Query 002252
Match_columns 947
No_of_seqs 341 out of 2065
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 19:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0013 AlaS Alanyl-tRNA synth 100.0 9E-254 2E-258 2222.2 90.9 867 46-942 4-879 (879)
2 PLN02900 alanyl-tRNA synthetas 100.0 1E-239 3E-244 2159.8 93.5 875 40-939 3-935 (936)
3 TIGR00344 alaS alanine--tRNA l 100.0 1E-239 2E-244 2157.2 89.0 839 52-921 1-851 (851)
4 PRK00252 alaS alanyl-tRNA synt 100.0 4E-238 9E-243 2152.0 92.5 861 47-941 1-864 (865)
5 KOG0188 Alanyl-tRNA synthetase 100.0 3E-222 6E-227 1867.2 62.9 858 48-941 2-894 (895)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 4E-217 9E-222 1962.2 88.2 820 6-938 17-901 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 2E-216 4E-221 1956.2 88.1 822 6-941 20-899 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 3E-192 5E-197 1663.4 57.3 578 48-760 1-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 1E-171 3E-176 1502.9 14.5 543 52-617 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 6E-110 1E-114 863.0 18.9 231 50-280 1-232 (232)
11 COG2872 Predicted metal-depend 100.0 1.3E-47 2.8E-52 404.8 22.9 231 510-765 2-239 (241)
12 KOG2105 Predicted metal-depend 100.0 6.5E-46 1.4E-50 387.1 29.5 365 542-941 43-411 (415)
13 PLN02961 alanine-tRNA ligase 100.0 3.2E-46 7E-51 395.7 24.8 208 542-759 2-222 (223)
14 PRK12305 thrS threonyl-tRNA sy 99.8 4.5E-18 9.8E-23 204.3 17.1 141 621-763 7-159 (575)
15 PLN02837 threonine-tRNA ligase 99.7 1.7E-17 3.6E-22 200.1 17.5 155 607-763 30-200 (614)
16 PRK00413 thrS threonyl-tRNA sy 99.7 1E-16 2.2E-21 194.9 18.6 161 602-764 50-225 (638)
17 PRK12444 threonyl-tRNA synthet 99.7 1.4E-15 3.1E-20 184.8 18.5 143 619-763 71-228 (639)
18 TIGR00418 thrS threonyl-tRNA s 99.6 7.6E-15 1.6E-19 176.2 15.4 139 624-763 1-153 (563)
19 PLN02908 threonyl-tRNA synthet 99.5 2.6E-13 5.6E-18 166.0 15.8 145 619-765 118-277 (686)
20 PF07973 tRNA_SAD: Threonyl an 99.4 1.3E-13 2.9E-18 109.7 5.0 44 714-757 1-44 (44)
21 COG0441 ThrS Threonyl-tRNA syn 99.2 1.4E-10 3E-15 137.7 13.9 138 618-761 24-171 (589)
22 smart00863 tRNA_SAD Threonyl a 99.2 1.7E-11 3.7E-16 97.4 3.9 44 714-757 1-44 (44)
23 PF02272 DHHA1: DHHA1 domain; 98.2 3.2E-06 7E-11 73.1 6.2 65 866-936 3-68 (68)
24 KOG1637 Threonyl-tRNA syntheta 96.4 0.0015 3.3E-08 74.7 2.0 69 622-748 68-136 (560)
25 cd00768 class_II_aaRS-like_cor 96.0 0.02 4.4E-07 59.3 8.2 175 51-273 3-211 (211)
26 PRK09348 glyQ glycyl-tRNA synt 95.8 0.13 2.9E-06 55.3 13.1 175 46-286 2-180 (283)
27 PRK14799 thrS threonyl-tRNA sy 95.0 0.029 6.4E-07 67.7 5.6 86 650-763 31-121 (545)
28 TIGR00388 glyQ glycyl-tRNA syn 94.6 0.43 9.2E-06 51.8 12.2 176 48-290 1-180 (293)
29 PF01411 tRNA-synt_2c: tRNA sy 94.0 0.011 2.5E-07 71.4 -1.0 92 177-294 106-200 (552)
30 cd00733 GlyRS_alpha_core Class 94.0 0.68 1.5E-05 50.0 12.3 170 50-286 2-176 (279)
31 PRK14908 glycyl-tRNA synthetas 93.8 0.35 7.6E-06 61.7 11.3 175 46-286 3-181 (1000)
32 TIGR00644 recJ single-stranded 93.6 1.3 2.9E-05 53.8 15.6 96 839-942 328-423 (539)
33 TIGR00458 aspS_arch aspartyl-t 91.3 1.9 4.2E-05 50.9 12.5 97 51-156 137-247 (428)
34 cd00776 AsxRS_core Asx tRNA sy 90.2 1.5 3.3E-05 49.8 10.0 94 51-155 28-137 (322)
35 COG0752 GlyQ Glycyl-tRNA synth 89.1 4.2 9.1E-05 43.9 11.4 174 46-286 3-181 (298)
36 TIGR00462 genX lysyl-tRNA synt 88.0 1.9 4.1E-05 48.6 8.7 98 51-159 5-123 (304)
37 cd00669 Asp_Lys_Asn_RS_core As 87.8 0.97 2.1E-05 50.1 6.1 95 51-155 5-115 (269)
38 PF02091 tRNA-synt_2e: Glycyl- 87.5 1.2 2.5E-05 48.6 6.2 170 51-286 2-175 (284)
39 PRK09350 poxB regulator PoxA; 87.5 2.4 5.3E-05 47.8 9.2 108 51-170 9-138 (306)
40 TIGR00499 lysS_bact lysyl-tRNA 83.4 6.8 0.00015 47.2 10.7 100 51-156 176-294 (496)
41 PRK00488 pheS phenylalanyl-tRN 79.1 2.4 5.3E-05 48.4 4.7 27 50-76 110-136 (339)
42 PTZ00425 asparagine-tRNA ligas 78.4 31 0.00066 42.5 13.9 50 103-156 343-398 (586)
43 PRK05159 aspC aspartyl-tRNA sy 71.7 18 0.00039 43.0 9.6 85 51-142 140-239 (437)
44 PRK11070 ssDNA exonuclease Rec 70.7 1.5E+02 0.0032 36.7 17.3 96 837-942 355-455 (575)
45 KOG1501 Arginine N-methyltrans 68.9 6.9 0.00015 45.7 5.0 74 263-336 72-156 (636)
46 PTZ00450 macrophage migration 65.5 6.6 0.00014 37.9 3.5 24 149-172 79-102 (113)
47 PF03002 Somatostatin: Somatos 62.3 3.7 8E-05 26.6 0.7 12 9-20 5-16 (18)
48 PRK00484 lysS lysyl-tRNA synth 58.0 45 0.00098 40.3 9.5 99 51-155 176-293 (491)
49 PF01422 zf-NF-X1: NF-X1 type 56.9 4.7 0.0001 27.1 0.5 9 207-215 12-20 (20)
50 PTZ00401 aspartyl-tRNA synthet 56.5 17 0.00038 44.3 5.7 94 51-155 217-327 (550)
51 PTZ00397 macrophage migration 54.9 13 0.00028 35.7 3.5 29 144-172 74-102 (116)
52 cd00670 Gly_His_Pro_Ser_Thr_tR 53.4 19 0.0004 38.3 4.8 106 51-162 6-149 (235)
53 KOG1759 Macrophage migration i 53.1 16 0.00035 35.3 3.7 26 148-173 77-102 (115)
54 COG0016 PheS Phenylalanyl-tRNA 52.4 15 0.00033 42.0 4.0 23 50-72 113-135 (335)
55 PF04536 TPM: TLP18.3, Psb32 a 47.3 2.4E+02 0.0053 26.3 12.2 49 833-882 21-75 (119)
56 PTZ00326 phenylalanyl-tRNA syn 43.8 20 0.00043 43.2 3.4 58 212-282 425-483 (494)
57 TIGR00443 hisZ_biosyn_reg ATP 42.4 96 0.0021 35.0 8.5 107 49-162 10-143 (314)
58 PRK14538 putative bifunctional 42.0 2.6E+02 0.0055 36.3 12.9 78 849-939 602-679 (838)
59 PLN02850 aspartate-tRNA ligase 40.7 45 0.00097 40.7 5.8 83 51-140 229-325 (530)
60 PF01187 MIF: Macrophage migra 39.2 25 0.00053 33.7 2.7 24 149-172 77-100 (114)
61 PRK12295 hisZ ATP phosphoribos 38.7 1.1E+02 0.0024 35.7 8.4 109 48-162 5-136 (373)
62 PF12999 PRKCSH-like: Glucosid 38.4 92 0.002 32.6 6.8 96 721-818 68-173 (176)
63 PF01409 tRNA-synt_2d: tRNA sy 38.4 16 0.00034 40.1 1.4 27 50-76 19-45 (247)
64 smart00438 ZnF_NFX Repressor o 38.2 14 0.0003 26.6 0.6 11 207-217 12-22 (26)
65 PRK12292 hisZ ATP phosphoribos 37.6 43 0.00092 39.1 4.8 108 49-162 19-154 (391)
66 cd00773 HisRS-like_core Class 36.7 51 0.0011 36.1 5.0 108 50-163 5-139 (261)
67 COG2024 Phenylalanyl-tRNA synt 36.2 47 0.001 38.4 4.6 89 183-283 257-345 (536)
68 cd00830 KAS_III Ketoacyl-acyl 36.0 12 0.00025 41.8 -0.1 78 127-214 206-284 (320)
69 PRK12420 histidyl-tRNA synthet 35.5 81 0.0018 37.2 6.8 117 38-161 9-154 (423)
70 PRK09537 pylS pyrolysyl-tRNA s 34.2 1.2E+02 0.0026 36.0 7.7 170 50-282 206-399 (417)
71 TIGR01834 PHA_synth_III_E poly 32.3 1.3E+02 0.0028 34.5 7.2 51 762-812 263-317 (320)
72 COG1512 Beta-propeller domains 31.9 2.3E+02 0.0049 31.8 9.0 66 836-903 65-137 (271)
73 PRK12293 hisZ ATP phosphoribos 31.8 67 0.0014 35.9 5.0 114 36-162 8-142 (281)
74 PF12329 TMF_DNA_bd: TATA elem 31.7 2.2E+02 0.0047 25.5 7.3 53 766-818 5-60 (74)
75 cd00777 AspRS_core Asp tRNA sy 30.3 28 0.00061 38.9 1.7 98 51-156 5-116 (280)
76 PLN02853 Probable phenylalanyl 29.9 47 0.001 40.0 3.6 24 50-73 223-246 (492)
77 PRK12444 threonyl-tRNA synthet 27.6 3.1E+02 0.0067 34.3 10.3 151 51-220 278-474 (639)
78 KOG2783 Phenylalanyl-tRNA synt 26.7 34 0.00074 39.6 1.6 23 260-282 293-315 (436)
79 PF11760 CbiG_N: Cobalamin syn 26.2 2.4E+02 0.0052 26.0 6.6 54 847-908 22-75 (84)
80 PLN02530 histidine-tRNA ligase 24.2 1.5E+02 0.0033 35.7 6.6 112 50-168 87-226 (487)
81 PF06156 DUF972: Protein of un 23.6 3.7E+02 0.0081 25.9 7.7 34 786-819 24-57 (107)
82 TIGR00747 fabH 3-oxoacyl-(acyl 23.4 39 0.00084 37.8 1.3 53 157-218 230-283 (318)
83 PF03962 Mnd1: Mnd1 family; I 23.2 3.4E+02 0.0073 28.6 8.1 20 796-815 108-127 (188)
84 PRK10884 SH3 domain-containing 23.1 3E+02 0.0065 29.6 7.7 31 786-816 120-150 (206)
85 TIGR00013 taut 4-oxalocrotonat 23.0 1E+02 0.0022 25.8 3.5 30 143-172 16-45 (63)
86 PF11382 DUF3186: Protein of u 22.4 4.9E+02 0.011 29.5 9.8 68 788-860 36-109 (308)
87 cd00775 LysRS_core Lys_tRNA sy 22.3 1.9E+02 0.0041 33.1 6.5 99 51-156 12-123 (329)
88 PLN02850 aspartate-tRNA ligase 22.2 45 0.00097 40.7 1.5 29 262-290 494-522 (530)
89 PRK03932 asnC asparaginyl-tRNA 22.2 1.8E+02 0.0038 34.9 6.5 99 51-155 137-254 (450)
90 COG1190 LysU Lysyl-tRNA synthe 22.2 33 0.00072 41.1 0.4 130 7-142 116-283 (502)
91 PF00152 tRNA-synt_2: tRNA syn 21.9 49 0.0011 37.6 1.7 23 267-289 308-330 (335)
92 TIGR00457 asnS asparaginyl-tRN 21.8 46 0.001 39.8 1.5 29 262-290 417-445 (453)
93 cd00777 AspRS_core Asp tRNA sy 21.8 2.1E+02 0.0045 32.0 6.6 29 262-290 248-276 (280)
94 PF02092 tRNA_synt_2f: Glycyl- 21.7 5.8E+02 0.012 31.5 10.7 64 314-386 445-508 (548)
95 PF11867 DUF3387: Domain of un 21.3 8.2E+02 0.018 28.0 11.4 141 259-412 34-191 (335)
96 PF13815 Dzip-like_N: Iguana/D 21.1 2.3E+02 0.0051 27.4 6.0 45 762-813 65-109 (118)
97 cd04766 HTH_HspR Helix-Turn-He 20.7 3.4E+02 0.0074 24.7 6.7 39 775-814 50-88 (91)
98 PTZ00401 aspartyl-tRNA synthet 20.6 52 0.0011 40.4 1.6 29 262-290 514-542 (550)
99 PRK06462 asparagine synthetase 20.4 54 0.0012 37.6 1.6 101 51-155 34-151 (335)
100 PRK03932 asnC asparaginyl-tRNA 20.4 52 0.0011 39.3 1.5 29 262-290 414-442 (450)
101 PRK13169 DNA replication intia 20.2 4.4E+02 0.0096 25.6 7.5 32 786-817 24-55 (110)
102 cd00775 LysRS_core Lys_tRNA sy 20.2 52 0.0011 37.6 1.4 28 262-289 297-324 (329)
103 PRK01964 4-oxalocrotonate taut 20.2 1.1E+02 0.0024 25.9 3.2 30 143-172 16-45 (64)
104 PLN02532 asparagine-tRNA synth 20.2 54 0.0012 40.8 1.7 50 103-156 389-444 (633)
No 1
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-254 Score=2222.19 Aligned_cols=867 Identities=50% Similarity=0.851 Sum_probs=817.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCccccccccccCCccccCCC
Q 002252 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRT 124 (947)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t 124 (947)
.+||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+||||||||+|||||||+|
T Consensus 4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~NDieNVG~T 83 (879)
T COG0013 4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRTNDIDNVGYT 83 (879)
T ss_pred ccCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeeccccccccCchhhcCcc
Confidence 4599999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccC
Q 002252 125 SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS 204 (947)
Q Consensus 125 ~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~ 204 (947)
+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+||+++|++++|+|++||+++|.+||||+|
T Consensus 84 ~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~ 163 (879)
T COG0013 84 ARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEM 163 (879)
T ss_pred ccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHHHhhcCCCHHHeeecCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEeecCCCCCCCCCCC--CCCCceEEEeeeeccccccc-CCCccccCccCcccccchHHHHHHHHhCCC
Q 002252 205 GATGPCGPCSEIYYDFHPDRGCSDVDL--GDDTRFIEFYNLVFMQYNKK-DDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (947)
Q Consensus 205 G~~GpcGpcsEi~~d~g~~~~~~~~~~--~~~~r~lEiwNlVFmq~~~~-~~g~~~~L~~~~iDtGmGlERi~~vlqg~~ 281 (947)
|+ ||||||||||||||+.++++.+.. .|++|||||||||||||||+ .+|+|.|||+||||||||||||+|||||+|
T Consensus 164 G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~ 242 (879)
T COG0013 164 GD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVP 242 (879)
T ss_pred CC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCC
Confidence 99 999999999999999999887743 78999999999999999999 699999999999999999999999999999
Q ss_pred CCccccccHHHHHHHHHHhCCCccCCccccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 002252 282 NNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIK 361 (947)
Q Consensus 282 s~ydtdlf~p~i~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~ 361 (947)
||||||+|.|||+.+++++|..|..+.+..++++||||||+||++|||+||++|||+|||||||||||||+||+++||++
T Consensus 243 tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~ 322 (879)
T COG0013 243 TNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIK 322 (879)
T ss_pred cchhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999765533478999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccc
Q 002252 362 GDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLS 441 (947)
Q Consensus 362 ~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~~g~~~~l~ 441 (947)
.| ||++||+.+++.|+++||||+++++.|+++|+.||++|.+||++|+++|+++++ ++++ + ++||
T Consensus 323 ~~--------fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~----~~~~-~--~~l~ 387 (879)
T COG0013 323 EP--------FLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA----KLKK-S--KTLD 387 (879)
T ss_pred ch--------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-C--CccC
Confidence 99 999999999999999999999999999999999999999999999999999998 6554 3 6899
Q ss_pred hHHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCch--hHhhhhCCCCccccccccc
Q 002252 442 GQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDS--ADLAEKIPDTEFLGYDTLS 519 (947)
Q Consensus 442 g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~--~~l~~~~~~t~f~gY~~~~ 519 (947)
|++||+||||||||+|||++||+|+|++||+++|..+|++||++||+++ .+....... ..+.+..++|+|+||++++
T Consensus 388 ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~ 466 (879)
T COG0013 388 GEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLE 466 (879)
T ss_pred hHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-ccccccchhhhhhhhccCCCceeeeccccc
Confidence 9999999999999999999999999999999999999999999999765 222111111 2233346899999999999
Q ss_pred ceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCC-CCcccceeEEEEEEEEecCCEEEEEEEe
Q 002252 520 AKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQ-GTNQQTAVVEVKDVKKSLGSVFVHKGTI 598 (947)
Q Consensus 520 ~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~-~~~~~~~~~~V~dv~k~~~g~ivH~~~~ 598 (947)
.+++|+.++.+++.|+++.+|+.++||||+||||||||||++|+|+|..++ . .+.|.||||.++++++|.+..
T Consensus 467 ~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~------~~~V~dvqK~~~~~~vH~~~~ 540 (879)
T COG0013 467 MEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGG------RFEVTDVQKVGNGVIVHKGKV 540 (879)
T ss_pred ceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCc------EEEEEEEEEcCCceEEEEEee
Confidence 999999999887668899999999999999999999999999999999864 4 899999999965999999999
Q ss_pred eccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHH
Q 002252 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLIN 678 (947)
Q Consensus 599 ~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN 678 (947)
..|.+++|+.|.++|||+||+.+|+||||||||++||++++|.|++|+||+++++++||||+|++++|+|+|++||++||
T Consensus 541 ~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vN 620 (879)
T COG0013 541 ESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVN 620 (879)
T ss_pred ccCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEcCHHHHHHhccccccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeeccccceEEEEE
Q 002252 679 GWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEA 758 (947)
Q Consensus 679 ~~I~~nlpV~~~~~~~eEA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~~ 758 (947)
++|++|+||++.+|+++||++.+++++|+++|++.||||+||++|+++||||||.|||+||.|||++++++++|+|||+|
T Consensus 621 e~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVrRIea 700 (879)
T COG0013 621 EIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEA 700 (879)
T ss_pred HHHHcCCceeEEEccHHHHHHhChHhhcCCcCCCeEEEEEECCceeeccCCcccCCccceeeEEEEEecccccCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccee--ecccCCeE
Q 002252 759 VAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFT--VGTSNEIR 836 (947)
Q Consensus 759 v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~~l~~~~~~--~~~~~~~~ 836 (947)
+||..|++++++..+.+++++..|++ +.+++.+|++|++++|+++|++.+|+++++......+...++. + ++++
T Consensus 701 vtG~~a~~~~~~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i---~g~~ 776 (879)
T COG0013 701 VTGEAALEYLQEQEDLLKEIASLLKV-PPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEI---GGVK 776 (879)
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceee---CCEE
Confidence 99999999999999999999999999 6666669999999999999999999998888777776665443 6 8999
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccc
Q 002252 837 VLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNF 916 (947)
Q Consensus 837 vv~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~ 916 (947)
+++..+++.|++.|+.+|+.|+++.++. +++|++ ..++|+.+++++++++..+ ++|++|+++++..+||||||+|+|
T Consensus 777 ~~~~~~~~~d~~~Lr~~a~~lk~k~~~~-vivl~~-~~~~Kv~~~~~v~~~~~~~-~~a~~lvk~la~~~gG~GGGr~d~ 853 (879)
T COG0013 777 VLAKEVDGADMKELREIADDLKKKLGSA-VIVLAS-VADGKVSLVVAVSKDLTDK-VKAGELVKELAAIVGGKGGGRPDM 853 (879)
T ss_pred EEEEEecCCCHHHHHHHHHHHHhhcCCc-EEEEEE-ecCCeEEEEEEechhhhcc-cCHHHHHHHHHHhcCCCCCCchhh
Confidence 9999999999999999999999998884 888887 5666999999999766654 999999999999999999999999
Q ss_pred eeeccCCcccHHHHHHHHHHHHHHHh
Q 002252 917 AQAGGRKPENLSIALEKARADLVSVL 942 (947)
Q Consensus 917 AQG~g~~~~~l~~al~~~~~~l~~~L 942 (947)
|||||+++.+++++++.+.+++++.|
T Consensus 854 Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 854 AQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred heeCCCCcccHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998654
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=1.4e-239 Score=2159.84 Aligned_cols=875 Identities=53% Similarity=0.875 Sum_probs=805.4
Q ss_pred cccCCCCCCCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCC-----CCCCcccccccc
Q 002252 40 EDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPR-----QVPRAATSQRCI 113 (947)
Q Consensus 40 ~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p-----~~~r~~~~QkCi 113 (947)
+|-+..++||++|||++||+||+++||+++||||||| +|||||||||||+||||||+|.++| |++|+|++||||
T Consensus 3 ~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCi 82 (936)
T PLN02900 3 EDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCI 82 (936)
T ss_pred CCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecccc
Confidence 4566777899999999999999999999999999999 7999999999999999999999998 789999999999
Q ss_pred cc----CCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChH------HHHHHHHH
Q 002252 114 RT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDD------EAFEIWNK 183 (947)
Q Consensus 114 R~----nDldnVG~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~------e~~~iW~~ 183 (947)
|+ |||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||.+|+ ||++||++
T Consensus 83 R~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~~~d~Ea~~iW~~ 162 (936)
T PLN02900 83 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLD 162 (936)
T ss_pred cCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCcCCCHHHHHHHHH
Confidence 99 999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCc
Q 002252 184 EVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 263 (947)
Q Consensus 184 ~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~ 263 (947)
. ||++||+++|.+||||+||+|||||||||||||||+++++......+|+|||||||||||||||++||+|+|||+||
T Consensus 163 ~--~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~ 240 (936)
T PLN02900 163 Y--LPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKH 240 (936)
T ss_pred h--CCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCCCe
Confidence 7 99999999999999999999999999999999999998864222257899999999999999999999999999999
Q ss_pred ccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhC------CCccCCccccccceEEechhhhHHHHhhcCCCccCC
Q 002252 264 IDTGLGLERIARILQKVPNNYETDLIFPIIKKASELAN------VSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSN 337 (947)
Q Consensus 264 iDtGmGlERi~~vlqg~~s~ydtdlf~p~i~~i~~~~~------~~y~~~~~~~~~~~r~iaDH~R~~~~~i~DG~~Psn 337 (947)
||||||||||+|||||++||||||+|.|||+.|++++| +.|+.+....++++||||||+||++|||+||++|||
T Consensus 241 IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~PsN 320 (936)
T PLN02900 241 VDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVPSN 320 (936)
T ss_pred eecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCccCC
Confidence 99999999999999999999999999999999999999 566433224578999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHH-hCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002252 338 IGRGYVVRRLIRRAVRTGRL-LGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERG 416 (947)
Q Consensus 338 ~grgYvlRrilRRa~r~~~~-lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g 416 (947)
+|||||||||||||+||+++ ||++.| ||++||+.|++.|++.||||.++++.|++||..||++|.+||++|
T Consensus 321 ~grgYvlRrilRRa~r~~~~~lg~~~~--------fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G 392 (936)
T PLN02900 321 EGRGYVLRRLLRRAVRYGRLLLGAEEG--------FFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKG 392 (936)
T ss_pred CCccHHHHHHHHHHHHHHHHhcCCCcc--------hHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 899999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhccccc-
Q 002252 417 EKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKL- 495 (947)
Q Consensus 417 ~~~l~~~~~~~~~~~~~~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~- 495 (947)
+++|+++++ ++++.|+ +.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++....
