BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002252
(947 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/454 (48%), Positives = 289/454 (63%), Gaps = 39/454 (8%)
Query: 53 IRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQR 111
IR+ FLDF+ S+GH+V+ S+SLVP DPT+L T AGM QFK +FLG R RA TSQR
Sbjct: 7 IRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQR 66
Query: 112 CIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGLPANR 165
C+R ND+ENVG T+RHHTFFEMLGNFSFGDYFK +AI +AW T E F LP R
Sbjct: 67 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKER 126
Query: 166 LWISVYEDDDEAFEIWNKEVGVPVEHIKRMG-------ADDNFWNSGATGPCGPCSEIYY 218
LW++VYE DDEA+EIW KEVG+P E I R+G A DNFW G TGPCGPC+EI+Y
Sbjct: 127 LWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 186
Query: 219 DFHPDR---GCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIAR 275
D H D G D R+IE +N+VFMQ+N++ DG++EPL + ++DTG+GLERIA
Sbjct: 187 D-HGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAA 245
Query: 276 ILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFP 335
+LQ V +NY+ DL +I+ +++ + D +N +L++I DH+R+ +L++DGV P
Sbjct: 246 VLQHVNSNYDIDLFRTLIQAVAKVTGAT-----DLSNKSLRVIADHIRSCAFLIADGVMP 300
Query: 336 SNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXX 395
SN RGYV+RR+IRRAVR G +LG K F + I++ D+K
Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAK--------ETFFYKLVGPLIDVMGSAGEDLKRQQ 352
Query: 396 XXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFP 455
F +TLERG LLD+ LA + SG L G+ AF LYDT+GFP
Sbjct: 353 AQVEQVLKTEEEQFARTLERGLALLDEELA------KLSGDT--LDGETAFRLYDTYGFP 404
Query: 456 VEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 489
V++T +V E + VD GF+ ME QRR+++ A
Sbjct: 405 VDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/454 (48%), Positives = 288/454 (63%), Gaps = 39/454 (8%)
Query: 53 IRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQR 111
IR+ FLDF+ S+GH+V+ S+SLVP DPT+L T AGM QFK +FLG R RA TSQR
Sbjct: 7 IRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQR 66
Query: 112 CIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGLPANR 165
C+R ND+ENVG T+RHHTFFEMLGNFSFGDYFK +AI +AW T E F LP R
Sbjct: 67 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKER 126
Query: 166 LWISVYEDDDEAFEIWNKEVGVPVEHIKRMG-------ADDNFWNSGATGPCGPCSEIYY 218
LW++VYE DDEA+EIW KEVG+P E I R+G A DNFW G TGPCGPC+EI+Y
Sbjct: 127 LWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 186
Query: 219 DFHPDR---GCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIAR 275
D H D G D R+IE +N+VFMQ+N++ DG++EPL + ++DT +GLERIA
Sbjct: 187 D-HGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAA 245
Query: 276 ILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFP 335
+LQ V +NY+ DL +I+ +++ + D +N +L++I DH+R+ +L++DGV P
Sbjct: 246 VLQHVNSNYDIDLFRTLIQAVAKVTGAT-----DLSNKSLRVIADHIRSCAFLIADGVMP 300
Query: 336 SNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXX 395
SN RGYV+RR+IRRAVR G +LG K F + I++ D+K
Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAK--------ETFFYKLVGPLIDVMGSAGEDLKRQQ 352
Query: 396 XXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFP 455
F +TLERG LLD+ LA + SG L G+ AF LYDT+GFP
Sbjct: 353 AQVEQVLKTEEEQFARTLERGLALLDEELA------KLSGDT--LDGETAFRLYDTYGFP 404
Query: 456 VEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 489
V++T +V E + VD GF+ ME QRR+++ A
Sbjct: 405 VDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/444 (45%), Positives = 286/444 (64%), Gaps = 26/444 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYV----D 179
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
RG + D R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 180 RG---EEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 236
