999997 6888888753 446899999999999999999999 889999999999999
Q ss_pred ecCCCCeEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 780 LDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 780 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
++.++.+||+|||+++....... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... ..+
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~ 241 (362)
T 3pg1_A 167 LADNNDITICDFNLAREDTADAN---KTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGST--FYN 241 (362)
T ss_dssp ECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHH
T ss_pred EcCCCCEEEEecCcccccccccc---cceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCC--HHH
Confidence 99999999999999975443322 224568999999999877 678999999999999999999999995431 111
Q ss_pred HHHHHHhhcccc------------------ccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 859 IVNWVYSKMDSR------------------DSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 859 ~~~~~~~~~~~~------------------~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
............ .....................+.+++.+|++.||++|||+.|++++
T Consensus 242 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 242 QLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH 317 (362)
T ss_dssp HHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence 111110000000 0000000011112222335568899999999999999999999974
No 259
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=3.7e-37 Score=368.47 Aligned_cols=256 Identities=21% Similarity=0.315 Sum_probs=201.4
Q ss_pred hhccCCcccccccCceeEEEEEeCC----CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNS----GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~----~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.++|++.+.||+|+||+||+|.... +..||||++.... .....+.+.+|+.++++++|||
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~E~~~l~~l~Hpn 452 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT----------------SDSVREKFLQEALTMRQFDHPH 452 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT----------------CHHHHHHHHHHHHHHHHCCCTT
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC----------------CHHHHHHHHHHHHHHHhCCCCC
Confidence 3678889999999999999999642 4579999873211 1123367889999999999999
Q ss_pred cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCC
Q 002250 704 VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLE 783 (947)
Q Consensus 704 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~ 783 (947)
|+++++++. ++..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 453 Iv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~~~-~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~ 527 (656)
T 2j0j_A 453 IVKLIGVIT-ENPVWIIMELCTLGELRSFLQVR-KFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSN 527 (656)
T ss_dssp BCCEEEEEC-SSSCEEEEECCTTCBHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEET
T ss_pred CCeEEEEEe-cCceEEEEEcCCCCcHHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCC
Confidence 999999985 45689999999999999999863 346899999999999999999999 8899999999999999999
Q ss_pred CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcccHHHH
Q 002250 784 WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSKDIVNW 862 (947)
Q Consensus 784 ~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~~~~~~ 862 (947)
+.+||+|||+++......... .....+|+.|+|||++....++.++||||||+++|||++ |..||... ...+....
T Consensus 528 ~~vkL~DFG~a~~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~--~~~~~~~~ 604 (656)
T 2j0j_A 528 DCVKLGDFGLSRYMEDSTYYK-ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV--KNNDVIGR 604 (656)
T ss_dssp TEEEECCCCCCCSCCC-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CHHHHHHH
T ss_pred CCEEEEecCCCeecCCCccee-ccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCC--CHHHHHHH
Confidence 999999999998764433221 223457789999999998899999999999999999997 99998532 11122211
Q ss_pred HHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhcc
Q 002250 863 VYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEA 920 (947)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~ 920 (947)
+. ... ....+...+..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 605 i~---~~~----------~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~i 649 (656)
T 2j0j_A 605 IE---NGE----------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTI 649 (656)
T ss_dssp HH---HTC----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HH---cCC----------CCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 11 111 1112233456788999999999999999999999999875
No 260
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=2.9e-36 Score=334.29 Aligned_cols=261 Identities=19% Similarity=0.241 Sum_probs=204.2
Q ss_pred HhhccCCcccccccCceeEEEEEe-C-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc-
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVL-N-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN- 703 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n- 703 (947)
+.++|++.+.||+|+||+||+|.. . +++.||||++.. .....+.+.+|+++++.++|++
T Consensus 12 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~------------------~~~~~~~~~~e~~~l~~l~~~~~ 73 (339)
T 1z57_A 12 LSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKN------------------VDRYCEAARSEIQVLEHLNTTDP 73 (339)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS------------------SHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEec------------------CCchhHHHHHHHHHHHHhhhcCC
Confidence 347899999999999999999986 3 688999999831 1123466889999999998775
Q ss_pred -----cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCe
Q 002250 704 -----VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNI 778 (947)
Q Consensus 704 -----iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NI 778 (947)
++++++++..++..++||||+ +++|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||
T Consensus 74 ~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Ni 149 (339)
T 1z57_A 74 NSTFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENI 149 (339)
T ss_dssp TCTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGE
T ss_pred CCceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHE
Confidence 999999999999999999999 899999998866667899999999999999999999 88999999999999
Q ss_pred EecC-------------------CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHH
Q 002250 779 LLDL-------------------EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVL 839 (947)
Q Consensus 779 ll~~-------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l 839 (947)
+++. ++.+||+|||.++...... ....||+.|+|||++.+..++.++|||||||++
T Consensus 150 l~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il 224 (339)
T 1z57_A 150 LFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAPEVILALGWSQPCDVWSIGCIL 224 (339)
T ss_dssp EESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHH
T ss_pred EEeccccccccCCccccccccccCCCceEeeCcccccCcccc-----ccccCCccccChHHhhCCCCCcchhhHHHHHHH
Confidence 9987 6789999999998654322 234789999999999998999999999999999
Q ss_pred HHHHhCCCCCCCCCCCcccHHHHHHhhccccc-cc------ccc---------------------cc--CCCCccCHHHH
Q 002250 840 MELVTGKRPIVPEFGDSKDIVNWVYSKMDSRD-SM------LTV---------------------VD--PNISEILKEDA 889 (947)
Q Consensus 840 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~---------------------~d--~~~~~~~~~~~ 889 (947)
|||++|+.||.... ..+....+........ .+ ... .. ...........
T Consensus 225 ~el~~g~~pf~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (339)
T 1z57_A 225 IEYYLGFTVFPTHD--SKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEH 302 (339)
T ss_dssp HHHHHSSCSCCCSC--HHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHH
T ss_pred HHHHhCCCCCCCCC--hHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhH
Confidence 99999999995431 1111111111110000 00 000 00 00011233456
Q ss_pred HHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 890 LKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 890 ~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
..+.+++.+|++.||++|||+.|++++
T Consensus 303 ~~l~~li~~~L~~dP~~Rpt~~ell~h 329 (339)
T 1z57_A 303 ERLFDLIQKMLEYDPAKRITLREALKH 329 (339)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred HHHHHHHHHHhCcCcccccCHHHHhcC
Confidence 789999999999999999999999864
No 261
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.8e-37 Score=346.34 Aligned_cols=268 Identities=21% Similarity=0.272 Sum_probs=184.0
Q ss_pred HHhhccCC-cccccccCceeEEEEEeC---CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc
Q 002250 626 EIIDAVKP-ENLIGKGGSGNVYKVVLN---SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH 701 (947)
Q Consensus 626 ~~~~~~~~-~~~iG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 701 (947)
.+.+.|++ .++||+|+||+||+|+.+ +++.||||++... .....+.+|+.++++++|
T Consensus 17 ~~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~-------------------~~~~~~~~E~~~l~~l~h 77 (405)
T 3rgf_A 17 RVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT-------------------GISMSACREIALLRELKH 77 (405)
T ss_dssp CHHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS-------------------SCCHHHHHHHHHHHHCCC
T ss_pred hhhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC-------------------CCCHHHHHHHHHHHhcCC
Confidence 34466776 568999999999999965 5789999998311 223467899999999999
Q ss_pred cccceEEEEEec--CCccEEEEeccCCCChHHHhhhc-------CCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecc
Q 002250 702 VNVVKLYCSITS--EDSNLLVYEYLPNGSLWDRLHTC-------HKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRD 772 (947)
Q Consensus 702 ~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~-------~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~D 772 (947)
|||+++++++.. +...++||||++ |+|.+++... ....+++..+..++.|++.||+||| +.+|+|||
T Consensus 78 pniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~D 153 (405)
T 3rgf_A 78 PNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRD 153 (405)
T ss_dssp TTBCCCCEEEEETTTTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCC
T ss_pred CCeeeEeeEEecCCCCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCC
Confidence 999999999954 667899999996 5888887632 1234899999999999999999999 88999999
Q ss_pred CCCCCeEe----cCCCCeEEeccccceecccCCC-CcceecccccccccCccccccC-CCCCccchHHHHHHHHHHHhCC
Q 002250 773 VKSSNILL----DLEWKPRIADFGLAKIVQTGEA-GDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLMELVTGK 846 (947)
Q Consensus 773 lkp~NIll----~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~ 846 (947)
|||+|||+ +.++.+||+|||+|+....... ........||+.|+|||++.+. .++.++|||||||++|||++|+
T Consensus 154 lkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~ 233 (405)
T 3rgf_A 154 LKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSE 233 (405)
T ss_dssp CCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSS
T ss_pred cCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCC
Confidence 99999999 6778999999999987654321 1222345789999999999874 4899999999999999999999
Q ss_pred CCCCCCCCC--------cccHHHHHHhhcccccc-ccccc-------------cCCCCccC---------HHHHHHHHHH
Q 002250 847 RPIVPEFGD--------SKDIVNWVYSKMDSRDS-MLTVV-------------DPNISEIL---------KEDALKVLRI 895 (947)
Q Consensus 847 ~p~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~-------------d~~~~~~~---------~~~~~~l~~l 895 (947)
.||...... ...+............. +..+. ........ ......+.++
T Consensus 234 ~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 313 (405)
T 3rgf_A 234 PIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHL 313 (405)
T ss_dssp CTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHH
T ss_pred CCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHH
Confidence 999643221 01111111111000000 00000 00000000 0013467899
Q ss_pred HHhccCCCCCCCCCHHHHHHH
Q 002250 896 AIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 896 ~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+.+|++.||++|||+.|++++
T Consensus 314 l~~~L~~dP~~R~ta~e~L~h 334 (405)
T 3rgf_A 314 LQKLLTMDPIKRITSEQAMQD 334 (405)
T ss_dssp HHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHccCCcccCCCHHHHhcC
Confidence 999999999999999999975
No 262
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=7.9e-37 Score=345.03 Aligned_cols=264 Identities=24% Similarity=0.313 Sum_probs=195.1
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceE
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKL 707 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l 707 (947)
..+|++.+.||+|+||+||+|+...+..||+|++... .....+|+++++.++||||+++
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~---------------------~~~~~~E~~il~~l~h~niv~l 97 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD---------------------KRFKNRELQIMRIVKHPNVVDL 97 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECC---------------------TTSCCHHHHHHHTCCCTTBCCE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecC---------------------cchHHHHHHHHHhCCCCCcceE
Confidence 4679999999999999999999887777999988321 1122369999999999999999
Q ss_pred EEEEecCCc------cEEEEeccCCCChHHHhhh--cCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 708 YCSITSEDS------NLLVYEYLPNGSLWDRLHT--CHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 708 ~~~~~~~~~------~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
++++...+. .++||||++++ +.+.+.. .....+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 98 ~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nil 173 (394)
T 4e7w_A 98 KAFFYSNGDKKDEVFLNLVLEYVPET-VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLL 173 (394)
T ss_dssp EEEEEEESSSSSCEEEEEEEECCSEE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEE
T ss_pred EEEEEecCCCCCceEEEEEeeccCcc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEE
Confidence 999965443 68999999765 4443332 13456899999999999999999999 899999999999999
Q ss_pred ec-CCCCeEEeccccceecccCCCCcceecccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcc
Q 002250 780 LD-LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSK 857 (947)
Q Consensus 780 l~-~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~ 857 (947)
++ .++.+||+|||+|+........ ....||+.|+|||++.+. .++.++||||+||++|||++|+.||..... ..
T Consensus 174 l~~~~~~~kL~DFG~a~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~ 249 (394)
T 4e7w_A 174 LDPPSGVLKLIDFGSAKILIAGEPN---VSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG-ID 249 (394)
T ss_dssp EETTTTEEEECCCTTCEECCTTCCC---CSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HH
T ss_pred EcCCCCcEEEeeCCCcccccCCCCC---cccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HH
Confidence 99 7899999999999876544322 234689999999998765 589999999999999999999999954321 11
Q ss_pred cHHHHHHhhcccc--------ccccccccCCC------CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH--hhcc
Q 002250 858 DIVNWVYSKMDSR--------DSMLTVVDPNI------SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM--LEEA 920 (947)
Q Consensus 858 ~~~~~~~~~~~~~--------~~~~~~~d~~~------~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~--L~~~ 920 (947)
.+........... .......-+.. ..+.......+.+++.+|++.||++|||+.|++++ ++++
T Consensus 250 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~ 328 (394)
T 4e7w_A 250 QLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDEL 328 (394)
T ss_dssp HHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTT
T ss_pred HHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhh
Confidence 1111111100000 00000000000 01122245678999999999999999999999975 4443
No 263
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=6.5e-36 Score=323.07 Aligned_cols=256 Identities=25% Similarity=0.341 Sum_probs=203.7
Q ss_pred HHHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc
Q 002250 624 EKEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV 702 (947)
Q Consensus 624 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 702 (947)
...+.++|++.+.||+|+||.||+|+.. +++.||||++... .........+.+|+.++++++||
T Consensus 17 ~~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~---------------~~~~~~~~~~~~e~~~l~~l~h~ 81 (287)
T 2wei_A 17 QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKA---------------SAKNKDTSTILREVELLKKLDHP 81 (287)
T ss_dssp THHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG---------------GBSSSCHHHHHHHHHHHHTCCCT
T ss_pred HHHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEeccc---------------ccchHHHHHHHHHHHHHHhccCC
Confidence 3566789999999999999999999976 7899999998421 11224457789999999999999
Q ss_pred ccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL 782 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 782 (947)
||+++++++..++..++||||+++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 82 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~ 156 (287)
T 2wei_A 82 NIMKLFEILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLES 156 (287)
T ss_dssp TBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESC
T ss_pred CccEEEEEEeCCCeEEEEEEccCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEec
Confidence 9999999999999999999999999999998764 35899999999999999999999 889999999999999975
Q ss_pred C---CCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 783 E---WKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 783 ~---~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
+ +.+||+|||++........ .....||+.|+|||++.+ .++.++||||||+++|||++|+.||... ..
T Consensus 157 ~~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~ 227 (287)
T 2wei_A 157 KEKDCDIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK-----NE 227 (287)
T ss_dssp SSTTCCEEECSTTGGGTBCCCSS---CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SH
T ss_pred CCCcccEEEeccCcceeecCCCc---cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCC-----CH
Confidence 4 4799999999976544322 123458999999998865 5899999999999999999999998532 11
Q ss_pred HHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 860 VNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.+............ .. +.....+..+.+++.+|++.||++|||+.|+++
T Consensus 228 ~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 228 YDILKRVETGKYAF------DL-PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHHHHHHHHCCCCC------CS-GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHcCCCCC------Cc-hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 12211111111100 00 011123456889999999999999999999997
No 264
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.7e-36 Score=339.27 Aligned_cols=264 Identities=21% Similarity=0.292 Sum_probs=199.7
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +++.||||++.... .......+.+|++++++++||||++
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~niv~ 89 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE----------------HQTYCQRTLREIKILLRFRHENIIG 89 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT----------------CHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc----------------CcHHHHHHHHHHHHHHhcCCCCCcc
Confidence 368999999999999999999965 68899999984211 1123367889999999999999999
Q ss_pred EEEEEecC-----CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 707 LYCSITSE-----DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 707 l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
+++++... ...++||||++ |+|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 90 ~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~ 162 (364)
T 3qyz_A 90 INDIIRAPTIEQMKDVYIVQDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLN 162 (364)
T ss_dssp CCEEECCSSTTTCCCEEEEEECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEC
T ss_pred ceeEEecCCccccceEEEEEcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEEC
Confidence 99999765 35799999996 599999876 35899999999999999999999 89999999999999999
Q ss_pred CCCCeEEeccccceecccCCCCc-ceecccccccccCccccccC-CCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 782 LEWKPRIADFGLAKIVQTGEAGD-LTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 782 ~~~~~kl~DfG~a~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
.++.+||+|||+++......... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.... ..+.
T Consensus 163 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~ 240 (364)
T 3qyz_A 163 TTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH--YLDQ 240 (364)
T ss_dssp TTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSS--GGGH
T ss_pred CCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCC--hHHH
Confidence 99999999999998765432211 12345799999999987654 48999999999999999999999995432 1111
Q ss_pred HHHHHhhccccc-c-cc------------ccccC---CCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 860 VNWVYSKMDSRD-S-ML------------TVVDP---NISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 860 ~~~~~~~~~~~~-~-~~------------~~~d~---~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
............ . +. ....+ ............+.+++.+|++.||++|||+.|++++
T Consensus 241 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 314 (364)
T 3qyz_A 241 LNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH 314 (364)
T ss_dssp HHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 111111100000 0 00 00000 0011122334568899999999999999999999964
No 265
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=2.4e-36 Score=339.76 Aligned_cols=261 Identities=20% Similarity=0.240 Sum_probs=200.7
Q ss_pred hccCCcccccccCceeEEEEEe-CCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-------
Q 002250 629 DAVKPENLIGKGGSGNVYKVVL-NSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR------- 700 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------- 700 (947)
++|++.+.||+|+||+||+|+. .+++.||||++... ......+.+|+.++++++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~------------------~~~~~~~~~e~~~l~~l~~~~~~~~ 80 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD------------------KVYTEAAEDEIKLLQRVNDADNTKE 80 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC------------------HHHHHHHHHHHHHHHHHHHTCCSHH
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC------------------ccchhhhhHHHHHHHHhhcccccch
Confidence 6799999999999999999996 47899999998311 123356788999999886
Q ss_pred ----ccccceEEEEEecCC----ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEec
Q 002250 701 ----HVNVVKLYCSITSED----SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDR-PVIHR 771 (947)
Q Consensus 701 ----h~niv~l~~~~~~~~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~-~ivH~ 771 (947)
||||+++++++...+ ..++||||+ +++|.+++.......+++..+..++.||+.||+||| +. +|+||
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~ 156 (373)
T 1q8y_A 81 DSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHT 156 (373)
T ss_dssp HHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECS
T ss_pred hccccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEec
Confidence 899999999998654 678999999 999999998866667999999999999999999999 77 99999
Q ss_pred cCCCCCeEec------CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhC
Q 002250 772 DVKSSNILLD------LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTG 845 (947)
Q Consensus 772 Dlkp~NIll~------~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg 845 (947)
||||+||+++ ..+.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||++|
T Consensus 157 Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g 231 (373)
T 1q8y_A 157 DIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITG 231 (373)
T ss_dssp CCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred CCChHHeEEeccCCCcCcceEEEcccccccccCCCC-----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhC
Confidence 9999999994 44579999999998764432 234689999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-----cccHHHHHHhhc-----------------ccccccccccc----------CCCCccCHHHHHHHH
Q 002250 846 KRPIVPEFGD-----SKDIVNWVYSKM-----------------DSRDSMLTVVD----------PNISEILKEDALKVL 893 (947)
Q Consensus 846 ~~p~~~~~~~-----~~~~~~~~~~~~-----------------~~~~~~~~~~d----------~~~~~~~~~~~~~l~ 893 (947)
+.||...... ...+........ ........+.. .............+.
T Consensus 232 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (373)
T 1q8y_A 232 DFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEIS 311 (373)
T ss_dssp SCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHH
Confidence 9999644211 111111111000 00000000000 001234567788899
Q ss_pred HHHHhccCCCCCCCCCHHHHHHH
Q 002250 894 RIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 894 ~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
+++.+|++.||++|||+.|++++
T Consensus 312 ~li~~~L~~dP~~Rpt~~ell~h 334 (373)
T 1q8y_A 312 DFLSPMLQLDPRKRADAGGLVNH 334 (373)
T ss_dssp HHHGGGGCSSTTTCBCHHHHHTC
T ss_pred HHHHHHhccCccccCCHHHHhhC
Confidence 99999999999999999999973
No 266
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.7e-36 Score=332.12 Aligned_cols=253 Identities=22% Similarity=0.304 Sum_probs=193.6
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc--cccce
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH--VNVVK 706 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~ 706 (947)
++|++.+.||+|+||.||+|...+++.||||++.... ........+.+|++++++++| |||++
T Consensus 28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~~~~~~iv~ 92 (313)
T 3cek_A 28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEE---------------ADNQTLDSYRNEIAYLNKLQQHSDKIIR 92 (313)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSS---------------CCHHHHHHHHHHHHHHHHHGGGCTTBCC
T ss_pred ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEecccc---------------ccccchHHHHHHHHHHHhccccCCceEE
Confidence 5799999999999999999998889999999984221 011234678899999999974 99999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCe
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKP 786 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~ 786 (947)
+++++..++..++||| +.+++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||++++ +.+
T Consensus 93 ~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~ 165 (313)
T 3cek_A 93 LYDYEITDQYIYMVME-CGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GML 165 (313)
T ss_dssp EEEEEECSSEEEEEEC-CCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEE
T ss_pred EEEEeecCCEEEEEEe-cCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeE
Confidence 9999999999999999 5588999999874 35889999999999999999999 889999999999999964 899
Q ss_pred EEeccccceecccCCCCcceecccccccccCcccccc-----------CCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 002250 787 RIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-----------CKINEKSDVYSFGVVLMELVTGKRPIVPEFGD 855 (947)
Q Consensus 787 kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~ 855 (947)
||+|||+++...............||+.|+|||++.. ..++.++||||||+++|||++|+.||.....
T Consensus 166 kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~- 244 (313)
T 3cek_A 166 KLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN- 244 (313)
T ss_dssp EECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCS-
T ss_pred EEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHH-
Confidence 9999999987654433222334568999999999865 4688899999999999999999999854321
Q ss_pred cccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 856 SKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.............. ...+. ..+..+.+++.+||+.||++|||+.|+++.
T Consensus 245 ---~~~~~~~~~~~~~~------~~~~~---~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 245 ---QISKLHAIIDPNHE------IEFPD---IPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp ---HHHHHHHHHCTTSC------CCCCC---CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ---HHHHHHHHHhcccc------cCCcc---cchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 11111111111110 11111 123568889999999999999999999964
No 267
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.3e-36 Score=339.50 Aligned_cols=261 Identities=20% Similarity=0.260 Sum_probs=182.6
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|... +|+.||||++.... ........+.+|+.+++.++||||+
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~hpnIv 91 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPF---------------QSIIHAKRTYRELRLLKHMKHENVI 91 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTT---------------SSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccc---------------cCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 3478999999999999999999954 78999999984211 1112345678999999999999999
Q ss_pred eEEEEEecC------CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 706 KLYCSITSE------DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 706 ~l~~~~~~~------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
++++++... ...|+|+||+ +++|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIl 164 (367)
T 2fst_X 92 GLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLA 164 (367)
T ss_dssp CCSEEECSCSSGGGCCCCEEEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEE
T ss_pred cEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEE
Confidence 999999764 5679999999 7899998875 45899999999999999999999 899999999999999
Q ss_pred ecCCCCeEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 780 LDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 780 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
++.++.+||+|||+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... ..+
T Consensus 165 l~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~ 237 (367)
T 2fst_X 165 VNEDCELKILDFGLARHTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTD--HID 237 (367)
T ss_dssp ECTTCCEEECC--------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSS--HHH
T ss_pred ECCCCCEEEeecccccccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHH
Confidence 999999999999999865432 224578999999999877 678999999999999999999999995431 111
Q ss_pred HHHHHHhhccc-ccc-cccc---------------ccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 859 IVNWVYSKMDS-RDS-MLTV---------------VDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 859 ~~~~~~~~~~~-~~~-~~~~---------------~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
....+...... ... +..+ -...+..........+.+++.+|+..||++|||+.|++++
T Consensus 238 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 238 QLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp HHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 11111111000 000 0000 0000111112234568899999999999999999999975
No 268
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=1.4e-36 Score=331.21 Aligned_cols=254 Identities=25% Similarity=0.363 Sum_probs=193.2
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|+.. +++.||||++.. .......+.+|+.++++++||||+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~------------------~~~~~~~~~~E~~~l~~l~h~~i~ 65 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH------------------TEEKLSTILSEVMLLASLNHQYVV 65 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEE------------------EHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEec------------------cHHHHHHHHHHHHHHHhcCchHHH
Confidence 4578999999999999999999965 799999998831 112346788999999999999999
Q ss_pred eEEEEEec-------------CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEecc
Q 002250 706 KLYCSITS-------------EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRD 772 (947)
Q Consensus 706 ~l~~~~~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~D 772 (947)
++++++.+ ....++||||+++|+|.+++... ...+++..++.++.|++.||+||| +.+|+|||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~d 141 (303)
T 1zy4_A 66 RYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSE-NLNQQRDEYWRLFRQILEALSYIH---SQGIIHRD 141 (303)
T ss_dssp CEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHS-CGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred HHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhcc-ccccchHHHHHHHHHHHHHHHHHH---hCCeeccc
Confidence 99998865 34578999999999999999863 356788899999999999999999 88999999
Q ss_pred CCCCCeEecCCCCeEEeccccceecccCCC------------CcceecccccccccCccccccC-CCCCccchHHHHHHH
Q 002250 773 VKSSNILLDLEWKPRIADFGLAKIVQTGEA------------GDLTHVIAGTHGYIAPEYAYTC-KINEKSDVYSFGVVL 839 (947)
Q Consensus 773 lkp~NIll~~~~~~kl~DfG~a~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slGv~l 839 (947)
|||+||+++.++.+||+|||.+........ ........||+.|+|||++.+. .++.++||||||+++
T Consensus 142 lkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il 221 (303)
T 1zy4_A 142 LKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIF 221 (303)
T ss_dssp CCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHH
T ss_pred CCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHH
Confidence 999999999999999999999976543210 1112244689999999998764 689999999999999
Q ss_pred HHHHhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 840 MELVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 840 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
|||++ ||.. ..+.............. .........+..+.+++.+|++.||++|||+.|++++
T Consensus 222 ~~l~~---p~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 222 FEMIY---PFST----GMERVNILKKLRSVSIE-------FPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHHHS---CCSS----HHHHHHHHHHHHSTTCC-------CCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHh---ccCC----chhHHHHHHhccccccc-------cCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 99998 5421 11111221111111111 0122233445568899999999999999999999974
No 269
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=2.1e-36 Score=334.34 Aligned_cols=254 Identities=19% Similarity=0.268 Sum_probs=174.7
Q ss_pred HHhhccCCcc-cccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 626 EIIDAVKPEN-LIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 626 ~~~~~~~~~~-~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
.+.++|.+.+ .||+|+||+||+|+.. +++.||||++.. ......+....++.++|||
T Consensus 25 ~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---------------------~~~~~~e~~~~~~~~~h~~ 83 (336)
T 3fhr_A 25 AVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYD---------------------SPKARQEVDHHWQASGGPH 83 (336)
T ss_dssp CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEES---------------------SHHHHHHHHHHHHHTTSTT
T ss_pred cccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecC---------------------cHHHHHHHHHHHHhcCCCC
Confidence 4567888854 6999999999999976 799999999831 1112222333456679999
Q ss_pred cceEEEEEec----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 704 VVKLYCSITS----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 704 iv~l~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
|+++++++.. +...++||||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 84 i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIl 160 (336)
T 3fhr_A 84 IVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLL 160 (336)
T ss_dssp BCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEE
T ss_pred hHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEE
Confidence 9999999876 445789999999999999999866667999999999999999999999 889999999999999
Q ss_pred ecC---CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCc
Q 002250 780 LDL---EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDS 856 (947)
Q Consensus 780 l~~---~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~ 856 (947)
++. ++.+||+|||+++...... .....||+.|+|||++....++.++||||||+++|||++|+.||.......
T Consensus 161 l~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~ 236 (336)
T 3fhr_A 161 YTSKEKDAVLKLTDFGFAKETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQA 236 (336)
T ss_dssp ESCSSTTCCEEECCCTTCEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-------
T ss_pred EEecCCCceEEEeccccceeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchh
Confidence 986 4559999999998654332 223468999999999988889999999999999999999999995432111
Q ss_pred ccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 857 KDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
............. .. .........+..+.+++.+|++.||++|||+.|+++
T Consensus 237 --~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 237 --ISPGMKRRIRLGQ--YG----FPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp ------------------C----CCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred --hhhhHHHhhhccc--cc----cCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0000000000000 00 001111234456889999999999999999999997
No 270
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=2e-36 Score=337.59 Aligned_cols=270 Identities=20% Similarity=0.290 Sum_probs=200.3
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|+.. +|+.||||++.+.. .......+.+|+.++++++||||+
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~E~~~l~~l~h~~iv 72 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD----------------KPLFALRTLREIKILKHFKHENII 72 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS----------------SHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc----------------cchHHHHHHHHHHHHHhCcCCCcC
Confidence 3478999999999999999999966 68999999983211 112345678999999999999999
Q ss_pred eEEEEEecC-----CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 706 KLYCSITSE-----DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 706 ~l~~~~~~~-----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
++++++..+ ...++||||++ ++|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 73 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~ 145 (353)
T 2b9h_A 73 TIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLI 145 (353)
T ss_dssp CEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CeeeeecccccCccceEEEEEeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEE
Confidence 999998764 66799999996 689999876 35899999999999999999999 8899999999999999
Q ss_pred cCCCCeEEeccccceecccCCCCc--------ceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCC
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAGD--------LTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVP 851 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~ 851 (947)
+.++.+||+|||+++......... ......||+.|+|||++.. ..++.++|||||||++|||++|+.||..
T Consensus 146 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 225 (353)
T 2b9h_A 146 NSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPG 225 (353)
T ss_dssp CTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999998765332211 1123468999999998765 6789999999999999999999999954
Q ss_pred CCCCcccHHHHHHhhccccc---ccccc---------------ccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHH
Q 002250 852 EFGDSKDIVNWVYSKMDSRD---SMLTV---------------VDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVV 913 (947)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~---~~~~~---------------~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev 913 (947)
.. ..+............. ..... ............+..+.+++.+|++.||++|||+.|+
T Consensus 226 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 303 (353)
T 2b9h_A 226 RD--YRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEA 303 (353)
T ss_dssp SS--HHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred CC--cHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHH
Confidence 31 1111111111100000 00000 0000111122345678899999999999999999999
Q ss_pred HHH--hhccC
Q 002250 914 VQM--LEEAE 921 (947)
Q Consensus 914 ~~~--L~~~~ 921 (947)
+++ ++...
T Consensus 304 l~hp~~~~~~ 313 (353)
T 2b9h_A 304 LEHPYLQTYH 313 (353)
T ss_dssp HTSGGGTTTC
T ss_pred hcCccccccC
Confidence 973 44443
No 271
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=5.7e-36 Score=334.95 Aligned_cols=268 Identities=19% Similarity=0.238 Sum_probs=188.5
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN 703 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n 703 (947)
....++|++.+.||+|+||+||+|+.. +++.||||++... ......+.+|++.++.++|||
T Consensus 19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~~~~~l~~l~h~n 80 (360)
T 3e3p_A 19 RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD------------------PRFRNRELQIMQDLAVLHHPN 80 (360)
T ss_dssp HHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC------------------TTCCCHHHHHHHHHHHHCCTT
T ss_pred hhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC------------------ccccHHHHHHHHHHHhcCCCC
Confidence 455689999999999999999999975 6899999988321 122345667888889999999
Q ss_pred cceEEEEEecCCc-------cEEEEeccCCCChHHHhhh--cCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCC
Q 002250 704 VVKLYCSITSEDS-------NLLVYEYLPNGSLWDRLHT--CHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVK 774 (947)
Q Consensus 704 iv~l~~~~~~~~~-------~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlk 774 (947)
|+++++++...+. .++||||+++ ++.+.+.. .....+++..+..++.|++.|++|||. ++.+|+|||||
T Consensus 81 iv~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~~~ivH~Dlk 158 (360)
T 3e3p_A 81 IVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHL-PSVNVCHRDIK 158 (360)
T ss_dssp BCCEEEEEEEECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTS-TTTCCBCSCCC
T ss_pred cccHHHhhhccccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhC-CCCCeecCcCC
Confidence 9999999976443 6899999976 55554442 234568899999999999999999993 26899999999
Q ss_pred CCCeEecC-CCCeEEeccccceecccCCCCcceecccccccccCccccccCC-CCCccchHHHHHHHHHHHhCCCCCCCC
Q 002250 775 SSNILLDL-EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCK-INEKSDVYSFGVVLMELVTGKRPIVPE 852 (947)
Q Consensus 775 p~NIll~~-~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~slGv~l~elltg~~p~~~~ 852 (947)
|+||+++. ++.+||+|||+++....... .....||+.|+|||++.+.. ++.++|||||||++|||++|+.||...
T Consensus 159 p~NIll~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 235 (360)
T 3e3p_A 159 PHNVLVNEADGTLKLCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGD 235 (360)
T ss_dssp GGGEEEETTTTEEEECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHHEEEeCCCCcEEEeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 99999996 89999999999987654432 22446899999999987654 899999999999999999999999543
Q ss_pred CCCcccHHHHHHhhccccccc----------ccccc-------CCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 853 FGDSKDIVNWVYSKMDSRDSM----------LTVVD-------PNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~----------~~~~d-------~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
.. ...+.............. ....+ ..+..........+.+++.+|++.||.+|||+.|+++
T Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 236 NS-AGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp SH-HHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred Ch-HHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 11 111111111100000000 00000 0011122234667999999999999999999999996
Q ss_pred H
Q 002250 916 M 916 (947)
Q Consensus 916 ~ 916 (947)
+
T Consensus 315 h 315 (360)
T 3e3p_A 315 H 315 (360)
T ss_dssp S
T ss_pred C
Confidence 4
No 272
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=2.3e-36 Score=338.92 Aligned_cols=260 Identities=20% Similarity=0.261 Sum_probs=196.0
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|.+.+.||+|+||+||+|... +|+.||||++.... ........+.+|+.++++++||||+
T Consensus 40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~niv 104 (371)
T 4exu_A 40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF---------------QSEIFAKRAYRELLLLKHMQHENVI 104 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTT---------------SSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccc---------------cchhHHHHHHHHHHHHHhcCCCCch
Confidence 3478999999999999999999965 68999999984221 0112246788999999999999999
Q ss_pred eEEEEEecCCcc------EEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 706 KLYCSITSEDSN------LLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 706 ~l~~~~~~~~~~------~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
++++++...+.. ++||||++ ++|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl 176 (371)
T 4exu_A 105 GLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLA 176 (371)
T ss_dssp CCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEE
T ss_pred hhhhheeccCCcccceeEEEEEcccc-ccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeE
Confidence 999999887765 99999996 688887753 4899999999999999999999 889999999999999
Q ss_pred ecCCCCeEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 780 LDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 780 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
++.++.+||+|||+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.... ..+
T Consensus 177 l~~~~~~kL~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~ 249 (371)
T 4exu_A 177 VNEDCELKILDFGLARHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLD 249 (371)
T ss_dssp ECTTCCEEECSTTCC-------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSS--HHH
T ss_pred ECCCCCEEEEecCcccccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC--hHH
Confidence 999999999999999855432 224568999999999987 678999999999999999999999995431 111
Q ss_pred HHHHHHhhc-cccccc----------------cccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 859 IVNWVYSKM-DSRDSM----------------LTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 859 ~~~~~~~~~-~~~~~~----------------~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
......... ...... ..................+.+++.+|++.||++|||+.|++++
T Consensus 250 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 250 QLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp HHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 111111000 000000 0000011111222345678999999999999999999999875
No 273
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-35 Score=333.39 Aligned_cols=309 Identities=19% Similarity=0.180 Sum_probs=185.4
Q ss_pred ccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEE
Q 002250 156 KLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNF 235 (947)
Q Consensus 156 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 235 (947)
.+++++.|++++|.++...+..+..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34566666666666665444456667777777777777766666667777777777777777776666667777777777
Q ss_pred eccCCCCCCCCcc-ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccccccccccccccc
Q 002250 236 DVSQNRLEGDLSE-LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLT 314 (947)
Q Consensus 236 ~Ls~N~l~~~~~~-l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (947)
+|++|+++..+.. +..+++|++|+|++|++++..+..|..+++|++|++++|++++. .++.+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 7777777665554 46677777777777777766666777777777777777777643 2455666677777766655
Q ss_pred CCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCccc
Q 002250 315 GPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIG 394 (947)
Q Consensus 315 ~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 394 (947)
+ +....+|+.|++++|.+... |... .++|+.|++++|++++. ..+.
T Consensus 200 ~-----------------------------~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 200 T-----------------------------LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp E-----------------------------EECCSSCSEEECCSSCCCEE-ECCC--CSSCCEEECCSSCCCCC--GGGG
T ss_pred c-----------------------------cCCCCcceEEECCCCeeeec-cccc--cccccEEECCCCCCccc--HHHc
Confidence 2 11223566677777776633 3222 35666777777766643 3455
Q ss_pred ccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCccccccccccee
Q 002250 395 NAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDI 474 (947)
Q Consensus 395 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 474 (947)
.+++|++|++++|++++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..++.+++|+.|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 66666666666666665555556666666666666666652 3444444555555555555554 233344444444455
Q ss_pred eccCceeeeecCCCCCccCcCcEEECCCCccC
Q 002250 475 NFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFS 506 (947)
Q Consensus 475 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 506 (947)
+|++|++++. | +..+++|+.|+|++|+++
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 5555444421 1 333444444444444444
No 274
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=2.7e-36 Score=345.04 Aligned_cols=252 Identities=24% Similarity=0.324 Sum_probs=186.7
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l 707 (947)
+.|...+.||+|+||+||.+...+|+.||||++.. ...+.+.+|+++++++ +||||+++
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~--------------------~~~~~~~~E~~~l~~l~~HpnIv~~ 74 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLI--------------------DFCDIALMEIKLLTESDDHPNVIRY 74 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEG--------------------GGHHHHHHHHHHHHHHTTSTTBCCE
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcH--------------------HHHHHHHHHHHHHHhccCCCCcCeE
Confidence 44556788999999999877767799999998831 1234578899999987 89999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccC-----CHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEM-----DWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL 782 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~-----~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~ 782 (947)
++++..++..++||||++ |+|.+++........ ++..+..++.||+.||+||| +.+|+||||||+||+++.
T Consensus 75 ~~~~~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~ 150 (434)
T 2rio_A 75 YCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVST 150 (434)
T ss_dssp EEEEECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEC
T ss_pred EEEEecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEec
Confidence 999999999999999995 699999986432211 23345679999999999999 899999999999999975
Q ss_pred C-------------CCeEEeccccceecccCCCCc--ceecccccccccCcccccc-------CCCCCccchHHHHHHHH
Q 002250 783 E-------------WKPRIADFGLAKIVQTGEAGD--LTHVIAGTHGYIAPEYAYT-------CKINEKSDVYSFGVVLM 840 (947)
Q Consensus 783 ~-------------~~~kl~DfG~a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~slGv~l~ 840 (947)
+ +.+||+|||+++......... ......||+.|+|||++.+ ..++.++|||||||++|
T Consensus 151 ~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ 230 (434)
T 2rio_A 151 SSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFY 230 (434)
T ss_dssp CHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHH
T ss_pred CcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHH
Confidence 4 489999999998765443211 1224579999999999965 56889999999999999
Q ss_pred HHHh-CCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 841 ELVT-GKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 841 ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
||++ |+.||....... ........ ... ..........+..+.+++.+|++.||++|||+.|+++
T Consensus 231 ellt~g~~Pf~~~~~~~---~~i~~~~~----~~~----~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 231 YILSKGKHPFGDKYSRE---SNIIRGIF----SLD----EMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHTTSCCTTCSTTTHH---HHHHHTCC----CCC----CCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHhCCCCCCCCchhhH---HHHhcCCC----Ccc----cccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 9999 999985432211 11111111 000 0011123456678999999999999999999999986
No 275
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=2.7e-36 Score=332.65 Aligned_cols=253 Identities=24% Similarity=0.342 Sum_probs=175.7
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHH-HHhhccccccce
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVA-TLSAVRHVNVVK 706 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~ 706 (947)
++|+..+.||+|+||.||+|... +|+.||||++.... .......+.+|+. +++.++||||++
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~e~~~~~~~~~h~niv~ 85 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV----------------DEKEQKQLLMDLDVVMRSSDCPYIVQ 85 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC----------------CHHHHHHHHHHHHHHHSSCCCTTBCC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc----------------CchHHHHHHHHHHHHHHcCCCCcEee
Confidence 67889999999999999999975 78999999984221 0112234555555 677789999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhh---cCCccCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEeccCCCCCeEecC
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHT---CHKIEMDWVVRYAIAVGAAKGLEYLHHGFDR-PVIHRDVKSSNILLDL 782 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~---~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~-~ivH~Dlkp~NIll~~ 782 (947)
+++++..++..++||||+++ +|.+++.. .....+++..+..++.|++.||+||| +. +|+||||||+||+++.
T Consensus 86 ~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~ 161 (327)
T 3aln_A 86 FYGALFREGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDR 161 (327)
T ss_dssp EEEEEECSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEET
T ss_pred eeeEEEeCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcC
Confidence 99999999999999999975 88887763 23456899999999999999999999 67 9999999999999999
Q ss_pred CCCeEEeccccceecccCCCCcceecccccccccCcccc----ccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCccc
Q 002250 783 EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYA----YTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKD 858 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~ 858 (947)
++.+||+|||+++....... .....||+.|+|||++ .+..++.++||||||+++|||++|+.||.....
