Query 002252
Match_columns 947
No_of_seqs 341 out of 2065
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 18:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 9E-203 3E-207 1792.8 53.9 661 6-762 18-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 5E-189 2E-193 1674.4 49.3 647 6-762 21-738 (739)
3 1yfs_A Alanyl-tRNA synthetase; 100.0 7E-173 2E-177 1442.6 26.9 451 48-519 3-459 (465)
4 3hy0_A Alanyl-tRNA synthetase; 100.0 5E-170 2E-174 1412.2 31.9 421 48-489 2-438 (441)
5 3kew_A DHHA1 domain protein; s 100.0 7.4E-56 2.5E-60 472.5 19.4 228 511-767 4-234 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 3.9E-51 1.3E-55 429.7 16.4 208 509-760 4-215 (216)
7 1v4p_A Alanyl-tRNA synthetase; 99.9 5.3E-26 1.8E-30 227.1 16.2 143 620-762 4-152 (157)
8 2zvf_A Alanyl-tRNA synthetase; 99.9 4.5E-24 1.6E-28 216.0 20.6 170 760-942 1-170 (171)
9 1tke_A Threonyl-tRNA synthetas 99.9 2.5E-24 8.4E-29 227.4 17.7 164 589-760 41-222 (224)
10 1nyr_A Threonyl-tRNA synthetas 99.9 1.3E-21 4.3E-26 236.1 14.7 169 589-763 43-224 (645)
11 1qf6_A THRRS, threonyl-tRNA sy 99.8 1.3E-20 4.5E-25 226.8 17.4 165 589-760 41-222 (642)
12 3g98_A Alanyl-tRNA synthetase; 99.7 1.8E-16 6E-21 149.6 13.3 104 833-939 7-110 (111)
13 1nnh_A Asparaginyl-tRNA synthe 91.6 0.28 9.7E-06 53.3 7.4 103 51-159 19-141 (294)
14 3rf1_A Glycyl-tRNA synthetase 91.2 0.66 2.3E-05 49.2 9.1 177 43-286 20-201 (311)
15 1j5w_A Glycyl-tRNA synthetase 87.4 1.7 5.8E-05 45.9 8.8 173 47-286 12-189 (298)
16 2zxr_A Single-stranded DNA spe 81.9 8.9 0.0003 46.2 13.0 90 839-942 333-422 (666)
17 3dsq_A Pyrrolysyl-tRNA synthet 62.8 29 0.00099 37.3 10.0 107 50-162 73-205 (288)
18 4dh4_A MIF; trimer, isomerase; 59.1 5 0.00017 36.9 2.8 30 143-172 72-101 (114)
19 1kd8_B GABH BLL, GCN4 acid bas 53.5 23 0.0008 26.1 4.8 30 787-816 4-33 (36)
20 3fwu_A Macrophage migration in 53.3 7.8 0.00027 36.9 3.2 33 140-172 90-122 (133)
21 3b64_A Macrophage migration in 53.2 8.1 0.00028 35.2 3.2 31 142-172 71-101 (112)
22 3djh_A Macrophage migration in 51.6 7.9 0.00027 35.6 2.8 30 143-172 71-100 (114)
23 3kan_A D-dopachrome tautomeras 50.0 8.5 0.00029 35.7 2.8 29 144-172 73-101 (117)
24 1kd8_A GABH AIV, GCN4 acid bas 49.3 30 0.001 25.5 4.8 31 787-817 4-34 (36)
25 2oxj_A Hybrid alpha/beta pepti 48.9 30 0.001 25.2 4.7 27 787-813 4-30 (34)
26 1hfo_A Migration inhibitory fa 48.8 9.9 0.00034 34.6 3.0 29 144-172 72-100 (113)
27 2xcz_A Possible ATLS1-like lig 48.7 9.9 0.00034 34.7 3.0 29 144-172 73-101 (115)
28 2wkb_A Macrophage migration in 48.6 10 0.00036 35.3 3.2 31 142-172 71-101 (125)
29 3fwt_A Macrophage migration in 47.7 9.6 0.00033 36.3 2.8 30 143-172 93-122 (133)
30 1uiz_A MIF, macrophage migrati 47.0 11 0.00037 34.4 3.0 29 144-172 73-101 (115)
31 2os5_A Acemif; macrophage migr 46.4 11 0.00038 34.7 3.0 29 144-172 73-101 (119)
32 3t5s_A Gilaa.00834.A, macropha 46.1 10 0.00034 36.2 2.6 29 144-172 94-122 (135)
33 3m48_A General control protein 45.2 30 0.001 25.1 4.2 26 787-812 3-28 (33)
34 1eov_A ASPRS, aspartyl-tRNA sy 45.0 25 0.00085 40.7 6.2 95 52-156 183-293 (487)
35 3c3g_A Alpha/beta peptide with 40.1 50 0.0017 23.9 4.7 27 787-813 3-29 (33)
36 3abf_A 4-oxalocrotonate tautom 39.6 17 0.00057 29.2 2.7 29 144-172 17-45 (64)
37 1otf_A 4-oxalocrotonate tautom 39.1 15 0.00051 29.3 2.3 30 143-172 15-44 (62)
38 2l5g_B Putative uncharacterize 39.1 76 0.0026 24.4 5.8 35 784-818 2-36 (42)
39 3c3f_A Alpha/beta peptide with 38.9 54 0.0018 23.9 4.7 27 787-813 4-30 (34)
40 1gyx_A YDCE, B1461, hypothetic 38.8 34 0.0012 28.8 4.6 49 143-192 16-66 (76)
41 2hy6_A General control protein 38.5 55 0.0019 23.9 4.7 27 787-813 4-30 (34)
42 2opa_A Probable tautomerase YW 38.3 16 0.00054 29.1 2.3 30 143-172 15-44 (61)
43 1evl_A Threonyl-tRNA synthetas 38.1 1.6E+02 0.0054 32.7 11.3 113 50-169 33-180 (401)
44 1uo4_A General control protein 37.6 49 0.0017 24.2 4.4 26 787-812 4-29 (34)
45 2dq3_A Seryl-tRNA synthetase; 37.3 50 0.0017 37.5 7.0 169 51-277 176-396 (425)
46 1eh2_A EPS15; calcium binding, 37.2 95 0.0032 27.9 7.6 45 438-482 29-77 (106)
47 3i7f_A Aspartyl-tRNA synthetas 33.8 43 0.0015 39.4 5.8 83 51-142 248-347 (548)
48 1c07_A Protein (epidermal grow 32.4 1.2E+02 0.004 26.2 7.3 46 438-483 25-74 (95)
49 2wq1_A General control protein 31.9 82 0.0028 22.9 4.7 26 787-812 3-28 (33)
50 2bni_A General control protein 31.6 70 0.0024 23.4 4.4 26 787-812 4-29 (34)
51 3m20_A 4-oxalocrotonate tautom 31.4 40 0.0014 27.2 3.7 29 144-172 15-43 (62)
52 3fia_A Intersectin-1; EH 1 dom 30.7 98 0.0033 29.0 6.7 45 438-482 47-95 (121)
53 3qtc_A Pyrrolysyl-tRNA synthet 30.6 60 0.0021 34.6 6.0 170 50-283 79-273 (290)
54 3dma_A Exopolyphosphatase-rela 29.9 1E+02 0.0035 33.8 7.8 79 850-941 258-337 (343)
55 1qjt_A EH1, epidermal growth f 29.5 1E+02 0.0034 27.1 6.4 45 438-482 26-74 (99)
56 2r2v_A GCN4 leucine zipper; co 29.3 95 0.0032 22.7 4.7 27 787-813 4-30 (34)
57 2x4k_A 4-oxalocrotonate tautom 28.3 21 0.00072 28.2 1.5 29 144-172 19-47 (63)
58 3il3_A 3-oxoacyl-[acyl-carrier 27.9 24 0.00083 38.3 2.3 76 129-214 209-285 (323)
59 1fi6_A EH domain protein REPS1 27.3 1.3E+02 0.0044 25.8 6.5 45 438-482 24-72 (92)
60 1mww_A Hypothetical protein HI 27.1 33 0.0011 31.8 2.8 30 143-172 74-103 (128)
61 2yy0_A C-MYC-binding protein; 27.0 86 0.0029 25.2 4.8 29 791-819 19-47 (53)
62 4dzn_A Coiled-coil peptide CC- 26.7 1.1E+02 0.0038 21.4 4.5 25 793-817 4-28 (33)
63 2aal_A Malonate semialdehyde d 26.4 37 0.0013 31.7 3.0 29 144-172 81-109 (131)
64 3mb2_A 4-oxalocrotonate tautom 25.8 39 0.0013 28.1 2.8 29 144-172 17-45 (72)
65 1apy_A Aspartylglucosaminidase 25.0 92 0.0032 30.7 5.6 51 145-214 107-160 (162)
66 2kpt_A Putative secreted prote 24.8 2.1E+02 0.0071 27.5 8.1 68 834-906 44-112 (148)
67 3h78_A PQS biosynthetic enzyme 24.5 22 0.00074 39.3 1.1 75 130-214 240-315 (359)
68 3a5y_A GENX, putative lysyl-tR 24.3 27 0.00093 38.6 1.9 23 267-289 318-340 (345)
69 2wuj_A Septum site-determining 24.3 52 0.0018 26.7 3.1 31 785-815 21-51 (57)
70 1iq3_A Ralbp1-interacting prot 24.0 1.1E+02 0.0036 27.7 5.5 45 438-482 37-85 (110)
71 3m21_A Probable tautomerase HP 23.6 42 0.0014 27.4 2.5 29 144-172 19-47 (67)
72 4dfe_A 3-oxoacyl-[acyl-carrier 23.5 24 0.00084 38.2 1.3 76 129-214 219-295 (333)
73 2i7u_A Four-alpha-helix bundle 22.6 51 0.0017 26.1 2.5 17 897-913 17-33 (62)
74 3nem_A Aspartyl-tRNA synthetas 22.0 32 0.0011 39.3 1.9 97 52-155 142-258 (438)
75 1wyd_A Hypothetical aspartyl-t 22.0 32 0.0011 39.1 1.9 96 51-157 138-248 (429)
76 3bju_A Lysyl-tRNA synthetase; 21.1 33 0.0011 40.0 1.8 99 52-156 181-298 (521)
77 1n9w_A Aspartyl-tRNA synthetas 21.1 34 0.0012 38.8 1.9 97 51-158 129-241 (422)
78 3m4p_A Ehasnrs, asparaginyl-tR 21.0 34 0.0012 39.2 1.9 84 52-142 161-257 (456)
79 3i7f_A Aspartyl-tRNA synthetas 20.6 36 0.0012 40.1 1.9 28 262-289 512-539 (548)
80 3uh0_A Threonyl-tRNA synthetas 20.4 2.2E+02 0.0075 32.5 8.5 70 105-178 151-240 (460)
81 4ex5_A Lysine--tRNA ligase; st 20.4 36 0.0012 39.9 1.9 99 52-156 209-326 (529)
82 3ry0_A Putative tautomerase; o 20.3 51 0.0017 26.7 2.3 30 143-172 15-44 (65)
83 3iv1_A Tumor susceptibility ge 20.2 2.9E+02 0.0099 24.0 7.0 43 774-816 29-71 (78)
84 2wt7_A Proto-oncogene protein 20.1 1.6E+02 0.0056 24.1 5.4 32 786-817 25-56 (63)
85 1e1o_A Lysyl-tRNA synthetase, 20.1 36 0.0012 39.6 1.8 96 52-155 188-297 (504)
86 2xgt_A Asparaginyl-tRNA synthe 20.1 37 0.0013 38.7 1.9 83 52-142 137-233 (435)
87 3a74_A Lysyl-tRNA synthetase; 20.0 36 0.0012 39.4 1.8 98 52-157 179-290 (493)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=8.7e-203 Score=1792.79 Aligned_cols=661 Identities=29% Similarity=0.462 Sum_probs=608.0
Q ss_pred CCcccccceeeecCCCCccccCccCCc----CCCchhhcccCCCCCCCHHHHHHHHHHHHhhCC---CeeeCCcCCcC-C
Q 002252 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRG---HKVLPSASLVP-E 77 (947)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~g---H~~~~s~slvp-~ 77 (947)
+.|-.||++||+.+..|+.|.|..-+. +.|+.+ ++||++|||++||+||++|| |++|||||||| +
T Consensus 18 ~~c~~c~~~fwt~~~~r~~cgd~~c~~y~fi~~~~~~-------~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~ 90 (752)
T 2zze_A 18 XXCXVCGXPFWTLDPDRETCGDPPCDEYQFIGKPGIP-------RXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRW 90 (752)
T ss_dssp EECTTTCCEEEESCTTCCSCSSTTTSCCCCTTSCSSS-------SCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTT
T ss_pred eeecccCcceeecCCCcCCCCCCCCCCccccCCCccc-------ccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCC
Confidence 469999999999999999999977544 434333 34999999999999999999 99999999999 8
Q ss_pred CCccceecccccccccccc-ccCCCCCCCccccccccccCCccccCCCCCcccccccccCcccC-----cccHHHHHHHH
Q 002252 78 DPTVLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWA 151 (947)
Q Consensus 78 d~tllftnAGm~qfk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfg-----dYfK~eai~~a 151 (947)
|||||||||||+||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||.||
T Consensus 91 dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~a 170 (752)
T 2zze_A 91 RDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELA 170 (752)
T ss_dssp CSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHH
T ss_pred CCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceecCcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCC
Q 002252 152 WEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDL 231 (947)
Q Consensus 152 we~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~ 231 (947)
|||||++||||++||+. +||||+|| ||||||||||||
T Consensus 171 we~lT~~~gl~~~ri~~-----------------------------~dNfW~~G--GpcGPcsEI~~d------------ 207 (752)
T 2zze_A 171 FEFFTKELXMXPEDITF-----------------------------KENPWAGG--GNAGPAFEVLYR------------ 207 (752)
T ss_dssp HHHHHHTSCCCGGGEEE-----------------------------EECCEEET--TEEECEEEEEET------------
T ss_pred HHHHhhhhhcchhheee-----------------------------ccCcccCC--CCCCCceeEEEC------------
Confidence 99999999999999741 69999999 999999999996
Q ss_pred CCCCceEEEeeeecccc-------------cccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHH
Q 002252 232 GDDTRFIEFYNLVFMQY-------------NKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298 (947)
Q Consensus 232 ~~~~r~lEiwNlVFmq~-------------~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ydtdlf~p~i~~i~~ 298 (947)
+||||||||||| || ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++
T Consensus 208 -----glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~ 280 (752)
T 2zze_A 208 -----GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXX 280 (752)
T ss_dssp -----TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHH
T ss_pred -----CEeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHH
Confidence 299999999999 88 69999999999999999999999999999999999 99999999999
Q ss_pred HhCCCccC--------------Cccc-c--------------------------ccceEEechhhhHHHHhhcCCCccCC
Q 002252 299 LANVSYAQ--------------SNDR-T--------------------------NLNLKIIGDHLRAIVYLLSDGVFPSN 337 (947)
Q Consensus 299 ~~~~~y~~--------------~~~~-~--------------------------~~~~r~iaDH~R~~~~~i~DG~~Psn 337 (947)
++|++|+. +.+. . +.++||||||+||++|||+||++|||
T Consensus 281 ~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN 360 (752)
T 2zze_A 281 MAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSN 360 (752)
T ss_dssp HHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred hcCCCccchhhhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCc
Confidence 99999853 2011 1 46899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 338 IGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGE 417 (947)
Q Consensus 338 ~grgYvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~ 417 (947)
+|||||||||||||+||+++||++.| |++||+.+++.|++.||||.++++.|++||+.||++|.+||++|+
T Consensus 361 ~GrGYvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~ 431 (752)
T 2zze_A 361 VXAGYLARLLIRKSIRHLRELGLEVP---------LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGS 431 (752)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCC---------HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeChh-hHHHHHHHHHHHHHHhhcccccc
Q 002252 418 KLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLS 496 (947)
Q Consensus 418 ~~l~~~~~~~~~~~~~~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~ 496 (947)
++|+++++ +++++|+ ++|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++.. . .