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 237 FEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXX 403
+RR++RRA+R G LGI E FL + +++ +++
Sbjct: 296 IRRILRRAMRFGYKLGI--------ENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVK 347
Query: 404 XXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
F++TL+ G + + +++ AL R++ LSG++ F YDT+GFPV++ E+A
Sbjct: 348 GEEKRFIKTLKAGMEYIQEVIQKALEEGRKT-----LSGKEVFTAYDTYGFPVDLIDEIA 402
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQ 487
E G+ +D++GF E+E QR +++
Sbjct: 403 REKGLGIDLEGFQCELEEQRERAR 426
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/444 (45%), Positives = 286/444 (64%), Gaps = 26/444 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 3 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 63 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D
Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYV----D 178
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
RG + D R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 179 RG---EEYEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 235
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 236 FEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLRAITFAISDGVIPSNEGRGYV 294
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXX 403
+RR++RRA+R G LGI E FL + +++ +++
Sbjct: 295 IRRILRRAMRFGYKLGI--------ENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVK 346
Query: 404 XXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
F++TL+ G + + +++ AL R++ LSG++ F YDT+GFPV++ E+A
Sbjct: 347 GEEKRFIKTLKAGMEYIQEVIQKALEEGRKT-----LSGKEVFTAYDTYGFPVDLIDEIA 401
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQ 487
E G+ +D++GF E+E QR +++
Sbjct: 402 REKGLGIDLEGFQCELEEQRERAR 425
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/444 (45%), Positives = 281/444 (63%), Gaps = 26/444 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AG + FK +FLG R RA
Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGLEKRPYKRAT 63
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFE LGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQXGDVGPCGPSSEIYV----D 179
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
RG + D R++E +NLVF QYN+ ++G L PL NIDTG GLERIA +LQ +N
Sbjct: 180 RG---EEYEGDERYLEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLERIASVLQGKNSN 236
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 237 FEIDIIFPLIQFGEEVSGKKYGEKFE-TDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXX 403
+RR++RRA R G LGI E FL + +++ +++
Sbjct: 296 IRRILRRAXRFGYKLGI--------ENPFLYKGVDLVVDIXKEPYPELELSREFVKGIVK 347
Query: 404 XXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
F++TL+ G + + +++ AL R++ LSG++ F YDT+GFPV++ E+A
Sbjct: 348 GEEKRFIKTLKAGXEYIQEVIQKALEEGRKT-----LSGKEVFTAYDTYGFPVDLIDEIA 402
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQ 487
E G+ +D++GF E+E QR +++
Sbjct: 403 REKGLGIDLEGFQCELEEQRERAR 426
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 207 bits (526), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 213/817 (26%), Positives = 338/817 (41%), Gaps = 169/817 (20%)
Query: 10 PCGHFLFKGATGVPSARSTSASVQPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVL 69
PC + F G G+P + D +R++FL F+ H++
Sbjct: 41 PCDEYQFIGKPGIPRKYTL----------------------DEMREKFLRFFEK--HEIY 76
Query: 70 PSASL--VPEDPT----VLLTIAGMLQFKP-IFLGKVPRQVPRAATSQRCIRTNDVENVG 122
P + P P VLL A ++ F+P + G+ SQ IR D++NVG
Sbjct: 77 PHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVG 136
Query: 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWN 182
T RH T FEM+ + +F + + I W E TVE AFE +
Sbjct: 137 ITGRHFTIFEMMAHHAFN--YPGKPIYWMDE--TVEL-----------------AFEFFT 175