T Consensus 162 ~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---- 234 (327)
T 3aln_A 162 SGNIKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNS---- 234 (327)
T ss_dssp TTEEEECCCSSSCC---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC------
T ss_pred CCCEEEccCCCceecccccc---cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcch----
Confidence 99999999999976543322 2233689999999998 456689999999999999999999999853211
Q ss_pred HHHHHHhhccccccccccccCCC-CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 859 IVNWVYSKMDSRDSMLTVVDPNI-SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
..+......... .+.+ ..........+.+++.+||+.||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 235 VFDQLTQVVKGD-------PPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp -----CCCCCSC-------CCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHhcCC-------CCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 111110010000 0111 1111223456889999999999999999999975
No 276
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=330.59 Aligned_cols=260 Identities=20% Similarity=0.281 Sum_probs=190.6
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|... +++.||||++... .....+.+.+|++++++++||||+
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----------------~~~~~~~~~~e~~~l~~l~h~~iv 71 (320)
T 2i6l_A 9 LGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT-----------------DPQSVKHALREIKIIRRLDHDNIV 71 (320)
T ss_dssp ETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC-----------------SHHHHHHHHHHHHHHHTCCCTTBC
T ss_pred cCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC-----------------ChHHHHHHHHHHHHHHhcCCCCee
Confidence 3578999999999999999999976 5899999988321 112346788999999999999999
Q ss_pred eEEEEEe--------------cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEec
Q 002250 706 KLYCSIT--------------SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHR 771 (947)
Q Consensus 706 ~l~~~~~--------------~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~ 771 (947)
++++++. .....++||||++ |+|.+++.. ..+++..+..++.|++.||+||| +.+|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~ 144 (320)
T 2i6l_A 72 KVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIH---SANVLHR 144 (320)
T ss_dssp CEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCC
T ss_pred EEEEeccccccccccccccccccCceeEEeeccC-CCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHH---hCCEecC
Confidence 9999874 3456789999997 699999875 45889999999999999999999 8899999
Q ss_pred cCCCCCeEec-CCCCeEEeccccceecccCCC-CcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCC
Q 002250 772 DVKSSNILLD-LEWKPRIADFGLAKIVQTGEA-GDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRP 848 (947)
Q Consensus 772 Dlkp~NIll~-~~~~~kl~DfG~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p 848 (947)
||||+||+++ +++.+||+|||+++....... ........+|..|+|||.+.. ..++.++||||||+++|||++|+.|
T Consensus 145 dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~p 224 (320)
T 2i6l_A 145 DLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTL 224 (320)
T ss_dssp CCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCC
Confidence 9999999997 567999999999986543221 111223457999999998865 6789999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHhhccccccc-----cc------------cccC--CCCccCHHHHHHHHHHHHhccCCCCCCCCC
Q 002250 849 IVPEFGDSKDIVNWVYSKMDSRDSM-----LT------------VVDP--NISEILKEDALKVLRIAIHCTNKLPAFRPS 909 (947)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~~d~--~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt 909 (947)
|.... ..+............ .+ ...+ .........+..+.+++.+|++.||++|||
T Consensus 225 f~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 299 (320)
T 2i6l_A 225 FAGAH-----ELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLT 299 (320)
T ss_dssp SCCSS-----HHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCC
T ss_pred CCCCC-----HHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCC
Confidence 95432 111111111000000 00 0000 011122234567889999999999999999
Q ss_pred HHHHHH
Q 002250 910 MRVVVQ 915 (947)
Q Consensus 910 ~~ev~~ 915 (947)
+.|+++
T Consensus 300 ~~ell~ 305 (320)
T 2i6l_A 300 AEEALS 305 (320)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999986
No 277
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=1.7e-35 Score=330.39 Aligned_cols=260 Identities=18% Similarity=0.218 Sum_probs=201.2
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CC-cEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc-
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SG-KELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN- 703 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n- 703 (947)
+.++|++.+.||+|+||+||+|... ++ +.||||++... ......+.+|+.++++++|++
T Consensus 17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~------------------~~~~~~~~~E~~~l~~l~~~~~ 78 (355)
T 2eu9_A 17 LQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV------------------GKYREAARLEINVLKKIKEKDK 78 (355)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC------------------HHHHHHHHHHHHHHHHHHHHCT
T ss_pred ecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc------------------ccchhHHHHHHHHHHHHhhcCC
Confidence 4578999999999999999999965 44 68999998311 123456788999999998877
Q ss_pred -----cceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCe
Q 002250 704 -----VVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNI 778 (947)
Q Consensus 704 -----iv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NI 778 (947)
++.+++++...+..++||||+ ++++.+++.......+++..+..++.|++.||+||| +.+|+||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NI 154 (355)
T 2eu9_A 79 ENKFLCVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENI 154 (355)
T ss_dssp TSCSCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGE
T ss_pred CCceeEEEeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHE
Confidence 999999999999999999999 778888887765567999999999999999999999 89999999999999
Q ss_pred Ee-------------------cCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHH
Q 002250 779 LL-------------------DLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVL 839 (947)
Q Consensus 779 ll-------------------~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l 839 (947)
++ +.++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++
T Consensus 155 ll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il 229 (355)
T 2eu9_A 155 LFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEVILELGWAQPCDVWSIGCIL 229 (355)
T ss_dssp EESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred EEecccccccccccccccccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCeeeecCCCCCccchHHHHHHH
Confidence 99 567899999999998654322 235789999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCcccHHHHHHhhccccc-cc-------cc------cccC----------------CCCccCHHHH
Q 002250 840 MELVTGKRPIVPEFGDSKDIVNWVYSKMDSRD-SM-------LT------VVDP----------------NISEILKEDA 889 (947)
Q Consensus 840 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~------~~d~----------------~~~~~~~~~~ 889 (947)
|||++|+.||.... ..+....+........ .+ .. ..+. ..........
T Consensus 230 ~el~~g~~pf~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
T 2eu9_A 230 FEYYRGFTLFQTHE--NREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEH 307 (355)
T ss_dssp HHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHH
T ss_pred HHHHhCCCCCCCCC--HHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhH
Confidence 99999999995432 1111111111110000 00 00 0000 0001122345
Q ss_pred HHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 890 LKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 890 ~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
..+.+++.+|++.||++|||+.|+++
T Consensus 308 ~~l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 308 VQLFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 67899999999999999999999985
No 278
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=9.3e-36 Score=332.00 Aligned_cols=259 Identities=20% Similarity=0.258 Sum_probs=195.7
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|.+.+.||+|+||.||+|... +|+.||||++.... ........+.+|+.++++++||||++
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---------------~~~~~~~~~~~E~~~l~~l~h~~iv~ 87 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPF---------------QSEIFAKRAYRELLLLKHMQHENVIG 87 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTT---------------SSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccc---------------cchHHHHHHHHHHHHHHhcCCCCccc
Confidence 467889999999999999999965 68999999984211 01122456889999999999999999
Q ss_pred EEEEEecCCc------cEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 707 LYCSITSEDS------NLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 707 l~~~~~~~~~------~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
+++++..... .++||||++ ++|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 88 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~ 159 (353)
T 3coi_A 88 LLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAV 159 (353)
T ss_dssp CSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEE
T ss_pred HhheEecccccccceeEEEEecccc-CCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeE
Confidence 9999987654 499999996 688887753 4899999999999999999999 8899999999999999
Q ss_pred cCCCCeEEeccccceecccCCCCcceecccccccccCcccccc-CCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT-CKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
+.++.+||+|||+++..... .....||+.|+|||++.+ ..++.++||||||+++|||++|+.||.... ..+.
T Consensus 160 ~~~~~~kl~Dfg~~~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~--~~~~ 232 (353)
T 3coi_A 160 NEDCELKILDFGLARHADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKD--YLDQ 232 (353)
T ss_dssp CTTCCEEECSTTCTTC-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSC--HHHH
T ss_pred CCCCcEEEeecccccCCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--HHHH
Confidence 99999999999999764332 223468999999999877 678999999999999999999999995431 1111
Q ss_pred HHHHHhhc-cccc----------------cccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 860 VNWVYSKM-DSRD----------------SMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 860 ~~~~~~~~-~~~~----------------~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
........ .... .+.......+..........+.+++.+|++.||++|||+.|++++
T Consensus 233 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 233 LTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp HHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 11111000 0000 000000111222333445678999999999999999999999864
No 279
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=3e-36 Score=330.93 Aligned_cols=249 Identities=20% Similarity=0.292 Sum_probs=199.3
Q ss_pred HHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc--cc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR--HV 702 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~ 702 (947)
.+.++|++.+.||+|+||.||+|+.. +++.||||++....... .........+.+|+.++++++ ||
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-----------~~~~~~~~~~~~E~~~l~~l~~~~~ 108 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISD-----------WGELPNGTRVPMEVVLLKKVSSGFS 108 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCC-----------EEECTTCCEEEHHHHHHHHHCSSSC
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchh-----------hhhhhhhhHHHHHHHHHHhhccCCC
Confidence 34578999999999999999999954 78999999985322110 000123356778999999996 59
Q ss_pred ccceEEEEEecCCccEEEEeccCC-CChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEec
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPN-GSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLD 781 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~ 781 (947)
||+++++++..++..++||||+.+ ++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 109 ~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~ 183 (320)
T 3a99_A 109 GVIRLLDWFERPDSFVLILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILID 183 (320)
T ss_dssp SBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEE
T ss_pred CceEEEEEEecCCcEEEEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEe
Confidence 999999999999999999999976 8999999863 45889999999999999999999 89999999999999999
Q ss_pred -CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCC-CCccchHHHHHHHHHHHhCCCCCCCCCCCcccH
Q 002250 782 -LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKI-NEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDI 859 (947)
Q Consensus 782 -~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~ 859 (947)
+++.+||+|||+++...... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||...
T Consensus 184 ~~~~~~kL~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------- 252 (320)
T 3a99_A 184 LNRGELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD------- 252 (320)
T ss_dssp TTTTEEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH-------
T ss_pred CCCCCEEEeeCcccccccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh-------
Confidence 78999999999998765432 223468999999999987765 67899999999999999999998421
Q ss_pred HHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 860 VNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
..... .... .....+..+.+++.+||+.||++|||+.|+++.
T Consensus 253 ~~~~~----~~~~-----------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 253 EEIIR----GQVF-----------FRQRVSSECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp HHHHH----CCCC-----------CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred hhhhc----cccc-----------ccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 11111 0000 111223568889999999999999999999874
No 280
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=327.81 Aligned_cols=250 Identities=23% Similarity=0.298 Sum_probs=191.4
Q ss_pred HHHhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc----
Q 002250 625 KEIIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV---- 699 (947)
Q Consensus 625 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l---- 699 (947)
+.+.++|++.+.||+|+||.||+|+.. +++.||||++........ ........+.+|+.++.++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~-----------~~~~~~~~~~~e~~~l~~l~~~~ 95 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGW-----------SPLSDSVTCPLEVALLWKVGAGG 95 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC-------------------CCCCHHHHHHHHHHSSC
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEeccccccc-----------ccchhhHHHHHHHHHHHhhcccC
Confidence 455688999999999999999999964 789999999853321100 0112334566799999999
Q ss_pred cccccceEEEEEecCCccEEEEec-cCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCe
Q 002250 700 RHVNVVKLYCSITSEDSNLLVYEY-LPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNI 778 (947)
Q Consensus 700 ~h~niv~l~~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NI 778 (947)
+||||+++++++..++..++|||| +++++|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||
T Consensus 96 ~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Ni 170 (312)
T 2iwi_A 96 GHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEK--GPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENI 170 (312)
T ss_dssp CCSSBCCEEEEC-----CEEEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGE
T ss_pred CCCCeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhE
Confidence 899999999999999999999999 7899999999874 35899999999999999999999 88999999999999
Q ss_pred Eec-CCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCC-CccchHHHHHHHHHHHhCCCCCCCCCCCc
Q 002250 779 LLD-LEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKIN-EKSDVYSFGVVLMELVTGKRPIVPEFGDS 856 (947)
Q Consensus 779 ll~-~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~slGv~l~elltg~~p~~~~~~~~ 856 (947)
+++ .++.+||+|||+++...... .....||..|+|||++.+..+. .++||||||+++|||++|+.||...
T Consensus 171 l~~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~---- 242 (312)
T 2iwi_A 171 LIDLRRGCAKLIDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD---- 242 (312)
T ss_dssp EEETTTTEEEECCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----
T ss_pred EEeCCCCeEEEEEcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh----
Confidence 999 88999999999998765432 2244689999999999877664 5899999999999999999998421
Q ss_pred ccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 857 KDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
.+... ... .........+.+++.+|++.||++|||+.|++++
T Consensus 243 ---~~~~~----~~~-----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~ 284 (312)
T 2iwi_A 243 ---QEILE----AEL-----------HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLD 284 (312)
T ss_dssp ---HHHHH----TCC-----------CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred ---HHHhh----hcc-----------CCcccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 11111 000 1112234567889999999999999999999974
No 281
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=338.89 Aligned_cols=249 Identities=24% Similarity=0.354 Sum_probs=184.3
Q ss_pred hccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccceE
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVVKL 707 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l 707 (947)
.+|...+.||+|+||+||.....+++.||||++.+ .....+.+|+++++++ +|||||++
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~--------------------~~~~~~~~E~~~l~~l~~HpnIv~l 83 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILP--------------------ECFSFADREVQLLRESDEHPNVIRY 83 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECT--------------------TTEEECHHHHHHHHHSCCCTTBCCE
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECH--------------------HHHHHHHHHHHHHHhccCCCCcCeE
Confidence 35788899999999997765566799999999832 1123457899999999 89999999
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecC-----
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDL----- 782 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~----- 782 (947)
++++.++...|+||||++ |+|.+++.... ....+.....++.||+.||+||| +.+|+||||||+||+++.
T Consensus 84 ~~~~~~~~~~~lv~E~~~-g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~ 158 (432)
T 3p23_A 84 FCTEKDRQFQYIAIELCA-ATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHG 158 (432)
T ss_dssp EEEEEETTEEEEEEECCS-EEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTT
T ss_pred EEEEecCCEEEEEEECCC-CCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCC
Confidence 999999999999999995 69999998643 23444455689999999999999 889999999999999953
Q ss_pred CCCeEEeccccceecccCCC-CcceecccccccccCccccc---cCCCCCccchHHHHHHHHHHHh-CCCCCCCCCCCcc
Q 002250 783 EWKPRIADFGLAKIVQTGEA-GDLTHVIAGTHGYIAPEYAY---TCKINEKSDVYSFGVVLMELVT-GKRPIVPEFGDSK 857 (947)
Q Consensus 783 ~~~~kl~DfG~a~~~~~~~~-~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~slGv~l~ellt-g~~p~~~~~~~~~ 857 (947)
...+||+|||+|+....... ........||+.|+|||++. ...++.++|||||||++|||++ |..||.....
T Consensus 159 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~--- 235 (432)
T 3p23_A 159 KIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ--- 235 (432)
T ss_dssp BCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT---
T ss_pred ceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH---
Confidence 34588999999987654321 12233457999999999997 4567789999999999999999 8889843211
Q ss_pred cHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 858 DIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
..... ... ... .............+.+++.+|++.||++|||+.|+++
T Consensus 236 ~~~~~---~~~-~~~------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 236 RQANI---LLG-ACS------LDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp HHHHH---HTT-CCC------CTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHH---Hhc-cCC------ccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 11111 110 000 0111112234456788999999999999999999984
No 282
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-35 Score=349.42 Aligned_cols=336 Identities=18% Similarity=0.144 Sum_probs=194.7
Q ss_pred cccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEe
Q 002250 157 LEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFD 236 (947)
Q Consensus 157 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 236 (947)
+.+++.|++++|.++...+..+.++++|++|+|++|.|++..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 44556666666666655555566666677777777766666666666666777777777777666666666677777777
Q ss_pred ccCCCCCCCCcc-ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccC
Q 002250 237 VSQNRLEGDLSE-LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTG 315 (947)
Q Consensus 237 Ls~N~l~~~~~~-l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (947)
|++|.+++.+.. +..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++. + ++.+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence 777766665544 46666677777777777766666777777777777777777643 2 4455666666666666542
Q ss_pred CCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccc
Q 002250 316 PIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGN 395 (947)
Q Consensus 316 ~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 395 (947)
+....+|+.|++++|.++...+ .+ .++|+.|+|++|.+++. ..+..
T Consensus 207 -----------------------------l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 207 -----------------------------LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp -----------------------------EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGG
T ss_pred -----------------------------ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhcc
Confidence 1122346666666666653322 22 14566666666666542 34555
Q ss_pred cccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceee
Q 002250 396 AKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDIN 475 (947)
Q Consensus 396 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 475 (947)
+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++ + |..+..+++|+.|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l------------------------~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L------------------------NLYGQPIPTLKVLD 307 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-E------------------------ECSSSCCTTCCEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-C------------------------CcccccCCCCcEEE
Confidence 5555555555555555555555555555555555555542 3 33344455555555
Q ss_pred ccCceeeeecCCCCCccCcCcEEECCCCccCCccCCcccccccceeeCCCCcCCCCCCCcccccccccccccCCCCCCCC
Q 002250 476 FAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLTYPKLSLLDLSNNQLAGPIPEPLNIKAFIDSFTGNPGLCSKT 555 (947)
Q Consensus 476 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~gN~~~c~~~ 555 (947)
|++|.++ .+|..+..+++|+.|+|++|++++..+ ..+++|+.|+|++|++++..+..+-.......+.+|+..|+..
T Consensus 308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCC--CTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCC-ccCcccccCCCCCEEECCCCCCCCcCh--hhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcc
Confidence 5555555 445455555555566666665554321 1235566666666666543322221222334567888899875
Q ss_pred cc
Q 002250 556 DE 557 (947)
Q Consensus 556 ~~ 557 (947)
..
T Consensus 385 ~~ 386 (597)
T 3oja_B 385 YQ 386 (597)
T ss_dssp CE
T ss_pred hh
Confidence 43
No 283
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=9.7e-36 Score=326.94 Aligned_cols=253 Identities=22% Similarity=0.290 Sum_probs=178.6
Q ss_pred hhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccce
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVK 706 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 706 (947)
.++|++.+.||+|+||.||+|+.. +|+.||||++..... .......+.++..+++.++||||++
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------------~~~~~~~~~~~~~~~~~~~h~~i~~ 88 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN---------------KEENKRILMDLDVVLKSHDCPYIVQ 88 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSC---------------HHHHHHHHHHHHHHHHTTTCTTBCC
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEeccccc---------------chHHHHHHHHHHHHHHhcCCCceee
Confidence 478899999999999999999975 789999999842210 0111233445556788889999999
Q ss_pred EEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEeccCCCCCeEecCCCC
Q 002250 707 LYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDR-PVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 707 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~-~ivH~Dlkp~NIll~~~~~ 785 (947)
+++++..++..++||||+ ++.+..+... ....+++..+..++.|++.||+||| +. +|+||||||+||+++.++.
T Consensus 89 ~~~~~~~~~~~~lv~e~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~ 163 (318)
T 2dyl_A 89 CFGTFITNTDVFIAMELM-GTCAEKLKKR-MQGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQ 163 (318)
T ss_dssp EEEEEECSSEEEEEECCC-SEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSC
T ss_pred EEEEEecCCcEEEEEecc-CCcHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCC
Confidence 999999999999999999 5555554443 3456899999999999999999999 64 9999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccc-----cCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAY-----TCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
+||+|||++........ .....||+.|+|||++. ...++.++||||||+++|||++|+.||..... ..
T Consensus 164 ~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~ 236 (318)
T 2dyl_A 164 IKLCDFGISGRLVDDKA---KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT----DF 236 (318)
T ss_dssp EEECCCTTC-----------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCS----HH
T ss_pred EEEEECCCchhccCCcc---ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCc----cH
Confidence 99999999976544322 22346899999999984 45688999999999999999999999853211 11
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHH
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQ 915 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~ 915 (947)
+........... .++ .....+..+.+++.+||+.||.+|||+.|+++
T Consensus 237 ~~~~~~~~~~~~-------~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 237 EVLTKVLQEEPP-------LLP-GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp HHHHHHHHSCCC-------CCC-SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHhccCCC-------CCC-ccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 111111111111 010 01123356888999999999999999999986
No 284
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.2e-35 Score=347.76 Aligned_cols=270 Identities=24% Similarity=0.323 Sum_probs=201.2
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
..++|++.+.||+|+||+||+|... +|+.||||++.... .......+.+|++++++++||||+
T Consensus 12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~----------------~~~~~~~~~~Ei~iL~~L~HpnIV 75 (676)
T 3qa8_A 12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL----------------SPKNRERWCLEIQIMKKLNHPNVV 75 (676)
T ss_dssp -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC----------------CHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC----------------CHHHHHHHHHHHHHHHhCCCCCCC
Confidence 3588999999999999999999964 68999999884211 112346788999999999999999
Q ss_pred eEEEEEec------CCccEEEEeccCCCChHHHhhhcC-CccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCe
Q 002250 706 KLYCSITS------EDSNLLVYEYLPNGSLWDRLHTCH-KIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNI 778 (947)
Q Consensus 706 ~l~~~~~~------~~~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NI 778 (947)
++++++.. ++..++||||+++|+|.+++.... ...+++..+..++.|++.||+||| +.+|+||||||+||
T Consensus 76 ~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NI 152 (676)
T 3qa8_A 76 SAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENI 152 (676)
T ss_dssp CEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTE
T ss_pred ceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHe
Confidence 99999765 667799999999999999998743 235888889999999999999999 89999999999999
Q ss_pred EecCCCC---eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCC
Q 002250 779 LLDLEWK---PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGD 855 (947)
Q Consensus 779 ll~~~~~---~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~ 855 (947)
+++.++. +||+|||.+........ .....||+.|+|||++.+..++.++||||||+++|||++|+.||.+..
T Consensus 153 Ll~~~g~~~~vKL~DFG~a~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~-- 227 (676)
T 3qa8_A 153 VLQPGPQRLIHKIIDLGYAKELDQGEL---CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW-- 227 (676)
T ss_dssp EEECCSSSCEEEECSCCCCCBTTSCCC---CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC--
T ss_pred EeecCCCceeEEEcccccccccccccc---cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc--
Confidence 9997765 99999999987654432 234578999999999999999999999999999999999999996431
Q ss_pred cccHHHHHHhhccccc---cccc------ccc---CCCCccCHHHHHHHHHHHHhccCCCCCCCCCHHH-----HHHHhh
Q 002250 856 SKDIVNWVYSKMDSRD---SMLT------VVD---PNISEILKEDALKVLRIAIHCTNKLPAFRPSMRV-----VVQMLE 918 (947)
Q Consensus 856 ~~~~~~~~~~~~~~~~---~~~~------~~d---~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~e-----v~~~L~ 918 (947)
....|......... .... .+. +.........+..+.+++.+|++.||++|||+.| +.+.++
T Consensus 228 --~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~ 305 (676)
T 3qa8_A 228 --QPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALD 305 (676)
T ss_dssp --HHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHH
T ss_pred --chhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHH
Confidence 11111110000000 0000 000 1112344456778999999999999999999987 445555
Q ss_pred ccCC
Q 002250 919 EAEP 922 (947)
Q Consensus 919 ~~~~ 922 (947)
.+..
T Consensus 306 ~iL~ 309 (676)
T 3qa8_A 306 SILS 309 (676)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 5443
No 285
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=2.5e-35 Score=317.31 Aligned_cols=235 Identities=14% Similarity=0.122 Sum_probs=184.0
Q ss_pred HhhccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 627 IIDAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 627 ~~~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
+.++|++.+.||+|+||.||+|+.. +++.||||++...... .......+.+|+.++++++||||+
T Consensus 29 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~--------------~~~~~~~~~~e~~~l~~l~hp~iv 94 (286)
T 3uqc_A 29 ANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVL--------------PDDVLQETLSRTLRLSRIDKPGVA 94 (286)
T ss_dssp TTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCS--------------CHHHHHHHHHHHHHHHTCCCTTBC
T ss_pred ecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECccccc--------------CHHHHHHHHHHHHHHhcCCCCCcc
Confidence 3477999999999999999999976 5899999998532110 012336788999999999999999
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCC
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWK 785 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~ 785 (947)
++++++..++..|+||||+++++|.++++.. .......+++.|++.||+||| +.+|+||||||+||+++.++.
T Consensus 95 ~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~ 167 (286)
T 3uqc_A 95 RVLDVVHTRAGGLVVAEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGD 167 (286)
T ss_dssp CEEEEEEETTEEEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSC
T ss_pred eeeEEEEECCcEEEEEEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCC
Confidence 9999999999999999999999999999652 344567889999999999999 899999999999999999999
Q ss_pred eEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Q 002250 786 PRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYS 865 (947)
Q Consensus 786 ~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~ 865 (947)
+||+++| |++| ++.++|||||||++|||+||+.||........
T Consensus 168 ~kl~~~~----------------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~-------- 210 (286)
T 3uqc_A 168 VVLAYPA----------------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSG-------- 210 (286)
T ss_dssp EEECSCC----------------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCC--------
T ss_pred EEEEecc----------------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchh--------
Confidence 9998543 3333 67899999999999999999999964321100
Q ss_pred hccccccccccccCCC---CccCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHhhccCCCC
Q 002250 866 KMDSRDSMLTVVDPNI---SEILKEDALKVLRIAIHCTNKLPAFRPSMRVVVQMLEEAEPCS 924 (947)
Q Consensus 866 ~~~~~~~~~~~~d~~~---~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~L~~~~~~~ 924 (947)
. ........... .......+..+.+++.+||+.||++| |+.|+++.|+++....
T Consensus 211 -~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 211 -L---APAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp -S---EECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred -h---HHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence 0 00000001111 12223345668899999999999999 9999999999977654
No 286
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.3e-34 Score=317.16 Aligned_cols=152 Identities=25% Similarity=0.373 Sum_probs=84.4
Q ss_pred cccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCC
Q 002250 128 SLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNK 207 (947)
Q Consensus 128 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 207 (947)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|+|++|.+++ + ..+.++++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~--~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI--Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC--T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTT
T ss_pred cchhcccccEEEEeCCccccc--h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCc
Confidence 355677777777777777553 2 255666666666666666643 22 6666666666666666653 2 24566666
Q ss_pred CcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCc
Q 002250 208 LWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTN 287 (947)
Q Consensus 208 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 287 (947)
|++|++++|.+++..+ +..+++|++|++++|.....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 6666666666653322 555555555555555444344444555555555555555442222 444444444444444
Q ss_pred ccc
Q 002250 288 RLT 290 (947)
Q Consensus 288 ~l~ 290 (947)
+++
T Consensus 188 ~l~ 190 (347)
T 4fmz_A 188 QIE 190 (347)
T ss_dssp CCC
T ss_pred ccc
Confidence 444
No 287
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.8e-34 Score=315.84 Aligned_cols=194 Identities=25% Similarity=0.377 Sum_probs=102.4
Q ss_pred cccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCC
Q 002250 104 LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQ 183 (947)
Q Consensus 104 l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 183 (947)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+... +. +..+++|++|++++|.+++ + +.+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~--~~~~~~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ--GIEYLTNLEYLNLNGNQITDI--SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTT
T ss_pred chhcccccEEEEeCCcccc-ch--hhhhcCCccEEEccCCccccc--hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCc
Confidence 3455566666666666543 22 355566666666666655542 22 5556666666666666653 2 24556666
Q ss_pred CCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCc
Q 002250 184 LQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFEN 263 (947)
Q Consensus 184 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N 263 (947)
|++|+|++|++.+. +. +..+++|++|++++|..... +..+..+++|++|++++|.+.+... +..+++|++|++++|
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN 187 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC
Confidence 66666666665533 22 55566666666666644322 2235566666666666666554433 555566666666666
Q ss_pred cCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccc
Q 002250 264 QFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLL 313 (947)
Q Consensus 264 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 313 (947)
.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc
Confidence 6553222 5555555555555555542222 33344444444444433
No 288
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=2.5e-34 Score=312.48 Aligned_cols=232 Identities=23% Similarity=0.317 Sum_probs=183.0
Q ss_pred HHHHhhccCCc-ccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHH-hhcc
Q 002250 624 EKEIIDAVKPE-NLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATL-SAVR 700 (947)
Q Consensus 624 ~~~~~~~~~~~-~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l-~~l~ 700 (947)
...+.++|.+. +.||+|+||.||+|... +++.||||++. ....+.+|+.++ +..+
T Consensus 12 ~~~~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~----------------------~~~~~~~e~~~~~~~~~ 69 (299)
T 3m2w_A 12 KNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ----------------------DCPKARREVELHWRASQ 69 (299)
T ss_dssp CSCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE----------------------CSHHHHHHHHHHHHHTT
T ss_pred ccccccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEec----------------------ccHHHHHHHHHHHHhcc
Confidence 34556778887 78999999999999964 78999999982 234677899988 5559
Q ss_pred ccccceEEEEEec----CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCC
Q 002250 701 HVNVVKLYCSITS----EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSS 776 (947)
Q Consensus 701 h~niv~l~~~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~ 776 (947)
||||+++++++.. +...++||||+++|+|.+++.......+++..+..++.|++.||+||| +.+|+||||||+
T Consensus 70 h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~ 146 (299)
T 3m2w_A 70 CPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPE 146 (299)
T ss_dssp STTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGG
T ss_pred CCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHH
Confidence 9999999999876 667899999999999999999866667999999999999999999999 899999999999
Q ss_pred CeEecC---CCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Q 002250 777 NILLDL---EWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEF 853 (947)
Q Consensus 777 NIll~~---~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~ 853 (947)
||+++. ++.+||+|||++.... +..++.++||||+||++|||++|+.||....
T Consensus 147 Nil~~~~~~~~~~kl~Dfg~a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~ 202 (299)
T 3m2w_A 147 NLLYTSKRPNAILKLTDFGFAKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNH 202 (299)
T ss_dssp GEEESSSSTTCCEEECCCTTCEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--
T ss_pred HEEEecCCCCCcEEEeccccccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCc
Confidence 999998 7889999999986432 1346778999999999999999999995331
Q ss_pred CCcccHHHHHHhhccccccccccccCCCCccC----HHHHHHHHHHHHhccCCCCCCCCCHHHHHHH
Q 002250 854 GDSKDIVNWVYSKMDSRDSMLTVVDPNISEIL----KEDALKVLRIAIHCTNKLPAFRPSMRVVVQM 916 (947)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~l~~l~~~cl~~dP~~RPt~~ev~~~ 916 (947)
... . .... ...........+ ...+..+.+++.+|++.||++|||+.|++++
T Consensus 203 ~~~-----~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 203 GLA-----I-SPGM------KTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp -----------CCS------CCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred chh-----h-hHHH------HHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 100 0 0000 000000001111 2235678899999999999999999999973
No 289
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.7e-34 Score=347.45 Aligned_cols=239 Identities=21% Similarity=0.268 Sum_probs=190.7
Q ss_pred hhccCCcccccccCceeEEEEEeC--CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccc
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLN--SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVV 705 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv 705 (947)
.++|++.+.||+|+||+||+|... +++.||||++.... .......+.+|+.++++++||||+
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~----------------~~~~~~~~~~E~~~l~~l~hp~iv 142 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG----------------DAEAQAMAMAERQFLAEVVHPSIV 142 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC----------------CHHHHHHHHHHHGGGGGCCCTTBC
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC----------------CHHHHHHHHHHHHHHHhcCCCCcC
Confidence 478999999999999999999975 68999999884211 112345688999999999999999
Q ss_pred eEEEEEecCCc-----cEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 706 KLYCSITSEDS-----NLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 706 ~l~~~~~~~~~-----~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
++++++...+. .|+||||+++++|.+++.. .+++..+..++.||+.||+||| +.+|+||||||+||++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll 215 (681)
T 2pzi_A 143 QIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIML 215 (681)
T ss_dssp CEEEEEEEECTTSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEE
T ss_pred eEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEE
Confidence 99999988766 6999999999999987764 5899999999999999999999 8899999999999999
Q ss_pred cCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHH
Q 002250 781 DLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIV 860 (947)
Q Consensus 781 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~ 860 (947)
+.+ .+||+|||+++..... ....||+.|+|||++.++ ++.++|||||||++|||++|..||.......
T Consensus 216 ~~~-~~kl~DFG~a~~~~~~------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~---- 283 (681)
T 2pzi_A 216 TEE-QLKLIDLGAVSRINSF------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG---- 283 (681)
T ss_dssp CSS-CEEECCCTTCEETTCC------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS----
T ss_pred eCC-cEEEEecccchhcccC------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc----
Confidence 986 9999999999876443 245699999999998765 4889999999999999999998874321100
Q ss_pred HHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCCCCCC-HHHHHHHhhc
Q 002250 861 NWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPAFRPS-MRVVVQMLEE 919 (947)
Q Consensus 861 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-~~ev~~~L~~ 919 (947)
.. . ..........+.+++.+|++.||++||+ +.++.+.|..
T Consensus 284 ------------~~----~--~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 325 (681)
T 2pzi_A 284 ------------LP----E--DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG 325 (681)
T ss_dssp ------------CC----T--TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred ------------cc----c--cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence 00 0 0011223457889999999999999995 5556565554
No 290
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.4e-32 Score=303.40 Aligned_cols=294 Identities=21% Similarity=0.281 Sum_probs=197.9
Q ss_pred cCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEecc
Q 002250 159 KLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVS 238 (947)
Q Consensus 159 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 238 (947)
+|+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666666 4555443 577778888777776666777777778888888888777777778888888888888
Q ss_pred CCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc--ccCCcCccCcccccccccccccccCC
Q 002250 239 QNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT--GTLPQKLGSWADFNYVDVSENLLTGP 316 (947)
Q Consensus 239 ~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (947)
+|+++..+..+. ++|++|++++|++++..+..|..+++|++|++++|+++ +..|..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 887776665544 68888888888888666667888888999999999886 3667777777 88888888888773
Q ss_pred CCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCccccc
Q 002250 317 IPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNA 396 (947)
Q Consensus 317 ~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 396 (947)
+|..+ . ++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+
T Consensus 187 l~~~~------------------------~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 187 IPKDL------------------------P--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CCSSS------------------------C--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred cCccc------------------------c--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 33211 1 456667777777776666677777777777777777777666667777
Q ss_pred ccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeec
Q 002250 397 KSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINF 476 (947)
Q Consensus 397 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 476 (947)
++|++|++++|+++ .+|..+..+++|+.|++++|+|++..+..|..... -....+|+.|++
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------~~~~~~l~~L~l 301 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF------------------GVKRAYYNGISL 301 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC------------------CSSSCCBSEEEC
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc------------------ccccccccceEe
Confidence 77777777777776 56666666666666666666666544444432200 001244555666
Q ss_pred cCceee--eecCCCCCccCcCcEEECCCCc
Q 002250 477 AQNSLS--GKIPDSLGSLPSLNSLNLSNNK 504 (947)
Q Consensus 477 s~N~l~--~~~p~~~~~l~~L~~L~Ls~N~ 504 (947)
++|.+. +..|..|..+++|+.|+|++|+
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecCcccccccCcccccccchhhhhhccccc
Confidence 666554 4455556666666666666653
No 291
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=8.3e-34 Score=322.22 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=177.2
Q ss_pred hccCCcccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc-cccc-
Q 002250 629 DAVKPENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH-VNVV- 705 (947)
Q Consensus 629 ~~~~~~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv- 705 (947)
..|+..+.||+|+||+||+|+.. +|+.||||++..... ......+.+.+|+.+++.++| +|..
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~--------------~~~~~~~~~~~E~~~~~~l~~~~~~~~ 143 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTER--------------PPSNAIKQMKEEVLRLRLLRGIKNQKQ 143 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC------------------CCHHHHHHHHGGGGSTTCCSHHH
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCC--------------ccHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 45777889999999999999954 799999999842211 112345779999999999977 2211
Q ss_pred --------------------eEEEEEec-----CCccEEEEeccCCCChHHHhhh-----cCCccCCHHHHHHHHHHHHH
Q 002250 706 --------------------KLYCSITS-----EDSNLLVYEYLPNGSLWDRLHT-----CHKIEMDWVVRYAIAVGAAK 755 (947)
Q Consensus 706 --------------------~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~-----~~~~~~~~~~~~~i~~~ia~ 755 (947)
.+..++.. ....+++|+++ +++|.+++.. .....+++..++.++.|++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~ 222 (413)
T 3dzo_A 144 AKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIR 222 (413)
T ss_dssp HHHHTCBCCCCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHH
Confidence 11111111 12346777766 7899998852 23456788899999999999
Q ss_pred HHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccccccccCcccc----------ccCC
Q 002250 756 GLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYA----------YTCK 825 (947)
Q Consensus 756 ~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~ 825 (947)
||+||| +.+|+||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ ....
T Consensus 223 aL~~LH---~~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~ 293 (413)
T 3dzo_A 223 LLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTL 293 (413)
T ss_dssp HHHHHH---HTTEECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEE
T ss_pred HHHHHH---hCCcccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcC
Confidence 999999 899999999999999999999999999999865432 234467 999999999 5556
Q ss_pred CCCccchHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHHHHHHHHHHHHhccCCCCC
Q 002250 826 INEKSDVYSFGVVLMELVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKEDALKVLRIAIHCTNKLPA 905 (947)
Q Consensus 826 ~~~~~Dv~slGv~l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~l~~~cl~~dP~ 905 (947)
++.++|||||||++|||++|+.||...... .....++. .... .+..+.+++.+||+.||+
T Consensus 294 ~~~~~DvwSlGvil~elltg~~Pf~~~~~~---------------~~~~~~~~-~~~~----~~~~~~~li~~~l~~dP~ 353 (413)
T 3dzo_A 294 MTFAFDTWTLGLAIYWIWCADLPNTDDAAL---------------GGSEWIFR-SCKN----IPQPVRALLEGFLRYPKE 353 (413)
T ss_dssp ECHHHHHHHHHHHHHHHHHSSCCCCTTGGG---------------SCSGGGGS-SCCC----CCHHHHHHHHHHTCSSGG
T ss_pred CCchhhHHHHHHHHHHHHHCCCCCCCcchh---------------hhHHHHHh-hccc----CCHHHHHHHHHHccCChh
Confidence 888999999999999999999999532110 00011111 1112 235688999999999999
Q ss_pred CCCCHHHHH
Q 002250 906 FRPSMRVVV 914 (947)
Q Consensus 906 ~RPt~~ev~ 914 (947)
+|||+.|++
T Consensus 354 ~Rpt~~~~l 362 (413)
T 3dzo_A 354 DRLLPLQAM 362 (413)
T ss_dssp GSCCHHHHT
T ss_pred hCcCHHHHH
Confidence 999977664
No 292
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.5e-34 Score=310.23 Aligned_cols=248 Identities=27% Similarity=0.476 Sum_probs=149.8
Q ss_pred CCCEEEccCccCcc--cCCCCccCCCcCcEEEccC-ccccccCCcCccCcccccccccccccccCCCCCCcccCCcccee
Q 002250 254 QLSSLHLFENQFSG--EIPEEFGEFKHLTELSLYT-NRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDL 330 (947)
Q Consensus 254 ~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L 330 (947)
+++.|+|++|.+++ .+|..|..+++|++|+|++ |.+.+.+|..|+.+++|++|++++|.+++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------- 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------- 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE---------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC---------------
Confidence 45555555555555 5555555555555555553 55555555555555555555555555443
Q ss_pred eecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccc-cccEEEccCccc
Q 002250 331 LVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAK-SLALLLLANNRF 409 (947)
Q Consensus 331 ~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l 409 (947)
.+|..|.++++|++|++++|.+++.+|..+..+++|++|+|++|++++.+|..+..+. .|++|++++|++
T Consensus 116 ---------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 116 ---------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ---------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ---------cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 4444555566666666666666666666666666666666666666655666666655 666666666666
Q ss_pred cccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCC
Q 002250 410 SGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSL 489 (947)
Q Consensus 410 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 489 (947)
++.+|..+..++ |+.|+|++|++++.+|..|..+++|+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 666666666665 66666666666666666666666666666666666654444 5566666666666666666666666
Q ss_pred CccCcCcEEECCCCccCCccCCcccccccceeeCCCCc
Q 002250 490 GSLPSLNSLNLSNNKFSGEIPISLTYPKLSLLDLSNNQ 527 (947)
Q Consensus 490 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~ 527 (947)
..+++|+.|+|++|+++|.+|....+++|+.|++++|+
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred hcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 66666666666666666666655445556655555444
No 293
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.4e-32 Score=301.30 Aligned_cols=295 Identities=20% Similarity=0.273 Sum_probs=174.1
Q ss_pred cCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEecc
Q 002250 159 KLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVS 238 (947)
Q Consensus 159 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 238 (947)
+|+.++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555555 3444443 466677777777765555566667777777777777766666667777777777777
Q ss_pred CCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccc--cCCcCccCcccccccccccccccCC
Q 002250 239 QNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTG--TLPQKLGSWADFNYVDVSENLLTGP 316 (947)
Q Consensus 239 ~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (947)
+|+++..+..+. ++|++|++++|++++..+..|..+++|++|++++|+++. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 777665544433 567777777777776666667777777777777777752 556666667777777777776652
Q ss_pred CCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCccccc
Q 002250 317 IPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNA 396 (947)
Q Consensus 317 ~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 396 (947)
+|..+ . ++|+.|++++|.+++..|..+..+++|+.|+|++|++++..+..+..+
T Consensus 186 l~~~~------------------------~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 186 IPQGL------------------------P--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CCSSC------------------------C--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred CCccc------------------------c--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 22211 1 355566666666665555556666666666666666665555555555
Q ss_pred ccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeec
Q 002250 397 KSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINF 476 (947)
Q Consensus 397 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 476 (947)
++|++|++++|+++ .+|..+..+++|+.|++++|+|++..+..|.... ......+|+.|++
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l 300 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSL 300 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEEC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEe
Confidence 66666666666655 5555555556666666666666544433332210 0001244555555
Q ss_pred cCceeee--ecCCCCCccCcCcEEECCCCc
Q 002250 477 AQNSLSG--KIPDSLGSLPSLNSLNLSNNK 504 (947)
Q Consensus 477 s~N~l~~--~~p~~~~~l~~L~~L~Ls~N~ 504 (947)
++|.+.. ..|..|..+.+|+.++|++|+
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ecCcccccccCccccccccceeEEEecccC
Confidence 5555542 344555666666666666664
No 294
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=6.8e-34 Score=314.60 Aligned_cols=251 Identities=16% Similarity=0.131 Sum_probs=186.4
Q ss_pred hhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-------
Q 002250 628 IDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR------- 700 (947)
Q Consensus 628 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~------- 700 (947)
.++|++.+.||+|+||+||+|+. +|+.||||++........ ........+.+.+|+.+++.++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~---------~~~~~~~~~~~~~E~~~l~~l~~l~~~~~ 88 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLV---------NGSHQKTFEEILPEIIISKELSLLSGEVC 88 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCB---------TTBCCBCHHHHHHHHHHHHHHHHGGGCSS
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCcccc---------ccccchhHHHHHHHHHHHHHHHHhhcccc
Confidence 47899999999999999999998 589999999954322100 0012234477889999999886
Q ss_pred --ccccceEEEEE-----------------ec-------------CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHH
Q 002250 701 --HVNVVKLYCSI-----------------TS-------------EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYA 748 (947)
Q Consensus 701 --h~niv~l~~~~-----------------~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~ 748 (947)
||||+++.+.+ .. ++..|+||||+++|++.+.+.+ ..+++..+..
T Consensus 89 ~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~ 165 (336)
T 2vuw_A 89 NRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKS 165 (336)
T ss_dssp SBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHH
T ss_pred ccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHH
Confidence 66666666553 32 6788999999999987777654 4579999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCC--------------------CeEEeccccceecccCCCCcceec
Q 002250 749 IAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEW--------------------KPRIADFGLAKIVQTGEAGDLTHV 808 (947)
Q Consensus 749 i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~ 808 (947)
++.||+.||+|||+ +.+|+||||||+|||++.++ .+||+|||+|+..... .