T Consensus 393 ~~~l~~~i~----~~~~~~~-~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~ 467 (936)
T PLN02900 393 IEKFKKALA----AAKANGG-PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGG 467 (936)
T ss_pred HHHHHHHHH----HHhhcCC-CcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccc
Confidence 999999998 5543342 5799999999999999999999999999999999999999999999999876532211
Q ss_pred -ccCch---hHhhhh--CCCCccccccccc-ceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEe
Q 002252 496 -SVDDS---ADLAEK--IPDTEFLGYDTLS-AKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYV 568 (947)
Q Consensus 496 -~~~~~---~~l~~~--~~~t~f~gY~~~~-~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~ 568 (947)
...+. ..+.+. .++|+|+||+.++ ++|+|++++.+++.|+++.+|+.++|+||+|+|||||||||+|+|+|..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~ 547 (936)
T PLN02900 468 AIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEG 547 (936)
T ss_pred cccccHHHHHHHHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEec
Confidence 11110 222222 1578999999998 9999999998888899999998999999999999999999999999976
Q ss_pred CCCCcccceeEEEEEEEEecCCEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccc
Q 002252 569 TQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGS 648 (947)
Q Consensus 569 ~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs 648 (947)
+++ ..++|.+|++. +|.++|++...++++.+|++|.+.|||+||+++|++|||+|||++||+++||.|+.|.|+
T Consensus 548 ~~~-----~~~~V~dv~k~-~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs 621 (936)
T PLN02900 548 SGG-----AVVEVSDVQKA-GGFVLHIGTVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGS 621 (936)
T ss_pred CCC-----CEEEEEEEEEE-CCEEEEEEEeccCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccc
Confidence 442 14899999997 899999987666788999999999999999999999999999999999999999999999
Q ss_pred cccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHH-hccccccCCCCCCcEEEEEECCc-cccc
Q 002252 649 LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKR-AGAIAMFGEKYGEQVRVVEVPGV-SMEL 726 (947)
Q Consensus 649 ~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~-~~~~~l~~eky~~~VRVV~Igg~-d~e~ 726 (947)
+++++++||||++++++|++++.+||+.||++|++|+||++.+++++||++ .+++++++++|++.||||+|+++ |.++
T Consensus 622 ~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig~~~d~el 701 (936)
T PLN02900 622 LVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGVYSMEL 701 (936)
T ss_pred cccCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEECCccceeC
Confidence 999999999999999999999999999999999999999999999999999 68888899999999999999998 9999
Q ss_pred cCccccccccccceEEEEeeeccccceEEEEEEecHHHHHHHHHHHHHHHHHHHHcCC----------------------
Q 002252 727 CGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKV---------------------- 784 (947)
Q Consensus 727 CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~~v~G~~A~~~~~~~~~~l~~l~~~L~~---------------------- 784 (947)
||||||.||||||.|+|++++++++|++||+|+||.+|++++++.++++++++..|++
T Consensus 702 CGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 781 (936)
T PLN02900 702 CGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAVIP 781 (936)
T ss_pred CCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred --ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEEEEec-CCCHHHHHHHHHHHHHhc
Q 002252 785 --KDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMD-DMDADSLKSAAEYLVDTL 861 (947)
Q Consensus 785 --~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~~l~~~~~~~~~~~~~~vv~~~~~-~~d~~~L~~la~~l~~~~ 861 (947)
+++++++++++|++++++++|++++++.+++...++++++++..+ ++ .+++..++ +.+++.|+.+++.++++.
T Consensus 782 ~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~---~~-~~~v~~~~~~~d~~~Lr~la~~l~~~~ 857 (936)
T PLN02900 782 AAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSA---GK-SVLVARLDVGVDAAALKEAAEKVIAKL 857 (936)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---CC-eEEEEEecCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999988777655 55 56666676 579999999999999887
Q ss_pred CCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHHHHH
Q 002252 862 QDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLV 939 (947)
Q Consensus 862 ~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQG~g~~~~~l~~al~~~~~~l~ 939 (947)
++..++++++...++++.+++++++++++++++|++|++++++.+||||||+|.||||+|+++++++++++.++++++
T Consensus 858 ~~~~vvl~~~~~~~~k~~~~~~~~~~~~~~~~~A~~lvk~~~~~~gGkGGG~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 858 GDPAAVVLSSDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred CCceEEEEEecCCCCeEEEEEEEChHHhhcCCCHHHHHHHHHHhcCCCCCCcHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 653345554412578888989988888877899999999999999999999999999999999999999999988874
No 3
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.1e-239 Score=2157.21 Aligned_cols=839 Identities=51% Similarity=0.847 Sum_probs=785.9
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCccccccccccCCccccCCCCCcccc
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTF 130 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~rHhTf 130 (947)
|||++||+||++|||+++||||||| +|||||||||||+||||||+|+++||++|+||||||||+|||||||+|+|||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~nDld~VG~t~rHhTf 80 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQPCIRLNDIENVGRTARHHTF 80 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccccchhhhcCCCcchhh
Confidence 6999999999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCC
Q 002252 131 FEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPC 210 (947)
Q Consensus 131 FEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~Gpc 210 (947)
||||||||||||||+|||.|||||||++|||||+|||||||++|+||++||++ +|||++||+++|.+||||+||+ |||
T Consensus 81 FEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~~D~ea~~iW~~-~g~~~~~i~~~~~~dNfW~~G~-Gpc 158 (851)
T TIGR00344 81 FEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYEDDEEAYEIWEK-HGIPAERIIRCGDKDNFWDMGD-GPC 158 (851)
T ss_pred HHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcCCCHHHHHHHHh-cCCCHHHcccCCccCCcCCCCC-cCC
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred CCceEEEeecCCCCCCC-CCCC--CCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCcccc
Q 002252 211 GPCSEIYYDFHPDRGCS-DVDL--GDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETD 287 (947)
Q Consensus 211 GpcsEi~~d~g~~~~~~-~~~~--~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ydtd 287 (947)
|||||||||+|+.+++. +..+ .||+|||||||||||||||++||+|+|||+||||||||||||+|||||++||||||
T Consensus 159 GPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtD 238 (851)
T TIGR00344 159 GPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTD 238 (851)
T ss_pred ccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhh
Confidence 99999999999998763 2223 58899999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhCCCccCCc------c--ccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHHHHHHhC
Q 002252 288 LIFPIIKKASELANVSYAQSN------D--RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLG 359 (947)
Q Consensus 288 lf~p~i~~i~~~~~~~y~~~~------~--~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg 359 (947)
+|.|||++|++++|++|..+. + ..++++||||||+||++|||+||++|||+|||||||||||||+||+++||
T Consensus 239 ~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~~lg 318 (851)
T TIGR00344 239 IFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYVLRRLIRRALRHGKKLG 318 (851)
T ss_pred hHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchhHHHHHHHHHHHHHHhC
Confidence 999999999999999985322 0 23579999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 002252 360 IKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPR 439 (947)
Q Consensus 360 ~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~~g~~~~ 439 (947)
++.| ||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|+++++ +++ + ++
T Consensus 319 ~~~~--------fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~----~~~--~--~~ 382 (851)
T TIGR00344 319 LKEA--------FLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLK----KLG--K--KE 382 (851)
T ss_pred CCch--------HHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc--C--Cc
Confidence 9999 999999999999999999999999999999999999999999999999999998 442 2 47
Q ss_pred cchHHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCccccccccc
Q 002252 440 LSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLS 519 (947)
Q Consensus 440 l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~~~t~f~gY~~~~ 519 (947)
|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++...... +...+.+..++|+|+||++.+
T Consensus 383 i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~~~~-~~~~~~~~~~~t~~l~Y~~~~ 461 (851)
T TIGR00344 383 LDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTISFEL-QEIALANVYPATEFLGYEDLE 461 (851)
T ss_pred cCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhcccccc-cHHHHhcccCCccccceeccc
Confidence 9999999999999999999999999999999999999999999999998764322111 112232224679999999999
Q ss_pred ceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEecCCEEEEEEEee
Q 002252 520 AKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIR 599 (947)
Q Consensus 520 ~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~ 599 (947)
++|+|+++..+++.++++.+|+.++|+||+|+|||||||||+|+|+|..++. .++|.+|++. +|.++|++...
T Consensus 462 ~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~------~~~V~dv~~~-~g~i~H~~~~~ 534 (851)
T TIGR00344 462 FEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDG------KFRVVDVQKP-NGVVFHFGEVE 534 (851)
T ss_pred ccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCc------EEEEEEEEEE-CCEEEEEEEec
Confidence 9999999998888888888888899999999999999999999999986555 7999999998 79999998765
Q ss_pred ccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHH
Q 002252 600 EGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLING 679 (947)
Q Consensus 600 ~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~ 679 (947)
.+++++|++|.+.|||+||+++|++|||+|||++||+++||.|++|.|++++++++||||++++++|++++.+||+.||+
T Consensus 535 ~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe 614 (851)
T TIGR00344 535 GGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNE 614 (851)
T ss_pred cCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHcCCCeEEEEcCHHHHHHhccccccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeeccccceEEEEEE
Q 002252 680 WIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAV 759 (947)
Q Consensus 680 ~I~~nlpV~~~~~~~eEA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~~v 759 (947)
+|++|+||++.+++++||++.+.+++|+++|++.||||+|+++|.++||||||.||||||.|+|++.+++++|++||+|+
T Consensus 615 lI~~n~pV~~~~~~~eeA~~~~~~~~~~e~y~~~VRVV~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~~RIe~v 694 (851)
T TIGR00344 615 QILANIPIKVIFMDLDEAKAKGAFALFGEKYGEKVRVVSVGDVSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAV 694 (851)
T ss_pred HHHhCCceEEEEeCHHHHHhcchhhhcCCCCCCeEEEEEECCeeccCCCCCccCChhhCeEEEEEEEeEecCCeEEEEEE
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEE
Q 002252 760 AGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLV 839 (947)
Q Consensus 760 ~G~~A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~~l~~~~~~~~~~~~~~vv~ 839 (947)
||.+|++++++.++.+++++..|+++++++++++++|++++++++|++++|+++++...++++.+.++.+ +++++++
T Consensus 695 ~G~~A~~~~~~~~~~l~~l~~~L~~~~~~i~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~---~~~~~i~ 771 (851)
T TIGR00344 695 TGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERFFEEWKALQKELESLKLKIADQKIDELKDKAETI---NGVKVLV 771 (851)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---CCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999988777777 8899999
Q ss_pred EEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceee
Q 002252 840 ESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQA 919 (947)
Q Consensus 840 ~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQG 919 (947)
..+++.+++.|+.+++.|+++.++ .++++++ ..++++.+++++++++++++++|++|++++++.+||||||+|.+|||
T Consensus 772 ~~~~~~d~~~lr~la~~l~~~~~~-~vvll~~-~~~~k~~~v~~~~~~~~~~~~~A~~lvk~~~~~~gGkGGG~~~~AQg 849 (851)
T TIGR00344 772 EVVDAKDMKSLKTMADRLKSKLGS-AIYVLAS-FANGKVKLVCGVSNDVLNKGIKAGELINQIAQVLGGKGGGRPDLAQA 849 (851)
T ss_pred EEccCCCHHHHHHHHHHHHhhcCC-eEEEEEE-cCCCeEEEEEEEChhHhhcCCCHHHHHHHHHHHcCCCCCCcHHhccc
Confidence 888888999999999999988765 4677766 66889999999998887777999999999999999999999999999
Q ss_pred cc
Q 002252 920 GG 921 (947)
Q Consensus 920 ~g 921 (947)
+|
T Consensus 850 gg 851 (851)
T TIGR00344 850 GG 851 (851)
T ss_pred CC
Confidence 85
No 4
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.1e-238 Score=2152.01 Aligned_cols=861 Identities=51% Similarity=0.867 Sum_probs=806.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCccccccccccCCccccCCCC
Q 002252 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTS 125 (947)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~ 125 (947)
+||++|||++||+||+++||+++||||||| +|||||||||||+||||||+|+++||++|+||||||||+|||||||+|+
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~nDld~VG~t~ 80 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIRTNDLENVGYTA 80 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccccchhhccCCC
Confidence 489999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCC
Q 002252 126 RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (947)
Q Consensus 126 rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G 205 (947)
|||||||||||||||||||+|||+|||||||++|||||+|||||||.+|+||++||++.+|||++||++++.+||||+||
T Consensus 81 rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~i~~~~~~dNfW~~G 160 (865)
T PRK00252 81 RHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYEDDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMG 160 (865)
T ss_pred CchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcCCCHHHHHHHHhccCCCHHHeecCCccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEeecCCCCCCCCCC--CCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCC
Q 002252 206 ATGPCGPCSEIYYDFHPDRGCSDVD--LGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283 (947)
Q Consensus 206 ~~GpcGpcsEi~~d~g~~~~~~~~~--~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ 283 (947)
+|||||||||||||||+.++++.+. ..|++|||||||+|||||||+++|+|.|||+||||||||||||+|||||++||
T Consensus 161 ~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDTG~GlER~~~ilq~~~sn 240 (865)
T PRK00252 161 DTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSN 240 (865)
T ss_pred CCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCc
Confidence 9999999999999999998654433 36889999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHhCCCccCCccccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCC
Q 002252 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGD 363 (947)
Q Consensus 284 ydtdlf~p~i~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~~~ 363 (947)
||||+|.|||+.|++++|++|+ .+++|||||||+||++|||+||++|||+|||||||||||||+|+++.||++.|
T Consensus 241 ydtd~f~~~i~~i~~~~~~~y~-----~~~a~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~~~ 315 (865)
T PRK00252 241 YETDLFRPLIKAIEELTGVKYE-----DDVSFRVIADHIRAVAFLIADGVLPSNEGRGYVLRRILRRAVRHGRLLGIKEP 315 (865)
T ss_pred chhhhHHHHHHHHHHHhCCCCC-----CCceEEEEcchHHHHHHHHccCcccCCCCcchHHHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999985 35799999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchH
Q 002252 364 GRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQ 443 (947)
Q Consensus 364 ~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~~g~~~~l~g~ 443 (947)
||++||+.+++.|++.||||.++++.|++||..||++|.+||++|.++|+++++ +.++ + ++|||+
T Consensus 316 --------~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~----~~~~-~--~~l~g~ 380 (865)
T PRK00252 316 --------FLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALA----KLKA-G--KVLSGE 380 (865)
T ss_pred --------HHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccC-C--CccCHH
Confidence 999999999999999999999999999999999999999999999999999997 4322 2 479999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCcccccccccceEE
Q 002252 444 DAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAI 523 (947)
Q Consensus 444 ~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~~~t~f~gY~~~~~~a~ 523 (947)
+||+||||||||+|||++||+++|++||+++|+++|++||++|++.++.... ......+.... +|+|+||+..+++|+
T Consensus 381 ~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~-~t~f~~Y~~~~~~a~ 458 (865)
T PRK00252 381 DAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD-YNALEELLDDL-ATEFVGYDTLEAEAK 458 (865)
T ss_pred HHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc-hhHHHHHhhcC-CCeeeeeeeccccEE
Confidence 9999999999999999999999999999999999999999999876533210 01112232222 689999999999999
Q ss_pred EEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEecCCEEEEEEEeecccc
Q 002252 524 VESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVL 603 (947)
Q Consensus 524 Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l 603 (947)
|++++.+++.++++.+|+.++|+||+|+|||||||||+|+|+|.. +. .++|.+|++..+|.++|++...++++
T Consensus 459 v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~------~~~V~~v~~~~~g~i~H~~~~~~~~l 531 (865)
T PRK00252 459 VLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GG------VFEVTDTQKPPNGLIVHRGKVEEGEL 531 (865)
T ss_pred EEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-Cc------EEEEEEEEEccCCEEEEEEEeccCCC
Confidence 999998888898888899999999999999999999999999987 44 79999999964699999997656778
Q ss_pred CCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHc
Q 002252 604 EVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 683 (947)
Q Consensus 604 ~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~ 683 (947)
++|++|.+.|||+||+++|++|||+|||++||+++||.++.|.|++++++++||||++++++|++++.+||+.||++|++
T Consensus 532 ~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel~~IE~~vN~lI~~ 611 (865)
T PRK00252 532 KVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRE 611 (865)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCeEEEEcCHHHHHHhccccccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeeccccceEEEEEEecHH
Q 002252 684 ANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEA 763 (947)
Q Consensus 684 nlpV~~~~~~~eEA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~~v~G~~ 763 (947)
|+||++.+++++||++.+++++|+++|++.||||+|+++|.++||||||.||||||.|+|++.+++++|++||+|+||.+
T Consensus 612 n~pV~~~~~~~~eA~~~~~~~~~~~~y~~~VRVV~Ig~~d~~~CgGTHV~nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~ 691 (865)
T PRK00252 612 NLPVETEEMSIEEAKKMGAMALFGEKYGDEVRVVSIGDFSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEA 691 (865)
T ss_pred CCCeEEEEeCHHHHHhCCchhhccccCCCeEEEEEECCceeeCCCCCccCCcccCeEEEEEEEeeecCCeEEEEEEECHH
Confidence 99999999999999998888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEEEEec
Q 002252 764 FIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMD 843 (947)
Q Consensus 764 A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~~l~~~~~~~~~~~~~~vv~~~~~ 843 (947)
|++++++.+++++++++.|+++++++++++++|++++++++|++++++++++...++++.+++..+ ++.++++..++
T Consensus 692 A~~~~~~~~~~l~~~~~~l~~~~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~i---~~~~~vv~~~~ 768 (865)
T PRK00252 692 ALEYLNEQEALLKELAALLKAKPSELPERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEV---NGVKVLAAQVE 768 (865)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc---CCeEEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999988776666 78888888888
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCC
Q 002252 844 DMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRK 923 (947)
Q Consensus 844 ~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQG~g~~ 923 (947)
+.+++.|+.+++.++++.++ .++++++ ..++++.+++++++++.+++++|++|++++++.+||||||++.+|||++++
T Consensus 769 ~~d~~~L~~la~~l~~~~~~-~vvll~~-~~~~k~~~vv~v~~~~~~~gl~A~~l~k~l~~~lgGkGGGk~~~AQGgg~~ 846 (865)
T PRK00252 769 GVDAKALRTLADDLKDKLGS-GVVVLAT-VEDGKVSLVVAVTKDLTDKGLKAGDLVKELAKIVGGKGGGRPDMAQAGGKD 846 (865)
T ss_pred CCCHHHHHHHHHHHHhhcCC-eEEEEEE-ccCCeEEEEEEEChhHhhcCcCHHHHHHHHHHhcCCCCCCcHHHeeeCCCC
Confidence 88999999999999888665 3666665 557788899998888777789999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHH
Q 002252 924 PENLSIALEKARADLVSV 941 (947)
Q Consensus 924 ~~~l~~al~~~~~~l~~~ 941 (947)
+++++++++.+.+++++.
T Consensus 847 ~~~l~~al~~a~~~l~~~ 864 (865)
T PRK00252 847 PAKLDEALAAVKEWLAAK 864 (865)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999988654
No 5
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-222 Score=1867.24 Aligned_cols=858 Identities=39% Similarity=0.650 Sum_probs=751.2
Q ss_pred CCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCcccccccccc----CCccccC
Q 002252 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVG 122 (947)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~----nDldnVG 122 (947)
||++|||++||+||+++.|++|+|||||| +||||||+|||||||||+|||+ -.+++|++|+|||||+ ||||+||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt-~a~lkRa~NsQKCIRAGGKHNDLdDVG 80 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT-MAKLKRAANSQKCIRAGGKHNDLDDVG 80 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc-hhhhHhhhhhhhHHhccCCcCChhHhc
Confidence 78999999999999999999999999999 9999999999999999999998 6689999999999999 9999999
Q ss_pred CCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCC--------hHHHHHHHHHhcCCCCCcccc
Q 002252 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYED--------DDEAFEIWNKEVGVPVEHIKR 194 (947)
Q Consensus 123 ~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~--------D~e~~~iW~~~~g~~~~~I~~ 194 (947)
+|.|||||||||||||||||||+|||.|||||||++||||++|||||||++ |.||++||++ +|+|++||++
T Consensus 81 kD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~-~Gvp~srILp 159 (895)
T KOG0188|consen 81 KDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNE-LGVPDSRILP 159 (895)
T ss_pred hhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHH-cCCChhhccC
Confidence 999999999999999999999999999999999999999999999999996 8899999998 7999999999
Q ss_pred cCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHH
Q 002252 195 MGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIA 274 (947)
Q Consensus 195 ~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~ 274 (947)
++++||||+||+||||||||||||||.++++.....+.|++.++||||||||||||++||++.|||+||||||||||||+
T Consensus 160 ~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfERLv 239 (895)
T KOG0188|consen 160 FGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFERLV 239 (895)
T ss_pred CccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCHHHHH
Confidence 99999999999999999999999999988776555568999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCccccccHHHHHHHHHHhCCCcc-CCccccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHH
Q 002252 275 RILQKVPNNYETDLIFPIIKKASELANVSYA-QSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVR 353 (947)
Q Consensus 275 ~vlqg~~s~ydtdlf~p~i~~i~~~~~~~y~-~~~~~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r 353 (947)
+|||++.||||||+|.||+++|++.++.+|. ++.+.+|++|||+|||+||++++|+||.+|+|+|||||||||||||+|
T Consensus 240 sVlQnk~SNYDTDlFtPif~aiq~~~~~~YtG~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvLRRILRRavr 319 (895)
T KOG0188|consen 240 SVLQNKTSNYDTDLFTPIFEAIQEGTGARYTGEDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVLRRILRRAVR 319 (895)
T ss_pred HHHhcccccccchhhHHHHHHHHHhcCCCccCCccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHHHHHHHHHHH
Confidence 9999999999999999999999999999996 455589999999999999999999999999999999999999999999
Q ss_pred HHHH-hCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002252 354 TGRL-LGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTR 432 (947)
Q Consensus 354 ~~~~-lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~ 432 (947)
|++. ||++.. ||.+|||+|++.|+++||||+...+.|.++|..||+.|++||++|.++|++.+. +++
T Consensus 320 ya~e~l~~~~g--------~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~----~~~ 387 (895)
T KOG0188|consen 320 YAHEKLNAPPG--------FFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVAR----ELG 387 (895)
T ss_pred HHHHHhCCCcc--------hhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH----hcC
Confidence 9986 999988 999999999999999999999999999999999999999999999999999998 655
Q ss_pred cCCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCc-
Q 002252 433 ESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTE- 511 (947)
Q Consensus 433 ~~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~~~t~- 511 (947)
++ ++|||+++|.||||||||+|+|++||+|+|++||+++|+++.++.+++|+++..... .. ....+.+-+|||+
T Consensus 388 ~s---~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~-~i-~ldvl~el~p~TdD 462 (895)
T KOG0188|consen 388 SS---KTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKL-SI-DLDVLSELVPPTDD 462 (895)
T ss_pred CC---CcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCC-cc-cHHHHHhhCCCCCC
Confidence 43 689999999999999999999999999999999999999999999999987654321 11 1122333368874
Q ss_pred cccc-ccccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEecCC
Q 002252 512 FLGY-DTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGS 590 (947)
Q Consensus 512 f~gY-~~~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g 590 (947)
...| ....++++|+++..++..+++...|+++.|+||+|+||+|.|||.+|+|.|...+.. .. .+.|..++- +|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~--~~-~fnV~~~~~--gg 537 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDE--DF-VFNVKRVQV--GG 537 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCc--cc-eeehhhccc--CC
Confidence 4467 667899999999999999999999999999999999999999999999999987641 11 566666655 69
Q ss_pred EEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHH
Q 002252 591 VFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTEL 670 (947)
Q Consensus 591 ~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel 670 (947)
+|+|++.. .+.+.+|++|.+.+|.+||+.+|++|||||||++||++++ ..+.|.||+|.||++||||++..++|.+++
T Consensus 538 ~vvh~g~l-~~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql 615 (895)
T KOG0188|consen 538 YVVHIGVL-EGDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQL 615 (895)
T ss_pred EEEEEeee-ccccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHH
Confidence 99999987 5889999999999999999999999999999999999999 558899999999999999999888999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCHHHHHHh-ccccccCCCCCCcEEEEEECC---ccccccCccccccccccceEEEEee
Q 002252 671 EEIERLINGWIGDANLLQTKVMALDDAKRA-GAIAMFGEKYGEQVRVVEVPG---VSMELCGGTHVNNTAEIRAFKIISE 746 (947)
Q Consensus 671 ~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~-~~~~l~~eky~~~VRVV~Igg---~d~e~CgGTHV~nTgeIg~~kIl~~ 746 (947)
..+|+.||++|.++.+|....+++++|++. ++++.|+|.|+++||||.+|. .++++|||||+.|||+||.|.|+++
T Consensus 616 ~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se 695 (895)
T KOG0188|consen 616 KKVEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSE 695 (895)
T ss_pred HHHHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEeccccccceeecCCcccccccccceEEEech
Confidence 999999999999999999999999999997 667789999999999999984 7999999999999999999999999
Q ss_pred eccccceEEEEEEecHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q 002252 747 QGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRV-------------EGLLEDLRTARNEVANLRAK 813 (947)
Q Consensus 747 ~~~~~Gv~RI~~v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v-------------~~L~~e~k~l~k~l~~L~~~ 813 (947)
+++++|+|||.+|||..|.+.++..+.+...+...=.+.+.++.+-. .++.+.++.++|+++.+.+.