T Consensus 432 ~~l~~~~~----~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~-~--~ 503 (752)
T 2zze_A 432 DLVRREIA----KLKKKGI-KEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG-E--E 503 (752)
T ss_dssp HHHHHHHH----HHHHHSC-SCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----------
T ss_pred HHHHHHHH----HhhhcCC-CccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc-c--c
Confidence 99999998 5544453 579999999999999999999999999999999999 899999999999886521 1 1
Q ss_pred cCchhHhhhhCCCCccccccc---ccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCc
Q 002252 497 VDDSADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTN 573 (947)
Q Consensus 497 ~~~~~~l~~~~~~t~f~gY~~---~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~ 573 (947)
..+...+. ..++|+|+||++ ++++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 504 ~~~~~~~~-~~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~-- 567 (752)
T 2zze_A 504 LVDFELLK-DLPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGR-- 567 (752)
T ss_dssp CCCSSSSS-SSCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTE--
T ss_pred chhhHHhc-cCCCceeecccCCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCE--
Confidence 10111222 357899999998 789999999974 36999999999999999999999987554
Q ss_pred ccceeEEEEEEEEecCCEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCC
Q 002252 574 QQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFD 653 (947)
Q Consensus 574 ~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d 653 (947)
.++|.||++. +|.++|++.. .+.+.+|++|.++|||+||+.+|++|||+|||++||+++||.|++|.|+++.++
T Consensus 568 ----~~~V~dv~k~-~g~ivH~~~~-~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d 641 (752)
T 2zze_A 568 ----EVXVTNVQXV-GXVIIHXVED-PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTD 641 (752)
T ss_dssp ----EEEEEEEEEE-TTEEEEEESC-GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSS
T ss_pred ----EEEEEeeeec-CcEEEEeccc-cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCC
Confidence 7999999999 8999999975 577899999999999999999999999999999999999999999999999999
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhcccccc--CCCCCCcEEEEEECCccccccCccc
Q 002252 654 RLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTH 731 (947)
Q Consensus 654 ~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTH 731 (947)
++||||++++++|+++|.+||++||++|++|+||++.+++++||++.+..++| +++|++.||||+||++|.++|||||
T Consensus 642 ~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTH 721 (752)
T 2zze_A 642 WARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTH 721 (752)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCc
Confidence 99999999999999999999999999999999999999999999999888888 7889999999999999999999999
Q ss_pred cccccccceEEEEeeeccccceEEEEEEecH
Q 002252 732 VNNTAEIRAFKIISEQGIASGIRRIEAVAGE 762 (947)
Q Consensus 732 V~nTgeIg~~kIl~~~~~~~Gv~RI~~v~G~ 762 (947)
|+|||+||.|||++++++++|+|||+|+||.
T Consensus 722 V~nTgeIG~fKIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 722 LPSTGLVGPIXILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp CSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred cCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence 9999999999999999999999999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.4e-189 Score=1674.38 Aligned_cols=647 Identities=31% Similarity=0.526 Sum_probs=597.1
Q ss_pred CCcccccceeeecCCCCccccCccCCc----CCCchhhcccCCCCCCCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCc
Q 002252 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPT 80 (947)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~t 80 (947)
+.|-.||.+||+.+..|+.|.+..-+. +.|+.+ ++||++|||++|++||+++||+++||||||| +|||
T Consensus 21 ~~c~~cg~~fwt~~~~r~~cgd~~c~~y~fi~~~~~~-------~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dpt 93 (739)
T 2ztg_A 21 KRCPKCGKHFWTADPEREICGDPPCESYSFIGNPVFK-------KPFELDEMREYYLNFFERRGHGRIERYPVVARWRTD 93 (739)
T ss_dssp ECCCSSSSCEEECCSSCCCCCSSSSCCCCCTTSCSSS-------SCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSS
T ss_pred eECCCCCCceecCCCCcCCCCCCCCCCccccCCCCcC-------CCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCC
Confidence 579999999999999999999877644 333332 3499999999999999999999999999999 8999
Q ss_pred cceecccccccccccc-ccCCCCCCCccccccccccCCccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHh
Q 002252 81 VLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEF 154 (947)
Q Consensus 81 llftnAGm~qfk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfg-----dYfK~eai~~awe~ 154 (947)
||||||||+||||||+ |..+||++|+|++|||||+|||||||+|+||||||||||||||| ||||+|||+|||||
T Consensus 94 llft~agm~~fkp~~~~g~~~p~~~~~~~~Q~ciR~~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~ 173 (739)
T 2ztg_A 94 IYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTEL 173 (739)
T ss_dssp BSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECGGGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHH
T ss_pred ceeeecChhhCcHhHhCCCCCCCCCCcccccccccCcccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHH
Confidence 9999999999999997 99999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCC
Q 002252 155 STVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDD 234 (947)
Q Consensus 155 lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~ 234 (947)
| ++|||||+||. + +||||+|| ||||||||||||
T Consensus 174 l-~~~g~~~~~i~--------------------------~---~dnfW~~g--Gp~Gpc~Ei~~d--------------- 206 (739)
T 2ztg_A 174 L-NELGVKKEDIV--------------------------Y---KEEPWAGG--GNAGPCLEAIVG--------------- 206 (739)
T ss_dssp H-HHHTCCGGGCE--------------------------E---EEEEEEET--TEEEEEEEEEET---------------
T ss_pred H-HHhCCCHHHee--------------------------e---ccCcccCC--CCCCCeeEEEEC---------------
Confidence 9 78999999752 1 79999999 999999999996
Q ss_pred CceEEEeeeecccccccCCCccc-------cCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCcc--
Q 002252 235 TRFIEFYNLVFMQYNKKDDGSLE-------PLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYA-- 305 (947)
Q Consensus 235 ~r~lEiwNlVFmq~~~~~~g~~~-------~L~~~~iDtGmGlERi~~vlqg~~s~ydtdlf~p~i~~i~~~~~~~y~-- 305 (947)
+|||||+|||||||+++|++. |||+|+||||||||||||+|||++||||| +|.|||++|++++|++|+
T Consensus 207 --g~EiwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~ 283 (739)
T 2ztg_A 207 --GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNRE 283 (739)
T ss_dssp --TEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTT
T ss_pred --CEEeeeeeeEEeeecCCCceeecCccccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCcccc
Confidence 299999999999999999997 99999999999999999999999999999 999999999999999984
Q ss_pred CC-----------------ccc-c-------c-------------------cceEEechhhhHHHHhhcCCCccCCCCCc
Q 002252 306 QS-----------------NDR-T-------N-------------------LNLKIIGDHLRAIVYLLSDGVFPSNIGRG 341 (947)
Q Consensus 306 ~~-----------------~~~-~-------~-------------------~~~r~iaDH~R~~~~~i~DG~~Psn~grg 341 (947)
.+ .+. . + .++||||||+||++|||+||++|||+|||
T Consensus 284 ~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grG 363 (739)
T 2ztg_A 284 DERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAG 363 (739)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHH
T ss_pred ccchhhhhhhhhhcccccCcccchhHHHHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcc
Confidence 11 001 0 1 58999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 342 YVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLD 421 (947)
Q Consensus 342 YvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~ 421 (947)
||||||||||+||+++||++.| |++||+.|++.|++ ||.++++.|++||+.||++|.+||++|+++|+
T Consensus 364 YvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~ 431 (739)
T 2ztg_A 364 YLARLMIRRSLRLAEELELGLD---------LYDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVE 431 (739)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSC---------HHHHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcc---------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 89999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeChh-hHHHHHHHHHHHHHHhhcccccccCch
Q 002252 422 QMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDS 500 (947)
Q Consensus 422 ~~~~~~~~~~~~~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~ 500 (947)
++++ +++ .|||++||+||||||||+|||++||+|+|++||++ +|+++|++||++||++.. . +.
T Consensus 432 ~~~~----~~~------~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~a~~~~~-----~-~~ 495 (739)
T 2ztg_A 432 RLVE----RKK------KLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKVQE-----K-KI 495 (739)
T ss_dssp HHHH----HHS------BCCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTTSBCCCCCC-----C-CC
T ss_pred HHHH----Hhc------CCCHHHHHHHHHhcCCCHHHHHHHHHHcCCeeCCcccHHHHHHHHHHHHhhccc-----c-ch
Confidence 9998 431 29999999999999999999999999999999998 899999999998876421 1 11
Q ss_pred hHhhhhCCCCccccccc---ccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccce
Q 002252 501 ADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTA 577 (947)
Q Consensus 501 ~~l~~~~~~t~f~gY~~---~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~ 577 (947)
.+....++|+|+||++ ++++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 496 -~~~~~~~~T~~l~Y~~~y~~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~------ 555 (739)
T 2ztg_A 496 -TLQNEYPATEKLYYDDPTLLEFEAEVIGVEG-------------DFVILNRSAFYPESGGQDNDVGYLIANGG------ 555 (739)
T ss_dssp -CCSSCCCCCEECTTTCTTCCEEEEEEEEEET-------------TEEEESEECCCCSBTTBCCCCEEEEETTE------
T ss_pred -hhhccCCCceeecccCCcccEEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEECCE------
Confidence 2222257899999999 789999999974 26999999999999999999999987554
Q ss_pred eEEEEEEEEecCCEEEEEEEeecccc-CCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEE
Q 002252 578 VVEVKDVKKSLGSVFVHKGTIREGVL-EVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLR 656 (947)
Q Consensus 578 ~~~V~dv~k~~~g~ivH~~~~~~g~l-~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r 656 (947)
.++|.||++. +|.++|++. +.+ .+|++|.++|||+||+.+|++|||+|||++||+++||.|++|.||+++++++|
T Consensus 556 ~~~V~dv~k~-~g~ivH~~~---~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r 631 (739)
T 2ztg_A 556 KFEVVDVLEA-DGVVLHVVK---GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKAR 631 (739)
T ss_dssp EEEECEEEEE-TTEEEEECC---SSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCE
T ss_pred EEEEEEEEEE-CCEEEEEEc---ccCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEE
Confidence 7999999999 799999986 345 68999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhcccccc--CCCCCCcEEEEEECCccccccCcccccc
Q 002252 657 FDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTHVNN 734 (947)
Q Consensus 657 ~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTHV~n 734 (947)
|||++++++|++++.+||++||++|++|+||++.+++.+||.+++.++++ +++|++.||||+||+ +.++||||||+|
T Consensus 632 ~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IGd-~~elCGGTHV~n 710 (739)
T 2ztg_A 632 LDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD-DVQACGGTHCRS 710 (739)
T ss_dssp EEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEETT-EEEECCSCCCSB
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEECC-eeeCcCCcCccc
Confidence 99999889999999999999999999999999999999999998888887 577889999999999 999999999999
Q ss_pred ccccceEEEEeeeccccceEEEEEEecH
Q 002252 735 TAEIRAFKIISEQGIASGIRRIEAVAGE 762 (947)
Q Consensus 735 TgeIg~~kIl~~~~~~~Gv~RI~~v~G~ 762 (947)
||+||.|+|++.+++++|++||+|+||.