T Consensus 166 i~~qi~~aL~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~ 236 (336)
T 2vuw_A 166 ILHQLTASLAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------I 236 (336)
T ss_dssp HHHHHHHHHHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------E
T ss_pred HHHHHHHHHHHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------c
Confidence 99999999999993 37899999999999999887 8999999999876532 3
Q ss_pred ccccccccCccccccCCCCCccchHHHHHH-HHHHHhCCCCCCCCCCCcccHHHHHHhhccccccccccccCCCCccCHH
Q 002250 809 IAGTHGYIAPEYAYTCKINEKSDVYSFGVV-LMELVTGKRPIVPEFGDSKDIVNWVYSKMDSRDSMLTVVDPNISEILKE 887 (947)
Q Consensus 809 ~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 887 (947)
.+||+.|+|||++.+.. +.++||||+|++ .+++++|..||.. ............... .............
T Consensus 237 ~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 307 (336)
T 2vuw_A 237 VVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN-----VLWLHYLTDKMLKQM---TFKTKCNTPAMKQ 307 (336)
T ss_dssp EECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH-----HHHHHHHHHHHHHTC---CCSSCCCSHHHHH
T ss_pred EEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcc-----hhhhhHHHHhhhhhh---ccCcccchhhhhh
Confidence 47999999999998665 889999998777 7889999999721 000000111110000 0001112334556
Q ss_pred HHHHHHHHHHhccCCCCCCCCCHHHHH
Q 002250 888 DALKVLRIAIHCTNKLPAFRPSMRVVV 914 (947)
Q Consensus 888 ~~~~l~~l~~~cl~~dP~~RPt~~ev~ 914 (947)
....+.+++.+|++.| |+.|++
T Consensus 308 ~s~~~~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 308 IKRKIQEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHHHHHHHGGGSS-----SHHHHH
T ss_pred cCHHHHHHHHHHhccC-----CHHHHH
Confidence 7788999999999976 999988
No 295
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.4e-31 Score=293.39 Aligned_cols=219 Identities=23% Similarity=0.266 Sum_probs=104.3
Q ss_pred ccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCceeeC
Q 002250 62 ALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSL 140 (947)
Q Consensus 62 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~L 140 (947)
+++.++++++.+. .+|..+. ++|++|+|++|+|++.++ .+..+++|++|+|++|++++..| ..|.++++|++|+|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEEC
Confidence 4555666666653 2333322 456666666666665444 35555555555555555554333 44555555555555
Q ss_pred CCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccc
Q 002250 141 GDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSG 220 (947)
Q Consensus 141 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (947)
++|.++. +|..+. ++|++|++++|++++..+..+.++++|++|++++|.++.
T Consensus 108 s~n~l~~--------------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 108 SKNQLKE--------------------------LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CSSCCSB--------------------------CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCcCCc--------------------------cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 5555543 222221 344444444444443333344444444444444444432
Q ss_pred --cCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCcc
Q 002250 221 --RLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLG 298 (947)
Q Consensus 221 --~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 298 (947)
..+..|..+++|++|++++|+++..+..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 333444444444444444444443333222 4455555555555444444455555555555555555444444444
Q ss_pred Cccccccccccccccc
Q 002250 299 SWADFNYVDVSENLLT 314 (947)
Q Consensus 299 ~l~~L~~L~Ls~N~l~ 314 (947)
.+++|++|++++|.++
T Consensus 238 ~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV 253 (330)
T ss_dssp GSTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCcCc
Confidence 4444444444444443
No 296
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1.5e-31 Score=295.16 Aligned_cols=287 Identities=19% Similarity=0.258 Sum_probs=200.0
Q ss_pred CccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccccccccccc
Q 002250 231 NLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSE 310 (947)
Q Consensus 231 ~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 310 (947)
+|+.+++++|.++..+..+. ++|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..|+.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 34455555555544443332 4556666666666655555666666666666666666655566666666666666666
Q ss_pred ccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEccccccc--ccCCCCCCCCCCcceeccccCCcCCC
Q 002250 311 NLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLS--GTIPPGIWSLPNLSIIDLSTNQFEGP 388 (947)
Q Consensus 311 N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~ 388 (947)
|.++ .+|..+. ..|++|++.+|++.+..+..|.++++|+.|++++|.++ +..|..+..+ +|+.|++++|++++.
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 6665 4444443 45666666666666555667888888888888888885 3667777777 888888888888864
Q ss_pred CCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccc
Q 002250 389 VTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSC 468 (947)
Q Consensus 389 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 468 (947)
+. .+. ++|++|++++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+
T Consensus 188 ~~-~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 188 PK-DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CS-SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred Cc-ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 33 332 67888888888888777778888888888888888888777777888888888888888887 677778888
Q ss_pred cccceeeccCceeeeecCCCCCcc------CcCcEEECCCCccC--CccCCccc-ccccceeeCCCCc
Q 002250 469 VSLTDINFAQNSLSGKIPDSLGSL------PSLNSLNLSNNKFS--GEIPISLT-YPKLSLLDLSNNQ 527 (947)
Q Consensus 469 ~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~~~-~~~L~~L~ls~N~ 527 (947)
++|+.|++++|++++..+..|..+ .+|+.|++++|.+. +..|..+. +++|+.+++++|+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888888887666666553 56888888888887 55555554 5788888888874
No 297
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.9e-32 Score=298.39 Aligned_cols=267 Identities=18% Similarity=0.203 Sum_probs=178.3
Q ss_pred CcccccccCCccccccc----cCCCCCcccceeeeCC---------CCceeEeccCCCccccccCcccccCCcccceeec
Q 002250 2 NLKSKIEKSDTGVFSSW----TEANSVCKFNGIVCDS---------NGLVAEINLPEQQLLGVVPFDSICGLQALQKINL 68 (947)
Q Consensus 2 ~~k~~~~~~~~~~~~sw----~~~~~~C~w~gv~c~~---------~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L 68 (947)
+||..+..|+.+++++| ..+.++|.|.|++|+. .++|+.|+|+++++. .+| ..++.+++|++|+|
T Consensus 34 ~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L 111 (328)
T 4fcg_A 34 QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTI 111 (328)
T ss_dssp HHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEE
T ss_pred HHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC-hhhhhCCCCCEEEC
Confidence 57888877888899999 5677899999999963 245555555555544 333 23555555555555
Q ss_pred cCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCC
Q 002250 69 GTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPS 148 (947)
Q Consensus 69 ~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 148 (947)
++|.+. .+|..+..+++|++|+|++|.++..++.+..+++|++|+|++|++.+.+| ..+.. +
T Consensus 112 ~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~------~---------- 173 (328)
T 4fcg_A 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP-EPLAS------T---------- 173 (328)
T ss_dssp ESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC-SCSEE------E----------
T ss_pred CCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC-hhHhh------c----------
Confidence 555554 45555555555555555555555433345555555555555555444444 12211 0
Q ss_pred CCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCC
Q 002250 149 PFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSN 228 (947)
Q Consensus 149 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 228 (947)
.++..+..+++|++|+|++|+++ .+|..++++++|++|+|++|+++ .+|..+..+++|++|+|++|.+.+.+|..|..
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 00112334777777777777777 66777777777777777777776 35556777777888888887777777777778
Q ss_pred CCCccEEeccCCCCCCC-CccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc
Q 002250 229 LTNLMNFDVSQNRLEGD-LSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 229 l~~L~~L~Ls~N~l~~~-~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 290 (947)
+++|++|+|++|++.+. +..+..+++|+.|+|++|.+.+.+|..++.+++|+.+++..|.+.
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888766553 446777888888888888888888888888888888888877665
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.3e-36 Score=347.23 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=53.3
Q ss_pred cceEEEcccCcccCC----CCcccccccccchhhccccccCCCCCccccc-----ccccceeeccCceeee----ecCCC
Q 002250 422 SLVSIQLSLNQFSGQ----IPLDIGKLKKLSSLYLHDNMFSGPLPYSIGS-----CVSLTDINFAQNSLSG----KIPDS 488 (947)
Q Consensus 422 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~ 488 (947)
+|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++..+..+.. .++|+.|+|++|++++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 444444444444432 2333344455555555555544333332221 4466666666666664 55666
Q ss_pred CCccCcCcEEECCCCccCCccCCcc------cccccceeeCCCCcCC
Q 002250 489 LGSLPSLNSLNLSNNKFSGEIPISL------TYPKLSLLDLSNNQLA 529 (947)
Q Consensus 489 ~~~l~~L~~L~Ls~N~l~~~~p~~~------~~~~L~~L~ls~N~l~ 529 (947)
+..+++|++|+|++|++++.-...+ ...+|+.|++.++.+.
T Consensus 394 l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 6666666666666666654311111 0124566666655554
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.9e-35 Score=339.93 Aligned_cols=356 Identities=17% Similarity=0.146 Sum_probs=225.1
Q ss_pred cccceeeccCccccCcCchh-hhcCCCccEEeCcCccCcCC-----CCCcccccccceeecCCCCccCccCcccccccC-
Q 002250 61 QALQKINLGTNFLYGTITEG-LKSCTRLQVLDLGNNSFSGE-----VPDLSMLHELSFLNLNSSGISGKFPWKSLENLT- 133 (947)
Q Consensus 61 ~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~Ls~n~i~~~-----~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~- 133 (947)
++|+.|+|++|++.+..... +..+++|++|+|++|++++. +..+..+++|++|+|++|.+.+..+...+..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777775544333 66777777777777777642 223556677777777777776432212223344
Q ss_pred ---CCceeeCCCCCCCCC---CCChhhcccccCcEEEccCccccccCCccC-----CCCCCCCEEECcCccccccc----
Q 002250 134 ---NLEFLSLGDNPFDPS---PFPMEVLKLEKLYWLYLTNCSVTGQIPEGI-----GNLTQLQNLELSDNELFGEI---- 198 (947)
Q Consensus 134 ---~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~~---- 198 (947)
+|++|+|++|.++.. .++..+..+++|++|+|++|.+++..+..+ ...++|++|+|++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 577777777776542 235556677777777777777764433322 23457888888888776533
Q ss_pred CccccCCCCCcEEEeecccccccCCccCC-----CCCCccEEeccCCCCCCC-----CccccccCCCCEEEccCccCccc
Q 002250 199 PAGIVKLNKLWQLELYNNSLSGRLPVGFS-----NLTNLMNFDVSQNRLEGD-----LSELRFLNQLSSLHLFENQFSGE 268 (947)
Q Consensus 199 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~-----~~~l~~l~~L~~L~L~~N~i~~~ 268 (947)
+..+..+++|++|+|++|.+++..+..+. .+++|++|+|++|.++.. +..+..+++|++|+|++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45556677888888888887754444433 256788888888877763 34466677888888888877643
Q ss_pred C-----CCCccCCCcCcEEEccCcccccc----CCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCC
Q 002250 269 I-----PEEFGEFKHLTELSLYTNRLTGT----LPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNG 339 (947)
Q Consensus 269 ~-----~~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~ 339 (947)
. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++..+..+...
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--------------- 307 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET--------------- 307 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH---------------
Confidence 2 22233577888888888888743 56666777888888888887763322211110
Q ss_pred cCCccccCCCCccEEEccccccccc----CCCCCCCCCCcceeccccCCcCCCCCCcccc-----cccccEEEccCcccc
Q 002250 340 TVPETYANCKSLIRFRVNNNSLSGT----IPPGIWSLPNLSIIDLSTNQFEGPVTDDIGN-----AKSLALLLLANNRFS 410 (947)
Q Consensus 340 ~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~ 410 (947)
.....++|+.|++++|.+++. ++..+..+++|+.|+|++|++++..+..+.. .++|++|++++|+++
T Consensus 308 ----l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 308 ----LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp ----HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ----hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 011224666777777766644 3444455667777777777766543333332 457777777777776
Q ss_pred c----cCCCCCCCCCcceEEEcccCcccC
Q 002250 411 G----ELPSKISEASSLVSIQLSLNQFSG 435 (947)
Q Consensus 411 ~----~~p~~~~~l~~L~~L~Ls~N~l~~ 435 (947)
+ .+|..+..+++|+.|+|++|++++
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 5 566667777777777777777764
No 300
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.2e-30 Score=281.10 Aligned_cols=281 Identities=22% Similarity=0.257 Sum_probs=225.5
Q ss_pred cccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCC---C
Q 002250 25 CKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGE---V 101 (947)
Q Consensus 25 C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~---~ 101 (947)
|.|.+|.|+..+. ..+|. .+ .++|+.|+|++|.+....+..|..+++|++|+|++|.++.. +
T Consensus 7 C~~~~l~c~~~~l------------~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNSKGL------------TSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCSSCC------------SSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCCCCc------------ccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 8999999986541 12331 11 25899999999999877777789999999999999999854 3
Q ss_pred CCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCC
Q 002250 102 PDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNL 181 (947)
Q Consensus 102 ~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 181 (947)
..+..+++|++|+|++|.+.+ ++ ..+..+++|++|++++|.+...+....+..+++|++|++++|.+++..+..+..+
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~~-l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVIT-MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEEE-EE-EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred cccccccccCEEECCCCcccc-Ch-hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 446778999999999999984 44 4688999999999999998876544578889999999999999998888889999
Q ss_pred CCCCEEECcCccccc-ccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCc-cccccCCCCEEE
Q 002250 182 TQLQNLELSDNELFG-EIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLS-ELRFLNQLSSLH 259 (947)
Q Consensus 182 ~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~ 259 (947)
++|++|+|++|.+++ ..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++.+. .+..+++|+.|+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeE
Confidence 999999999999976 578889999999999999999998888889999999999999999987655 577888999999
Q ss_pred ccCccCcccCCCCccCCC-cCcEEEccCccccccCC--cCccCcccccccccccccccCCCCCCcc
Q 002250 260 LFENQFSGEIPEEFGEFK-HLTELSLYTNRLTGTLP--QKLGSWADFNYVDVSENLLTGPIPPDMC 322 (947)
Q Consensus 260 L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 322 (947)
|++|++++..|..+..++ +|++|+|++|++++.-+ ....-+...+.+.+..+.+.+..|..+.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 999999888888888884 89999999998874321 1122234455566666666655555443
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-30 Score=290.59 Aligned_cols=286 Identities=20% Similarity=0.255 Sum_probs=221.8
Q ss_pred ccccCCCCCcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCc
Q 002250 16 SSWTEANSVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNN 95 (947)
Q Consensus 16 ~sw~~~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n 95 (947)
..|.....+|.|.|+ ||-. ++++ ..+|. .+ .++|+.|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 21 ~~~~~~~~~C~~~~~-c~~~---------~~~l-~~iP~-~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-CKGS---------SGSL-NSIPS-GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86 (353)
T ss_dssp ------CCEECTTSE-EECC---------STTC-SSCCT-TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cCCCccCCCCCCCeE-eeCC---------CCCc-ccccc-cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC
Confidence 356667778999998 8742 2222 23342 22 258999999999998888889999999999999999
Q ss_pred cCcCCCCC-cccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCc-ccccc
Q 002250 96 SFSGEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNC-SVTGQ 173 (947)
Q Consensus 96 ~i~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 173 (947)
++++..+. +..+++|++|+|++|++++ ++...+.++++|++|+|++|+++..+....+..+++|++|++++| .+++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 87 GINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred ccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 99987664 8999999999999999985 443568899999999999999986543246788999999999998 47777
Q ss_pred CCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCc----cc
Q 002250 174 IPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLS----EL 249 (947)
Q Consensus 174 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~l 249 (947)
.+..|.++++|++|++++|++++..|..+.++++|++|++++|.++...+..+..+++|++|++++|++++... ..
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence 77888899999999999999988888889999999999999999875444445668899999999998887432 23
Q ss_pred cccCCCCEEEccCccCcc----cCCCCccCCCcCcEEEccCccccccCCcC-ccCcccccccccccccccCCC
Q 002250 250 RFLNQLSSLHLFENQFSG----EIPEEFGEFKHLTELSLYTNRLTGTLPQK-LGSWADFNYVDVSENLLTGPI 317 (947)
Q Consensus 250 ~~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~ 317 (947)
.....++.++|+++.+++ .+|..+..+++|++|+|++|+++ .+|.. |+.+++|++|++++|++++..
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 346678888888888875 35667888888999999999888 55555 588888888888888887543
No 302
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.4e-33 Score=333.44 Aligned_cols=432 Identities=13% Similarity=0.044 Sum_probs=255.9
Q ss_pred CCCcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccc---cCcCc------------hhhhcCCC
Q 002250 22 NSVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFL---YGTIT------------EGLKSCTR 86 (947)
Q Consensus 22 ~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i---~~~~~------------~~l~~l~~ 86 (947)
.-|+.|.++.+....++. +.+. ....+...+..+++|+.|+|+++.. .+.+| .....+++
T Consensus 39 ~vck~W~~~~~~~~~~l~---~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSETREHVT---MALC--YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHHCCEEE---ESCG--GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhccccEEE---Eeec--cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 346689998654333222 2221 1222334566788899999976432 12222 22237899
Q ss_pred ccEEeCcCccCcCCCCC-ccc-c-cccceeecCCCC-ccCccCcccccccCCCceeeCCCCCCCCCC---CChhhccccc
Q 002250 87 LQVLDLGNNSFSGEVPD-LSM-L-HELSFLNLNSSG-ISGKFPWKSLENLTNLEFLSLGDNPFDPSP---FPMEVLKLEK 159 (947)
Q Consensus 87 L~~L~Ls~n~i~~~~~~-l~~-l-~~L~~L~L~~n~-i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~---~~~~~~~l~~ 159 (947)
|++|+|++|.+++.... +.. + ++|++|+|++|. ++.........++++|++|+|++|.+.... ++.....+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 99999999988764332 444 3 349999999887 221111123347899999999999876544 3334567889
Q ss_pred CcEEEccCcccc----ccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeeccccc---ccCCccCCCCCCc
Q 002250 160 LYWLYLTNCSVT----GQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLS---GRLPVGFSNLTNL 232 (947)
Q Consensus 160 L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L 232 (947)
|++|++++|.++ +.++..+.++++|++|+|++|.+.+ ++..+.++++|++|+++++... ...+..+..+++|
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 999999999887 3344455678899999999998874 6678888899999999864433 2344567778888
Q ss_pred cEEeccCCCCCCCCccccccCCCCEEEccCccCcccCC-CCccCCCcCcEEEccCcccc-ccCCcCccCccccccccccc
Q 002250 233 MNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIP-EEFGEFKHLTELSLYTNRLT-GTLPQKLGSWADFNYVDVSE 310 (947)
Q Consensus 233 ~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~ 310 (947)
+.|+++++.....+..+..+++|++|+|++|.+++... ..+..+++|++|+++ |.+. +.++..+..+++|++|++++
T Consensus 273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence 89988887666566667778889999999888765433 335778888998888 4443 33444446678888888883
Q ss_pred -----------ccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCC-CCCccee
Q 002250 311 -----------NLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWS-LPNLSII 378 (947)
Q Consensus 311 -----------N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L 378 (947)
|.+++... +..+..+++|++|+++.|.+++..+..+.. +++|+.|
T Consensus 352 g~~~~~~~~~~~~~~~~~~-----------------------~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGL-----------------------IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHH-----------------------HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEE
T ss_pred CccccccccccCccCHHHH-----------------------HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEE
Confidence 44442111 111223445555555555544433333332 4455555
Q ss_pred ccc----cCCcCCC-----CCCcccccccccEEEccCc--cccccCCCCCC-CCCcceEEEcccCcccC-CCCccccccc
Q 002250 379 DLS----TNQFEGP-----VTDDIGNAKSLALLLLANN--RFSGELPSKIS-EASSLVSIQLSLNQFSG-QIPLDIGKLK 445 (947)
Q Consensus 379 ~Ls----~N~l~~~-----~~~~~~~l~~L~~L~L~~N--~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~ 445 (947)
+++ .|.+++. ++..+..+++|++|++++| .+++..+..+. .+++|+.|+|++|++++ .++..+.+++
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 553 3444432 1112334455555555432 23332222222 24455555555555543 2233334455
Q ss_pred ccchhhccccccCCC-CCcccccccccceeeccCceeee
Q 002250 446 KLSSLYLHDNMFSGP-LPYSIGSCVSLTDINFAQNSLSG 483 (947)
Q Consensus 446 ~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~ 483 (947)
+|++|+|++|.+++. ++..+..+++|++|+|++|++++
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 555555555554432 22223345555555555555553
No 303
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.1e-29 Score=297.26 Aligned_cols=298 Identities=25% Similarity=0.306 Sum_probs=154.0
Q ss_pred CccccccccCCCCCcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEE
Q 002250 11 DTGVFSSWTEANSVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVL 90 (947)
Q Consensus 11 ~~~~~~sw~~~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 90 (947)
--..+++|..+.+||.|.|..|.-. ....|...+++.|++++|+++ .+|..+. ++|++|
T Consensus 8 ~~~~w~~W~~~~~~~~~~~r~~~~~------------------~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L 66 (622)
T 3g06_A 8 YDAVWSAWRRAAPAEESRGRAAVVQ------------------KMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTL 66 (622)
T ss_dssp --CHHHHHHHTCCGGGHHHHHHHHH------------------HHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEE
T ss_pred HHHHHHHHHhcCCcchhccccccCc------------------ccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEE
Confidence 3467889998899999987554210 011122234566666666664 4454443 567777
Q ss_pred eCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccc
Q 002250 91 DLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSV 170 (947)
Q Consensus 91 ~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l 170 (947)
+|++|.|++.++ .+++|++|+|++|+|++ +|. .+++|++|+|++|.++..+ . .+++|+.|++++|++
T Consensus 67 ~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~l~--~---~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 67 VIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV----LPPGLLELSIFSNPLTHLP--A---LPSGLCKLWIFGNQL 133 (622)
T ss_dssp EECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC----CCTTCCEEEECSCCCCCCC--C---CCTTCCEEECCSSCC
T ss_pred EecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC----CCCCCCEEECcCCcCCCCC--C---CCCCcCEEECCCCCC
Confidence 777777664433 45666666666666652 331 4566666666666665422 2 345566666666665
Q ss_pred cccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCcccc
Q 002250 171 TGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELR 250 (947)
Q Consensus 171 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~ 250 (947)
++ +|.. +++|++|+|++|++++ +|. .+.+|+.|++++|.|++ +| ..+++|+.|+|++|++++.+..
T Consensus 134 ~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~-- 199 (622)
T 3g06_A 134 TS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPTL-- 199 (622)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCC--
T ss_pred Cc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCCc--
Confidence 53 3332 2556666666666553 232 23445555566555553 33 2345555555555555443321
Q ss_pred ccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCcccee
Q 002250 251 FLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDL 330 (947)
Q Consensus 251 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L 330 (947)
+++|+.|++++|.++ .+|.. +++|++|+|++|++++ +| ..+
T Consensus 200 -~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l------------------------------ 240 (622)
T 3g06_A 200 -PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP------------------------------ 240 (622)
T ss_dssp -CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC------------------------------
T ss_pred -cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC------------------------------
Confidence 234444455554444 22221 2344444444444442 22 122
Q ss_pred eecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCcccc
Q 002250 331 LVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFS 410 (947)
Q Consensus 331 ~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 410 (947)
++|+.|++++|.|+ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.++
T Consensus 241 ------------------~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 241 ------------------SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ------------------TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred ------------------CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 34444555555554 2333 3445555555555555 33445555566666666666665
Q ss_pred ccCCCCCC
Q 002250 411 GELPSKIS 418 (947)
Q Consensus 411 ~~~p~~~~ 418 (947)
+..|..+.
T Consensus 298 ~~~~~~l~ 305 (622)
T 3g06_A 298 ERTLQALR 305 (622)
T ss_dssp HHHHHHHH
T ss_pred CcCHHHHH
Confidence 55554443
No 304
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.8e-33 Score=331.83 Aligned_cols=407 Identities=18% Similarity=0.157 Sum_probs=233.2
Q ss_pred CcCchhhhcCCCccEEeCcCccCc---CCCC-Ccc------------cccccceeecCCCCccCccCcccccc-cC-CCc
Q 002250 75 GTITEGLKSCTRLQVLDLGNNSFS---GEVP-DLS------------MLHELSFLNLNSSGISGKFPWKSLEN-LT-NLE 136 (947)
Q Consensus 75 ~~~~~~l~~l~~L~~L~Ls~n~i~---~~~~-~l~------------~l~~L~~L~L~~n~i~~~~~~~~l~~-l~-~L~ 136 (947)
...+..+..+++|++|+|++|... +..| .++ .+++|++|+|++|.+++..+ ..+.. ++ +|+
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~L~ 141 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL-DRLAKARADDLE 141 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHHGGGCC
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHH-HHHHHhccccCc
Confidence 445566788999999999886431 1222 222 56677777777776654332 23333 23 377
Q ss_pred eeeCCCCC-CCCCCCChhhcccccCcEEEccCcccccc----CCccCCCCCCCCEEECcCcccc----cccCccccCCCC
Q 002250 137 FLSLGDNP-FDPSPFPMEVLKLEKLYWLYLTNCSVTGQ----IPEGIGNLTQLQNLELSDNELF----GEIPAGIVKLNK 207 (947)
Q Consensus 137 ~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~----~~~~~~l~~l~~ 207 (947)
+|+|++|. +....++.....+++|++|+|++|.+++. ++..+..+++|++|+|++|.++ +.++..+.++++
T Consensus 142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 77776664 22111222233566666666666666544 2223345566666666666664 223333445666
Q ss_pred CcEEEeecccccccCCccCCCCCCccEEeccCCCCC----CCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEE
Q 002250 208 LWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLE----GDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELS 283 (947)
Q Consensus 208 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 283 (947)
|++|+|++|.+.+ ++..+..+++|++|+++.+... .....+..+++|+.|+++++... .+|..+..+++|++|+
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLD 299 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEE
T ss_pred CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEe
Confidence 6666666666663 4455666666666666542211 11223445555666655554332 3444555555566666
Q ss_pred ccCccccccCC-cCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEccc----
Q 002250 284 LYTNRLTGTLP-QKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNN---- 358 (947)
Q Consensus 284 L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~---- 358 (947)
|++|.+++... ..+..+++|+.|+++ |.+. .+.++..+..+++|++|++++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~-----------------------~~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIG-----------------------DRGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGH-----------------------HHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc-CccC-----------------------HHHHHHHHHhCCCCCEEEeecCccc
Confidence 66555543222 223445555555554 2222 112333445677888888883
Q ss_pred -------ccccccCCC-CCCCCCCcceeccccCCcCCCCCCcccc-cccccEEEcc----Ccccccc-----CCCCCCCC
Q 002250 359 -------NSLSGTIPP-GIWSLPNLSIIDLSTNQFEGPVTDDIGN-AKSLALLLLA----NNRFSGE-----LPSKISEA 420 (947)
Q Consensus 359 -------n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~~~~l 420 (947)
|.+++.... ....+++|+.|+++.|++++..+..+.. +++|+.|+++ .|.+++. ++..+..+
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 555533222 2334778888888888887655555554 7778888885 5666642 22235567
Q ss_pred CcceEEEcccCc--ccCCCCccccc-ccccchhhccccccCCC-CCcccccccccceeeccCceeeee-cCCCCCccCcC
Q 002250 421 SSLVSIQLSLNQ--FSGQIPLDIGK-LKKLSSLYLHDNMFSGP-LPYSIGSCVSLTDINFAQNSLSGK-IPDSLGSLPSL 495 (947)
Q Consensus 421 ~~L~~L~Ls~N~--l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 495 (947)
++|+.|+|++|. +++..+..++. +++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++. ++..+..+++|
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc
Confidence 778888886433 55444444443 67788888888877652 344456677788888888877644 33334567778
Q ss_pred cEEECCCCccCCc
Q 002250 496 NSLNLSNNKFSGE 508 (947)
Q Consensus 496 ~~L~Ls~N~l~~~ 508 (947)
+.|+|++|++++.
T Consensus 516 ~~L~ls~n~it~~ 528 (592)
T 3ogk_B 516 RYLWVQGYRASMT 528 (592)
T ss_dssp CEEEEESCBCCTT
T ss_pred CeeECcCCcCCHH
Confidence 8888888887754
No 305
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.2e-29 Score=270.44 Aligned_cols=262 Identities=19% Similarity=0.182 Sum_probs=154.0
Q ss_pred CCCEEECcCcccccccCccccCCCCCcEEEeeccccccc--CCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEc
Q 002250 183 QLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGR--LPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHL 260 (947)
Q Consensus 183 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L 260 (947)
+|++|+|++|+++...+..|.++++|++|+|++|.++.. .+..+..+++|++|+|++|.++..+..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 445555555554433223344455555555555554421 133344455555555555555444444555555555555
Q ss_pred cCccCcccCC-CCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCC
Q 002250 261 FENQFSGEIP-EEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNG 339 (947)
Q Consensus 261 ~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~ 339 (947)
++|++++..+ ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++.
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------- 165 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----------------------- 165 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG-----------------------
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc-----------------------
Confidence 5555554333 3566666666666666666655556666666666666666655420
Q ss_pred cCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCC
Q 002250 340 TVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISE 419 (947)
Q Consensus 340 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 419 (947)
.+|..+..+++|+.|++++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 23445666677777777777777666777777788888888888887766667777778888888888887777777777
Q ss_pred CC-cceEEEcccCcccCCCC--cccccccccchhhccccccCCCCCccccc
Q 002250 420 AS-SLVSIQLSLNQFSGQIP--LDIGKLKKLSSLYLHDNMFSGPLPYSIGS 467 (947)
Q Consensus 420 l~-~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 467 (947)
++ +|+.|+|++|.+++.-+ .....+..++.+....+.+....|..+.+
T Consensus 246 ~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred hhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 74 78888888888774321 11222334444444455554444444433
No 306
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.6e-29 Score=278.67 Aligned_cols=275 Identities=16% Similarity=0.147 Sum_probs=178.9
Q ss_pred cEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccccccccccccc
Q 002250 233 MNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENL 312 (947)
Q Consensus 233 ~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 312 (947)
...++++|.++..+..+. ++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|+.+++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 344555555555444333 356666666666665555566666666666666666665556666666666666666666
Q ss_pred ccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCC-CCCCCCCCcceeccccC-CcCCCCC
Q 002250 313 LTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIP-PGIWSLPNLSIIDLSTN-QFEGPVT 390 (947)
Q Consensus 313 l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~~ 390 (947)
+++ ..+..|.++++|++|++++|++++..+ ..+..+++|++|++++| .+....+
T Consensus 112 l~~------------------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 112 LSN------------------------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CSS------------------------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred CCc------------------------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 652 112235556666666666666663333 35666777777777776 3555556
Q ss_pred CcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccc---c
Q 002250 391 DDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIG---S 467 (947)
Q Consensus 391 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~ 467 (947)
..|..+++|++|++++|++++..|..+..+++|+.|++++|+++...+..+..+++|+.|+|++|.+++..+..+. .
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 6677777777777777777766777777777777777777777633333344577777777777777765554433 3
Q ss_pred ccccceeeccCceeee----ecCCCCCccCcCcEEECCCCccCCccCCcc-cccccceeeCCCCcCCCCCC
Q 002250 468 CVSLTDINFAQNSLSG----KIPDSLGSLPSLNSLNLSNNKFSGEIPISL-TYPKLSLLDLSNNQLAGPIP 533 (947)
Q Consensus 468 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~L~~L~ls~N~l~~~~p 533 (947)
...++.++|++|.+++ .+|..+..+++|+.|+|++|+++..++..+ .+++|+.|+|++|++++..|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 4556677777776665 467777888888888888888885444433 46888888888888887666
No 307
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.9e-28 Score=277.22 Aligned_cols=254 Identities=20% Similarity=0.212 Sum_probs=193.8
Q ss_pred CCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeec
Q 002250 254 QLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVL 333 (947)
Q Consensus 254 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~ 333 (947)
..+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------ 102 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT------------------ 102 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE------------------
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc------------------
Confidence 3566777777777 5665554 567777777777776666777777777777777777653
Q ss_pred ccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCc-ccccc
Q 002250 334 QNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANN-RFSGE 412 (947)
Q Consensus 334 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 412 (947)
..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|++|++++| .+...
T Consensus 103 ------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 103 ------IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp ------ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred ------cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence 33456777888888888888888666667888888888888888888777778888888888888884 44433
Q ss_pred CCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCcc
Q 002250 413 LPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSL 492 (947)
Q Consensus 413 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 492 (947)
.+..|..+++|+.|+|++|+++ .+| .+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred CcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 4446888888888888888888 555 47788888888888888888888888888888888888888888888888888
Q ss_pred CcCcEEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCCCcccccccccccccCCCCCCCCccc
Q 002250 493 PSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIPEPLNIKAFIDSFTGNPGLCSKTDEY 558 (947)
Q Consensus 493 ~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~gN~~~c~~~~~~ 558 (947)
++|+.|+|++|+|++.++..+. +++|+.|+|+ +|||.|+|...|
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~----------------------~Np~~CdC~l~~ 299 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH----------------------HNPWNCNCDILW 299 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC----------------------SSCEECSSTTHH
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcC----------------------CCCccCCCCchH
Confidence 8888888888888877666554 4777777665 566678877655
No 308
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.4e-29 Score=274.65 Aligned_cols=250 Identities=20% Similarity=0.242 Sum_probs=206.2
Q ss_pred ccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcC-CCCC-cc-------cccccceeecCCCCccCccC
Q 002250 55 DSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSG-EVPD-LS-------MLHELSFLNLNSSGISGKFP 125 (947)
Q Consensus 55 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~-l~-------~l~~L~~L~L~~n~i~~~~~ 125 (947)
..+++.++|+.|++++|.+ .+|..+... |+.|+|++|+++. ..+. +. .+++|++|+|++|++++.+|
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3467788999999999999 778777766 9999999999954 3443 33 68999999999999998877
Q ss_pred cccc-cccCCCceeeCCCCCCCCCCCChhhccc-----ccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccc--
Q 002250 126 WKSL-ENLTNLEFLSLGDNPFDPSPFPMEVLKL-----EKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGE-- 197 (947)
Q Consensus 126 ~~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-- 197 (947)
...+ ..+++|++|+|++|+++.. |..+..+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 4332 8999999999999999875 6677777 8999999999999988889999999999999999998764
Q ss_pred cCccc--cCCCCCcEEEeecccccc---cCCccCCCCCCccEEeccCCCCCCCC--ccccccCCCCEEEccCccCcccCC
Q 002250 198 IPAGI--VKLNKLWQLELYNNSLSG---RLPVGFSNLTNLMNFDVSQNRLEGDL--SELRFLNQLSSLHLFENQFSGEIP 270 (947)
Q Consensus 198 ~~~~l--~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~l~~l~~L~~L~L~~N~i~~~~~ 270 (947)
.+..+ .++++|++|+|++|+|++ .....+..+++|++|+|++|++++.. ..+..+++|++|+|++|+|+ .+|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 23444 788999999999999983 22244567899999999999998865 45667889999999999998 677
Q ss_pred CCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccC
Q 002250 271 EEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTG 315 (947)
Q Consensus 271 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (947)
..+. ++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7776 8899999999999855 66 8889999999999999875
No 309
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=4.7e-29 Score=272.99 Aligned_cols=269 Identities=20% Similarity=0.177 Sum_probs=230.3
Q ss_pred ceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecC
Q 002250 37 LVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLN 116 (947)
Q Consensus 37 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~ 116 (947)
+....+++..++..... ..+..+++|+.|+|++|.+.+..|..|..+++|++|+|++|++++.++ +..+++|++|+|+
T Consensus 11 ~l~i~~ls~~~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHH-HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHH-HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 45566777766654433 445677899999999999999999999999999999999999997665 8999999999999
Q ss_pred CCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCccccc
Q 002250 117 SSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFG 196 (947)
Q Consensus 117 ~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 196 (947)
+|++++ +...++|++|++++|.+...+ ...+++|++|++++|++++..+..+..+++|++|+|++|++++
T Consensus 89 ~n~l~~------l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 89 NNYVQE------LLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp SSEEEE------EEECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred CCcccc------ccCCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 999974 345599999999999997643 2347889999999999998888899999999999999999998
Q ss_pred ccCcccc-CCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccC
Q 002250 197 EIPAGIV-KLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGE 275 (947)
Q Consensus 197 ~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~ 275 (947)
..+..+. .+++|++|+|++|.+++.. ....+++|++|+|++|++++.+..+..+++|+.|+|++|+|+ .+|..+..
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 8777774 7899999999999999663 334589999999999999988888999999999999999999 57888999
Q ss_pred CCcCcEEEccCcccc-ccCCcCccCccccccccccc-ccccCCCCCC
Q 002250 276 FKHLTELSLYTNRLT-GTLPQKLGSWADFNYVDVSE-NLLTGPIPPD 320 (947)
Q Consensus 276 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~ 320 (947)
+++|++|++++|+++ +.+|..+..+++|+.|++++ +.+++..|..
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 999999999999998 78888999999999999994 4466655543
No 310
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.3e-28 Score=266.22 Aligned_cols=230 Identities=18% Similarity=0.220 Sum_probs=119.4
Q ss_pred CccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccccccccccc
Q 002250 231 NLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSE 310 (947)
Q Consensus 231 ~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 310 (947)
.++.|+|++|.++..+..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..++.+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 334444444444433334444445555555555555 45555555555555555555555 5555555555666666665
Q ss_pred ccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCC
Q 002250 311 NLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVT 390 (947)
Q Consensus 311 N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 390 (947)
|.+.+.+|..+... ..+..|.++++|+.|++++|.++ .+|..+..+++|+.|+|++|++++ +|
T Consensus 160 n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~ 222 (328)
T 4fcg_A 160 CPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LG 222 (328)
T ss_dssp ETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CC
T ss_pred CCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cc
Confidence 55555555443321 11233455666666666666666 555556666666666666666654 23
Q ss_pred CcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccc
Q 002250 391 DDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVS 470 (947)
Q Consensus 391 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 470 (947)
..+..+++|++|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|..++++++|+.|+|++|.+.+.+|..++.+++
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 34555555555555555555555555555555555555555555444444444444444444444444444444444444
Q ss_pred cceeeccCc
Q 002250 471 LTDINFAQN 479 (947)
Q Consensus 471 L~~L~Ls~N 479 (947)
|+.+++..|
T Consensus 303 L~~l~l~~~ 311 (328)
T 4fcg_A 303 NCIILVPPH 311 (328)
T ss_dssp TCEEECCGG
T ss_pred ceEEeCCHH
Confidence 444444433
No 311
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9.5e-28 Score=258.61 Aligned_cols=254 Identities=20% Similarity=0.204 Sum_probs=137.5
Q ss_pred EEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccccccccccccc-
Q 002250 234 NFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENL- 312 (947)
Q Consensus 234 ~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~- 312 (947)
.++.+++.++..+..+ .++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 4444555444443322 2456666666666665555566666666666666666665556666666666666666665
Q ss_pred ccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCc
Q 002250 313 LTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDD 392 (947)
Q Consensus 313 l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 392 (947)
++...| ..|..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..
T Consensus 93 l~~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 93 LRSVDP------------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp CCCCCT------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccccCH------------------------HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 443222 33444445555555555555444445555555555555555555544444
Q ss_pred ccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccc
Q 002250 393 IGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLT 472 (947)
Q Consensus 393 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 472 (947)
|..+++|++|++++|++++..+..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..+..+++|+
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 55555555555555555544444455555555555555555555555555555566666666665554445555566666
Q ss_pred eeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc
Q 002250 473 DINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT 514 (947)
Q Consensus 473 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 514 (947)
.|+|++|.+....+.. .-+..++.+..+.|.+....|..+.
T Consensus 229 ~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 229 YLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred EEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 6666666665322211 1112344444555666655555443
No 312
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.4e-27 Score=268.56 Aligned_cols=247 Identities=21% Similarity=0.238 Sum_probs=166.4
Q ss_pred cCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEecc
Q 002250 159 KLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVS 238 (947)
Q Consensus 159 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 238 (947)
....++.+++.++ .+|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456666777776 5565554 577778888888777777777777888888888888777766777777777777777
Q ss_pred CCCCCCCCc-cccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCc-cccccCCcCccCcccccccccccccccCC
Q 002250 239 QNRLEGDLS-ELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTN-RLTGTLPQKLGSWADFNYVDVSENLLTGP 316 (947)
Q Consensus 239 ~N~l~~~~~-~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (947)
+|+++..+. .+..+++|++|+|++|+|+...+..|..+++|++|+|++| .+....+..|..+++|++|+|++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 777776654 4667777777777777777666667777778888888774 4443334456677777777777776652
Q ss_pred CCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCccccc
Q 002250 317 IPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNA 396 (947)
Q Consensus 317 ~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 396 (947)
+| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+
T Consensus 200 ~~-------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 200 IP-------------------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CC-------------------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred cc-------------------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 11 14455566666666666666666666666666666666666666666666666
Q ss_pred ccccEEEccCccccccCCCCCCCCCcceEEEcccCccc
Q 002250 397 KSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFS 434 (947)
Q Consensus 397 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 434 (947)
++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 66666666666666555555566666666666666654
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=5.3e-29 Score=272.58 Aligned_cols=247 Identities=19% Similarity=0.205 Sum_probs=152.8
Q ss_pred CCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEE
Q 002250 180 NLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLH 259 (947)
Q Consensus 180 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~ 259 (947)
.+++|++|+|++|++++..|..|.++++|++|+|++|.+++..+ |..+++|++|+|++|++++.+ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence 33444444444444444333444444444444444444443322 444444444444444443221 225566666
Q ss_pred ccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCC
Q 002250 260 LFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNG 339 (947)
Q Consensus 260 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~ 339 (947)
+++|++++..+.. +++|++|++++|++++..+..++.+++|++|++++|.+++.
T Consensus 106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------- 159 (317)
T 3o53_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV----------------------- 159 (317)
T ss_dssp CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-----------------------
T ss_pred CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-----------------------
Confidence 6666665443332 45667777777777665566666666666666666666532
Q ss_pred cCCccc-cCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCC
Q 002250 340 TVPETY-ANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKIS 418 (947)
Q Consensus 340 ~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 418 (947)
.|..+ ..+++|+.|++++|.+++. +. ...+++|+.|+|++|++++.++. +..+++|++|+|++|+++ .+|..+.