T Consensus 696 ~~iakgirRivavTG~eA~~a~~~a~~~~~~~~~~~~~~~kei~~l~~~~~~a~iP~~~k~~~~~~~k~~~K~~~d~~ra 775 (895)
T KOG0188|consen 696 EGIAKGIRRIVAVTGKEAQEALRLAEDLDKDLRKTDKALEKEIQELGENLDHAVIPYWQKDEIRELLKKLQKRMDDLSRA 775 (895)
T ss_pred hhhhhceeEEEEeccHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887766321111111111111111111 13344455555555555444
Q ss_pred HHHHHHhhhhccceeecc-cCCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhccc
Q 002252 814 AAVYKASTISSKAFTVGT-SNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLG 892 (947)
Q Consensus 814 la~~~a~~l~~~~~~~~~-~~~~~vv~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~ 892 (947)
+.....++.++.+.+..+ ..+.+++++.++. + ..++...++. .++|++....+++.+.|.+++.++++|
T Consensus 776 ~~~~~qk~~l~~~~~~~~~~~~~~~~v~~~~~-~--------~~~k~~~~~~-~i~llsd~~~gkv~~~c~V~~~a~~~g 845 (895)
T KOG0188|consen 776 LKAAVQKEVLEEAKQLKESNPNQPLLVHYIES-S--------KLLKKQAPDK-SIMLLSDDESGKVTCLCQVPQNAANKG 845 (895)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCEEEEEecc-h--------HHHHhcCCCC-eeEEeccCCCCeEEEEEeecHHHhhcc
Confidence 444433333332222111 2455778877754 2 3445555553 555555456679999999999999999
Q ss_pred ccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHHHHHHH
Q 002252 893 IQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVSV 941 (947)
Q Consensus 893 i~a~~l~k~l~~~~gGkGGGk~~~AQG~g~~~~~l~~al~~~~~~l~~~ 941 (947)
++|.+|+..++..+||||||++..+||.|.+++.|++|++.+..+.+..
T Consensus 846 l~a~~w~q~v~~~~ggk~ggK~~~~q~~g~~~~~l~~av~~a~~~a~~~ 894 (895)
T KOG0188|consen 846 LKASEWVQSVSGTMGGKGGGKGVLAQATGNNVGCLDEAVSLATEFALLK 894 (895)
T ss_pred CCHHHHHHHHHHhhCCccCCccchhhhhCCcHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999998876543
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=4.4e-217 Score=1962.20 Aligned_cols=820 Identities=33% Similarity=0.543 Sum_probs=753.4
Q ss_pred CCcccccceeeecCCCCccccCccCCc----CCCchhhcccCCCCCCCHHHHHHHHHHHHhhCCCeeeCCcCCcCC-CCc
Q 002252 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPE-DPT 80 (947)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~-d~t 80 (947)
+.|-.||.+|||.+.-|+.|.+.+-+. +.|+. .++||++|||++||+||+++||+++|||||||+ |++
T Consensus 17 ~~c~~c~~~fwt~~~~r~~cgd~~c~~y~fi~~~~~-------~~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dD 89 (902)
T TIGR03683 17 KQCQVCGSYFWTLDPERETCGDAPCDEYSFIGNPIF-------SKKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDD 89 (902)
T ss_pred eECcccCCccccCCCCcCCCCCCCCccceecCCCCc-------CCCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCC
Confidence 579999999999999999999976664 33332 244999999999999999999999999999993 667
Q ss_pred cceecccccccccccc-ccCCCCCCCccccccccccCCccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHh
Q 002252 81 VLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEF 154 (947)
Q Consensus 81 llftnAGm~qfk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfg-----dYfK~eai~~awe~ 154 (947)
||||||||+||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||.|||||
T Consensus 90 llft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~ 169 (902)
T TIGR03683 90 VYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRLNDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEF 169 (902)
T ss_pred eeEeecchhhhhHhhcCCCCCCCCCCceeccccccccccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCC
Q 002252 155 STVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDD 234 (947)
Q Consensus 155 lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~ 234 (947)
| ++||||++||. .+||||+|| ||||||||||| +|
T Consensus 170 l-~~lgi~~~~i~-----------------------------~~enfW~~G--GpcGPcsEi~~-~g------------- 203 (902)
T TIGR03683 170 L-EELGIDPEEIT-----------------------------YKESPWEGG--GNAGPCFEVIV-GG------------- 203 (902)
T ss_pred H-HHcCCCHHHee-----------------------------ecCCccCCC--CCCCCceeeee-Cc-------------
Confidence 9 99999998862 169999999 99999999999 32
Q ss_pred CceEEEeeeecccccccC-------CCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCC
Q 002252 235 TRFIEFYNLVFMQYNKKD-------DGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQS 307 (947)
Q Consensus 235 ~r~lEiwNlVFmq~~~~~-------~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ydtdlf~p~i~~i~~~~~~~y~~~ 307 (947)
|||||||||||+|++ ||+|+|||+||||||||||||+|||||+|||||| +|.|||+.|++++|++|..+
T Consensus 204 ---lEiwnlVFmq~~~~~~~~~~~~~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~ 279 (902)
T TIGR03683 204 ---LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDE 279 (902)
T ss_pred ---EeeeeeeeeeeccccccccccCCCeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccc
Confidence 999999999999998 8999999999999999999999999999999999 99999999999999988532
Q ss_pred c---------------ccc---------------------c-----cceEEechhhhHHHHhhcCCCccCCCCCchHHHH
Q 002252 308 N---------------DRT---------------------N-----LNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRR 346 (947)
Q Consensus 308 ~---------------~~~---------------------~-----~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRr 346 (947)
. +.. + .++|+||||+||++|||+||++|||+||||||||
T Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRr 359 (902)
T TIGR03683 280 EILAENARLAGMMDIEDEEDLRELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARL 359 (902)
T ss_pred hhhhhhhhhccccCccccchhhHHhhhhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHH
Confidence 0 000 2 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 347 LIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLAD 426 (947)
Q Consensus 347 ilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~ 426 (947)
|||||+|++++||++.| |++||+.+++.|++.||||.++++.|++||+.||++|.+||++|.++|+++++
T Consensus 360 ilRRa~r~~~~lg~~~~---------l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~- 429 (902)
T TIGR03683 360 VIRRTLRLMRELGLDIP---------LSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLK- 429 (902)
T ss_pred HHHHHHHHHHHhCCCcc---------HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 99999999999999988 99999999999999999999999999999999999999999999999999986
Q ss_pred HhhhhhcCCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeChh-hHHHHHHHHHHHHHHhhcccccccCchhHhhh
Q 002252 427 ALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDSADLAE 505 (947)
Q Consensus 427 ~~~~~~~~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~ 505 (947)
+ + ++|||++||+||||||||+|||++||+++|++||++ +|+++|++||++|+++... . . .......
T Consensus 430 ---~----~--~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~vd~~~~F~~~~~~~~~~~~~~~~~-~--~-~~~~~~~ 496 (902)
T TIGR03683 430 ---T----K--KEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNFYSIVAERHEKEEKEEEL-P--K-DYEERAK 496 (902)
T ss_pred ---c----C--CcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcccCCccHHHHHHHHHHHHHhcccc-c--c-chhHHHh
Confidence 2 2 479999999999999999999999999999999998 9999999999999875321 0 1 1112223
Q ss_pred hCCCCccccccc---ccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEE
Q 002252 506 KIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVK 582 (947)
Q Consensus 506 ~~~~t~f~gY~~---~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~ 582 (947)
.+++|+|+||++ .+++|+|+++.. .+|+||+|+|||||||||+|+|+|..++. .++|.
T Consensus 497 ~~~~T~~l~y~~~~~~e~~a~Vl~i~~-------------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~------~~~V~ 557 (902)
T TIGR03683 497 DLPETRRLFYEDPTMREFEAKVLGVFD-------------NYVVLDQTAFYPEGGGQPADTGYLITNGG------KIRVV 557 (902)
T ss_pred cCCCceEeccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCc------EEEEE
Confidence 478999999999 688999999973 26999999999999999999999987765 79999
Q ss_pred EEEEecCCEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCC
Q 002252 583 DVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFH 662 (947)
Q Consensus 583 dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~ 662 (947)
+|++. +|.++|++. .+.+++|++|.++|||+||+++|++|||+|||++||+++||.|++|+|++++++++||||+|+
T Consensus 558 dv~k~-~g~i~H~~~--~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~ 634 (902)
T TIGR03683 558 DVQKV-GGVIVHKVD--GEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHY 634 (902)
T ss_pred EEEEE-CCEEEEEeC--CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCC
Confidence 99997 899999996 234889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhcccccc--CCCCCCcEEEEEECCccccccCccccccccccce
Q 002252 663 RPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRA 740 (947)
Q Consensus 663 ~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~ 740 (947)
+++|++++.+||+.||++|++|+||++.+++++||++.+..+++ +++|++.||||+|+++|.++||||||.||||||.
T Consensus 635 ~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~ 714 (902)
T TIGR03683 635 KRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGP 714 (902)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCce
Confidence 99999999999999999999999999999999999998877777 5678999999999999999999999999999999
Q ss_pred EEEEeeeccccceEEEEEEecHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002252 741 FKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKAS 820 (947)
Q Consensus 741 ~kIl~~~~~~~Gv~RI~~v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~ 820 (947)
|+|++++++++|++||+|+||.+|++++++.++++++++..|+++++++++++++|++++|+++|++++|+++++...++
T Consensus 715 ~kI~~~~~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a~~L~~~~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~~~ 794 (902)
T TIGR03683 715 IKILKTERIQDGVERIEFAAGEAALEYIQELEDLLRESSDILKVPPEQLPETVKRFFEEWKEQRKEIERLKKKLAELKIY 794 (902)
T ss_pred EEEEEEEEecCCeEEEEEEEChHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeecccCCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHH
Q 002252 821 TISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIG 900 (947)
Q Consensus 821 ~l~~~~~~~~~~~~~~vv~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k 900 (947)
.+.+++..+ +++++++..+ +.|++.|+.+++.|+++ + .+++|++ ..++++.+++++++++ +++|++|++
T Consensus 795 ~l~~~~~~i---~g~~vi~~~~-~~d~~~lr~la~~l~~~--~-~vvvl~~-~~~~k~~~v~~~~~~~---~~~A~~lvk 863 (902)
T TIGR03683 795 ELISEAERI---GGVEVIVELV-DADMDELQEIAEKLAEK--G-LVVVLVS-GGGGNGRVVISSGEKA---GVDAGELVR 863 (902)
T ss_pred HHHhhheec---CCEEEEEEEe-CCCHHHHHHHHHHHhcC--C-cEEEEEE-ccCCcEEEEEEEChhH---hhhHHHHHH
Confidence 988777777 8889988877 67999999999999765 3 3667766 5567888888877654 589999999
Q ss_pred HHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHHHH
Q 002252 901 PIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADL 938 (947)
Q Consensus 901 ~l~~~~gGkGGGk~~~AQG~g~~~~~l~~al~~~~~~l 938 (947)
++++.+||||||+|.+|||+++++++++++++.+.+.|
T Consensus 864 ~l~~~lgGkGGGk~~~AQGgg~~~~~l~~al~~~~~~l 901 (902)
T TIGR03683 864 EIAKELGGGGGGKPDLAQGGGPDDLKIDEALEKIKSFL 901 (902)
T ss_pred HHHHhcCCCcCCchhheeecCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988876
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-216 Score=1956.18 Aligned_cols=822 Identities=32% Similarity=0.524 Sum_probs=754.7
Q ss_pred CCcccccceeeecCCCCccccCccCCc----CCCchhhcccCCCCCCCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCc
Q 002252 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPT 80 (947)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~t 80 (947)
+.|-.||.+|||.+.-|+.|.+.+-+. +.|+.. ++||++|||++||+||++|||+++||||||| .+++
T Consensus 20 ~~c~~cg~~fwt~~~~r~~cgd~pc~~y~fi~~~~~~-------~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dD 92 (900)
T PRK13902 20 KQCKKCGSYFWTLDPDRETCGDAPCDEYSFIGNPIFS-------KKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDD 92 (900)
T ss_pred eECCccCCceecCCCCcCCCCCCCCccceecCCCCcC-------CCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCC
Confidence 579999999999999999999976665 444433 3399999999999999999999999999999 3667
Q ss_pred cceecccccccccccc-ccCCCCCCCccccccccccCCccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHh
Q 002252 81 VLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEF 154 (947)
Q Consensus 81 llftnAGm~qfk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfg-----dYfK~eai~~awe~ 154 (947)
||||||||+||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||+|||||
T Consensus 93 llft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~ 172 (900)
T PRK13902 93 VYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRLNDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEF 172 (900)
T ss_pred eeeeecchhhhhHHhcCCCCCCCCCCceecccccchhhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCC
Q 002252 155 STVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDD 234 (947)
Q Consensus 155 lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~ 234 (947)
||++|||||+||. + +||||+|| ||||||||||| +|
T Consensus 173 lt~~lgi~~~~I~--------------------------~---~enfW~~G--GpcGPcsEi~~-~g------------- 207 (900)
T PRK13902 173 FTKELGIDPEEIT--------------------------F---KESWWEGG--GNAGPCFEVLV-RG------------- 207 (900)
T ss_pred HHhhcCCCHHHee--------------------------e---cccccCCC--CCCCCceeeee-CC-------------
Confidence 9999999998752 1 69999999 99999999999 32
Q ss_pred CceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCccC--------
Q 002252 235 TRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQ-------- 306 (947)
Q Consensus 235 ~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ydtdlf~p~i~~i~~~~~~~y~~-------- 306 (947)
|||||||||||+|+ +|+|+|||+||||||||||||+||+||+|||||| +|.|||+.|++++|++|+.
T Consensus 208 ---lEiwnlVFmqy~~~-~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~ 282 (900)
T PRK13902 208 ---LELATLVFMQYKKD-GNRYVEMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAA 282 (900)
T ss_pred ---EEeeeeeeeEEEcC-CCeeeeCCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhh
Confidence 99999999999998 9999999999999999999999999999999999 9999999999999999853
Q ss_pred ------C--c-c------------------------ccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHH
Q 002252 307 ------S--N-D------------------------RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVR 353 (947)
Q Consensus 307 ------~--~-~------------------------~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r 353 (947)
+ + + ....++|+||||+||++|||+||++|||+|||||||||||||+|
T Consensus 283 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r 362 (900)
T PRK13902 283 RLAGLMDIEEIEDLRSLRQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLR 362 (900)
T ss_pred hhcccCCcccchhHHHHHHHHHhhcccchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHH
Confidence 1 1 0 01269999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 002252 354 TGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRE 433 (947)
Q Consensus 354 ~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~ 433 (947)
++++||++.| |++||+.+++.|++.||||.++++.|++||..||++|.+||++|.++|+++++ +.
T Consensus 363 ~~~~lg~~~~---------l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~----~~-- 427 (900)
T PRK13902 363 LLDELGLDVP---------LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAK----KK-- 427 (900)
T ss_pred HHHHhCCCcc---------HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc--
Confidence 9999999988 99999999999999999999999999999999999999999999999999997 32
Q ss_pred CCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeCh-hhHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCcc
Q 002252 434 SGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDM-KGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEF 512 (947)
Q Consensus 434 ~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~-~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~~~t~f 512 (947)
+.|||++||+||||||||+|||++||+++|++||+ ++|+++|++||++|+++... ... .......+++|+|
T Consensus 428 ----~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~T~~ 499 (900)
T PRK13902 428 ----EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEKAEEEEEE--PVV--EEERLKDLPETEK 499 (900)
T ss_pred ----CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHHHHHHHHHHHHhhcccc--ccc--hhhHhhcCCCceE
Confidence 36999999999999999999999999999999999 89999999999999874211 011 1112234789999
Q ss_pred ccccc---ccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEecC
Q 002252 513 LGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLG 589 (947)
Q Consensus 513 ~gY~~---~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~ 589 (947)
+||++ .+++|+|+++.. .+|+||+|+|||||||||+|+|+|..++. .++|.+|++. +
T Consensus 500 l~y~~~~~~~~~a~Vl~i~~-------------~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~------~~~V~dv~k~-~ 559 (900)
T PRK13902 500 LFYEDPYMREFEAKVLGVID-------------NYVVLDQTAFYPEGGGQPADTGVLIVDGK------GYKVVDVQKV-G 559 (900)
T ss_pred eccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCc------EEEEEEEEEE-C
Confidence 99999 688999999983 27999999999999999999999987665 7999999998 8
Q ss_pred CEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHH
Q 002252 590 SVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTE 669 (947)
Q Consensus 590 g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee 669 (947)
|.++|++.. +.+.+|++|.++|||+||+++|++|||+|||++||+++||.|++|+|++++++++||||+|++++|+++
T Consensus 560 g~i~H~~~~--~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee 637 (900)
T PRK13902 560 GVIVHVLEG--EPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREE 637 (900)
T ss_pred CEEEEEeCC--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHH
Confidence 999999853 445569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhcccccc--CCCCCCcEEEEEECCccccccCccccccccccceEEEEeee
Q 002252 670 LEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQ 747 (947)
Q Consensus 670 l~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~ 747 (947)
+.+||+.||++|++|+||++.+++++||++.+..+++ +++|++.||||+|+|+|.++||||||.||||||.|+|++++
T Consensus 638 l~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~e 717 (900)
T PRK13902 638 VKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKILKTE 717 (900)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEEEEEE
Confidence 9999999999999999999999999999998877777 67899999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEecHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccce
Q 002252 748 GIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAF 827 (947)
Q Consensus 748 ~~~~Gv~RI~~v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~~l~~~~~ 827 (947)
++++|++||+|+||.+|++++++.++.++++++.|+++++++++++++|++++++++|++++|+++++...++.+..++.
T Consensus 718 ~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a~~L~~~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~~ 797 (900)
T PRK13902 718 RIQDGVERLEFAAGDAAVEYIQELEDLLKEAAEILGVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKAE 797 (900)
T ss_pred EecCCeEEEEEEEChHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred eecccCCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcC
Q 002252 828 TVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCG 907 (947)
Q Consensus 828 ~~~~~~~~~vv~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~g 907 (947)
.+ +++++++..+ +.|++.|+.+++.|+++. + . +++++ .+++..+++++++++. ++|++|++++++.+|
T Consensus 798 ~~---~g~~~i~~~~-~~d~~~Lr~~a~~l~~~~-~-~-vvl~~--~~~k~~~v~~~~~~~~---~~a~~lvk~l~~~~g 865 (900)
T PRK13902 798 EV---GGVKVVVEEV-DADEDELRKIANELAKEG-K-V-ALVVL--GNGGGQIVVGVGEDVG---VNAGEIVRELAKVLG 865 (900)
T ss_pred Ee---CCEEEEEEEe-CCCHHHHHHHHHHHHhcC-C-e-EEEEE--cCCcEEEEEEEChhhh---hhHHHHHHHHHHhcC
Confidence 77 8899998888 779999999999998874 3 3 55554 4567788888777642 899999999999999
Q ss_pred CCCCCcccceeeccCCcccHHHHHHHHHHHHHHH
Q 002252 908 GGGGGRPNFAQAGGRKPENLSIALEKARADLVSV 941 (947)
Q Consensus 908 GkGGGk~~~AQG~g~~~~~l~~al~~~~~~l~~~ 941 (947)
|||||+|.+|||+|+++++++++++.+.+.|++.
T Consensus 866 GkGGGk~~~AQGgg~~~~~l~~al~~~~~~l~~~ 899 (900)
T PRK13902 866 GKGGGKPDLAQGGGPDPKKKEEALEAAKEVLKEA 899 (900)
T ss_pred CCCCCchHheeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988654
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-192 Score=1663.38 Aligned_cols=578 Identities=40% Similarity=0.751 Sum_probs=545.2
Q ss_pred CCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCccccccccccCCccccCCCCC
Q 002252 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSR 126 (947)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~r 126 (947)
||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+|++|||||+||||||| |+|
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~~Dle~VG-~~r 79 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRTGDIDEVG-DLS 79 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCccccccccccccccccC-CCc
Confidence 78999999999999999999999999999 7999999999999999999999999999999999999999999999 899
Q ss_pred cccccccccCcccCcccHHHHHHHHHHhhhcc--cCCCCCceEEEEeCC------hHHHHHHHHHhcCCCCCcccccCCC
Q 002252 127 HHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGLPANRLWISVYED------DDEAFEIWNKEVGVPVEHIKRMGAD 198 (947)
Q Consensus 127 HhTfFEMlGn~SfgdYfK~eai~~awe~lt~~--l~l~~~~l~vt~~~~------D~e~~~iW~~~~g~~~~~I~~~~~~ 198 (947)
||||||||||||||||||+|||.|||||||++ |||||+|||||||++ |+||++||++ +|||++||++++.+
T Consensus 80 HhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~~~~D~Ea~~iW~~-~g~~~~rI~~~~~~ 158 (594)
T PRK01584 80 HLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEEIPRDEETASVWES-LGIPKDRIFYLSRE 158 (594)
T ss_pred chhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCCCCCCHHHHHHHHH-cCCCHHHeeeCCCC
Confidence 99999999999999999999999999999998 999999999999998 9999999999 99999999999999
Q ss_pred CCcc-cCCCCCCCCCceEEEeecCCCCCCCCC--CCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHH
Q 002252 199 DNFW-NSGATGPCGPCSEIYYDFHPDRGCSDV--DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIAR 275 (947)
Q Consensus 199 dnfW-~~G~~GpcGpcsEi~~d~g~~~~~~~~--~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~ 275 (947)
|||| +||++||||||||||||+|++ ++... +.++|+|||||||+|||||||++||+|+|||+||||||||||||+|
T Consensus 159 dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGLERl~~ 237 (594)
T PRK01584 159 HNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIERTIA 237 (594)
T ss_pred CCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCceeCCcCHHHHHH
Confidence 9999 899999999999999999987 43221 1247899999999999999999999999999999999999999999
Q ss_pred HHhCCCCCccccccHHHHHHHHHHhCCCccCCccccccceEEechhhhHHHHhhcC--CCccCCCCCchHHHHHHHHHHH
Q 002252 276 ILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSD--GVFPSNIGRGYVVRRLIRRAVR 353 (947)
Q Consensus 276 vlqg~~s~ydtdlf~p~i~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~~~~~i~D--G~~Psn~grgYvlRrilRRa~r 353 (947)
||||++||||||+|.|||++|++++|++|+.++ ..++|+||||||+||++|||+| |++|||+|||||||||||||+|
T Consensus 238 vlqg~~s~ydtdlf~pii~~i~~~~~~~y~~~~-~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN~grGYvlRrilRRa~r 316 (594)
T PRK01584 238 FLQGKSSVYDTEAFTPIIKRIEKISGKIYGQNE-EDDRSIRIIADHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIR 316 (594)
T ss_pred HHcCCCCccchhhhHHHHHHHHHHhCCCcCCCC-CCceeEEEEecHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999997543 4578999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 002252 354 TGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRE 433 (947)
Q Consensus 354 ~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~ 433 (947)
++++||++.| ||++||+.|++.|+++||||.++++.|++||+.||++|.+||++|+++|+++++ ++++
T Consensus 317 ~~~~lg~~~~--------fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~----~~~~ 384 (594)
T PRK01584 317 HAKKLGIESH--------FLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIP----NLGS 384 (594)
T ss_pred HHHHhCCCch--------hHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhcc
Confidence 9999999999 999999999999999999999999999999999999999999999999999998 5532
Q ss_pred CCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCccc
Q 002252 434 SGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFL 513 (947)
Q Consensus 434 ~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~~~t~f~ 513 (947)
+ ++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++. ..+|.
T Consensus 385 -~--~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~~------------------~~~f~ 443 (594)
T PRK01584 385 -S--KIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKGA------------------DKVFK 443 (594)
T ss_pred -C--CccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhcc------------------ccccc
Confidence 3 57999999999999999999999999999999999999999999998887520 00111
Q ss_pred ccccccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEecCCEEE
Q 002252 514 GYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFV 593 (947)
Q Consensus 514 gY~~~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~iv 593 (947)
||++|+|.
T Consensus 444 --------------------------------------------g~~~d~g~---------------------------- 451 (594)
T PRK01584 444 --------------------------------------------GGLADHSY---------------------------- 451 (594)
T ss_pred --------------------------------------------CCcCcccc----------------------------
Confidence 35666542
Q ss_pred EEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHH
Q 002252 594 HKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEI 673 (947)
Q Consensus 594 H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~I 673 (947)
.+|++|||+|||++||+++||.++.|.||+++++++||||++++++|++++.+|
T Consensus 452 --------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~I 505 (594)
T PRK01584 452 --------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKV 505 (594)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHHHHHH
Confidence 489999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHcCCCeEEEEcCHHHHHHhccccccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeeccccce
Q 002252 674 ERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGI 753 (947)
Q Consensus 674 E~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv 753 (947)
|+.||++|++|+||++.+++++||++.++.++|+++|++.||||+|+++|.++||||||.|||+||.|+|++++++++|+
T Consensus 506 E~~vNeiI~~n~pV~~~~~s~eEA~~~~~~~lf~e~y~~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~s~g~Gv 585 (594)
T PRK01584 506 EDIVNLQIKNDLSVKKEVMSLEEAREKGAMALFGEKYEDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQSSSSGV 585 (594)
T ss_pred HHHHHHHHHhCCCeEEEEcCHHHHHhcchhhhccccCCCcEEEEEECCeeeeCCCCCCCCCcccCceEEEEecccccCCe
Confidence 99999999999999999999999999888888988999999999999999999999999999999999999999999999
Q ss_pred EEEEEEe
Q 002252 754 RRIEAVA 760 (947)
Q Consensus 754 ~RI~~v~ 760 (947)
|||+|+.