T Consensus 711 TgeIg~fkIls~s~i~~GvrRIeavtG~ 738 (739)
T 2ztg_A 711 TGEIGMLKILKVESIQDGVIRFEFAAGE 738 (739)
T ss_dssp GGGGCCEEEEEEEEEETTEEEEEEEESC
T ss_pred HhHcCcEEEEEEeEEcCCEEEEEEEecC
Confidence 9999999999999999999999999995
No 3
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=6.9e-173 Score=1442.59 Aligned_cols=451 Identities=46% Similarity=0.842 Sum_probs=419.8
Q ss_pred CCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCccccccccc--c--CCccccC
Q 002252 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIR--T--NDVENVG 122 (947)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR--~--nDldnVG 122 (947)
||++|||++||+||++|||++|||||||| +|||||||||||+||||||+|+++||++|+|+|||||| + |||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiRag~~hNDlenVG 82 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVG 82 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCCCCceeccccccccCCCcccHhhcC
Confidence 89999999999999999999999999999 89999999999999999999999999999999999999 4 4999999
Q ss_pred CCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcc
Q 002252 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFW 202 (947)
Q Consensus 123 ~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW 202 (947)
+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+||++||++.+|||++||+++|.+||||
T Consensus 83 ~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~G~p~~rI~~~g~~dNFW 162 (465)
T 1yfs_A 83 YTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFW 162 (465)
T ss_dssp TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHEE
T ss_pred CCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCCCHHHHHHHHHhcCCCHHHeeeCCCcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCCC
Q 002252 203 NSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPN 282 (947)
Q Consensus 203 ~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s 282 (947)
+||+|||||||||||||+|++++. |+|||||||||||||||+++|+|.|||+||||||||||||+|||||++|
T Consensus 163 ~mG~tGPCGPCsEI~yD~g~~~~~-------~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~s 235 (465)
T 1yfs_A 163 QMGDVGPCGPSSEIYVDRGEEYEG-------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNS 235 (465)
T ss_dssp ESSSSEEEEEEEEEEEECCTTSCH-------HHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSS
T ss_pred cCCCCcCCCCCeEEEEccCCCCCC-------CCCEEEeeeeeeeEEEecCCCccccCCCCceecCcCHHHHHHHHcCCCc
Confidence 999999999999999999998762 7899999999999999999999999999999999999999999999999
Q ss_pred CccccccHHHHHHHHHHhCCCccCCccccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 002252 283 NYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKG 362 (947)
Q Consensus 283 ~ydtdlf~p~i~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~~ 362 (947)
|||||+|.|||++|++++|++|+.+. ..++++||||||+||++|||+||++|||+|||||||||||||+|++++||++.
T Consensus 236 nYdtDlf~pii~~i~~~~g~~Y~~~~-~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~~Lg~~~ 314 (465)
T 1yfs_A 236 NFEIDIIFPLIQFGEEVSGKKYGEKF-ETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIEN 314 (465)
T ss_dssp GGGSTTTHHHHHHHHHHHCCCTTSCH-HHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchhhhHHHHHHHHHHHhCCCCCCCc-ccceeEEEEcchhhhhhhhhccccccCCCCcchHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999997543 56789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccch
Q 002252 363 DGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSG 442 (947)
Q Consensus 363 ~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~~g~~~~l~g 442 (947)
| ||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ +++++|+ ++|||
T Consensus 315 ~--------fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~----~~~~~~~-~~l~G 381 (465)
T 1yfs_A 315 P--------FLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQ----KALEEGR-KTLSG 381 (465)
T ss_dssp C--------CHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTC-CEECH
T ss_pred h--------hHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCC-CcCCH
Confidence 9 999999999999999999999999999999999999999999999999999998 5544443 57999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhccccc-ccCchhHhhhhCCCCccccccccc
Q 002252 443 QDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKL-SVDDSADLAEKIPDTEFLGYDTLS 519 (947)
Q Consensus 443 ~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~-~~~~~~~l~~~~~~t~f~gY~~~~ 519 (947)
++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.... ...+...+.+...+|+|+||+.++
T Consensus 382 ~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~~~~~~~~~~~~~ll~~~~~seF~GY~~~~ 459 (465)
T 1yfs_A 382 KEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAALE 459 (465)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC---------CCCCCTTCHHHHTTSBCGGGC-
T ss_pred HHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhhcCccchhHHHHHHhhccCCceeecchhhh
Confidence 99999999999999999999999999999999999999999999987643211 111112222223578999998664
No 4
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=4.6e-170 Score=1412.16 Aligned_cols=421 Identities=52% Similarity=0.918 Sum_probs=406.6
Q ss_pred CCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCcccccccccc----CCccccC
Q 002252 48 SSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENVG 122 (947)
Q Consensus 48 ~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~----nDldnVG 122 (947)
+|++|||++||+||++|||++|||||||| +|||||||||||+||||||+|+++||++|+||||||||+ |||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~gGKHnDlenVG 81 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVG 81 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCCCCCccccccceecCCCCCCHHhhC
Confidence 58999999999999999999999999999 899999999999999999999999999999999999999 9999999
Q ss_pred CCCCcccccccccCcccCcccHHHHHHHHHHhhh--cccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccC----
Q 002252 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFST--VEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMG---- 196 (947)
Q Consensus 123 ~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt--~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~---- 196 (947)
+|+|||||||||||||||||||+|||.||||||| ++|||||+|||||||.+|+||++||++.+|||++||+++|
T Consensus 82 ~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~D~Ea~~iW~~~~Gvp~~rI~~~g~~~~ 161 (441)
T 3hy0_A 82 YTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKG 161 (441)
T ss_dssp TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEECSTTS
T ss_pred CCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCCCHHHHHHHHHccCCCHHHeeecCcccc
Confidence 9999999999999999999999999999999999 6699999999999999999999999999999999999999
Q ss_pred ---CCCCcccCCCCCCCCCceEEEeecCCCCCCCCC--CCCCCCceEEEeeeecccccccCCCccccCccCcccccchHH
Q 002252 197 ---ADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDV--DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLE 271 (947)
Q Consensus 197 ---~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~--~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlE 271 (947)
.+||||+||+|||||||||||||+|+.++++.+ +.+||+|||||||||||||||+++|+|.|||+||||||||||
T Consensus 162 ~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLE 241 (441)
T 3hy0_A 162 APYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLE 241 (441)
T ss_dssp BTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHH
T ss_pred ccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCccccCCCCceecCCCHH
Confidence 899999999999999999999999999875433 348899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccHHHHHHHHHHhCCCccCCccccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHH
Q 002252 272 RIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRA 351 (947)
Q Consensus 272 Ri~~vlqg~~s~ydtdlf~p~i~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa 351 (947)
||+|||||++||||||+|.|||+++++++|.+|. .++++||||||+||++|||+||++|||+|||||||||||||
T Consensus 242 Rla~vlQg~~snYdtDlf~pii~~i~~~~g~~~~-----~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRA 316 (441)
T 3hy0_A 242 RIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL-----SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRA 316 (441)
T ss_dssp HHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCCCT-----TCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccchhHHHHHHHHHHHhCCCcc-----ccceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHHH
Confidence 9999999999999999999999999999999872 46799999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002252 352 VRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRT 431 (947)
Q Consensus 352 ~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~ 431 (947)
+||+++||++.| ||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++ ++
T Consensus 317 vr~g~~Lg~~~~--------fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~----~~ 384 (441)
T 3hy0_A 317 VRHGNMLGAKET--------FFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELA----KL 384 (441)
T ss_dssp HHHHHHHTCCSC--------CGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----SC
T ss_pred HHHHHHhCCCCc--------cHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh
Confidence 999999999999 999999999999999999999999999999999999999999999999999997 54
Q ss_pred hcCCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHh
Q 002252 432 RESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 489 (947)
Q Consensus 432 ~~~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~ 489 (947)
+ + ++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 385 ~--~--~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 385 S--G--DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp C--S--SEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred c--C--CCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhc
Confidence 2 2 5899999999999999999999999999999999999999999999999975
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=7.4e-56 Score=472.50 Aligned_cols=228 Identities=23% Similarity=0.295 Sum_probs=208.4
Q ss_pred cccccccc---cceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEEEe
Q 002252 511 EFLGYDTL---SAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKS 587 (947)
Q Consensus 511 ~f~gY~~~---~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~k~ 587 (947)
+.++|++. +++|+|+++..+ ++.++|+||+|||||||||||+|+|+|. .++|.+|++.
T Consensus 4 ~~ly~~d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----------~~~V~~v~~~ 64 (241)
T 3kew_A 4 TKLYYEDQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----------GIKVLDVYEE 64 (241)
T ss_dssp EEGGGTCTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----------TEEEEEEEEE
T ss_pred hhhhhhCcccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----------eEEEEEEEEe
Confidence 66778764 789999999864 2358999999999999999999999994 4799999999
Q ss_pred cCCEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCH
Q 002252 588 LGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLD 667 (947)
Q Consensus 588 ~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 667 (947)
+|.++|++. +++++|++|.+.|||+||+++|++|||+|||++||+++||.+ +.|++++++++||||+ +++|+
T Consensus 65 -~g~i~H~~~---~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~ 136 (241)
T 3kew_A 65 -EGKVYHVLE---KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDE 136 (241)
T ss_dssp -TTEEEEEES---SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCH
T ss_pred -CCEEEEEEC---CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCH
Confidence 799999986 678899999999999999999999999999999999999987 5899999999999999 68999
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhccccccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeee
Q 002252 668 TELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQ 747 (947)
Q Consensus 668 eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~ 747 (947)
+++.+||++||++|++|+||++.+++++||++++++++ +++|++.||||+||++|.++||||||+|||+||.|+|++.+
T Consensus 137 e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~~~-~e~~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~ 215 (241)
T 3kew_A 137 KTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRRA-LPKTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWE 215 (241)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCCSSC-CCCCSSCCCEEEETTTEEEECCSCCCSBSGGGCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcChhhc-CCccCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEEEEEe
Confidence 99999999999999999999999999999999887665 67799999999999999999999999999999999999999
Q ss_pred ccccceEEEEEEecHHHHHH
Q 002252 748 GIASGIRRIEAVAGEAFIEY 767 (947)
Q Consensus 748 ~~~~Gv~RI~~v~G~~A~~~ 767 (947)
++++| +||+|+||.+|++.
T Consensus 216 ~~~~~-~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 216 KHKNA-TRIEYVAGNRAVSE 234 (241)
T ss_dssp EETTE-EEEEEEEGGGGC--
T ss_pred ccCCc-EEEEEEECHHHHhc
Confidence 98655 59999999999764
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=3.9e-51 Score=429.74 Aligned_cols=208 Identities=29% Similarity=0.371 Sum_probs=188.7
Q ss_pred CCccccccc---ccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCcccceeEEEEEEE
Q 002252 509 DTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 585 (947)
Q Consensus 509 ~t~f~gY~~---~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~~~~~~~V~dv~ 585 (947)
+|+.++|++ .+++|+|+++. + .+|+||+|||||||||||+|+|+|. .++|.||+
T Consensus 4 ~t~~ly~~d~y~~~~~a~V~~~~-~------------~~vvld~T~Fype~GGQ~~D~G~i~----------~~~V~~v~ 60 (216)
T 2e1b_A 4 MTRKLYYEDAYLKEAKGRVLEIR-D------------NAILLDQTIFYPTGGGQPHDRGTIN----------GVEVLDVY 60 (216)
T ss_dssp SCCCSTTSCTTCCEEEECBCCCC-S------------SCCCBSCCCSCCCCTTCCCCCEEET----------TEEEEEEE
T ss_pred hhHHHHhhCcccceeeEEEEEEe-C------------CEEEEeCCCccCCCCCCCCCEEEEc----------cEEEEEEE
Confidence 577888887 46789999983 1 1699999999999999999999994 27899999
Q ss_pred EecCCEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCc-ceeccccccCCcEEEeecCCCC
Q 002252 586 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQE-TSQAGSLVAFDRLRFDFNFHRP 664 (947)
Q Consensus 586 k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~-v~q~Gs~v~~d~~r~Df~~~~~ 664 (947)
+..+|.++|++.. .+++++|++|.+.|||+||+.+|++|||+|||++||+++||.+ +.+.|++++++++||||+++++
T Consensus 61 ~~~~~~i~H~~~~-~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~ 139 (216)
T 2e1b_A 61 KDEEGNVWHVVKE-PEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN 139 (216)
T ss_dssp CCTTCCCEEEESC-GGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC
T ss_pred ECcCCEEEEEEcc-CCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCC
Confidence 8646899999975 4678999999999999999999999999999999999999983 3457999999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhccccccCCCCCCcEEEEEECCccccccCccccccccccceEEEE
Q 002252 665 LLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKII 744 (947)
Q Consensus 665 lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl 744 (947)
++++ +.+||++||++|++|+||++.+++. ||||+||++|.++||||||+|||+||.|+|+
T Consensus 140 lt~e-l~~IE~~vn~~I~~~~pv~~~~~~~-------------------vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~ 199 (216)
T 2e1b_A 140 LNKY-KEQIISLFNKYVDEGGEVKIWWEGD-------------------RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKL 199 (216)
T ss_dssp GGGG-HHHHHHHHHHHHHHCCBEEEEESSS-------------------CEEEEETTSCEECCCSCCCSBGGGTCCEEEE
T ss_pred CCHH-HHHHHHHHHHHHhcCCCEEEEEcCC-------------------EEEEEECCEEEECCCCCCcccHhhCceEEEE
Confidence 9987 9999999999999999999998763 8999999999999999999999999999999
Q ss_pred eeeccccceEEEEEEe
Q 002252 745 SEQGIASGIRRIEAVA 760 (947)
Q Consensus 745 ~~~~~~~Gv~RI~~v~ 760 (947)
+++++++|+|||+|..
T Consensus 200 ~~~~~~~g~rRi~~~l 215 (216)
T 2e1b_A 200 KRSSIGRGKQRLEMWL 215 (216)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEeEEcCCEEEEEEEE
Confidence 9999999999999963
No 7
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=5.3e-26 Score=227.15 Aligned_cols=143 Identities=24% Similarity=0.276 Sum_probs=119.2
Q ss_pred hHHhhccHHHHHHHHHHhHhCCcceeccc-cccCCcEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHH
Q 002252 620 RAKVHHTATHLLQAALKKVIGQETSQAGS-LVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAK 698 (947)
Q Consensus 620 ~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs-~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~ 698 (947)
..|++|||+|||++|++++||.++.+.++ .+.++++++||++.+++|++++.+||+.||++|++|+||+..+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 57999999999999999999955555554 56655677777766789999999999999999999999999999999999
Q ss_pred HhccccccCC-CCC---CcEEEEEECCccccccCccccccccccceEEEEeeec-cccceEEEEEEecH
Q 002252 699 RAGAIAMFGE-KYG---EQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQG-IASGIRRIEAVAGE 762 (947)
Q Consensus 699 ~~~~~~l~~e-ky~---~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~-~~~Gv~RI~~v~G~ 762 (947)
+++...++.. .++ +.||||+||++|.++||||||+|||+||.|+|++.++ .+++..||+|..+.