T Consensus 160 -~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 160 -NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp -EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred -cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhh
Confidence 12222 3566777777777777754 22 23478888888888888865444 788888888888888888 5777888
Q ss_pred CCCcceEEEcccCccc-CCCCcccccccccchhhcccc-ccCCCCCc
Q 002250 419 EASSLVSIQLSLNQFS-GQIPLDIGKLKKLSSLYLHDN-MFSGPLPY 463 (947)
Q Consensus 419 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~ 463 (947)
.+++|+.|++++|.+. +.+|..+..+++|+.|++++| .+++..|.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 8888888888888888 677777888888888888844 45554443
No 314
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6e-27 Score=276.34 Aligned_cols=264 Identities=28% Similarity=0.378 Sum_probs=149.7
Q ss_pred cCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEecc
Q 002250 159 KLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVS 238 (947)
Q Consensus 159 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 238 (947)
+++.|++++|.++ .+|..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|+|++ +|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4677777777777 5565554 56777777777765 3443 45666666666666663 333 45566666666
Q ss_pred CCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCC
Q 002250 239 QNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIP 318 (947)
Q Consensus 239 ~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 318 (947)
+|++++.+. .+++|+.|+|++|+|++ +|.. +++|++|+|++|+++ .+|.. .
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~~---~------------------ 160 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPAL---P------------------ 160 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCC---C------------------
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCCc---c------------------
Confidence 666555443 33455555555555552 3322 244455555555444 22221 1
Q ss_pred CCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCccccccc
Q 002250 319 PDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKS 398 (947)
Q Consensus 319 ~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 398 (947)
.+|+.|++++|.+++ +| ..+++|+.|+|++|++++.. . .+++
T Consensus 161 ------------------------------~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~-~---~~~~ 202 (622)
T 3g06_A 161 ------------------------------SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLP-T---LPSE 202 (622)
T ss_dssp ------------------------------TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCC-C---CCTT
T ss_pred ------------------------------CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCC-C---ccch
Confidence 234444444444442 23 22345555555555555422 1 1245
Q ss_pred ccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccC
Q 002250 399 LALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQ 478 (947)
Q Consensus 399 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 478 (947)
|+.|++++|.++ .+|.. +++|+.|+|++|+|++ +| ..+++|+.|+|++|+|++ +|. .+++|+.|+|++
T Consensus 203 L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 203 LYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred hhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCC
Confidence 566666666665 34432 3566677777777663 44 344666777777777663 443 456677777777
Q ss_pred ceeeeecCCCCCccCcCcEEECCCCccCCccCCcc
Q 002250 479 NSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISL 513 (947)
Q Consensus 479 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 513 (947)
|+|+ .+|..+.++++|+.|+|++|++++.+|..+
T Consensus 271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 7777 667777777777777777777777666543
No 315
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1e-28 Score=269.61 Aligned_cols=179 Identities=21% Similarity=0.158 Sum_probs=116.8
Q ss_pred CceeeCCCCCCCCCCCChhhc-------ccccCcEEEccCccccccCCccC--CCCCCCCEEECcCcccccccCccccCC
Q 002250 135 LEFLSLGDNPFDPSPFPMEVL-------KLEKLYWLYLTNCSVTGQIPEGI--GNLTQLQNLELSDNELFGEIPAGIVKL 205 (947)
Q Consensus 135 L~~L~Ls~n~i~~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~l 205 (947)
|+.|+|++|.+....+|..+. ++++|++|+|++|.+++.+|..+ ..+++|++|+|++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 555555555554444455444 57778888888888887777766 7888888888888888766 7777766
Q ss_pred -----CCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCC---Cccc--cccCCCCEEEccCccCcc---cCCCC
Q 002250 206 -----NKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGD---LSEL--RFLNQLSSLHLFENQFSG---EIPEE 272 (947)
Q Consensus 206 -----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~l--~~l~~L~~L~L~~N~i~~---~~~~~ 272 (947)
++|++|+|++|++++..|..|..+++|++|+|++|++.+. +..+ ..+++|++|+|++|+|++ .....
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 7888888888888877777888888888888888876543 2222 556666666666666652 11122
Q ss_pred ccCCCcCcEEEccCccccccCC-cCccCccccccccccccccc
Q 002250 273 FGEFKHLTELSLYTNRLTGTLP-QKLGSWADFNYVDVSENLLT 314 (947)
Q Consensus 273 ~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 314 (947)
+..+++|++|+|++|++++..| ..+..+++|++|+|++|.++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 3455666666666666665443 23344455555555555554
No 316
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-26 Score=266.64 Aligned_cols=244 Identities=20% Similarity=0.219 Sum_probs=156.7
Q ss_pred EEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCC
Q 002250 162 WLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNR 241 (947)
Q Consensus 162 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 241 (947)
.++.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|+
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3444444444 3444333 456666666666655555566666666666666666665555566666666666666666
Q ss_pred CCCCCcc-ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccC-ccccccCCcCccCcccccccccccccccCCCCC
Q 002250 242 LEGDLSE-LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYT-NRLTGTLPQKLGSWADFNYVDVSENLLTGPIPP 319 (947)
Q Consensus 242 l~~~~~~-l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 319 (947)
++..+.. +..+++|++|+|++|+|+...+..|..+++|++|+|++ |.+....+..|..+++|++|+|++|.+++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 6554443 55566666666666666655556677777777777777 344433334567777777777777777632 2
Q ss_pred CcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccc
Q 002250 320 DMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSL 399 (947)
Q Consensus 320 ~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 399 (947)
.+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|
T Consensus 213 ------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 213 ------------------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp ------------------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ------------------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 13455666777777777766666667777777777777777777667777777777
Q ss_pred cEEEccCccccccCCCCCCCCCcceEEEcccCccc
Q 002250 400 ALLLLANNRFSGELPSKISEASSLVSIQLSLNQFS 434 (947)
Q Consensus 400 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 434 (947)
+.|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777777777666666777788888888888776
No 317
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.3e-27 Score=270.27 Aligned_cols=248 Identities=20% Similarity=0.243 Sum_probs=172.2
Q ss_pred CccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccccccccccc
Q 002250 231 NLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSE 310 (947)
Q Consensus 231 ~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 310 (947)
....++.+++.++.++..+. ++|+.|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34567777777777666554 5778888888888877777788888888888888888776677777777777777777
Q ss_pred ccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceecccc-CCcCCCC
Q 002250 311 NLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLST-NQFEGPV 389 (947)
Q Consensus 311 N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~ 389 (947)
|.+++. .+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++ |.+....
T Consensus 133 n~l~~~------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 133 NWLTVI------------------------PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SCCSBC------------------------CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCcc------------------------ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 777632 233456666777777777777755555667777777777776 4444444
Q ss_pred CCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCccccccc
Q 002250 390 TDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCV 469 (947)
Q Consensus 390 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 469 (947)
+..|..+++|++|+|++|++++ +| .+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|++++..|..|..++
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 189 EGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp TTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 4456666777777777777763 33 366667777777777777766666677777777777777777766666777777
Q ss_pred ccceeeccCceeeeecCCCCCccCcCcEEECCCCccC
Q 002250 470 SLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFS 506 (947)
Q Consensus 470 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 506 (947)
+|+.|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7777777777777655666666777777777777665
No 318
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.8e-27 Score=256.41 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=180.5
Q ss_pred CEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeeccc
Q 002250 256 SSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQN 335 (947)
Q Consensus 256 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n 335 (947)
+.++.+++.++ .+|..+ .++|++|+|++|++++..+..|..+++|++|++++|.+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------- 70 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-------------------- 70 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE--------------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce--------------------
Confidence 56777777776 445433 3567777777777776555667777777777777666653
Q ss_pred ccCCcCCccccCCCCccEEEccccc-ccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCC
Q 002250 336 NFNGTVPETYANCKSLIRFRVNNNS-LSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELP 414 (947)
Q Consensus 336 ~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 414 (947)
..|..|.++++|+.|++++|. ++...|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus 71 ----~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 71 ----IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp ----ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ----eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 334556677778888888886 666667777888888888888888887777777778888888888888876666
Q ss_pred CCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCc
Q 002250 415 SKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPS 494 (947)
Q Consensus 415 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 494 (947)
..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 66777788888888888877655556777777777777777777777777777777777777777777655566777777
Q ss_pred CcEEECCCCccCCccCCcccccccceeeCCCCcCCCCCCCcc
Q 002250 495 LNSLNLSNNKFSGEIPISLTYPKLSLLDLSNNQLAGPIPEPL 536 (947)
Q Consensus 495 L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~p~~~ 536 (947)
|+.|+|++|+++...+.......++.+..+.|.+.+..|+.+
T Consensus 227 L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGG
T ss_pred cCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHh
Confidence 777777777777554433223445556666677766666554
No 319
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.2e-27 Score=274.90 Aligned_cols=238 Identities=21% Similarity=0.181 Sum_probs=210.7
Q ss_pred CCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCcee
Q 002250 59 GLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFL 138 (947)
Q Consensus 59 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L 138 (947)
.+++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++.++ +..+++|++|+|++|.|++ +...++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE------LLVGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence 44589999999999999999999999999999999999998766 9999999999999999974 3345899999
Q ss_pred eCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCcccc-CCCCCcEEEeeccc
Q 002250 139 SLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIV-KLNKLWQLELYNNS 217 (947)
Q Consensus 139 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~~n~ 217 (947)
+|++|.+...+ ...+++|++|+|++|.+++..|..++++++|++|+|++|.+++..|..+. .+++|++|+|++|.
T Consensus 105 ~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999997643 23568999999999999998898999999999999999999988888886 79999999999999
Q ss_pred ccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc-ccCCcC
Q 002250 218 LSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT-GTLPQK 296 (947)
Q Consensus 218 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~ 296 (947)
|++..+ +..+++|++|+|++|++++.++.+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 997633 446899999999999999988889999999999999999995 6778999999999999999998 777888
Q ss_pred ccCccccccccccc
Q 002250 297 LGSWADFNYVDVSE 310 (947)
Q Consensus 297 l~~l~~L~~L~Ls~ 310 (947)
+..++.|+.++++.
T Consensus 258 ~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 258 FSKNQRVQTVAKQT 271 (487)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhCCCCcEEeccc
Confidence 88999999998873
No 320
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=2e-28 Score=287.28 Aligned_cols=196 Identities=17% Similarity=0.091 Sum_probs=133.5
Q ss_pred cccccCceeEEEEE-eCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhc-cccccceEEEEEec
Q 002250 636 LIGKGGSGNVYKVV-LNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAV-RHVNVVKLYCSITS 713 (947)
Q Consensus 636 ~iG~G~~g~Vy~~~-~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 713 (947)
..+.|++|.+.+++ ...|+.+|||++........ ..........++|.+|+++|+++ .|+||+++++++++
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~-------~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed 313 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGI-------LTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGEN 313 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTC-------SCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEEC
T ss_pred ccccCCcccccccccccccceeEEEEEeccccccc-------chhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEE
Confidence 45677888777766 34589999999954321111 01112223446799999999999 79999999999999
Q ss_pred CCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEecccc
Q 002250 714 EDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGL 793 (947)
Q Consensus 714 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~ 793 (947)
++..||||||++|++|.+++...+ +++.. +|+.||+.||+|+| +++||||||||+|||+++++.+||+|||+
T Consensus 314 ~~~~yLVMEyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGl 385 (569)
T 4azs_A 314 AQSGWLVMEKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGS 385 (569)
T ss_dssp SSEEEEEEECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTT
T ss_pred CCEEEEEEecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeeccc
Confidence 999999999999999999998743 35543 48899999999999 89999999999999999999999999999
Q ss_pred ceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 002250 794 AKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPI 849 (947)
Q Consensus 794 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~ 849 (947)
|+....... .....+||+.|||||++.+ .+..++|+||+|++++++.++..|+
T Consensus 386 Ar~~~~~~~--~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~ 438 (569)
T 4azs_A 386 IVTTPQDCS--WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW 438 (569)
T ss_dssp EESCC---C--CSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred CeeCCCCCc--cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence 987654332 2334679999999999865 5778899999999988887665443
No 321
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=3.8e-26 Score=243.76 Aligned_cols=215 Identities=25% Similarity=0.314 Sum_probs=125.5
Q ss_pred CCCcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCC
Q 002250 22 NSVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEV 101 (947)
Q Consensus 22 ~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 101 (947)
.++|.|.|+.|+-.+.++.+++++++++. +|. .+ .++|+.|+|++|.+.+..+..|..+++|++|+|++|++++.+
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 58999999999865667788888887764 442 22 256777788877777766667777777777777777777655
Q ss_pred CC-cccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCC
Q 002250 102 PD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGN 180 (947)
Q Consensus 102 ~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 180 (947)
+. +..+++|++|+|++|++++..+ ..|..+++|++|+|++|.++..+ +..+..+++|++|+|++|.+++..+..|..
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 54 4566666666666666653322 45555666666666666554432 223444455555555555555443334444
Q ss_pred CCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCC
Q 002250 181 LTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRL 242 (947)
Q Consensus 181 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 242 (947)
+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.+
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 55555555555555444334444444455555554444443333344444444444444444
No 322
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=9.9e-31 Score=313.20 Aligned_cols=462 Identities=15% Similarity=0.095 Sum_probs=238.1
Q ss_pred CCcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCc---C------------chhhhcCCCc
Q 002250 23 SVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGT---I------------TEGLKSCTRL 87 (947)
Q Consensus 23 ~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~---~------------~~~l~~l~~L 87 (947)
-|+.|.++.. .....+++.+.. ...+...+..+++|++|+|+++..... . +.....+++|
T Consensus 33 vck~W~~~~~---~~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIER---WCRRKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHH---HHCCEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhh---hhceEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 4668998822 123344444332 223334567788899999887653211 1 2234567888
Q ss_pred cEEeCcCccCcCCCCC-cc-cccccceeecCCC-CccCccCcccccccCCCceeeCCCCCCCCCC---CChhhcccccCc
Q 002250 88 QVLDLGNNSFSGEVPD-LS-MLHELSFLNLNSS-GISGKFPWKSLENLTNLEFLSLGDNPFDPSP---FPMEVLKLEKLY 161 (947)
Q Consensus 88 ~~L~Ls~n~i~~~~~~-l~-~l~~L~~L~L~~n-~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~---~~~~~~~l~~L~ 161 (947)
++|+|++|.+++.... +. .+++|++|+|++| .+++......+.++++|++|+|++|.++... ++.....+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 8888888887764332 43 5778888888888 4443211133447788888888888765433 122223556777
Q ss_pred EEEccCcc--ccc-cCCccCCCCCCCCEEECcCc-ccccccCccccCCCCCcEEEee-------cccccccCCccCCCCC
Q 002250 162 WLYLTNCS--VTG-QIPEGIGNLTQLQNLELSDN-ELFGEIPAGIVKLNKLWQLELY-------NNSLSGRLPVGFSNLT 230 (947)
Q Consensus 162 ~L~L~~n~--l~~-~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~-------~n~l~~~~~~~~~~l~ 230 (947)
+|++++|. ++. .++..+.++++|++|+|++| .+. .++..+..+++|++|+++ .|.+.+ ++..+.+++
T Consensus 188 ~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~ 265 (594)
T 2p1m_B 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCK 265 (594)
T ss_dssp EEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCT
T ss_pred EEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCC
Confidence 77777776 221 11112234577777777777 443 356666777777777743 333443 233566777
Q ss_pred CccEE-eccCCCCCCCCccccccCCCCEEEccCccCcccCCC-CccCCCcCcEEEccCcccccc-CCcCccCcccccccc
Q 002250 231 NLMNF-DVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPE-EFGEFKHLTELSLYTNRLTGT-LPQKLGSWADFNYVD 307 (947)
Q Consensus 231 ~L~~L-~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~ 307 (947)
+|+.| .+........+..+..+++|++|+|++|.+++.... .+..+++|++|++++| ++.. ++.....+++|+.|+
T Consensus 266 ~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred CcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 77777 343332222223334566777777777776533222 2445667777777766 3322 222222356666666
Q ss_pred cccccccCCCCCCcccCCccceeeecccccCCcCCccc-cCCCCccEEEcccccccccCCCCCC-CCCCcceeccc--c-
Q 002250 308 VSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETY-ANCKSLIRFRVNNNSLSGTIPPGIW-SLPNLSIIDLS--T- 382 (947)
Q Consensus 308 Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls--~- 382 (947)
++++.-.| ....+.++......+ ..+++|+.|.+..|.+++..+..+. .+++|+.|+++ +
T Consensus 345 L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 345 VFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp EECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred EecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 64432100 000111111111112 2355666666666666544333333 35566666665 2
Q ss_pred ---CCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCccccc-ccccchhhccccccC
Q 002250 383 ---NQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGK-LKKLSSLYLHDNMFS 458 (947)
Q Consensus 383 ---N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~ 458 (947)
|.++....+. .++..+..+++|+.|+|++ .+++..+..++. +++|+.|+|++|.++
T Consensus 410 ~~~~~l~~~~~~~-------------------~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 410 KAPDYLTLEPLDI-------------------GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp TCCCTTTCCCTHH-------------------HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred CCcccccCCchhh-------------------HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCc
Confidence 3333211100 0011123344555555544 343333333333 555666666666554
Q ss_pred CCCCccc-ccccccceeeccCceeeeecCC-CCCccCcCcEEECCCCccCCccCCcc--cccccceeeCCCCc
Q 002250 459 GPLPYSI-GSCVSLTDINFAQNSLSGKIPD-SLGSLPSLNSLNLSNNKFSGEIPISL--TYPKLSLLDLSNNQ 527 (947)
Q Consensus 459 ~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~~~L~~L~ls~N~ 527 (947)
+..+..+ ..+++|+.|+|++|.+++..+. .+..+++|+.|+|++|+++..-...+ .++.|+...+..+.
T Consensus 470 ~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 4333333 4456666666666666543332 33446677777777776643222212 23555555555443
No 323
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1e-26 Score=269.17 Aligned_cols=235 Identities=19% Similarity=0.210 Sum_probs=146.0
Q ss_pred cCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEecc
Q 002250 159 KLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVS 238 (947)
Q Consensus 159 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 238 (947)
+|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|.|++..
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---------------- 96 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL---------------- 96 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----------------
Confidence 56666666666655555555556666666666665554333 555555555555555555322
Q ss_pred CCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCC
Q 002250 239 QNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIP 318 (947)
Q Consensus 239 ~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 318 (947)
..++|+.|+|++|.|++..+. .+++|++|+|++|.+++..|..++.+++|++|+|++|.+++..
T Consensus 97 ------------~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 160 (487)
T 3oja_A 97 ------------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN- 160 (487)
T ss_dssp ------------ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-
T ss_pred ------------CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-
Confidence 124455555555555543332 2345666666666666555555666666666666666555322
Q ss_pred CCcccCCccceeeecccccCCcCCcccc-CCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccc
Q 002250 319 PDMCKTGAMTDLLVLQNNFNGTVPETYA-NCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAK 397 (947)
Q Consensus 319 ~~~~~~~~l~~L~l~~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 397 (947)
|..+. .+++|+.|+|++|.+++..+ +..+++|+.|+|++|++++.++. +..++
T Consensus 161 -----------------------~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~ 214 (487)
T 3oja_A 161 -----------------------FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAA 214 (487)
T ss_dssp -----------------------GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGT
T ss_pred -----------------------hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCC
Confidence 22332 45666777777777765422 23477888888888888865554 77788
Q ss_pred cccEEEccCccccccCCCCCCCCCcceEEEcccCccc-CCCCcccccccccchhhccc
Q 002250 398 SLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFS-GQIPLDIGKLKKLSSLYLHD 454 (947)
Q Consensus 398 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~ 454 (947)
+|+.|+|++|.|+ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.|+++.
T Consensus 215 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 8888888888887 46777888888888888888887 56677777777777777753
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.5e-30 Score=308.49 Aligned_cols=419 Identities=14% Similarity=0.155 Sum_probs=230.2
Q ss_pred eeeccCccccCcCchhhhcCCCccEEeCcCccCcCC---CC-C------------cccccccceeecCCCCccCccCccc
Q 002250 65 KINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGE---VP-D------------LSMLHELSFLNLNSSGISGKFPWKS 128 (947)
Q Consensus 65 ~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~---~~-~------------l~~l~~L~~L~L~~n~i~~~~~~~~ 128 (947)
.++++.... ......+..+++|+.|+|++|..... .+ . ...+++|++|+|++|.+++..+ ..
T Consensus 47 ~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~-~~ 124 (594)
T 2p1m_B 47 KVFIGNCYA-VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL-EL 124 (594)
T ss_dssp EEEESSTTS-SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HH
T ss_pred EEeeccccc-cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH-HH
Confidence 445544322 22335677889999999999853211 11 1 1345667777777776654433 23
Q ss_pred cc-ccCCCceeeCCCC-CCCCCCCChhhcccccCcEEEccCccccccCCccCC----CCCCCCEEECcCcc--cccc-cC
Q 002250 129 LE-NLTNLEFLSLGDN-PFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIG----NLTQLQNLELSDNE--LFGE-IP 199 (947)
Q Consensus 129 l~-~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~Ls~N~--l~~~-~~ 199 (947)
+. .+++|++|+|++| .++...++..+..+++|++|+|++|.+++..+..+. .+++|++|+|++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 33 5667777777766 333322333344566677777776666654433332 44566666666665 2111 11
Q ss_pred ccccCCCCCcEEEeecc-cccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCc
Q 002250 200 AGIVKLNKLWQLELYNN-SLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKH 278 (947)
Q Consensus 200 ~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 278 (947)
..+.++++|++|+|++| .+++ ++..+..+++|++|+++.+... +..|.+.+ ++..+.++++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~----------------~~~~~~~~-l~~~l~~~~~ 266 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAE----------------VRPDVYSG-LSVALSGCKE 266 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCC----------------CCHHHHHH-HHHHHHTCTT
T ss_pred HHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCc----------------cchhhHHH-HHHHHhcCCC
Confidence 11233466666666666 3332 4555555666666664433210 22222332 2224445555
Q ss_pred CcEE-EccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcc
Q 002250 279 LTEL-SLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVN 357 (947)
Q Consensus 279 L~~L-~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~ 357 (947)
|+.| .+.+... +.++..+..+++|++|++++|.+++.. ++..+..+++|+.|+++
T Consensus 267 L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~-----------------------l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 267 LRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYD-----------------------LVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp CCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHH-----------------------HHHHHTTCTTCCEEEEE
T ss_pred cccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHH-----------------------HHHHHhcCCCcCEEeCc
Confidence 5555 2322222 133333344555555555555543110 01112233444444444
Q ss_pred ccccccc-CCCCCCCCCCcceecc---------ccCCcCCCCCCcc-cccccccEEEccCccccccCCCCCC-CCCcceE
Q 002250 358 NNSLSGT-IPPGIWSLPNLSIIDL---------STNQFEGPVTDDI-GNAKSLALLLLANNRFSGELPSKIS-EASSLVS 425 (947)
Q Consensus 358 ~n~l~~~-~p~~~~~l~~L~~L~L---------s~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~ 425 (947)
+| +... ++.....+++|+.|++ +.+.+++.....+ ..+++|+.|.++.|++++..+..+. .+++|+.
T Consensus 323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 44 2211 1111112344444444 2233332111122 2356777777777777655444443 4678888
Q ss_pred EEcc--c----CcccCC-----CCcccccccccchhhccccccCCCCCccccc-ccccceeeccCceeeeecCCCC-Ccc
Q 002250 426 IQLS--L----NQFSGQ-----IPLDIGKLKKLSSLYLHDNMFSGPLPYSIGS-CVSLTDINFAQNSLSGKIPDSL-GSL 492 (947)
Q Consensus 426 L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l 492 (947)
|+|+ + |.+++. ++..+..+++|+.|+|++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 8888 4 555521 122266789999999987 666655556665 8999999999999987655555 668
Q ss_pred CcCcEEECCCCccCCccCCc-c-cccccceeeCCCCcCC
Q 002250 493 PSLNSLNLSNNKFSGEIPIS-L-TYPKLSLLDLSNNQLA 529 (947)
Q Consensus 493 ~~L~~L~Ls~N~l~~~~p~~-~-~~~~L~~L~ls~N~l~ 529 (947)
++|+.|+|++|++++..+.. . .+++|+.|++++|+++
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 99999999999997544432 2 3689999999999984
No 325
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.5e-25 Score=233.93 Aligned_cols=226 Identities=24% Similarity=0.270 Sum_probs=133.4
Q ss_pred cccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeC
Q 002250 61 QALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSL 140 (947)
Q Consensus 61 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~L 140 (947)
..+..+++..+.+.+.. .+..+++|+.|++++|.++. .+.+ ..+++|++|+|
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~~l-------------------------~~l~~L~~L~l 70 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGI-------------------------QYLPNVRYLAL 70 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CTTG-------------------------GGCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cccc-------------------------ccCCCCcEEEC
Confidence 34445555555553332 24455566666666665552 2234 44444444444
Q ss_pred CCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccc
Q 002250 141 GDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSG 220 (947)
Q Consensus 141 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 220 (947)
++|.+... ..+..+++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++
T Consensus 71 ~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 71 GGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp TTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc
Confidence 44444331 134455555555555555555555556666666666666666665555556666666666666666665
Q ss_pred cCCccCCCCCCccEEeccCCCCCCCCcc-ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccC
Q 002250 221 RLPVGFSNLTNLMNFDVSQNRLEGDLSE-LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGS 299 (947)
Q Consensus 221 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 299 (947)
..+..|..+++|++|++++|++++.+.. +..+++|+.|+|++|++++..+..|..+++|++|+|++|++.+.
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------- 220 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------- 220 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------
Confidence 5555566666666666666666655443 45666677777777777666666667777777777777766532
Q ss_pred cccccccccccccccCCCCCCcccC
Q 002250 300 WADFNYVDVSENLLTGPIPPDMCKT 324 (947)
Q Consensus 300 l~~L~~L~Ls~N~l~~~~p~~~~~~ 324 (947)
+++|+.|+++.|.++|.+|..++.+
T Consensus 221 ~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CcHHHHHHHHHHhCCCcccCccccc
Confidence 4456777777777776666655544
No 326
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=2e-25 Score=260.39 Aligned_cols=193 Identities=22% Similarity=0.241 Sum_probs=146.7
Q ss_pred CCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccccceEEEEE
Q 002250 632 KPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNVVKLYCSI 711 (947)
Q Consensus 632 ~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 711 (947)
...+.||+|+||+||+|... ++.+|+|+....... . .........+.+.+|++++++++||||+++..++
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~------~---~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~ 408 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYR------D---ERLDENIRKSRTAREARYLALVKDFGIPAPYIFD 408 (540)
T ss_dssp ---------CCEEEEEEECS-SCEEEEEEECCCTTS------C---HHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEE
T ss_pred CCCCEEeeCCCEEEEEEEEC-CCeEEEEEEeccccc------c---hhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEE
Confidence 44678999999999999554 789999987431110 0 0001112245689999999999999999666666
Q ss_pred ecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEecc
Q 002250 712 TSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADF 791 (947)
Q Consensus 712 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~Df 791 (947)
..++..|+||||+++++|.+++.. +..++.|+++||+||| +++|+||||||+|||++. .+||+||
T Consensus 409 ~~~~~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DF 473 (540)
T 3en9_A 409 VDLDNKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDF 473 (540)
T ss_dssp EETTTTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCC
T ss_pred EeCCccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEEC
Confidence 677788999999999999999986 4578999999999999 899999999999999999 9999999
Q ss_pred ccceecccCCCCc-----ceecccccccccCcccccc--CCCCCccchHHHHHHHHHHHhCCCCC
Q 002250 792 GLAKIVQTGEAGD-----LTHVIAGTHGYIAPEYAYT--CKINEKSDVYSFGVVLMELVTGKRPI 849 (947)
Q Consensus 792 G~a~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~slGv~l~elltg~~p~ 849 (947)
|+|+......... ......||+.|||||++.. ..|+..+|+|+..+-..+.+.++.+|
T Consensus 474 Gla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY 538 (540)
T 3en9_A 474 GLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY 538 (540)
T ss_dssp TTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred ccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 9998765432111 1235679999999999976 55778899999999999988887775
No 327
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.3e-24 Score=230.94 Aligned_cols=224 Identities=16% Similarity=0.169 Sum_probs=119.5
Q ss_pred EEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeeccccc
Q 002250 258 LHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNF 337 (947)
Q Consensus 258 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~ 337 (947)
.+..+..+. .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------- 66 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---------------------- 66 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE----------------------
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc----------------------
Confidence 344444444 3444332 346666666666654444455555555555555555442
Q ss_pred CCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCC
Q 002250 338 NGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKI 417 (947)
Q Consensus 338 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 417 (947)
..+..|.++++|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+
T Consensus 67 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------ 120 (276)
T 2z62_A 67 --IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI------------------------ 120 (276)
T ss_dssp --ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC------------------------
T ss_pred --cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc------------------------
Confidence 122334444555555555555554444445555555555555555544444344
Q ss_pred CCCCcceEEEcccCcccCC-CCcccccccccchhhccccccCCCCCcccccccccc----eeeccCceeeeecCCCCCcc
Q 002250 418 SEASSLVSIQLSLNQFSGQ-IPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLT----DINFAQNSLSGKIPDSLGSL 492 (947)
Q Consensus 418 ~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l 492 (947)
..+++|+.|++++|++++. +|..++++++|+.|+|++|++++..+..|..+.+|+ .|++++|++++..+..+. .
T Consensus 121 ~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~ 199 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-E 199 (276)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-S
T ss_pred ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-C
Confidence 4444444555555544432 344555555555555555555544444555444444 567777777654444443 3
Q ss_pred CcCcEEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCC
Q 002250 493 PSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIP 533 (947)
Q Consensus 493 ~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p 533 (947)
.+|+.|+|++|++++.++..+. +++|+.|+|++|++++..|
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 4677777777777766555443 5677777777777776655
No 328
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.2e-24 Score=229.84 Aligned_cols=207 Identities=22% Similarity=0.224 Sum_probs=184.4
Q ss_pred CCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEc
Q 002250 349 KSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQL 428 (947)
Q Consensus 349 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 428 (947)
++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888999999998777778889999999999999999888888999999999999999999888889999999999999
Q ss_pred ccCcccCCCCcccccccccchhhccccccCCC-CCcccccccccceeeccCceeeeecCCCCCccCcCc----EEECCCC
Q 002250 429 SLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGP-LPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLN----SLNLSNN 503 (947)
Q Consensus 429 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N 503 (947)
++|++++..+..++.+++|++|+|++|.+++. +|..|+.+++|++|+|++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999987777899999999999999999875 699999999999999999999988888888888888 9999999
Q ss_pred ccCCccCCcccccccceeeCCCCcCCCCCCCccc--ccccccccccCCCCCCCC
Q 002250 504 KFSGEIPISLTYPKLSLLDLSNNQLAGPIPEPLN--IKAFIDSFTGNPGLCSKT 555 (947)
Q Consensus 504 ~l~~~~p~~~~~~~L~~L~ls~N~l~~~~p~~~~--~~~~~~~~~gN~~~c~~~ 555 (947)
++++..+..+...+|+.|+|++|++++.++..+. .......+.+||+.|+|+
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9998888877778999999999999987776543 233455789999999986
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.3e-24 Score=230.07 Aligned_cols=203 Identities=21% Similarity=0.266 Sum_probs=171.5
Q ss_pred cccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCC
Q 002250 106 MLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQ 185 (947)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 185 (947)
.+.++..+++..+.+.+.. .+..+++|+.|++++|.+...+ .+..+++|++|++++|.+++. ..+..+++|+
T Consensus 17 ~~~~l~~l~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 88 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHDI--SALKELTNLT 88 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCC
T ss_pred hHHHHHHHHhcCccccccc---ccccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCCc--hhhcCCCCCC
Confidence 3456667777777776543 4778899999999999887532 478899999999999999863 4788999999
Q ss_pred EEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCcc-ccccCCCCEEEccCcc
Q 002250 186 NLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSE-LRFLNQLSSLHLFENQ 264 (947)
Q Consensus 186 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-l~~l~~L~~L~L~~N~ 264 (947)
+|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++.+.. +..+++|+.|+|++|+
T Consensus 89 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 999999999887777889999999999999999988777889999999999999999887654 6788999999999999
Q ss_pred CcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCC
Q 002250 265 FSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGP 316 (947)
Q Consensus 265 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (947)
+++..+..|..+++|++|++++|++++..|..++.+++|++|++++|++.+.
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 9977777788899999999999999987777788899999999999988743
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.4e-23 Score=223.92 Aligned_cols=202 Identities=22% Similarity=0.166 Sum_probs=114.0
Q ss_pred cccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCC-cccccccceeecCCCCccCccCcccccccCC
Q 002250 56 SICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTN 134 (947)
Q Consensus 56 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~ 134 (947)
.+.++++++.+++++|+++. +|..+. ++|+.|+|++|.|++..+. +..+++|++|+|++|.|++..+ ..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~---- 74 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DG---- 74 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CS----
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CC----
Confidence 34555556666666655533 232222 4555555555555544332 4445555555555555443211 13
Q ss_pred CceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEee
Q 002250 135 LEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELY 214 (947)
Q Consensus 135 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 214 (947)
.+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 75 ---------------------~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 75 ---------------------TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp ---------------------CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred ---------------------CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence 4444555555555554 345555556666666666666655555556666666666666
Q ss_pred cccccccCCccCCCCCCccEEeccCCCCCCCCcc-ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc
Q 002250 215 NNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSE-LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 215 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 290 (947)
+|+|++..+..|..+++|+.|+|++|+++..+.. +..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++.
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6666655555566666666666666666655543 455666666666667666 55666666667777777777765
No 331
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.8e-23 Score=220.46 Aligned_cols=163 Identities=21% Similarity=0.223 Sum_probs=78.8
Q ss_pred cccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcc
Q 002250 344 TYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSL 423 (947)
Q Consensus 344 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 423 (947)
.|.++++|++|++++|.++...+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---- 131 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---- 131 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT----
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc----
Confidence 3444455555555555554333333444555555555555555444444444444455555444444444444444
Q ss_pred eEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCC
Q 002250 424 VSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNN 503 (947)
Q Consensus 424 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 503 (947)
+++|++|+|++|.+++..+..|+.+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 132 --------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 132 --------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 444444444444444444444444555555555555555444444455555555555555
Q ss_pred ccCCccCCccc-ccccceeeCCCCcCCC
Q 002250 504 KFSGEIPISLT-YPKLSLLDLSNNQLAG 530 (947)
Q Consensus 504 ~l~~~~p~~~~-~~~L~~L~ls~N~l~~ 530 (947)
++++.++..+. +++|+.|+|++|++.+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 55544443332 3455555555555543
No 332
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.8e-23 Score=222.38 Aligned_cols=203 Identities=20% Similarity=0.177 Sum_probs=162.0
Q ss_pred hhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccC
Q 002250 81 LKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKL 160 (947)
Q Consensus 81 l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L 160 (947)
+..+++|+++++++|.++..++.+. ++|+.|+|++|.+++..+ ..|. .+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~-~~~~-------------------------~l~~L 57 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSL-ATLM-------------------------PYTRL 57 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEG-GGGT-------------------------TCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCH-HHhh-------------------------cCCCC
Confidence 4556677777777777765554432 455566666665553322 3444 44555
Q ss_pred cEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCC
Q 002250 161 YWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQN 240 (947)
Q Consensus 161 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 240 (947)
++|+|++|.+++..+ .+.+++|++|+|++|+|+ .+|..+.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 58 ~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 58 TQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 555555555553322 278899999999999997 78889999999999999999999888889999999999999999
Q ss_pred CCCCCCcc-ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccC
Q 002250 241 RLEGDLSE-LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTG 315 (947)
Q Consensus 241 ~l~~~~~~-l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (947)
++++.+.. +..+++|+.|+|++|+|+...+..|..+++|++|+|++|+++ .+|..+..+.+|+.|+|++|++.+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99987764 678999999999999999777777899999999999999999 889999999999999999999975
No 333
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=228.46 Aligned_cols=200 Identities=21% Similarity=0.215 Sum_probs=116.3
Q ss_pred ccceeecCCCCccCccCcccc--cccCCCceeeCCCCCCCCCCC---ChhhcccccCcEEEccCccccccCCccCCCCCC
Q 002250 109 ELSFLNLNSSGISGKFPWKSL--ENLTNLEFLSLGDNPFDPSPF---PMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQ 183 (947)
Q Consensus 109 ~L~~L~L~~n~i~~~~~~~~l--~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 183 (947)
+|++|+|++|.+.+..| ..+ ..+++|++|+|++|.+..... ...+..+++|++|+|++|.+++..|..|+.+++
T Consensus 92 ~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 34444444444444333 222 445555555555555443111 012234566666666666666666666666677
Q ss_pred CCEEECcCcccccc--c--CccccCCCCCcEEEeecccccccCCc----cCCCCCCccEEeccCCCCCCC-Ccccccc--
Q 002250 184 LQNLELSDNELFGE--I--PAGIVKLNKLWQLELYNNSLSGRLPV----GFSNLTNLMNFDVSQNRLEGD-LSELRFL-- 252 (947)
Q Consensus 184 L~~L~Ls~N~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~-~~~l~~l-- 252 (947)
|++|+|++|++.+. + +..+..+++|++|+|++|+++. ++. .+..+++|++|+|++|++++. +..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 77777777765431 1 1223556667777777777652 222 245666777777777777665 3334333
Q ss_pred -CCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccC
Q 002250 253 -NQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTG 315 (947)
Q Consensus 253 -~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (947)
++|++|+|++|+|+ .+|..+. ++|++|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 57777777777777 5566554 6777777777777743 33 5667777777777777763
No 334
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.3e-25 Score=244.93 Aligned_cols=269 Identities=20% Similarity=0.243 Sum_probs=134.2
Q ss_pred CCCCcccceeeeCCCCceeEeccCCCccccccCcccccCC--cccceeeccCccccCcCchhhhcCCCccEEeCcCccCc
Q 002250 21 ANSVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGL--QALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFS 98 (947)
Q Consensus 21 ~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~ 98 (947)
+..|..|.++.|+. ..++.++++++.+.. ..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.++
T Consensus 33 ~~vc~~W~~~~~~~-~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~ 106 (336)
T 2ast_B 33 SGVCKRWYRLASDE-SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE 106 (336)
T ss_dssp TSSCHHHHHHHTCS-TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred HHHHHHHHHHhcCc-hhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence 34677899999874 345566665544331 223333 4455555555555444333 234455555555555444
Q ss_pred CCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCc-ccccc-CCc
Q 002250 99 GEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNC-SVTGQ-IPE 176 (947)
Q Consensus 99 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~ 176 (947)
+. .++ ..+..+++|++|+|++|.+... .+..+..+++|++|++++| .+++. ++.
T Consensus 107 ~~----------------------~~~-~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 107 VS----------------------TLH-GILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp HH----------------------HHH-HHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred HH----------------------HHH-HHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 32 022 2344444555555555444321 2333444455555555555 34431 333
Q ss_pred cCCCCCCCCEEECcCc-ccccc-cCccccCCC-CCcEEEeecc--ccc-ccCCccCCCCCCccEEeccCCC-CCC-CCcc
Q 002250 177 GIGNLTQLQNLELSDN-ELFGE-IPAGIVKLN-KLWQLELYNN--SLS-GRLPVGFSNLTNLMNFDVSQNR-LEG-DLSE 248 (947)
Q Consensus 177 ~~~~l~~L~~L~Ls~N-~l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~ 248 (947)
.+.++++|++|+|++| .+++. ++..+..++ +|++|+|++| .++ +.++..+..+++|++|++++|. +++ .+..
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 4445555555555555 55432 344445555 5555555555 233 2334444555555555555555 332 2334
Q ss_pred ccccCCCCEEEccCcc-CcccCCCCccCCCcCcEEEccCccccccCCcCccCc-ccccccccccccccCCCCCCccc
Q 002250 249 LRFLNQLSSLHLFENQ-FSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSW-ADFNYVDVSENLLTGPIPPDMCK 323 (947)
Q Consensus 249 l~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~ 323 (947)
+..+++|++|+|++|. +.......+..+++|++|++++| ++ ...+..+ ..+..|++++|.+++..|+.+..
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 5555666666666663 22222224566667777777766 32 1223333 23666667777777766665543
No 335
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=8.5e-23 Score=215.22 Aligned_cols=192 Identities=23% Similarity=0.284 Sum_probs=107.1
Q ss_pred CCcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC
Q 002250 23 SVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP 102 (947)
Q Consensus 23 ~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 102 (947)
+||.|.|++|... .+.+++++.++.. +|. .+. ++++.|+|++|.+.+..+..|..+++|++|+|++|+|++.++
T Consensus 3 ~Cp~~~gC~C~~~--~~~l~~~~~~l~~-~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNEG--KKEVDCQGKSLDS-VPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEGG--GTEEECTTCCCSS-CCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCCC--CeEEecCCCCccc-cCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 6999999999632 2345666665543 331 121 456666666666666666566666666666666666655443
Q ss_pred CcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCC
Q 002250 103 DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLT 182 (947)
Q Consensus 103 ~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 182 (947)
. .|..+++|++|+|++|.++..+ +..+..+++|++|+|++|++++..+..|..++
T Consensus 77 ~------------------------~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 77 G------------------------VFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp T------------------------TTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred h------------------------HhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCcCCCcChhHhccCC
Confidence 3 3344444444444444443221 22233444444555555555544444556666
Q ss_pred CCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCC
Q 002250 183 QLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGD 245 (947)
Q Consensus 183 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 245 (947)
+|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+...
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666666666666655555566666666666666666655555566666666666666665543
No 336
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.5e-23 Score=214.46 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=129.5
Q ss_pred ccceeeccCccccCcCchhhhcCCCccEEeCcCcc-CcCCCC-CcccccccceeecCC-CCccCccCcccccccCCCcee
Q 002250 62 ALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNS-FSGEVP-DLSMLHELSFLNLNS-SGISGKFPWKSLENLTNLEFL 138 (947)
Q Consensus 62 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~-~l~~l~~L~~L~L~~-n~i~~~~~~~~l~~l~~L~~L 138 (947)
+|+.|+|++|+|.+..+..|..+++|++|+|++|+ +++.++ .+..+++|++|+|++ |++++ ++...|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHhCCCCCCCEE
Confidence 78899999999988888888889999999999996 776665 477788888888887 77774 333567777777777
Q ss_pred eCCCCCCCCCCCChhhcccccCc---EEEccCc-cccccCCccCCCCCCCC-EEECcCcccccccCccccCCCCCcEEEe
Q 002250 139 SLGDNPFDPSPFPMEVLKLEKLY---WLYLTNC-SVTGQIPEGIGNLTQLQ-NLELSDNELFGEIPAGIVKLNKLWQLEL 213 (947)
Q Consensus 139 ~Ls~n~i~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 213 (947)
++++|.++. +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|+|++|+++...+..+.. ++|++|+|
T Consensus 111 ~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 777777765 333 55556665 6777777 66655555666666666 6777666665322223333 56666666
Q ss_pred eccc-ccccCCccCCCC-CCccEEeccCCCCCCCCccccccCCCCEEEccCc
Q 002250 214 YNNS-LSGRLPVGFSNL-TNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFEN 263 (947)
Q Consensus 214 ~~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N 263 (947)
++|+ +++..+..|..+ ++|++|++++|++++.+.. .+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 6663 665555556666 6666666666665544333 3444555554443
No 337
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.6e-24 Score=241.72 Aligned_cols=249 Identities=18% Similarity=0.136 Sum_probs=154.1
Q ss_pred eeccCccccCcCchhhhcCCCccEEeCcCccCcCCCC-----Cccccc-ccceeecCCCCccCccCccccccc-----CC
Q 002250 66 INLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVP-----DLSMLH-ELSFLNLNSSGISGKFPWKSLENL-----TN 134 (947)
Q Consensus 66 L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-----~l~~l~-~L~~L~L~~n~i~~~~~~~~l~~l-----~~ 134 (947)
+.|+.|.+++.+|..+...++|++|||++|.|++..+ .+..++ +|++|+|++|.+++..+ ..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCC
Confidence 4556666666666666655666666666666665543 245555 66666666666654333 344443 66
Q ss_pred CceeeCCCCCCCCCCCChh----hccc-ccCcEEEccCccccccCCccC----CC-CCCCCEEECcCcccccccC----c
Q 002250 135 LEFLSLGDNPFDPSPFPME----VLKL-EKLYWLYLTNCSVTGQIPEGI----GN-LTQLQNLELSDNELFGEIP----A 200 (947)
Q Consensus 135 L~~L~Ls~n~i~~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~Ls~N~l~~~~~----~ 200 (947)
|++|+|++|.++... +.. +..+ ++|++|+|++|.+++..+..+ .. .++|++|+|++|++++..+ .
