RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 002252
(947 letters)
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 811 bits (2098), Expect = 0.0
Identities = 192/760 (25%), Positives = 311/760 (40%), Gaps = 126/760 (16%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFL-GKVPRQVPRA 106
D +R+ +L+F+ RGH + +V + LTIA + F+P G P
Sbjct: 61 ELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPL 120
Query: 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVEFGL 161
SQ CIR +D+++VGRT RH T FEM+ + +F Y+K E + + E
Sbjct: 121 TISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN----- 175
Query: 162 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDF- 220
E+GV E I + W G G GPC E
Sbjct: 176 ----------------------ELGVKKEDIVY---KEEPWAGG--GNAGPCLEAIVGGL 208
Query: 221 --------HPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLER 272
+ + R+ + N + + + + E
Sbjct: 209 EVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEV 268
Query: 273 IARILQK--VPNNYETDLIFPIIKKASELANVSYAQSND--------------------- 309
+ I+ V N E + + I+ ++S+LA + +
Sbjct: 269 VDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELE 328
Query: 310 ---RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRG 366
+ + DH R I+++L DG+ PSN G GY+ R +IRR++R L +
Sbjct: 329 GIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELG----- 383
Query: 367 NLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLAD 426
L + E ++ + + + E L+ E+ R+ T+ +G +L+++++
Sbjct: 384 ----LDLYDLVEMHKKI---LGFEFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVER 436
Query: 427 ALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDM-KGFDIEMENQRRQ 485
+L D LYD+ G PVE+ +A E G V+M K E+ + +
Sbjct: 437 K----------KKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSK 486
Query: 486 SQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEV 545
++ L + P TE L YD + +V V
Sbjct: 487 AEKVQE-------KKITLQNEYPATEKLYYDDPTLLEFEA----------EVIGVEGDFV 529
Query: 546 LLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEV 605
+LNR+ FY ESGGQ D G+L G EV DV + V +H ++ EV
Sbjct: 530 ILNRSAFYPESGGQDNDVGYLIANGGK------FEVVDVLE-ADGVVLH--VVKGAKPEV 580
Query: 606 GREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPL 665
G +V+ ++D +R R HH+ATH+L +L+KV+G QAG+ F + R D R
Sbjct: 581 GTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRP 640
Query: 666 LDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVS 723
+ E++EIE L N I ++ + M +A+R ++ G G ++RVV+V G
Sbjct: 641 SEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQV-GDD 699
Query: 724 MELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEA 763
++ CGGTH +T EI KI+ + I G+ R E AGEA
Sbjct: 700 VQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 711 bits (1838), Expect = 0.0
Identities = 209/480 (43%), Positives = 298/480 (62%), Gaps = 27/480 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D +
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
+ R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 184 YEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 236
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 237 FEIDIIFPLIQFGEEVSGKKYGE-KFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 403
+RR++RRA+R G LGI+ FL + +++ +++ + + +K
Sbjct: 296 IRRILRRAMRFGYKLGIE--------NPFLYKGVDLVVDIMKEPYPELELSREFVKGIVK 347
Query: 404 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
EE RF++TL+ G + + +++ AL R+ LSG++ F YDT+GFPV++ E+A
Sbjct: 348 GEEKRFIKTLKAGMEYIQEVIQKALEEGRK-----TLSGKEVFTAYDTYGFPVDLIDEIA 402
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVD-DSADLAEKIPDTEFLGYDTLSAKA 522
E G+ +D++GF E+E QR +++ V + L E + F+G L
Sbjct: 403 REKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAALEHHH 462
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 658 bits (1701), Expect = 0.0
Identities = 218/457 (47%), Positives = 293/457 (64%), Gaps = 37/457 (8%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FLDF+ S+GH+V+ S+SLVP DPT+L T AGM QFK +FLG R RA
Sbjct: 3 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVE--FGL 161
TSQRC+R ND+ENVG T+RHHTFFEMLGNFSFGDYFK +AI +AW T E F L
Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122
Query: 162 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMG-------ADDNFWNSGATGPCGPCS 214
P RLW++VYE DDEA+EIW KEVG+P E I R+G A DNFW G TGPCGPC+
Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182
Query: 215 EIYYDFHPDRGCS--DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLER 272
EI+YD D R+IE +N+VFMQ+N++ DG++EPL + ++DT +GLER
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLER 242
Query: 273 IARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDG 332
IA +LQ V +NY+ DL +I+ +++ + +N +L++I DH+R+ +L++DG
Sbjct: 243 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATD-----LSNKSLRVIADHIRSCAFLIADG 297
Query: 333 VFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVK 392
V PSN RGYV+RR+IRRAVR G +LG K F + I++ D+K
Sbjct: 298 VMPSNENRGYVLRRIIRRAVRHGNMLGAK--------ETFFYKLVGPLIDVMGSAGEDLK 349
Query: 393 AREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTF 452
++ ++ + LK EE +F +TLERG LLD+ LA T L G+ AF LYDT+
Sbjct: 350 RQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDT--------LDGETAFRLYDTY 401