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~ 152 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLE 152 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred HhhCccccccccCCCCCCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence 8754334421 122 5799999999999999999999999999999999875 44666799998764
No 8
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=99.92 E-value=4.5e-24 Score=216.00 Aligned_cols=170 Identities=25% Similarity=0.352 Sum_probs=154.9
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccceeecccCCeEEEE
Q 002252 760 AGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLV 839 (947)
Q Consensus 760 ~G~~A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~~l~~~~~~~~~~~~~~vv~ 839 (947)
.|.+|++|+++.++++++++..|++++++++++|++|++++++++|++++|+.+++...++++..++..+ +++++++
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i---~g~~~~~ 77 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEF---DSMKVVA 77 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEES---SSCEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEe---CCEEEEE
Confidence 4889999999999999999999999999999999999999999999999999999999999988888777 8999998
Q ss_pred EEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceee
Q 002252 840 ESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQA 919 (947)
Q Consensus 840 ~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQG 919 (947)
..+ +.|++.|+.+++.++++ + .+++|++ ..++ +.++++++++ +++|++|++++++.+||||||+|+||||
T Consensus 78 ~~~-~~d~~~lr~~~~~l~~~--~-~vv~l~~-~~~~-~~~v~~~~~~----~~~a~~lvk~~~~~~gGkGGGkp~~AQg 147 (171)
T 2zvf_A 78 EVV-DADMQALQKLAERLAEK--G-AVGCLMA-KGEG-KVFVVTFSGQ----KYDARELLREIGRVAKGSGGGRKDVAQG 147 (171)
T ss_dssp EEC-SCCHHHHHHHHHHHHHT--T-EEEEEEE-ECSS-SEEEEEEESS----SSCHHHHHHHHHHHHTEECCBCSSEEEE
T ss_pred EEe-CCCHHHHHHHHHHHhcC--C-CEEEEEE-cCCC-eEEEEEECCC----CCCHHHHHHHHHHHcCCCCCCcHHHccc
Confidence 888 88999999999999998 4 4777776 4566 7788888776 5999999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHHHh
Q 002252 920 GGRKPENLSIALEKARADLVSVL 942 (947)
Q Consensus 920 ~g~~~~~l~~al~~~~~~l~~~L 942 (947)
+|++++.++++++.+.+++++.+
T Consensus 148 gg~~~~~l~~al~~~~~~~~~~~ 170 (171)
T 2zvf_A 148 AVQQLLDREEMLDVIFRFLSEHE 170 (171)
T ss_dssp EESSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999987654
No 9
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.92 E-value=2.5e-24 Score=227.36 Aligned_cols=164 Identities=20% Similarity=0.314 Sum_probs=136.2
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEccccc-hhHHhhccHHHHHHHHHHhHhCC-cceeccccccCCcEEEeecCCCCCC
Q 002252 589 GSVFVHKGTIREGVLEVGREVEAIVDPKLR-QRAKVHHTATHLLQAALKKVIGQ-ETSQAGSLVAFDRLRFDFNFHRPLL 666 (947)
Q Consensus 589 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR-~~~m~~HTA~HLLsaAL~~~lG~-~v~q~Gs~v~~d~~r~Df~~~~~lt 666 (947)
+|.+++. ..++..|+.|+ .|+++.+ -..|++|||+|||++|++++||. ++.+ | +..++++|+||++.+++|
T Consensus 41 Ng~l~dL----~~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~-g-~~~~~g~y~d~~~~~~~t 113 (224)
T 1tke_A 41 NGELVDA----CDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAI-G-PVIDNGFYYDVDLDRTLT 113 (224)
T ss_dssp TTEEEET----TCCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-C-CEETTEEEEEEECSSCCC
T ss_pred CCEEecc----ceEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEE-C-CccCCeEEEEEeCCCCCC
Confidence 6777763 24577888887 4788766 48999999999999999999974 4433 4 445889999999888999
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhcc-------ccccCC-C-CCCcEEEEEECCccccccCccccccccc
Q 002252 667 DTELEEIERLINGWIGDANLLQTKVMALDDAKRAGA-------IAMFGE-K-YGEQVRVVEVPGVSMELCGGTHVNNTAE 737 (947)
Q Consensus 667 ~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~-------~~l~~e-k-y~~~VRVV~Igg~d~e~CgGTHV~nTge 737 (947)
+++|.+||+.||++|++|+||+..+++++||.+++. .+++.+ . +++.||||+||++ .++||||||+|||+
T Consensus 114 ~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~-~dlC~G~Hv~~Tg~ 192 (224)
T 1tke_A 114 QEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRGPHVPNMRF 192 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTE-EEEESCCCCSBGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCE-EEECCCcCCCcCcc
Confidence 999999999999999999999999999999998653 234433 3 5678999999985 79999999999999
Q ss_pred cceEEEEeeec-------cccceEEEEEEe
Q 002252 738 IRAFKIISEQG-------IASGIRRIEAVA 760 (947)
Q Consensus 738 Ig~~kIl~~~~-------~~~Gv~RI~~v~ 760 (947)
||.|+|++.++ ..+-..||+.+|
T Consensus 193 i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a 222 (224)
T 1tke_A 193 CHHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (224)
T ss_dssp CCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred cceEEEEEecceeEcCCCCCceeEEEEEec
Confidence 99999999865 244577999876
No 10
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.86 E-value=1.3e-21 Score=236.09 Aligned_cols=169 Identities=22% Similarity=0.349 Sum_probs=139.1
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHH
Q 002252 589 GSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDT 668 (947)
Q Consensus 589 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~e 668 (947)
+|.+++. ..++..+..|+..-..+.+...|++|||+|||++|++++||.+..+.|+.+ ++++|+||++..++|++
T Consensus 43 ng~~~dl----~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~e 117 (645)
T 1nyr_A 43 NGQLVDL----TKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSD 117 (645)
T ss_dssp TTEEECT----TSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCST
T ss_pred CCEEEeC----CcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCCCHH
Confidence 5766652 234666666666444555678999999999999999999998777889987 89999999988899999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhccc-----cccCCCC-CCcEEEEEECCccccccCccccccccccceEE
Q 002252 669 ELEEIERLINGWIGDANLLQTKVMALDDAKRAGAI-----AMFGEKY-GEQVRVVEVPGVSMELCGGTHVNNTAEIRAFK 742 (947)
Q Consensus 669 el~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~-----~l~~eky-~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~k 742 (947)
++.+||+.||++|.+|+||+..+++.+||.+++.. .++.... ++.||||+||++ .++||||||+|||+||.|+
T Consensus 118 dl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~~-~dlC~G~Hv~~Tg~i~~fk 196 (645)
T 1nyr_A 118 DFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF-TDLCRGVHVPSTAKIKEFK 196 (645)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTE-EEECCSCCCSCGGGCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECCE-EEecCCcccCCCCCCceEE
Confidence 99999999999999999999999999999987431 1221111 258999999996 7899999999999999999
Q ss_pred EEeee-------ccccceEEEEEEecHH
Q 002252 743 IISEQ-------GIASGIRRIEAVAGEA 763 (947)
Q Consensus 743 Il~~~-------~~~~Gv~RI~~v~G~~ 763 (947)
|++.+ +..+...||+.++...
T Consensus 197 l~~~~~a~~~~~~~~~~l~ri~g~~~~~ 224 (645)
T 1nyr_A 197 LLSTAGAYWRGDSNNKMLQRIYGTAFFD 224 (645)
T ss_dssp EEEEEEEETTSCSSSCEEEEEEEEEESS
T ss_pred EeeeCchHHHHHhHHHHHHHHHHHhcCC
Confidence 99986 4556788999998744
No 11
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.84 E-value=1.3e-20 Score=226.77 Aligned_cols=165 Identities=18% Similarity=0.309 Sum_probs=133.1
Q ss_pred CCEEEEEEEeeccccCCCCEEEEEEccc-cchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCH
Q 002252 589 GSVFVHKGTIREGVLEVGREVEAIVDPK-LRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLD 667 (947)
Q Consensus 589 ~g~ivH~~~~~~g~l~~G~~V~~~VD~~-rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 667 (947)
+|.+++.- .++..+.+|+ -|+++ .+-..|++|||+|||++|++++||....+.|+++. +++|+||++..++|+
T Consensus 41 ng~~~dl~----~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~~t~ 114 (642)
T 1qf6_A 41 NGELVDAC----DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQ 114 (642)
T ss_dssp TTEEEETT----SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSCCCH
T ss_pred CCEEeccc----cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCCCCCH
Confidence 67777632 3466665555 45555 56789999999999999999999752236788875 789999999889999
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhccc-------ccc-CCCCC-CcEEEEEECCccccccCcccccccccc
Q 002252 668 TELEEIERLINGWIGDANLLQTKVMALDDAKRAGAI-------AMF-GEKYG-EQVRVVEVPGVSMELCGGTHVNNTAEI 738 (947)
Q Consensus 668 eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~-------~l~-~eky~-~~VRVV~Igg~d~e~CgGTHV~nTgeI 738 (947)
++|.+||+.||++|++|+||+..+++++||.+++.. .++ .+.+. +.||||+||++ .++|+||||+|||+|
T Consensus 115 edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~-~dlC~GpHv~~Tg~I 193 (642)
T 1qf6_A 115 EDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRGPHVPNMRFC 193 (642)
T ss_dssp HHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTE-EECCSSCCCSBGGGC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCE-EEecCCCccCCCCcc
Confidence 999999999999999999999999999999987432 222 22222 57999999986 799999999999999
Q ss_pred ceEEEEeeec---c----ccceEEEEEEe
Q 002252 739 RAFKIISEQG---I----ASGIRRIEAVA 760 (947)
Q Consensus 739 g~~kIl~~~~---~----~~Gv~RI~~v~ 760 (947)
|.|||++.++ . ..-+.||+-.+
T Consensus 194 ~~fkl~~~~~~yw~g~~~~~~l~r~~g~~ 222 (642)
T 1qf6_A 194 HHFKLMKTAGAYWRGDSNNKMLQRIYGTA 222 (642)
T ss_dssp CSEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred eeEEEeeeccccccCccCCceeEeeeccc
Confidence 9999999887 2 33466898776
No 12
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=99.68 E-value=1.8e-16 Score=149.61 Aligned_cols=104 Identities=24% Similarity=0.486 Sum_probs=95.6
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCC
Q 002252 833 NEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGG 912 (947)
Q Consensus 833 ~~~~vv~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGG 912 (947)
+++++++..+++.|++.||.+++.|+++.++ .+++|++ ..++++.++++++++++++ ++|++|++++++.+||||||
T Consensus 7 ~g~~~~~~~~~~~d~~~Lr~~~~~l~~~~~~-~vvvl~~-~~~~kv~~v~~v~~~~~~~-~~A~~lvk~v~~~~gGkGGG 83 (111)
T 3g98_A 7 GDFTLHYGVFEEVEPEELRNLADMLRQRTKK-DVVFIAS-RKGDKINFVIGVSKEISDK-VNAKEVIREVGKVLKGGGGG 83 (111)
T ss_dssp TTEEEEEEEEESCCHHHHHHHHHHHTTSSSS-EEEEEEE-EETTEEEEEEEECGGGTTT-SCHHHHHHHHHHHTTBCCEE
T ss_pred CCEEEEEEEeCCCCHHHHHHHHHHHHhhcCC-cEEEEEE-ecCCcEEEEEEECHHHhcc-CCHHHHHHHHHHHcCCCcCC
Confidence 8999999999999999999999999998776 4777776 5678999999999998876 99999999999999999999
Q ss_pred cccceeeccCCcccHHHHHHHHHHHHH
Q 002252 913 RPNFAQAGGRKPENLSIALEKARADLV 939 (947)
Q Consensus 913 k~~~AQG~g~~~~~l~~al~~~~~~l~ 939 (947)
+|+||||+|++++++++||+.++++++
T Consensus 84 kp~~AQggg~~~~~l~~al~~~~~~l~ 110 (111)
T 3g98_A 84 RADLAQGGGKAPDKFPEAVKLLKEILS 110 (111)
T ss_dssp CSSEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred cHHHeeecCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998874
No 13
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=91.61 E-value=0.28 Score=53.31 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCC-CCccceec-----cccccc----cccccccCC---------CCCCCcccccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTI-----AGMLQF----KPIFLGKVP---------RQVPRAATSQR 111 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~-d~tllftn-----AGm~qf----k~~f~g~~~---------p~~~r~~~~Qk 111 (947)
+.|.+.+-+||.++|...|..--+.+. | ++-.. |=|.++ ++++|-+.+ .+..|+-..-+
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig~ 96 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSP 96 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccChHHHHHHHhhcCccceEEEEc
Confidence 567788889999999988875433332 1 11111 112111 123332111 13568888899
Q ss_pred ccccCCccccCCCCCcccccccccC-cccCcccHHHHHHHHHHhhhccc
Q 002252 112 CIRTNDVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTVEF 159 (947)
Q Consensus 112 CiR~nDldnVG~t~rHhTfFEMlGn-~SfgdYfK~eai~~awe~lt~~l 159 (947)
|.|.-+ +.. .|+||..=|.|++- .+|.|| .|.+..+.+|+...+
T Consensus 97 ~FR~E~-pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 97 NIRLES-RQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EECCCC-GGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred cEeCCC-CCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 999854 002 25799988888875 444563 688888888876553
No 14
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=91.18 E-value=0.66 Score=49.23 Aligned_cols=177 Identities=24% Similarity=0.319 Sum_probs=108.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceecccccccccc-ccccCCCCCCCccccccccccCCc---
Q 002252 43 SQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV--- 118 (947)
Q Consensus 43 ~~~~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~~-f~g~~~p~~~r~~~~QkCiR~nDl--- 118 (947)
-...+|+-++|-.+--+|..++|..++.++.+= .|--.|-|. ||..--|..=+++-+|+|-|-.|=
T Consensus 20 ~~~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E----------vGAGT~hPaTfLRalGpePw~~AYVqPsRRP~DGRYG 89 (311)
T 3rf1_A 20 FQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMP----------AGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYG 89 (311)
T ss_dssp CGGGSCCHHHHHHHHHHHHHTTTCEECCCCSSC----------CSSGGGSHHHHTTTSSSSCEEEEEEEEEECGGGCCTT
T ss_pred eccCcCcHHHHHHHHHHHHHHCCCEEECCcccc----------ccCCCCCHHHHHHhcCCCcceeeeeccCCCCCCCCcC
Confidence 344568999999999999999999998877652 233467784 554444444579999999998652
Q ss_pred cccCCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCC
Q 002252 119 ENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGAD 198 (947)
Q Consensus 119 dnVG~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~ 198 (947)
||=-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.|||||.. |=+||- +
T Consensus 90 eNPNR-Lq~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~~-------------------------HDIRFV-E 136 (311)
T 3rf1_A 90 ENPNR-LGAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLKS-------------------------HDIRFV-E 136 (311)
T ss_dssp CCSSC-CSEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGGG-------------------------SCEEEE-E
T ss_pred CCchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------cCeeEe-c
Confidence 23332 33555555543334333 001111111 246666654 234552 4
Q ss_pred CCcccCCCC-CCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHH
Q 002252 199 DNFWNSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARIL 277 (947)
Q Consensus 199 dnfW~~G~~-GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vl 277 (947)
|| |+ -+| |--|-==|+-.| .+||=- |+=|.+ ..| + ++....+.-=+||||||+.|
T Consensus 137 Dn-WE-sPTLGAWGLGWEVWld-----------------GMEVTQ--FTYFQQ-vGG-i-~c~pv~~EITYGLERlamyl 192 (311)
T 3rf1_A 137 DN-WE-SPSLGAWGLGWEVWLD-----------------GMEVTQ--FTYFQQ-VGG-I-AVDLVSAEITYGLERIAMYL 192 (311)
T ss_dssp CC-EE-ETTTTEEEEEEEEEET-----------------TEEEEE--EEEEEE-ETT-E-ECSSCCEEEEEEHHHHHHHH
T ss_pred cC-CC-CCcccccccceEEEEc-----------------CeeEee--eeeeee-eCC-c-cccccceeeehhHHHHHHHH
Confidence 55 65 222 555555566653 266643 333333 344 2 45556777889999999999
Q ss_pred hCCCCCccc
Q 002252 278 QKVPNNYET 286 (947)
Q Consensus 278 qg~~s~ydt 286 (947)
||+.|+||.