T Consensus 82 L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 777777777665432 222 2233 677777777777765554443 23 2577777777777764333 3
Q ss_pred cccCCC-CCcEEEeecccccccCCccC----CCC-CCccEEeccCCCCCC-----CCccccc-cCCCCEEEccCccCccc
Q 002250 201 GIVKLN-KLWQLELYNNSLSGRLPVGF----SNL-TNLMNFDVSQNRLEG-----DLSELRF-LNQLSSLHLFENQFSGE 268 (947)
Q Consensus 201 ~l~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~-----~~~~l~~-l~~L~~L~L~~N~i~~~ 268 (947)
.+..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|.++. .+..+.. .++|++|+|++|.|++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334444 77777777777776555433 334 477888888887765 2333444 34788888888887754
Q ss_pred CC----CCccCCCcCcEEEccCccccc-------cCCcCccCcccccccccccccccCC
Q 002250 269 IP----EEFGEFKHLTELSLYTNRLTG-------TLPQKLGSWADFNYVDVSENLLTGP 316 (947)
Q Consensus 269 ~~----~~~~~l~~L~~L~L~~N~l~~-------~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (947)
.+ ..+..+++|++|+|++|.+.+ .++..+..+++|+.||+++|++.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 43 334567788888888887432 2344667778888888888887644
No 338
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=9e-23 Score=221.76 Aligned_cols=210 Identities=25% Similarity=0.308 Sum_probs=132.4
Q ss_pred cceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCC
Q 002250 63 LQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGD 142 (947)
Q Consensus 63 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~ 142 (947)
+..+.+..+.+.+... +..+++|++|++++|.++.. +.+..+++|++|+|++|.+.+..+ +..+++|++|+|++
T Consensus 21 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccC
Confidence 3344455555544322 34566777777777777643 356667777777777777664322 66677777777777
Q ss_pred CCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccC
Q 002250 143 NPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRL 222 (947)
Q Consensus 143 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 222 (947)
|.++.. + .+..+++|++|++++|.+++. + .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++..
T Consensus 95 n~l~~~--~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 95 NPLKNV--S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp CCCSCC--G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CcCCCc--h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh
Confidence 776552 2 466666777777777776643 3 26677777777777777764432 666777777777777776433
Q ss_pred CccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc
Q 002250 223 PVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 223 ~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 290 (947)
+ +..+++|++|+|++|++++.+. +..+++|++|+|++|++++.. .+..+++|++|+|++|+++
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred h--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 2 6667777777777777665443 566666666777766666433 2666666666666666665
No 339
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.9e-25 Score=245.21 Aligned_cols=257 Identities=19% Similarity=0.172 Sum_probs=118.1
Q ss_pred EccCccccccCCccCCCCCCCCEEECcCcccccccC----ccccCCC-CCcEEEeecccccccCCccCCCC-----CCcc
Q 002250 164 YLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIP----AGIVKLN-KLWQLELYNNSLSGRLPVGFSNL-----TNLM 233 (947)
Q Consensus 164 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~ 233 (947)
++++|.+++.+|..+...++|++|+|++|.+++..+ ..+.+++ +|++|+|++|.+++..+..|..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 334444444444433333344444444444443333 3344444 44444444444444333333332 4444
Q ss_pred EEeccCCCCCCCCcc-----cccc-CCCCEEEccCccCcccCCCCcc----C-CCcCcEEEccCccccccC----CcCcc
Q 002250 234 NFDVSQNRLEGDLSE-----LRFL-NQLSSLHLFENQFSGEIPEEFG----E-FKHLTELSLYTNRLTGTL----PQKLG 298 (947)
Q Consensus 234 ~L~Ls~N~l~~~~~~-----l~~l-~~L~~L~L~~N~i~~~~~~~~~----~-l~~L~~L~L~~N~l~~~~----p~~l~ 298 (947)
+|+|++|++++.... +..+ ++|++|+|++|++++..+..+. . .++|++|+|++|++++.. +..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 444444444432221 2222 4455555555555433332222 1 134555555555554322 22222
Q ss_pred Ccc-cccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCC-CCccEEEccccccccc----CCCCCCC-
Q 002250 299 SWA-DFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANC-KSLIRFRVNNNSLSGT----IPPGIWS- 371 (947)
Q Consensus 299 ~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~----~p~~~~~- 371 (947)
.++ +|++|+|++|.+++..+..++ ..+..+ ++|+.|+|++|.+++. ++..+..
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~--------------------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELA--------------------KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHH--------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred cCCccccEeeecCCCCchhhHHHHH--------------------HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 332 455555555555432221111 122223 3555555555555532 2223333
Q ss_pred CCCcceeccccCCcCCCCC----CcccccccccEEEccCccccc-------cCCCCCCCCCcceEEEcccCcccCCCCcc
Q 002250 372 LPNLSIIDLSTNQFEGPVT----DDIGNAKSLALLLLANNRFSG-------ELPSKISEASSLVSIQLSLNQFSGQIPLD 440 (947)
Q Consensus 372 l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 440 (947)
.++|+.|+|++|++++..+ ..+..+++|+.|+|++|.+.+ .++..+..+++|+.||+++|++.+..+..
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 2366666666666665433 223445566666666666332 24456677778888888888877554433
No 340
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.4e-22 Score=213.52 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=98.0
Q ss_pred CccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcc
Q 002250 350 SLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLS 429 (947)
Q Consensus 350 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 429 (947)
.++.|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 55666666666665555556666666666666666666555556666666666666666665555555666666666666
Q ss_pred cCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCc
Q 002250 430 LNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGE 508 (947)
Q Consensus 430 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 508 (947)
+|+|++..+..|..+++|+.|+|++|++++..+..|+.+++|++|+|++|+|++..|..|..+++|+.|+|++|++++.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666654444456666666666666666655555566666666666666666655555566666666666666666554
No 341
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.6e-22 Score=211.60 Aligned_cols=196 Identities=15% Similarity=0.201 Sum_probs=142.3
Q ss_pred ccceeeecccccCCcCCccccCCCCccEEEccccc-ccccCCCCCCCCCCcceecccc-CCcCCCCCCcccccccccEEE
Q 002250 326 AMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNS-LSGTIPPGIWSLPNLSIIDLST-NQFEGPVTDDIGNAKSLALLL 403 (947)
Q Consensus 326 ~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 403 (947)
.++.|++.+|++.+..+..|.++++|+.|++++|. +++..+..|..+++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44445555555554555567777788888888886 7755566777788888888887 788777777777888888888
Q ss_pred ccCccccccCCCCCCCCCcce---EEEcccC-cccCCCCcccccccccc-hhhccccccCCCCCcccccccccceeeccC
Q 002250 404 LANNRFSGELPSKISEASSLV---SIQLSLN-QFSGQIPLDIGKLKKLS-SLYLHDNMFSGPLPYSIGSCVSLTDINFAQ 478 (947)
Q Consensus 404 L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 478 (947)
+++|++++ +|. +..+++|+ .|++++| ++++..+..|.++++|+ .|+|++|+++...+..|.. ++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88888874 565 77777776 8888888 78766666678888888 8888888887444444444 7888888888
Q ss_pred ce-eeeecCCCCCcc-CcCcEEECCCCccCCccCCcccccccceeeCCCC
Q 002250 479 NS-LSGKIPDSLGSL-PSLNSLNLSNNKFSGEIPISLTYPKLSLLDLSNN 526 (947)
Q Consensus 479 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N 526 (947)
|+ +++..+..|.++ ++|+.|+|++|++++.++. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 84 886667778888 8888888888888855443 5567888887765
No 342
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.5e-23 Score=231.66 Aligned_cols=254 Identities=17% Similarity=0.159 Sum_probs=204.6
Q ss_pred CccEEeCcCccCcCCCCCcccc--cccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEE
Q 002250 86 RLQVLDLGNNSFSGEVPDLSML--HELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWL 163 (947)
Q Consensus 86 ~L~~L~Ls~n~i~~~~~~l~~l--~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L 163 (947)
.++.|||++|.+. ...+..+ ++++.|++++|.+.+..+ .+..+++|++|+|++|.+....++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4677777777765 2224455 677778888887776554 356789999999999988654467778899999999
Q ss_pred EccCccccccCCccCCCCCCCCEEECcCc-ccccc-cCccccCCCCCcEEEeecc-ccccc-CCccCCCCC-CccEEecc
Q 002250 164 YLTNCSVTGQIPEGIGNLTQLQNLELSDN-ELFGE-IPAGIVKLNKLWQLELYNN-SLSGR-LPVGFSNLT-NLMNFDVS 238 (947)
Q Consensus 164 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls 238 (947)
+|++|.+++..+..++.+++|++|+|++| .+++. ++..+.++++|++|+|++| .+++. ++..+..++ +|++|+|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999999888999999999999999999 67753 6677889999999999999 99864 567788899 99999999
Q ss_pred CCC--CC--CCCccccccCCCCEEEccCcc-CcccCCCCccCCCcCcEEEccCcc-ccccCCcCccCccccccccccccc
Q 002250 239 QNR--LE--GDLSELRFLNQLSSLHLFENQ-FSGEIPEEFGEFKHLTELSLYTNR-LTGTLPQKLGSWADFNYVDVSENL 312 (947)
Q Consensus 239 ~N~--l~--~~~~~l~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~ 312 (947)
+|. ++ +.+..+..+++|++|+|++|. +++..+..+..+++|++|++++|. +.......++.+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 995 43 234456789999999999999 777788899999999999999995 43333346888999999999999
Q ss_pred ccCCCCCCcccC-CccceeeecccccCCcCCccccC
Q 002250 313 LTGPIPPDMCKT-GAMTDLLVLQNNFNGTVPETYAN 347 (947)
Q Consensus 313 l~~~~p~~~~~~-~~l~~L~l~~n~~~~~~p~~~~~ 347 (947)
++. ..+..+ ..+..|.+..|++.+..|..+++
T Consensus 283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 332 233444 34788889999999999988775
No 343
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2e-24 Score=243.32 Aligned_cols=187 Identities=22% Similarity=0.258 Sum_probs=93.9
Q ss_pred cccCCCceeeCCCCCCCCCC---CChhhcccccCcEEEccCccccccCCccCC----CC---------CCCCEEECcCcc
Q 002250 130 ENLTNLEFLSLGDNPFDPSP---FPMEVLKLEKLYWLYLTNCSVTGQIPEGIG----NL---------TQLQNLELSDNE 193 (947)
Q Consensus 130 ~~l~~L~~L~Ls~n~i~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~Ls~N~ 193 (947)
..+++|++|+|++|.+.... ++..+..+++|++|+|++|.+++..+..+. .+ ++|++|+|++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 34455555555555444321 233344445555555555555432222222 22 555555555555
Q ss_pred cc-cccC---ccccCCCCCcEEEeecccccc-----cCCccCCCCCCccEEeccCCCCC-----CCCccccccCCCCEEE
Q 002250 194 LF-GEIP---AGIVKLNKLWQLELYNNSLSG-----RLPVGFSNLTNLMNFDVSQNRLE-----GDLSELRFLNQLSSLH 259 (947)
Q Consensus 194 l~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~l~~l~~L~~L~ 259 (947)
++ +.++ ..+..+++|++|+|++|.|+. ..+..+..+++|++|+|++|.++ ..+..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 54 2222 244455555666666655552 22334555556666666666552 1233455555666666
Q ss_pred ccCccCccc----CCCCc--cCCCcCcEEEccCccccc----cCCcCc-cCcccccccccccccccCC
Q 002250 260 LFENQFSGE----IPEEF--GEFKHLTELSLYTNRLTG----TLPQKL-GSWADFNYVDVSENLLTGP 316 (947)
Q Consensus 260 L~~N~i~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~Ls~N~l~~~ 316 (947)
|++|.|++. ++..+ +.+++|++|+|++|++++ .+|..+ .++++|++|++++|++++.
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 666666543 33344 225666666666666664 355555 4456666666666666543
No 344
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.3e-22 Score=216.38 Aligned_cols=206 Identities=20% Similarity=0.299 Sum_probs=177.9
Q ss_pred cCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccC
Q 002250 43 LPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISG 122 (947)
Q Consensus 43 l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~ 122 (947)
+....+.+.+ .+.++++|+.|++++|.+... + .+..+++|++|+|++|.+++.++ +..+++|++|+|++|++++
T Consensus 26 l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 26 AGKSNVTDTV---TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp TTCSSTTSEE---CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred hCCCCcCcee---cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 3444444433 356789999999999999654 4 68999999999999999998776 9999999999999999986
Q ss_pred ccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccc
Q 002250 123 KFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGI 202 (947)
Q Consensus 123 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l 202 (947)
. ..+..+++|++|+|++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|+|++|++++..+ +
T Consensus 100 ~---~~~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 100 V---SAIAGLQSIKTLDLTSTQITDV--T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L 169 (308)
T ss_dssp C---GGGTTCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred c---hhhcCCCCCCEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h
Confidence 3 3699999999999999999874 3 38899999999999999996543 8999999999999999986443 9
Q ss_pred cCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcc
Q 002250 203 VKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSG 267 (947)
Q Consensus 203 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~ 267 (947)
..+++|++|+|++|++++..+ +..+++|++|+|++|++++.+ .+..+++|+.|+|++|++++
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec
Confidence 999999999999999996543 889999999999999999776 48899999999999999984
No 345
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=220.49 Aligned_cols=226 Identities=19% Similarity=0.259 Sum_probs=157.1
Q ss_pred cCcEEEccCccccccCCc---CccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEE
Q 002250 278 HLTELSLYTNRLTGTLPQ---KLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRF 354 (947)
Q Consensus 278 ~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L 354 (947)
.++.+.+.++.++..... .+..+++|++|++++|.+++..|..+.. ..+++|+.|
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------~~~~~L~~L 122 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE----------------------ATGLALSSL 122 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS----------------------CCCBCCSSC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh----------------------ccCCCCCEE
Confidence 356666666665421100 1122455777777777777655544400 455566666
Q ss_pred EcccccccccCC----CCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCcccccc--C--CCCCCCCCcceEE
Q 002250 355 RVNNNSLSGTIP----PGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGE--L--PSKISEASSLVSI 426 (947)
Q Consensus 355 ~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L 426 (947)
++++|.+++..+ ..++.+++|++|+|++|++.+..+..|+.+++|++|+|++|++.+. + +..+..+++|++|
T Consensus 123 ~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 123 RLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL 202 (310)
T ss_dssp EEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred EeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence 666666665433 2334567777777777777777777777777777777777776542 2 2334677888888
Q ss_pred EcccCcccCCCCc----ccccccccchhhccccccCCCCCcccccc---cccceeeccCceeeeecCCCCCccCcCcEEE
Q 002250 427 QLSLNQFSGQIPL----DIGKLKKLSSLYLHDNMFSGPLPYSIGSC---VSLTDINFAQNSLSGKIPDSLGSLPSLNSLN 499 (947)
Q Consensus 427 ~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 499 (947)
+|++|+++ .++. .++.+++|++|+|++|++++..|..++.+ ++|++|+|++|+|+ .+|..+. ++|+.|+
T Consensus 203 ~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 203 ALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp BCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred ECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 88888887 3333 25677899999999999998878877776 68999999999998 7788775 7999999
Q ss_pred CCCCccCCccCCcccccccceeeCCCCcCCC
Q 002250 500 LSNNKFSGEIPISLTYPKLSLLDLSNNQLAG 530 (947)
Q Consensus 500 Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~ 530 (947)
|++|+|++. |....+++|+.|+|++|+++.
T Consensus 279 Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 279 LSSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred CCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 999999975 444456899999999999874
No 346
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1e-24 Score=245.87 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=19.5
Q ss_pred CCCCCccEEeccCCCCCC-----CCccccccCCCCEEEccCccCc
Q 002250 227 SNLTNLMNFDVSQNRLEG-----DLSELRFLNQLSSLHLFENQFS 266 (947)
Q Consensus 227 ~~l~~L~~L~Ls~N~l~~-----~~~~l~~l~~L~~L~L~~N~i~ 266 (947)
..+++|++|+|++|+++. .+..+..+++|++|+|++|.++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 444555555555555543 1223444455555555555554
No 347
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=4.9e-22 Score=231.47 Aligned_cols=219 Identities=21% Similarity=0.298 Sum_probs=114.3
Q ss_pred cccccccCCCCCc-----cccee-eeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCC
Q 002250 13 GVFSSWTEANSVC-----KFNGI-VCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTR 86 (947)
Q Consensus 13 ~~~~sw~~~~~~C-----~w~gv-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 86 (947)
..+.+|..+.+.| .|.|+ .|.. ++++.|+++++++.+ +| ..+ +++
T Consensus 31 ~~l~~W~~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp-------------------------~~l--~~~ 81 (571)
T 3cvr_A 31 SAWDKWEKQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LP-------------------------DNL--PPQ 81 (571)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CC-------------------------SCC--CTT
T ss_pred HHHHHHhccCCccccccchhhhcccccc-CCccEEEeCCCCCCc-cC-------------------------HhH--cCC
Confidence 3577887777778 78888 6763 345555555544443 33 222 144
Q ss_pred ccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEcc
Q 002250 87 LQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLT 166 (947)
Q Consensus 87 L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~ 166 (947)
|++|+|++|+|+..+ ..+++|++|+|++|+|++ +|. +.. +|++|+|++|.++. +|. .+++|+.|+|+
T Consensus 82 L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 82 ITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINAD 148 (571)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECC
T ss_pred CCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCC
Confidence 555555555555322 234445555555555443 331 222 45555555555443 222 33444444444
Q ss_pred CccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCC
Q 002250 167 NCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDL 246 (947)
Q Consensus 167 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 246 (947)
+|.|++ +|. .+++|++|+|++|+|++ +|. |. ++|++|+|++|+|+ .+|. |.. +|
T Consensus 149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L-------------- 202 (571)
T 3cvr_A 149 NNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN-------------- 202 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-------------------
T ss_pred CCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh--------------
Confidence 444443 332 34455555555555543 333 33 44555555555554 2332 221 22
Q ss_pred ccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccc
Q 002250 247 SELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWAD 302 (947)
Q Consensus 247 ~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 302 (947)
......|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 203 --~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 203 --HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred --hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 011122377777777777 56777777888888888888888777777666543
No 348
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3.7e-21 Score=213.27 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=98.0
Q ss_pred cCcEEEccCccccccCCcCccCcccccccccccccccCCCCC-CcccCCcccee-eecccccCCcCCccccCCCCccEEE
Q 002250 278 HLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPP-DMCKTGAMTDL-LVLQNNFNGTVPETYANCKSLIRFR 355 (947)
Q Consensus 278 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~l~~L-~l~~n~~~~~~p~~~~~l~~L~~L~ 355 (947)
++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|. .|..+.++.++ .+..|++.+..|..|..+++|+.|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 344444444444422223344444444444444444332222 12222222221 1222333334445555666666666
Q ss_pred cccccccccCCCCCCCCCCcceecccc-CCcCCCCCCcccccc-cccEEEccCccccccCCCCCCCCCcceEEEccc-Cc
Q 002250 356 VNNNSLSGTIPPGIWSLPNLSIIDLST-NQFEGPVTDDIGNAK-SLALLLLANNRFSGELPSKISEASSLVSIQLSL-NQ 432 (947)
Q Consensus 356 L~~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~ 432 (947)
+++|++++..+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+ .+|.......+|+.|++++ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCc
Confidence 666666544444444555555555533 344444444444432 3555555555555 3333333444555555543 34
Q ss_pred ccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCC
Q 002250 433 FSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSN 502 (947)
Q Consensus 433 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 502 (947)
++...+..|.++++|+.|+|++|+|+...+..|.++++|+.+++ +.++ .+|. +.++++|+.+++++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCCC-TTTCCSCCEEECSC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCCC-chhCcChhhCcCCC
Confidence 44222234455555555555555555433333443333333332 1222 3342 44445555555543
No 349
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.84 E-value=8.3e-22 Score=210.45 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=116.6
Q ss_pred cCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhh-hhcccCChhhHHHHHHHHhhccccccceEEE
Q 002250 631 VKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAI-LSKRSSRSSEYDAEVATLSAVRHVNVVKLYC 709 (947)
Q Consensus 631 ~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~ 709 (947)
|++.+.||+|+||.||+|...+|+.||||++.......+......... ..-.......+.+|++++++++| +++.+
T Consensus 92 ~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~---~~v~~ 168 (282)
T 1zar_A 92 DAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG---LAVPK 168 (282)
T ss_dssp SEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT---SSSCC
T ss_pred EEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC---CCcCe
Confidence 556699999999999999997799999999854322111000000000 00000124568899999999994 55555
Q ss_pred EEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEe
Q 002250 710 SITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIA 789 (947)
Q Consensus 710 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~ 789 (947)
++.. +..++||||+++|+|.+ +.. + ....++.|++.||+||| +.+|+||||||+|||++ ++.+||+
T Consensus 169 ~~~~-~~~~lvmE~~~g~~L~~-l~~------~--~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~~~vkl~ 234 (282)
T 1zar_A 169 VYAW-EGNAVLMELIDAKELYR-VRV------E--NPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-EEGIWII 234 (282)
T ss_dssp EEEE-ETTEEEEECCCCEEGGG-CCC------S--CHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-TTEEEEC
T ss_pred EEec-cceEEEEEecCCCcHHH-cch------h--hHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-CCcEEEE
Confidence 5443 56799999999999988 432 1 13368999999999999 89999999999999999 9999999
Q ss_pred ccccceecccCCCCcceecccccccccCcccccc
Q 002250 790 DFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYT 823 (947)
Q Consensus 790 DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 823 (947)
|||+|+. +..|+|||++..
T Consensus 235 DFG~a~~---------------~~~~~a~e~l~r 253 (282)
T 1zar_A 235 DFPQSVE---------------VGEEGWREILER 253 (282)
T ss_dssp CCTTCEE---------------TTSTTHHHHHHH
T ss_pred ECCCCeE---------------CCCCCHHHHHHH
Confidence 9999862 445788998743
No 350
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.6e-20 Score=208.05 Aligned_cols=239 Identities=15% Similarity=0.080 Sum_probs=146.0
Q ss_pred cEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCC-ccccCCCCccE-EEcc
Q 002250 280 TELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVP-ETYANCKSLIR-FRVN 357 (947)
Q Consensus 280 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p-~~~~~l~~L~~-L~L~ 357 (947)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++.+|+.|++.+|++.+.+| .+|.+++++.. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888888 777765 3578888888888885444456677777777777777666554 45666666554 4555
Q ss_pred cccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccC-ccccccCCCCCCCCC-cceEEEcccCcccC
Q 002250 358 NNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLAN-NRFSGELPSKISEAS-SLVSIQLSLNQFSG 435 (947)
Q Consensus 358 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~ 435 (947)
.|++++..|..|..+++|++|++++|++....+..+.....+..|++.+ |++....+..|..+. .++.|+|++|+|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 6777766666677777777777777777766665666666666666644 455544444555553 4666777777776
Q ss_pred CCCcccccccccchhhccc-cccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc
Q 002250 436 QIPLDIGKLKKLSSLYLHD-NMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT 514 (947)
Q Consensus 436 ~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 514 (947)
.+|.......+|+.|++++ |.++.+.+..|..+++|+.|||++|+|+...+..| .+|+.|.+.+++--..+|..-.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchh
Confidence 3444444455666666654 44554444456666677777777776663323333 3344444333332224454444
Q ss_pred ccccceeeCCC
Q 002250 515 YPKLSLLDLSN 525 (947)
Q Consensus 515 ~~~L~~L~ls~ 525 (947)
+++|+.+++++
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 56666666554
No 351
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=9e-21 Score=220.82 Aligned_cols=169 Identities=22% Similarity=0.272 Sum_probs=114.6
Q ss_pred CCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEE
Q 002250 133 TNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLE 212 (947)
Q Consensus 133 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 212 (947)
++|++|+|++|.|+. +| ..+++|++|+|++|+|++ +|. +.. +|++|+|++|+|++ +|. .+++|++|+
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 344455555554442 22 234555666666666654 444 443 67777777777664 444 466677777
Q ss_pred eecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcC-------cEEEcc
Q 002250 213 LYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHL-------TELSLY 285 (947)
Q Consensus 213 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-------~~L~L~ 285 (947)
|++|.|++ +|. .+++|++|+|++|++++.+. +. ++|+.|+|++|+|+ .+|. |.. +| +.|+|+
T Consensus 147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred CCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 77777764 443 45677777777777776555 44 77888888888887 5555 554 66 999999
Q ss_pred CccccccCCcCccCcccccccccccccccCCCCCCcccCCc
Q 002250 286 TNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGA 326 (947)
Q Consensus 286 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 326 (947)
+|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 99999 78999999999999999999999988887766543
No 352
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.2e-20 Score=190.60 Aligned_cols=144 Identities=22% Similarity=0.285 Sum_probs=79.0
Q ss_pred cccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcc
Q 002250 344 TYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSL 423 (947)
Q Consensus 344 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 423 (947)
.|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 34455555556666665554444445555566666666666555555555555555555555555554444445555555
Q ss_pred eEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCc
Q 002250 424 VSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPS 494 (947)
Q Consensus 424 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 494 (947)
+.|+|++|++++..+..+..+++|+.|+|++|.+.+ .+++|+.|+++.|+++|.+|..++.++.
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 555555555554444445555555555555555443 2345555555555555555555554443
No 353
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.6e-20 Score=221.43 Aligned_cols=191 Identities=26% Similarity=0.343 Sum_probs=106.8
Q ss_pred CcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceee
Q 002250 60 LQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLS 139 (947)
Q Consensus 60 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~ 139 (947)
+..+..++++.+.+.+..+ +..+++|+.|+|++|.|+.. +.+..+++|+.|+|++|.|.+..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEE
Confidence 3345555666666654433 45666777777777776643 346666666666666666664332 66666666666
Q ss_pred CCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeeccccc
Q 002250 140 LGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLS 219 (947)
Q Consensus 140 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~ 219 (947)
|++|.+... + .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|.|+
T Consensus 94 Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 94 LDENKIKDL--S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CCSSCCCCC--T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred CcCCCCCCC--h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 666666542 2 355555555555555555532 2355555566666666555533 44555555555555555555
Q ss_pred ccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCc
Q 002250 220 GRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFS 266 (947)
Q Consensus 220 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~ 266 (947)
+..| +..+++|+.|+|++|+|++. +.+..+++|+.|+|++|++.
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEE
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCc
Confidence 4333 55555555555555555443 33444555555555555554
No 354
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.3e-19 Score=184.99 Aligned_cols=160 Identities=23% Similarity=0.220 Sum_probs=107.0
Q ss_pred ccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEec
Q 002250 158 EKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDV 237 (947)
Q Consensus 158 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 237 (947)
++|++|++++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666666555555666677777777777776555555666777777777777776555555667777777777
Q ss_pred cCCCCCCCCcc-ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCC
Q 002250 238 SQNRLEGDLSE-LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGP 316 (947)
Q Consensus 238 s~N~l~~~~~~-l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (947)
++|++++.+.. +..+++|+.|+|++|++++..+..|..+++|++|++++|.+.+ .+++|++|+++.|.++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 77777665543 5666777777777777776555567777777777777776653 345677777777777777
Q ss_pred CCCCcccC
Q 002250 317 IPPDMCKT 324 (947)
Q Consensus 317 ~p~~~~~~ 324 (947)
+|..++.+
T Consensus 181 ip~~~~~l 188 (208)
T 2o6s_A 181 VRNSAGSV 188 (208)
T ss_dssp BBCTTSSB
T ss_pred eeccCccc
Confidence 77665543
No 355
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=3.8e-20 Score=199.11 Aligned_cols=171 Identities=22% Similarity=0.342 Sum_probs=91.3
Q ss_pred cccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCc
Q 002250 130 ENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLW 209 (947)
Q Consensus 130 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 209 (947)
..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|+|++|++++ + ..+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 3444444555554444432 1 24444555555555555553322 5555555555555555543 1 2355555555
Q ss_pred EEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccc
Q 002250 210 QLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRL 289 (947)
Q Consensus 210 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 289 (947)
+|+|++|++++. ..+..+++|++|++++|++++. +.+..+++|+.|+|++|++++..+ +..+++|++|+|++|++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 555555555532 3455555566666666655544 445556666666666666654333 56666666666666666
Q ss_pred cccCCcCccCccccccccccccccc
Q 002250 290 TGTLPQKLGSWADFNYVDVSENLLT 314 (947)
Q Consensus 290 ~~~~p~~l~~l~~L~~L~Ls~N~l~ 314 (947)
++ ++ .+..+++|+.|++++|+++
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCccc
Confidence 53 33 2566666666666666665
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2.6e-20 Score=200.47 Aligned_cols=189 Identities=24% Similarity=0.324 Sum_probs=94.7
Q ss_pred ccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCC
Q 002250 62 ALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLG 141 (947)
Q Consensus 62 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls 141 (947)
.+..+.+..+.+.+..+ +..+++|++|++++|.+++. +.+..+++|++|+|++|++++..+ +..+++|++|+|+
T Consensus 25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECC
Confidence 34444555555544322 34566666677766666643 345556666666666666654322 5555566666666
Q ss_pred CCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeeccccccc
Q 002250 142 DNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGR 221 (947)
Q Consensus 142 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 221 (947)
+|.++.. + .+..+++|++|++++|++++. ..+..+++|++|+|++|++++. ..+..+
T Consensus 99 ~n~l~~~--~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l---------------- 155 (291)
T 1h6t_A 99 ENKVKDL--S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL---------------- 155 (291)
T ss_dssp SSCCCCG--G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGC----------------
T ss_pred CCcCCCC--h-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccC----------------
Confidence 6555431 1 244444444444444444432 2344444455555555444432 334444
Q ss_pred CCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc
Q 002250 222 LPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 222 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 290 (947)
++|++|+|++|++++..+ +..+++|+.|+|++|+|++ ++ .+..+++|+.|++++|+++
T Consensus 156 --------~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 156 --------TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --------TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred --------CCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 444444444444444333 4444455555555555543 22 2555555555555555555
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=6e-20 Score=216.49 Aligned_cols=191 Identities=24% Similarity=0.336 Sum_probs=110.7
Q ss_pred CCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEE
Q 002250 84 CTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWL 163 (947)
Q Consensus 84 l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L 163 (947)
+.++..++|+.+.+++.. .+..|++|+.|+|++|.|... + .+..+++|+.|+|++|.+... +. +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l-~--~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCC-T--TGGGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEE
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCC-h--HHccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEE
Confidence 334555666666665432 245666677777777766532 2 466666777777777666543 22 5566666666
Q ss_pred EccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCC
Q 002250 164 YLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLE 243 (947)
Q Consensus 164 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 243 (947)
+|++|.+++ +| .+..+++|+.|+|++|+|.+. ..+..+++|+.|+|++|.|++. ..|..+++|+.|+|++|+++
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 666666663 22 566666666666666666532 3455666666666666666543 44555666666666666655
Q ss_pred CCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc
Q 002250 244 GDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 244 ~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 290 (947)
+.++ +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+++
T Consensus 167 ~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 167 DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred Cchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 5444 55555555555555555532 23555555555555555555
No 358
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=4.5e-19 Score=183.57 Aligned_cols=165 Identities=20% Similarity=0.199 Sum_probs=116.3
Q ss_pred cccccccCCCCCcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccCcCchhhhcCCCccEEeC
Q 002250 13 GVFSSWTEANSVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDL 92 (947)
Q Consensus 13 ~~~~sw~~~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 92 (947)
....-|..+++.|.|.+|.|+..+ .+.+|. .+ .++|+.|+|++|.|.+..|..|..+++|++|+|
T Consensus 7 ~~~~~~~~~~~~Cs~~~v~c~~~~------------l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 71 (229)
T 3e6j_A 7 HHHSAACPSQCSCSGTTVDCRSKR------------HASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYL 71 (229)
T ss_dssp ----CCCCTTCEEETTEEECTTSC------------CSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred chhhccCCCCCEEeCCEeEccCCC------------cCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEEC
Confidence 444556678889999999998643 223332 12 278899999999998888888999999999999
Q ss_pred cCccCcCCCCC-cccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCcccc
Q 002250 93 GNNSFSGEVPD-LSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVT 171 (947)
Q Consensus 93 s~n~i~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~ 171 (947)
++|+|++.++. +..+++|++|+|++|+|++..+ ..|..+++|++|+|++|++.. +|..+..+++|++|+|++|+++
T Consensus 72 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCC
T ss_pred CCCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCC
Confidence 99998876655 6778888888888888874433 566777777777777777763 4555666666666666666666
Q ss_pred ccCCccCCCCCCCCEEECcCcccc
Q 002250 172 GQIPEGIGNLTQLQNLELSDNELF 195 (947)
Q Consensus 172 ~~~p~~~~~l~~L~~L~Ls~N~l~ 195 (947)
+..+..|..+++|+.|+|++|.+.
T Consensus 149 ~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 149 SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555666666666666666654
No 359
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=184.85 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=114.6
Q ss_pred cEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCC-CcccccccccEEEccCccccccCCCCCCCCCcceEEEccc
Q 002250 352 IRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVT-DDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSL 430 (947)
Q Consensus 352 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 430 (947)
+.+++++|.++ .+|..+. +.++.|+|++|+|++..+ ..|..+++|++|+|++|+|++..+..|..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 4565543 345777888888776643 4567777778888888877766666777777888888888
Q ss_pred CcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccC
Q 002250 431 NQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIP 510 (947)
Q Consensus 431 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 510 (947)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|.+++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88776666667777777777777777777777777777777777777777777767777777777777777777775544
No 360
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=1.1e-19 Score=202.15 Aligned_cols=179 Identities=22% Similarity=0.154 Sum_probs=111.6
Q ss_pred eeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCC-CCCcceEEEcccCcccCCCCcccccccccchhhcccc
Q 002250 377 IIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKIS-EASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDN 455 (947)
Q Consensus 377 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 455 (947)
.+++++|+++.+ |..+. ..++.|+|++|+|++..+..+. .+++|+.|+|++|+|++..+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 445555555432 22221 2355566666666555555555 6666666666666666555556666666666666666
Q ss_pred ccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCcc----cccccceeeCCCCcCCCC
Q 002250 456 MFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISL----TYPKLSLLDLSNNQLAGP 531 (947)
Q Consensus 456 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~~~L~~L~ls~N~l~~~ 531 (947)
+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++.++..+ .+++|+.|||++|+|++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 6666666667777777777777777776667777777777777777777776554443 257777777777777765
Q ss_pred CCCcccc-c---ccccccccCCCCCCCCccc
Q 002250 532 IPEPLNI-K---AFIDSFTGNPGLCSKTDEY 558 (947)
Q Consensus 532 ~p~~~~~-~---~~~~~~~gN~~~c~~~~~~ 558 (947)
++..+.. . .....+.+|||.|+|...+
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred CHHHhhhccHhhcceEEecCCCccCCcCcHH
Confidence 4433321 1 1234678999999987543
No 361
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.4e-21 Score=228.98 Aligned_cols=217 Identities=20% Similarity=0.175 Sum_probs=138.1
Q ss_pred cCCcccceeeccCccccCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCce
Q 002250 58 CGLQALQKINLGTNFLYGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEF 137 (947)
Q Consensus 58 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~ 137 (947)
..+++|+.|+|++|.+ +.+|..++.|++|++|++++|......+ .+ +..+.+.+..| ..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---------~l-l~~~~~~~~~~-~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTII---------LL-MRALDPLLYEK-ETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHH---------HH-HHHHCTGGGHH-HHHHHHHHHHH
T ss_pred ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHH---------HH-HHhcccccCCH-HHHHHHHhccc
Confidence 3455555556665555 3455555555555555554443100000 00 00011333333 56777777887
Q ss_pred ee-CCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecc
Q 002250 138 LS-LGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNN 216 (947)
Q Consensus 138 L~-Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n 216 (947)
|+ ++.|. +..|+.+.+++|.++...+ ..|+.|+|++|+|++ +|. +..+++|++|+|++|
T Consensus 414 L~~l~~n~------------~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 414 VDPMRAAY------------LDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HCGGGHHH------------HHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred Ccchhhcc------------cchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 77 55553 2355666677777764322 247788888888874 555 778888888888888
Q ss_pred cccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccC-CCCccCCCcCcEEEccCccccccCCc
Q 002250 217 SLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEI-PEEFGEFKHLTELSLYTNRLTGTLPQ 295 (947)
Q Consensus 217 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~ 295 (947)
.|+ .+|..|+.+++|+.|+|++|+|++++ .+..+++|+.|+|++|+|++.. |..|+.+++|+.|+|++|++++..|.
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 888 67778888888888888888887755 7777888888888888887665 77888888888888888888754432
Q ss_pred C---ccCccccccccc
Q 002250 296 K---LGSWADFNYVDV 308 (947)
Q Consensus 296 ~---l~~l~~L~~L~L 308 (947)
. +..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2 223566666653
No 362
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4.8e-19 Score=182.08 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=112.0
Q ss_pred cEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccC
Q 002250 352 IRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLN 431 (947)
Q Consensus 352 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 431 (947)
+.++++++.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45677777776 4555443 56777777777777766667777777777777777777666777777777777777777
Q ss_pred cccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCC
Q 002250 432 QFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSG 507 (947)
Q Consensus 432 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 507 (947)
+|+...+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7775555556777777777777777777777777777777777777777776666667777777777777777764
No 363
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=4.3e-22 Score=233.44 Aligned_cols=216 Identities=20% Similarity=0.186 Sum_probs=166.8
Q ss_pred cCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccE
Q 002250 274 GEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIR 353 (947)
Q Consensus 274 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~ 353 (947)
..+++|+.|+|++|+++ .+|..++.+++|+.|++++|.....+| ..+..++..+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~-----------~ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII-----------LLMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHH-----------HHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHH-----------HHHHhcccccCCHHHHHHHHhccc
Confidence 56778888888888887 788888888888888887665311111 112234455677788888888888
Q ss_pred EE-cccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCc
Q 002250 354 FR-VNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQ 432 (947)
Q Consensus 354 L~-L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 432 (947)
|+ ++.|.+. +|..+.+++|.++...+ ..|+.|+|++|+|++ +|. +..+++|+.|+|++|+
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 87 6766553 67777888888765332 247888999998884 666 8888899999999999
Q ss_pred ccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeec-CCCCCccCcCcEEECCCCccCCccCC
Q 002250 433 FSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKI-PDSLGSLPSLNSLNLSNNKFSGEIPI 511 (947)
Q Consensus 433 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~ 511 (947)
|+ .+|..|+++++|+.|+|++|+|++ +| .|+.+++|+.|+|++|+|++.+ |..++.+++|+.|+|++|+|++.+|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 88 788888899999999999999986 56 7888999999999999998776 88899999999999999999888775
Q ss_pred ccc----ccccceeeC
Q 002250 512 SLT----YPKLSLLDL 523 (947)
Q Consensus 512 ~~~----~~~L~~L~l 523 (947)
... +++|+.||+
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 432 478888864
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=178.01 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=78.6
Q ss_pred EEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCc
Q 002250 89 VLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNC 168 (947)
Q Consensus 89 ~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 168 (947)
.+++++|.++..+..+. ..+++|+|++|+|++..+...|..+++|++|+|++|+|+..+ +..+..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCC
Confidence 44444444443332221 123444444444443323233455555555555555544321 223444555555555555
Q ss_pred cccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCC
Q 002250 169 SVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEG 244 (947)
Q Consensus 169 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 244 (947)
.+++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 5554555555566666666666666665555566666666666666666665555556666666666666555543
No 365
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.6e-18 Score=176.56 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=91.3
Q ss_pred EEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCC
Q 002250 162 WLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNR 241 (947)
Q Consensus 162 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 241 (947)
.++++++.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444455544 3343333 455666666666655555555566666666666666665555666666666666666666
Q ss_pred CCCCCcc-ccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccC
Q 002250 242 LEGDLSE-LRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTG 315 (947)
Q Consensus 242 l~~~~~~-l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (947)
|+..+.. +..+++|+.|+|++|+|++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 6655443 4556666666666666666666666666677777777777765555566666677777777776653
No 366
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=4.7e-19 Score=197.11 Aligned_cols=176 Identities=22% Similarity=0.221 Sum_probs=124.2
Q ss_pred cEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCccc-ccccccEEEccCccccccCCCCCCCCCcceEEEccc
Q 002250 352 IRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIG-NAKSLALLLLANNRFSGELPSKISEASSLVSIQLSL 430 (947)
Q Consensus 352 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 430 (947)
+.+++++|.++ .+|..+. +.++.|+|++|+|++..+..|. .+++|++|+|++|+|++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46677777776 4555443 3467777777777776666666 777777777777777766666777777777777777
Q ss_pred CcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCC---CccCcCcEEECCCCccCC
Q 002250 431 NQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSL---GSLPSLNSLNLSNNKFSG 507 (947)
Q Consensus 431 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~ 507 (947)
|+|++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776666667777788888888888777777778788888888888888875433334 567788888888888886
Q ss_pred ccCCccc-ccc--cceeeCCCCcCCC
Q 002250 508 EIPISLT-YPK--LSLLDLSNNQLAG 530 (947)
Q Consensus 508 ~~p~~~~-~~~--L~~L~ls~N~l~~ 530 (947)
.++..+. ++. ++.|+|++|++.+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 5544443 343 4778888888764
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.3e-18 Score=184.03 Aligned_cols=171 Identities=21% Similarity=0.275 Sum_probs=110.4
Q ss_pred cccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCC
Q 002250 106 MLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQ 185 (947)
Q Consensus 106 ~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 185 (947)
.+.++..+++++|.+++.. .+..+++|++|++++|.++.. + .+..+++|++|+|++|++++..+ +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence 3455555666666655332 356666666666666666543 2 45666667777777777664433 67777777
Q ss_pred EEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccC
Q 002250 186 NLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQF 265 (947)
Q Consensus 186 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i 265 (947)
+|+|++|++++ +|. +.. ++|++|+|++|++++. ..+..+++|++|+|++|++++.+ .+..+++|+.|+|++|+|
T Consensus 89 ~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCC
T ss_pred EEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcC
Confidence 77777777764 332 222 6677777777777743 34677777777777777776653 566677777777777777
Q ss_pred cccCCCCccCCCcCcEEEccCcccccc
Q 002250 266 SGEIPEEFGEFKHLTELSLYTNRLTGT 292 (947)
Q Consensus 266 ~~~~~~~~~~l~~L~~L~L~~N~l~~~ 292 (947)
++. ..+..+++|+.|++++|++++.