Query: 453 GFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAA 489
GFPV++T +V E + VD GF+ ME QRR+++ A
Sbjct: 402 GFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 542 bits (1395), Expect = 0.0
Identities = 188/779 (24%), Positives = 306/779 (39%), Gaps = 149/779 (19%)
Query: 49 SGDSIRKRFLDFYASRG---HKVLPSASLVPE-DPTVLLTIAGMLQFKP-IFLGKVPRQV 103
+ D +R+ FL F+ H + ++P VLL A ++ F+P + G+
Sbjct: 58 TLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA 117
Query: 104 PRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVE 158
SQ IR D++NVG T RH T FEM+ + +F Y+ E ++ A+EF T E
Sbjct: 118 NPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKE 177
Query: 159 FGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYY 218
+ + +N W G G GP E+ Y
Sbjct: 178 LXMXPEDITF-----------------------------KENPWAGG--GNAGPAFEVLY 206
Query: 219 DFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLE------------PLKQKNIDT 266
R +E LVFMQY + + + P++ +DT
Sbjct: 207 -----------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDT 249
Query: 267 GLGLERIARILQKVPNNYETDLIF----------------PIIKKASELANVSYAQSND- 309
G GLER+ + Q P Y+ L + I+ + S LA + +
Sbjct: 250 GYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGD 309
Query: 310 -----------------------RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRR 346
R + I DH +A+ ++L+DGV PSN+ GY+ R
Sbjct: 310 LRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARL 369
Query: 347 LIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREE 406
LIR+++R R LG++ L I I + E ILE ++ EE
Sbjct: 370 LIRKSIRHLRELGLE---------VPLSEIVALHIXELHKTFPEFXEMEDIILEMIELEE 420
Query: 407 LRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEH 466
+ +TL RG L+ + +A + + + + Y++ G EI E+AE+
Sbjct: 421 KXYAETLRRGSDLVRREIAKLKKKGIKE-----IPVEXLVTFYESHGLTPEIVXEIAEKE 475
Query: 467 GVSVDMK-GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVE 525
GV V++ F + + +++ +L + +PDT L Y+
Sbjct: 476 GVKVNIPDNFYSMVAKEAERTKEEKG----EELVDFELLKDLPDTRRLYYEDPFMXEFDA 531
Query: 526 SLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVK 585
+L + V+L+ T FY E GGQ D G L V V V +V+
Sbjct: 532 XVL----------RVIXDWVILDATAFYPEGGGQPYDTGVLIVNGRE------VXVTNVQ 575
Query: 586 KSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQ 645
+ G G V +D R + HHT TH+L AL +V+G+ Q
Sbjct: 576 XV--GXVIIHXVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQ 633
Query: 646 AGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAM 705
AGS + D R D + + + + EL EIE L N + + + + + A++ +
Sbjct: 634 AGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRL 693
Query: 706 F--GEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGE 762
+ G G ++RVV + ++ CGGTH+ +T + I+ + I G+ RI GE
Sbjct: 694 YQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 277 bits (710), Expect = 3e-87
Identities = 65/253 (25%), Positives = 98/253 (38%), Gaps = 42/253 (16%)
Query: 507 IPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFL 566
I T L Y+ K +V + D +LL++T FY GGQ D G +
Sbjct: 2 INMTRKLYYEDAYLKEAKG----------RVLEIRDNAILLDQTIFYPTGGGQPHDRGTI 51
Query: 567 YVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHT 626
VEV DV K H +VG EVE +D R + HT
Sbjct: 52 NG----------VEVLDVYKDEEGNVWHVV-KEPEKFKVGDEVELKIDWDYRYKLMRIHT 100
Query: 627 ATHLLQAALKKVIGQETSQ-AGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDAN 685
HLL+ L +V+G+ Q GS ++ ++ R+D + L E+I L N ++
Sbjct: 101 GLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNK-YKEQIISLFNKYV---- 155
Query: 686 LLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIIS 745
G + ++ E R ++ + CGGTHV + EI K +
Sbjct: 156 ------------DEGGEVKIWWEGD---RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLK 200
Query: 746 EQGIASGIRRIEA 758
I G +R+E
Sbjct: 201 RSSIGRGKQRLEM 213
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 267 bits (685), Expect = 3e-83
Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 20/240 (8%)
Query: 530 NGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLG 589
G+ + VLL++T F+ GGQ+GD G + ++V DV +
Sbjct: 17 KGEIIEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLI----------DGIKVLDVYEE-E 65
Query: 590 SVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSL 649
H E + + ++ +D + R H HLL + G T G
Sbjct: 66 GKVYHVL---EKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFH 120
Query: 650 VAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEK 709
+ + D L + + E E+ N I + +++ + + K+ K
Sbjct: 121 LGKEISTVDIV--GFLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVKTRR-ALPK 177
Query: 710 YGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYIN 769
E++R+VE+ G+ + C G H NT +++ KI + RIE VAG + +
Sbjct: 178 TDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKHK-NATRIEYVAGNRAVSEGH 236
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 187 bits (477), Expect = 3e-55
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 617 LRQRAKVHHTATHLLQAALKKVIGQETSQA-GSLVAFDRLRFDFNFHRPLLDTELEEIER 675
+ H+A H+++ A+ KV+G E + V ++ F R D E+ EIER
Sbjct: 1 MYSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIER 60
Query: 676 LINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQ---------VRVVEVPGVSMEL 726
L N + + ++ + ++A+ MFGE + ++VV + ++