T Consensus 193 Q~vd~vyDl 201 (311)
T 3rf1_A 193 QNVDNVYDI 201 (311)
T ss_dssp TTCSSGGGS
T ss_pred hCCCeeeec
Confidence 999999986
No 15
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=87.43 E-value=1.7 Score=45.92 Aligned_cols=173 Identities=27% Similarity=0.349 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceecccccccccc-ccccCCCCCCCccccccccccCCc---cccC
Q 002252 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPI-FLGKVPRQVPRAATSQRCIRTNDV---ENVG 122 (947)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qfk~~-f~g~~~p~~~r~~~~QkCiR~nDl---dnVG 122 (947)
.|--++|-.+--+|..++|..++.++.+= .|--.|-|. ||..--|..=+++-+|+|.|-.|= ||=-
T Consensus 12 ~~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E----------vGAGT~~PaTfLRaLGpepw~~AYVqPsRRP~DGRYGeNPN 81 (298)
T 1j5w_A 12 HMYLQDVIMKLNDFWASKGCLLEQPYDME----------VGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPN 81 (298)
T ss_dssp -CCHHHHHHHHHHHHHHTTCEECCCCSSC----------CSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTT
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEcCcccc----------cccccCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCCch
Confidence 35678899999999999999998877652 233467773 343333333479999999998662 2333
Q ss_pred CCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcc
Q 002252 123 RTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFW 202 (947)
Q Consensus 123 ~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW 202 (947)
+ -.||.=|..+=-=|-.+- .+.=.+=| +.|||||.. |=+||- +|| |
T Consensus 82 R-Lq~y~QfQVilKPsP~ni-----QeLYL~SL-~alGid~~~-------------------------HDIRFV-EDn-W 127 (298)
T 1j5w_A 82 R-LQRYFQYQVIIKPSPENS-----QELYLESL-EYLGINLKE-------------------------HDIRFV-EDN-W 127 (298)
T ss_dssp C-CSEEEEEEEEEESCCSSH-----HHHHHHHH-HHTTCCTTT-------------------------SCEEEE-EEC-C
T ss_pred h-hhhheeeEEEECCCCccH-----HHHHHHHH-HHhCCCccc-------------------------CCceee-ccC-C
Confidence 3 345555665544454430 01111111 246777654 224552 455 6
Q ss_pred cCCCC-CCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCC
Q 002252 203 NSGAT-GPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (947)
Q Consensus 203 ~~G~~-GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~ 281 (947)
+ -+| |.-|-==|+--| .+||=- |+=|.+ ..| .++....+.-=+||||||+.|||+.
T Consensus 128 E-sPTLGAwGLGWEVWld-----------------GMEITQ--FTYFQQ-vGG--i~c~pv~~EITYGLERiamylQ~vd 184 (298)
T 1j5w_A 128 E-SPTLGAWGVGWEVWLD-----------------GMEITQ--FTYFQQ-IGG--ISLKDIPLEITYGLERIAMYLQGVD 184 (298)
T ss_dssp E-EGGGTEEEEEEEEEET-----------------TEEEEE--EEEEEE-BTT--BCCSSCCEEEEEEHHHHHHHHHTCS
T ss_pred C-CCccccccccceeeEc-----------------ceeeeh--hhhhhh-cCC--cccCccceeecccHHHHHHHHhCCC
Confidence 4 222 556666677664 277753 333333 344 2466667788899999999999999
Q ss_pred CCccc
Q 002252 282 NNYET 286 (947)
Q Consensus 282 s~ydt 286 (947)
|+||.
T Consensus 185 ~vydl 189 (298)
T 1j5w_A 185 NVYEV 189 (298)
T ss_dssp SGGGC
T ss_pred ceecc
Confidence 99997
No 16
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=81.92 E-value=8.9 Score=46.18 Aligned_cols=90 Identities=14% Similarity=0.032 Sum_probs=60.0
Q ss_pred EEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCccccee
Q 002252 839 VESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQ 918 (947)
Q Consensus 839 ~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQ 918 (947)
+..-++.....+-.+|..++++...+ ++++. . ++ ..+.|- .++|+.++++.+...+ ++|||.+ +|=
T Consensus 333 v~~~~~wh~GViGIVAsrl~e~~~rP-~iv~a--~--~k---gSaRSi----~g~nl~~~L~~~~~ll-~~gGGH~-~AA 398 (666)
T 2zxr_A 333 VLLDPEGHPGVMGIVASRILEATLRP-VFLVA--Q--GK---GTVRSL----APISAVEALRSAEDLL-LRYGGHK-EAA 398 (666)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHCSC-EEEEE--T--TE---EEEECC----TTCCHHHHHHHTGGGC-SEEEECS-SEE
T ss_pred EEEcCCcCcccHHHHHHHHHHHhCCC-EEEEE--C--CE---EEEECC----CCccHHHHHHHHHhhC-cccCCCh-HHc
Confidence 33345566788888999999987765 55543 2 22 223332 2699999998887654 5677775 444
Q ss_pred eccCCcccHHHHHHHHHHHHHHHh
Q 002252 919 AGGRKPENLSIALEKARADLVSVL 942 (947)
Q Consensus 919 G~g~~~~~l~~al~~~~~~l~~~L 942 (947)
|-.-..++++++.+.+.+.+.+.+
T Consensus 399 G~si~~~~l~~f~~~l~~~~~~~~ 422 (666)
T 2zxr_A 399 GFAMDEALFPAFKARVEAYAARFP 422 (666)
T ss_dssp EEECCGGGHHHHHHHHHHHHHTSC
T ss_pred ccccCcccHHHHHHHHHHHHHHhc
Confidence 433467889999888888876544
No 17
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=62.79 E-value=29 Score=37.31 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcCC---CCccceecccccccc-----cccccc---------------CCCCCCCc
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVPE---DPTVLLTIAGMLQFK-----PIFLGK---------------VPRQVPRA 106 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp~---d~tllftnAGm~qfk-----~~f~g~---------------~~p~~~r~ 106 (947)
...+.+...++|.+.|...+-..++.+. +.+..+....|..+. .+.|-. ...+.-|+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 5788999999999999999999998861 111111111233222 112210 01112267
Q ss_pred cccccccccCCccccCCCCCcccccccccCcccCc---ccHHHHHHHHHHhhhcccCCC
Q 002252 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD---YFKKEAIQWAWEFSTVEFGLP 162 (947)
Q Consensus 107 ~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfgd---YfK~eai~~awe~lt~~l~l~ 162 (947)
....+|.|...- | ..|.--|.|++-+.||. .-=.+.+..+.+++. .|||+
T Consensus 153 feiG~vFR~E~~---~--~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~-~LGl~ 205 (288)
T 3dsq_A 153 FEIGTCYRKESQ---G--AQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLE-AAGIR 205 (288)
T ss_dssp EEEEEEECSCCS---S--SCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHH-HHTCC
T ss_pred EEEeeEEecCCC---C--CCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHH-HcCCC
Confidence 778889886322 3 23545789999988884 112456666666665 46775
No 18
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=59.14 E-value=5 Score=36.87 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
-|++-++-.-++|.++||+||+|+||.+++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 467778888899999999999999998875
No 19
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=53.52 E-value=23 Score=26.10 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRAKAAV 816 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~~la~ 816 (947)
.++.++|+.|..++.+|+.++..|+.-+..
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 467889999999999999999998876654
No 20
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=53.34 E-value=7.8 Score=36.91 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.8
Q ss_pred CcccHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 140 GDYFKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 140 gdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
+.=-|++-.+-.-++|.+.|||||+|+||.++.
T Consensus 90 ~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 90 GPSEPEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp CTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 334566667777899999999999999998864
No 21
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=53.24 E-value=8.1 Score=35.20 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 142 YFKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 142 YfK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
=-|++-++-..++|.+.||+||+++||++++
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 71 SEPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp THHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3577888888899999999999999998875
No 22
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=51.55 E-value=7.9 Score=35.59 Aligned_cols=30 Identities=10% Similarity=0.285 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
-|++-.+---++|.+.||+||+|+||.++.
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 356666667789999999999999998875
No 23
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=50.00 E-value=8.5 Score=35.68 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
+++-.+--.++|.+.||+|++|+||.++.
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 45555666789999999999999998875
No 24
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=49.27 E-value=30 Score=25.55 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRAKAAVY 817 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~ 817 (947)
.++.++|+.|..+...|+.++..|+.-+...
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 4788999999999999999999998766543
No 25
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=48.95 E-value=30 Score=25.23 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRAK 813 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~~ 813 (947)
.++.++|+.|..++.+|++++..|+.-
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 478899999999999999999988753
No 26
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=48.80 E-value=9.9 Score=34.57 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-..++|.+.||+||+++||++.+
T Consensus 72 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 72 NRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 67778888899999999999999998875
No 27
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=48.72 E-value=9.9 Score=34.74 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-..++|.+.||+||+++||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 73 TQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77888888899999999999999998875
No 28
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=48.60 E-value=10 Score=35.31 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=27.4
Q ss_pred ccHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 142 YFKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 142 YfK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
=-|++-++-..++|.+.||+||+++||++.+
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 71 SNNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3478888888999999999999999998875
No 29
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=47.73 E-value=9.6 Score=36.25 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
-|++-.+-.-++|.+.||+||+|+||.+++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 456666777789999999999999998864
No 30
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=46.96 E-value=11 Score=34.43 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-..++|.+.||+||+++||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 73 NKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 67778888899999999999999998875
No 31
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=46.42 E-value=11 Score=34.68 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-..++|.+.||+||+++||.+.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 73 NIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999998875
No 32
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=46.08 E-value=10 Score=36.25 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-.+-.-++|.+.||+||+|+||.++.
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 56666667789999999999999998875
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=45.24 E-value=30 Score=25.11 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRA 812 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~ 812 (947)
.++.++|+.|..++.+|+.++..|+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46889999999999999999988874
No 34
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=45.04 E-value=25 Score=40.74 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcCC--CC--ccceeccccccc-cccccccCC---------CCCCCccccccccccCC
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVPE--DP--TVLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTND 117 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp~--d~--tllftnAGm~qf-k~~f~g~~~---------p~~~r~~~~QkCiR~nD 117 (947)
.|-+.+-+||.++|...|..--+.+. +. ..+-++. | ++++|-+.+ ....|+=..-+|.|.-+
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~----~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~ 258 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTY----FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAEN 258 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEE----TTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceecc----CCccEEcccChHHHHHHHHhcCCCceEEEeccEecCC
Confidence 34456678999999988876545441 11 1111111 1 133333211 13567778889999854
Q ss_pred ccccCCCCCcccccccccC-cccC-cccHHHHHHHHHHhhh
Q 002252 118 VENVGRTSRHHTFFEMLGN-FSFG-DYFKKEAIQWAWEFST 156 (947)
Q Consensus 118 ldnVG~t~rHhTfFEMlGn-~Sfg-dYfK~eai~~awe~lt 156 (947)
. .|+||..=|-||.- .||| || ++.++.+-+++.