T Consensus 586 rRI~av~ 592 (594)
T PRK01584 586 RRIRAIL 592 (594)
T ss_pred EEEEEEe
Confidence 9999985
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=1.3e-171 Score=1502.89 Aligned_cols=543 Identities=53% Similarity=0.901 Sum_probs=452.8
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccC-CCCCCCccccccccccC----CccccCCCC
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKV-PRQVPRAATSQRCIRTN----DVENVGRTS 125 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~-~p~~~r~~~~QkCiR~n----DldnVG~t~ 125 (947)
|||++||+||++|||+++||||||| +|||||||||||+||||||+|.+ +||++|+|++|||||++ ||||||+|+
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~~~r~~~~Q~CiR~~GkhnDld~VG~t~ 80 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPPANRLVSSQKCIRTGGKHNDLDNVGRTG 80 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--SSSCEEEEEEEE-EETTEECGGGTTTSS
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCCCCcccccceeeccCCCcchhhhcCCCc
Confidence 7999999999999999999999999 89999999999999999999998 99999999999999997 999999999
Q ss_pred CcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCC
Q 002252 126 RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (947)
Q Consensus 126 rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G 205 (947)
|||||||||||||||||||+|||.|||||||++|||||+|||||||.+|+||++||++++|+|++||++++.++|||+||
T Consensus 81 rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~d~ea~~~w~~~~g~~~~~i~~~~~~~nfw~~g 160 (552)
T PF01411_consen 81 RHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEWDGEAGEIWEKIVGGPEERILVFGKKDNFWEMG 160 (552)
T ss_dssp S--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECCECCCCCCCCECCTTECCCEEEE-CCEEEEESS
T ss_pred eEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCCchhHHHHHHHhcCCCHHHeEecCCCCceEECC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCCCCCceEEEeecCCCCCCCCC---CCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCC
Q 002252 206 ATGPCGPCSEIYYDFHPDRGCSDV---DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (947)
Q Consensus 206 ~~GpcGpcsEi~~d~g~~~~~~~~---~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s 282 (947)
++||||||||||||+|+++++..+ +.++++||+||||+|||||+|++||++.|||+++|||||||||++++|||++|
T Consensus 161 ~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmgler~~~~lq~~~s 240 (552)
T PF01411_consen 161 DTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMGLERLAAVLQGVRS 240 (552)
T ss_dssp TSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEEHHHHCHHHCCHCC
T ss_pred CCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCCcHHHHHHHhhhhh
Confidence 999999999999999999986332 33678999999999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHHHhCCCccCCccccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 002252 283 NYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 362 (947)
Q Consensus 283 ~ydtdlf~p~i~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~~ 362 (947)
||+||+|.|+++.++++++.+|.... ..++++|+||||+||++|||+||++|||+|||||||||||||+|++++||++.
T Consensus 241 ~~~tdlf~~i~~~i~~~~~~~y~~~~-~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYvlRriiRRa~r~~~~lg~~~ 319 (552)
T PF01411_consen 241 NYDTDLFMPIIEAIEELSGVPYKDEE-EIDVALRVIADHIRALTFAIADGVLPSNEGRGYVLRRIIRRAVRFGRKLGIEE 319 (552)
T ss_dssp HHHCHHTCHHHHHHHHHHC--TTSSC-CCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SS
T ss_pred hhchhhhhhHHHHHHHHcCCCccccc-ccccEEEEEcchhhceeeEecCCeeecccCCcchHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999996544 67889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccch
Q 002252 363 DGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSG 442 (947)
Q Consensus 363 ~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~~g~~~~l~g 442 (947)
| ||++||+.+++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ ++++ + ++|||
T Consensus 320 ~--------fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~----~~~~-~--~~lsg 384 (552)
T PF01411_consen 320 P--------FLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIK----KLKK-K--KELSG 384 (552)
T ss_dssp ----------HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHC-C--SEE-H
T ss_pred c--------chHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcc-c--cCCCh
Confidence 9 999999999999999999999999999999999999999999999999999998 6654 3 68999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCchhHhhhhCCCCcccccccccceE
Q 002252 443 QDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKA 522 (947)
Q Consensus 443 ~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~~~t~f~gY~~~~~~a 522 (947)
++||+||||||||+|||++||+++|++||+++|+++|++||++||++++.......+...+.+...+|+|+||+.++++|
T Consensus 385 e~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~~~~~~~~~~~l~~~teF~gYe~~~~~a 464 (552)
T PF01411_consen 385 EDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSSIEEDVSALAELPKTTEFVGYEYLECEA 464 (552)
T ss_dssp HHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH--------SSSTTTTCHHHEETCCCC------
T ss_pred HHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccchhhhHHHHhhhhcccccceeecccccc
Confidence 99999999999999999999999999999999999999999999877654220111111222211247899999999999
Q ss_pred EEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEecCCEEEEEEEeeccc
Q 002252 523 IVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGV 602 (947)
Q Consensus 523 ~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~ 602 (947)
+|++++.+++.+..+.+++..+||||+|||||||||||+|+|+|..++. .+.|.+|++. +|+++|++....+.
T Consensus 465 kVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~------~~~V~dv~k~-~g~i~H~~~~~~g~ 537 (552)
T PF01411_consen 465 KVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGG------EFEVTDVQKV-GGVILHIGEVESGS 537 (552)
T ss_dssp TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTE------EEEEEEEEEE-TTEEEEEESSG-GG
T ss_pred eEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecce------EEEEEEEEEE-CCEEEEEEeccCCC
Confidence 9999998888888887788889999999999999999999999988776 8999999999 69999999987788
Q ss_pred cCCCCEEEEEEcccc
Q 002252 603 LEVGREVEAIVDPKL 617 (947)
Q Consensus 603 l~~G~~V~~~VD~~r 617 (947)
+++|+.|.++|||+|
T Consensus 538 l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 538 LKVGDEVTAEVDWER 552 (552)
T ss_dssp --TTSEEEEEE-HHH
T ss_pred CCCCCEEEEEecCCC
Confidence 999999999999986
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=6.2e-110 Score=862.96 Aligned_cols=231 Identities=55% Similarity=1.051 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCccccccccccCCccccCCCCCcc
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHH 128 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t~rHh 128 (947)
++|||++||+||++|||+++||||||| +|||||||||||+||||||+|+++||++|+|++|||||+|||||||+|+|||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~~DienVG~t~rHh 80 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRAGDIDNVGKTGRHH 80 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCCCCceeeeeeceecCChhhccccccch
Confidence 479999999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCC
Q 002252 129 TFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208 (947)
Q Consensus 129 TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~G 208 (947)
||||||||||||||||+|||+|||||||++|||||+|||||||.+|+||++||.+.+|||++||++++.+||||+||++|
T Consensus 81 TfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~dde~~~~w~~~~g~~~~~i~~~~~~dNfW~~G~~G 160 (232)
T cd00673 81 TFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGDDEEEAIWWWKIGLPGIRIERIGFKDNFWEMGGNG 160 (232)
T ss_pred hhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCCCHHHHHHHHHhhCCCHHHeeeCCccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCC
Q 002252 209 PCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280 (947)
Q Consensus 209 pcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~ 280 (947)
|||||||||||+|+++++....++||+|||||||+|||||+|+++|+|.|||+||||||||||||+|||||+
T Consensus 161 PCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlERla~vlQg~ 232 (232)
T cd00673 161 PCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred CCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHHHHHHHHcCC
Confidence 999999999999999887654557899999999999999999999999999999999999999999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=1.3e-47 Score=404.77 Aligned_cols=231 Identities=34% Similarity=0.458 Sum_probs=205.1
Q ss_pred Cccccccc---ccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEE
Q 002252 510 TEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKK 586 (947)
Q Consensus 510 t~f~gY~~---~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k 586 (947)
|+.++|++ .+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|.+.++ ...|.++.+
T Consensus 2 T~~ly~~D~y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~------~~~~~~~~~ 62 (241)
T COG2872 2 TEKLYYDDSYLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGG------EYVVEDVTK 62 (241)
T ss_pred ccceeccccccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCc------eEEEEEEEe
Confidence 45566665 5778999999753 6999999999999999999999999888 889999999
Q ss_pred ecCCEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCC
Q 002252 587 SLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLL 666 (947)
Q Consensus 587 ~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt 666 (947)
. +..|+|++... ..+++|++|.+.|||+||+.+||+|||+|||++++.+.++. ...|.++.+++.|+||+.+. +
T Consensus 63 ~-~~~I~H~~~~~-~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~~--~~~g~~i~~d~~~iD~~~e~--~ 136 (241)
T COG2872 63 D-GEEIVHVLAEH-AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGA--LTTGFEIGEDYARIDFDGED--T 136 (241)
T ss_pred c-ceEEEEEecCc-ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhccccc--eeecceeccccccccccccc--c
Confidence 8 67899999854 55799999999999999999999999999999999999984 44699999999999999654 8
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhcccccc-C---CCCCCcEEEEEECCccccccCccccccccccceEE
Q 002252 667 DTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF-G---EKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFK 742 (947)
Q Consensus 667 ~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~-~---eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~k 742 (947)
++.+.++++++|++|.+|+||...+++.+||.+++..... . +...+.+|+|.|+|+|.+|||||||+||+|||.|+
T Consensus 137 ~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Ik 216 (241)
T COG2872 137 EDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIK 216 (241)
T ss_pred hhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECCeeccCCCCcccCCccceEEEE
Confidence 9999999999999999999999999999999987543222 1 12245899999999999999999999999999999
Q ss_pred EEeeeccccceEEEEEEecHHHH
Q 002252 743 IISEQGIASGIRRIEAVAGEAFI 765 (947)
Q Consensus 743 Il~~~~~~~Gv~RI~~v~G~~A~ 765 (947)
|++.++++++.+||+|.+|.+|.
T Consensus 217 i~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 217 ILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEecCceEEEEEEeccccc
Confidence 99999999999999999999875
No 12
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=6.5e-46 Score=387.06 Aligned_cols=365 Identities=21% Similarity=0.296 Sum_probs=289.3
Q ss_pred eEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEecCCEEEEEEEeeccccCCCCEEEEEEccccchhH
Q 002252 542 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRA 621 (947)
Q Consensus 542 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~ 621 (947)
.+.+.|.+|++||||||||+|.|++. .+.|..|.+. |-..-|++. .++.+|..|.+.|||+||+++
T Consensus 43 g~~i~lqdtiLfpegggqp~d~gf~~----------~v~V~~VsR~-G~~A~H~~~---~~iePGt~V~V~VD~qkR~D~ 108 (415)
T KOG2105|consen 43 GYEIELQDTILFPEGGGQPSDSGFLK----------IVEVSHVSRF-GLHAKHHVN---DYIEPGTTVEVAVDEQKRMDY 108 (415)
T ss_pred cceeeeeeeEeccCCCCCCCcccccc----------ceeEEEeecc-ccchhhccC---CCCCCCCeEEEEecHHHHhHH
Confidence 47899999999999999999999997 4679999888 566778775 469999999999999999999
Q ss_pred HhhccHHHHHHHHHHhHhCCcceeccccccCCcEE--EeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHH--H
Q 002252 622 KVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLR--FDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDD--A 697 (947)
Q Consensus 622 m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r--~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eE--A 697 (947)
||+||++|||+|++.+.|...+.. - .-.+++ +..+. .++|.+++..||+.+|+.|+..+||.+.+.+.+| .
T Consensus 109 MQQHsGQHLitAvad~~fKlkTtS--W--elG~~~sa~e~~~-~~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~eV 183 (415)
T KOG2105|consen 109 MQQHSGQHLITAVADHLFKLKTTS--W--ELGRFRSAIELDT-PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEV 183 (415)
T ss_pred HHHhcchhHHHHHHHhhhccceee--e--eccceeeccccCC-CCccHHHHHHHHHHHHHHHHhccchheeecccCCcch
Confidence 999999999999999998765431 1 112222 23333 4699999999999999999999999998876643 3
Q ss_pred HHhccccccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeeccccceEEEEEEecHHHHHHHHHHHHHHHH
Q 002252 698 KRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKH 777 (947)
Q Consensus 698 ~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~~v~G~~A~~~~~~~~~~l~~ 777 (947)
.+...+.++ +...+.+|+|.|+|+|.++||||||+||++|+.|+|++.++-.+|..-..|+.|.|++.|+...+.+++.
T Consensus 184 eqVS~~~~~-D~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~~mersh~t~~a 262 (415)
T KOG2105|consen 184 EQVSGRGLP-DDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKA 262 (415)
T ss_pred hhccCCCCc-ccccCceEEEeecCccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHHHHHHhcchHHH
Confidence 332222222 2335789999999999999999999999999999999988877775567788899999999999999999
Q ss_pred HHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEEEEecCCCHHHHHHHHHHH
Q 002252 778 LCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYL 857 (947)
Q Consensus 778 l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~~l~~~~~~~~~~~~~~vv~~~~~~~d~~~L~~la~~l 857 (947)
+..+|+|..+++.++|.++++..|.|+|....+.+.||...+..|.+... - +|+ ++......+.++++-+++.+
T Consensus 263 ~taLLkCgaed~vEavkk~qnstk~LqKnn~~~lr~LA~~iahsL~Ns~d-~---gG~--vi~~~~e~~sE~~N~ianei 336 (415)
T KOG2105|consen 263 LTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPD-W---GGV--VILHRKEGDSEFMNIIANEI 336 (415)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcC-c---Cce--EEeehhhccHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999876543 3 443 23333445888887777654
Q ss_pred HHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHHH
Q 002252 858 VDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARAD 937 (947)
Q Consensus 858 ~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQG~g~~~~~l~~al~~~~~~ 937 (947)
-. ..+++++......+...|+++.++.- ...+...+++.+.|||||+...+||.....+.-.++.+.+.++
T Consensus 337 ~s---~EtlL~~~~~dek~GgLflLa~~~as------vetLg~rvae~LeG~Ga~K~Gr~QGKaTkmSrrmea~AlLqDY 407 (415)
T KOG2105|consen 337 GS---EETLLFLTVGDEKGGGLFLLAGPPAS------VETLGPRVAEVLEGKGAGKKGRFQGKATKMSRRMEAQALLQDY 407 (415)
T ss_pred CC---eeEEEEEEeeccCCceEEEecCCchh------hhhhhHHHHHHhhcCCCCcCcccccchhhhhHHHHHHHHHHHH
Confidence 22 22233333222333445666656543 3456678999999999999999999998877777888888887
Q ss_pred HHHH
Q 002252 938 LVSV 941 (947)
Q Consensus 938 l~~~ 941 (947)
+..+
T Consensus 408 iS~q 411 (415)
T KOG2105|consen 408 ISTQ 411 (415)
T ss_pred hhcc
Confidence 7644
No 13
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=3.2e-46 Score=395.67 Aligned_cols=208 Identities=26% Similarity=0.424 Sum_probs=176.4
Q ss_pred eEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEecCCEEEEEEEeec------cccCCCCEEEEEEcc
Q 002252 542 DVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIRE------GVLEVGREVEAIVDP 615 (947)
Q Consensus 542 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~~~g~ivH~~~~~~------g~l~~G~~V~~~VD~ 615 (947)
.+.|+||+|+|||||||||+|+|+|...+. ...++|.+|++. +|.++|++.... ++|++|++|.++|||
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~----~~~~~V~~v~~~-~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~ 76 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGG----DTKFSVQDVRRK-DGVVYHYGVFEGSNPESASPFEAGDEVTVTVDE 76 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCC----CcEEEEEEEEEE-CCEEEEEEEecCcccccCCCCCCCCEEEEEECH
Confidence 368999999999999999999999986432 126899999998 799999986432 468899999999999
Q ss_pred ccchhHHhhccHHHHHHHHHHhH-hCCcceeccccccCCcEEEeecCCCCCCHHHH----HHHHHHHHHHHHcCCCeEEE
Q 002252 616 KLRQRAKVHHTATHLLQAALKKV-IGQETSQAGSLVAFDRLRFDFNFHRPLLDTEL----EEIERLINGWIGDANLLQTK 690 (947)
Q Consensus 616 ~rR~~~m~~HTA~HLLsaAL~~~-lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel----~~IE~~vN~~I~~nlpV~~~ 690 (947)
+||+.+|++|||+|||++||+++ +|.++.+.|+++ +++.++||. ..++.+++ .+||++||++|++++||++.
T Consensus 77 ~rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~ 153 (223)
T PLN02961 77 SRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAA 153 (223)
T ss_pred HHHhhhhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEE
Confidence 99999999999999999999997 776666777775 567788875 45776554 79999999999999999999
Q ss_pred EcCHHHHHHhccccc--cCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeeccccceEEEEEE
Q 002252 691 VMALDDAKRAGAIAM--FGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAV 759 (947)
Q Consensus 691 ~~~~eEA~~~~~~~l--~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~~v 759 (947)
+++++||+++....+ +.++ ++.||||+|+|+|.+|||||||.||+|||.|+|++.+. ++|.+||+|-
T Consensus 154 ~~~~~ea~~~~~~~~~~~~~~-~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~~~-~kg~~Rv~~~ 222 (223)
T PLN02961 154 VLPYDEAAELCGGSLPDYIAK-DSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIRV-KKGVTRVSYT 222 (223)
T ss_pred EeCHHHHHHhcCCcCCCcCCC-CCceEEEEECCCccCccCCcccCchhccccEEEEEEEe-cCCEEEEEEe
Confidence 999999998733322 2222 57899999999999999999999999999999999864 5888899984
No 14
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.76 E-value=4.5e-18 Score=204.30 Aligned_cols=141 Identities=23% Similarity=0.359 Sum_probs=117.9
Q ss_pred HHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHh
Q 002252 621 AKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRA 700 (947)
Q Consensus 621 ~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~ 700 (947)
.+.+|||+|||++|++++||... ..+++..++++++||+..+++|++++.+||+.||++|.+|+||+...++++||.++
T Consensus 7 ~~~~hS~~hlL~~A~~~~~~~~~-~~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~ 85 (575)
T PRK12305 7 EVIRHSAAHVLAQAVQELFPDAK-LGIGPPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREE 85 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCce-EEeCCCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHh
Confidence 46899999999999999998533 34555568899999998778999999999999999999999999999999999986
Q ss_pred ccc-----cccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeec-------cccceEEEEEEecHH
Q 002252 701 GAI-----AMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQG-------IASGIRRIEAVAGEA 763 (947)
Q Consensus 701 ~~~-----~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~-------~~~Gv~RI~~v~G~~ 763 (947)
+.. .++.....+.||||+|+++ .++|+||||+|||+||.|+|++.++ .+++++||+.++=..
T Consensus 86 f~~~~~k~~l~~~~~~~~vri~~ig~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~ 159 (575)
T PRK12305 86 FANEPYKLELIDDIPEEGITIYDNGDF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWET 159 (575)
T ss_pred CCcChhHHHhhhhcCCCeEEEEEECCE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCC
Confidence 431 1222223457999999984 4789999999999999999999844 478999999987654
No 15
>PLN02837 threonine-tRNA ligase
Probab=99.74 E-value=1.7e-17 Score=200.06 Aligned_cols=155 Identities=21% Similarity=0.355 Sum_probs=127.9
Q ss_pred CEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 002252 607 REVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANL 686 (947)
Q Consensus 607 ~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlp 686 (947)
.+|++.+|...|...+.+|||+|||++|++++||......|+.+ ++++++||+. .++|++++.+||+.||++|.+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999986544556654 5789999997 689999999999999999999999
Q ss_pred eEEEEcCHHHHHHhccc-------cccCCCCCCcEEEEEECCccccccCcccccccccc--ceEEEEeeecc-------c
Q 002252 687 LQTKVMALDDAKRAGAI-------AMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEI--RAFKIISEQGI-------A 750 (947)
Q Consensus 687 V~~~~~~~eEA~~~~~~-------~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeI--g~~kIl~~~~~-------~ 750 (947)
|+..+++++||.+.... .++.....+.||||+|||.+.++|+||||+|||+| +.|||++.++. .
T Consensus 108 I~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~~~~ 187 (614)
T PLN02837 108 LVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELESVAGAYWRGDEKN 187 (614)
T ss_pred EEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECCeEEEecCCCCcccccccccceEEEEEeehhhhcccccC
Confidence 99999999999885321 11111114679999999756788999999999999 89999988762 2
Q ss_pred cceEEEEEEecHH
Q 002252 751 SGIRRIEAVAGEA 763 (947)
Q Consensus 751 ~Gv~RI~~v~G~~ 763 (947)
.-..||+.++=..
T Consensus 188 ~~l~ri~g~~~~~ 200 (614)
T PLN02837 188 QMLQRIYGTAWES 200 (614)
T ss_pred cceEEEEEEecCC
Confidence 3466888777554
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=1e-16 Score=194.87 Aligned_cols=161 Identities=24% Similarity=0.336 Sum_probs=132.0
Q ss_pred ccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHHHH
Q 002252 602 VLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWI 681 (947)
Q Consensus 602 ~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I 681 (947)
++..+..|+..-....+-..+.+||++|||++|++++||.. ...+++..++++++||+...++|++++.+||+.||++|
T Consensus 50 ~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~-~~~~~~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI 128 (638)
T PRK00413 50 PIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDA-KLTIGPVIENGFYYDFDRERPFTPEDLEAIEKEMKEII 128 (638)
T ss_pred cccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCc-eEEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45667788887777778888999999999999999999753 23445555789999999877899999999999999999
Q ss_pred HcCCCeEEEEcCHHHHHHhccc-------cccCCCC-CCcEEEEEECCccccccCccccccccccceEEEEeeec-----
Q 002252 682 GDANLLQTKVMALDDAKRAGAI-------AMFGEKY-GEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQG----- 748 (947)
Q Consensus 682 ~~nlpV~~~~~~~eEA~~~~~~-------~l~~eky-~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~----- 748 (947)
.+|+||+...++.+||.+++.. .++.... ++.||||+|+++ .++|+||||+|||+|+.|+|++.++
T Consensus 129 ~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~-~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~ 207 (638)
T PRK00413 129 KENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEF-VDLCRGPHVPSTGKIKAFKLLKVAGAYWRG 207 (638)
T ss_pred hcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCE-EEECCCCCCCcccCCceeEEEEEcceEEcC
Confidence 9999999999999999986321 1111111 237999999984 6899999999999999999998844
Q ss_pred --cccceEEEEEEecHHH
Q 002252 749 --IASGIRRIEAVAGEAF 764 (947)
Q Consensus 749 --~~~Gv~RI~~v~G~~A 764 (947)
.+++.+||+.++-...
T Consensus 208 ~~~~~~l~Ri~g~~~~~~ 225 (638)
T PRK00413 208 DSKNKMLQRIYGTAFADK 225 (638)
T ss_pred CCcchheEEEEeeecCCH
Confidence 3678999999877664
No 17
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.66 E-value=1.4e-15 Score=184.75 Aligned_cols=143 Identities=20% Similarity=0.331 Sum_probs=117.3
Q ss_pred hhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHH
Q 002252 619 QRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAK 698 (947)
Q Consensus 619 ~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~ 698 (947)
-..+.+||++|||++|++++||......|.. .++++++||+...++|++++.+||+.||++|.+|+||+...++++||.
T Consensus 71 g~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~-~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~ 149 (639)
T PRK12444 71 GVEIARHSAAHILAQAVKRLYGDVNLGVGPV-IENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAA 149 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEeCCc-CCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHH
Confidence 3357899999999999999999743334444 478999999987789999999999999999999999999999999999
Q ss_pred Hhccc-------cccCCCC-CCcEEEEEECCccccccCccccccccccceEEEEeeecc-------ccceEEEEEEecHH
Q 002252 699 RAGAI-------AMFGEKY-GEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGI-------ASGIRRIEAVAGEA 763 (947)
Q Consensus 699 ~~~~~-------~l~~eky-~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~-------~~Gv~RI~~v~G~~ 763 (947)
+++.. .++.... .+.||||+|++ ..+.|+||||+|||+|+.|+|++.++- .++.+||+.+|=..
T Consensus 150 ~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~-~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~ 228 (639)
T PRK12444 150 KLFQEMNDRLKLELLEAIPSGESITLYKQGE-FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSS 228 (639)
T ss_pred HHHhhcCCchHHHHHhcCCCCCeEEEEEECC-EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEecCC
Confidence 86321 1121111 25699999998 577899999999999999999988764 67899999977544
No 18
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.59 E-value=7.6e-15 Score=176.17 Aligned_cols=139 Identities=26% Similarity=0.368 Sum_probs=116.2
Q ss_pred hccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhcc-
Q 002252 624 HHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGA- 702 (947)
Q Consensus 624 ~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~- 702 (947)
+||++|||++|++++++....+.|+.+ ++++++||+...++|++++.+||+.||++|.+++||....++++||.+...
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 699999999999999987656677777 567999999878899999999999999999999999999999999998654
Q ss_pred -----ccccCCC-CCCcEEEEEECCccccccCccccccccccceEEEEeeecc-------ccceEEEEEEecHH
Q 002252 703 -----IAMFGEK-YGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGI-------ASGIRRIEAVAGEA 763 (947)
Q Consensus 703 -----~~l~~ek-y~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~-------~~Gv~RI~~v~G~~ 763 (947)
..++... +.+.|||+.+++++.+.|.||||+|||.|+.|+|++...- ..-+.||+.++=..