Sbjct: 61 LANEKVKENAPIKIYELPREEAE-----KMFGEDMYDLFPVPEDVRILKVVVIEDWNVNA 115
Query: 727 CGGTHVNNTAEIRAFKIIS-EQGIASGIRRIEAVAGEA 763
C H T EI KI + G+ I E
Sbjct: 116 CNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIHFELLEL 153
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 157 bits (399), Expect = 2e-44
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 761 GEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKAS 820
GEA IE + + ++ S L+V+ ++ VE E+ + R E+ L++ A A
Sbjct: 2 GEAAIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWAD 61
Query: 821 TISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSL 880
+ +A + ++V+ E +D D +L+ AE L + A L + EGKV +
Sbjct: 62 ILMERAEEF---DSMKVVAEVVD-ADMQALQKLAERLAE---KGAVGCLMA-KGEGKVFV 113
Query: 881 IAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVS 940
+ Q A + + I ++ G GGGR + AQ ++ + L+ L
Sbjct: 114 VTFSGQKY-----DARELLREIGRVAKGSGGGRKDVAQGAVQQLLDREEMLDVIFRFLSE 168
Query: 941 VL 942
Sbjct: 169 HE 170
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA
synthetase, ATP-binding, cytoplasm, ligase,
nucleotide-binding; 1.85A {Aquifex aeolicus}
Length = 111
Score = 98.5 bits (246), Expect = 1e-24
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 833 NEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLG 892
+ + ++++ + L++ A+ L + V + S K++ + S+ I D
Sbjct: 7 GDFTLHYGVFEEVEPEELRNLADMLRQRTKK-DVVFIASR-KGDKINFVIGVSKEISD-K 63
Query: 893 IQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARA 936
+ A + I + K+ GGGGGR + AQ GG+ P+ A++ +
Sbjct: 64 VNAKEVIREVGKVLKGGGGGRADLAQGGGKAPDKFPEAVKLLKE 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 9e-11
Identities = 114/707 (16%), Positives = 187/707 (26%), Gaps = 288/707 (40%)
Query: 22 VPSARSTSASV----------QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPS 71
VP+A AS +P D D P++ + +FL + + V PS
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAAD---DEPTTPAELVGKFLGYVS---SLVEPS 75
Query: 72 ASLVPEDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFF 131
V + VL + +F+ +L ND+ H
Sbjct: 76 K--VGQFDQVLNLC--LTEFENCYL-----------------EGNDI---------HALA 105
Query: 132 EMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEH 191
L + L + I Y A + +
Sbjct: 106 AKL-------------------LQENDTTLVKTKELIKNY---ITARIMAKRPFDKKSNS 143
Query: 192 IKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKK 251
+ + G +++ F G G
Sbjct: 144 A--------LFRAVGEGN----AQLVAIF----G------G------------------- 162
Query: 252 DDGSLEPLKQKNIDTGLGLERIARILQKVPNNYET--DLIFPIIKKASELANVSYAQSND 309
Q N D E L+ + Y+T L+ +IK ++E + + D
Sbjct: 163 ---------QGNTDDYFE-E-----LRDL---YQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 310 RTNL---NLKIIG-----DHLRAIVYLLSDGV-FPSNIGRGYVVRRLIRRA--VRTGRLL 358
+ L I+ + YLLS + P IG +I+ A V T +LL
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL-IG-------VIQLAHYVVTAKLL 256
Query: 359 GIK-GDGRGNLEGA---------------------FLPSIAEKAIELSTHIDSDVKAREQ 396
G G+ R L+GA F KAI + I R
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF-VSVRKAITVLFFIG----VRCY 311
Query: 397 RILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPV 456
+LE E + ML+ +S
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLS--------------ISN-------------- 343
Query: 457 EITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYD 516
+T+E +++ + N A V++S+ + A
Sbjct: 344 -LTQEQVQDY----------VNKTN---SHLPAGKQVEISLVNGAK-------------- 375
Query: 517 TLSAKAIVESLLVNGKPV-----------IKVSKGSDVEVLLNRTPFYAESGGQI-GDYG 564
+V V+G P K G D +R PF S ++
Sbjct: 376 -----NLV----VSGPPQSLYGLNLTLRKAKAPSGLDQ----SRIPF---SERKLKFSNR 419
Query: 565 FL---------YVTQGTNQQTAVVEVKDVK---KSLG-SVF-VHKGT-IREGVLEVGREV 609
FL + ++ + +V K + V+ G+ +R +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI---S 476
Query: 610 EAIVDPKLRQR----AKVHHTATHLLQAALKKVIGQ-ETSQAGSLVA 651
E IVD +R ATH+L G S G L
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHIL------DFGPGGASGLGVLTH 517
Score = 61.6 bits (149), Expect = 1e-09
Identities = 114/621 (18%), Positives = 194/621 (31%), Gaps = 201/621 (32%)
Query: 227 SDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYET 286
+ +L +F+ + +EP K D ++L +E
Sbjct: 56 TPAELV--GKFLGYV-----------SSLVEPSKVGQFD---------QVLNLCLTEFEN 93
Query: 287 DLIFPIIKKASE---LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+ + ++ LA Q ND T + K + ++ Y+ + + +
Sbjct: 94 CYL-----EGNDIHALA-AKLLQENDTTLVKTKEL---IKN--YITARIMAKRPFDKKS- 141
Query: 344 VRRLIRRAVRTG--RLLGIKGDGRGNLEGAFLPSIAEKAIEL------STHIDSDVKARE 395
+ RAV G +L+ I G G+GN + F E EL + D+
Sbjct: 142 -NSALFRAVGEGNAQLVAIFG-GQGNTDDYF-----E---ELRDLYQTYHVLVGDLIKFS 191
Query: 396 QRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFP 455
L EL R L + +G L+ + + L + P +LL P
Sbjct: 192 AETLSELIRTTLDAEKVFTQG---LN--ILEWL---ENPSNTP----DKDYLLSIPISCP 239
Query: 456 VEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDS--ADLAEKIPDTEFL 513
+ I GV Q AH V + +L +
Sbjct: 240 L-I--------GVI-----------------QLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 514 GYDTLSAKAI-----VESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYV 568
++A AI ES V+ + I V F+ IG
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVL-------------FF------IG-----VR 309
Query: 569 TQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGV----LEV-G---REVEAIVD---PKL 617