T Consensus 259 ---~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 259 ---S-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp ---C-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred ---C-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 3 37899999999997 7898 57 556655555543
No 35
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.14 E-value=50 Score=23.93 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRAK 813 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~~ 813 (947)
.++.++|+.|..++.+|+.++..|+.-
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467889999999999999999888753
No 36
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=39.57 E-value=17 Score=29.22 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-.-+.|.+.+|+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55666777788888999999999998865
No 37
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=39.14 E-value=15 Score=29.26 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 466777778889999999999999998865
No 38
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.11 E-value=76 Score=24.35 Aligned_cols=35 Identities=11% Similarity=0.325 Sum_probs=28.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 784 VKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYK 818 (947)
Q Consensus 784 ~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~ 818 (947)
.+.++|.+++++.-.|....++++..|+.++-..+
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999988999988888776544
No 39
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.86 E-value=54 Score=23.90 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRAK 813 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~~ 813 (947)
.++.++|+.|..++.+|+.++..|+.-
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 467889999999999999999888753
No 40
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=38.82 E-value=34 Score=28.82 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeCChHH--HHHHHHHhcCCCCCcc
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDE--AFEIWNKEVGVPVEHI 192 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e--~~~iW~~~~g~~~~~I 192 (947)
-|++-++-..+.|.+.||+|++++||.+.+-+.+ ++ +|...+.=.++.+
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~-v~~~~~~~~~~~l 66 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA-IWDAEIAPQMEAL 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH-HHHHTTTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE-EEchhhccChhhe
Confidence 4666777778889999999999999999876544 44 5554333333344
No 41
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.49 E-value=55 Score=23.90 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRAK 813 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~~ 813 (947)
.++.++|+.|..++.+|+.+...|+.-
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 478899999999999999999888754
No 42
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=38.33 E-value=16 Score=29.06 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 366677777888999999999999998865
No 43
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=38.09 E-value=1.6e+02 Score=32.69 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccc-ccc-----------ccccccC-----------------C
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGML-QFK-----------PIFLGKV-----------------P 100 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~-qfk-----------~~f~g~~-----------------~ 100 (947)
-..|.+.+.+.|.+.|+..|..-.+.|.+ +|.-+|-. .|. .+.|..+ +
T Consensus 33 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~---l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 109 (401)
T 1evl_A 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRV---LWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRD 109 (401)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH---HHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeccHH---HHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhhh
Confidence 35688888889999999999877776622 22212211 000 1111110 1
Q ss_pred CCCCCccccccccccCCc-cccCCCCCcccccccccCcccCccc--H---HHHHHHHHHhhhcccCCCCCceEEE
Q 002252 101 RQVPRAATSQRCIRTNDV-ENVGRTSRHHTFFEMLGNFSFGDYF--K---KEAIQWAWEFSTVEFGLPANRLWIS 169 (947)
Q Consensus 101 p~~~r~~~~QkCiR~nDl-dnVG~t~rHhTfFEMlGn~SfgdYf--K---~eai~~awe~lt~~l~l~~~~l~vt 169 (947)
.| -|+.-.++|.|.--- +.-|.. |=+. |.|.+-++|++.- . +|.|..+++++. .|||++-++-+.
T Consensus 110 lP-~r~~~~g~~fR~E~~~p~~Gl~-R~re-F~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~-~lgl~~~~~~~~ 180 (401)
T 1evl_A 110 LP-LRMAEFGSCHRNEPSGSLHGLM-RVRG-FTQDDAHIFCTEEQIRDEVNGCIRLVYDMYS-TFGFEKIVVKLS 180 (401)
T ss_dssp CS-EEEEEEEEEECCCCGGGCBTTT-BCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-TTTCSCCEEEEE
T ss_pred CC-hhhccccceecCCCCccccccc-ccCc-EEecceEEeCCHHHHHHHHHHHHHHHHHHHH-HcCCCceEEEEe
Confidence 12 267778888886321 233422 3333 6688888998531 1 257888999986 699976665444
No 44
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.63 E-value=49 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRA 812 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~ 812 (947)
.++.++|+.|..++.+|+.++..|+.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 47889999999999999999988865
No 45
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=37.26 E-value=50 Score=37.48 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC-C-------------------CCccceeccccccccccccccCCCC---CCCcc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP-E-------------------DPTVLLTIAGMLQFKPIFLGKVPRQ---VPRAA 107 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp-~-------------------d~tllftnAGm~qfk~~f~g~~~p~---~~r~~ 107 (947)
..|.+.++++|.++|++.|..-.+++ + |.++.+.-.+=.++-.+|....... .-|++
T Consensus 176 ~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~ 255 (425)
T 2dq3_A 176 RALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLT 255 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccCCeEEE
Q ss_pred ccccccccCC----ccccCCCCCcccccccccCcccC-----cccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHH
Q 002252 108 TSQRCIRTND----VENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAF 178 (947)
Q Consensus 108 ~~QkCiR~nD----ldnVG~t~rHhTfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~ 178 (947)
-.++|.|.-- -+--|....|. |+|..-++|+ +-.-+|.+.+++++|.. |||| |..+
T Consensus 256 ~~g~~FR~E~~~~Gr~~~Gl~R~re--F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~-LGL~----~rvv-------- 320 (425)
T 2dq3_A 256 AYTPCYRREAGAYGKDIRGIIRQHQ--FDKVELVKIVHPDTSYDELEKLVKDAEEVLQL-LGLP----YRVV-------- 320 (425)
T ss_dssp EEEEEECCCCSCCSSSCSSSSSCSE--EEEEEEEEEECGGGHHHHHHHHHHHHHHHHHH-HTCC----EEEE--------
T ss_pred EecCEecCCCCcccccccCcccccc--eEEeeEEEECCHHHHHHHHHHHHHHHHHHHHH-CCCc----eEEE--------
Q ss_pred HHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeeccccc---------
Q 002252 179 EIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYN--------- 249 (947)
Q Consensus 179 ~iW~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~--------- 249 (947)
...+|+-|...-.-|| +|+|.---..|.
T Consensus 321 -------------------------~l~~gdlg~~a~~~~d------------------iE~w~p~~~~~~ei~s~sn~~ 357 (425)
T 2dq3_A 321 -------------------------ELCTGDLGFSAAKTYD------------------IEVWFPSQNKYREISSCSNCE 357 (425)
T ss_dssp -------------------------ECCTTTCCTTCSEEEE------------------EEEEEGGGTEEEEEEEEEECT
T ss_pred -------------------------EecCCcCCChHHhccc------------------hhhccchhHHHHHHHHcCCcc
Q ss_pred -----------ccCCCccccCccCcccccchHHHHHHHH
Q 002252 250 -----------KKDDGSLEPLKQKNIDTGLGLERIARIL 277 (947)
Q Consensus 250 -----------~~~~g~~~~L~~~~iDtGmGlERi~~vl 277 (947)
++++|.-..++..+-=||+|+||+..+|
T Consensus 358 Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~R~i~al 396 (425)
T 2dq3_A 358 DFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAI 396 (425)
T ss_dssp THHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHH
T ss_pred ccCcccCCeEEECCCCCeeEEEEEEeccccHHHHHHHHH
No 46
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=37.16 E-value=95 Score=27.93 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=38.2
Q ss_pred CccchHHHHHHhhhcCCChHHHHHHHHHcCC----eeChhhHHHHHHHH
Q 002252 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (947)
Q Consensus 438 ~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 482 (947)
..|+++++-.++-+.|+|.+.+.+|.++... .||.++|..+|..-
T Consensus 29 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 29 GFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV 77 (106)
T ss_dssp SCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 4799999999999999999989898887544 48889999998654
No 47
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=33.80 E-value=43 Score=39.38 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccccc------cccccccCC---------CCCCCcccccccccc
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF------KPIFLGKVP---------RQVPRAATSQRCIRT 115 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qf------k~~f~g~~~---------p~~~r~~~~QkCiR~ 115 (947)
+.|-+.+-+||.++|...|..--|++.++ .+|-..| ++++|-+.+ ....|+-..-+|.|+
T Consensus 248 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~ 322 (548)
T 3i7f_A 248 SACCGLFREFLTSQKFVEIHTPKLIGCSS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRA 322 (548)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSBC------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEecccC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEec
Confidence 34555667999999998887655555221 1222333 233443221 135677778899998
Q ss_pred CCccccCCCCCcccccccccCc-ccC-cc
Q 002252 116 NDVENVGRTSRHHTFFEMLGNF-SFG-DY 142 (947)
Q Consensus 116 nDldnVG~t~rHhTfFEMlGn~-Sfg-dY 142 (947)
-+. .|.||.+=|.||--. +|+ ||
T Consensus 323 E~~----~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 323 ENS----NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp SCC----CSSSCCSCEEEEEEEEECSSCT
T ss_pred CCC----CCCCcchhhhchhhhhhhhcCH
Confidence 543 378999999999764 787 56
No 48
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=32.37 E-value=1.2e+02 Score=26.21 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=37.9
Q ss_pred CccchHHHHHHhhhcCCChHHHHHHHHHcCC----eeChhhHHHHHHHHH
Q 002252 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQR 483 (947)
Q Consensus 438 ~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~~ 483 (947)
..|+.+++-.++.+.|+|.+.+.++.++... .||.++|...|....
T Consensus 25 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 74 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLIS 74 (95)
T ss_dssp SEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999888888877543 488899999986543
No 49
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.93 E-value=82 Score=22.86 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRA 812 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~ 812 (947)
.++.++|+.|..+..+++.++..|+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46788999999999999999888764
No 50
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=31.62 E-value=70 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRA 812 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~ 812 (947)
.++.++|+.|..+..+|+.++..|+.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 46788999999999999999888865
No 51
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=31.38 E-value=40 Score=27.19 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-.-+.+.+.+|+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66777777788888999999999998865
No 52
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=30.71 E-value=98 Score=28.99 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=37.8
Q ss_pred CccchHHHHHHhhhcCCChHHHHHHHHHcCC----eeChhhHHHHHHHH
Q 002252 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (947)
Q Consensus 438 ~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 482 (947)
..|+|+++-.++-.-|+|.+....|-..... .+|.++|...|.--
T Consensus 47 G~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li 95 (121)
T 3fia_A 47 GFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLI 95 (121)
T ss_dssp TBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred CeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 4799999999999999999999998887554 57889999988543
No 53
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=30.61 E-value=60 Score=34.61 Aligned_cols=170 Identities=16% Similarity=0.215 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhCCCeeeCCcCCcCCCC-ccceeccc------ccccc-ccccccC---------------CCCCCCc
Q 002252 50 GDSIRKRFLDFYASRGHKVLPSASLVPEDP-TVLLTIAG------MLQFK-PIFLGKV---------------PRQVPRA 106 (947)
Q Consensus 50 ~~eiR~~Fl~fF~~~gH~~~~s~slvp~d~-tllftnAG------m~qfk-~~f~g~~---------------~p~~~r~ 106 (947)
...+.+.+-+||.+.|...|.+.++++.+. ..++...+ |..|. ..++-.. ....-|+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rl 158 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKI 158 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEE
Confidence 467889999999999999999999986321 00111111 11111 1222100 0122366
Q ss_pred cccccccccCCccccCCCCCcccccccccCcccCc-ccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhc
Q 002252 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-YFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEV 185 (947)
Q Consensus 107 ~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfgd-YfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~ 185 (947)
-...+|.|..+ .+.+|..=|.|++-..+|. .-=.++...+.++|. .+|++ ..
T Consensus 159 feiG~vFR~E~-----~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~-~lGl~---~~------------------ 211 (290)
T 3qtc_A 159 FEIGPCYRKES-----DGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLN-HLGID---FK------------------ 211 (290)
T ss_dssp EEEEEEECCCS-----CSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHH-HHTCC---CE------------------
T ss_pred EEEcCEEecCC-----CCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHH-HcCCC---cE------------------
Confidence 67778888743 2456877788877666652 111355555555554 35663 11
Q ss_pred CCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCC-CccccCccCcc
Q 002252 186 GVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDD-GSLEPLKQKNI 264 (947)
Q Consensus 186 g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~-g~~~~L~~~~i 264 (947)
+ . +..+|- +|.|-+|+++ +.||.- =+..-..- -. -.|+..+.
T Consensus 212 ------~---~-~~~~~h------pgr~a~i~~~-----------------~~~iG~---G~lhP~vl~~~-~~i~~~v~ 254 (290)
T 3qtc_A 212 ------I---V-GDSCMV------FGDTLDVMHG-----------------DLELSS---ALVGPIPLDRE-WGIDKPWI 254 (290)
T ss_dssp ------E---E-C------------CEEEEEEET-----------------TEEEEE---EEESCCGGGGG-GTCCSCEE
T ss_pred ------E---e-CCCccc------cCCcccEeeC-----------------CEEEEE---EEecHHHHHHh-CCCCCceE
Confidence 1 1 223331 4778888873 145420 11110000 01 12455667
Q ss_pred cccchHHHHHHHHhCCCCC
Q 002252 265 DTGLGLERIARILQKVPNN 283 (947)
Q Consensus 265 DtGmGlERi~~vlqg~~s~ 283 (947)
=-+++||||+.+..|.++.
T Consensus 255 ~~el~le~l~~~~~~~~di 273 (290)
T 3qtc_A 255 GAGFGLERLLKVKHDFKNI 273 (290)
T ss_dssp EEEEEHHHHHHHHHTCSSG
T ss_pred EEEECHHHHHHHHcCCcHH
Confidence 7899999999999988754
No 54
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=29.93 E-value=1e+02 Score=33.81 Aligned_cols=79 Identities=11% Similarity=0.036 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeecCC-CcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccceeeccCCcccHH
Q 002252 850 LKSAAEYLVDTLQDPAAVVLGSCPDE-GKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLS 928 (947)
Q Consensus 850 L~~la~~l~~~~~~~~vvll~s~~~~-~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~AQG~g~~~~~l~ 928 (947)
+..+++.+.+-.+-. +.+++....+ +++.+.+ .|.+ +++++++++.+ +| |||.+..|=+... ..++
T Consensus 258 ~~~~v~~ll~i~gv~-~~~~~~e~~~~~~i~vs~-RS~~----~~~v~~i~~~~---~g--gGGH~~aag~~~~--~~~~ 324 (343)
T 3dma_A 258 SEGFVNIPLSIKNVC-FSCFLREDTEKKMIKISL-RSVG----KFPCNRLAAEF---FN--GGGHLNASGGEFY--GTME 324 (343)
T ss_dssp TTTGGGGGGGSTTCC-EEEEEEECCCC--EEEEE-EESS----SCCHHHHHHHH---TS--CEECSSEEEEEEC--SCHH
T ss_pred HHHHHHHhcccCCEE-EEEEEEEecCCCEEEEEE-ecCC----CCCHHHHHHhC---CC--CCCcHHhCeeEEc--CCHH
Confidence 334566665543433 4445441222 5555443 3432 38888876542 43 5676655544443 4677
Q ss_pred HHHHHHHHHHHHH
Q 002252 929 IALEKARADLVSV 941 (947)
Q Consensus 929 ~al~~~~~~l~~~ 941 (947)
++.+.+.+.+++.