Query: 183 KEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYN 242
KE+ + E I +N W G G GP E+ Y R +E
Sbjct: 176 KELKMKPEDIT---FKENPWAGG--GNAGPAFEVLY-----------------RGLEVAT 213
Query: 243 LVFMQYNKKDDGSLE------------PLKQKNIDTGLGLERIARILQKVPNNYETDL-- 288
LVFMQY K + + + P++ K +DTG GLER+ + Q P Y+ L
Sbjct: 214 LVFMQYKKAPENAPQDQVVVIKGEKYIPMETKVVDTGYGLERLVWMSQGTPTAYDAVLGY 273
Query: 289 -IFPIIKKA----------------------SELANVSYAQSNDRTNLNLKI-------- 317
+ P+ K A +L ++ Y + + + +
Sbjct: 274 VVEPLKKMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIR 333
Query: 318 -------IGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEG 370
I DH +A+ ++L+DGV PSN+ GY+ R LIR+++R R LG LE
Sbjct: 334 PYELIYAIADHTKALTFMLADGVVPSNVKAGYLARLLIRKSIRHLRELG--------LEV 385
Query: 371 AFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSR 430
+A EL + K + +TL RG L+ + +A +
Sbjct: 386 PLSEIVALHIKELHKTF-PEFKEMEDIILEMIELEEKKYAETLRRGSDLVRREIA----K 440
Query: 431 TRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEM---ENQRRQSQ 487
++ G + + + Y++ G EI KE+AE+ GV V++ M E +R + +
Sbjct: 441 LKKKG-IKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVNIPDNFYSMVAKEAERTKEE 499
Query: 488 AAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLL 547
V +L + +PDT L Y+ K V++V K V+L
Sbjct: 500 KGEELVDF------ELLKDLPDTRRLYYEDPFMKEF-------DAKVLRVIKDW---VIL 543
Query: 548 NRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIXXXXXXXXX 607
+ T FY E GGQ D G L V V+V +V+K +G V +HK
Sbjct: 544 DATAFYPEGGGQPYDTGVLIVNGRE------VKVTNVQK-VGKVIIHK-VEDPGAFKEGM 595
Query: 608 XXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLD 667
+D K R + HHT TH+L AL +V+G+ QAGS + D R D + ++ + +
Sbjct: 596 IVHGKIDWKRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYKRISE 655
Query: 668 TELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSME 725
EL+EIE L N + + + + + A++ ++ G G ++RVV++ ++
Sbjct: 656 EELKEIEMLANRIVMEDRKVTWEWLPRTTAEQKYGFRLYQGGVVPGREIRVVKIEDWDVQ 715
Query: 726 LCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGE 762
CGGTH+ +T + KI+ + I G+ RI GE
Sbjct: 716 ACGGTHLPSTGLVGPIKILRTERIQDGVERIIFACGE 752
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 176 bits (445), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 219/781 (28%), Positives = 316/781 (40%), Gaps = 164/781 (20%)
Query: 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPT-VLLTIAGMLQFKPIFL-GKVPRQVP 104
P D R+ +L+F+ RGH + +V T + LTIA + F+P G P
Sbjct: 59 PFELDEXREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPAN 118
Query: 105 RAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPAN 164
SQ CIR +D+++VGRT RH T FE + +F +Y KE W+ TV +
Sbjct: 119 PLTISQPCIRLDDLDSVGRTGRHLTLFEXXAHHAF-NYPGKEIY---WKNETVAY----- 169
Query: 165 RLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDR 224
E+ N E+GV E I + W G G GPC E
Sbjct: 170 ------------CTELLN-ELGVKKEDIV---YKEEPWAGG--GNAGPCLEAI------- 204
Query: 225 GCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLE-----PLKQKN--IDTGLGLERIARIL 277
+G +E LVF + +G +E K N +DTG GLER
Sbjct: 205 ------VGG----LEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDTGYGLERFVWAS 254
Query: 278 QKVPNNYETDLIFP-----------------------IIKKASELANVSYAQSNDRTNLN 314
+ P Y D IFP I+ ++S+LA + +R N
Sbjct: 255 KGTPTVY--DAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIXGELRGERLNQL 312
Query: 315 LKIIGD------------------------HLRAIVYLLSDGVFPSNIGRGYVVRRLIRR 350
K + D H R I++ L DG+ PSN G GY+ R IRR
Sbjct: 313 RKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGAGYLARLXIRR 372
Query: 351 AVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFV 410
++R L + D +E E + LST +
Sbjct: 373 SLRLAEELELGLDLYDLVEXHKKILGFEFDVPLST------------VQEILELEKERYR 420
Query: 411 QTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSV 470