T++ ++ SL EGV L + +V+ V+ L
Sbjct: 310 CYEAYPNTSL-PPSILEDSL--------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 618 RQRAKVH----HTATHL-----------LQAALKKV---IGQETSQAGSLVAFD--RLRF 657
+V + A +L L L+K G + S+ + F +L+F
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR----IPFSERKLKF 416
Query: 658 D--FN-----FHRPLLDTELEEI-ERLINGWIG-DANLLQTKVMALDDAK--RAGAIAMF 706
F FH LL + I + L+ + +A +Q V D R +
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS---- 472
Query: 707 GEKYGEQVR-VVEVPGVSMELC---GGTHV-----NNTAEIRAFKIISEQGIASGIRRIE 757
G V ++ +P V E TH+ + + ++ G +G+R I
Sbjct: 473 GSISERIVDCIIRLP-VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG--TGVRVI- 528
Query: 758 AVAGEAFIEYINARDSY-MKH 777
VAG ++ IN D Y K
Sbjct: 529 -VAGT--LD-INPDDDYGFKQ 545
Score = 55.8 bits (134), Expect = 6e-08
Identities = 57/277 (20%), Positives = 91/277 (32%), Gaps = 106/277 (38%)
Query: 442 GQDAFLLYDTFGFPVEITKEV---AEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVD 498
G D LY T + ++V A+ H D GF I +N V L++
Sbjct: 1632 GMD---LYKTS----KAAQDVWNRADNH--FKDTYGFSI-------LDIVINNPVNLTIH 1675
Query: 499 DSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGG 558
+ ++I + Y + + IV+ L + + K ++ F
Sbjct: 1676 FGGEKGKRIRE----NYSAMIFETIVDGKLKT-EKIFK-----EINEHSTSYTFR----- 1720
Query: 559 QIGDYGFLYVTQGTNQQTA--VVEV---KDVKK-------------SLG---------SV 591
+ G L TQ Q A ++E +D+K SLG V
Sbjct: 1721 --SEKGLLSATQ--FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 592 F--------VHK-G-TIREGV--LEVGREVEAI--VDPKLRQRAKVHHTATHLLQAALKK 637
V G T++ V E+GR + ++P +V A Q AL+
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-----GRV---AASFSQEALQY 1828
Query: 638 V---IGQET-------------SQ---AGSLVAFDRL 655
V +G+ T Q AG L A D +
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV 1865
Score = 55.4 bits (133), Expect = 9e-08
Identities = 101/649 (15%), Positives = 181/649 (27%), Gaps = 238/649 (36%)
Query: 366 GNLEGAFL-PSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQML 424
G+LE L P+ ++ I +L+ + F + L
Sbjct: 14 GSLEHVLLVPT--------ASFF----------IASQLQEQ---FNKILPEP-------- 44
Query: 425 ADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVD------------- 471
+ + E + L G+ FL G+ ++ V D
Sbjct: 45 TEGFAADDEPTTPAELVGK--FL-----GY---VSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 472 -MKGFDIEMENQRRQSQAAHN-AVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLV 529
++G DI H A KL ++ L + + + K + + ++
Sbjct: 95 YLEGNDI------------HALAAKLLQENDTTLVKT--------KELI--KNYITARIM 132
Query: 530 NGKPVIKVSKGSDVEVLL-----NRTPFYAESGGQ--IGDYGF-----LYVTQGTNQQTA 577
+P K S + L A GGQ DY F LY T
Sbjct: 133 AKRPFDKKSNSA----LFRAVGEGNAQLVAIFGGQGNTDDY-FEELRDLYQTYHVLVGDL 187
Query: 578 VVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALK- 636
+ + L + + L + +E + +P +LL +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNI---LEWLENPSNT------PDKDYLLSIPISC 238
Query: 637 KVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDD 696
+IG Q V +L L E+ + G G + L V A+
Sbjct: 239 PLIG--VIQLAHYVVTAKL----------LGFTPGELRSYLKGATGHSQGL---VTAV-- 281
Query: 697 AKRAGAIAM------FGEKYGEQVRVV---------EVPGVSMELCGGTHVNNTAEIRAF 741
AIA F + + V+ P S+ I
Sbjct: 282 -----AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP----------PSILED 326
Query: 742 KIISEQGIAS---GIRRIEAVAGEAFIEY---------------INARDSY--------M 775
+ + +G+ S I + + ++ +N + +
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL 386
Query: 776 KHLCSTL-KVK-----DE----------EVTTR----------------VEGLLEDLRTA 803
L TL K K D+ + + R + + +DL
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL--V 444
Query: 804 RNEVANLRAKA---AVYKASTISSKAFTVGTSNEIRVLVESMDDMDAD---SLKSAAEYL 857
+N V+ AK VY T V + + +V+ + + + + A ++
Sbjct: 445 KNNVS-FNAKDIQIPVY--DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 858 VDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVD-LG---IQAGKF-IGP 901
+D G P G S + + D G I AG I P
Sbjct: 502 LD---------FG--P--GGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Score = 53.1 bits (127), Expect = 4e-07
Identities = 103/604 (17%), Positives = 171/604 (28%), Gaps = 243/604 (40%)
Query: 426 DALSRTR----ESGS------VPRLSGQDAFLLYDTFG--FPVEITKEVAEEHGVSVDMK 473
DA S TR GS VP S A L + F P E T+ A +
Sbjct: 2 DAYS-TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP-EPTEGFAAD-------- 51
Query: 474 GFDIEMENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKP 533
D+ AE + +FLGY V SL+ K
Sbjct: 52 ------------------------DEPTTPAELV--GKFLGY--------VSSLVEPSKV 77
Query: 534 VIKVSKGSDVEVL---LNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEV-KDVKKSLG 589
G +VL L F E+ +L +G + ++ ++ +L
Sbjct: 78 ------GQFDQVLNLCLTE--F--ENC-------YL---EGNDIHALAAKLLQENDTTLV 117
Query: 590 SVFVHKGTIR---EGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALK---KVI---- 639
K I+ + R + K ++A L +A + +++
Sbjct: 118 KT---KELIKNYITARIMAKRPFD-----------KKSNSA--LFRAVGEGNAQLVAIFG 161
Query: 640 GQETSQAG-SLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAK 698
GQ G + F+ LR + + L+ ++ A L + DA+
Sbjct: 162 GQ-----GNTDDYFEELRDLYQTYHVLVGDLIKFS----------AETLSELIRTTLDAE 206
Query: 699 RAGAIAMFGEKYGEQVRVVE-------VPGVSMELCGGTHVNNTAEIRAFKIISEQGIAS 751