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~ 153 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWAD 153 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCC
Confidence 1122232 4578999999987899999999999999999999976542 24567888877443
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=99.48 E-value=2.6e-13 Score=166.00 Aligned_cols=145 Identities=17% Similarity=0.268 Sum_probs=117.1
Q ss_pred hhHHhhccHHHHHHHHHHhHhCCcceeccccccC-CcEEEeecCC-CCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHH
Q 002252 619 QRAKVHHTATHLLQAALKKVIGQETSQAGSLVAF-DRLRFDFNFH-RPLLDTELEEIERLINGWIGDANLLQTKVMALDD 696 (947)
Q Consensus 619 ~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~-d~~r~Df~~~-~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eE 696 (947)
-.-+.+||++|||.+|++++||.++. .|..+++ +++++||... .++|++++..||+.||++|.+++||+...++++|
T Consensus 118 g~~~y~hS~ahlL~~A~~~~~~~~l~-ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~ee 196 (686)
T PLN02908 118 GRDTFWHSSAHILGEALELEYGCKLC-IGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREE 196 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeEE-ecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHH
Confidence 45678999999999999999987654 4666654 7889998854 5799999999999999999999999999999999
Q ss_pred HHHhccc-----cccCCCC-CCcEEEEEECCccccccCccccccccccceEEEEeeecc-------ccceEEEEEEecHH
Q 002252 697 AKRAGAI-----AMFGEKY-GEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGI-------ASGIRRIEAVAGEA 763 (947)
Q Consensus 697 A~~~~~~-----~l~~eky-~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~-------~~Gv~RI~~v~G~~ 763 (947)
|.+++.. .++.... .+.|+|++||+ ..++|.||||+|||+|+.|+|++.++. .....||+.++=..
T Consensus 197 A~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~-~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~ 275 (686)
T PLN02908 197 ALEMFSENKFKVEIINDLPEDATITVYRCGP-LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFPD 275 (686)
T ss_pred HHHHHhhCCcHHHHHhhCCCCCeeEEEEECC-EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccCC
Confidence 9986432 1221111 34699999998 567899999999999999999988742 34567999998766
Q ss_pred HH
Q 002252 764 FI 765 (947)
Q Consensus 764 A~ 765 (947)
..
T Consensus 276 ~~ 277 (686)
T PLN02908 276 KK 277 (686)
T ss_pred hH
Confidence 43
No 20
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.43 E-value=1.3e-13 Score=109.66 Aligned_cols=44 Identities=50% Similarity=0.841 Sum_probs=38.8
Q ss_pred EEEEEECCccccccCccccccccccceEEEEeeeccccceEEEE
Q 002252 714 VRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIE 757 (947)
Q Consensus 714 VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~ 757 (947)
||||+|+++|.++||||||.||++||.|+|++.+++++|++|||
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 79999999999999999999999999999999999999999996
No 21
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.4e-10 Score=137.69 Aligned_cols=138 Identities=22% Similarity=0.361 Sum_probs=111.9
Q ss_pred chhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHH
Q 002252 618 RQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDA 697 (947)
Q Consensus 618 R~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA 697 (947)
...-..+||++|||..|++++++. + ..| .+.++++++||+...++|++++..||+.|++++.++++|....+++++|
T Consensus 24 ~~~~~~rhs~ah~l~~av~~l~p~-~-~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a 100 (589)
T COG0441 24 EGLEIIRHSCAHVLAQAVKRLYPD-V-TIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEA 100 (589)
T ss_pred cchhhhhhHHHHHHHHHHHHhCCC-c-ccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHH
Confidence 344568899999999999999987 3 356 5667999999999888999999999999999999999999999999999
Q ss_pred HHhccc---cccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeecc-------ccceEEEEEEec
Q 002252 698 KRAGAI---AMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGI-------ASGIRRIEAVAG 761 (947)
Q Consensus 698 ~~~~~~---~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~-------~~Gv~RI~~v~G 761 (947)
++.+.. .+..+ .+..+.+++-+. ..++|-|+||+||+.| .||+++.++- ..-..||+-.+=
T Consensus 101 ~~~f~~yK~~~i~~-~~~~~s~y~~~~-~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~riygta~ 171 (589)
T COG0441 101 RAPFGPYKAELIDC-KGHPLSEYSQGE-FVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRIYGTAF 171 (589)
T ss_pred HHHhhhhHHHHHhc-CCCCceeEecCc-cccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEEecccc
Confidence 886431 11112 247788888876 8999999999999999 9999987643 333457765554
No 22
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.18 E-value=1.7e-11 Score=97.40 Aligned_cols=44 Identities=57% Similarity=0.853 Sum_probs=41.3
Q ss_pred EEEEEECCccccccCccccccccccceEEEEeeeccccceEEEE
Q 002252 714 VRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIE 757 (947)
Q Consensus 714 VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~ 757 (947)
||+|.|+++|.++||||||.||++||.|+|++.++...+.+||+
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 69999999999999999999999999999999999888888884
No 23
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=98.18 E-value=3.2e-06 Score=73.14 Aligned_cols=65 Identities=31% Similarity=0.498 Sum_probs=54.3
Q ss_pred EEEEEeecCCCcEEEEEEeccchhcccccHH-HHHHHHHHHcCCCCCCcccceeeccCCcccHHHHHHHHHH
Q 002252 866 AVVLGSCPDEGKVSLIAAFSQGIVDLGIQAG-KFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARA 936 (947)
Q Consensus 866 vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~-~l~k~l~~~~gGkGGGk~~~AQG~g~~~~~l~~al~~~~~ 936 (947)
++++++ ..++++.+.+.++++ ++.. +|++++++.++|+|||++.+|||+++++.+++++++.+.+
T Consensus 3 ~~i~~~-~~~~~~~~s~rs~~~-----~~~~~~~~~~~~~~~~G~GGGh~~aAg~~~~~~~~l~~~~~~~~e 68 (68)
T PF02272_consen 3 PVIVFS-EEDGKIKVSARSSKG-----VDDKGEILKELAEKLGGKGGGHPDAAGGSIPKPEKLEEFLKALEE 68 (68)
T ss_dssp EEEEEE-EESSTEEEEEEESSS-----STHH-HHHHHCHHHGTCEEEEESSEEEEEESCGGHHHHHHHHHHH
T ss_pred EEEEEE-EcCCEEEEEEEECCc-----hhhHHHHHHHHHHHcCCCCCCCHHHhcccCCCchhHHHHHHHhcC
Confidence 455666 678888888876654 4555 9999999999999999999999999998889999888764
No 24
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.0015 Score=74.75 Aligned_cols=69 Identities=25% Similarity=0.498 Sum_probs=54.4
Q ss_pred HhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhc
Q 002252 622 KVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAG 701 (947)
Q Consensus 622 m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~ 701 (947)
..|||++|+|..|+++.+|.+.+ .|..+ ++++++|+ + ..++.+++..||.
T Consensus 68 vfwhssahvlg~a~e~~~g~~lc-~Gpp~-~~gf~yd~-~-~~i~~~d~~~~e~-------------------------- 117 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAHLC-IGPPI-EEGFYYDM-L-DEISSNDFPSIEA-------------------------- 117 (560)
T ss_pred eeeehhhhHhhHHHHHhcCeeEe-eCCCC-cCceehhh-h-ccccccccccccc--------------------------
Confidence 58999999999999999999887 47654 57888887 4 3344444444333
Q ss_pred cccccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeec
Q 002252 702 AIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQG 748 (947)
Q Consensus 702 ~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~ 748 (947)
+||++||.|+.|||++.++
T Consensus 118 ----------------------------phi~~tg~ika~k~~~nss 136 (560)
T KOG1637|consen 118 ----------------------------PHIRHTGKIKAFKILKNSS 136 (560)
T ss_pred ----------------------------ccccccceeeeeeeeccch
Confidence 9999999999999998765
No 25
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=96.04 E-value=0.02 Score=59.32 Aligned_cols=175 Identities=23% Similarity=0.259 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCC-C--Cc------cceec---ccccccccccc-ccC-------CCCCCCccccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPE-D--PT------VLLTI---AGMLQFKPIFL-GKV-------PRQVPRAATSQ 110 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~-d--~t------llftn---AGm~qfk~~f~-g~~-------~p~~~r~~~~Q 110 (947)
+.+.+.+-++|.++|+..+-++++++. + .. +.+.| ..+..+.|-.+ +.. ....-|+.-.+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 467888999999999999999999872 1 10 11111 11112222111 100 00113677888
Q ss_pred cccccCCccccCCCCCcccccccccCcccCccc-----HHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhc
Q 002252 111 RCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYF-----KKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEV 185 (947)
Q Consensus 111 kCiR~nDldnVG~t~rHhTfFEMlGn~SfgdYf-----K~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~ 185 (947)
+|.|..+- .-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.+-.++
T Consensus 83 ~vfr~e~~-~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~~~~~~----------------- 141 (211)
T cd00768 83 PAFRNEGG-RRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKLDIVFV----------------- 141 (211)
T ss_pred ceeecCCC-ccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCcceEEE-----------------
Confidence 99988542 111 3677899999999998644 3678888888886 66763221111
Q ss_pred CCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccc---------cCCCcc
Q 002252 186 GVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK---------KDDGSL 256 (947)
Q Consensus 186 g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~---------~~~g~~ 256 (947)
. .....||. +.+|+|.+|+++... .|+.||+++-...-+. +++++.
T Consensus 142 --------~-~~~~~~~~----~~~g~~~~i~~~~~~------------~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~ 196 (211)
T cd00768 142 --------E-KTPGEFSP----GGAGPGFEIEVDHPE------------GRGLEIGSGGYRQDEQARAADLYFLDEALEY 196 (211)
T ss_pred --------e-cCchhhcc----ccCCceEEEEEEccC------------CCeEEEeeceeecCchhHhhhhheecccccc
Confidence 0 11223443 478999999997432 2556777665443322 233433
Q ss_pred ccCccCcccccchHHHH
Q 002252 257 EPLKQKNIDTGLGLERI 273 (947)
Q Consensus 257 ~~L~~~~iDtGmGlERi 273 (947)
..| .+|=.|+|+||+
T Consensus 197 -~~p-~~~~~~~~~~R~ 211 (211)
T cd00768 197 -RYP-PTIGFGLGLERL 211 (211)
T ss_pred -cCc-eeecCccCccCC
Confidence 345 566677999995
No 26
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=95.84 E-value=0.13 Score=55.32 Aligned_cols=175 Identities=26% Similarity=0.311 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceecccccccccc-ccccCCCCCCCccccccccccCCc---ccc
Q 002252 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENV 121 (947)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnV 121 (947)
.+|+-++|-.+--+|..++|..++.++.+= + |--.|-|. |+..-.|..-+++-+|+|.|-.|= +|=
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E--------v--GAGT~~P~Tflr~Lgpepw~vaYvqPsRRP~DGRYGeNP 71 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME--------V--GAGTFHPATFLRALGPEPWNAAYVQPSRRPTDGRYGENP 71 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc--------c--ccccCCHHHHHHhcCCCccccccccCCCCCCCCCcCCCc
Confidence 468999999999999999999999877653 2 33367773 344334444579999999998662 222
Q ss_pred CCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCc
Q 002252 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (947)
Q Consensus 122 G~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnf 201 (947)
-+ -.||.=|..+=-=|-.+ ..+.=.+=| +.+||||.. |=+||- +||
T Consensus 72 NR-Lq~y~QfQVilKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------hDIRFV-EDn- 117 (283)
T PRK09348 72 NR-LQHYYQFQVILKPSPDN-----IQELYLGSL-EALGIDPLE-------------------------HDIRFV-EDN- 117 (283)
T ss_pred hh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cceeEe-ecC-
Confidence 22 23555455544444433 011111111 246777655 224542 444
Q ss_pred ccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCC
Q 002252 202 WNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (947)
Q Consensus 202 W~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~ 281 (947)
|+-=.-|--|-==|+--| .+||=-.-+ |.+ ..| .++....+.-=+||||||+.|||+.
T Consensus 118 WEsPTLGAwGlGWEVWld-----------------GMEITQFTY--FQQ-vGG--i~~~pv~~EITYGLERiamylQ~vd 175 (283)
T PRK09348 118 WESPTLGAWGLGWEVWLD-----------------GMEVTQFTY--FQQ-VGG--IECKPVTGEITYGLERLAMYLQGVD 175 (283)
T ss_pred CCCCcccccccceEEEEC-----------------Ceeeeeeee--eee-eCC--eeccccceeeehhHHHHHHHHhCCC
Confidence 652222667766777765 278764333 333 334 3566667788899999999999999
Q ss_pred CCccc
Q 002252 282 NNYET 286 (947)
Q Consensus 282 s~ydt 286 (947)
|+||.
T Consensus 176 ~v~dl 180 (283)
T PRK09348 176 NVYDL 180 (283)
T ss_pred ceeee
Confidence 99997
No 27
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=95.03 E-value=0.029 Score=67.72 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=58.3
Q ss_pred ccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhccccccCCCCCCcEEEEEECCccccccCc
Q 002252 650 VAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGG 729 (947)
Q Consensus 650 v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgG 729 (947)
+++..|++|...+..+|.++..+ +...| |.....++ .+. |+.+|. -+.+|.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~-----------------~~~--~~~~~~-~~~~~~~ 82 (545)
T PRK14799 31 LGERDFYIDVKSDTSITLDEVKK-------AINEN-VLANVSIE-----------------NNQ--IVYKGN-KVSIIED 82 (545)
T ss_pred ccceeEEEecCCCccccHHHHHH-------HHhcC-cceeeEee-----------------cCc--EEEccC-ceeecCC
Confidence 56778999988776677654333 22232 22222211 122 445664 7899999
Q ss_pred -cccccccccceEEEEeeecc----ccceEEEEEEecHH
Q 002252 730 -THVNNTAEIRAFKIISEQGI----ASGIRRIEAVAGEA 763 (947)
Q Consensus 730 -THV~nTgeIg~~kIl~~~~~----~~Gv~RI~~v~G~~ 763 (947)
|||+||+.|+.|||++.++. ..-..||+.++=..
T Consensus 83 ~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~ 121 (545)
T PRK14799 83 KVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFET 121 (545)
T ss_pred CCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCC
Confidence 99999999999999999874 24567999887654
No 28
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=94.59 E-value=0.43 Score=51.84 Aligned_cols=176 Identities=22% Similarity=0.313 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceecccccccccc-ccccCCCCCCCccccccccccCCc---cccCC
Q 002252 48 SSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENVGR 123 (947)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnVG~ 123 (947)
|+-++|-.+--+|..++|..++.++.+= + |--.|-|. |+..-.|..-+++-+|+|.|-.|= +|=-+
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E--------v--GAGT~hPaTflralgpepw~vAYVqPsRRP~DGRYGeNPNR 70 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME--------K--GAGTMHPMTFLRSLGPEPWAVAYVEPSRRPTDGRYGENPNR 70 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc--------c--ccccCCHHHHHHhcCCCcceeccccCCCCCCCCCCCCCchh
Confidence 5778899999999999999999877653 2 33367773 444334444579999999999662 34333
Q ss_pred CCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCccc
Q 002252 124 TSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWN 203 (947)
Q Consensus 124 t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~ 203 (947)
- .||.=|..+=-=|-.+ ..+.=.+=| +.+||+|.. |=+||- +|| |+
T Consensus 71 L-q~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------hDIRFV-EDn-WE 116 (293)
T TIGR00388 71 L-QHYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPTE-------------------------HDIRFV-EDN-WE 116 (293)
T ss_pred h-hheeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cCeeEe-ecC-CC
Confidence 3 3454455544444443 011111111 246777654 224542 454 65
Q ss_pred CCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCC
Q 002252 204 SGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283 (947)
Q Consensus 204 ~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ 283 (947)
-=.-|--|===|+--| .+||=-.- =|.+ ..| + ++..-.+.-=+||||||+.|||+.|+
T Consensus 117 sPTLGAwGlGWEVWld-----------------GMEITQFT--YFQQ-vGG-i-~~~pv~~EITYGLERiaMylQ~vd~v 174 (293)
T TIGR00388 117 NPTLGAWGLGWEVWLD-----------------GMEVTQFT--YFQQ-VGG-L-ECKPVSVEITYGLERLAMYIQGVENV 174 (293)
T ss_pred CCcccccccccEEEEC-----------------Ceeeeeee--eeee-eCC-e-eccccceeeehhHHHHHHHHhCCCee
Confidence 2222667766777764 27775433 3333 334 2 45555677789999999999999999
Q ss_pred ccccccH
Q 002252 284 YETDLIF 290 (947)
Q Consensus 284 ydtdlf~ 290 (947)
||. .+.
T Consensus 175 ~dl-~w~ 180 (293)
T TIGR00388 175 YDL-EWS 180 (293)
T ss_pred eee-eec
Confidence 997 443
No 29
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=94.03 E-value=0.011 Score=71.38 Aligned_cols=92 Identities=22% Similarity=0.146 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeec---ccccccCC
Q 002252 177 AFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVF---MQYNKKDD 253 (947)
Q Consensus 177 ~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVF---mq~~~~~~ 253 (947)
|++.-.+.+|||++||.- ....|. |.||+|-|.++ ...|.-+++| |+|....+
T Consensus 106 awe~lt~~l~i~~~~l~v---t~~~~d----~ea~~~w~~~~-----------------g~~~~~i~~~~~~~nfw~~g~ 161 (552)
T PF01411_consen 106 AWEFLTEVLGIPPDRLYV---TVFEWD----GEAGEIWEKIV-----------------GGPEERILVFGKKDNFWEMGD 161 (552)
T ss_dssp HHHHHHCTTT--GGGEEE---EEECCE----CCCCCCCCECC-----------------TTECCCEEEE-CCEEEEESST
T ss_pred HHHHHHhhcCCChHhEEE---EEeCCc----hhHHHHHHHhc-----------------CCCHHHeEecCCCCceEECCC
Confidence 345556788999999964 334443 58999999776 2378889999 99997555
Q ss_pred CccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHH
Q 002252 254 GSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIK 294 (947)
Q Consensus 254 g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ydtdlf~p~i~ 294 (947)
+ ....|...||+|+|+||..|..++.++.|+. .|..|.+
T Consensus 162 ~-gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn 200 (552)
T PF01411_consen 162 T-GPCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIWN 200 (552)
T ss_dssp S-EEEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCCC
T ss_pred C-CCCCCCEEEEECCCcccCccccccccccccc-cHHHHHH
Confidence 3 6889999999999999999999999998775 5555444
No 30
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=94.02 E-value=0.68 Score=50.01 Aligned_cols=170 Identities=26% Similarity=0.377 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceecccccccccc-ccccCCCCCCCccccccccccCCc---cccCCCC
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENVGRTS 125 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnVG~t~ 125 (947)
-++|-.+--+|..++|..++.++.+= -|--.|-|. |+..-.|..-+++-+|+|.|-.|= +|=-+ -
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E----------vGAGT~hPaTflr~Lgpepw~vAYVqPsrRP~DGRYGeNPNR-L 70 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME----------VGAGTFHPATFLRALGPEPWNVAYVEPSRRPTDGRYGENPNR-L 70 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc----------cccccCCHHHHHHhcCCCcceeccccCCCCCCCCCcCCCchh-h
Confidence 45777888899999999999877653 233467773 444444444579999999998662 22222 2
Q ss_pred CcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCC
Q 002252 126 RHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (947)
Q Consensus 126 rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G 205 (947)
.||.=|..+=-=|-.+ ..+.=.+-| +.+||+|.. |=+||- +|| |+ -
T Consensus 71 q~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------hDIRFV-EDn-WE-s 116 (279)
T cd00733 71 QHYYQFQVIIKPSPDN-----IQELYLESL-EALGINPKE-------------------------HDIRFV-EDN-WE-S 116 (279)
T ss_pred hhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cCeeEe-ecC-CC-C
Confidence 3555455544444433 111111111 246666654 224542 444 65 3
Q ss_pred CC-CCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCc
Q 002252 206 AT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNY 284 (947)
Q Consensus 206 ~~-GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~y 284 (947)
+| |--|-==|+--| .+||=-.-+ |.+ ..| .++....+.-=+||||||+.|||+.++|
T Consensus 117 PTLGAwGLGWEVWld-----------------GMEITQFTY--FQQ-vGG--i~~~pv~~EiTYGLERiamylQ~vd~v~ 174 (279)
T cd00733 117 PTLGAWGLGWEVWLD-----------------GMEVTQFTY--FQQ-VGG--IPCKPISVEITYGLERIAMYLQGVDNVY 174 (279)
T ss_pred CcccccccccEEEEC-----------------Ceeeeeeee--eee-eCC--eeccccceeeehhHHHHHHHHhCCCcee
Confidence 33 677777787765 278764333 333 334 2456667778899999999999999999
Q ss_pred cc
Q 002252 285 ET 286 (947)
Q Consensus 285 dt 286 (947)
|.
T Consensus 175 dl 176 (279)
T cd00733 175 DI 176 (279)
T ss_pred cc
Confidence 97
No 31
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=93.81 E-value=0.35 Score=61.74 Aligned_cols=175 Identities=23% Similarity=0.327 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceecccccccccc-ccccCCCCCCCccccccccccCCc---ccc
Q 002252 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENV 121 (947)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnV 121 (947)
.+||-+++-.+--+|+.++|..++.++.+= + |--.|-|. |+..-.|..-+++-+|+|.|-.|= +|=
T Consensus 3 ~~~~~q~~i~~l~~~w~~~gc~~~qp~~~e--------~--gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~np 72 (1000)
T PRK14908 3 QPLTMQDMLLALLRYWSEQGCIIHQGYDLE--------V--GAGTFNPATFLRVLGPEPWRVAYVEPSRRPDDGRYGQNP 72 (1000)
T ss_pred CcccHHHHHHHHHHHHHHCCCEEECCcccc--------c--ccCcCCHHHHHhhcCCCCCcccccCCCCCCCCCCcCCCc
Confidence 358999999999999999999999877653 2 33367773 344434444479999999999652 333
Q ss_pred CCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCc
Q 002252 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (947)
Q Consensus 122 G~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnf 201 (947)
-+ -.||+=|..+=-=|-++- .+.=.+= .+.+|||+.. |=++|- +||
T Consensus 73 nr-l~~~~q~qvi~kp~p~~~-----q~~yl~s-l~~~gi~~~~-------------------------~dirfv-ed~- 118 (1000)
T PRK14908 73 NR-LQTYTQFQVILKPVPGNP-----QELYLES-LKAIGIDLRD-------------------------HDIRFV-HDD- 118 (1000)
T ss_pred hh-hhhheeeEEEECCCCccH-----HHHHHHH-HHHcCCCccc-------------------------cceeEe-ecC-
Confidence 33 346666666555555440 0111111 1246777654 224442 455
Q ss_pred ccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCC
Q 002252 202 WNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (947)
Q Consensus 202 W~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~ 281 (947)
|+-=.-|--|===|+..| .+||=-.-|. .+ ..| .++....+.-=+|||||++.|||+.
T Consensus 119 we~p~lga~glgwevw~~-----------------gmeitqftyf--qq-~gg--~~~~~~~~eitygler~~m~~q~~~ 176 (1000)
T PRK14908 119 WENPTIGAWGLGWEVWLD-----------------GMEITQFTYF--QQ-AGG--KPLDPISGEITYGIERIAMYLQKVN 176 (1000)
T ss_pred CCCCcccccccccEEEEC-----------------Ceeeeeeeee--hh-cCC--eeccccceeeeccHHHHHHHHhCCC
Confidence 652222667766777764 2787644333 22 334 3566677888899999999999999
Q ss_pred CCccc
Q 002252 282 NNYET 286 (947)
Q Consensus 282 s~ydt 286 (947)
+.||.
T Consensus 177 ~~~~~ 181 (1000)
T PRK14908 177 HFKDI 181 (1000)
T ss_pred eeeee
Confidence 99986
No 32
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=93.65 E-value=1.3 Score=53.76 Aligned_cols=96 Identities=26% Similarity=0.232 Sum_probs=61.9
Q ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCccccee
Q 002252 839 VESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQ 918 (947)
Q Consensus 839 ~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQ 918 (947)
+..-++.....+-.+|..|.++...+ ++++.. .++.. + .+|.-.. .|+++.++++++...++++|||.+. |=
T Consensus 328 v~~~~~~~~Gv~GivA~rl~~~~~kP-~ivls~--~~~~~-~--kgS~Rs~-~g~nl~~~l~~~~~~~l~~~GGH~~-Aa 399 (539)
T TIGR00644 328 VVAGENWHPGVLGIVASRLAETFNKP-VIVLAI--DEGKG-A--KGSARSI-SGIDLYDLLSELREALFLKFGGHAM-AA 399 (539)
T ss_pred EEEeCCCCCchHHHHHHHHHHHHCCC-EEEEEE--cCCce-E--EEeeccC-CCCcHHHHHHHHHHhhccccCChHH-cC
Confidence 33345566778888999999988776 555543 33321 1 1111111 3699999999988867889999853 32
Q ss_pred eccCCcccHHHHHHHHHHHHHHHh
Q 002252 919 AGGRKPENLSIALEKARADLVSVL 942 (947)
Q Consensus 919 G~g~~~~~l~~al~~~~~~l~~~L 942 (947)
|-.-..+.++++.+.+.+.+.+.+
T Consensus 400 G~~i~~~~~~~f~~~l~~~~~~~~ 423 (539)
T TIGR00644 400 GLTLKRENLEEFREKLEEKFKKIL 423 (539)
T ss_pred eeEEcHHHHHHHHHHHHHHHHhhc
Confidence 222256788888888887776544
No 33
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=91.32 E-value=1.9 Score=50.89 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC-C-CCcc-ceeccccccc-cccccccCCC---------CCCCccccccccccCC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP-E-DPTV-LLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTND 117 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp-~-d~tl-lftnAGm~qf-k~~f~g~~~p---------~~~r~~~~QkCiR~nD 117 (947)
+.|-+.+-+||.++|...|..--|++ . ++.. +|. +.-| ++.+|-+.+- ...|+=..-+|.|+-+
T Consensus 137 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~---v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~ 213 (428)
T TIGR00458 137 SGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFP---ITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEE 213 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceee---eEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCC
Confidence 45556778999999999886544543 1 1111 121 0001 3334433211 2567888899999944
Q ss_pred ccccCCCCCcccccccccCc-ccCcccHHHHHHHHHHhhh
Q 002252 118 VENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFST 156 (947)
Q Consensus 118 ldnVG~t~rHhTfFEMlGn~-SfgdYfK~eai~~awe~lt 156 (947)
.+ |.||.+=|.||--. +|.|| ++.++.+=+++.