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 754 5677777777777777777643
No 368
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=5.4e-19 Score=187.01 Aligned_cols=171 Identities=22% Similarity=0.273 Sum_probs=147.9
Q ss_pred ccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcE
Q 002250 131 NLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQ 210 (947)
Q Consensus 131 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 210 (947)
.+.+++.+++++|.++... .+..+++|++|++++|.++. +| .+..+++|++|+|++|+|++..+ +.++++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 6777889999999997643 57889999999999999994 55 78999999999999999986544 999999999
Q ss_pred EEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc
Q 002250 211 LELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 211 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 290 (947)
|+|++|++++. |. +.. ++|++|+|++|++++. +.+..+++|+.|+|++|+|++. + .+..+++|++|+|++|+++
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 99999999964 43 333 9999999999999875 4688999999999999999964 3 6889999999999999998
Q ss_pred ccCCcCccCcccccccccccccccCC
Q 002250 291 GTLPQKLGSWADFNYVDVSENLLTGP 316 (947)
Q Consensus 291 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ 316 (947)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 7789999999999999999854
No 369
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1e-17 Score=173.29 Aligned_cols=151 Identities=23% Similarity=0.219 Sum_probs=92.0
Q ss_pred ceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeec
Q 002250 136 EFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYN 215 (947)
Q Consensus 136 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 215 (947)
+.++.+++.+... |..+ .++|++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 22 ~~v~c~~~~l~~i--p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHASV--PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCSSC--CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcCcc--CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4455555555432 2222 25566666666666666666666666666666666666554445566666666666666
Q ss_pred ccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc
Q 002250 216 NSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 216 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 290 (947)
|+|++..+..|..+++|++|+|++|+++.++..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 666655555566666666666666666655555666666666666666666554455666666666666666655
No 370
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=4.5e-18 Score=171.75 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=84.4
Q ss_pred cccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCc
Q 002250 130 ENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLW 209 (947)
Q Consensus 130 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 209 (947)
..+++|++|++++|.+.. +| .+..+++|++|++++|.++ .+..+..+++|++|+|++|++++..+..+.++++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 444555555555555543 22 3445555555555555444 123555566666666666666555555666666666
Q ss_pred EEEeecccccccCCccCCCCCCccEEeccCCC-CCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcc
Q 002250 210 QLELYNNSLSGRLPVGFSNLTNLMNFDVSQNR-LEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNR 288 (947)
Q Consensus 210 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 288 (947)
+|+|++|++++..+..+..+++|++|+|++|+ ++.. +.+..+++|+.|++++|++++ ++ .+..+++|++|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 66666666665555556666666666666665 4333 345556666666666666653 22 45666666666666666
Q ss_pred cc
Q 002250 289 LT 290 (947)
Q Consensus 289 l~ 290 (947)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 371
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=4.7e-18 Score=170.67 Aligned_cols=176 Identities=22% Similarity=0.244 Sum_probs=118.0
Q ss_pred ceeccccCCcCCCCCCcccccccccEEEccCccccccCCC-CCCCCCcceEEEcccCcccCCCCcccccccccchhhccc
Q 002250 376 SIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPS-KISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHD 454 (947)
Q Consensus 376 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 454 (947)
+.+++++|+++. +|..+. .++++|++++|+|++..+. .|..+++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 455666666643 233222 2566666666666644443 367777777777777777777677777778888888888
Q ss_pred cccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCcccccccceeeCCCCcCCCCCCC
Q 002250 455 NMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLTYPKLSLLDLSNNQLAGPIPE 534 (947)
Q Consensus 455 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~L~~L~ls~N~l~~~~p~ 534 (947)
|+|++..|..|..+++|++|+|++|+|++.+|..|..+++|+.|+|++|++++..+...-...++...+..+...+..|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 88887777778888888888888888888888888888899999999999887765432223344445556666555565
Q ss_pred cccccccccccccCCCCCCCC
Q 002250 535 PLNIKAFIDSFTGNPGLCSKT 555 (947)
Q Consensus 535 ~~~~~~~~~~~~gN~~~c~~~ 555 (947)
.+.. .....+..+...|..+
T Consensus 168 ~l~~-~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 168 KVRD-VQIKDLPHSEFKCSSE 187 (192)
T ss_dssp TTTT-SBGGGSCTTTCCCCCC
T ss_pred HHcC-CChhhCcHhhcCcCCC
Confidence 5432 2223455566666544
No 372
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=5.2e-19 Score=214.00 Aligned_cols=194 Identities=22% Similarity=0.221 Sum_probs=80.7
Q ss_pred ccc-CCCCCcccceeeeCCCCceeEeccCCCccccccCcccccCCcccceeeccCccccC---------cCchhhhcCCC
Q 002250 17 SWT-EANSVCKFNGIVCDSNGLVAEINLPEQQLLGVVPFDSICGLQALQKINLGTNFLYG---------TITEGLKSCTR 86 (947)
Q Consensus 17 sw~-~~~~~C~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~l~~l~~ 86 (947)
+|. ..+..+.|.+++++. ++++.++|..+++... + . ..|+.++|+.|.|.+ ..++.+..+++
T Consensus 154 ~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~-~-----~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~ 225 (727)
T 4b8c_D 154 QPTGDSTPSGTATNSAVST-PLTPKIELFANGKDEA-N-Q-----ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQL 225 (727)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CCcCCCCccccCCCceecC-CccceEEeeCCCCCcc-h-h-----hHhhcCccCcccccCccccccceecChhhhccCCC
Confidence 453 345568899988886 7889999987776542 2 1 223444454444432 34566667777
Q ss_pred ccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEcc
Q 002250 87 LQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLT 166 (947)
Q Consensus 87 L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~ 166 (947)
|+.|+|++|.|...++.+..+++|++|+|++|.|+ .+| ..|.+|++|++|+|++|.|+. +|..+..+++|++|+|+
T Consensus 226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELP-AEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCC-GGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECC
T ss_pred CcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccC-hhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECC
Confidence 77777777777655555556666666666666666 444 456666666666666666652 45556666666666666
Q ss_pred CccccccCCccCCCCCCCCEEECcCcccccccCccccCCCC-CcEEEeecccccccCC
Q 002250 167 NCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNK-LWQLELYNNSLSGRLP 223 (947)
Q Consensus 167 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~ 223 (947)
+|.|+ .+|..|+++++|++|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 66665 45555666666666666666666555555543321 1224555555554444
No 373
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=6.4e-18 Score=170.61 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=97.3
Q ss_pred ccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCC
Q 002250 129 LENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKL 208 (947)
Q Consensus 129 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 208 (947)
+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..|..++.+++|++|+|++|++++..|..+..+++|
T Consensus 62 l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp GGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred HhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 4555556666666664433 2246667777777777777776677788888888888888888887777888888888
Q ss_pred cEEEeeccc-ccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcc
Q 002250 209 WQLELYNNS-LSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSG 267 (947)
Q Consensus 209 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~ 267 (947)
++|+|++|. ++ .+| .+..+++|++|++++|++++.. .+..+++|+.|++++|+|.+
T Consensus 139 ~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 NSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 888888887 66 344 6788888888888888888654 77888888888888888763
No 374
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.8e-18 Score=209.29 Aligned_cols=163 Identities=20% Similarity=0.228 Sum_probs=89.7
Q ss_pred EEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeeccccc
Q 002250 258 LHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNF 337 (947)
Q Consensus 258 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~ 337 (947)
+++..|.+. ..+..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~----------------------- 260 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT----------------------- 260 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-----------------------
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-----------------------
Confidence 345556655 56667777777777777777776 56665556666666666666655
Q ss_pred CCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCC
Q 002250 338 NGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKI 417 (947)
Q Consensus 338 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 417 (947)
.+|..|+.+++|++|+|++|+|+ .+|..|+.+++|++|+|++|.|+ .+|..|
T Consensus 261 --------------------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 261 --------------------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp --------------------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred --------------------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence 23333444445555555555555 34555556666666666666665 667777
Q ss_pred CCCCcceEEEcccCcccCCCCcccccccc-cchhhccccccCCCCCcccccccccceeeccCc
Q 002250 418 SEASSLVSIQLSLNQFSGQIPLDIGKLKK-LSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQN 479 (947)
Q Consensus 418 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 479 (947)
..+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++|
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 77888888888888888777777765532 335778888888777653 344556665
No 375
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.71 E-value=1.2e-17 Score=176.07 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=107.7
Q ss_pred cCCcccccccCceeEEEEEe-CCCcE--EEEEEecCCCCCCCCCccc-------hhhhhhcccCChhhHHHHHHHHhhcc
Q 002250 631 VKPENLIGKGGSGNVYKVVL-NSGKE--LAVKHIWPSNSGFRGDYRS-------STAILSKRSSRSSEYDAEVATLSAVR 700 (947)
Q Consensus 631 ~~~~~~iG~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~E~~~l~~l~ 700 (947)
|++.+.||+|+||.||+|.. .+|+. ||||+++......+..... ..............+.+|+.++.++.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999997 67989 9999985443221110000 00000000111246889999999999
Q ss_pred cccc--ceEEEEEecCCccEEEEeccCC-C----ChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccC
Q 002250 701 HVNV--VKLYCSITSEDSNLLVYEYLPN-G----SLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDV 773 (947)
Q Consensus 701 h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dl 773 (947)
|+++ ..++++ ...++||||+.+ | +|.++... .++.....++.|++.||+|||. +.+|+||||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDl 197 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQ--EAELVHADL 197 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSC
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCC
Confidence 8864 444443 367899999942 4 66665443 2234566789999999999994 479999999
Q ss_pred CCCCeEecCCCCeEEeccccceec
Q 002250 774 KSSNILLDLEWKPRIADFGLAKIV 797 (947)
Q Consensus 774 kp~NIll~~~~~~kl~DfG~a~~~ 797 (947)
||+|||+++ .++|+|||+|...
T Consensus 198 kp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 198 SEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp STTSEEESS--SEEECCCTTCEET
T ss_pred CHHHEEEcC--cEEEEECcccccC
Confidence 999999998 9999999999754
No 376
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.5e-17 Score=180.74 Aligned_cols=289 Identities=12% Similarity=0.096 Sum_probs=180.0
Q ss_pred CCcccceeeccCccccCcCchhhhc-CCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccc------
Q 002250 59 GLQALQKINLGTNFLYGTITEGLKS-CTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLEN------ 131 (947)
Q Consensus 59 ~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~------ 131 (947)
.+.+++.|.++++ +.......+.. +++|+.|||++|+|......-+.++.+..+.+..|.| |..+|.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I----~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV----PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE----CTTTTEEEETTEE
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccccc----CHHHhcccccccc
Confidence 4677888888764 32333344555 7889999999999882111112233356666666644 3367777
Q ss_pred --cCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCccc----ccccCccccCC
Q 002250 132 --LTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNEL----FGEIPAGIVKL 205 (947)
Q Consensus 132 --l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l----~~~~~~~l~~l 205 (947)
+++|+.|+|.+ .++.++ +..|.++++|+.|++++|.++.+.+..|.++.++..+.+..+.. .......|.++
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~-~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIE-DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-TCCEEC-TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-cccchh-HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 88888888887 665543 44567777777777777777766677777776666666665322 22233445555
Q ss_pred CCCc-EEEeeccc-ccccCCccCCCCCCccEEeccCCCCCCCCcccc-ccCCCCEEEccCccCcccCCCCccCCCcCcEE
Q 002250 206 NKLW-QLELYNNS-LSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELR-FLNQLSSLHLFENQFSGEIPEEFGEFKHLTEL 282 (947)
Q Consensus 206 ~~L~-~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 282 (947)
..|+ .+.+.... +.......-....+++.+.+.++-.......+. .+++|+.|+|++|+++.+.+.+|.++++|++|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 5555 44443221 111111111123455555555442111111121 26778888888887876666778888888888
Q ss_pred EccCccccccCCcCccCccccc-ccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccc
Q 002250 283 SLYTNRLTGTLPQKLGSWADFN-YVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSL 361 (947)
Q Consensus 283 ~L~~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l 361 (947)
+|.+| ++...+.+|.++.+|+ .+++.+ .++ ...+.+|.+|++|+.+++++|.+
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~------------------------~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT------------------------AIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC------------------------EECTTTTTTCTTEEEEEECSSCC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cce------------------------EEchhhhhCCccCCEEEeCCCcc
Confidence 88777 6656666777777777 777765 443 23456788888888888888888
Q ss_pred cccCCCCCCCCCCcceecc
Q 002250 362 SGTIPPGIWSLPNLSIIDL 380 (947)
Q Consensus 362 ~~~~p~~~~~l~~L~~L~L 380 (947)
+.+.+..|.++++|+.++.
T Consensus 310 ~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 310 TTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTCTTCCCCEEEC
T ss_pred CccchhhhcCCcchhhhcc
Confidence 8777778888888888763
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.3e-17 Score=182.95 Aligned_cols=225 Identities=11% Similarity=0.040 Sum_probs=119.2
Q ss_pred cCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceee
Q 002250 252 LNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLL 331 (947)
Q Consensus 252 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~ 331 (947)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++++|.++...+.+|....++..+.+..+....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~---------------- 162 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR---------------- 162 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH----------------
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh----------------
Confidence 56666666666 5555555666666667777766666665555566655555555444322100
Q ss_pred ecccccCCcCCccccCCCCcc-EEEccccc-ccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccc
Q 002250 332 VLQNNFNGTVPETYANCKSLI-RFRVNNNS-LSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRF 409 (947)
Q Consensus 332 l~~n~~~~~~p~~~~~l~~L~-~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 409 (947)
........+|.++..|+ .+.+.... +.......-....++..+.+.++-...........+++|+.++|++|++
T Consensus 163 ----~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 163 ----FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp ----TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC
T ss_pred ----ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc
Confidence 00001112233333333 22222111 0000000001123344444433311100000011245666777776666
Q ss_pred cccCCCCCCCCCcceEEEcccCcccCCCCcccccccccc-hhhccccccCCCCCcccccccccceeeccCceeeeecCCC
Q 002250 410 SGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLS-SLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDS 488 (947)
Q Consensus 410 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 488 (947)
+...+.+|.++++|+.|+|++| ++...+.+|.++++|+ .|+|.+ .++.+.+.+|.+|++|+.|++++|+++...+.+
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a 316 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL 316 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT
T ss_pred ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhh
Confidence 6555556777777777777766 5545556677777777 777766 566566677777777777777777777666667
Q ss_pred CCccCcCcEEE
Q 002250 489 LGSLPSLNSLN 499 (947)
Q Consensus 489 ~~~l~~L~~L~ 499 (947)
|.++++|+.++
T Consensus 317 F~~~~~L~~ly 327 (329)
T 3sb4_A 317 FGNGVPSKLIY 327 (329)
T ss_dssp TCTTCCCCEEE
T ss_pred hcCCcchhhhc
Confidence 77777777765
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.3e-16 Score=159.98 Aligned_cols=112 Identities=24% Similarity=0.326 Sum_probs=78.2
Q ss_pred CCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEe
Q 002250 134 NLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLEL 213 (947)
Q Consensus 134 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 213 (947)
+|++|+|++|.++..+....+..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 45555555555544322223556666666666666666666777777888888888888887777777777888888888
Q ss_pred ecccccccCCccCCCCCCccEEeccCCCCCCC
Q 002250 214 YNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGD 245 (947)
Q Consensus 214 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 245 (947)
++|+|++..|..|..+++|++|+|++|.+.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 88888877777777777777777777777654
No 379
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=158.83 Aligned_cols=125 Identities=25% Similarity=0.312 Sum_probs=91.9
Q ss_pred cEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCc
Q 002250 400 ALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQN 479 (947)
Q Consensus 400 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 479 (947)
+.+++++|+++ .+|..+. ++|+.|+|++|+|+ .+|..|.++++|+.|+|++|.|++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666666 5555443 46777778888777 66677778888888888888888777777888888888888888
Q ss_pred eeeeecCCCCCccCcCcEEECCCCccCCccCCccc-ccccceeeCCCCcC
Q 002250 480 SLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQL 528 (947)
Q Consensus 480 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l 528 (947)
+|++..|..|.++++|+.|+|++|+|++.++..+. +++|+.|+|++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 88877777788888888888888888866665554 57777777665444
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.5e-16 Score=154.47 Aligned_cols=129 Identities=29% Similarity=0.347 Sum_probs=52.8
Q ss_pred CcEEEccCcccc-ccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEecc
Q 002250 160 LYWLYLTNCSVT-GQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVS 238 (947)
Q Consensus 160 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 238 (947)
|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|+|+
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 333333333333 23333344444444444444444322 334444444444444444443333333334444444444
Q ss_pred CCCCCCCC--ccccccCCCCEEEccCccCcccCC---CCccCCCcCcEEEccCcccc
Q 002250 239 QNRLEGDL--SELRFLNQLSSLHLFENQFSGEIP---EEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 239 ~N~l~~~~--~~l~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~ 290 (947)
+|++++.+ ..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 44444322 233344444444444444442222 13444444444444444443
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=3.4e-16 Score=153.48 Aligned_cols=131 Identities=24% Similarity=0.216 Sum_probs=73.9
Q ss_pred CCccEEeCcCccCc-C-CCCCcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcE
Q 002250 85 TRLQVLDLGNNSFS-G-EVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYW 162 (947)
Q Consensus 85 ~~L~~L~Ls~n~i~-~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~ 162 (947)
++|++|+|++|.++ + .+..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+... +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCE
Confidence 44555555555554 2 222234455555555555555432 2455555555555555555443 3444445666666
Q ss_pred EEccCccccccC-CccCCCCCCCCEEECcCcccccccC---ccccCCCCCcEEEeeccccc
Q 002250 163 LYLTNCSVTGQI-PEGIGNLTQLQNLELSDNELFGEIP---AGIVKLNKLWQLELYNNSLS 219 (947)
Q Consensus 163 L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 219 (947)
|+|++|.+++.. +..+..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666665432 1566677777777777777764443 36677777777777777776
No 382
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=4.4e-16 Score=149.31 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=72.2
Q ss_pred CcccceeeccCcccc-CcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCcccccccCCCcee
Q 002250 60 LQALQKINLGTNFLY-GTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFL 138 (947)
Q Consensus 60 l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L 138 (947)
.++|+.|++++|.+. +.+|..+..+++|++|+|++|.+++. +.+..+++|++|+|++|.+++.+| ..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCCEE
Confidence 356666666666665 45666666666666666666666654 445555556666666665554333 334445555555
Q ss_pred eCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccC---ccccCCCCCcEEEee
Q 002250 139 SLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIP---AGIVKLNKLWQLELY 214 (947)
Q Consensus 139 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~L~ 214 (947)
++++|.++..+ .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLS------------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHH------------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChH------------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555544322 22455555566666666666554433 345556666666554
No 383
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.61 E-value=3e-16 Score=171.01 Aligned_cols=149 Identities=17% Similarity=0.131 Sum_probs=101.1
Q ss_pred cCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCCh--------hhHHHHHHHHhhcccc
Q 002250 631 VKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRS--------SEYDAEVATLSAVRHV 702 (947)
Q Consensus 631 ~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~E~~~l~~l~h~ 702 (947)
|++.+.||+|+||.||+|...+|+.||||+++.....++..... ... ...... ....+|...+.++.+.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~-r~~--~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~ 173 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKAN-RDY--LRNRSTGSWMYLSRLAAIKEFAFMKALYEE 173 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC---CEE--CTTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHH-HHH--HHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999986543322211000 000 000011 1123566666666444
Q ss_pred ccc--eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEe
Q 002250 703 NVV--KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILL 780 (947)
Q Consensus 703 niv--~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll 780 (947)
++. +.+++ ...++||||++|++|.++... .. ...++.|++.+|.||| ..+||||||||.|||+
T Consensus 174 gv~vp~p~~~----~~~~LVME~i~G~~L~~l~~~-----~~---~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl 238 (397)
T 4gyi_A 174 GFPVPEPIAQ----SRHTIVMSLVDALPMRQVSSV-----PD---PASLYADLIALILRLA---KHGLIHGDFNEFNILI 238 (397)
T ss_dssp TCSCCCEEEE----ETTEEEEECCSCEEGGGCCCC-----SC---HHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEE
T ss_pred CCCCCeeeec----cCceEEEEecCCccHhhhccc-----HH---HHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEE
Confidence 332 22221 234799999999888655432 11 2457789999999999 7899999999999999
Q ss_pred cCCCC----------eEEeccccceec
Q 002250 781 DLEWK----------PRIADFGLAKIV 797 (947)
Q Consensus 781 ~~~~~----------~kl~DfG~a~~~ 797 (947)
++++. +.|+||+-+...
T Consensus 239 ~~dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 239 REEKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp EEEECSSCTTSEEEEEEECCCTTCEET
T ss_pred eCCCCcccccccccceEEEEeCCcccC
Confidence 87763 899999987643
No 384
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=7e-16 Score=147.91 Aligned_cols=126 Identities=29% Similarity=0.335 Sum_probs=65.5
Q ss_pred ccCcEEEccCcccc-ccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEe
Q 002250 158 EKLYWLYLTNCSVT-GQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFD 236 (947)
Q Consensus 158 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 236 (947)
++|+.|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 45555556666666666666666543 4555555555555555555544454444555555555
Q ss_pred ccCCCCCCCC--ccccccCCCCEEEccCccCcccCC---CCccCCCcCcEEEcc
Q 002250 237 VSQNRLEGDL--SELRFLNQLSSLHLFENQFSGEIP---EEFGEFKHLTELSLY 285 (947)
Q Consensus 237 Ls~N~l~~~~--~~l~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~ 285 (947)
+++|++++.+ ..+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555432 334444455555555555543322 234444455554443
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=2.7e-15 Score=148.41 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=72.8
Q ss_pred cEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCc
Q 002250 400 ALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQN 479 (947)
Q Consensus 400 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 479 (947)
+.+++++|+++ .+|..+. ++|+.|++++|++++..+..|+++++|++|+|++|++++..+..|+.+++|+.|+|++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34444444444 3332221 34555555555555444444555555666666666655555555566666666666666
Q ss_pred eeeeecCCCCCccCcCcEEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCC
Q 002250 480 SLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIP 533 (947)
Q Consensus 480 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p 533 (947)
+|++..+..+..+++|+.|+|++|++++.++..+. +++|+.|+|++|++++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66655555556666666666666666655544433 4666666666666665544
No 386
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=150.90 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=95.7
Q ss_pred ceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhcccc
Q 002250 376 SIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDN 455 (947)
Q Consensus 376 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 455 (947)
+.+++++|+++.+ |..+ ..+|++|+|++|+|+ .+|..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3455556665533 2222 245667777777776 56667777777777777777777666677788888888888888
Q ss_pred ccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCc
Q 002250 456 MFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGE 508 (947)
Q Consensus 456 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 508 (947)
+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 88877777888888888888888888866666788899999999999988753
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=3.2e-15 Score=147.87 Aligned_cols=133 Identities=23% Similarity=0.247 Sum_probs=99.6
Q ss_pred cceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccc
Q 002250 375 LSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHD 454 (947)
Q Consensus 375 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 454 (947)
.+.+++++|+++..+.. + .++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|+.+++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC-C--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34556666666543322 1 24667777777777655555667777778888888887766666677888888888888
Q ss_pred cccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccC
Q 002250 455 NMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIP 510 (947)
Q Consensus 455 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 510 (947)
|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88887777778889999999999999986666667889999999999999998766
No 388
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=3.7e-14 Score=158.79 Aligned_cols=250 Identities=10% Similarity=0.091 Sum_probs=135.0
Q ss_pred cCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCcccccc
Q 002250 173 QIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFL 252 (947)
Q Consensus 173 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l 252 (947)
+...+|.++ +|+.+.|..| ++.+...+|.+. +|+.+.+.+ .++.+.+.+|.++++|+.++|+.|+++.+.......
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 334445543 4555555554 444444455552 455555554 444455555556666666666555555443332224
Q ss_pred CCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeee
Q 002250 253 NQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLV 332 (947)
Q Consensus 253 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l 332 (947)
.+|+.+.|..+ ++.+...+|.++++|+.+.+..| ++.....+|.+ .+|+.+++.
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp----------------------- 256 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP----------------------- 256 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-----------------------
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-----------------------
Confidence 55555555533 44455555666666666666543 33233333433 444444442
Q ss_pred cccccCCcCCccccCCCCccEEEccccccc-----ccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCc
Q 002250 333 LQNNFNGTVPETYANCKSLIRFRVNNNSLS-----GTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANN 407 (947)
Q Consensus 333 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 407 (947)
+++....+.+|.+|++|+.+.+.+|.+. .+.+..|.++++|+.++|. +.++.+....|.++.+|+.+.+..|
T Consensus 257 --~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 257 --NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp --TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred --CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 2222233345566666666666655543 3444556666666666666 3455555666666666777666444
Q ss_pred cccccCCCCCCCCCcceEEEcccCcccCCCCccccccc-ccchhhcccccc
Q 002250 408 RFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLK-KLSSLYLHDNMF 457 (947)
Q Consensus 408 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l 457 (947)
++..-+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 554555666666 677777777766655555566653 566666666654
No 389
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=8.7e-14 Score=156.53 Aligned_cols=314 Identities=13% Similarity=0.055 Sum_probs=170.1
Q ss_pred cCcCchhhhcCCCccEEeCcCccCcCCCC-CcccccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCCh
Q 002250 74 YGTITEGLKSCTRLQVLDLGNNSFSGEVP-DLSMLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPM 152 (947)
Q Consensus 74 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~l~~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 152 (947)
+.+...+|..|++|+.+.|..+ ++.... .|.++++|+.++|..+ +. .++..+|.++++|+.+.+..+ +.... ..
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~-~~ 134 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIG-VE 134 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEEC-TT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeec-ce
Confidence 3344455555555555555432 333222 2555555555555433 22 334456666666666665543 22111 12
Q ss_pred hhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCc
Q 002250 153 EVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNL 232 (947)
Q Consensus 153 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 232 (947)
.+.....+....... +......+|.++++|+.+.+.++. .......|.++.+|+.+.+..| ++.....+|.++..|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 233333222222222 222344577788888888887654 3355667777888888888766 554666778888888
Q ss_pred cEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCccccccccccccc
Q 002250 233 MNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENL 312 (947)
Q Consensus 233 ~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 312 (947)
+.+.+..+... .........+|+.+.+..+ ++.+...+|..+..|+.+.+..+... .....|.....++.+....+.
T Consensus 211 ~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 211 ENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp CBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred ceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence 87777665432 1122333456777777544 33355566777777777777766544 445555555555555443332
Q ss_pred ccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCc
Q 002250 313 LTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDD 392 (947)
Q Consensus 313 l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 392 (947)
+. ..+|..+.+|+.+.+.++ ++.+...+|.++++|+.++|..+ ++.+...+
T Consensus 288 i~---------------------------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 288 VP---------------------------EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp EC---------------------------TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ec---------------------------cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 21 134555666666666543 44344455666666666666432 44444455
Q ss_pred ccccccccEEEccCccccccCCCCCCCCCcceEEEcc
Q 002250 393 IGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLS 429 (947)
Q Consensus 393 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 429 (947)
|.++.+|+.+.+..| ++..-..+|.++++|+.+++.
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 555555555555544 443344455555555555554
No 390
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=4.1e-14 Score=158.41 Aligned_cols=262 Identities=10% Similarity=0.094 Sum_probs=128.1
Q ss_pred CCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCc-cccccCCCCEEEccCccCcccCCCCccCCCcCcEEE
Q 002250 205 LNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLS-ELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELS 283 (947)
Q Consensus 205 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 283 (947)
...++.+.+.+ .++.+...+|.++ +|+.+.+..| ++.+.. .|.. .+|+.+.+.. .++.+.+.+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35566666654 3444555666664 5666666554 333222 2333 2455555553 44444455555555555555
Q ss_pred ccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccc
Q 002250 284 LYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSG 363 (947)
Q Consensus 284 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 363 (947)
|.+|+++.....+|. ..+|+.+.+..+ ++ .....+|.++++|+.+.+.+| ++
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~------------------------~I~~~aF~~~~~L~~l~l~~~-l~- 238 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LK------------------------EIGSQAFLKTSQLKTIEIPEN-VS- 238 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CC------------------------EECTTTTTTCTTCCCEECCTT-CC-
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hh------------------------eehhhHhhCCCCCCEEecCCC-cc-
Confidence 555555522222232 234444433321 21 122234444445555544432 22
Q ss_pred cCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCccc-----CCCC
Q 002250 364 TIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFS-----GQIP 438 (947)
Q Consensus 364 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p 438 (947)
.+....|.+ .+|+.+.+ .+.++...+.+|.++++|+.+++.+|.+. ...+
T Consensus 239 -----------------------~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~ 293 (401)
T 4fdw_A 239 -----------------------TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP 293 (401)
T ss_dssp -----------------------EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT
T ss_pred -----------------------Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH
Confidence 223333333 33444444 22233233444445555555555444432 2334
Q ss_pred cccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCCccCCccCCccc-c-c
Q 002250 439 LDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-Y-P 516 (947)
Q Consensus 439 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~-~ 516 (947)
..|.++++|+.++|. |.++.+....|.+|++|+.++|..| ++...+.+|.++ +|+.|++++|.+....+..+. + .
T Consensus 294 ~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~ 370 (401)
T 4fdw_A 294 YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPD 370 (401)
T ss_dssp TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCT
T ss_pred HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCC
Confidence 455566666666666 3355455566666666666666444 554555666666 677777776666544444332 2 2
Q ss_pred ccceeeCCCCc
Q 002250 517 KLSLLDLSNNQ 527 (947)
Q Consensus 517 ~L~~L~ls~N~ 527 (947)
.+..|.+..|.
T Consensus 371 ~l~~l~vp~~~ 381 (401)
T 4fdw_A 371 DITVIRVPAES 381 (401)
T ss_dssp TCCEEEECGGG
T ss_pred CccEEEeCHHH
Confidence 45555554443
No 391
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=9.3e-14 Score=156.30 Aligned_cols=313 Identities=11% Similarity=0.058 Sum_probs=131.3
Q ss_pred cCcccccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCcccc
Q 002250 124 FPWKSLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIV 203 (947)
Q Consensus 124 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 203 (947)
++..+|.++++|+.+.|..+ ++.++ ..+|.++++|+.+++.++ ++.+....|.++++|+.+.+..+ +......+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIG-EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEEC-TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcc-hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 34467777777777777543 43322 233445555555555433 33333444555555555444433 2223333443
Q ss_pred CCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEE
Q 002250 204 KLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELS 283 (947)
Q Consensus 204 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 283 (947)
+...+...... .+......+|.++ .+|+.+.+.++... +...+|.++.+|+.+.
T Consensus 138 ~~~~~~~~~~~--~~~~i~~~aF~~c-----------------------~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 138 GCDFKEITIPE--GVTVIGDEAFATC-----------------------ESLEYVSLPDSMET-LHNGLFSGCGKLKSIK 191 (394)
T ss_dssp TCCCSEEECCT--TCCEECTTTTTTC-----------------------TTCCEEECCTTCCE-ECTTTTTTCTTCCBCC
T ss_pred cccccccccCc--cccccchhhhccc-----------------------CCCcEEecCCccce-eccccccCCCCceEEE
Confidence 33322211111 1111222334444 44444444433222 3444555555555555
Q ss_pred ccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccc
Q 002250 284 LYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSG 363 (947)
Q Consensus 284 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 363 (947)
+..| ++.....+|.+...|+.+.+..+... +.........++.+.+. +........+|.++..|+.+.+..+...
T Consensus 192 l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip-~~~~~i~~~~f~~~~~l~~~~~~~~~~~- 266 (394)
T 4fs7_A 192 LPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIP-DSFTELGKSVFYGCTDLESISIQNNKLR- 266 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEEC-TTCCEECSSTTTTCSSCCEEEECCTTCE-
T ss_pred cCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEEC-CCceecccccccccccceeEEcCCCcce-
Confidence 5444 33233444555555555554443321 11111122223333221 1112222334555555555555554333
Q ss_pred cCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCccccc
Q 002250 364 TIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGK 443 (947)
Q Consensus 364 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 443 (947)
.....|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++..-..+|.++++|+.++|..+ ++..-..+|.+
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 34444555555555554443321 233444445555544433 33233334444444444444322 33222333444
Q ss_pred ccccchhhccccccCCCCCcccccccccceeecc
Q 002250 444 LKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFA 477 (947)
Q Consensus 444 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 477 (947)
+++|+.+++..| ++.+-..+|.+|.+|+.+++.
T Consensus 342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 444444444333 332333344444444444443
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1e-14 Score=144.03 Aligned_cols=105 Identities=21% Similarity=0.194 Sum_probs=46.5
Q ss_pred CCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCc--cccccCCCCEEEc
Q 002250 183 QLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLS--ELRFLNQLSSLHL 260 (947)
Q Consensus 183 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~l~~l~~L~~L~L 260 (947)
+|++|+|++|+|++. ..+..+++|++|+|++|.|++..+..|..+++|++|+|++|+++..+. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 444444444444322 334444444444444444443322333444444444444444433332 3444445555555
Q ss_pred cCccCcccCCCC----ccCCCcCcEEEccCcccc
Q 002250 261 FENQFSGEIPEE----FGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 261 ~~N~i~~~~~~~----~~~l~~L~~L~L~~N~l~ 290 (947)
++|.++ ..|.. +..+++|+.|++++|.+.
T Consensus 121 ~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 121 LRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 555554 23332 445555555555555443
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1e-16 Score=161.88 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=89.9
Q ss_pred cCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCC
Q 002250 177 GIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLS 256 (947)
Q Consensus 177 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~ 256 (947)
.+..+++|++|+|++|++++ +| .+.++++|++|+|++|.++ .+|..+..+++|++|+|++|++++.+ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 66667777777777777764 45 6667777777777777776 45656666677777777777776643 566677777
Q ss_pred EEEccCccCcccCC-CCccCCCcCcEEEccCccccccCCcC----------ccCccccccccccccccc
Q 002250 257 SLHLFENQFSGEIP-EEFGEFKHLTELSLYTNRLTGTLPQK----------LGSWADFNYVDVSENLLT 314 (947)
Q Consensus 257 ~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~ 314 (947)
.|+|++|++++..+ ..+..+++|++|++++|++++..|.. +..+++|+.|| +|.++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77777777764322 35677777888888888777655543 66777777776 56555
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.6e-16 Score=158.92 Aligned_cols=136 Identities=23% Similarity=0.250 Sum_probs=83.4
Q ss_pred ccCCcccceeeccCccccCcCch------hhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCccccc
Q 002250 57 ICGLQALQKINLGTNFLYGTITE------GLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPWKSLE 130 (947)
Q Consensus 57 ~~~l~~L~~L~L~~n~i~~~~~~------~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~l~ 130 (947)
+.....++.++++.+.+.+..|. .+..+++|++|+|++|++++.+ .+..+++|++|+|++|.++ .+| ..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~-~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIE-NLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCS-SHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-ccc-chhh
Confidence 44556666777777777666665 7788888888888888877643 6666777777777777766 334 3455
Q ss_pred ccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCC-ccCCCCCCCCEEECcCccccccc
Q 002250 131 NLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIP-EGIGNLTQLQNLELSDNELFGEI 198 (947)
Q Consensus 131 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~ 198 (947)
.+++|++|+|++|+++. +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus 91 ~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred cCCcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 55666666666666654 22 35555566666666665553221 24555555555555555554443
No 395
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.7e-14 Score=142.53 Aligned_cols=133 Identities=17% Similarity=0.107 Sum_probs=82.3
Q ss_pred cccccCCCceeeCCCCCCCCCCCChhhcccc-cCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCC
Q 002250 128 SLENLTNLEFLSLGDNPFDPSPFPMEVLKLE-KLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLN 206 (947)
Q Consensus 128 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 206 (947)
.+.++++|++|+|++|.++.. +. +..+. +|++|++++|.+++. ..+..+++|++|+|++|+|++..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i--~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI--EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC--CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCchh--HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 345555666666666665532 32 33333 666666666666644 4566667777777777777654444446677
Q ss_pred CCcEEEeecccccccCCc--cCCCCCCccEEeccCCCCCCCCcc----ccccCCCCEEEccCccCc
Q 002250 207 KLWQLELYNNSLSGRLPV--GFSNLTNLMNFDVSQNRLEGDLSE----LRFLNQLSSLHLFENQFS 266 (947)
Q Consensus 207 ~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----l~~l~~L~~L~L~~N~i~ 266 (947)
+|++|+|++|+|+ .+|. .+..+++|++|++++|.++..+.. +..+++|+.|++++|.+.
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777775 3343 566677777777777777655543 666777777777777654
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=1.4e-13 Score=134.85 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=67.7
Q ss_pred cEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCc
Q 002250 400 ALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQN 479 (947)
Q Consensus 400 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 479 (947)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45556666655 3454442 55666666666666555666666666666666666666555555666666777777777
Q ss_pred eeeeecCCCCCccCcCcEEECCCCccCCccC
Q 002250 480 SLSGKIPDSLGSLPSLNSLNLSNNKFSGEIP 510 (947)
Q Consensus 480 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 510 (947)
+|++..|..|..+++|+.|+|++|+++...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 7665555556666777777777776665443
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=2.9e-13 Score=133.02 Aligned_cols=106 Identities=24% Similarity=0.308 Sum_probs=65.2
Q ss_pred cEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCc
Q 002250 400 ALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQN 479 (947)
Q Consensus 400 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 479 (947)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555554 4554443 55666666666666555666666666666666666666555555566666666666666
Q ss_pred eeeeecCCCCCccCcCcEEECCCCccCCc
Q 002250 480 SLSGKIPDSLGSLPSLNSLNLSNNKFSGE 508 (947)
Q Consensus 480 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 508 (947)
+|++..+..|..+++|+.|+|++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 66654444566666677777776666644
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=7e-13 Score=129.77 Aligned_cols=107 Identities=25% Similarity=0.261 Sum_probs=60.9
Q ss_pred ceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeec
Q 002250 136 EFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYN 215 (947)
Q Consensus 136 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 215 (947)
+.|++++|.++.. |..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 12 ~~l~~s~n~l~~i--p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASV--PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSC--CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc--CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4455555555432 2222 24555566666666655556666666666666666666655555556666666666666
Q ss_pred ccccccCCccCCCCCCccEEeccCCCCCCCC
Q 002250 216 NSLSGRLPVGFSNLTNLMNFDVSQNRLEGDL 246 (947)
Q Consensus 216 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 246 (947)
|+|++..+..|..+++|++|+|++|.+....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 6666555555666666666666666555443
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.2e-12 Score=128.54 Aligned_cols=107 Identities=23% Similarity=0.273 Sum_probs=59.1
Q ss_pred ceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeec
Q 002250 136 EFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYN 215 (947)
Q Consensus 136 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 215 (947)
+.+++++|.++. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 344555555433 222221 4555555555555555555666666666666666666554444455666666666666
Q ss_pred ccccccCCccCCCCCCccEEeccCCCCCCCC
Q 002250 216 NSLSGRLPVGFSNLTNLMNFDVSQNRLEGDL 246 (947)
Q Consensus 216 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 246 (947)
|+|++..+..|..+++|++|+|++|.+....
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 6666444444566666666666666555443
No 400
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=2e-14 Score=159.42 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=60.4
Q ss_pred cccCcEEEccCccccccCCccC-----CCCCCCCEEECcCcccccc----cCccccCCCCCcEEEeecccccccC----C
Q 002250 157 LEKLYWLYLTNCSVTGQIPEGI-----GNLTQLQNLELSDNELFGE----IPAGIVKLNKLWQLELYNNSLSGRL----P 223 (947)
Q Consensus 157 l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~ 223 (947)
+++|+.|+|++|.++......+ ...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++.. +
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 3344444444444443222222 2345666666666666432 2233355666666666666665422 3
Q ss_pred ccCCCCCCccEEeccCCCCCCC-----CccccccCCCCEEEccCccCcccCCCCc
Q 002250 224 VGFSNLTNLMNFDVSQNRLEGD-----LSELRFLNQLSSLHLFENQFSGEIPEEF 273 (947)
Q Consensus 224 ~~~~~l~~L~~L~Ls~N~l~~~-----~~~l~~l~~L~~L~L~~N~i~~~~~~~~ 273 (947)
..+...++|++|+|++|.|+.. ...+...++|++|+|++|.|+......+
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3445556666666666666531 1223445666666666666654433333
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=4.9e-11 Score=134.02 Aligned_cols=301 Identities=12% Similarity=0.124 Sum_probs=125.5
Q ss_pred cCcEEEccCccccccCCccCCCCCCCCEEECcCcc---cccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEE
Q 002250 159 KLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNE---LFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNF 235 (947)
Q Consensus 159 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 235 (947)
.|+.+.+-.+ ++.+...+|.++++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3555555432 444445556666666666655542 44344445555555555554433 333444455555555555
Q ss_pred eccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccC
Q 002250 236 DVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTG 315 (947)
Q Consensus 236 ~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 315 (947)
.+..+.-.-....+..+.+|+.+.+..+ ++.+...+|.. ..|+.+.+..+-.. ....+|.....+.......+...