+ + + + ++E P L + I + +I G+
Sbjct: 207 KV---------FTQGLNILEWLENPSNTPDKDY-LL-------SIPI-SCPLI---GVIQ 245
Query: 752 GIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLL---EDLRTARNEVA 808
Y+ L E+ + ++G + L TA
Sbjct: 246 ------------LAHYVVT--------AKLLGFTPGELRSYLKGATGHSQGLVTA----- 280
Query: 809 NLRAKAAVYKASTISSKAFTVGTSNEIRVL----VESMDDMDADSLKSAAEYLVDTLQD- 863
A+ A T S ++F V I VL V + SL L D+L++
Sbjct: 281 -----VAI--AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL--PPSILEDSLENN 331
Query: 864 -----PAAVVLG---------------SCPDEGKV--SLIAAFSQGIVDLGIQAGKFIGP 901
P + P +V SL+ +V GP
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---------GP 382
Query: 902 IAKLCGGGGGGRPNFAQAG---------GRKPEN----LSIA-------LEKARADLVSV 941
L G R A +G RK + L +A L A +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 942 LSEK 945
L +
Sbjct: 443 LVKN 446
Score = 50.8 bits (121), Expect = 2e-06
Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 90/255 (35%)
Query: 1 MAHYYPSI----LPCGHFL--FKGAT----GVPSARSTSASVQPLTEEVEDKSQDFPSSG 50
+AHY + G KGAT G+ +A + + + D + F
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET---------DSWESF---F 293
Query: 51 DSIRK--RFLDFY-ASRGHKVLPSASLVP---ED--------PTVLLTIAGMLQFKPI-- 94
S+RK L F+ R ++ P+ SL P ED P+ +L+I+ + Q + +
Sbjct: 294 VSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQD 351
Query: 95 FLGKVPRQVPRAATSQRCI-RTNDVENVGRTSRHHTFFEMLGN----FSFGDYFKKEAI- 148
++ K +P Q I N G + + G + +K
Sbjct: 352 YVNKTNSHLPAG--KQVEISLVN-----GAKN-----LVVSGPPQSLYGLNLTLRKAKAP 399
Query: 149 ----QWAWEFS------TVEFGLPANRLWISV-----Y---------EDD-DEAFEIWNK 183
Q FS + F LP ++ +D K
Sbjct: 400 SGLDQSRIPFSERKLKFSNRF-LP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 184 EVGVPVEHIKRMGAD 198
++ +PV G+D
Sbjct: 454 DIQIPVYDT-FDGSD 467
Score = 40.8 bits (95), Expect = 0.003
Identities = 43/261 (16%), Positives = 78/261 (29%), Gaps = 85/261 (32%)
Query: 171 YEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS-G-------ATGPCGPCSEIYYDFHP 222
Y+ A ++WN+ AD++F ++ G P + F
Sbjct: 1636 YKTSKAAQDVWNR-------------ADNHFKDTYGFSILDIVINNP----VNLTIHFGG 1678
Query: 223 DRGCSDVDLGDDTRFI-EFYNLVFMQYNKKDDGSLEPLKQ-KNIDTGLGLERIARILQKV 280
++G + I E Y+ M + DG L+ K K I+ E +
Sbjct: 1679 EKG----------KRIRENYS--AMIFETIVDGKLKTEKIFKEIN-----EHSTSYTFRS 1721
Query: 281 PNN--YETDLIF--PIIKKASELANVSYAQSND---RTNLNLKII--GDH-------LRA 324
T F P + + A D + + G H L +
Sbjct: 1722 EKGLLSATQ--FTQPAL-----TL-MEKAAFEDLKSKGLIPADATFAG-HSLGEYAALAS 1772
Query: 325 I--VYLLSDGVFPSNIGRGYVVR---RLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEK 379
+ V + V VV ++ AV L G S +++
Sbjct: 1773 LADVMSIESLV--------EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 380 AIELSTHIDSDVKAREQRILE 400
A++ ++ V R ++E
Sbjct: 1825 ALQ---YVVERVGKRTGWLVE 1842
Score = 39.6 bits (92), Expect = 0.006
Identities = 52/294 (17%), Positives = 80/294 (27%), Gaps = 93/294 (31%)
Query: 339 GRG---Y----VVRRLIRRA-VRTGRLLG--IKGDGRGN-------LEGAFLPSIAEKAI 381
G G Y + + RA G I N G I E
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 382 ELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQ-------MLAD--ALSRT- 431
+ D K + ++I +E+ E T + LL + A
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEIN-EHSTSY-TFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 432 RESGSVPRLSGQDAFLLYDTF-GFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQA-A 489
+ G +P DA F G H S+ G E + A A
Sbjct: 1748 KSKGLIP----ADAT-----FAG------------H--SL---G-----EY----A-ALA 1771
Query: 490 HNAVKLSVDDSADL--------AEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGS 541
A +S++ ++ +P E LG AI + +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDE-LGRSNYGMIAINPGRVAASFSQEALQYV- 1829
Query: 542 DVEVLLNRTPFYAE------SGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLG 589
VE + RT + E Q YV G + A+ V +V +
Sbjct: 1830 -VERVGKRTGWLVEIVNYNVENQQ-------YVAAGDLR--ALDTVTNVLNFIK 1873
Score = 36.6 bits (84), Expect = 0.045
Identities = 44/311 (14%), Positives = 83/311 (26%), Gaps = 108/311 (34%)
Query: 640 GQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLL-QTKVMALDDAK 698
G+ + S + F+ + + E + + LL T+
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQF------- 1731
Query: 699 RAGA-IAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIE 757
A+ E AF+ + +G+ I
Sbjct: 1732 ---TQPALT----------------------------LMEKAAFEDLKSKGL---IPADA 1757
Query: 758 AVAGEAFI----EYINARDSYMKHLCST---LKVKD--EEVTTRVEGLLEDLRTARNEVA 808
AG EY A L S + ++ E V R G+ + R+E+
Sbjct: 1758 TFAG----HSLGEY-AA-------LASLADVMSIESLVEVVFYR--GMTMQVAVPRDELG 1803
Query: 809 NLR-AKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQDPAAV 867
A+ +S + ++ +VE + L Y V+ Q
Sbjct: 1804 RSNYGMIAINPGRVAAS-----FSQEALQYVVERVGK-RTGWLVEIVNYNVENQQ----Y 1853
Query: 868 VLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENL 927
V G + + + + + +Q I I +L
Sbjct: 1854 VAA-----GDLRALDTVTNVLNFIKLQK---I-DIIEL--------------------QK 1884
Query: 928 SIALEKARADL 938
S++LE+ L
Sbjct: 1885 SLSLEEVEGHL 1895
Score = 34.6 bits (79), Expect = 0.18
Identities = 72/418 (17%), Positives = 112/418 (26%), Gaps = 160/418 (38%)
Query: 32 VQPLTEEVEDKSQDFPSSGDSIRKRF---LDFYASRGHKVLPSASLVPEDPTVLLTIA-- 86
V L + + + + K F L+ + L + S P D LL+I