T Consensus 214 ---~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 214 ---HN-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred ---CC-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 33 57999999998654 77787 566665555543
No 34
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=90.17 E-value=1.5 Score=49.78 Aligned_cols=94 Identities=24% Similarity=0.409 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccccc------cccccccCCC--------CCCCccccccccccC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF------KPIFLGKVPR--------QVPRAATSQRCIRTN 116 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qf------k~~f~g~~~p--------~~~r~~~~QkCiR~n 116 (947)
+.|.+.+-+||.++|...|..-.+.+.+.. ++..+| +|.+|-+.+- ...|+-...+|.|+-
T Consensus 28 s~i~~~ir~~f~~~gf~eV~TP~l~~~~~e-----~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E 102 (322)
T cd00776 28 SEVLRAFREFLRENGFTEVHTPKITSTDTE-----GGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAE 102 (322)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceecCCCC-----ccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccccC
Confidence 578888999999999999977666652111 233334 4445543221 157888889999995
Q ss_pred CccccCCCCCcccccccccCc-ccC-cccHHHHHHHHHHhh
Q 002252 117 DVENVGRTSRHHTFFEMLGNF-SFG-DYFKKEAIQWAWEFS 155 (947)
Q Consensus 117 DldnVG~t~rHhTfFEMlGn~-Sfg-dYfK~eai~~awe~l 155 (947)
+. .|.||+.=|.||.-. +|. || ++.|+.+=++|
T Consensus 103 ~~----~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll 137 (322)
T cd00776 103 KS----NTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELI 137 (322)
T ss_pred CC----CcCCCcceeeccceeeeccCCH--HHHHHHHHHHH
Confidence 42 357999999999754 444 54 34444444443
No 35
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=89.15 E-value=4.2 Score=43.94 Aligned_cols=174 Identities=24% Similarity=0.342 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceecccccccccc-ccccCCCCCCCccccccccccCCc---ccc
Q 002252 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENV 121 (947)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnV 121 (947)
++|+-+.|--+-.+|..++|..++-++-+= .|--.|-|+ ||..--|..=.++-+|+|-|-.|= +|-
T Consensus 3 ~~~~fQ~~IltLq~yW~~qGC~i~QpyD~e----------vGAGT~hPaTfLralGpePw~aAYVqPSRRP~DGRYGenP 72 (298)
T COG0752 3 KKLTFQGLILTLQNYWAEQGCTILQPYDME----------VGAGTFHPATFLRALGPEPWNAAYVQPSRRPTDGRYGENP 72 (298)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEecccccc----------cccCcCChHHHHHhcCCCccceeeeccCCCCCCCCCCCCc
Confidence 468899999999999999999998776542 233478884 444333333358899999998662 222
Q ss_pred CCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCC-CcccccCCCCC
Q 002252 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPV-EHIKRMGADDN 200 (947)
Q Consensus 122 G~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~-~~I~~~~~~dn 200 (947)
.+=.+||-| .. .++=+|+++ .|-|=-=++.+||++ +|=+||- +||
T Consensus 73 NRlq~yyQf-QV------------------------ilKPsP~Ni--------QeLYL~SL~~lGid~~~HDIRFV-EDn 118 (298)
T COG0752 73 NRLQHYYQF-QV------------------------IIKPSPDNI--------QELYLGSLEALGIDPLEHDIRFV-EDN 118 (298)
T ss_pred hhhhhheeE-EE------------------------EecCCCccH--------HHHHHHHHHHcCCChhhcceeee-ccC
Confidence 222223332 21 122223221 000000011234332 2345553 444
Q ss_pred cccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCC
Q 002252 201 FWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKV 280 (947)
Q Consensus 201 fW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~ 280 (947)
|+-=.-|--|-==|+..| .+||=-.-| |.+ ..| + ++..-.+.-=+||||||+.+||+
T Consensus 119 -WE~PTlGawGlGWEVWld-----------------GMEvTQFTY--FQQ-vGG-i-ec~pV~~EITYGlERlAmYiQ~v 175 (298)
T COG0752 119 -WENPTLGAWGLGWEVWLD-----------------GMEVTQFTY--FQQ-VGG-L-ECKPVSGEITYGLERLAMYIQGV 175 (298)
T ss_pred -CCCCcccccccceeEEEc-----------------Ceeeeeeeh--hhh-hCC-e-eccceeeeeehhHHHHHHHHhCc
Confidence 763323777877787775 277754333 333 344 2 34445566779999999999999
Q ss_pred CCCccc
Q 002252 281 PNNYET 286 (947)
Q Consensus 281 ~s~ydt 286 (947)
.++||.
T Consensus 176 dnVydl 181 (298)
T COG0752 176 DNVYDL 181 (298)
T ss_pred cceeEE
Confidence 999996
No 36
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=87.98 E-value=1.9 Score=48.59 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccccc-----------cccccccCC---------CCCCCccccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF-----------KPIFLGKVP---------RQVPRAATSQ 110 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qf-----------k~~f~g~~~---------p~~~r~~~~Q 110 (947)
+.|-+.+-+||.++|...|.+--+.+.+ -+.+|..+| ++.+|-+.+ ....|+=..-
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAP----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCC----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 4678889999999999988665555321 011222222 344443322 1357888889
Q ss_pred cccccCCccccCCCCCcccccccccCc-ccCcccHHHHHHHHHHhhhccc
Q 002252 111 RCIRTNDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFSTVEF 159 (947)
Q Consensus 111 kCiR~nDldnVG~t~rHhTfFEMlGn~-SfgdYfK~eai~~awe~lt~~l 159 (947)
||.|+-.. +.||.+=|-||=-. +|.|| ++.++..=+++..++
T Consensus 81 p~FRaE~~-----~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~ 123 (304)
T TIGR00462 81 KVFRNGER-----GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELL 123 (304)
T ss_pred CceeCCCC-----CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHH
Confidence 99999654 36999999998442 45565 556666666665444
No 37
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=87.78 E-value=0.97 Score=50.08 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC---CCCccceeccccccc---cccccccCC---------CCCCCcccccccccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP---EDPTVLLTIAGMLQF---KPIFLGKVP---------RQVPRAATSQRCIRT 115 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp---~d~tllftnAGm~qf---k~~f~g~~~---------p~~~r~~~~QkCiR~ 115 (947)
++|-+.+-+||.++|...|..--+.+ +...-.|.-. .| ++++|-+.+ ....|+=..-+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 57888999999999999886544442 1111122110 01 122222110 124577788899998
Q ss_pred CCccccCCCCCcccccccccCc-ccCcccHHHHHHHHHHhh
Q 002252 116 NDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFS 155 (947)
Q Consensus 116 nDldnVG~t~rHhTfFEMlGn~-SfgdYfK~eai~~awe~l 155 (947)
- +.|.||+.=|-||--. +|.|| ++.++.+=+++
T Consensus 82 e-----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv 115 (269)
T cd00669 82 E-----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLV 115 (269)
T ss_pred C-----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHH
Confidence 3 3478999999998653 66665 44554444443
No 38
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=87.50 E-value=1.2 Score=48.64 Aligned_cols=170 Identities=27% Similarity=0.356 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccccccc-cccccCCCCCCCccccccccccCCc---cccCCCCC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKP-IFLGKVPRQVPRAATSQRCIRTNDV---ENVGRTSR 126 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~-~f~g~~~p~~~r~~~~QkCiR~nDl---dnVG~t~r 126 (947)
++|-.+--+|..++|..++.++.+= -|--.|-| -|+..-.|..-+++-+|+|.|-.|= +|=-+--
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e----------vGAGT~~P~Tflr~Lgpepw~vaYVqPsrRP~DGRYGeNPNRLq- 70 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE----------VGAGTFHPATFLRALGPEPWNVAYVQPSRRPTDGRYGENPNRLQ- 70 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS------------SSGGGSHHHHTTTSSSS-EEEEEEEEEE-GGG--TTTSSS--S-
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc----------cccccCCHHHHHHhcCCCCccccccccCCCCCCCccCCCchHhh-
Confidence 4566777899999999999887652 23346777 3455445555579999999998652 4444433
Q ss_pred cccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCC
Q 002252 127 HHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGA 206 (947)
Q Consensus 127 HhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~ 206 (947)
||.=|..+=-=|-++ ..+.=.+=| +.+||++.. |=+||- +|| |+-=.
T Consensus 71 ~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~~-------------------------hDIRFV-EDn-WEsPt 117 (284)
T PF02091_consen 71 HYYQFQVILKPSPDN-----IQELYLESL-EALGIDPKE-------------------------HDIRFV-EDN-WESPT 117 (284)
T ss_dssp EEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CCC-------------------------S-EEEE-EE--EEETT
T ss_pred hhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cceeEe-ecC-CCCCc
Confidence 444444443333333 111111111 246666654 224442 455 65221
Q ss_pred CCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCCCccc
Q 002252 207 TGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYET 286 (947)
Q Consensus 207 ~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ydt 286 (947)
-|--|-==|+--| .+||=-.-+. .+ ..| .++..-.+.-=+||||||+.|||+.++||.
T Consensus 118 LGAwGlGWEVWld-----------------GMEITQfTYF--QQ-vGG--i~~~pv~~EITYGLERiamylQ~vdnv~dl 175 (284)
T PF02091_consen 118 LGAWGLGWEVWLD-----------------GMEITQFTYF--QQ-VGG--IDCKPVSVEITYGLERIAMYLQGVDNVYDL 175 (284)
T ss_dssp TTEEEEEEEEEET-----------------TCEEEEEEEE--EE-ETT--EE-SS--EEEEEEHHHHHHHHCT-SSGGGS
T ss_pred ccccccccEEEEC-----------------CEEEEEeeee--ee-eCC--ccccccceehhhhHHHHHHHHhCCCeeEee
Confidence 2555655676664 2777644333 33 234 356667788889999999999999999997
No 39
>PRK09350 poxB regulator PoxA; Provisional
Probab=87.49 E-value=2.4 Score=47.80 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccccccc-c-----------ccccCC---------CCCCCcccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKP-I-----------FLGKVP---------RQVPRAATS 109 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~-~-----------f~g~~~---------p~~~r~~~~ 109 (947)
++|.+.+-+||.++|...|..--+.+-+. .+|.+.+|+. | +|-+.+ ....|+...
T Consensus 9 ~~i~~~ir~~f~~~gf~EV~TP~l~~~~~----~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rvf~i 84 (306)
T PRK09350 9 AKIIAEIRRFFADRGVLEVETPILSQATV----TDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPIFQI 84 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecccC----CCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccceEEe
Confidence 67899999999999999885544433110 1233333332 2 221110 124588888
Q ss_pred ccccccCCccccCCCCCcccccccccCc-ccCcccHHHHHHHHHHhhhcccCCCCCceEEEE
Q 002252 110 QRCIRTNDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFSTVEFGLPANRLWISV 170 (947)
Q Consensus 110 QkCiR~nDldnVG~t~rHhTfFEMlGn~-SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~ 170 (947)
.+|.|+... |.||.+=|.||=-. +|.|| ++.++..=+++...++..|-+ .+||
T Consensus 85 ~~~FR~e~~-----~~~H~~EFt~lE~y~~~~d~--~dlm~~~E~li~~i~~~~~~~-~i~~ 138 (306)
T PRK09350 85 CKSFRNEEA-----GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLDCEPAE-SLSY 138 (306)
T ss_pred cceeecCCC-----CCCCCcHHHhhhhhhhCCCH--HHHHHHHHHHHHHHHhcCCce-EEEH
Confidence 899999663 57999988887654 55565 677888877777777664433 3564
No 40
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=83.37 E-value=6.8 Score=47.23 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCC--CCcc-ceeccccccc-cccccccCCC---------CCCCccccccccccCC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPE--DPTV-LLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTND 117 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~--d~tl-lftnAGm~qf-k~~f~g~~~p---------~~~r~~~~QkCiR~nD 117 (947)
+.|-+.+-+||.++|...|..--|.|. ..++ .|+.- .+.| ++.||-+.+- -..|+=..-||.|+-+
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~-~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~ 254 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITH-HNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEG 254 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEee-cccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCC
Confidence 345567789999999988855444441 1111 12110 0112 3344433221 2567778889999855
Q ss_pred ccccCCCCCcccccccccC-cccCcc-----cHHHHHHHHHHhhh
Q 002252 118 VENVGRTSRHHTFFEMLGN-FSFGDY-----FKKEAIQWAWEFST 156 (947)
Q Consensus 118 ldnVG~t~rHhTfFEMlGn-~SfgdY-----fK~eai~~awe~lt 156 (947)
+ +.||..=|.||-- ++|.|| +-++-|..++.-+.
T Consensus 255 ~-----~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~ 294 (496)
T TIGR00499 255 V-----DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELL 294 (496)
T ss_pred C-----CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4 3499999999976 477887 34555555555443
No 41
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=79.12 E-value=2.4 Score=48.36 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcC
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVP 76 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp 76 (947)
..++++.-.++|.+.|.+.+.+..|..
T Consensus 110 l~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 110 ITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 566777777788889999998777754
No 42
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=78.41 E-value=31 Score=42.50 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCCccccccccccCCccccCCCCCcccccccccC-cccCccc-----HHHHHHHHHHhhh
Q 002252 103 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFST 156 (947)
Q Consensus 103 ~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn-~SfgdYf-----K~eai~~awe~lt 156 (947)
..|+-...+|.|+-|. +|.||++=|-||=- .+|.||. -++-|.+.|..+.
T Consensus 343 ~~rVf~i~p~FRaE~s----~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl 398 (586)
T PTZ00425 343 MGDVYTFGPTFRAENS----HTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVL 398 (586)
T ss_pred cCCEEEEeceEeCCCC----CCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHh
Confidence 7888899999999665 47899977777644 4787764 3444666665543
No 43
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=71.68 E-value=18 Score=42.98 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC-C-CCcc-ceeccccccc-cccccccCCC---------CCCCccccccccccCC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP-E-DPTV-LLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTND 117 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp-~-d~tl-lftnAGm~qf-k~~f~g~~~p---------~~~r~~~~QkCiR~nD 117 (947)
+.|-+.+-+||.++|...|..-.|+. + +.-. .|.- +.| ++++|-+.+- ...|+=..-+|.|+-+
T Consensus 140 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~---~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~ 216 (437)
T PRK05159 140 SEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI---DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEE 216 (437)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeE---EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCC
Confidence 34556778999999998886544432 1 1100 1110 001 3444433221 2577888889999854
Q ss_pred ccccCCCCCcccccccccCc-ccCc-c
Q 002252 118 VENVGRTSRHHTFFEMLGNF-SFGD-Y 142 (947)
Q Consensus 118 ldnVG~t~rHhTfFEMlGn~-Sfgd-Y 142 (947)
. + |.||..=|.||--. +|.| |
T Consensus 217 ~---~-t~rHl~EFt~lE~e~a~~~~~ 239 (437)
T PRK05159 217 H---N-TSRHLNEYTSIDVEMGFIDDH 239 (437)
T ss_pred C---C-CcccchhhheeeeeeeecccH
Confidence 3 2 56999999998665 6766 5
No 44
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=70.67 E-value=1.5e+02 Score=36.69 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=57.8
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHH----HcCCCCCC
Q 002252 837 VLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAK----LCGGGGGG 912 (947)
Q Consensus 837 vv~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~----~~gGkGGG 912 (947)
+++..-++..+..+--+|..|+++...+ ++++.. ..+|. +..|.-.+ .|+++.+.++.... ++ -+.||
T Consensus 355 ~ivv~~~~wh~GViGIVAsrl~e~y~rP-~ivls~-~~~g~----~kGS~RSi-~g~~l~~aL~~~~~~~~~ll-~~fGG 426 (575)
T PRK11070 355 GLAMYHPEWHQGVVGILASRIKERFHRP-VIAFAP-AGDGT----LKGSGRSI-QGLHMRDALERLDTLYPGLI-LKFGG 426 (575)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHCCC-EEEEEE-cCCCe----EEEEEeCC-CCCcHHHHHHHhhhcccchh-hccCC
Confidence 3444456777888999999999998876 555543 23332 11121111 26888888877542 33 35566
Q ss_pred cccceeeccC-CcccHHHHHHHHHHHHHHHh
Q 002252 913 RPNFAQAGGR-KPENLSIALEKARADLVSVL 942 (947)
Q Consensus 913 k~~~AQG~g~-~~~~l~~al~~~~~~l~~~L 942 (947)
.+ +| +|.+ ..++++++.+.+.+.+.+.+
T Consensus 427 H~-~A-aG~ti~~e~l~~f~~~l~~~~~~~~ 455 (575)
T PRK11070 427 HA-MA-AGLSLEEDKFELFQQRFGELVTEWL 455 (575)
T ss_pred hH-Hh-CcceeCHHHHHHHHHHHHHHHHHhc
Confidence 53 23 2333 67788887777777665544
No 45
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=68.85 E-value=6.9 Score=45.72 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=55.2
Q ss_pred cccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-ccCCc---cccccceEEe----chhhhHHHH---hhcC
Q 002252 263 NIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVS-YAQSN---DRTNLNLKII----GDHLRAIVY---LLSD 331 (947)
Q Consensus 263 ~iDtGmGlERi~~vlqg~~s~ydtdlf~p~i~~i~~~~~~~-y~~~~---~~~~~~~r~i----aDH~R~~~~---~i~D 331 (947)
.|+||-||=-+-++-.|..+.|-..+|+|+.+...+++.+. +.+.- .+....+.++ ||-+-+-.| +|..
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtElige 151 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGE 151 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhcc
Confidence 58999999999999999999999999999999999988654 22100 0122345555 555555544 6889
Q ss_pred CCccC
Q 002252 332 GVFPS 336 (947)
Q Consensus 332 G~~Ps 336 (947)
|++||
T Consensus 152 Galps 156 (636)
T KOG1501|consen 152 GALPS 156 (636)
T ss_pred ccchh
Confidence 99987
No 46
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=65.49 E-value=6.6 Score=37.94 Aligned_cols=24 Identities=29% Similarity=0.453 Sum_probs=20.6
Q ss_pred HHHHHhhhcccCCCCCceEEEEeC
Q 002252 149 QWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 149 ~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
+-.-++|+++||||++|+|+.++.
T Consensus 79 ~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 79 PRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred HHHHHHHHHHcCCCcccEEEEEEc
Confidence 445688999999999999999884
No 47
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=62.25 E-value=3.7 Score=26.63 Aligned_cols=12 Identities=33% Similarity=0.658 Sum_probs=10.1
Q ss_pred ccccceeeecCC
Q 002252 9 LPCGHFLFKGAT 20 (947)
Q Consensus 9 ~~~~~~~~~~~~ 20 (947)
-+|+.||||.-|
T Consensus 5 ~~CknffWK~~t 16 (18)
T PF03002_consen 5 AGCKNFFWKTFT 16 (18)
T ss_pred ccccceeecccc
Confidence 489999999765
No 48
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=57.98 E-value=45 Score=40.28 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCC--CCc-cceeccccccc-cccccccCCC---------CCCCccccccccccCC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPE--DPT-VLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTND 117 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~--d~t-llftnAGm~qf-k~~f~g~~~p---------~~~r~~~~QkCiR~nD 117 (947)
+.|-+.+-+||.++|...|..--|.|. ... -.|+.- .+.| ++.||-+.+- -..|+=..-||.|+-+
T Consensus 176 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~-~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~ 254 (491)
T PRK00484 176 SKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITH-HNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEG 254 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeec-cccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCC
Confidence 345566778999999988855444441 111 122100 0111 2223322111 2567778889999866
Q ss_pred ccccCCCCCcccccccccC-cccCccc-----HHHHHHHHHHhh
Q 002252 118 VENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFS 155 (947)
Q Consensus 118 ldnVG~t~rHhTfFEMlGn-~SfgdYf-----K~eai~~awe~l 155 (947)
++ .||..=|.||=- ++|.||- -++-|...|.-+
T Consensus 255 ~~-----~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~ 293 (491)
T PRK00484 255 ID-----TRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAV 293 (491)
T ss_pred CC-----CCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 53 499999999866 5788872 344455554443
No 49
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.94 E-value=4.7 Score=27.14 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.5
Q ss_pred CCCCCCceE
Q 002252 207 TGPCGPCSE 215 (947)
Q Consensus 207 ~GpcGpcsE 215 (947)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 499999974
No 50
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=56.54 E-value=17 Score=44.34 Aligned_cols=94 Identities=21% Similarity=0.344 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccccc------cccccccCCC---------CCCCcccccccccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF------KPIFLGKVPR---------QVPRAATSQRCIRT 115 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qf------k~~f~g~~~p---------~~~r~~~~QkCiR~ 115 (947)
+.|-+.|-+||.++|...|..-.|+... +..|...| ++++|-+.+- ...|+=..-+|.|+
T Consensus 217 s~i~~~~R~fl~~~gFiEV~TP~L~~~~-----~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 217 SRVCQYFRQFLIDSDFCEIHSPKIINAP-----SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCccccCC-----CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 4667788899999999988655554311 11122223 3344543321 35778888899999
Q ss_pred CCccccCCCCCcccccccccC-cccC-cccHHHHHHHHHHhh
Q 002252 116 NDVENVGRTSRHHTFFEMLGN-FSFG-DYFKKEAIQWAWEFS 155 (947)
Q Consensus 116 nDldnVG~t~rHhTfFEMlGn-~Sfg-dYfK~eai~~awe~l 155 (947)
-+ .+ |.||++=|.||=- .+|+ +|. |.++.+=+++
T Consensus 292 E~---s~-T~RHl~EFt~Le~E~~~~~~y~--evm~~~e~l~ 327 (550)
T PTZ00401 292 EN---SN-THRHLTEFVGLDVEMRINEHYY--EVLDLAESLF 327 (550)
T ss_pred CC---CC-CCCCccchhhhhhhhHhcCCHH--HHHHHHHHHH
Confidence 44 33 7899999999987 7885 553 3444443333
No 51
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=54.92 E-value=13 Score=35.67 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-.+---++|.+.||+||+|+||.++.
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 56666667788999999999999998865
No 52
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=53.37 E-value=19 Score=38.33 Aligned_cols=106 Identities=25% Similarity=0.385 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccc--------ccccc--------------c--------cccccCC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAG--------MLQFK--------------P--------IFLGKVP 100 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAG--------m~qfk--------------~--------~f~g~~~ 100 (947)
..|.+.+.+.|.++|+..|....+.|-+ ++ ...| |..|. | ++.....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV--LF-FKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH--HH-hhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 5688899999999999988877777622 11 1111 22221 1 1111111
Q ss_pred C--C-CCCccccccccccCCccccCCCCCcccccccccCcccCc-----ccHHHHHHHHHHhhhcccCCC
Q 002252 101 R--Q-VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVEFGLP 162 (947)
Q Consensus 101 p--~-~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfgd-----YfK~eai~~awe~lt~~l~l~ 162 (947)
+ + .-|++.+.+|.|..--..-|. .|-+- |.|.|-+.||+ ..-.|.+++++++|. .||++
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~-~lgl~ 149 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIAR-ELGLP 149 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHH-HcCCc
Confidence 1 1 126788888999732222333 24344 89999999975 345688999999986 46885
No 53
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=53.12 E-value=16 Score=35.31 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=21.9
Q ss_pred HHHHHHhhhcccCCCCCceEEEEeCC
Q 002252 148 IQWAWEFSTVEFGLPANRLWISVYED 173 (947)
Q Consensus 148 i~~awe~lt~~l~l~~~~l~vt~~~~ 173 (947)
.+--.|+|.++|+|||+|+|+++|.-
T Consensus 77 sa~l~~il~~~L~l~~~rv~I~f~dl 102 (115)
T KOG1759|consen 77 SAALTEILEKELSLDPDRVYIKFYDL 102 (115)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEecC
Confidence 34456899999999999999999863
No 54
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=52.35 E-value=15 Score=41.99 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCc
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSA 72 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~ 72 (947)
..++++...++|.+.|.+++...
T Consensus 113 l~~~~e~i~~iF~~mGF~~~~gp 135 (335)
T COG0016 113 LTQTIEEIEDIFLGMGFTEVEGP 135 (335)
T ss_pred HHHHHHHHHHHHHHcCceeccCC
Confidence 56788888888889999888755
No 55
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=47.33 E-value=2.4e+02 Score=26.34 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=28.5
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHHHhcC------CCeEEEEEeecCCCcEEEEE
Q 002252 833 NEIRVLVESMDDMDADSLKSAAEYLVDTLQ------DPAAVVLGSCPDEGKVSLIA 882 (947)
Q Consensus 833 ~~~~vv~~~~~~~d~~~L~~la~~l~~~~~------~~~vvll~s~~~~~k~~~v~ 882 (947)
.+..+++..++..+...++..|..+.+..+ +..++++++ ..+.++.+.+
T Consensus 21 t~~~i~Vvtv~~~~~~~~~~~A~~~~~~~~~g~~~~~~gvlilv~-~~~r~~~i~~ 75 (119)
T PF04536_consen 21 TGVQIVVVTVPSLPGQDIEDYAQQLFERWGLGDGECNNGVLILVS-KDDRKVRIET 75 (119)
T ss_dssp C--EEEEEEESB-TTS-HHHHHHHHHHHHSTTCCCTSSEEEEEEE-TTTTEEEEEE
T ss_pred hCCEEEEEEEcCCCCCCHHHHHHHHHHHhCCCCccccCcEEEEEE-cCCCEEEEEE
Confidence 345666666776655667778877777621 235777777 6666655543
No 56
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=43.83 E-value=20 Score=43.16 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=36.7
Q ss_pred CceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccc-cCCCccccCccCcccccchHHHHHHHHhCCCC
Q 002252 212 PCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK-KDDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (947)
Q Consensus 212 pcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~-~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s 282 (947)
|..||+..+.. +.+||||.|.=.++=+- .+-| + |=+..++==||||||+|++.-|.+.