T Consensus 143 ~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~- 218 (394)
T 4gt6_A 143 TIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP- 218 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC-
T ss_pred cccceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccc-
Confidence 5543322111223444555555555443 22233344433 34555555443322 33344444444444443333222
Q ss_pred CCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccc
Q 002250 316 PIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGN 395 (947)
Q Consensus 316 ~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 395 (947)
.+...+..... ........+.....+..+.+. +.++......|.++.+|+.+.+..+... .....|.+
T Consensus 219 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 219 AIDNVLYEKSA----------NGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp BSSSCEEEECT----------TSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred cccceeecccc----------cccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCccccc
Confidence 00000000000 000000001112222333322 1222233344555555555555433222 33344555
Q ss_pred cccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceee
Q 002250 396 AKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDIN 475 (947)
Q Consensus 396 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 475 (947)
+..|+.+.+. +.++.....+|.++.+|+.++|..+ ++..-..+|.++.+|+.+.|..+ ++.+-..+|.+|++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 5555555553 2333233344555555555555433 33223334444444444444332 3333334444445555554
Q ss_pred ccCce
Q 002250 476 FAQNS 480 (947)
Q Consensus 476 Ls~N~ 480 (947)
+.+|.
T Consensus 364 ~~~~~ 368 (394)
T 4gt6_A 364 YSGSR 368 (394)
T ss_dssp ESSCH
T ss_pred ECCce
Confidence 44443
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=2.6e-14 Score=158.40 Aligned_cols=183 Identities=19% Similarity=0.110 Sum_probs=106.0
Q ss_pred CCCccEEeCcCccCcCCCCC-c----c-cccccceeecCCCCccCccCcccccccCCCceeeCCCCCCCCCCCCh---hh
Q 002250 84 CTRLQVLDLGNNSFSGEVPD-L----S-MLHELSFLNLNSSGISGKFPWKSLENLTNLEFLSLGDNPFDPSPFPM---EV 154 (947)
Q Consensus 84 l~~L~~L~Ls~n~i~~~~~~-l----~-~l~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~---~~ 154 (947)
+++|++|+|++|.|+..... + . ..++|++|+|++|.+++.........+++|++|+|++|.++...... .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35666777777766543221 1 1 22567777777777654322122334566777777777765432111 11
Q ss_pred -cccccCcEEEccCcccccc----CCccCCCCCCCCEEECcCccccccc----CccccCCCCCcEEEeeccccccc----
Q 002250 155 -LKLEKLYWLYLTNCSVTGQ----IPEGIGNLTQLQNLELSDNELFGEI----PAGIVKLNKLWQLELYNNSLSGR---- 221 (947)
Q Consensus 155 -~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~---- 221 (947)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++.. +..+...++|++|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 1346677888888877642 3444566788888888888876433 45566777888888888888753
Q ss_pred CCccCCCCCCccEEeccCCCCCCCCc-cc---cccCC--CCEEE--ccCccCc
Q 002250 222 LPVGFSNLTNLMNFDVSQNRLEGDLS-EL---RFLNQ--LSSLH--LFENQFS 266 (947)
Q Consensus 222 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~l---~~l~~--L~~L~--L~~N~i~ 266 (947)
++..+...++|++|+|++|.|+.... .+ ..... |+.+. +..|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 23344556888888888888864211 12 22222 66666 6666665
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=4.4e-11 Score=134.35 Aligned_cols=333 Identities=11% Similarity=0.080 Sum_probs=231.2
Q ss_pred ccCcccccccC-CCceeeCCCCCCCCCCCChhhcccccCcEEEccCcc---ccccCCccCCCCCCCCEEECcCccccccc
Q 002250 123 KFPWKSLENLT-NLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCS---VTGQIPEGIGNLTQLQNLELSDNELFGEI 198 (947)
Q Consensus 123 ~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 198 (947)
.++..+|.++. .|+.+.+..+ ++.++ ..+|.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig-~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIG-SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEEC-TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEh-HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 34457888884 6999999765 54443 5578899999999998874 66666788999999999988766 55566
Q ss_pred CccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCc-cccccCCCCEEEccCccCcccCCCCccCCC
Q 002250 199 PAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLS-ELRFLNQLSSLHLFENQFSGEIPEEFGEFK 277 (947)
Q Consensus 199 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 277 (947)
..+|.++.+|+.+.+..+- ......+|..+.+|+.+.+..+ ++.... .+. ..+|+.+.+..+-.. ....+|..+.
T Consensus 130 ~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhhhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcc
Confidence 7789999999999997654 4477788999999999999876 332222 343 467999999876554 7778899999
Q ss_pred cCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecccccCCcCCccccCCCCccEEEcc
Q 002250 278 HLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQNNFNGTVPETYANCKSLIRFRVN 357 (947)
Q Consensus 278 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~n~~~~~~p~~~~~l~~L~~L~L~ 357 (947)
.|+......+... .+...+..........+.. +.....+..+.+ .+.+...-..+|.++..|+.+.+.
T Consensus 206 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 206 ALSTITSDSESYP-AIDNVLYEKSANGDYALIR----------YPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp TCCEEEECCSSSC-BSSSCEEEECTTSCEEEEE----------CCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEECC
T ss_pred ccceecccccccc-cccceeecccccccccccc----------cccccccceEEc-CCcceEcccceeeecccccEEecc
Confidence 9999988777665 2222221111110000000 000011111111 122333445678999999999998
Q ss_pred cccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCCCCCCCCCcceEEEcccCcccCCC
Q 002250 358 NNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELPSKISEASSLVSIQLSLNQFSGQI 437 (947)
Q Consensus 358 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 437 (947)
++..+ .....|.++++|+.+.+. +.++.+....|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++..-
T Consensus 274 ~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 274 DSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP 349 (394)
T ss_dssp TTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred cccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence 76554 667788899999999996 5666677788999999999999865 66566778999999999999765 66456
Q ss_pred CcccccccccchhhccccccCCCCCcccccccccceeeccCcee
Q 002250 438 PLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSL 481 (947)
Q Consensus 438 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 481 (947)
..+|.++++|+.+++.+|.... ..+..+.+|+.+.+..|.+
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6789999999999999886542 4566777888887776654
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.1e-11 Score=136.91 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=72.1
Q ss_pred EEEccCc-cccccCCCCCCCCCcceEEEccc-CcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccC
Q 002250 401 LLLLANN-RFSGELPSKISEASSLVSIQLSL-NQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQ 478 (947)
Q Consensus 401 ~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 478 (947)
.++++++ +|+ .+|. +..+++|+.|+|++ |+|++..+..|+++++|+.|+|++|+|++..|..|+.+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566776 676 4666 77777777777775 777766666677777777777777777777777777777777777777
Q ss_pred ceeeeecCCCCCccCcCcEEECCCCccCC
Q 002250 479 NSLSGKIPDSLGSLPSLNSLNLSNNKFSG 507 (947)
Q Consensus 479 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 507 (947)
|+|++..|..|..++ |+.|+|++|+|..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777755455555444 7777777777764
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=1.7e-11 Score=135.31 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=59.6
Q ss_pred EEcccC-cccCCCCcccccccccchhhccc-cccCCCCCcccccccccceeeccCceeeeecCCCCCccCcCcEEECCCC
Q 002250 426 IQLSLN-QFSGQIPLDIGKLKKLSSLYLHD-NMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPSLNSLNLSNN 503 (947)
Q Consensus 426 L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 503 (947)
++++++ +|+ .+|. +..+++|+.|+|++ |+|++..+..|+.+++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3555 55566666666664 6666555555666666666666666666555555666666666666666
Q ss_pred ccCCccCCcccccccceeeCCCCcCCC
Q 002250 504 KFSGEIPISLTYPKLSLLDLSNNQLAG 530 (947)
Q Consensus 504 ~l~~~~p~~~~~~~L~~L~ls~N~l~~ 530 (947)
+|++.++..+....|+.|+|++|+|..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 666555544443336666666666554
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.16 E-value=9.7e-11 Score=123.67 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=111.9
Q ss_pred HHhhccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-cccc
Q 002250 626 EIIDAVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVNV 704 (947)
Q Consensus 626 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~ni 704 (947)
...+.|++....|.|+++.||++... ++.+++|+..... ......+.+|+++++.+. +..+
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~-----------------~~~~~~~~~E~~~l~~l~~~~~v 72 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRY-----------------KGTTYDVEREKDMMLWLEGKLPV 72 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGG-----------------TTSTTCHHHHHHHHHHHTTTSCC
T ss_pred HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCccc-----------------CCCHHHHHHHHHHHHHHhcCCCC
Confidence 44567888888898999999999865 6899999873210 012345889999999994 6778
Q ss_pred ceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcC---------------------
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHG--------------------- 763 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~--------------------- 763 (947)
.++++++...+..|+||||++|.++.+.+... .....++.+++++++.||.-
T Consensus 73 P~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~~-------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~ 145 (263)
T 3tm0_A 73 PKVLHFERHDGWSNLLMSEADGVLCSEEYEDE-------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYL 145 (263)
T ss_dssp CCEEEEEEETTEEEEEEECCSSEEHHHHCCTT-------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHH
T ss_pred CeEEEEEecCCceEEEEEecCCeehhhccCCc-------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHH
Confidence 89999999888899999999999988764211 11235778889999999951
Q ss_pred -----------------------------------CCCCeEeccCCCCCeEecCCCCeEEeccccce
Q 002250 764 -----------------------------------FDRPVIHRDVKSSNILLDLEWKPRIADFGLAK 795 (947)
Q Consensus 764 -----------------------------------~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 795 (947)
....++|+|++|.||+++++..+.|+||+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 146 LNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp HHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred HhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01458999999999999876556799999875
No 407
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=9.9e-09 Score=114.51 Aligned_cols=127 Identities=7% Similarity=0.009 Sum_probs=70.9
Q ss_pred ccccCcEEEccCccccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEE
Q 002250 156 KLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNF 235 (947)
Q Consensus 156 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 235 (947)
...+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.....+|... +|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence 334455554432 345455567777888888887654 555556667665 5777766543 444555566553 67777
Q ss_pred eccCCCCCCCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCccc
Q 002250 236 DVSQNRLEGDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRL 289 (947)
Q Consensus 236 ~Ls~N~l~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 289 (947)
.+..+-..-....+.. .+|+.+.+..+ ++.+....|..+..++.+.+..+..
T Consensus 119 ~lp~~~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~ 170 (379)
T 4h09_A 119 EFPGATTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNK 170 (379)
T ss_dssp ECCTTCCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCS
T ss_pred cCCCcccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccc
Confidence 7765422211112222 34555555443 3335556666677777776665543
No 408
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.06 E-value=3.3e-10 Score=119.46 Aligned_cols=137 Identities=18% Similarity=0.122 Sum_probs=99.3
Q ss_pred ccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc--cceE
Q 002250 630 AVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN--VVKL 707 (947)
Q Consensus 630 ~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l 707 (947)
.+.+....+.|..+.||++...+|+.+++|+.... ....+.+|+++++.+.+.+ +.++
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~--------------------~~~~~~~E~~~l~~l~~~~~~vP~~ 80 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG--------------------ALNELQDEAARLSWLATTGVPCAAV 80 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC--------------------TTSCHHHHHHHHHHHHTTTCCBCCE
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc--------------------cchhhhHHHHHHHHHHhCCCCCCeE
Confidence 34433333466679999998877889999986311 1245788999999996544 5568
Q ss_pred EEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCC-----------------------
Q 002250 708 YCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGF----------------------- 764 (947)
Q Consensus 708 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~----------------------- 764 (947)
+++...++..++||||++|.++. ... .+ ...++.++++.+..||...
T Consensus 81 ~~~~~~~~~~~~v~e~i~G~~l~--~~~-----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (264)
T 1nd4_A 81 LDVVTEAGRDWLLLGEVPGQDLL--SSH-----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEA 150 (264)
T ss_dssp EEEEECSSCEEEEEECCSSEETT--TSC-----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHT
T ss_pred EEeccCCCCCEEEEEecCCcccC--cCc-----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhc
Confidence 99888888889999999998884 221 11 1246667778888888421
Q ss_pred --------------------------------CCCeEeccCCCCCeEecCCCCeEEecccccee
Q 002250 765 --------------------------------DRPVIHRDVKSSNILLDLEWKPRIADFGLAKI 796 (947)
Q Consensus 765 --------------------------------~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 796 (947)
...++|+|++|.||+++++..+.|+|||.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 151 GLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp TCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred CCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11299999999999998776677999998753
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=7.8e-09 Score=115.37 Aligned_cols=303 Identities=11% Similarity=0.074 Sum_probs=186.6
Q ss_pred ccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccCCCCCCCCc-cccccCC
Q 002250 176 EGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQNRLEGDLS-ELRFLNQ 254 (947)
Q Consensus 176 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~l~~l~~ 254 (947)
+++....+|+.+.+... ++.+...+|.++.+|+.+.|..+ ++.+...+|.++ +|+.+.+..+ ++.... .+.. .+
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 35666778899888754 66677788999999999999754 776777888887 6888877654 333222 2333 47
Q ss_pred CCEEEccCccCcccCCCCccCCCcCcEEEccCccccccCCcCccCcccccccccccccccCCCCCCcccCCccceeeecc
Q 002250 255 LSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLTGTLPQKLGSWADFNYVDVSENLLTGPIPPDMCKTGAMTDLLVLQ 334 (947)
Q Consensus 255 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~l~~L~l~~ 334 (947)
|+.+.+..+-.. ....+|.+. +|+.+.+..+ ++......+.....++.+.+..+.......... .
T Consensus 115 L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~------------~ 179 (379)
T 4h09_A 115 LDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV------------L 179 (379)
T ss_dssp CSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE------------E
T ss_pred cccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce------------e
Confidence 888888766433 555566665 5777666544 333555667777777776665544321100000 0
Q ss_pred cccCCcCCccccCCCCccEEEcccccccccCCCCCCCCCCcceeccccCCcCCCCCCcccccccccEEEccCccccccCC
Q 002250 335 NNFNGTVPETYANCKSLIRFRVNNNSLSGTIPPGIWSLPNLSIIDLSTNQFEGPVTDDIGNAKSLALLLLANNRFSGELP 414 (947)
Q Consensus 335 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 414 (947)
.+........+.....+..+.+..+.-. .....+....+|+.+.+..+ +.......|.+...|+.+.+..+ ++..-.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 180 YNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp EETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred cccccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 0011122233444555555555443322 44455566667777766543 33344556667777777777655 444555
Q ss_pred CCCCCCCcceEEEcccCcccCCCCcccccccccchhhccccccCCCCCcccccccccceeeccCceeeeecCCCCCccCc
Q 002250 415 SKISEASSLVSIQLSLNQFSGQIPLDIGKLKKLSSLYLHDNMFSGPLPYSIGSCVSLTDINFAQNSLSGKIPDSLGSLPS 494 (947)
Q Consensus 415 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 494 (947)
..|.++.+|+.+.+..+ ++......|.++++|+.+.+.++.++.+....|.+|.+|+.++|..+ ++..-..+|.++++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 66777777777777544 44344456777777777777777776666677777777777777654 55455667777777
Q ss_pred CcEEECCCC
Q 002250 495 LNSLNLSNN 503 (947)
Q Consensus 495 L~~L~Ls~N 503 (947)
|+.+.+..+
T Consensus 335 L~~i~ip~~ 343 (379)
T 4h09_A 335 LSTISYPKS 343 (379)
T ss_dssp CCCCCCCTT
T ss_pred CCEEEECCc
Confidence 777776544
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=9.1e-11 Score=128.72 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=90.5
Q ss_pred cccCCcccceeeccCccc---------cCcCchhhhcCCCccEEeCcCccCcCCCCCcccccccceeecCCCCccCccCc
Q 002250 56 SICGLQALQKINLGTNFL---------YGTITEGLKSCTRLQVLDLGNNSFSGEVPDLSMLHELSFLNLNSSGISGKFPW 126 (947)
Q Consensus 56 ~~~~l~~L~~L~L~~n~i---------~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 126 (947)
++..+++|+.|.+.++.. .+.+...+..+++|+.|+|++|.-... +.+ .+++|++|+|..|.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l-~~~-~~~~L~~L~L~~~~l~~~~l- 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI-GKK-PRPNLKSLEIISGGLPDSVV- 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC-CSC-BCTTCSEEEEECSBCCHHHH-
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee-ccc-cCCCCcEEEEecCCCChHHH-
Confidence 355667777777755432 123445566677777777776621111 223 25667777776666543211
Q ss_pred cccc--ccCCCceeeCCCC--CCCCCCCChhhcccccCcEEEccCccccccCCccC--CCCCCCCEEECcCcccccccCc
Q 002250 127 KSLE--NLTNLEFLSLGDN--PFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGI--GNLTQLQNLELSDNELFGEIPA 200 (947)
Q Consensus 127 ~~l~--~l~~L~~L~Ls~n--~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~ 200 (947)
..+. .+++|++|+|+.+ ...... .+. .+...+ ..+++|++|+|++|.+.+..+.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~-------------------~~~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDG-------------------DMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCS-------------------CGG-GTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred HHHHHccCCCCcEEEEeccccccccch-------------------hHH-HHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 2222 5666666666431 111000 000 000111 2356666666666665533332
Q ss_pred ccc---CCCCCcEEEeeccccccc----CCccCCCCCCccEEeccCCCCCCC-Cccccc-cCCCCEEEccCcc
Q 002250 201 GIV---KLNKLWQLELYNNSLSGR----LPVGFSNLTNLMNFDVSQNRLEGD-LSELRF-LNQLSSLHLFENQ 264 (947)
Q Consensus 201 ~l~---~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~-~~~l~~-l~~L~~L~L~~N~ 264 (947)
.+. .+++|++|+|+.|.|++. ++..+..+++|+.|+|++|.++.. ...+.. + ...++++.++
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 332 345666666666666543 222234456677777776665421 111221 1 3456676665
No 411
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.93 E-value=2.2e-11 Score=126.45 Aligned_cols=80 Identities=24% Similarity=0.280 Sum_probs=44.9
Q ss_pred ccCCCceeeCCCCCCCCCC-CChhhcccccCcEEEccCccccccCCccCCCCC--CCCEEECcCcccccccC-------c
Q 002250 131 NLTNLEFLSLGDNPFDPSP-FPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLT--QLQNLELSDNELFGEIP-------A 200 (947)
Q Consensus 131 ~l~~L~~L~Ls~n~i~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~~-------~ 200 (947)
++++|+.|+|++|.|.... ++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4555555555555554421 233444566666666666666543 2233333 77777777777765444 2
Q ss_pred cccCCCCCcEEE
Q 002250 201 GIVKLNKLWQLE 212 (947)
Q Consensus 201 ~l~~l~~L~~L~ 212 (947)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355677777665
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=3.6e-10 Score=124.01 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=62.9
Q ss_pred cccccCCCceeeCCCCCCCCCCCChhhcccccCcEEEccCccccccCCccCC--CCCCCCEEECcC--cccccc-----c
Q 002250 128 SLENLTNLEFLSLGDNPFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIG--NLTQLQNLELSD--NELFGE-----I 198 (947)
Q Consensus 128 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~-----~ 198 (947)
.+..+++|+.|+|++|.- ..++. + .+++|+.|+|..|.++......+. .+++|++|+|+. |...+. +
T Consensus 167 ll~~~P~L~~L~L~g~~~--l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNN--LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBT--CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHhcCCCCcEEEEeCCCC--ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 445566777777766621 11222 2 256666666666665533222332 566677776642 221111 0
Q ss_pred Cccc--cCCCCCcEEEeecccccccCCccC---CCCCCccEEeccCCCCCCC-----CccccccCCCCEEEccCccCc
Q 002250 199 PAGI--VKLNKLWQLELYNNSLSGRLPVGF---SNLTNLMNFDVSQNRLEGD-----LSELRFLNQLSSLHLFENQFS 266 (947)
Q Consensus 199 ~~~l--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~-----~~~l~~l~~L~~L~L~~N~i~ 266 (947)
...+ ..+++|++|+|++|.+.+..+..+ ..+++|++|+|+.|.+... ...+..+++|+.|+|++|.|+
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 0111 134566666666666653222222 1344555555555554431 122233444555555544444
No 413
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.88 E-value=5.1e-09 Score=115.91 Aligned_cols=143 Identities=19% Similarity=0.258 Sum_probs=105.6
Q ss_pred cccccccCceeEEEEEeCCCcEEEEEEec--CCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc--ccccceEEE
Q 002250 634 ENLIGKGGSGNVYKVVLNSGKELAVKHIW--PSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR--HVNVVKLYC 709 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~~~~vavK~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~ 709 (947)
.+.++.|.++.||++... +..+++|+.. +... ......+.+|+.+++.+. +..+.++++
T Consensus 43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~----------------~~~~~~~~~E~~~l~~L~~~~vpvP~~~~ 105 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKL----------------LPSAHAIEREYRVMDALAGTDVPVAKMYA 105 (359)
T ss_dssp EEECCC-CCSCEEEEECS-SCEEEEECCCC--------------------------CHHHHHHHHHHHTTSSSCCCCEEE
T ss_pred EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCC----------------CCcHHHHHHHHHHHHHhhcCCCCCCcEEE
Confidence 466899999999999876 4678888763 1110 012346788999999996 456889999
Q ss_pred EEecC---CccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCC----------------------
Q 002250 710 SITSE---DSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGF---------------------- 764 (947)
Q Consensus 710 ~~~~~---~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~---------------------- 764 (947)
++.+. +..|+||||++|..+.+... ..++...+..++.++++.|+.||...
T Consensus 106 ~~~~~~~~g~~~~vme~v~G~~l~~~~~----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (359)
T 3dxp_A 106 LCEDESVIGRAFYIMEFVSGRVLWDQSL----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIER 181 (359)
T ss_dssp EECCTTTTSSCEEEEECCCCBCCCCTTC----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHH
T ss_pred ECCCCCccCCeEEEEEecCCeecCCCcc----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHH
Confidence 98776 45899999999987754211 23567778889999999999999520
Q ss_pred ---------------------------------CCCeEeccCCCCCeEecCCCC--eEEeccccceec
Q 002250 765 ---------------------------------DRPVIHRDVKSSNILLDLEWK--PRIADFGLAKIV 797 (947)
Q Consensus 765 ---------------------------------~~~ivH~Dlkp~NIll~~~~~--~kl~DfG~a~~~ 797 (947)
...++|||+++.||+++.++. +.|.||+.+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g 249 (359)
T 3dxp_A 182 WTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG 249 (359)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred HHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence 256999999999999997754 689999998753
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.74 E-value=6.5e-09 Score=112.10 Aligned_cols=187 Identities=19% Similarity=0.154 Sum_probs=119.1
Q ss_pred cccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-ccc--cceEEEE
Q 002250 634 ENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVN--VVKLYCS 710 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~ 710 (947)
.+.++.|....||++ +..+++|+... ......+.+|+++++.+. +.. +.+++..
T Consensus 25 i~~~~~G~~n~v~~v----~~~~vlR~~~~-------------------~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~ 81 (304)
T 3sg8_A 25 IEISGEGNDCIAYEI----NRDFIFKFPKH-------------------SRGSTNLFNEVNILKRIHNKLPLPIPEVVFT 81 (304)
T ss_dssp CCEEEECSSEEEEES----TTSEEEEEESS-------------------HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEE
T ss_pred eEecCCCCcceEEEE----CCEEEEEecCC-------------------cchHHHHHHHHHHHHHHHhcCCCCCCceEee
Confidence 456899999999986 36788997520 012356889999999884 322 4455555
Q ss_pred EecCC---ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcC------------------------
Q 002250 711 ITSED---SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHG------------------------ 763 (947)
Q Consensus 711 ~~~~~---~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~------------------------ 763 (947)
....+ ..|+||||++|.++.+.... .++...+..++.++++.++.||..
T Consensus 82 ~~~~~~~~~~~~vm~~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (304)
T 3sg8_A 82 GMPSETYQMSFAGFTKIKGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKI 157 (304)
T ss_dssp CCCCSSCSCSCEEEECCCCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHH
T ss_pred cCCCCCCCcceEEEcccCCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHH
Confidence 44433 34899999999888653321 245566667777777777777731
Q ss_pred -------------------------------CCCCeEeccCCCCCeEecC--CCCeEEeccccceecccCCCCccee---
Q 002250 764 -------------------------------FDRPVIHRDVKSSNILLDL--EWKPRIADFGLAKIVQTGEAGDLTH--- 807 (947)
Q Consensus 764 -------------------------------~~~~ivH~Dlkp~NIll~~--~~~~kl~DfG~a~~~~~~~~~~~~~--- 807 (947)
....++|+|++|.||++++ ...+.++||+.+.............
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~ 237 (304)
T 3sg8_A 158 KKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDD 237 (304)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTT
T ss_pred HHHhcccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhc
Confidence 1245899999999999998 4567899999987543321000000
Q ss_pred ---------cccccccccC-ccccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 002250 808 ---------VIAGTHGYIA-PEYAYTCKINEKSDVYSFGVVLMELVTGKRPI 849 (947)
Q Consensus 808 ---------~~~gt~~y~a-PE~~~~~~~~~~~Dv~slGv~l~elltg~~p~ 849 (947)
.....+++.. |+.... .....+.|++|.++|++.+|..+|
T Consensus 238 ~~~~~~~~~~~l~~Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 238 EEYGMEFVSKILNHYKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp TSCCHHHHHHHHHHHTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccCHHHHHHHHHHcCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 0000011111 222111 122358999999999999999875
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.44 E-value=5.6e-07 Score=97.52 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=97.6
Q ss_pred ccCCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc----cccc
Q 002250 630 AVKPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH----VNVV 705 (947)
Q Consensus 630 ~~~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h----~niv 705 (947)
.+...+.++.|....||++ ++.+++|+... ......+.+|+++++.+.+ ..+.
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~-------------------~~~~~~~~~E~~~L~~L~~~~~~~~vP 94 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKR-------------------DSVRISQKRELELYRFLENCKLSYQIP 94 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESS-------------------HHHHHHHHHHHHHHHHHTTSCCSSBCC
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCc-------------------HHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 3445677899999999998 67889997521 0113458899999998866 2345
Q ss_pred eEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCC---------------------
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGF--------------------- 764 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~--------------------- 764 (947)
+++++ +..++||||++|.++.+.... .++...+..++.++++.++.||...
T Consensus 95 ~v~~~----~~~~lvme~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~ 166 (320)
T 3r70_A 95 AVVYQ----SDRFNIMKYIKGERITYEQYH----KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQ 166 (320)
T ss_dssp CEEEE----CSSCEEEECCCCBCCCHHHHT----TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHH
T ss_pred eEEec----CCcEEEEeecCCccccccccc----cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHH
Confidence 55555 567899999999888643221 2345555566666666666666311
Q ss_pred ---------------------------------------CCCeEeccCCCCCeEecCCCCeEEeccccceecc
Q 002250 765 ---------------------------------------DRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQ 798 (947)
Q Consensus 765 ---------------------------------------~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~ 798 (947)
...++|+|++|.||+++++..+.++||+.+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~~ 239 (320)
T 3r70_A 167 DKKLLISILEKEQLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGD 239 (320)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEEC
T ss_pred HHHHHHHHHhhcccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccCC
Confidence 2345999999999999986667999999987543
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=3.4e-08 Score=97.61 Aligned_cols=113 Identities=11% Similarity=0.117 Sum_probs=50.1
Q ss_pred CCCCCCCCEEECcCc-ccccc----cCccccCCCCCcEEEeeccccccc----CCccCCCCCCccEEeccCCCCCC----
Q 002250 178 IGNLTQLQNLELSDN-ELFGE----IPAGIVKLNKLWQLELYNNSLSGR----LPVGFSNLTNLMNFDVSQNRLEG---- 244 (947)
Q Consensus 178 ~~~l~~L~~L~Ls~N-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~---- 244 (947)
+...++|++|+|++| .|... +...+...++|++|+|++|.|.+. +...+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344455555555555 44321 122333344455555555554431 11223333445555555555442
Q ss_pred -CCccccccCCCCEEEc--cCccCcccC----CCCccCCCcCcEEEccCcccc
Q 002250 245 -DLSELRFLNQLSSLHL--FENQFSGEI----PEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 245 -~~~~l~~l~~L~~L~L--~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~ 290 (947)
+...+...++|++|+| ++|.|.... ...+...++|++|+|++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1223444445555555 455554322 122333355555555555554
No 417
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.37 E-value=4.4e-08 Score=96.79 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=67.1
Q ss_pred ccccccCCCceeeCCCC-CCCCCCCChhhcccccCcEEEccCccccccCCccCCCCCCCCEEECcCccccccc----Ccc
Q 002250 127 KSLENLTNLEFLSLGDN-PFDPSPFPMEVLKLEKLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNELFGEI----PAG 201 (947)
Q Consensus 127 ~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 201 (947)
..+...++|++|+|++| .+...... .+...+...++|++|+|++|+|.... ...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~---------------------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLK---------------------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHH---------------------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHH---------------------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH
Confidence 34556667777777776 66432111 12233444556666666666654322 233
Q ss_pred ccCCCCCcEEEeeccccccc----CCccCCCCCCccEEec--cCCCCCC-----CCccccccCCCCEEEccCccCc
Q 002250 202 IVKLNKLWQLELYNNSLSGR----LPVGFSNLTNLMNFDV--SQNRLEG-----DLSELRFLNQLSSLHLFENQFS 266 (947)
Q Consensus 202 l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~-----~~~~l~~l~~L~~L~L~~N~i~ 266 (947)
+...++|++|+|++|.|++. +...+...++|++|+| ++|.+.. +...+...++|++|+|++|.|.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34445666666666666542 2344555666777777 6676653 1233555677888888888775
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.5e-08 Score=103.43 Aligned_cols=80 Identities=28% Similarity=0.285 Sum_probs=50.6
Q ss_pred cccccCcEEEccCccccc--cCCccCCCCCCCCEEECcCcccccccCccccCCC--CCcEEEeecccccccCCc------
Q 002250 155 LKLEKLYWLYLTNCSVTG--QIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLN--KLWQLELYNNSLSGRLPV------ 224 (947)
Q Consensus 155 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~------ 224 (947)
.++++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|.+. ..+..+. +|++|+|++|.+.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456778888888888876 3345566777888888888877654 2333333 677777777777654442
Q ss_pred -cCCCCCCccEEe
Q 002250 225 -GFSNLTNLMNFD 236 (947)
Q Consensus 225 -~~~~l~~L~~L~ 236 (947)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 234455555544
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.30 E-value=2.7e-06 Score=90.25 Aligned_cols=139 Identities=21% Similarity=0.179 Sum_probs=92.1
Q ss_pred cccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc---ccceEEEE
Q 002250 634 ENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV---NVVKLYCS 710 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~ 710 (947)
.+.||.|.++.||++...+|+.++||+..... ......|.+|++.++.+.+. .+.+++++
T Consensus 20 ~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~-----------------~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~ 82 (288)
T 3d1u_A 20 VAERGHSHRWHLYRVELADGTPLFVKALPDDA-----------------PALDGLFRAEALGLDWLGRSFGSPVPQVAGW 82 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEECCTTC-----------------CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE
T ss_pred eeeeCCcchhheEEEEeCCCCeEEEEecCCCC-----------------cchhHHHHHHHHHHHHHHhcCCCCcCeEEEe
Confidence 56789999999999999889999999863110 12235689999999999765 57788876
Q ss_pred EecCCccEEEEeccCCCChHH-----------HhhhcCC-------------------ccCCHHHHHH---H--------
Q 002250 711 ITSEDSNLLVYEYLPNGSLWD-----------RLHTCHK-------------------IEMDWVVRYA---I-------- 749 (947)
Q Consensus 711 ~~~~~~~~lv~e~~~~gsL~~-----------~l~~~~~-------------------~~~~~~~~~~---i-------- 749 (947)
. ..++||||++++++.. .+|.... ..-+|...+. +
T Consensus 83 ~----~~~lvme~l~g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~ 158 (288)
T 3d1u_A 83 D----DRTLAMEWVDERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAA 158 (288)
T ss_dssp E----TTEEEEECCCCCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHH
T ss_pred c----CcEEEEEecccCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3 4799999999987531 1232211 0124443221 0
Q ss_pred ---------HHHHHHHHHHHh----cCCCCCeEeccCCCCCeEecCCCCeEEeccccce
Q 002250 750 ---------AVGAAKGLEYLH----HGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAK 795 (947)
Q Consensus 750 ---------~~~ia~~l~yLH----~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 795 (947)
...+-+.++.+. ......++|+|+.+.||+++.+ .+.+.|| .+.
T Consensus 159 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~~-~~~~iD~-~~~ 215 (288)
T 3d1u_A 159 DRGALTPGDVRLVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDD-GAVVIDP-AAH 215 (288)
T ss_dssp HTTSSCHHHHHHHHHHHHTHHHHTCSCCCCEEECSCCSGGGEEEETT-EEEECSC-CCE
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcCCCCCcceECCCCcCcEEEeCC-CeEEEcC-CcC
Confidence 001112222232 1225679999999999999884 5889999 654
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.27 E-value=3.5e-06 Score=88.84 Aligned_cols=135 Identities=22% Similarity=0.199 Sum_probs=94.5
Q ss_pred cccccCce-eEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-ccccceEEEEEe
Q 002250 636 LIGKGGSG-NVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVNVVKLYCSIT 712 (947)
Q Consensus 636 ~iG~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 712 (947)
.+..|..| .||+.... +++.+.+|+-.+ .....+.+|+.+++.+. +--+.++++++.
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~--------------------~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~ 90 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG--------------------SVANDVTDEMVRLNWLTAFMPLPTIKHFIR 90 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET--------------------HHHHHHHHHHHHHHHHTTTSCCCCEEEEEE
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC--------------------CCHhHHHHHHHHHHHhccCCCcCeEEEEEE
Confidence 34455555 69998855 567899997521 12346788999999884 334778899999
Q ss_pred cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcC-----------------------------
Q 002250 713 SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHG----------------------------- 763 (947)
Q Consensus 713 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~----------------------------- 763 (947)
+++..++|||+++|.++.+...... .....+..+++..+..||.-
T Consensus 91 ~~~~~~lvme~l~G~~~~~~~~~~~------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (272)
T 4gkh_A 91 TPDDAWLLTTAIPGKTAFQVLEEYP------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDA 164 (272)
T ss_dssp ETTEEEEEEECCCSEEHHHHHHHCG------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCG
T ss_pred ECCeEEEEEEeeCCccccccccCCH------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhh
Confidence 9999999999999988777654311 11223445555666666621
Q ss_pred --------------------------CCCCeEeccCCCCCeEecCCCCeEEecccccee
Q 002250 764 --------------------------FDRPVIHRDVKSSNILLDLEWKPRIADFGLAKI 796 (947)
Q Consensus 764 --------------------------~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 796 (947)
....++|+|+.+.||++++++.+-|+||+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 165 SDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp GGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred hhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 012379999999999999877777999998753
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.17 E-value=6.4e-06 Score=88.43 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=90.4
Q ss_pred cccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc---ccceEEEE
Q 002250 634 ENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV---NVVKLYCS 710 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~ 710 (947)
.+.++.|....||+. |+.++||+.. .......+.+|+++++.+.+. .+.+++.+
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~-------------------~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~ 80 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK-------------------SQQGADELNKEIQLLPLLVGCVKVNIPQYVYI 80 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES-------------------SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEE
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC-------------------CchHHHHHHHHHHHHHHHHhcCCCCCCCeEee
Confidence 456788999999998 6778888741 011235688999999999652 35677777
Q ss_pred Ee-cCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcC--------------------------
Q 002250 711 IT-SEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHG-------------------------- 763 (947)
Q Consensus 711 ~~-~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~-------------------------- 763 (947)
.. ..+..++||||++|.++.+.... .++...+..++.++++.|+.||.-
T Consensus 81 ~~~~~g~~~~v~e~i~G~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~ 156 (306)
T 3tdw_A 81 GKRSDGNPFVGYRKVQGQILGEDGMA----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAV 156 (306)
T ss_dssp EECTTSCEEEEEECCCSEECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHH
T ss_pred cccCCCceEEEEeccCCeECchhhhh----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHH
Confidence 64 45567899999999887653111 112222333333333333333310
Q ss_pred -------------------------------CCCCeEeccCCCCCeEecC---CCCe-EEeccccceec
Q 002250 764 -------------------------------FDRPVIHRDVKSSNILLDL---EWKP-RIADFGLAKIV 797 (947)
Q Consensus 764 -------------------------------~~~~ivH~Dlkp~NIll~~---~~~~-kl~DfG~a~~~ 797 (947)
....++|+|++|.||+++. ++.+ .|+||+.+...
T Consensus 157 ~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g 225 (306)
T 3tdw_A 157 EDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS 225 (306)
T ss_dssp HHHTGGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred HHhcccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence 2446799999999999997 4554 79999988643
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.06 E-value=1.2e-05 Score=88.46 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=89.9
Q ss_pred cccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc--ccceEEEEE
Q 002250 634 ENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV--NVVKLYCSI 711 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~~ 711 (947)
.+.++.|....+|+.... ++.+++|+.. ....+.+|+.+++.+... .+.++++++
T Consensus 46 i~~l~gG~~n~~y~v~~~-g~~~vlK~~~----------------------~~~~~~~E~~~l~~L~~~gvpvP~vl~~~ 102 (362)
T 3ovc_A 46 LMQLSEGEESRAFSFDVG-GRGYVLRVNS----------------------CADGFYKDRYVYRHFASAALPIPEVLDIG 102 (362)
T ss_dssp EEEEEECSSEEEEEEEET-TEEEEEEEES----------------------CCHHHHHHHHHHHHHCCSSSCCCCEEEEE
T ss_pred EEECCCCCcceEEEEEEC-CcEEEEEeCC----------------------chhhHHHHHHHHHHHHhcCCCCceEEEec
Confidence 456889999999998864 7889999762 112588899999998643 356778777
Q ss_pred ecC-CccEEEEeccCCCChHHH------------------hhhcCCc---------------cCCHHHHH----------
Q 002250 712 TSE-DSNLLVYEYLPNGSLWDR------------------LHTCHKI---------------EMDWVVRY---------- 747 (947)
Q Consensus 712 ~~~-~~~~lv~e~~~~gsL~~~------------------l~~~~~~---------------~~~~~~~~---------- 747 (947)
... +..|+||||++|.++.+. ++..... ...|...+
T Consensus 103 ~~~~g~~~lv~e~l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~ 182 (362)
T 3ovc_A 103 EFSESLTYCISRRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYH 182 (362)
T ss_dssp ESSSSCEEEEEECCCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCC
T ss_pred cCCCCCeEEEEEecCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 764 567999999998655321 1111000 00121110
Q ss_pred -----------HHHHHHHHHHHHHhcCC-CCCeEeccCCCCCeEecCCCCeEEeccccceec
Q 002250 748 -----------AIAVGAAKGLEYLHHGF-DRPVIHRDVKSSNILLDLEWKPRIADFGLAKIV 797 (947)
Q Consensus 748 -----------~i~~~ia~~l~yLH~~~-~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~ 797 (947)
.....+...++++.... ...++|+|+.+.||++++++.+.|+||+.+..-
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 183 WQTVMDDTVSASVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHCCTTTHHHHHHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 11111222223332111 256899999999999987777889999998754
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.94 E-value=2.6e-05 Score=85.81 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=56.4
Q ss_pred cccc-cccCceeEEEEEeC-------CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-c--c
Q 002250 634 ENLI-GKGGSGNVYKVVLN-------SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-H--V 702 (947)
Q Consensus 634 ~~~i-G~G~~g~Vy~~~~~-------~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~ 702 (947)
.+.| +.|....+|+.... +++.+++|+..+... ........+.+|+.+++.+. + -
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~--------------~~~~~~~~~~~E~~~l~~L~~~~~v 90 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAED--------------VPVFPTYRLDHQFEVIRLVGELTDV 90 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGG--------------CCSSSCCCHHHHHHHHHHHHHHCCS
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCc--------------cccCchhHHHHHHHHHHHHhhcCCC
Confidence 3567 88999999998764 267788887521100 00001246788999999885 3 3
Q ss_pred ccceEEEEEecC---CccEEEEeccCCCChH
Q 002250 703 NVVKLYCSITSE---DSNLLVYEYLPNGSLW 730 (947)
Q Consensus 703 niv~l~~~~~~~---~~~~lv~e~~~~gsL~ 730 (947)
.+.++++++.+. +..++||||++|..+.
T Consensus 91 pvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 91 PVPRVRWIETTGDVLGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp CCCCEEEEECSSTTTSSCEEEEECCCCBCCC
T ss_pred CCCcEEEEccCCCccCCceEEEEecCCCChh
Confidence 577888887665 3568999999987654
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=3e-06 Score=81.36 Aligned_cols=83 Identities=11% Similarity=0.156 Sum_probs=46.8
Q ss_pred cCcEEEccCccccccCCccCCCCCCCCEEECcCcc-cccccCccccCC----CCCcEEEeeccc-ccccCCccCCCCCCc
Q 002250 159 KLYWLYLTNCSVTGQIPEGIGNLTQLQNLELSDNE-LFGEIPAGIVKL----NKLWQLELYNNS-LSGRLPVGFSNLTNL 232 (947)
Q Consensus 159 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 232 (947)
+|+.|++++|.|+...-..+..+++|++|+|++|. |+...-..++.+ ++|++|+|++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45556666665554444455666666666666663 554443444443 246666666664 655433445556666
Q ss_pred cEEeccCCC
Q 002250 233 MNFDVSQNR 241 (947)
Q Consensus 233 ~~L~Ls~N~ 241 (947)
++|+|+++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.80 E-value=0.00015 Score=80.87 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=51.3
Q ss_pred cccccccCceeEEEEEeC-CCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc--c-ccceEEE
Q 002250 634 ENLIGKGGSGNVYKVVLN-SGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH--V-NVVKLYC 709 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~-niv~l~~ 709 (947)
.+.+|.|.++.||++... +++.++||...+.... ...........+..|+++++.+.. + .+.+++.
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~----------~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~ 104 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKV----------VGESWPLTIDRARIESSALIRQGEHVPHLVPRVFY 104 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-----------------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcc----------cCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEE
Confidence 456899999999999854 4788999987432110 000001233556789999988742 3 4456665
Q ss_pred EEecCCccEEEEeccCCC
Q 002250 710 SITSEDSNLLVYEYLPNG 727 (947)
Q Consensus 710 ~~~~~~~~~lv~e~~~~g 727 (947)
+ +.+..++||||+++.
T Consensus 105 ~--d~~~~~lvmE~l~g~ 120 (397)
T 2olc_A 105 S--DTEMAVTVMEDLSHL 120 (397)
T ss_dssp E--ETTTTEEEECCCTTS
T ss_pred E--cCCccEEEEEeCCCc
Confidence 4 345568999999764
No 426
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.76 E-value=7.4e-05 Score=81.54 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=28.3
Q ss_pred CCCeEeccCCCCCeEecCCCCeEEeccccce
Q 002250 765 DRPVIHRDVKSSNILLDLEWKPRIADFGLAK 795 (947)
Q Consensus 765 ~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 795 (947)
...++|+|+++.||+++.++.+.++||+.+.