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-----LEWLENPSNTP-DKDYLLSIPIS 237
Query: 87 ----GMLQFKPIF-----LGKVP---RQVPRAATSQRCIRTNDVENVGRTSRHHTFFEML 134
G++Q LG P R + AT + + V T+
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGL--V--TA---VAIAET 286
Query: 135 GNF-SFGDYFKKEAIQWAWEFSTVEFGL------PANRLWISVYEDDDEAFEIWNKEVGV 187
++ SF +K AI F G+ P L S+ ED E E GV
Sbjct: 287 DSWESFFVSVRK-AITVL--FFI---GVRCYEAYPNTSLPPSILEDSLENNE------GV 334
Query: 188 PVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQ 247
P P I + + ++ N
Sbjct: 335 P----------------------SPMLSI-------SNLTQEQV---QDYVNKTN----- 357
Query: 248 YNKKDDGSLEPLKQ-----KN-----IDTG--LGLERIARILQKVPNNYETD-------- 287
L KQ N + +G L + L+K D
Sbjct: 358 ------SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 288 --LIF-----PIIKKA---SE-LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPS 336
L F P+ + S L S + D N+ ++ VY DG S
Sbjct: 412 RKLKFSNRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG---S 466
Query: 337 NI--GRGYVVRRLIRRAVR--------------------TGRLLGIKG------DGRG 366
++ G + R++ +R G G+ DG G
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG 524
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 2e-10
Identities = 97/671 (14%), Positives = 180/671 (26%), Gaps = 199/671 (29%)
Query: 127 HHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVG 186
HH FE Y K+ + F A + D I +KE
Sbjct: 5 HHMDFET----GEHQYQYKDILS--------VF-EDAFVDNFDCKDVQDMPKSILSKEE- 50
Query: 187 VPVEHIKRMGADDN-----FW---NSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFI 238
++HI + FW + E+ F + L + +F+
Sbjct: 51 --IDHIIMSKDAVSGTLRLFWTLLSKQ--------EEMVQKFVEEV------LRINYKFL 94
Query: 239 EFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYE--TDLIFPIIKKA 296
+ P+K + + ++ N+ + ++
Sbjct: 95 -----------------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 297 SELANVSYAQSNDRTNLNLKIIG-----------DHLRA--IVYLLSDGVFPSNIGRGYV 343
+L A R N+ I G D + + + +F N+
Sbjct: 138 LKLRQ---ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 403
++ + + R + I+L H ++A +R+L+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSD---------HSSNIKLRIH---SIQAELRRLLKSKP 242
Query: 404 REE----LRFVQTLERGE------KLL----DQMLADALS--RTRESGSVPRLSG----- 442
E L VQ + K+L + + D LS T
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 443 -QDAFLLY---DTFGFPVEITKE-------VAEEHGVSVDMKGFDIEMEN-QRRQSQAAH 490
+ L Y P E+ +AE ++ +N +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES------IRDGLATWDNWKHVNCDKLT 356
Query: 491 NAVKLSVD--DSADLAE------------KIPDTEFLGYDTLS-----AKAIVESLLVNG 531
++ S++ + A+ + IP LS ++VN
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP------TILLSLIWFDVIKSDVMVVVN- 409
Query: 532 KPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSV 591
K+ K S L+ + P I +Y+ E+K K
Sbjct: 410 ----KLHKYS----LVEKQPKE----STISIPS-IYL-----------ELK--VKLENEY 443
Query: 592 FVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVA 651
+H+ + + + + ++ P L Q H HL +
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNI----------EHPERMTL 492
Query: 652 FDRLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQT-----KVMALDDAK---RAGAI 703
F + DF F L+ ++ N N LQ + +D K AI
Sbjct: 493 FRMVFLDFRF----LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 704 AMFGEKYGEQV 714
F K E +
Sbjct: 549 LDFLPKIEENL 559
Score = 59.1 bits (142), Expect = 6e-09
Identities = 57/374 (15%), Positives = 114/374 (30%), Gaps = 119/374 (31%)
Query: 580 EVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIV---DPKLRQRAKVHHTATHLLQAALK 636
+ KDV+ S+ + E++ I+ D L L
Sbjct: 34 DCKDVQDMPKSILSKE------------EIDHIIMSKDAVSGTL--------RLFWTLLS 73
Query: 637 KVIGQETSQAGSLVAF--DRLRFDFNF---------HRPLLDTEL--EEIERLING--WI 681
K +E Q F + LR ++ F +P + T + E+ +RL N
Sbjct: 74 K--QEEMVQK-----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 682 GDANL--------LQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVN 733
N+ L+ ++ L AK + G G+ ++V
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDV-------------- 170
Query: 734 NTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINAR-----DSYMKHLCSTLKVKDEE 788
++K+ + + F ++N + ++ ++ L L D
Sbjct: 171 ----CLSYKVQCKMD------------FKIF--WLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 789 VTTRVEGL------LEDLRTA-RNEVANLRAKAA------VYKASTISSKAFTVGTSNEI 835
T+R + + ++ R + + + V A AF +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSC---- 266
Query: 836 RVLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAF-SQGIVDLGIQ 894
++L+ + D L +A + +L + PDE K SL+ + DL +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHI-SLDH---HSMTLTPDEVK-SLLLKYLDCRPQDLPRE 321
Query: 895 AGKFIGPIA-KLCG 907
P +
Sbjct: 322 VLT-TNPRRLSIIA 334
Score = 59.1 bits (142), Expect = 6e-09
Identities = 72/463 (15%), Positives = 147/463 (31%), Gaps = 120/463 (25%)
Query: 443 QDAFL----LYDTFGFPVEI-TKE-----VAEEHGVSVDMKGFDIEMENQRRQSQAAHNA 492
+DAF+ D P I +KE + + VS ++ F + Q
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-------EM 78
Query: 493 VKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESL-----------LVNGKPVIK---VS 538
V+ V++ + +FL + + S+ L N V VS
Sbjct: 79 VQKFVEEVLR-----INYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 539 KGSDVEVLLNRTPFY-AESGGQIGDYGFLYVTQGTNQQTAVVEV---KDVKKSL-GSVF- 592