T+ +G +L+++++ R + +L D LYD+ G PVE+ +A E G V
Sbjct: 421 TTVSKGTRLVERLV----ERKK------KLEKDDLIELYDSHGIPVELAVGIAAEKGAEV 470
Query: 471 DMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVN 530
+ DI E +R S+A K L + P TE L YD +LL
Sbjct: 471 EXPK-DIYAELAKRHSKAEKVQEK-----KITLQNEYPATEKLYYDD-------PTLLEF 517
Query: 531 GKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGS 590
VI V V+LNR+ FY ESGGQ D G+L G EV DV ++ G
Sbjct: 518 EAEVIGVEGDF---VILNRSAFYPESGGQDNDVGYLIANGGK------FEVVDVLEADG- 567
Query: 591 VFVHKGTIXXXXXXXXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLV 650
V +H + ++D +R R HH+ATH+L +L+KV+G QAG+
Sbjct: 568 VVLH--VVKGAKPEVGTKVKGVIDSDVRWRHXRHHSATHVLLYSLQKVLGNHVWQAGARK 625
Query: 651 AFDRLRFDF-NFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEK 709
F + R D +F RP + E + + +L K + + R A FG +
Sbjct: 626 EFSKARLDVTHFRRPSEEEIKEIEX------LANREILANKPIKWEWXDRIEAERKFGFR 679
Query: 710 Y-------GEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGE 762
G ++RVV+V G ++ CGGTH +T EI KI+ + I G+ R E AGE
Sbjct: 680 LYQGGVPPGRKIRVVQV-GDDVQACGGTHCRSTGEIGXLKILKVESIQDGVIRFEFAAGE 738
Query: 763 A 763
A
Sbjct: 739 A 739
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 204/820 (24%), Positives = 324/820 (39%), Gaps = 175/820 (21%)
Query: 10 PCGHFLFKGATGVPSARSTSASVQPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVL 69
PC + F G G+P + D +R+ FL F+ H++
Sbjct: 41 PCDEYQFIGKPGIPRXYTL----------------------DEMREXFLRFFEX--HEIY 76
Query: 70 PSASLV--PEDPT----VLLTIAGMLQFKP-IFLGKVPRQVPRAATSQRCIRTNDVENVG 122
P + P P VLL A ++ F+P + G+ SQ IR D++NVG
Sbjct: 77 PHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVG 136
Query: 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWN 182
T RH T FEM+ + +F + I W E TVE AFE +
Sbjct: 137 ITGRHFTIFEMMAHHAFN--YPGXPIYWMDE--TVEL-----------------AFEFFT 175
Query: 183 KEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYN 242
KE+ + E I +N W G G GP E+ Y R +E
Sbjct: 176 KELXMXPEDIT---FKENPWAGG--GNAGPAFEVLY-----------------RGLEVAT 213
Query: 243 LVFMQYNKKDDGSLE------------PLKQKNIDTGLGLERIARILQKVPNNYETDLIF 290
LVFMQY + + + P++ +DTG GLER+ + Q P Y+ L +
Sbjct: 214 LVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLGY 273
Query: 291 PI--------IKKASE-----------------LANVSYAQSNDRTNLNLKI-------- 317
+ I+K E L ++ Y + + + +
Sbjct: 274 VVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIR 333
Query: 318 -------IGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEG 370
I DH +A+ ++L+DGV PSN+ GY+ R LIR+++R R LG LE
Sbjct: 334 PYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELG--------LEV 385
Query: 371 AFLPSIAEKAIELSTHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSR 430
+A EL + + +TL RG L+ + +A +
Sbjct: 386 PLSEIVALHIXELHKTF-PEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIA----K 440
Query: 431 TRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEM---ENQRRQSQ 487
++ G + + + Y++ G EI E+AE+ GV V++ M E +R + +
Sbjct: 441 LKKKG-IKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEE 499
Query: 488 AAHNAVKLSVDDSADLAEKIPDTEFLGYD---TLSAKAIVESLLVNGKPVIKVSKGSDVE 544
V +L + +PDT L Y+ A V ++ +
Sbjct: 500 KGEELVDF------ELLKDLPDTRRLYYEDPFMXEFDAXVLRVIXDW------------- 540
Query: 545 VLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIXXXXXX 604
V+L+ T FY E GGQ D G L V ++ V V+ V G V +H
Sbjct: 541 VILDATAFYPEGGGQPYDTGVLIVN---GREVXVTNVQXV----GXVIIHX-VEDPGAFX 592
Query: 605 XXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRP 664
+D R + HHT TH+L AL +V+G+ QAGS + D R D + +
Sbjct: 593 EGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXR 652
Query: 665 LLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGV 722
+ + EL EIE L N + + + + + A++ ++ G G ++RVV +