T Consensus 325 ~~~~~~~~~i~~~ 337 (343)
T 3dma_A 325 EAVKVFEQALEKY 337 (343)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776543
No 55
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=29.47 E-value=1e+02 Score=27.13 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=37.8
Q ss_pred CccchHHHHHHhhhcCCChHHHHHHHHHcCC----eeChhhHHHHHHHH
Q 002252 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (947)
Q Consensus 438 ~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 482 (947)
..|+.+++..+..+.|+|-+.+.+|.++... .||.++|...|...
T Consensus 26 G~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 26 GRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 4799999999999999999989998887543 48889999998643
No 56
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.27 E-value=95 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 787 EEVTTRVEGLLEDLRTARNEVANLRAK 813 (947)
Q Consensus 787 ~~l~~~v~~L~~e~k~l~k~l~~L~~~ 813 (947)
.++.++|+.|..++..++.++..|++-
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 467888999999999999988887653
No 57
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=28.29 E-value=21 Score=28.19 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55667777788899999999999998765
No 58
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=27.85 E-value=24 Score=38.26 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=50.9
Q ss_pred cccccccCcccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCC
Q 002252 129 TFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 207 (947)
Q Consensus 129 TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l-~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~ 207 (947)
.+|.|.|...|.-|- +.+.-+++=+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...
T Consensus 209 ~~~~~~g~~v~~~~~--~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~i~~~~~~~lgl~~ek~~--------~~l~~~ 278 (323)
T 3il3_A 209 GYIEMQGNETFKLAV--RELSNVVEETLLANNLDKKDLDWLVPHQANLRIITATAKKLEMDMSQVV--------VTLDKY 278 (323)
T ss_dssp SCCEECHHHHHHHHH--HHHHHHHHHHHHTTTCCTTTCCEEEECCSCHHHHHHHHHHTTCCGGGBC--------CCHHHH
T ss_pred CcEEEcCHHHHHHHH--HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHcCcCHHHhh--------ccHhhc
Confidence 468888887664321 223333443444679999988 666777777777778888999999884 223345
Q ss_pred CCCCCce
Q 002252 208 GPCGPCS 214 (947)
Q Consensus 208 GpcGpcs 214 (947)
|+||.+|
T Consensus 279 GNt~sas 285 (323)
T 3il3_A 279 ANNSAAT 285 (323)
T ss_dssp CBCGGGH
T ss_pred CchHHHH
Confidence 8888877
No 59
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.34 E-value=1.3e+02 Score=25.77 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=37.2
Q ss_pred CccchHHHHHHhhhcCCChHHHHHHHHHcCC----eeChhhHHHHHHHH
Q 002252 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (947)
Q Consensus 438 ~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 482 (947)
..|+.+++-.+..+.|+|.+.+.+|.++... .||.++|...|...
T Consensus 24 G~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~ 72 (92)
T 1fi6_A 24 GFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV 72 (92)
T ss_dssp CEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 4799999999999999998888888877543 48888999988654
No 60
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=27.05 E-value=33 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
=|++-++-..+.|.+.||+|++++||.+.+
T Consensus 74 qK~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 74 TKKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 367778888888999999999999998865
No 61
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.99 E-value=86 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 791 TRVEGLLEDLRTARNEVANLRAKAAVYKA 819 (947)
Q Consensus 791 ~~v~~L~~e~k~l~k~l~~L~~~la~~~a 819 (947)
.-+++|+.++.+|+.++..|++++....+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888887777665543
No 62
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.67 E-value=1.1e+02 Score=21.44 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 793 VEGLLEDLRTARNEVANLRAKAAVY 817 (947)
Q Consensus 793 v~~L~~e~k~l~k~l~~L~~~la~~ 817 (947)
+..|.++...|+|++..|+-+++..
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888777666543
No 63
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=26.36 E-value=37 Score=31.67 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 88888888999999999999999998875
No 64
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=25.77 E-value=39 Score=28.08 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 67777778888999999999999998764
No 65
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=24.96 E-value=92 Score=30.73 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCC---CCCCCCCce
Q 002252 145 KEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSG---ATGPCGPCS 214 (947)
Q Consensus 145 ~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G---~~GpcGpcs 214 (947)
+.|-+||.+ .||+.+.| -.+++++.|++. ..-...-|||.-- ++..|||..
T Consensus 107 ~GA~~fA~~-----~G~~~~~l------~t~~~~~~~~~~--------~~~~~qpn~~~nv~p~~~~~cgpy~ 160 (162)
T 1apy_A 107 ESATTFAQS-----MGFINEDL------STSASQALHSDW--------LARNCQPNYWRNVIPDPSKYCGPYK 160 (162)
T ss_dssp HHHHHHHHH-----TTCCCCCC------CCHHHHHHHHHH--------HHTTSCSCCBCSCBSCTTTCCSCCB
T ss_pred HHHHHHHHH-----cCCCcccc------CCHHHHHHHHHH--------HHhccCCCccccCCCCCCCCCCCCC
Confidence 456667665 58877543 256677777764 1112456999532 356699853
No 66
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=24.85 E-value=2.1e+02 Score=27.46 Aligned_cols=68 Identities=6% Similarity=-0.041 Sum_probs=36.2
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHHHhc-CCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHc
Q 002252 834 EIRVLVESMDDMDADSLKSAAEYLVDTL-QDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLC 906 (947)
Q Consensus 834 ~~~vv~~~~~~~d~~~L~~la~~l~~~~-~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~ 906 (947)
+..+++..++..+...+...+..+.++. ++..++++++ ..+.+ +-+...- ... ...++.|+.+..+.+
T Consensus 44 g~qi~VvtV~sl~g~~ie~yA~~l~~~wgG~ngvLLlVa-~~dRk--i~vg~Gl-~lt-Da~~~~I~~~~~p~f 112 (148)
T 2kpt_A 44 QKVIFVVFLSSFDGVDPETWTQQALQANGGGNVLIYALA-PEERQ--YGIQGGT-QWT-DAELDAANNAAFQAL 112 (148)
T ss_dssp CCEEEEEECSCCTTTCHHHHHHHHHHHHTCSSEEEEEEE-GGGTE--EEEEECT-TSC-HHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEE-eCCCE--EEeccCc-ccC-HHHHHHHHHhccchh
Confidence 4456666677655555566666666543 2224777766 55555 3333222 111 234566777665444
No 67
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=24.53 E-value=22 Score=39.31 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=49.5
Q ss_pred ccccccCcccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCC
Q 002252 130 FFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208 (947)
Q Consensus 130 fFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l-~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~G 208 (947)
+|.|.|...|.-+ -+.+.-+++=+.+..|++++.+ |+=.+....-..+-+.+.+|+|++|+. |.+...|
T Consensus 240 ~~~m~g~~v~~~~--~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~~i~~~~~~~lgl~~ek~~--------~~l~~~G 309 (359)
T 3h78_A 240 EFLMRGRPMFEHA--SQTLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFA--------VTVDRLG 309 (359)
T ss_dssp SCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHHTCCGGGBC--------CCHHHHC
T ss_pred ceEeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCcCHHHhh--------hhhhccc
Confidence 5778777555322 1223333433444679999988 665777777777777888999999874 3334468
Q ss_pred CCCCce
Q 002252 209 PCGPCS 214 (947)
Q Consensus 209 pcGpcs 214 (947)
+||.+|
T Consensus 310 Nt~sAs 315 (359)
T 3h78_A 310 NMASAS 315 (359)
T ss_dssp BCGGGH
T ss_pred chHHHH
Confidence 888876
No 68
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=24.32 E-value=27 Score=38.59 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred cchHHHHHHHHhCCCCCcccccc
Q 002252 267 GLGLERIARILQKVPNNYETDLI 289 (947)
Q Consensus 267 GmGlERi~~vlqg~~s~ydtdlf 289 (947)
|+|+|||++++-|.+|.=|+=+|
T Consensus 318 glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 318 ALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp EEEHHHHHHHHHTCSSGGGGSSS
T ss_pred EEcHHHHHHHHcCCCcHheEecC
No 69
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.31 E-value=52 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=19.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 785 KDEEVTTRVEGLLEDLRTARNEVANLRAKAA 815 (947)
Q Consensus 785 ~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la 815 (947)
.+++|-+-++++.++...+.+++..|++++.
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666543
No 70
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.96 E-value=1.1e+02 Score=27.69 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=37.8
Q ss_pred CccchHHHHHHhhhcCCChHHHHHHHHHcCC----eeChhhHHHHHHHH
Q 002252 438 PRLSGQDAFLLYDTFGFPVEITKEVAEEHGV----SVDMKGFDIEMENQ 482 (947)
Q Consensus 438 ~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 482 (947)
..|+.+++-.++-+.|++-+.+.+|.++... .||.++|..+|...
T Consensus 37 G~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 37 SFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI 85 (110)
T ss_dssp SEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred CeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 4799999999999999998888888887544 48889999998654
No 71
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=23.60 E-value=42 Score=27.43 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 144 KKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 144 K~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66777778888989999999999998864
No 72
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=23.47 E-value=24 Score=38.19 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=50.3
Q ss_pred cccccccCcccCcccHHHHHHHHHHhhhcccCCCCCce-EEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCC
Q 002252 129 TFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRL-WISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGAT 207 (947)
Q Consensus 129 TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l-~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~ 207 (947)
.+|.|.|...|.-+ .+++.-+++-+.+..|++++.+ |+=.+....-..+-+.+.+|+|++++. |.+...
T Consensus 219 ~~~~~~g~~v~~~~--~~~~~~~i~~~l~~~gl~~~did~~~~Hq~~~~i~~~~~~~lgl~~~~~~--------~~l~~~ 288 (333)
T 4dfe_A 219 AFLHMDGQAVFKLA--VNVLEKVAVEALEKANLSAEQIDWLIPHQANIRIMQSTCRKLGLPQERMI--------VTVGEH 288 (333)
T ss_dssp CSCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHTTCCGGGBC--------CCHHHH
T ss_pred cceeeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHhCCCHHHhh--------hhHHhc
Confidence 36788887666421 2233333433344579999887 666777777777788888999999874 223345
Q ss_pred CCCCCce
Q 002252 208 GPCGPCS 214 (947)
Q Consensus 208 GpcGpcs 214 (947)
|+||.+|
T Consensus 289 GNt~sas 295 (333)
T 4dfe_A 289 GNTSAAS 295 (333)
T ss_dssp CBCGGGH
T ss_pred CchHHHH
Confidence 7888776
No 73
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=22.65 E-value=51 Score=26.07 Aligned_cols=17 Identities=53% Similarity=0.815 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCCCCCc
Q 002252 897 KFIGPIAKLCGGGGGGR 913 (947)
Q Consensus 897 ~l~k~l~~~~gGkGGGk 913 (947)
++..+.++++.|+|||.
T Consensus 17 klaeeaakllegggggg 33 (62)
T 2i7u_A 17 KLAEEAAKLLEGGGGGG 33 (62)
T ss_dssp HHHHHHHHHHHCSSCSS
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 45666777777666553
No 74
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=22.01 E-value=32 Score=39.26 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcCCCCccceeccccccc----cccccccCC---------CCCCCccccccccccCCc
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVPEDPTVLLTIAGMLQF----KPIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp~d~tllftnAGm~qf----k~~f~g~~~---------p~~~r~~~~QkCiR~nDl 118 (947)
+|-+.+-+||.++|...|..--+.+.++.- .|-+.+| ++++|-+.+ ....|+-..-+|.|+-+.
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~ 218 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIATATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEH 218 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecCCCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCC
Confidence 555677899999998888654443311000 0001111 223332211 135677788899998654
Q ss_pred cccCCCCCcccccccccC-cccCc-c-----cHHHHHHHHHHhh
Q 002252 119 ENVGRTSRHHTFFEMLGN-FSFGD-Y-----FKKEAIQWAWEFS 155 (947)
Q Consensus 119 dnVG~t~rHhTfFEMlGn-~Sfgd-Y-----fK~eai~~awe~l 155 (947)
+ |.||..=|.||-- .+|.| | .-++-|.+++.-+
T Consensus 219 ~----t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v 258 (438)
T 3nem_A 219 N----TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 258 (438)
T ss_dssp C----CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred C----CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHH
Confidence 3 6899988888864 56767 5 2345555555443
No 75
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=22.00 E-value=32 Score=39.13 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC--CCC--ccceeccccccc-cccccccCCCC---------CCCccccccccccC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP--EDP--TVLLTIAGMLQF-KPIFLGKVPRQ---------VPRAATSQRCIRTN 116 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp--~d~--tllftnAGm~qf-k~~f~g~~~p~---------~~r~~~~QkCiR~n 116 (947)
+.|-+.+-+||.++|...|..--+.+ .++ .++-|+. | ++++|-+ .|. ..|+-..-+|.|.-
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~----~~~~~~L~~-Spql~~~~~~~g~~rvf~ig~~FR~E 212 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQ-SPQLYKELMAGVVERVFEVAPAWRAE 212 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEE----TTEEEEECS-CCHHHHHHHHHHHSEEEEEEEEECCC
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEec----CCceEEecC-CcHHHHHHHHhCcCceEEEccccccc
Confidence 35666788999999998887655544 122 1222221 1 2233421 111 35777888999985
Q ss_pred CccccCCCCCcccccccccC-cccCcccHHHHHHHHHHhhhc
Q 002252 117 DVENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFSTV 157 (947)
Q Consensus 117 DldnVG~t~rHhTfFEMlGn-~SfgdYfK~eai~~awe~lt~ 157 (947)
+.+ ++||..=|-|+.- .+|.|| +|.+..+.+++..