+ L R + G L G+ + ++V V+ + +F
Sbjct: 133 RLQPYLKL--RQALLELRPAKNVLIDGVL----GSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 593 VHKGTIR--EGVLEVGREVEAIVDPKLRQRAKVHHTA---THLLQAALKKVIGQETSQAG 647
++ E VLE+ +++ +DP R+ H +QA L++++ +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-KSKPYEN 245
Query: 648 SLVAFDRLR----FD-FNFH-RPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAG 701
L+ ++ ++ FN + LL T +++ ++ T ++LD
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-------ATTTHISLDHHSMT- 297
Query: 702 AIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAG 761
L + R + E + + R ++
Sbjct: 298 ----LTPDE------------VKSLLL-----KYLDCRPQDLPRE--VLTTNPRRLSIIA 334
Query: 762 EAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKAST 821
E+ + + D++ KH V +++TT +E L L E A R ++ +
Sbjct: 335 ESIRDGLATWDNW-KH------VNCDKLTTIIESSLNVL-----EPAEYR---KMFDRLS 379
Query: 822 ISSKAFTVGTSNEIRVLV---------ESMDDMDADSLKSAAE 855
+ F +L + M ++ S E
Sbjct: 380 V----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 58.7 bits (141), Expect = 9e-09
Identities = 84/584 (14%), Positives = 165/584 (28%), Gaps = 156/584 (26%)
Query: 33 QP--LTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLP-SASLVPEDPTVLLTIAGML 89
QP +T ++ + K + SR L +L+ P + I G+L
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 90 QFKPIFLGKVPRQVPRAATSQRCIRTNDVE----------NVGRTSRHHTFFEMLGNFSF 139
GK + V+ N+ + T EML +
Sbjct: 160 GS-----GK---TWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 140 ---GDYFKKEAIQWAWEFSTVEFGLPANRLWIS-VYED-----DDEAFEIWNKEVGVPVE 190
++ + + RL S YE+ + + N +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----VQNAKA----- 258
Query: 191 HIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNK 250
WN+ F + C + TRF + + +
Sbjct: 259 -----------WNA---------------F--NLSCKILLT---TRFKQVTDFLSAATTT 287
Query: 251 KDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDL------IFP-----IIKKASEL 299
+ + L + + +L K + DL P I + +
Sbjct: 288 H-------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 300 ANVS--YAQSN-DRTNLNLKIIGDHL-----RAIVYLLSDGVFPSNIGRGYVVRRLIRRA 351
+ N D+ ++ + L R + LS VFP + I
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSA--------HI--- 387
Query: 352 VRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRI--LEELKREELRF 409
LL + ++ + + + K + S ++ K I + + +L
Sbjct: 388 --PTILLSLIW---FDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLEN 441
Query: 410 VQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGF---PVEITKEVAEEH 466
L R ++D + +T +S + F + G +E + +
Sbjct: 442 EYALHR--SIVDH---YNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFR 494
Query: 467 GVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADL-------AEKIPDTEFLGYDTLS 519
V +D + F +E + R A NA ++ L + P E L
Sbjct: 495 MVFLDFR-F---LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--- 547
Query: 520 AKAIVESLLVNGKPVIKVSKGSD-VEVLLN--RTPFYAESGGQI 560
+ L + + SK +D + + L + E+ Q+
Sbjct: 548 ----ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 41.0 bits (97), Expect = 0.002
Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 32/139 (23%)
Query: 625 HTATHLLQAALKKV-------IGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLI 677
H+ HL+ A+K++ +G +DF+ + + + E+IE+ +
Sbjct: 75 HSTAHLMAHAIKRLYGNVKFGVGPVIE--------GGFYYDFDIDQNISSDDFEQIEKTM 126
Query: 678 NGWIGDANLLQTKVMALDDAKRAGAIAMF-GEKY----------GEQVRVVEVPGVSMEL 726
+ + ++ KV++ R A +F ++Y E V + G +L
Sbjct: 127 KQIVNENMKIERKVVS-----RDEAKELFSNDEYKLELIDAIPEDENVTLYSQ-GDFTDL 180
Query: 727 CGGTHVNNTAEIRAFKIIS 745
C G HV +TA+I+ FK++S
Sbjct: 181 CRGVHVPSTAKIKEFKLLS 199
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.005
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 14/44 (31%)
Query: 482 QRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVE 525
+++ + ++KL DDSA P L+ KA +E
Sbjct: 18 EKQALKKLQASLKLYADDSA------P--------ALAIKATME 47
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 37.9 bits (89), Expect = 0.017
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 39/144 (27%)
Query: 625 HTATHLLQAALKK-------VIGQETSQAGSLVAFDRLRF--DFNFHRPLLDTELEEIER 675
H+ HLL A+K+ IG F D + R L ++E +E+
Sbjct: 73 HSCAHLLGHAIKQLWPHTKMAIGPVIDNG----------FYYDVDLDRTLTQEDVEALEK 122
Query: 676 LINGWIGDANLLQTKVMALDDAKRAGAIAMF---GEKY-----------GEQVRVVEVPG 721
++ + K ++ A F GE Y ++ +
Sbjct: 123 RMHELAEKNYDVIKKKVS-----WHEARETFANRGESYKVSILDENIAHDDKPGLYFH-E 176
Query: 722 VSMELCGGTHVNNTAEIRAFKIIS 745
+++C G HV N FK++
Sbjct: 177 EYVDMCRGPHVPNMRFCHHFKLMK 200
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 35.2 bits (82), Expect = 0.071
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 658 DFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF---GEKYGEQV 714
D + R L ++E +E+ ++ + K + A F GE Y +
Sbjct: 105 DVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKV-----SWHEARETFANRGESYKVSI 159
Query: 715 RVVEVPG---VSM-------ELCGGTHVNNTAEIRAFKIIS 745
+ + ++C G HV N FK++
Sbjct: 160 LDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMK 200
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
transferase; 2.00A {Saccharomyces cerevisiae} PDB:
2if8_A*
Length = 363