T Consensus 425 PS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL~~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 425 PSMEIFGYHPG-----------LKKWVEVGNSGIFRPEMLRPMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred CeeEEEEEecC-----------CCcEEEEeCcCccCHHHHHhcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 57888875421 24699999875544111 1223 1 1123367779999999999988754
No 57
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=42.36 E-value=96 Score=35.01 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccc-----eeccccccccccccccC---CC------------------C
Q 002252 49 SGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVL-----LTIAGMLQFKPIFLGKV---PR------------------Q 102 (947)
Q Consensus 49 ~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tll-----ftnAGm~qfk~~f~g~~---~p------------------~ 102 (947)
.-.+|++.+.+.|+++|...|.+..+-|-+ ++ ..+..|..|..-= |.. .| .
T Consensus 10 ~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~--~~~~~~~~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 10 RKEEIERQLQDVFRSWGYQEIITPTLEYLD--TLSAGGGILNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHHHHHcCCeeccCcchhhHH--HhcccCCcchhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 357899999999999999999665554511 11 2344455554310 210 11 1
Q ss_pred CCCccccccccccCCccccCCC-CCcccccccccCcccCcccHHHHHHHHHHhhhcccCCC
Q 002252 103 VPRAATSQRCIRTNDVENVGRT-SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 162 (947)
Q Consensus 103 ~~r~~~~QkCiR~nDldnVG~t-~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~ 162 (947)
..|.+-+.+|.|.+-- .-|+. ..+.+-||+.|.=|. .--.|.|.+|++.|.+ +|+.
T Consensus 87 p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~--~adaEvi~l~~~~l~~-lg~~ 143 (314)
T TIGR00443 87 PLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGP--AADAEVIALLIEALKA-LGLK 143 (314)
T ss_pred CeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCc--hhHHHHHHHHHHHHHH-cCCC
Confidence 1266677778886442 23333 455788999997766 2347999999999974 7875
No 58
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=42.01 E-value=2.6e+02 Score=36.32 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHH
Q 002252 849 SLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLS 928 (947)
Q Consensus 849 ~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQG~g~~~~~l~ 928 (947)
.+..+++.|.+-.+-. +.+++....++++.+. +.|.+ .++++.++ +.+| |||....|=+..++ ..++
T Consensus 602 ~~a~~ad~Ll~I~gv~-asfV~~e~~d~~i~IS-aRS~g----~inVq~Ia----e~~G--GGGH~~AAGaqi~~-~tle 668 (838)
T PRK14538 602 FLAQVAESVLNIQNVD-AAFMIAKISDNTIAIS-ARSYN----EINVQTIM----EQME--GGGHLNSAATQIKG-TNIK 668 (838)
T ss_pred hHHHHHHHHhcccCee-EEEEEEEEcCCEEEEE-EEeCC----CCCHHHHH----HHhC--CCccHhhheEEeCC-CCHH
Confidence 3567778777754433 3344431335554443 44432 37776654 4455 67776665444332 2367
Q ss_pred HHHHHHHHHHH
Q 002252 929 IALEKARADLV 939 (947)
Q Consensus 929 ~al~~~~~~l~ 939 (947)
++++.+.+.++
T Consensus 669 e~~~~L~~~I~ 679 (838)
T PRK14538 669 TVTQTLKHLLK 679 (838)
T ss_pred HHHHHHHHHHH
Confidence 77777666664
No 59
>PLN02850 aspartate-tRNA ligase
Probab=40.71 E-value=45 Score=40.71 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCC--CC-ccceeccccccc-cccccccCCC---------CCCCccccccccccCC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPE--DP-TVLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTND 117 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~--d~-tllftnAGm~qf-k~~f~g~~~p---------~~~r~~~~QkCiR~nD 117 (947)
+.|-+.|-+||.++|...|..--|++. ++ .-.|.- ..| ++++|-+.+- ...|+=..-+|.|+-+
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~ 305 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAED 305 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCC
Confidence 466778889999999988865555441 22 112221 011 4455543221 3568888899999944
Q ss_pred ccccCCCCCcccccccccCc-ccC
Q 002252 118 VENVGRTSRHHTFFEMLGNF-SFG 140 (947)
Q Consensus 118 ldnVG~t~rHhTfFEMlGn~-Sfg 140 (947)
. .|.||.+=|-||=-. +|+
T Consensus 306 s----~t~RHl~EFt~Le~Em~~~ 325 (530)
T PLN02850 306 S----FTHRHLCEFTGLDLEMEIK 325 (530)
T ss_pred C----CCCccchhhccchhhhhhh
Confidence 2 588999999999665 776
No 60
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=39.22 E-value=25 Score=33.74 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=17.9
Q ss_pred HHHHHhhhcccCCCCCceEEEEeC
Q 002252 149 QWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 149 ~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
+---+||.+.||||++|+|+.++.
T Consensus 77 ~~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 77 AAITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHHhCCCcCceEEEEEE
Confidence 334578999999999999998864
No 61
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=38.75 E-value=1.1e+02 Score=35.68 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhhCCCeeeCCcCCcCCC----Cccceeccccccc----------ccccc-cc-------CCCCCCC
Q 002252 48 SSGDSIRKRFLDFYASRGHKVLPSASLVPED----PTVLLTIAGMLQF----------KPIFL-GK-------VPRQVPR 105 (947)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d----~tllftnAGm~qf----------k~~f~-g~-------~~p~~~r 105 (947)
+...+|++++.+-|+++|...|....+-|-| .+--.+..-|..| .|=++ .. ..+...|
T Consensus 5 ~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R 84 (373)
T PRK12295 5 SASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPAR 84 (373)
T ss_pred hhHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeE
Confidence 4567899999999999999999665554511 0000111223333 33221 00 1122236
Q ss_pred ccccccccccCCccccCCC-CCcccccccccCcccCcccHHHHHHHHHHhhhcccCCC
Q 002252 106 AATSQRCIRTNDVENVGRT-SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 162 (947)
Q Consensus 106 ~~~~QkCiR~nDldnVG~t-~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~ 162 (947)
.+-+++|.|.+ -|+. --|..-||.+|.-+-- +---|.|..+++.|. .+|++
T Consensus 85 ~~Y~g~VfR~~----~gr~rEf~Q~GvEiiG~~~~~-~aDaEvi~l~~~~L~-~lgl~ 136 (373)
T PRK12295 85 YAYLGEVFRQR----RDRASEFLQAGIESFGRADPA-AADAEVLALALEALA-ALGPG 136 (373)
T ss_pred EEEEccEEECC----CCCCCcceEeeEEeeCCCCCc-cchHHHHHHHHHHHH-HcCCC
Confidence 77778888875 3433 4457889999965421 236899999999886 57886
No 62
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=38.42 E-value=92 Score=32.60 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=51.8
Q ss_pred CccccccCccccccccccceEEEEeeeccccceEE----------EEEEecHHHHHHHHHHHHHHHHHHHHcCCChhhHH
Q 002252 721 GVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRR----------IEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVT 790 (947)
Q Consensus 721 g~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~R----------I~~v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~l~ 790 (947)
|.+.++.+.-|-.|.|.+... +..+++..|+-= =.+.|...-.+.-++....+.+..+.+......-.
T Consensus 68 GTsAC~~~~FyC~N~g~~p~~--i~~s~VnDGICDy~~CCDGSDE~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~ 145 (176)
T PF12999_consen 68 GTSACSNGKFYCENKGHIPRY--IPSSRVNDGICDYDICCDGSDESGGKCPNTCAELGKEYREELEEEEEIYKEGLKIRQ 145 (176)
T ss_pred ccccCcCceEeeccCCCCCce--eehhhhcCCcCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556688888888753 566678888742 11345555555544444444444444333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 791 TRVEGLLEDLRTARNEVANLRAKAAVYK 818 (947)
Q Consensus 791 ~~v~~L~~e~k~l~k~l~~L~~~la~~~ 818 (947)
+.+++-+...+++++++.+|++++....
T Consensus 146 ~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 146 ELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455566666666666655443
No 63
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=38.39 E-value=16 Score=40.13 Aligned_cols=27 Identities=7% Similarity=0.178 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcC
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVP 76 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp 76 (947)
..++++.-.++|.+.|...+..+++..
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~s 45 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVES 45 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEEE
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEEe
Confidence 567888888899999999999877733
No 64
>smart00438 ZnF_NFX Repressor of transcription.
Probab=38.22 E-value=14 Score=26.61 Aligned_cols=11 Identities=45% Similarity=1.331 Sum_probs=8.8
Q ss_pred CCCCCCceEEE
Q 002252 207 TGPCGPCSEIY 217 (947)
Q Consensus 207 ~GpcGpcsEi~ 217 (947)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999644
No 65
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=37.55 E-value=43 Score=39.13 Aligned_cols=108 Identities=20% Similarity=0.298 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccc------eeccccccccccccccC---------------------CC
Q 002252 49 SGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVL------LTIAGMLQFKPIFLGKV---------------------PR 101 (947)
Q Consensus 49 ~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tll------ftnAGm~qfk~~f~g~~---------------------~p 101 (947)
.-..|++.+.+.|+++|...|....+=+-| ++ .++.-|..|..-..|.. .+
T Consensus 19 ~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e--~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~ 96 (391)
T PRK12292 19 KIEEIRRRLLDLFRRWGYEEVITPTLEYLD--TLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRP 96 (391)
T ss_pred HHHHHHHHHHHHHHHcCCceeeCcchhhHH--HHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCC
Confidence 467899999999999999999554443311 11 11223444443211110 01
Q ss_pred CCCCccccccccccCCccccCCC-CCcccccccccCcccCcccHHHHHHHHHHhhhcccCCC
Q 002252 102 QVPRAATSQRCIRTNDVENVGRT-SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 162 (947)
Q Consensus 102 ~~~r~~~~QkCiR~nDldnVG~t-~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~ 162 (947)
...|++-+++|.|.+. ..-|+. --|..-||.+|.=|. +---|.|.+|++.|. .+|++
T Consensus 97 ~p~r~~y~g~vfR~~~-~~~gr~ref~Q~g~EiiG~~~~--~aDaEvi~l~~~~l~-~lgl~ 154 (391)
T PRK12292 97 GPLRLCYAGNVFRAQE-RGLGRSREFLQSGVELIGDAGL--EADAEVILLLLEALK-ALGLP 154 (391)
T ss_pred CCeEEEeeceeeecCC-CcCCCccchhccceEEeCCCCc--hHHHHHHHHHHHHHH-HcCCC
Confidence 1226778888888753 344544 345778999997665 345899999999986 57886
No 66
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=36.71 E-value=51 Score=36.06 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccce------eccccccc----------ccccc-ccC------CC--CC-
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLL------TIAGMLQF----------KPIFL-GKV------PR--QV- 103 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllf------tnAGm~qf----------k~~f~-g~~------~p--~~- 103 (947)
-+.|++.+.+.|+++|...|....+.|-| ++. ...-|..| .|-++ ... .. +.
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~--~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p 82 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTE--LFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLP 82 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHH--HhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCC
Confidence 46799999999999999999777776622 110 11112222 22221 000 01 12
Q ss_pred CCccccccccccCCccccCCC-CCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCC
Q 002252 104 PRAATSQRCIRTNDVENVGRT-SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163 (947)
Q Consensus 104 ~r~~~~QkCiR~nDldnVG~t-~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~ 163 (947)
.|+..+++|.|.+.-.. |+. ..+..-|||+|.-|.- --.|.|.+++++|. .+|++.
T Consensus 83 ~k~~y~g~vfR~e~~~~-g~~re~~Q~g~Eiig~~~~~--~daE~i~l~~~~l~-~lg~~~ 139 (261)
T cd00773 83 LKLYYIGPVFRYERPQK-GRYREFYQVGVEIIGSDSPL--ADAEVIALAVEILE-ALGLKD 139 (261)
T ss_pred eEEEEEcCEEecCCCCC-CCccceEEeceeeeCCCChH--HHHHHHHHHHHHHH-HcCCCc
Confidence 37788889999855432 333 3446778889885552 23789999999986 578654
No 67
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=36.19 E-value=47 Score=38.39 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=48.8
Q ss_pred HhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccC
Q 002252 183 KEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 262 (947)
Q Consensus 183 ~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~ 262 (947)
.++|+..=+-.+=-++-.|+- + |--||+|--+ |..... ...-++.|+||.+. -=|.--+=-.| -+|.+
T Consensus 257 ~qfGFe~F~FrpDEK~SKYYv--P----~TQTEVyAyH-PkL~gs--~~kysdgWiEiATF--GlYSP~ALaeY-~Id~p 324 (536)
T COG2024 257 RQFGFEKFRFRPDEKKSKYYV--P----GTQTEVYAYH-PKLVGS--IEKYSDGWIEIATF--GLYSPIALAEY-GIDYP 324 (536)
T ss_pred HHhCccceeeccccccccccC--C----CccceEEEec-cccccc--ccccCCCcEEEEee--cccChHHHHHc-CCCCc
Confidence 345655433333222334552 1 4579988643 222111 11346789999953 23322111111 25666
Q ss_pred cccccchHHHHHHHHhCCCCC
Q 002252 263 NIDTGLGLERIARILQKVPNN 283 (947)
Q Consensus 263 ~iDtGmGlERi~~vlqg~~s~ 283 (947)
+.--|.|.||+|+||.|.+.+
T Consensus 325 VMNLGlGVERlaMIl~g~~DV 345 (536)
T COG2024 325 VMNLGLGVERLAMILHGADDV 345 (536)
T ss_pred eeecchhHHHHHHHHhCchHH
Confidence 777899999999999987543
No 68
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=35.95 E-value=12 Score=41.80 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=52.3
Q ss_pred cccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCC
Q 002252 127 HHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG 205 (947)
Q Consensus 127 HhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l-~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G 205 (947)
+-.+|.|.|...|-.|- +...+...++| +..|+.++.+ |+-.+.......+.+.+.+|+|++++.. .+.
T Consensus 206 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~l-~~~g~~~~di~~~~~h~~~~~~~~~~~~~lgl~~~~~~~--------~~~ 275 (320)
T cd00830 206 GDPYLVMDGREVFKFAV-RLMPESIEEAL-EKAGLTPDDIDWFVPHQANLRIIEAVAKRLGLPEEKVVV--------NLD 275 (320)
T ss_pred cCccEEEcChHHHHHHH-HhhHHHHHHHH-HHcCCCHHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhh--------hHH
Confidence 34567777776554332 22223333444 3579998887 6667777888888899999999998842 234
Q ss_pred CCCCCCCce
Q 002252 206 ATGPCGPCS 214 (947)
Q Consensus 206 ~~GpcGpcs 214 (947)
..|+||+|+
T Consensus 276 ~~Gn~~sas 284 (320)
T cd00830 276 RYGNTSAAS 284 (320)
T ss_pred hhCcHHHHH
Confidence 568999887
No 69
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=35.46 E-value=81 Score=37.19 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=70.3
Q ss_pred hhcccCCCCCCCHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceec--------cccccccccccccC-------CC-
Q 002252 38 EVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTI--------AGMLQFKPIFLGKV-------PR- 101 (947)
Q Consensus 38 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftn--------AGm~qfk~~f~g~~-------~p- 101 (947)
-.+|--+....--..|++++.+.|+++|...|....+-|-| ++... -.|..|.+- .|.. .+
T Consensus 9 G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~--~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~ 85 (423)
T PRK12420 9 GTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYE--LMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIP 85 (423)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHH--HHhcccCCCcccccceEEEecC-CCceecccccccHH
Confidence 33333333333467899999999999999999665555522 22211 114444431 1211 01
Q ss_pred -----------CCC-CccccccccccCCccccCCCCC-cccccccccCcccCcccHHHHHHHHHHhhhcccCC
Q 002252 102 -----------QVP-RAATSQRCIRTNDVENVGRTSR-HHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGL 161 (947)
Q Consensus 102 -----------~~~-r~~~~QkCiR~nDldnVG~t~r-HhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l 161 (947)
+.+ |.+.+.+|.|..- ..-|+... |..-||+.|.=|. .---|.|..|++.|. .||+
T Consensus 86 iaR~va~~~~~~~p~r~~y~g~vfR~~~-~~~gr~rE~~Q~g~EiiG~~~~--~adaEvi~la~~~l~-~lg~ 154 (423)
T PRK12420 86 FAKVVAMNPNIRLPFKRYEIGKVFRDGP-IKQGRFREFIQCDVDIVGVESV--MAEAELMSMAFELFR-RLNL 154 (423)
T ss_pred HHHHHHhCcCCCCCeeEEEEcceECCCC-CCCCccceeEECCeeeECCCCC--cccHHHHHHHHHHHH-HCCC
Confidence 112 5666778888633 23354433 4677999996554 335899999999987 5788
No 70
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=34.18 E-value=1.2e+02 Score=35.96 Aligned_cols=170 Identities=19% Similarity=0.298 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcCCC---C----------ccceecccccccccccc-cc--------C-CCCCCCc
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVPED---P----------TVLLTIAGMLQFKPIFL-GK--------V-PRQVPRA 106 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp~d---~----------tllftnAGm~qfk~~f~-g~--------~-~p~~~r~ 106 (947)
..+|.+...+||..+|...|-...|++.+ . ..+|..-.-...+|..+ +. . .+.--|+
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RI 285 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKI 285 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeE
Confidence 47888889999999999999999887521 0 00111111111111111 10 0 0111257
Q ss_pred cccccccccCCccccCCCCCcccccccccCcccCc-ccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhc
Q 002252 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-YFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEV 185 (947)
Q Consensus 107 ~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfgd-YfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~ 185 (947)
....+|.|... .| ..|..=|+|+|--.+|+ ..-.|+...+-++|. .|||+ | +
T Consensus 286 FEIG~VFR~E~---~g--~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~-~LGI~----f-~---------------- 338 (417)
T PRK09537 286 FEIGPCYRKES---DG--KEHLEEFTMVNFCQMGSGCTRENLENIIDDFLK-HLGID----Y-E---------------- 338 (417)
T ss_pred EEEeceEecCC---CC--CCCcceEEEEEEEEeCCchHHHHHHHHHHHHHH-HCCCC----c-E----------------
Confidence 77778888743 22 45777788888777775 223567777777776 57775 1 1
Q ss_pred CCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCccc
Q 002252 186 GVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNID 265 (947)
Q Consensus 186 g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iD 265 (947)
|. .++ + +.. |+|-+|.++ +.||++-+|=+-+- .-. --|+.+++=
T Consensus 339 ------i~----s~~-~-fi~----GR~adI~~g-----------------~~el~~G~fGEi~V--Le~-fGI~~PVva 382 (417)
T PRK09537 339 ------II----GDN-C-MVY----GDTIDIMHG-----------------DLELSSAVVGPIPL--DRE-WGIDKPWIG 382 (417)
T ss_pred ------Ee----cCC-c-cee----cCeEEEEeC-----------------CEEEeeEEEEEEeh--hhh-cCCCCceEE
Confidence 11 112 1 122 567788852 25776656665521 111 246677899
Q ss_pred ccchHHHHHHHHhCCCC
Q 002252 266 TGLGLERIARILQKVPN 282 (947)
Q Consensus 266 tGmGlERi~~vlqg~~s 282 (947)
-|+|||||+++..|..+
T Consensus 383 ~EIdLerL~~~~~g~~~ 399 (417)
T PRK09537 383 AGFGLERLLKVKHGYKN 399 (417)
T ss_pred EEEeHHHHHHHHhCcHH
Confidence 99999999999988743
No 71
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=32.33 E-value=1.3e+02 Score=34.46 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCh----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 762 EAFIEYINARDSYMKHLCSTLKVKD----EEVTTRVEGLLEDLRTARNEVANLRA 812 (947)
Q Consensus 762 ~~A~~~~~~~~~~l~~l~~~L~~~~----~~l~~~v~~L~~e~k~l~k~l~~L~~ 812 (947)
....++-+...+++....+.|+.|. +++.++|..|..+++.|+|++..|++
T Consensus 263 na~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 263 NALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445666677778888889999884 56666666666666666666665543
No 72
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=31.88 E-value=2.3e+02 Score=31.75 Aligned_cols=66 Identities=18% Similarity=0.340 Sum_probs=38.6
Q ss_pred EEEEEEecCCCHHHHHHHHHHHHHh--cC----CCeEEEEEeecCCCcEEEEEEeccc-hhcccccHHHHHHHHH
Q 002252 836 RVLVESMDDMDADSLKSAAEYLVDT--LQ----DPAAVVLGSCPDEGKVSLIAAFSQG-IVDLGIQAGKFIGPIA 903 (947)
Q Consensus 836 ~vv~~~~~~~d~~~L~~la~~l~~~--~~----~~~vvll~s~~~~~k~~~v~~~s~~-~~~~~i~a~~l~k~l~ 903 (947)
.+++..++....+.+...+..+-++ ++ ++.+++|+. .++.+..+.+.-.-+ .. -..+++.++++.+
T Consensus 65 QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa-~~dr~~rIevGyGLEg~l-tD~~a~~iIr~~i 137 (271)
T COG1512 65 QIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVA-MNDRRVRIEVGYGLEGVL-TDAQAGRIIRETI 137 (271)
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEE-cCCCeEEEEEecCccccc-ChHHHHHHHHhhh
Confidence 4455556655556677777777666 32 334777776 667677776654322 11 1356777776643
No 73
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=31.78 E-value=67 Score=35.90 Aligned_cols=114 Identities=11% Similarity=0.035 Sum_probs=70.4
Q ss_pred chhhcccCCCCCCCHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccccccccccccC----------------
Q 002252 36 TEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKV---------------- 99 (947)
Q Consensus 36 ~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~~f~g~~---------------- 99 (947)
|.-.+|--+.....-++|++.+.+-|+++|...|..-.+=--+.-.......|..|.+- .|..
T Consensus 8 p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a 86 (281)
T PRK12293 8 PQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDE-KNHQISLRADSTLDVVRIVT 86 (281)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECC-CCCEEEECCcCCHHHHHHHH
Confidence 44444444444334678999999999999999886654422110000122334444431 1110
Q ss_pred -----CCCCCCccccccccccCCccccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCC
Q 002252 100 -----PRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLP 162 (947)
Q Consensus 100 -----~p~~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~ 162 (947)
.+...|++-+++|.|... ---|..-.|++|.-|. .|.|.+|++.|. .+|++
T Consensus 87 ~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~-----~Evi~la~~~l~-~lgl~ 142 (281)
T PRK12293 87 KRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDL-----SEILNIAAEIFE-ELELE 142 (281)
T ss_pred HhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCCCH-----HHHHHHHHHHHH-HcCCC
Confidence 011237888888998742 2445777899999885 599999999886 57885
No 74
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.72 E-value=2.2e+02 Score=25.49 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHH---HHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 766 EYINARDSYMKHLC---STLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYK 818 (947)
Q Consensus 766 ~~~~~~~~~l~~l~---~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~ 818 (947)
+.+......+..|. ..|+.....+...|.+|....+++++.+..+..++....
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555 667777778888899999999999999888887776543
No 75
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=30.29 E-value=28 Score=38.86 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC-CCCcc--ceeccccccccc-cccccCC---------CCCCCccccccccccCC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP-EDPTV--LLTIAGMLQFKP-IFLGKVP---------RQVPRAATSQRCIRTND 117 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tl--lftnAGm~qfk~-~f~g~~~---------p~~~r~~~~QkCiR~nD 117 (947)
++|-+.+-+||.++|...|.+=-|++ ..+.. .++..=- ..+. ++|-+.+ ....|+-...+|.|..
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~e- 82 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRDE- 82 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeCC-
Confidence 46778889999999998885544443 22111 2221100 0011 1132211 1346888889999983
Q ss_pred ccccCCCCCcccccccccCc-ccCcccHHHHHHHHHHhhh
Q 002252 118 VENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFST 156 (947)
Q Consensus 118 ldnVG~t~rHhTfFEMlGn~-SfgdYfK~eai~~awe~lt 156 (947)
+.+ ++||. -|.|++-. +|.|| ++.++..=+++.