T Consensus 221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 5789999999999999888899999999875
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=1.2e-05 Score=77.03 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=44.2
Q ss_pred CCCCEEECcCcccccccCccccCCCCCcEEEeeccc-ccccCCccCCCCCCccEEeccCCCCCCCCccccccCCCCEEEc
Q 002250 182 TQLQNLELSDNELFGEIPAGIVKLNKLWQLELYNNS-LSGRLPVGFSNLTNLMNFDVSQNRLEGDLSELRFLNQLSSLHL 260 (947)
Q Consensus 182 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~l~~l~~L~~L~L 260 (947)
.+|+.|||+++.|+...-..+.++++|++|+|++|. |++..-..+..+++ ..++|++|+|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-------------------~~~~L~~L~L 121 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN-------------------LQKSMLEMEI 121 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH-------------------HHHHCCEEEE
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc-------------------ccCCCCEEEc
Confidence 356666666666655544555556666666666653 44432223333210 0123555555
Q ss_pred cCcc-CcccCCCCccCCCcCcEEEccCcc
Q 002250 261 FENQ-FSGEIPEEFGEFKHLTELSLYTNR 288 (947)
Q Consensus 261 ~~N~-i~~~~~~~~~~l~~L~~L~L~~N~ 288 (947)
++|. |+...-..+..+++|++|+|+++.
T Consensus 122 s~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp ESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 5543 444333345555666666666653
No 428
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.39 E-value=0.0012 Score=70.45 Aligned_cols=137 Identities=17% Similarity=0.167 Sum_probs=92.5
Q ss_pred cccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc---ccccceEEEE
Q 002250 634 ENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR---HVNVVKLYCS 710 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~ 710 (947)
.+.|+.|....+|+.... ++.++||+..+ .....+.+|++.++.+. ...+.+++++
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~--------------------~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~ 99 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINER--------------------SYRSMFRAEADQLALLAKTNSINVPLVYGI 99 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEG--------------------GGHHHHHHHHHHHHHHHHTTSSBCCCEEEE
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCc--------------------ccHHHHHHHHHHHHHHHhhCCCCcceEEEE
Confidence 456899999999999864 67888997621 12456889999999884 3578899999
Q ss_pred EecCCccEEEEeccCCCChHH-----------HhhhcCC--------------------ccCCHHHHHH---HHH--H--
Q 002250 711 ITSEDSNLLVYEYLPNGSLWD-----------RLHTCHK--------------------IEMDWVVRYA---IAV--G-- 752 (947)
Q Consensus 711 ~~~~~~~~lv~e~~~~gsL~~-----------~l~~~~~--------------------~~~~~~~~~~---i~~--~-- 752 (947)
...++..++||||+++..+.. .++.... ..-+|...+. +.. +
T Consensus 100 ~~~~g~~~lvme~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a 179 (312)
T 3jr1_A 100 GNSQGHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQIC 179 (312)
T ss_dssp EECSSEEEEEEECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHH
T ss_pred eecCCceEEEEEeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 888888999999999876421 2232211 0125654321 111 1
Q ss_pred ------------HH-HHHHHHh-cCCCCCeEeccCCCCCeEecCCCCeEEeccc
Q 002250 753 ------------AA-KGLEYLH-HGFDRPVIHRDVKSSNILLDLEWKPRIADFG 792 (947)
Q Consensus 753 ------------ia-~~l~yLH-~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG 792 (947)
+. .....|. ......++|+|+.+.|++++.++ +.|.|++
T Consensus 180 ~~~g~~~~~~~~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 180 KEKGLIFGNIDLIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHTCCCSCHHHHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHcCCChHHHHHHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 11 1122342 12256799999999999999887 8899974
No 429
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.35 E-value=0.00062 Score=72.11 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCcccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccc---cccceEE
Q 002250 632 KPENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRH---VNVVKLY 708 (947)
Q Consensus 632 ~~~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~l~ 708 (947)
...+.+|.|..+.||+++..||+.|.||+..... ......|.+|++.|+.+.- --+.+++
T Consensus 18 ~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~-----------------~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~ 80 (288)
T 3f7w_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDA-----------------PALDGLFRAEALGLDWLGRSFGSPVPQVA 80 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC-----------------CCCTTHHHHHHHHHHHHTCSTTCCSCCEE
T ss_pred EEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCC-----------------cchhhHHHHHHHHHHHHHhhCCCCcceEE
Confidence 3456789999999999999999999999763211 1223457899999998842 2355666
Q ss_pred EEEecCCccEEEEeccCCCCh
Q 002250 709 CSITSEDSNLLVYEYLPNGSL 729 (947)
Q Consensus 709 ~~~~~~~~~~lv~e~~~~gsL 729 (947)
++. ..++||||++++..
T Consensus 81 ~~~----~~~lv~e~l~~~~~ 97 (288)
T 3f7w_A 81 GWD----DRTLAMEWVDERPP 97 (288)
T ss_dssp EEE----TTEEEEECCCCCCC
T ss_pred ecc----CceEEEEeecccCC
Confidence 542 35899999987653
No 430
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=6.7e-05 Score=73.36 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=21.4
Q ss_pred cCCCCCCCCEEECcCcccccccCccc----cCCCCCcEEEeecccccc
Q 002250 177 GIGNLTQLQNLELSDNELFGEIPAGI----VKLNKLWQLELYNNSLSG 220 (947)
Q Consensus 177 ~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~l~~L~~L~L~~n~l~~ 220 (947)
.+..-+.|+.|+|++|+|.......+ ..-+.|++|+|++|.|.+
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 33444555666666665543322222 233455555555555543
No 431
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=4e-05 Score=74.97 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=62.9
Q ss_pred cCCCCCCCCEEECcCc-ccccc----cCccccCCCCCcEEEeecccccccCCcc----CCCCCCccEEeccCCCCCC---
Q 002250 177 GIGNLTQLQNLELSDN-ELFGE----IPAGIVKLNKLWQLELYNNSLSGRLPVG----FSNLTNLMNFDVSQNRLEG--- 244 (947)
Q Consensus 177 ~~~~l~~L~~L~Ls~N-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~--- 244 (947)
.+.+-+.|++|+|++| +|... +.+.+..-+.|+.|+|++|.|.+....+ +..-+.|++|+|+.|.|..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567888888875 66432 3345555667888888888887533332 3344667777777776653
Q ss_pred --CCccccccCCCCEEEccCc---cCccc----CCCCccCCCcCcEEEccCccc
Q 002250 245 --DLSELRFLNQLSSLHLFEN---QFSGE----IPEEFGEFKHLTELSLYTNRL 289 (947)
Q Consensus 245 --~~~~l~~l~~L~~L~L~~N---~i~~~----~~~~~~~l~~L~~L~L~~N~l 289 (947)
+...+...+.|++|+|++| .+... +.+.+..-+.|++|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1223444555666666544 22211 122333345566666655543
No 432
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.14 E-value=0.0004 Score=63.46 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=35.7
Q ss_pred eeeccCceee-eecCCCCCccCcCcEEECCCCccCCccCCccc-ccccceeeCCCCcCCCCCCCcccccccccccccCCC
Q 002250 473 DINFAQNSLS-GKIPDSLGSLPSLNSLNLSNNKFSGEIPISLT-YPKLSLLDLSNNQLAGPIPEPLNIKAFIDSFTGNPG 550 (947)
Q Consensus 473 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~gN~~ 550 (947)
.++.+++.|+ ..+|..+. ++|+.|+|++|+|+...+..+. +++|+.| .+.+|||
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L----------------------~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTA----------------------HLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEE----------------------ECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEE----------------------EecCCCe
Confidence 4566666664 24444332 2466666666666654444433 3445544 4558899
Q ss_pred CCCCCccc
Q 002250 551 LCSKTDEY 558 (947)
Q Consensus 551 ~c~~~~~~ 558 (947)
.|+|.+.|
T Consensus 68 ~CdC~l~~ 75 (130)
T 3rfe_A 68 RCDCRLVP 75 (130)
T ss_dssp BCSGGGHH
T ss_pred eccCccHH
Confidence 99998766
No 433
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.11 E-value=0.0046 Score=69.30 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=49.1
Q ss_pred CCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcceecccc--cccccCccccccC---CCCCccchHHHHHHH
Q 002250 765 DRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAG--THGYIAPEYAYTC---KINEKSDVYSFGVVL 839 (947)
Q Consensus 765 ~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~Dv~slGv~l 839 (947)
...++|+|++|.||+++.++ ++++||+.+......... . .... ...|++|+..... ......++......+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dl--a-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDI--G-AYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQT 306 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHH--H-HHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHH--H-HHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 67899999999999998876 999999998754332110 0 0011 2346776655321 111234556778888
Q ss_pred HHHHhC
Q 002250 840 MELVTG 845 (947)
Q Consensus 840 ~elltg 845 (947)
|+.+++
T Consensus 307 ~~~y~~ 312 (420)
T 2pyw_A 307 WNLFNK 312 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877765
No 434
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.04 E-value=0.0024 Score=69.13 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=75.2
Q ss_pred ccccccCcee-EEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccc--ccceEEEEE
Q 002250 635 NLIGKGGSGN-VYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHV--NVVKLYCSI 711 (947)
Q Consensus 635 ~~iG~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~~ 711 (947)
+.++.|.... +|+....+|+.+++|...+. ....+..|+.+++.+... .+.+++.+.
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~--------------------~~~~~~~e~~~l~~L~~~g~~vP~v~~~d 83 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPE--------------------EGGDTQPFVDLAQYLRNLDISAPEIYAEE 83 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTT--------------------TTCCSHHHHHHHHHHHHTTCBCCCEEEEE
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCC--------------------CCccccHHHHHHHHHHhCCCCCCceeeec
Confidence 3455554444 67776654677777754211 003455678888777432 355677664
Q ss_pred ecCCccEEEEeccCCCChHHHhhhcCC------------------------ccCCHHHHH--------------------
Q 002250 712 TSEDSNLLVYEYLPNGSLWDRLHTCHK------------------------IEMDWVVRY-------------------- 747 (947)
Q Consensus 712 ~~~~~~~lv~e~~~~gsL~~~l~~~~~------------------------~~~~~~~~~-------------------- 747 (947)
...+ ++|||++.+..+.+++..... ..++.....
T Consensus 84 ~~~g--~ll~e~l~~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (333)
T 3csv_A 84 HARG--LLLIEDLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAE 161 (333)
T ss_dssp TTTT--EEEECCCCSCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCH
T ss_pred CCCC--EEEEeeCCCcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3333 789999977666554432100 011111000
Q ss_pred HHHHHHHHHHHHHh---cCCCCCeEeccCCCCCeEecCC----CCeEEeccccceec
Q 002250 748 AIAVGAAKGLEYLH---HGFDRPVIHRDVKSSNILLDLE----WKPRIADFGLAKIV 797 (947)
Q Consensus 748 ~i~~~ia~~l~yLH---~~~~~~ivH~Dlkp~NIll~~~----~~~kl~DfG~a~~~ 797 (947)
.....+...++.+. ......++|||+.+.||+++.+ +.+.++||+.+...
T Consensus 162 ~~~~~l~~~~~~l~~~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 162 DNRKRFEHRFAQILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred HHHHHHHHHHHHHHHhcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 00001111222221 1124679999999999999875 67899999988754
No 435
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.96 E-value=0.0036 Score=66.62 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=76.4
Q ss_pred cccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc-ceEEEEEe
Q 002250 634 ENLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV-VKLYCSIT 712 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~ 712 (947)
.+.|+.|....+|++ +.+++|+..+.. .......+|+.+++.+....+ .+++++.
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~------------------~~~~~r~~E~~~l~~l~~~g~~P~~~~~~- 78 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGT------------------EEYINRANEAVAAREAAKAGVSPEVLHVD- 78 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC----------------------CCCHHHHHHHHHHHHHTTSSCCEEEEC-
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCc------------------cceeCHHHHHHHHHHHHHcCCCCceEEEE-
Confidence 677889999999998 568888763211 111223568888888753333 4666543
Q ss_pred cCCccEEEEecc-CCCChHHH------------------hhhcCC---ccCCHHH-HHHHHH--------------HHHH
Q 002250 713 SEDSNLLVYEYL-PNGSLWDR------------------LHTCHK---IEMDWVV-RYAIAV--------------GAAK 755 (947)
Q Consensus 713 ~~~~~~lv~e~~-~~gsL~~~------------------l~~~~~---~~~~~~~-~~~i~~--------------~ia~ 755 (947)
++.-++|+||+ ++.++... +|.... ...+... ...... .+..
T Consensus 79 -~~~~~~v~e~i~~g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (301)
T 3dxq_A 79 -PATGVMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVR 157 (301)
T ss_dssp -TTTCCEEEECCTTCEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHH
T ss_pred -CCCCEEEEeecCCCccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHH
Confidence 33457899999 65444210 111110 0011111 000000 0011
Q ss_pred HH----HHHh-cCCCCCeEeccCCCCCeEecCCCCeEEeccccceec
Q 002250 756 GL----EYLH-HGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIV 797 (947)
Q Consensus 756 ~l----~yLH-~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~ 797 (947)
.+ +.+. ......++|+|+.+.||+ ..++.+.++||..+...
T Consensus 158 ~~~~l~~~l~~~~~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g 203 (301)
T 3dxq_A 158 EAGGVRSALAAHPLPLAACHCDPLCENFL-DTGERMWIVDWEYSGMN 203 (301)
T ss_dssp HHHHHHHHHHSSCCCCEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred HHHHHHHHHHhcCCCceeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence 11 1111 112345899999999999 56678899999988643
No 436
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.81 E-value=0.0033 Score=70.45 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=48.8
Q ss_pred cccccccCceeEEEEEeCC--------CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc-
Q 002250 634 ENLIGKGGSGNVYKVVLNS--------GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV- 704 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni- 704 (947)
.+.|+.|....||++...+ ++.+.+|+.... .....+.+|..+++.+...++
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-------------------~~~~~li~E~~~l~~L~~~g~~ 138 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-------------------ETESHLVAESVIFTLLSERHLG 138 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-------------------CCHHHHHHHHHHHHHHHHTTSS
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-------------------CcHHHHHHHHHHHHHHHhCCCC
Confidence 3457889899999998763 478899876210 011345579999988854333
Q ss_pred ceEEEEEecCCccEEEEeccCCCC
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGS 728 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gs 728 (947)
.++++.+.+ .+|+||++|.+
T Consensus 139 P~l~~~~~~----g~v~e~l~G~~ 158 (429)
T 1nw1_A 139 PKLYGIFSG----GRLEEYIPSRP 158 (429)
T ss_dssp SCEEEEETT----EEEECCCCEEE
T ss_pred CcEEEEeCC----CEEEEEeCCcc
Confidence 577776643 38999998643
No 437
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.61 E-value=0.0043 Score=66.69 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=79.5
Q ss_pred ccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc--cceEEEE--
Q 002250 635 NLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN--VVKLYCS-- 710 (947)
Q Consensus 635 ~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~-- 710 (947)
+.|+.|....+|++...+| .+++|+..+. .....+..|+.+++.+.... +.+++..
T Consensus 28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~-------------------~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~ 87 (322)
T 2ppq_A 28 KGIAEGVENSNFLLHTTKD-PLILTLYEKR-------------------VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKD 87 (322)
T ss_dssp EEECC---EEEEEEEESSC-CEEEEEECC----------------------CCHHHHHHHHHHHHHHTTCCCCCBCCBTT
T ss_pred eccCCCcccceEEEEeCCc-cEEEEEeCCC-------------------CCHHHHHHHHHHHHHHHHCCCCCCcccCCCC
Confidence 4567788899999987755 6889987321 12245667888888774322 2333321
Q ss_pred ----EecCCccEEEEeccCCCChHH--------------Hhhhc----CCc------cCCHHHHHHH------------H
Q 002250 711 ----ITSEDSNLLVYEYLPNGSLWD--------------RLHTC----HKI------EMDWVVRYAI------------A 750 (947)
Q Consensus 711 ----~~~~~~~~lv~e~~~~gsL~~--------------~l~~~----~~~------~~~~~~~~~i------------~ 750 (947)
....+..++||+|++|..+.. .++.. ... ...|...+.- .
T Consensus 88 g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~ 167 (322)
T 2ppq_A 88 GELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLR 167 (322)
T ss_dssp CCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHH
T ss_pred CCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhH
Confidence 122355689999999865321 11211 000 0123321110 0
Q ss_pred HHHHHHHHHHhc----CCCCCeEeccCCCCCeEecCCCCeEEeccccce
Q 002250 751 VGAAKGLEYLHH----GFDRPVIHRDVKSSNILLDLEWKPRIADFGLAK 795 (947)
Q Consensus 751 ~~ia~~l~yLH~----~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 795 (947)
..+...+++++. .....++|+|+.+.||+++++..+.++||+.+.
T Consensus 168 ~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 168 EEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp HHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred HHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 113344555542 123579999999999999987666899999875
No 438
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.59 E-value=0.011 Score=63.54 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=81.0
Q ss_pred ccccccCceeEEEEEeCCCcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc--cceEEEE--
Q 002250 635 NLIGKGGSGNVYKVVLNSGKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN--VVKLYCS-- 710 (947)
Q Consensus 635 ~~iG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~-- 710 (947)
..++ |....||++...+|+.+++|+..+.. .....+..|..+++.+.... +++++..
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~------------------~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g 92 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER------------------WTADQILEEHQFALQLVNDEVPVAAPVAFNG 92 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT------------------SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTT
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC------------------CCHHHHHHHHHHHHHHHHcCCeecceeecCC
Confidence 3466 88889999887778789999873211 12346677888888874322 3444432
Q ss_pred ---EecCCccEEEEeccCCCChH-----H------H---hhhc----C---CccCCHHHH----HHH-------------
Q 002250 711 ---ITSEDSNLLVYEYLPNGSLW-----D------R---LHTC----H---KIEMDWVVR----YAI------------- 749 (947)
Q Consensus 711 ---~~~~~~~~lv~e~~~~gsL~-----~------~---l~~~----~---~~~~~~~~~----~~i------------- 749 (947)
...++..++||||++|..+. . . ++.. . ....++... ...
T Consensus 93 ~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (328)
T 1zyl_A 93 QTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKA 172 (328)
T ss_dssp BSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHH
T ss_pred cEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHH
Confidence 12244557899999875432 1 1 1111 0 111222211 000
Q ss_pred --HHHHHHHHHHHhc----CCCCCeEeccCCCCCeEecCCCCeEEecccccee
Q 002250 750 --AVGAAKGLEYLHH----GFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKI 796 (947)
Q Consensus 750 --~~~ia~~l~yLH~----~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 796 (947)
...+...++.+.. .....++|+|+++.||+++ + .+.++||+.+..
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 173 AFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 0011112222221 1245689999999999999 4 899999998764
No 439
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.55 E-value=0.0085 Score=67.44 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=47.7
Q ss_pred cccccccCceeEEEEEeCC-CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc-ceEEEEE
Q 002250 634 ENLIGKGGSGNVYKVVLNS-GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV-VKLYCSI 711 (947)
Q Consensus 634 ~~~iG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~ 711 (947)
.+.|+.|-...+|++...+ ++.+++|+..+.. ...-...+|..+++.+...++ .++++.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~------------------~~~idR~~E~~vl~~L~~~gl~P~ll~~~ 174 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKT------------------DEIINREREKKISCILYNKNIAKKIYVFF 174 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-C------------------CSCSCHHHHHHHHHHHTTSSSBCCEEEEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCCh------------------hhhcCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3567889999999999875 4788888762110 111123579999998864444 5777777
Q ss_pred ecCCccEEEEeccCCCCh
Q 002250 712 TSEDSNLLVYEYLPNGSL 729 (947)
Q Consensus 712 ~~~~~~~lv~e~~~~gsL 729 (947)
.. ..||||++|.++
T Consensus 175 ~~----G~v~e~I~G~~l 188 (458)
T 2qg7_A 175 TN----GRIEEFMDGYAL 188 (458)
T ss_dssp TT----EEEEECCCSEEC
T ss_pred CC----eEEEEeeCCccC
Confidence 32 359999987443
No 440
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.47 E-value=0.0072 Score=66.11 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=81.4
Q ss_pred ccccccCceeEEEEEeCC--------CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-ccccc
Q 002250 635 NLIGKGGSGNVYKVVLNS--------GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVNVV 705 (947)
Q Consensus 635 ~~iG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv 705 (947)
+.+..|-...+|++...+ ++.+.+|+..+ .......+.+|..+++.+. +.-..
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~------------------~~~~~~~~~rE~~vl~~L~~~gv~P 117 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA------------------ILQGVDSLVLESVMFAILAERSLGP 117 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---------------------CCHHHHHHHHHHHHHHHHTTSSC
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC------------------ccchHHHHHHHHHHHHHHHhcCCCC
Confidence 456678889999998752 47889987511 0122345668999999884 33345
Q ss_pred eEEEEEecCCccEEEEeccCCCChHH--------------H---hhhcC---CccCC--HHHHHHHHHHHH---------
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSLWD--------------R---LHTCH---KIEMD--WVVRYAIAVGAA--------- 754 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL~~--------------~---l~~~~---~~~~~--~~~~~~i~~~ia--------- 754 (947)
++++.+.+ .+||||++|.++.. . ++... ..... |.+..+...++.
T Consensus 118 ~ll~~~~~----g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~ 193 (379)
T 3feg_A 118 QLYGVFPE----GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPE 193 (379)
T ss_dssp CEEEEETT----EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCS
T ss_pred eEEEEcCC----ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccch
Confidence 77777654 28999999755431 1 11110 11122 333333332221
Q ss_pred ----------HHHHHHh----c-CCCCCeEeccCCCCCeEecCC----CCeEEecccccee
Q 002250 755 ----------KGLEYLH----H-GFDRPVIHRDVKSSNILLDLE----WKPRIADFGLAKI 796 (947)
Q Consensus 755 ----------~~l~yLH----~-~~~~~ivH~Dlkp~NIll~~~----~~~kl~DfG~a~~ 796 (947)
..++.|. . .....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 194 ~~~~~~~~l~~~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 194 MNLLEMYSLKDEMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp CCHHHHTTHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 1223332 1 123468999999999999876 7899999998863
No 441
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.36 E-value=0.0057 Score=67.20 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=44.1
Q ss_pred ccccccCceeEEEEEeCC---------CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhccccc-c
Q 002250 635 NLIGKGGSGNVYKVVLNS---------GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVN-V 704 (947)
Q Consensus 635 ~~iG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-i 704 (947)
+.++.|....+|++...+ ++.+++|+..+.. ........|..+++.+...+ +
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~------------------~~~~~~~~E~~~l~~L~~~g~~ 100 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV------------------DELYNTISEFEVYKTMSKYKIA 100 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG------------------GGTSCHHHHHHHHHHHHHTTSS
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc------------------cceecHHHHHHHHHHHHhcCCC
Confidence 457788889999998764 2678888762110 00112467888888885434 4
Q ss_pred ceEEEEEecCCccEEEEeccCCCCh
Q 002250 705 VKLYCSITSEDSNLLVYEYLPNGSL 729 (947)
Q Consensus 705 v~l~~~~~~~~~~~lv~e~~~~gsL 729 (947)
.++++... -++||||++|.++
T Consensus 101 P~~~~~~~----~~~v~e~i~G~~l 121 (369)
T 3c5i_A 101 PQLLNTFN----GGRIEEWLYGDPL 121 (369)
T ss_dssp CCEEEEET----TEEEEECCCSEEC
T ss_pred CceEEecC----CcEEEEEecCCcC
Confidence 46776542 3789999987543
No 442
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.26 E-value=0.0062 Score=55.46 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=33.7
Q ss_pred EEeccCCCCC--CCCccccccCCCCEEEccCccCcccCCCCccCCCcCcEEEccCcccc
Q 002250 234 NFDVSQNRLE--GDLSELRFLNQLSSLHLFENQFSGEIPEEFGEFKHLTELSLYTNRLT 290 (947)
Q Consensus 234 ~L~Ls~N~l~--~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 290 (947)
.++.+++.++ .++..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555 4443322 35667777777776555566667777777777777664
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.73 E-value=0.02 Score=61.95 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCCeEeccCCCCCeEecCCCCeEEeccccceec
Q 002250 765 DRPVIHRDVKSSNILLDLEWKPRIADFGLAKIV 797 (947)
Q Consensus 765 ~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~ 797 (947)
...++|+|+.+.||++++++.+.++||+.+...
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 357999999999999998888999999887643
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.34 E-value=0.043 Score=60.23 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=82.3
Q ss_pred ccccccCceeEEEEEeCC--------CcEEEEEEecCCCCCCCCCccchhhhhhcccC---ChhhHHHHHHHHhhcc-cc
Q 002250 635 NLIGKGGSGNVYKVVLNS--------GKELAVKHIWPSNSGFRGDYRSSTAILSKRSS---RSSEYDAEVATLSAVR-HV 702 (947)
Q Consensus 635 ~~iG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~E~~~l~~l~-h~ 702 (947)
+.|..|-...+|++..++ ++.|.+++.-+...... .-+... ....+.. +.+....|..+++.+. +.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~-~~~~~~-~~idR~~~~~~~~~~~~E~~~l~~L~~~G 135 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRS-CNKEGS-EQAQKENEFQGAEAMVLESVMFAILAERS 135 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-------------------------CHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCccccc-cccccc-chhhhhhhhccchhhHHHHHHHHHHHhcC
Confidence 446668888999998764 36788887632110000 000000 0001111 1223446899988884 44
Q ss_pred ccceEEEEEecCCccEEEEeccCCCChHH--H---------------hhhcC---CccCC--HHHHHHHHHHHH------
Q 002250 703 NVVKLYCSITSEDSNLLVYEYLPNGSLWD--R---------------LHTCH---KIEMD--WVVRYAIAVGAA------ 754 (947)
Q Consensus 703 niv~l~~~~~~~~~~~lv~e~~~~gsL~~--~---------------l~~~~---~~~~~--~~~~~~i~~~ia------ 754 (947)
-..++++++..+ +|+||++|-+|.. + ++... ..... |....++..++.
T Consensus 136 i~Pkl~~~~~~G----~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~ 211 (401)
T 3f2s_A 136 LGPKLYGIFPQG----RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTE 211 (401)
T ss_dssp SSCCEEEEETTE----EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCS
T ss_pred CCCeEEEEeCCC----eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcc
Confidence 456778776532 8999999744321 1 11110 11122 223222222211
Q ss_pred ----------------HHH----HHHhc-CCCCCeEeccCCCCCeEecCC------CCeEEeccccce
Q 002250 755 ----------------KGL----EYLHH-GFDRPVIHRDVKSSNILLDLE------WKPRIADFGLAK 795 (947)
Q Consensus 755 ----------------~~l----~yLH~-~~~~~ivH~Dlkp~NIll~~~------~~~kl~DfG~a~ 795 (947)
.-+ +++.. .....++|+|+.+.||+++++ +.+.++||..|.
T Consensus 212 ~~~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 212 ESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 22321 124468999999999999887 789999999875
No 445
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=95.26 E-value=0.075 Score=52.08 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=66.2
Q ss_pred CChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeEecCCCCeEEeccccceecccCCCCcce
Q 002250 727 GSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNILLDLEWKPRIADFGLAKIVQTGEAGDLT 806 (947)
Q Consensus 727 gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~ 806 (947)
-+|.+.+... ..++++.+.+.++.|.+.+|.-.-.. ..+ ..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~~~-~~PlsEEqaWALc~Qc~~~L~~~~~~-~~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~----------- 97 (229)
T 2yle_A 33 LSLEEILRLY-NQPINEEQAWAVCYQCCGSLRAAARR-RQP-RHRVRSAAQIRVWRDGAVTLAP-AADD----------- 97 (229)
T ss_dssp EEHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHT-TCC-CCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred ccHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHhhhhc-ccC-CceecCCcceEEecCCceeccc-cccc-----------
Confidence 4789999874 56899999999999999888766210 011 1233456889999999988764 2110
Q ss_pred ecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCC
Q 002250 807 HVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRP 848 (947)
Q Consensus 807 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p 848 (947)
.....+.|||... ...+.+.-|||+|+++|..+--..|
T Consensus 98 ---~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 ---AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp ------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ---ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 1123466888763 3456788999999999999874444
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.52 E-value=0.16 Score=56.27 Aligned_cols=73 Identities=8% Similarity=0.078 Sum_probs=47.8
Q ss_pred ccccccCceeEEEEEeCC--------CcEEEEEEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcc-ccccc
Q 002250 635 NLIGKGGSGNVYKVVLNS--------GKELAVKHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVR-HVNVV 705 (947)
Q Consensus 635 ~~iG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv 705 (947)
+.+..|-...+|++...+ ++.+.+|+..+.. ...-...+|..+++.+. +.-..
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t------------------~~~idR~~E~~~l~~L~~~gi~P 137 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV------------------GKFYDSKVELDVFRYLSNINIAP 137 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-------------------CCCCHHHHHHHHHHHHHTTSSC
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc------------------chhcCHHHHHHHHHHHHhcCCCC
Confidence 456678889999998763 5788888752110 11123467899998885 33345
Q ss_pred eEEEEEecCCccEEEEeccCCCCh
Q 002250 706 KLYCSITSEDSNLLVYEYLPNGSL 729 (947)
Q Consensus 706 ~l~~~~~~~~~~~lv~e~~~~gsL 729 (947)
++++.+. -+.||||++|..+
T Consensus 138 ~l~~~~~----~~~I~efI~G~~l 157 (424)
T 3mes_A 138 NIIADFP----EGRIEEFIDGEPL 157 (424)
T ss_dssp CEEEEET----TEEEEECCCSEEC
T ss_pred CEEEEcC----CCEEEEEeCCccC
Confidence 6665442 3789999998653
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=90.42 E-value=1.2 Score=49.06 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=25.1
Q ss_pred CeEeccCCCCCeEe------cCCCCeEEecccccee
Q 002250 767 PVIHRDVKSSNILL------DLEWKPRIADFGLAKI 796 (947)
Q Consensus 767 ~ivH~Dlkp~NIll------~~~~~~kl~DfG~a~~ 796 (947)
.++|+|+.+.||++ +++..+.++||-+|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4457799999998864
No 448
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=86.35 E-value=1.3 Score=30.87 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHH--HHHHHhhhhhhh
Q 002250 576 VWCLIAITMVLLVL--LASYFVVKLKQN 601 (947)
Q Consensus 576 i~~~i~~~~~~~vl--~~~~~~~~~~~~ 601 (947)
++.+++++++++++ ++++|++++|+.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 34444443333322 333444444333
No 449
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=75.31 E-value=4.6 Score=39.48 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=76.5
Q ss_pred cccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhcCCCCCeEeccCCCCCeE
Q 002250 700 RHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHHGFDRPVIHRDVKSSNIL 779 (947)
Q Consensus 700 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~~~~~~ivH~Dlkp~NIl 779 (947)
.||+.+.. ..-..++.+.+.|+.-+.+.=+..+++ .+...+++++..|+....+++ .-+|--+.|+||+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik~-----~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L~P~NL~ 111 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIKS-----FTKNEKLRYLLNIKNLEEVNR-----TRYTFVLAPDELF 111 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGGG-----SCHHHHHHHHHHGGGGGGGGG-----SSEECCCSGGGEE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHHHHh-----cCHHHHHHHHHHHHHHHHHhc-----CceEEEEecceEE
Confidence 57888866 455555655566665543322222333 688889999999988776655 3467889999999
Q ss_pred ecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 002250 780 LDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPI 849 (947)
Q Consensus 780 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~ 849 (947)
++.++.+++.-.|+-..+ +|. ..+...=.-.+=+++..+++++..|
T Consensus 112 f~~~~~p~i~~RGik~~l-------------------~P~-----~~~ee~fL~qyKAliiall~~K~~F 157 (215)
T 4ann_A 112 FTRDGLPIAKTRGLQNVV-------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSF 157 (215)
T ss_dssp ECTTSCEEESCCEETTTB-------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCH
T ss_pred EcCCCCEEEEEccCccCC-------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCH
Confidence 999999999887764322 222 1111122335667888899999887
No 450
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=73.69 E-value=7.5 Score=38.08 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=74.1
Q ss_pred cccccceEEEEEecCCccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHH-HHhcCCCCCeEeccCCCCCe
Q 002250 700 RHVNVVKLYCSITSEDSNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLE-YLHHGFDRPVIHRDVKSSNI 778 (947)
Q Consensus 700 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~-yLH~~~~~~ivH~Dlkp~NI 778 (947)
.||+. -...-.+++.+.+.|+.-+++.=+..++. .+...+++.+..++.... +++ .-+|--+.|+||
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~~-----~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL 115 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIRK-----TTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENL 115 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHHT-----SCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHHh-----cCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceE
Confidence 57777 23334556666666776645433344443 678888999888876555 444 557788999999
Q ss_pred EecCCCCeEEeccccceecccCCCCcceecccccccccCccccccCCCCCccchHHHHHHHHHHHhCCCCC
Q 002250 779 LLDLEWKPRIADFGLAKIVQTGEAGDLTHVIAGTHGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGKRPI 849 (947)
Q Consensus 779 ll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slGv~l~elltg~~p~ 849 (947)
+++.++.+++.-.|+-.. ++|.-+ ++.-=.-.+=+++..++.++..|
T Consensus 116 ~f~~~~~p~i~hRGi~~~-------------------lpP~e~-----~ee~fl~qyKali~all~~K~~F 162 (219)
T 4ano_A 116 MFNRALEPFFLHVGVKES-------------------LPPDEW-----DDERLLREVKATVLALTEGEYRF 162 (219)
T ss_dssp EECTTCCEEESCCEETTT-------------------BSSCSC-----CHHHHHHHHHHHHHHHTTCSSCH
T ss_pred EEeCCCcEEEEEcCCccc-------------------CCCCCC-----CHHHHHHHHHHHHHHHHcCCCCH
Confidence 999999999988776432 233211 11112234567778888888776
No 451
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=70.86 E-value=5.2 Score=27.85 Aligned_cols=11 Identities=0% Similarity=-0.058 Sum_probs=4.8
Q ss_pred hhHHHHHHHHH
Q 002250 576 VWCLIAITMVL 586 (947)
Q Consensus 576 i~~~i~~~~~~ 586 (947)
++.+++.++++
T Consensus 12 IA~gVVgGv~~ 22 (44)
T 2l2t_A 12 IAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred EEEeehHHHHH
Confidence 44444444444
No 452
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=68.82 E-value=0.63 Score=52.26 Aligned_cols=63 Identities=5% Similarity=-0.121 Sum_probs=17.9
Q ss_pred CCcccccccCceeEEEEEeCC-CcEEEE------EEecCCCCCCCCCccchhhhhhcccCChhhHHHHHHHHhhcccccc
Q 002250 632 KPENLIGKGGSGNVYKVVLNS-GKELAV------KHIWPSNSGFRGDYRSSTAILSKRSSRSSEYDAEVATLSAVRHVNV 704 (947)
Q Consensus 632 ~~~~~iG~G~~g~Vy~~~~~~-~~~vav------K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni 704 (947)
.+.+.+| ||.||+|.+.. ..+||| |...... ........|.+|..+++.++|||+
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~---------------~~~e~~~~~~rea~l~~~~~H~ni 206 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDG---------------VSEKRLTSLVRRATLKENEQIPKY 206 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC--------------------------------------------------
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCcccccccc---------------cccccccccccccccccccccccc
Confidence 3456677 99999999763 367888 6542111 111334567889999999999999
Q ss_pred ceEEEEEe
Q 002250 705 VKLYCSIT 712 (947)
Q Consensus 705 v~l~~~~~ 712 (947)
++.+++..
T Consensus 207 v~~h~f~~ 214 (463)
T 3cxl_A 207 EKIHNFKV 214 (463)
T ss_dssp CBCCCEEE
T ss_pred CCCcceEE
Confidence 99877654
No 453
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=67.51 E-value=8.9 Score=26.69 Aligned_cols=27 Identities=11% Similarity=-0.042 Sum_probs=12.2
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHh
Q 002250 569 SHHVSTFVWCLIAITMVLLVLLASYFV 595 (947)
Q Consensus 569 ~~~~~~~i~~~i~~~~~~~vl~~~~~~ 595 (947)
.+...-..+++..+.+++++++..+|+
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 333444445554444455554433333
No 454
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=64.41 E-value=14 Score=25.74 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 002250 575 FVWCLIAITMVLLVLLASYFVV 596 (947)
Q Consensus 575 ~i~~~i~~~~~~~vl~~~~~~~ 596 (947)
..+++ .+.++++.++..+|+.
T Consensus 16 ~~vVG-vll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 16 SAVVG-ILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHhhee
Confidence 34455 4455555555444444
No 455
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=50.26 E-value=29 Score=23.30 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=8.3
Q ss_pred chhhhHHHHHHHHHH
Q 002250 573 STFVWCLIAITMVLL 587 (947)
Q Consensus 573 ~~~i~~~i~~~~~~~ 587 (947)
+...++++++++++.
T Consensus 9 s~GaIAGiVvG~v~g 23 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLG 23 (38)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CCCceeeeehHHHHH
Confidence 445556666665543
No 456
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=42.70 E-value=22 Score=23.88 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=14.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhh
Q 002250 571 HVSTFVWCLIAITMVLLVLLASYFVV 596 (947)
Q Consensus 571 ~~~~~i~~~i~~~~~~~vl~~~~~~~ 596 (947)
...-.+++++++++.++++++ +|++
T Consensus 11 GaIAGiVvG~v~gv~li~~l~-~~~~ 35 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGIL-VFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CceeeeehHHHHHHHHHHHHH-HHHe
Confidence 345567777777766665544 4444
No 457
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=42.25 E-value=16 Score=24.90 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHHH
Q 002250 575 FVWCLIAITMVLLV 588 (947)
Q Consensus 575 ~i~~~i~~~~~~~v 588 (947)
.++.++++++++++
T Consensus 14 ~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 14 AVIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEEeehhHHHHHHH
Confidence 44455555555544
No 458
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=41.69 E-value=50 Score=34.45 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=42.7
Q ss_pred ccEEEEeccCCCChHHHhhhcCCccCCHHHHHHHHHHHHHHHHHHhc-CCCCCeEe-ccCCCCCeEecCCCC-eEEeccc
Q 002250 716 SNLLVYEYLPNGSLWDRLHTCHKIEMDWVVRYAIAVGAAKGLEYLHH-GFDRPVIH-RDVKSSNILLDLEWK-PRIADFG 792 (947)
Q Consensus 716 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~~ia~~l~yLH~-~~~~~ivH-~Dlkp~NIll~~~~~-~kl~DfG 792 (947)
..+++|||++|..|.+.-...-...+.......+.. .-+++++.. ..+.+.+. .--.+.|||+++++. +.++|-+
T Consensus 156 ~~~l~meyv~G~~L~e~~~~~~~~~f~~~~~k~LG~--Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n~~~~~IDhn 233 (342)
T 1cja_A 156 ANILLMELVRGITLNKLTTTSAPEVLTKSTMQQLGS--LMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGATVVPIDSK 233 (342)
T ss_dssp SEEEEEECCCEEESTTCCSSSHHHHSCHHHHHHHHH--HHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTTCEEECSCC
T ss_pred cceehhhhcCCCccccchhhhhhhhcCHHHHHhhch--hheehhhhcCCccCcccccCCCChhheEEeCCCCeEEEEcCC
Confidence 456999999976654432211011123232222211 334555553 22333222 235889999987554 8899999
Q ss_pred ccee
Q 002250 793 LAKI 796 (947)
Q Consensus 793 ~a~~ 796 (947)
.+..
T Consensus 234 ~af~ 237 (342)
T 1cja_A 234 IIPL 237 (342)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8854
No 459
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.74 E-value=62 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.016 Sum_probs=25.0
Q ss_pred ccccCCccCCCCCCCCEEECcCcccccccCccccCCCCCcEEEeec
Q 002250 170 VTGQIPEGIGNLTQLQNLELSDNELFGEIPAGIVKLNKLWQLELYN 215 (947)
Q Consensus 170 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 215 (947)
++.+-...|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444456666666666666554 3334445566666666665554
No 460
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.74 E-value=41 Score=28.21 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=22.7
Q ss_pred cccccCccccCCCCCcEEEeecccccccCCccCCCCCCccEEeccC
Q 002250 194 LFGEIPAGIVKLNKLWQLELYNNSLSGRLPVGFSNLTNLMNFDVSQ 239 (947)
Q Consensus 194 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 239 (947)
++.+...+|.++.+|+.+.|-.+ ++.+...+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555543 2324445555555555555543
No 461
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=34.48 E-value=71 Score=21.96 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=9.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhh
Q 002250 573 STFVWCLIAITMVLLVLLASYFVV 596 (947)
Q Consensus 573 ~~~i~~~i~~~~~~~vl~~~~~~~ 596 (947)
...++++.+++..++++++++..|
T Consensus 9 p~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333333344444444444
No 462
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=34.06 E-value=12 Score=24.88 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 002250 574 TFVWCLIAITMVLLVLLASYFV 595 (947)
Q Consensus 574 ~~i~~~i~~~~~~~vl~~~~~~ 595 (947)
..+++++.+.++++++.+++.+
T Consensus 8 ~~vl~avlal~vi~iisLIiLi 29 (39)
T 2l6w_A 8 VVVISAILALVVLTIISLIILI 29 (39)
Confidence 3444444444444444444433
No 463
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=25.13 E-value=1.4e+02 Score=21.68 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 002250 576 VWCLIAITMVLLVLLASYFVV 596 (947)
Q Consensus 576 i~~~i~~~~~~~vl~~~~~~~ 596 (947)
++++.+++.+++++++++..|
T Consensus 11 iIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344333
No 464
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.03 E-value=78 Score=22.00 Aligned_cols=9 Identities=44% Similarity=0.106 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 002250 578 CLIAITMVL 586 (947)
Q Consensus 578 ~~i~~~~~~ 586 (947)
.+|+++++.
T Consensus 11 ~~IA~gVVg 19 (44)
T 2ks1_B 11 PSIATGMVG 19 (44)
T ss_dssp SSSTHHHHH
T ss_pred ceEEeehhH
Confidence 334444444
No 465
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=20.68 E-value=85 Score=23.69 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 002250 576 VWCLIAITMVLLVLLASYFVV 596 (947)
Q Consensus 576 i~~~i~~~~~~~vl~~~~~~~ 596 (947)
++++.++++++++.+.+|+..
T Consensus 12 ivlGg~~~lll~~glcI~ccv 32 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSV 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhh
Confidence 344444444444444444333
Done!