Sbjct: 653 ISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDW 712
Query: 723 SMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGE 762
++ GGTH+ +T + I+ + I G+ RI GE
Sbjct: 713 DVQAXGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 36/219 (16%)
Query: 542 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEV-KDVKKSLGSVFVHKGTIXX 600
D +LL++T FY GGQ D +GT V++V KD + ++ V
Sbjct: 27 DNAILLDQTIFYPTGGGQPHD-------RGTINGVEVLDVYKDEEGNVWHVVKEPEKFKV 79
Query: 601 XXXXXXXXXXAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQ-AGSLVAFDRLRFDF 659
+D R + HT HLL+ L +V+G+ Q GS ++ ++ R+D
Sbjct: 80 GDEVELK-----IDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDI 134
Query: 660 NFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEV 719
+ L + E+I L N ++ + ++ I G++ Q+R EV
Sbjct: 135 AYPENL-NKYKEQIISLFNKYVDEGGEVK--------------IWWEGDRRYTQIRDFEV 179
Query: 720 -PGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIE 757
P CGGTHV + EI K + I G +R+E
Sbjct: 180 IP------CGGTHVKDIKEIGHIKKLKRSSIGRGKQRLE 212
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 623 VHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIG 682
+ H+ HL+ A+K++ G G ++ +DF+ + + + E+IE+ + +
Sbjct: 73 LRHSTAHLMAHAIKRLYGNVKFGVGPVIE-GGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131
Query: 683 DANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVP----------GVSMELCGGTHV 732
+ ++ KV++ D+AK +F + + +P G +LC G HV
Sbjct: 132 ENMKIERKVVSRDEAKE-----LFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHV 186
Query: 733 NNTAEIRAFKIISEQGIA----SGIRRIEAVAGEAFIE 766
+TA+I+ FK++S G S + ++ + G AF +
Sbjct: 187 PSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFD 224
>pdb|1V4P|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1V4P|C Chain C, Crystal Structure Of Alanyl-Trna Synthetase From
Pyrococcus Horikoshii Ot3
pdb|1WXO|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
pdb|1WXO|C Chain C, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With Zinc
Length = 157
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 625 HTATHLLQAALKKVIGQETSQA-GSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 683
H+A H+++ A+ KV+G E + V ++ F R D E+ EIERL N + +
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKE 68
Query: 684 ANLLQTKVMALDDAKRAGAIAMFGEKY------GEQVRVVEVPGV---SMELCGGTHVNN 734
++ + ++A++ MFGE E VR+++V + ++ C H
Sbjct: 69 NAPIKIYELPREEAEK-----MFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKT 123
Query: 735 TAEIRAFKI 743
T EI KI
Sbjct: 124 TGEIGPIKI 132
>pdb|1V7O|A Chain A, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1V7O|B Chain B, Alanyl-Trna Synthetase Editing Domain Homologue Protein
From Pyrococcus Horikoshii
pdb|1WNU|A Chain A, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
pdb|1WNU|B Chain B, Structure Of Archaeal Trans-Editing Protein Alax In
Complex With L- Serine
Length = 165
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 15/129 (11%)
Query: 625 HTATHLLQAALKKVIGQETSQA-GSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 683
H+A H+++ A+ KV+G E + V ++ F R D E+ EIERL N + +
Sbjct: 9 HSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKE 68
Query: 684 ANLLQTKVMALDDAKRAGAIAMFGEK------YGEQVRVVEVPGV---SMELCGGTHVNN 734
++ + ++A++ FGE E VR+++V + ++ C H
Sbjct: 69 NAPIKIYELPREEAEKX-----FGEDXYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKT 123
Query: 735 TAEIRAFKI 743
T EI KI
Sbjct: 124 TGEIGPIKI 132
>pdb|2ZVF|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|C Chain C, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|D Chain D, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|E Chain E, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|F Chain F, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|G Chain G, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