T Consensus 83 --~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~ 116 (280)
T cd00777 83 --DLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred --CCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHH
Confidence 344 56665 88888754 77776 445555444443
No 76
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=29.87 E-value=47 Score=39.96 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcC
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSAS 73 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~s 73 (947)
..++|+.+-++|.+.|.+.++..|
T Consensus 223 l~~~~~ei~~if~~mGF~e~~~g~ 246 (492)
T PLN02853 223 LLKVRQQFRKIFLQMGFEEMPTNN 246 (492)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCC
Confidence 578999999999999999996443
No 77
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=27.58 E-value=3.1e+02 Score=34.29 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccc-cccc-----------cccc-cCCCC---------------
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGML-QFKP-----------IFLG-KVPRQ--------------- 102 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~-qfk~-----------~f~g-~~~p~--------------- 102 (947)
.+|-+.+.+.+.+.|+..|..-.+++.+ |+- -+|-. .|++ +.|- ...|+
T Consensus 278 ~~i~~~~~~~~~~~G~~~v~tP~l~~~~--l~~-~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~L 354 (639)
T PRK12444 278 NELEAFLREIQKEYNYQEVRTPFMMNQE--LWE-RSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYREL 354 (639)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCCHH--HHh-hcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhC
Confidence 4566777777888999999776666522 222 22311 1111 1121 11110
Q ss_pred CCCccccccccccCCcc--ccCCCCCcccccccccCcccCcc--cHH---HHHHHHHHhhhcccCCCCCceEEEE----e
Q 002252 103 VPRAATSQRCIRTNDVE--NVGRTSRHHTFFEMLGNFSFGDY--FKK---EAIQWAWEFSTVEFGLPANRLWISV----Y 171 (947)
Q Consensus 103 ~~r~~~~QkCiR~nDld--nVG~t~rHhTfFEMlGn~SfgdY--fK~---eai~~awe~lt~~l~l~~~~l~vt~----~ 171 (947)
.-|+....+|.|- ... --|.. |=+- |.|.+-++|+.= -.. +.+.++++++ +.|||| =++-+.. |
T Consensus 355 P~r~~~~g~~fR~-E~~~~~~Gl~-R~re-F~q~d~~~f~~~~~~~~e~~~~~~~~~~i~-~~lgl~-~~~~~~~r~~~~ 429 (639)
T PRK12444 355 PIRMCEFGQVHRH-EFSGALNGLL-RVRT-FCQDDAHLFVTPDQIEDEIKSVMAQIDYVY-KTFGFE-YEVELSTRPEDS 429 (639)
T ss_pred CceeEEeccccCC-CCCcCCcCcc-eeee-eEEccEEEECCHHHHHHHHHHHHHHHHHHH-HHcCCc-EEEEEECCcccc
Confidence 1255566677775 111 11322 3333 899999999741 223 4788899988 579995 3332221 2
Q ss_pred CChHHHHHHHHH-------hcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeec
Q 002252 172 EDDDEAFEIWNK-------EVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDF 220 (947)
Q Consensus 172 ~~D~e~~~iW~~-------~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~ 220 (947)
-||+|..+.|.+ .+|+| ...|-++ |. -=||+.|+....
T Consensus 430 ~G~~e~~~~~~~~l~~~l~~~~~~--------y~~~~~~-ga--~Y~~~~e~~~~~ 474 (639)
T PRK12444 430 MGDDELWEQAEASLENVLQSLNYK--------YRLNEGD-GA--FYGPKIDFHIKD 474 (639)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCC--------ceeccCC-cc--cccceEEEEeec
Confidence 357777776663 22433 2344443 22 348889988754
No 78
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.74 E-value=34 Score=39.60 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=17.6
Q ss_pred ccCcccccchHHHHHHHHhCCCC
Q 002252 260 KQKNIDTGLGLERIARILQKVPN 282 (947)
Q Consensus 260 ~~~~iDtGmGlERi~~vlqg~~s 282 (947)
..--.=-||||||||++|=+-|.
T Consensus 293 ~~igwafglgLerLAMll~~IpD 315 (436)
T KOG2783|consen 293 NYIGWAFGLGLERLAMLLFDIPD 315 (436)
T ss_pred ceeeeeeeccHHHHHHHHhcCcc
Confidence 33445569999999999977763
No 79
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=26.25 E-value=2.4e+02 Score=26.04 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCC
Q 002252 847 ADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGG 908 (947)
Q Consensus 847 ~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gG 908 (947)
--.+|.++..|++|..++.|+++ ..+++..+-+. +.. .--+++|.+++++.+|+
T Consensus 22 GivvR~iap~l~dK~~DPaVvvv---de~g~~vIplL-~GH----~GGan~lA~~iA~~lga 75 (84)
T PF11760_consen 22 GIVVRAIAPLLKDKDTDPAVVVV---DEDGRFVIPLL-GGH----RGGANELARQIAELLGA 75 (84)
T ss_dssp HHHHHHHHHH---TTT--EEEEE----TT--EEEEEE--TT----TT-HHHHHHHHHHHTT-
T ss_pred HHHHHHhChhhcccCCCCCEEEE---eCCCCEEEEec-cCC----cchHHHHHHHHHHHhCC
Confidence 34789999999999877633333 35665444332 221 12378999999999874
No 80
>PLN02530 histidine-tRNA ligase
Probab=24.18 E-value=1.5e+02 Score=35.68 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceecc------ccccccccccccC-------CC-------------CC
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIA------GMLQFKPIFLGKV-------PR-------------QV 103 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnA------Gm~qfk~~f~g~~-------~p-------------~~ 103 (947)
-..|.+.+.+-|+++|...|..-.+-+-| |+...+ -|..|.+- .|.. .| +.
T Consensus 87 ~~~i~~~~~~~~~~~Gy~~I~tP~lE~~e--l~~~~~g~~~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~ 163 (487)
T PLN02530 87 RNWLFDHFREVSRLFGFEEVDAPVLESEE--LYIRKAGEEITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSL 163 (487)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchHH--HhccccCcccccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCC
Confidence 46788999999999999998665443322 333222 25566431 1211 01 11
Q ss_pred -CCccccccccccCCccccCCC-CCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEE
Q 002252 104 -PRAATSQRCIRTNDVENVGRT-SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWI 168 (947)
Q Consensus 104 -~r~~~~QkCiR~nDldnVG~t-~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~v 168 (947)
-|++.+++|.|.. -..-|+. -.|..-+|++|.=|. +-.-|.|.+|+++|. .|||+.....+
T Consensus 164 P~r~~y~g~vfR~e-~~q~gr~REf~Q~giEiiG~~~~--~aDaEvi~l~~~~l~-~lgl~~~~~~i 226 (487)
T PLN02530 164 PLKWFAIGQCWRYE-RMTRGRRREHYQWNMDIIGVPGV--EAEAELLAAIVTFFK-RVGITSSDVGI 226 (487)
T ss_pred CeEEEEEcCEEcCc-CCCCCCccceEEcCeeEeCCCCc--chhHHHHHHHHHHHH-HcCCCCCceEE
Confidence 2667778888863 3444544 445677999997665 346899999999886 57887545433
No 81
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.57 E-value=3.7e+02 Score=25.86 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 786 DEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKA 819 (947)
Q Consensus 786 ~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a 819 (947)
..+|...+..|.+|+..|+-++..|++.+.....
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888899999999999999999888766543
No 82
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=23.36 E-value=39 Score=37.76 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=38.9
Q ss_pred cccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEe
Q 002252 157 VEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYY 218 (947)
Q Consensus 157 ~~l~l~~~~l-~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~ 218 (947)
+..|++++.+ |+=.+....-..+-|.+.+|+|++|+. |.+...|+||.|+ +++
T Consensus 230 ~~~g~~~~di~~~~~h~~~~~~~~~~~~~lgi~~~k~~--------~~~~~~Gn~~sas-~~~ 283 (318)
T TIGR00747 230 EANGLDPEDIDWFVPHQANLRIIEALAKRLELDMSQVV--------KTVHKYGNTSAAS-IPL 283 (318)
T ss_pred HHcCCCHHHCCEEEECCCCHHHHHHHHHHcCCCHHHee--------ehHhhhCCHHHHH-HHH
Confidence 4579988776 333556677888888899999999983 4456678999777 444
No 83
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.18 E-value=3.4e+02 Score=28.63 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002252 796 LLEDLRTARNEVANLRAKAA 815 (947)
Q Consensus 796 L~~e~k~l~k~l~~L~~~la 815 (947)
+.+++++|+++++.|+.++.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666554
No 84
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.13 E-value=3e+02 Score=29.55 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 786 DEEVTTRVEGLLEDLRTARNEVANLRAKAAV 816 (947)
Q Consensus 786 ~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~ 816 (947)
..++.+++++..+...+|++++++|++++..
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444555555555555443
No 85
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=23.04 E-value=1e+02 Score=25.85 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
-|++-++-..+.|.+.||.|++.++|.+.+
T Consensus 16 qK~~l~~~it~~l~~~lg~~~~~v~V~i~e 45 (63)
T TIGR00013 16 QKRQLIEGVTEAMAETLGANLESIVVIIDE 45 (63)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 366667777788888999999999998865
No 86
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=22.37 E-value=4.9e+02 Score=29.55 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhccceeecccCCeEEEEEEecCCCHHHHHHHHHHHHHh
Q 002252 788 EVTTRVEGLLEDLRTARNEVANLRAKAAV------YKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDT 860 (947)
Q Consensus 788 ~l~~~v~~L~~e~k~l~k~l~~L~~~la~------~~a~~l~~~~~~~~~~~~~~vv~~~~~~~d~~~L~~la~~l~~~ 860 (947)
.+.+.+..|.+++.+++.+++.++.++.. ..+..++... . .+.++.+...++.+.+....+.+.|...
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~g~--L---~g~~V~vV~~p~a~~~~~~~v~~~L~~A 109 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLVAGR--L---TGRSVAVVTLPGADDEDVDAVRELLEQA 109 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--c---CCCEEEEEEcCCCChHHHHHHHHHHHHC
Confidence 33344455555555555555555544422 2333333321 2 6778888888888877777777766553
No 87
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=22.28 E-value=1.9e+02 Score=33.06 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC-CCCc--cceeccccccccccccccCCC---------CCCCccccccccccCCc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP-EDPT--VLLTIAGMLQFKPIFLGKVPR---------QVPRAATSQRCIRTNDV 118 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~t--llftnAGm~qfk~~f~g~~~p---------~~~r~~~~QkCiR~nDl 118 (947)
++|-+.|-+||.++|...|..--+++ ..+. -.|..-.-..-++.+|-+.+. ...|+=...+|.|+-+.
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~ 91 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGI 91 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCC
Confidence 56788899999999999886655555 2221 012110001113344433221 35678888999998553
Q ss_pred cccCCCCCcccccccccC-cccCcccHHHHHHHHHHhhh
Q 002252 119 ENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFST 156 (947)
Q Consensus 119 dnVG~t~rHhTfFEMlGn-~SfgdYfK~eai~~awe~lt 156 (947)
+ .||++=|-||=- .+|.+| ++.++.+=+++.
T Consensus 92 ---~--~rHl~EFt~le~e~~~~~~--~~~m~~~e~li~ 123 (329)
T cd00775 92 ---D--LTHNPEFTMIEFYEAYADY--NDMMDLTEDLFS 123 (329)
T ss_pred ---C--CCCCCceEEEEEeeecCCH--HHHHHHHHHHHH
Confidence 3 699999999854 466665 445555544443
No 88
>PLN02850 aspartate-tRNA ligase
Probab=22.25 E-value=45 Score=40.73 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.5
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002252 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (947)
Q Consensus 262 ~~iDtGmGlERi~~vlqg~~s~ydtdlf~ 290 (947)
+|=-.|+|||||++++-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 56678999999999999999998887774
No 89
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=22.22 E-value=1.8e+02 Score=34.89 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC-C-CCcc-ceec-ccc-----ccc-cccccccCCC--------CCCCccccccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP-E-DPTV-LLTI-AGM-----LQF-KPIFLGKVPR--------QVPRAATSQRC 112 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp-~-d~tl-lftn-AGm-----~qf-k~~f~g~~~p--------~~~r~~~~QkC 112 (947)
++|-+.+-+||.++|...|..--+.+ . ++.. +|.- +-+ +-| ++++|-+.+- ...|+=..-+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 45667788999999999886554443 1 1111 1311 101 112 3344433221 35778888899
Q ss_pred cccCCccccCCCCCcccccccccC-cccCcccHHHHHHHHHHhh
Q 002252 113 IRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFS 155 (947)
Q Consensus 113 iR~nDldnVG~t~rHhTfFEMlGn-~SfgdYfK~eai~~awe~l 155 (947)
.|+-+. .|.||..=|.||-- .+|.|| ++.++.+=+++
T Consensus 217 FR~E~~----~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~li 254 (450)
T PRK03932 217 FRAENS----NTRRHLAEFWMIEPEMAFADL--EDNMDLAEEML 254 (450)
T ss_pred cccCCC----CCccccccccccceEEeccCH--HHHHHHHHHHH
Confidence 999443 36799988988876 377776 45554444433
No 90
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=22.21 E-value=33 Score=41.09 Aligned_cols=130 Identities=24% Similarity=0.314 Sum_probs=68.6
Q ss_pred CcccccceeeecCCCCcccc-----CccCCcCCCchhhcccCCC------CC---CCHHHHHHHH----------HHHHh
Q 002252 7 SILPCGHFLFKGATGVPSAR-----STSASVQPLTEEVEDKSQD------FP---SSGDSIRKRF----------LDFYA 62 (947)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~---~~~~eiR~~F----------l~fF~ 62 (947)
-|+-+.-.+|+..||..|-. --+-|..|+|++--.-... +. +.-.|.|+.| -.|+.
T Consensus 116 Diigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~ 195 (502)
T COG1190 116 DIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLD 195 (502)
T ss_pred CEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667778888888876543 3456778999875422111 10 1223444444 46888
Q ss_pred hCCCeeeCC--cCCcC-CCCccceeccccccccc-cccccCCC---------CCCCccccccccccCCccccCCCCCccc
Q 002252 63 SRGHKVLPS--ASLVP-EDPTVLLTIAGMLQFKP-IFLGKVPR---------QVPRAATSQRCIRTNDVENVGRTSRHHT 129 (947)
Q Consensus 63 ~~gH~~~~s--~slvp-~d~tllftnAGm~qfk~-~f~g~~~p---------~~~r~~~~QkCiR~nDldnVG~t~rHhT 129 (947)
++|...|+- -..|| ...---|++- +|.+.- .+|=.++- -..|+--.-++.| |=|.|.+|--
T Consensus 196 ~~gFlEVETP~lq~i~GGA~ArPF~Th-hNald~dlyLRIApELyLKRliVGG~erVfEIgr~FR-----NEGid~tHNP 269 (502)
T COG1190 196 DRGFLEVETPMLQPIPGGAAARPFITH-HNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFR-----NEGIDTTHNP 269 (502)
T ss_pred HCCCeEeccccccccCCCcccccceee-ecccCCceEEeeccHHHHHHHHhcCchhheeeccccc-----cCCCccccCc
Confidence 999887753 23334 2222222222 222221 22211110 1122323333333 5688999999
Q ss_pred ccccccC-cccCcc
Q 002252 130 FFEMLGN-FSFGDY 142 (947)
Q Consensus 130 fFEMlGn-~SfgdY 142 (947)
=|.||-. |...||
T Consensus 270 EFTmlE~Y~AYaDy 283 (502)
T COG1190 270 EFTMLEFYQAYADY 283 (502)
T ss_pred chhhHHHHHHHhHH
Confidence 9999977 455676
No 91
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=21.86 E-value=49 Score=37.65 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=0.0
Q ss_pred cchHHHHHHHHhCCCCCcccccc
Q 002252 267 GLGLERIARILQKVPNNYETDLI 289 (947)
Q Consensus 267 GmGlERi~~vlqg~~s~ydtdlf 289 (947)
|+|+|||++++-|.++.=|+-+|
T Consensus 308 glG~eRLvm~l~g~~~Irdv~~F 330 (335)
T PF00152_consen 308 GLGLERLVMLLLGLKNIRDVIPF 330 (335)
T ss_dssp EEEHHHHHHHHHT-SSGGGGSSS
T ss_pred eehHHHHHHHHcCCCcHHheecC
No 92
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=21.82 E-value=46 Score=39.78 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.8
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002252 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (947)
Q Consensus 262 ~~iDtGmGlERi~~vlqg~~s~ydtdlf~ 290 (947)
++=--|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 66677999999999999999988876664
No 93
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=21.80 E-value=2.1e+02 Score=32.01 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=25.3
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002252 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (947)
Q Consensus 262 ~~iDtGmGlERi~~vlqg~~s~ydtdlf~ 290 (947)
+|=-.|||+|||++++-|.+|.=|+-+|.
T Consensus 248 P~~G~giGidRL~m~~~g~~~Irdv~~FP 276 (280)
T cd00777 248 PHGGIALGLDRLVMLLTGSESIRDVIAFP 276 (280)
T ss_pred CCCeEeEhHHHHHHHHcCCCchheEeecC
Confidence 77788999999999999999988876663
No 94
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=21.66 E-value=5.8e+02 Score=31.53 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=54.3
Q ss_pred ceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhcc
Q 002252 314 NLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTH 386 (947)
Q Consensus 314 ~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~ 386 (947)
++=.|||-+-+++=+.+=|..|+...-=|=|||---=.+|.....+++-+ |.+|+...++.+..
T Consensus 445 ~ilsiADKlDtl~g~F~ig~~PtGskDPfaLRRaa~GIirIi~e~~~~l~---------L~~li~~a~~~~~~ 508 (548)
T PF02092_consen 445 AILSIADKLDTLVGFFGIGEIPTGSKDPFALRRAALGIIRIIIEKKLDLD---------LKELIEKALELYPK 508 (548)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHHhhh
Confidence 55678999999999999999999999999999887777777777778777 78888888887654
No 95
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=21.28 E-value=8.2e+02 Score=27.96 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=81.0
Q ss_pred CccCcccccchHHHHHHHHhCCCCCccc------cccHHHHHHHHHHhCCCccCCccccccceE---EechhhhHHHHhh
Q 002252 259 LKQKNIDTGLGLERIARILQKVPNNYET------DLIFPIIKKASELANVSYAQSNDRTNLNLK---IIGDHLRAIVYLL 329 (947)
Q Consensus 259 L~~~~iDtGmGlERi~~vlqg~~s~ydt------dlf~p~i~~i~~~~~~~y~~~~~~~~~~~r---~iaDH~R~~~~~i 329 (947)
.+-..+-++-+++|+..+.......+.. .-|......+.+....--+. . ....|| ..-..+|+...-+
T Consensus 34 ~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~~p~-~--~a~~~~~d~~~f~~ir~~i~k~ 110 (335)
T PF11867_consen 34 FDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALCLPD-P--EAEEYRDDIAFFQAIRAAIRKL 110 (335)
T ss_pred CChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566777899998888777766642 23444444444442211111 1 000111 1234566666655
Q ss_pred cCCCc-cCCCCCchHHHHHHHHHHHHHH------HhCCCCCCCCCccccchHHHHHHHHHHhcc-CChhhHHhHHHHHHH
Q 002252 330 SDGVF-PSNIGRGYVVRRLIRRAVRTGR------LLGIKGDGRGNLEGAFLPSIAEKAIELSTH-IDSDVKAREQRILEE 401 (947)
Q Consensus 330 ~DG~~-Psn~grgYvlRrilRRa~r~~~------~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~-~ypeL~~~~~~I~~i 401 (947)
..+-- |+....+.-+|.||-.++..-. ..|.+.| =+.-|-+...+.+.. -+|.++. +.|+..
T Consensus 111 ~~~~~~~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~--------disild~eFl~~v~~~~~k~~~~--e~L~~~ 180 (335)
T PF11867_consen 111 YSDDDGPDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKP--------DISILDDEFLEEVKKMKSKNLKA--ELLEKL 180 (335)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCC--------ChhhcCHHHHHHHHhccCchHHH--HHHHHH
Confidence 55544 8888899999999999997632 1355555 234444444444433 2777764 668888
Q ss_pred HHHHHHHHHHH
Q 002252 402 LKREELRFVQT 412 (947)
Q Consensus 402 i~~Ee~~F~~t 412 (947)
|+.+.....+.
T Consensus 181 l~~~I~~~~~~ 191 (335)
T PF11867_consen 181 LRDEIKVRMKE 191 (335)
T ss_pred HHHHHHHHHhc
Confidence 88887766543
No 96
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.08 E-value=2.3e+02 Score=27.38 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 762 EAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAK 813 (947)
Q Consensus 762 ~~A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~ 813 (947)
.-+++|+-...+.+... ...+.++++.+.++.+.++++++++.++
T Consensus 65 Ql~ieYLl~~q~~L~~~-------~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 65 QLSIEYLLHCQEYLSSQ-------LEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665555544333 3344444444444444444444444443
No 97
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.71 E-value=3.4e+02 Score=24.72 Aligned_cols=39 Identities=33% Similarity=0.423 Sum_probs=29.4
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 775 MKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKA 814 (947)
Q Consensus 775 l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~l 814 (947)
+..+...++.+.+++...+. |.++...+++++..|++++
T Consensus 50 i~~L~~d~g~~l~~i~~~l~-l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 50 IQRLTQELGVNLAGVKRILE-LEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 44555668888888877664 8888888888888887764
No 98
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=20.58 E-value=52 Score=40.36 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.2
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002252 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (947)
Q Consensus 262 ~~iDtGmGlERi~~vlqg~~s~ydtdlf~ 290 (947)
+|=-.|+|||||++++-|.++.=++-+|.
T Consensus 514 PhgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 514 PHGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 56678999999999999999998887764
No 99
>PRK06462 asparagine synthetase A; Reviewed
Probab=20.43 E-value=54 Score=37.59 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccce-eccccccc------cccccccCCC--------CCCCccccccccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLL-TIAGMLQF------KPIFLGKVPR--------QVPRAATSQRCIR 114 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllf-tnAGm~qf------k~~f~g~~~p--------~~~r~~~~QkCiR 114 (947)
++|-+.+-+||.++|...|..==+.+ .++-+-- .+-|...| ++++|-+.+- ...|+=...+|.|
T Consensus 34 s~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR 113 (335)
T PRK06462 34 SSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFR 113 (335)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeeccCHHHHHHHHHhhcCcEEEEecccc
Confidence 56777888999999988774332323 2221100 00001111 2233322110 2467888889999
Q ss_pred cCCccccCCCCCcccccccccCc-ccCcccHHHHHHHHHHhh
Q 002252 115 TNDVENVGRTSRHHTFFEMLGNF-SFGDYFKKEAIQWAWEFS 155 (947)
Q Consensus 115 ~nDldnVG~t~rHhTfFEMlGn~-SfgdYfK~eai~~awe~l 155 (947)
+-+.+.- +.||..=|-||--. .|.|| ++.++.+=+++
T Consensus 114 ~E~~~~~--~~rHl~EFtmlE~e~~~~d~--~dlm~~~e~lv 151 (335)
T PRK06462 114 LEPVDKD--TGRHLYEFTQLDIEIEGADL--DEVMDLIEDLI 151 (335)
T ss_pred CCCCCCC--CCCCCCchheeeehhhcCCH--HHHHHHHHHHH
Confidence 9543321 27999999998665 55465 34444444433
No 100
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=20.38 E-value=52 Score=39.32 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.2
Q ss_pred CcccccchHHHHHHHHhCCCCCccccccH
Q 002252 262 KNIDTGLGLERIARILQKVPNNYETDLIF 290 (947)
Q Consensus 262 ~~iDtGmGlERi~~vlqg~~s~ydtdlf~ 290 (947)
++=-.|||+|||++.+-|.++.=|+-+|.
T Consensus 414 P~gG~GiGidRL~m~l~g~~nIrdv~~FP 442 (450)
T PRK03932 414 PHSGFGLGFERLVAYITGLDNIRDVIPFP 442 (450)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 77788999999999999999988876654
No 101
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.23 E-value=4.4e+02 Score=25.55 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 786 DEEVTTRVEGLLEDLRTARNEVANLRAKAAVY 817 (947)
Q Consensus 786 ~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~ 817 (947)
..+|...+..|.+|+..|+-++..|++.+...
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788888899999999999999998887754
No 102
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=20.18 E-value=52 Score=37.63 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=23.8
Q ss_pred CcccccchHHHHHHHHhCCCCCcccccc
Q 002252 262 KNIDTGLGLERIARILQKVPNNYETDLI 289 (947)
Q Consensus 262 ~~iDtGmGlERi~~vlqg~~s~ydtdlf 289 (947)
+|--.|+|||||++++-|.++.=|+-+|
T Consensus 297 p~~G~glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 297 PTGGLGIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred CCCcEEecHHHHHHHHcCCCcHHhcccC
Confidence 5677899999999999999998777555
No 103
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=20.18 E-value=1.1e+02 Score=25.88 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
.|+..++-.-+.|.+.||+|++.++|.+-+
T Consensus 16 qk~~l~~~it~~l~~~lg~p~~~v~V~i~e 45 (64)
T PRK01964 16 KIKNLIREVTEAISATLDVPKERVRVIVNE 45 (64)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 477777777888889999999999997754
No 104
>PLN02532 asparagine-tRNA synthetase
Probab=20.16 E-value=54 Score=40.75 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=34.8
Q ss_pred CCCccccccccccCCccccCCCCCcccccccccC-cccCcc-----cHHHHHHHHHHhhh
Q 002252 103 VPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGN-FSFGDY-----FKKEAIQWAWEFST 156 (947)
Q Consensus 103 ~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn-~SfgdY-----fK~eai~~awe~lt 156 (947)
+.|+=...+|.|+-..+ |.||++=|-||-- ++|.|| +-++-|.+....+.
T Consensus 389 l~rVYeIgP~FRAE~s~----T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~ 444 (633)
T PLN02532 389 LGNVYTFGPRFRADRID----SARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVL 444 (633)
T ss_pred cCceEEEccceecCCCC----CCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999993222 7899999999854 477775 33444555555443
Done!