T Consensus 213 ~~~----~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 248 (429)
T 1wyd_A 213 ESD----TPFHLAEFISMDVEMAFADY--NDVMQLLEKILHN 248 (429)
T ss_dssp CCC----SSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred CCc----cccccceeeEeeeeecCCCH--HHHHHHHHHHHHH
Confidence 442 5799988888864 455565 5555555555433
No 76
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=21.11 E-value=33 Score=40.02 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcCC--CC-ccceecccccccc-ccccccCC---------CCCCCccccccccccCCc
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVPE--DP-TVLLTIAGMLQFK-PIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp~--d~-tllftnAGm~qfk-~~f~g~~~---------p~~~r~~~~QkCiR~nDl 118 (947)
.|-+.+-+||.++|...|..--+.|. -. .=.|+.- .+.|. +++|-+.+ ....|+=..-+|.|+-++
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~-~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~ 259 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITY-HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGI 259 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCC
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeee-cccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCC
Confidence 34456678999999888876544441 10 0111110 01121 34443322 135677788999999543
Q ss_pred cccCCCCCccccccccc-CcccCccc-----HHHHHHHHHHhhh
Q 002252 119 ENVGRTSRHHTFFEMLG-NFSFGDYF-----KKEAIQWAWEFST 156 (947)
Q Consensus 119 dnVG~t~rHhTfFEMlG-n~SfgdYf-----K~eai~~awe~lt 156 (947)
+ .||..=|.||= -.+|.||- -++-|.++|.-+.
T Consensus 260 ---~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 260 ---D--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp ---B--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3 38999999986 46788873 4555666666544
No 77
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=21.07 E-value=34 Score=38.82 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhCCCeeeCCcCCcC--CCC--ccceecc-ccccccccccccCCC---------CCCCccccccccccC
Q 002252 51 DSIRKRFLDFYASRGHKVLPSASLVP--EDP--TVLLTIA-GMLQFKPIFLGKVPR---------QVPRAATSQRCIRTN 116 (947)
Q Consensus 51 ~eiR~~Fl~fF~~~gH~~~~s~slvp--~d~--tllftnA-Gm~qfk~~f~g~~~p---------~~~r~~~~QkCiR~n 116 (947)
+.|.+.+-+||.++|...|..--+.+ ..+ .++-++. | ++++|-+ .| ...|+-..-+|.|.-
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g----~~~~L~~-Spel~~~~l~~g~~rvf~ig~~FR~E 203 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFE----KRAYLAQ-SPQLYKQIMVGVFERVYEVAPVWRME 203 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC---------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCC----CcEEeee-CHHHHHHHHhhCCCceeEEeCceECC
Confidence 45667788999999999887544444 121 1222221 1 1233311 11 135777888999985
Q ss_pred CccccCCCCCcccccccccC-cccC-cccHHHHHHHHHHhhhcc
Q 002252 117 DVENVGRTSRHHTFFEMLGN-FSFG-DYFKKEAIQWAWEFSTVE 158 (947)
Q Consensus 117 DldnVG~t~rHhTfFEMlGn-~Sfg-dYfK~eai~~awe~lt~~ 158 (947)
+.+ ++||..=|.|+.- .+|. || +|.++.+.+++...
T Consensus 204 ~~~----~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 204 EHH----TSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAEM 241 (422)
T ss_dssp -------------CCEEEEEEEESCSSH--HHHHHHHHHHHHHH
T ss_pred CCC----CCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHHH
Confidence 432 5799988888875 4555 65 66666666665443
No 78
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=21.04 E-value=34 Score=39.23 Aligned_cols=84 Identities=18% Similarity=0.341 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcCCCC---ccceeccccccc-cccccccCCC--------CCCCccccccccccCCcc
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVPEDP---TVLLTIAGMLQF-KPIFLGKVPR--------QVPRAATSQRCIRTNDVE 119 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp~d~---tllftnAGm~qf-k~~f~g~~~p--------~~~r~~~~QkCiR~nDld 119 (947)
+|-+.+-+||.++|...|..--+.+.++ .-+|. .+-| ++++|-+.+. ...|+=..-+|.|+-++
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~- 236 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQS- 236 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CCCCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSC-
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCcccccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCC-
Confidence 4556677899999988886544433211 11121 1112 2333332211 24677778899997433
Q ss_pred ccCCCCCcccccccccC-cccCcc
Q 002252 120 NVGRTSRHHTFFEMLGN-FSFGDY 142 (947)
Q Consensus 120 nVG~t~rHhTfFEMlGn-~SfgdY 142 (947)
.|.||..=|.||-- .+|.||
T Consensus 237 ---~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 237 ---RTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp ---CCSSCCSEEEEEEEEEESCCH
T ss_pred ---CCCcchHHHHHhHHHHhcCCH
Confidence 37899988888865 567776
No 79
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=20.63 E-value=36 Score=40.05 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=23.9
Q ss_pred CcccccchHHHHHHHHhCCCCCcccccc
Q 002252 262 KNIDTGLGLERIARILQKVPNNYETDLI 289 (947)
Q Consensus 262 ~~iDtGmGlERi~~vlqg~~s~ydtdlf 289 (947)
+|=--|+|+|||++++-|.+|.=|+-+|
T Consensus 512 PhgG~GlGiDRLvMlltg~~nIRdVi~F 539 (548)
T 3i7f_A 512 PHAGCGIGLERITMLYLGIPNIRKVTLF 539 (548)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred CceEEEEcHHHHHHHHhCCccHHHhhcC
Confidence 4566799999999999999998887666
No 80
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=20.44 E-value=2.2e+02 Score=32.46 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=44.7
Q ss_pred CccccccccccCCccccC-CCC--CcccccccccCcccCcc--cHH---HHHHHHHHhhhcccCCC--------CCceEE
Q 002252 105 RAATSQRCIRTNDVENVG-RTS--RHHTFFEMLGNFSFGDY--FKK---EAIQWAWEFSTVEFGLP--------ANRLWI 168 (947)
Q Consensus 105 r~~~~QkCiR~nDldnVG-~t~--rHhTfFEMlGn~SfgdY--fK~---eai~~awe~lt~~l~l~--------~~~l~v 168 (947)
|++-..+|.|- |.-| ..+ |=+- |.|.+-++|+.- -.+ +.|.++++++.+.|||+ .-++.+
T Consensus 151 rl~~~g~~fR~---E~~~~~~GL~R~Re-F~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l 226 (460)
T 3uh0_A 151 RFSDFSPLHRN---EASGALSGLTRLRK-FHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINF 226 (460)
T ss_dssp EEEECCEEECC---CCTTTCBTTTBCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEE
T ss_pred EEEEecCeeeC---CCCCCCCCceeeee-EEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceEEEE
Confidence 56777888887 2222 123 4444 688888899742 223 37899999997789999 555555
Q ss_pred EE----eCChHHHH
Q 002252 169 SV----YEDDDEAF 178 (947)
Q Consensus 169 t~----~~~D~e~~ 178 (947)
.- |-||++.+
T Consensus 227 ~t~pe~~~G~~~~w 240 (460)
T 3uh0_A 227 STRPDHFIGDLKVW 240 (460)
T ss_dssp ECCCSSCCSCHHHH
T ss_pred ccCCcccCCCHHHH
Confidence 43 23555554
No 81
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=20.40 E-value=36 Score=39.88 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcC--CCCc-cceeccccccc-cccccccCC---------CCCCCccccccccccCCc
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVP--EDPT-VLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp--~d~t-llftnAGm~qf-k~~f~g~~~---------p~~~r~~~~QkCiR~nDl 118 (947)
.|-+.+-+||.++|...|..--|.+ ...+ =.|+. -.+.| ++.||-+.+ .-..|+-..-+|.|+-++
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t-~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~ 287 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVT-HHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGV 287 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCC
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeccCCCCccccccc-ccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCC
Confidence 4445566899999988887654443 1111 11210 01112 233433221 135677788899999654
Q ss_pred cccCCCCCcccccccccC-cccCccc-----HHHHHHHHHHhhh
Q 002252 119 ENVGRTSRHHTFFEMLGN-FSFGDYF-----KKEAIQWAWEFST 156 (947)
Q Consensus 119 dnVG~t~rHhTfFEMlGn-~SfgdYf-----K~eai~~awe~lt 156 (947)
+ .||..=|.||-- .+|.||- -++-|.++|.-+.
T Consensus 288 ---~--~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 326 (529)
T 4ex5_A 288 ---S--PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDAL 326 (529)
T ss_dssp ---B--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C--CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 2 599999999865 5777873 3555555555443
No 82
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.28 E-value=51 Score=26.70 Aligned_cols=30 Identities=13% Similarity=-0.005 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHhhhcccCCCCCceEEEEeC
Q 002252 143 FKKEAIQWAWEFSTVEFGLPANRLWISVYE 172 (947)
Q Consensus 143 fK~eai~~awe~lt~~l~l~~~~l~vt~~~ 172 (947)
-|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 377777778888999999999999998764
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.21 E-value=2.9e+02 Score=23.99 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 774 YMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAV 816 (947)
Q Consensus 774 ~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~ 816 (947)
.++..-.-|+.+...|.+.|.+|..+..++++.+..|+.+...
T Consensus 29 sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 29 ALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556677777888899999999999999999998877543
No 84
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.13 E-value=1.6e+02 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 786 DEEVTTRVEGLLEDLRTARNEVANLRAKAAVY 817 (947)
Q Consensus 786 ~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~ 817 (947)
..+|...++.|..++..|++++..|+.++...
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888887776543
No 85
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=20.10 E-value=36 Score=39.59 Aligned_cols=96 Identities=17% Similarity=0.277 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcC--CCC-ccceeccccccc-cccccccCCC---------CCCCccccccccccCCc
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVP--EDP-TVLLTIAGMLQF-KPIFLGKVPR---------QVPRAATSQRCIRTNDV 118 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp--~d~-tllftnAGm~qf-k~~f~g~~~p---------~~~r~~~~QkCiR~nDl 118 (947)
.|-+.+-+||.++|...|..--|.| .-. .=.|+-- .+.| ++++|-+.+- ...|+=..-+|.|.-++
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~ 266 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 266 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCC
Confidence 3445566899999988886644444 111 0112110 0111 2234432211 25677788899999655
Q ss_pred cccCCCCCcccccccccC-cccCcccHHHHHHHHHHhh
Q 002252 119 ENVGRTSRHHTFFEMLGN-FSFGDYFKKEAIQWAWEFS 155 (947)
Q Consensus 119 dnVG~t~rHhTfFEMlGn-~SfgdYfK~eai~~awe~l 155 (947)
+ .||..=|.||.- .+|.|| ++.++.+-+++
T Consensus 267 ---~--~rH~pEFt~lE~e~af~d~--~dlm~l~E~li 297 (504)
T 1e1o_A 267 ---S--VRHNPEFTMMELYMAYADY--HDLIELTESLF 297 (504)
T ss_dssp ---C--C-CCSEEEEEEEEEESCCH--HHHHHHHHHHH
T ss_pred ---C--ccccCceeeeeeeecCCCH--HHHHHHHHHHH
Confidence 2 499999999874 677786 34444444443
No 86
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=20.07 E-value=37 Score=38.66 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcC---CCC-ccceeccccccc-cccccccCCC--------CCCCccccccccccCCc
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVP---EDP-TVLLTIAGMLQF-KPIFLGKVPR--------QVPRAATSQRCIRTNDV 118 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp---~d~-tllftnAGm~qf-k~~f~g~~~p--------~~~r~~~~QkCiR~nDl 118 (947)
.|-+.+-+||.++|...|..--|.+ ..- ..+-+|+ | ++++|-+.+. ...|+=..-+|.|.-|+
T Consensus 137 ~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~----~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~ 212 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDY----FGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKS 212 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEE----TTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSS
T ss_pred HHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeecc----CCcccccCCChHHHHHHhhhccCceEEEecceecCCC
Confidence 3445667899999988876433332 111 2222221 1 1233322110 24678888899998654
Q ss_pred cccCCCCCcccccccccC-cccCcc
Q 002252 119 ENVGRTSRHHTFFEMLGN-FSFGDY 142 (947)
Q Consensus 119 dnVG~t~rHhTfFEMlGn-~SfgdY 142 (947)
.|.||.+=|.||-- .+|.||
T Consensus 213 ----~t~RH~~EFT~lE~e~af~d~ 233 (435)
T 2xgt_A 213 ----RTRRHLAEYAHVEAECPFITL 233 (435)
T ss_dssp ----CCTTCCSEEEEEEEEEESCCH
T ss_pred ----CccccccceeEEEEEEecCCH
Confidence 36799988888874 677786
No 87
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=20.02 E-value=36 Score=39.45 Aligned_cols=98 Identities=11% Similarity=0.199 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhCCCeeeCCcCCcCC--CC-ccceeccccccc-cccccccCC---------CCCCCccccccccccCCc
Q 002252 52 SIRKRFLDFYASRGHKVLPSASLVPE--DP-TVLLTIAGMLQF-KPIFLGKVP---------RQVPRAATSQRCIRTNDV 118 (947)
Q Consensus 52 eiR~~Fl~fF~~~gH~~~~s~slvp~--d~-tllftnAGm~qf-k~~f~g~~~---------p~~~r~~~~QkCiR~nDl 118 (947)
.|-+.+-+||.++|...|..--+.+. -. .-.|+-- .+.| ++++|-+.+ ....|+=..-+|.|.-++
T Consensus 179 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~ 257 (493)
T 3a74_A 179 LIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGI 257 (493)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCC
Confidence 45566778999999988876444441 11 0112110 0011 123333221 135677788899999655
Q ss_pred cccCCCCCccccccccc-CcccCcccHHHHHHHHHHhhhc
Q 002252 119 ENVGRTSRHHTFFEMLG-NFSFGDYFKKEAIQWAWEFSTV 157 (947)
Q Consensus 119 dnVG~t~rHhTfFEMlG-n~SfgdYfK~eai~~awe~lt~ 157 (947)
+ .||..=|.||. -.+|.|| ++.++.+-+++..
T Consensus 258 ~-----~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 258 S-----TRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp B-----TTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred C-----cccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 2 49999999998 4677786 4455555555443
Done!