pdb|2ZVF|H Chain H, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase C-Terminal Dimerization Domain
Length = 171
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 775 MKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNE 834
++ S L+V+ ++ VE E+ + R E+ L++ A A + +A +
Sbjct: 16 LREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILXERAEEFDSXK- 74
Query: 835 IRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQ 894
+V + D D +L+ AE L + AV EGKV + FS D
Sbjct: 75 ---VVAEVVDADXQALQKLAERLAE----KGAVGCLXAKGEGKV-FVVTFSGQKYD---- 122
Query: 895 AGKFIGPIAKLCGGGGGGRPNFAQ 918
A + + I ++ G GGGR + AQ
Sbjct: 123 ARELLREIGRVAKGSGGGRKDVAQ 146
>pdb|3KEW|A Chain A, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
pdb|3KEW|B Chain B, Crystal Structure Of Probable Alanyl-Trna-Synthase From
Clostridium Perfringens
Length = 241
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 709 KYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAG 761
K E++R+VE+ G+ + C G H NT +++ KI + + RIE VAG
Sbjct: 177 KTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKHKNAT-RIEYVAG 228
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 623 VHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIG 682
+ H+ HLL A+K++ G ++ + +D + R L ++E +E+ ++
Sbjct: 71 IRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQEDVEALEKRMHELAE 129
Query: 683 DANLLQTKVMALDDAKRAGAIAMFGEKY-----GEQVRVVEVPGVS-----MELCGGTHV 732
+ K ++ +A+ A GE Y E + + PG+ +++C G HV
Sbjct: 130 KNYDVIKKKVSWHEARET--FANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187
Query: 733 NNTAEIRAFKIISEQGIA----SGIRRIEAVAGEAFIEYINARDSYMKHL 778
N FK++ G S + ++ + G A+ + A ++Y++ L
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADK-KALNAYLQRL 236
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 623 VHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIG 682
+ H+ HLL A+K+ + T A V + +D + R L ++E +E+ ++
Sbjct: 71 IRHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAE 129
Query: 683 DANLLQTKVMALDDAKRAGAIAMFGEKY-----GEQVRVVEVPGVS-----MELCGGTHV 732
+ K ++ +A+ A GE Y E + + PG+ +++C G HV
Sbjct: 130 KNYDVIKKKVSWHEARET--FANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187
Query: 733 NNTAEIRAFKIISEQG 748
N FK++ G
Sbjct: 188 PNMRFCHHFKLMKTAG 203
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 501 ADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVE 544
ADLA+K P+ FL D K I E V P K DV+
Sbjct: 57 ADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 100
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 501 ADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVE 544
ADLA+K P+ FL D K I E V P K DV+
Sbjct: 60 ADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 103
>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
Length = 534
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 474 GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKP 533
G D+ EN QS A LSV D + E + E LG++ LS + L NG
Sbjct: 10 GVDLGTENLYFQSNAXR--ALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIK 67
Query: 534 VIKVS 538
VI+VS
Sbjct: 68 VIEVS 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,025,301
Number of Sequences: 62578
Number of extensions: 1150045
Number of successful extensions: 2704
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2630
Number of HSP's gapped (non-prelim): 31
length of query: 947
length of database: 14,973,337
effective HSP length: 108
effective length of query: 839
effective length of database: 8,214,913
effective search space: 6892312007
effective search space used: 6892312007
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)