Score = 34.1 bits (77), Expect = 0.19
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 17/116 (14%)
Query: 170 VYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDV 229
+YE D E +E+ N + + DD+ + +
Sbjct: 262 IYEGDPERWELLNDVDKLMRDDFIDDDDDDD------DNDDDDDDDAEGSSEGPKDKKTT 315
Query: 230 DLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYE 285
I+F + D+ + G+E + I K ++
Sbjct: 316 GSLSSMSLIDFAHSEITPGKGYDENVI-----------EGVETLLDIFMKFLEHHH 360
>2qh8_A Uncharacterized protein; conserved domain protein, structural
genomics, PSI-2, MCSG, BIG_563.1, protein structure
initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar
eltor str} PDB: 3lkv_A*
Length = 302
Score = 33.0 bits (75), Expect = 0.45
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 805 NEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESM-DDMDA------DSLKSAAEYL 857
N V+ + I T S +++ +++ + D +++ SA E +
Sbjct: 153 NAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGM 212
Query: 858 VDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAK 904
+ V G+ + IA+ +G+Q ++ I +
Sbjct: 213 IVAANQAKTPVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAILE 259
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 31.9 bits (72), Expect = 1.1
Identities = 22/179 (12%), Positives = 61/179 (34%), Gaps = 25/179 (13%)
Query: 658 DFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVV 717
N +L+++ + + L+++ V D +G+ + V
Sbjct: 366 KLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNV 425
Query: 718 EVPGVSME----LCGGTHVN-------------------NTAEIRAFKIISEQGIASGIR 754
++ E L G + +N + +G+A+GIR
Sbjct: 426 KINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485
Query: 755 RIEAVAGEAF--IEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLR 811
I+A+ + +E ++ + + ++ +++ + ++N+V ++R
Sbjct: 486 YIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIMSKNKVIDVR 544
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG,
structural genomics center for structural genomics; HET:
MSE TRP; 1.35A {Streptococcus pneumoniae}
Length = 295
Score = 31.5 bits (71), Expect = 1.1
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 805 NEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESM-DDMDA------DSLKSAAEYL 857
N + A + + ++ + F V ++NEI V M +DA +++ S +
Sbjct: 146 NSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMTSKVDAIWVPIDNTIASGFPTV 205
Query: 858 VDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAK 904
V + Q + S +V +A+ DLG+ GK I + K
Sbjct: 206 VSSNQSSKKPIYPSATAMVEVGGLASVVIDQHDLGVATGKMIVQVLK 252
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 31.5 bits (71), Expect = 1.5
Identities = 22/179 (12%), Positives = 61/179 (34%), Gaps = 25/179 (13%)
Query: 658 DFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVV 717
N +L+++ + + L+++ V D +G+ + V
Sbjct: 366 KLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNV 425
Query: 718 EVPGVSME----LCGGTHVN-------------------NTAEIRAFKIISEQGIASGIR 754
++ E L G + +N + +G+A+GIR
Sbjct: 426 KINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485
Query: 755 RIEAVAGEAF--IEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLR 811
I+A+ + +E ++ + + ++ +++ + ++N+V ++R
Sbjct: 486 YIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIMSKNKVIDVR 544
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier
protein, solution STR antibiotic biosynthesis; NMR
{Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
2kgd_A* 2kge_A*
Length = 86
Score = 29.0 bits (65), Expect = 1.8
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 497 VDDSADLAEKIPDTEF--LGYDTLSAKAIVESL 527
D DL+ D F +GYD+L+ L
Sbjct: 20 ETDGTDLSGDFLDLRFEDIGYDSLALMETAARL 52
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 31.0 bits (70), Expect = 1.9
Identities = 26/156 (16%), Positives = 60/156 (38%), Gaps = 13/156 (8%)
Query: 669 ELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRV-VEVPGVSMELC 727
+++E+ + G ++++T + +A GE G VRV V + +LC
Sbjct: 367 KVKEVPQTAVGLKIAQSIVETAEKHASEPSPCSFLAFEGEMMGRNVRVYVVEEEENTKLC 426
Query: 728 GGTHVNNTA----------EIRAFKIISEQGIASGIRRIEAVAGEAF--IEYINARDSYM 775
G + N + + ++ E+G+ +GIR I+ A A +E R+
Sbjct: 427 GPAYANEVVVYKGDIYGIPKTKKWRSFFEEGVPTGIRYIDGFAYYAARKVEEAAMREQEE 486
Query: 776 KHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLR 811
+ + + ++ + + + ++R
Sbjct: 487 VKVKARIVENLSDINLYIHENVRRYILWKKGKIDVR 522
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 30.7 bits (69), Expect = 2.8
Identities = 22/179 (12%), Positives = 61/179 (34%), Gaps = 25/179 (13%)
Query: 658 DFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVV 717
N +L+++ + + L+++ V D +G+ + V
Sbjct: 366 KLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNV 425
Query: 718 EVPGVSME----LCGGTHVN-------------------NTAEIRAFKIISEQGIASGIR 754
++ E L G + +N + +G+A+GIR
Sbjct: 426 KINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485
Query: 755 RIEAVAGEAF--IEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLR 811
I+A+ + +E ++ + + ++ +++ + ++N+V ++R
Sbjct: 486 YIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIMSKNKVIDVR 544
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 30.3 bits (68), Expect = 4.0
Identities = 22/179 (12%), Positives = 61/179 (34%), Gaps = 25/179 (13%)
Query: 658 DFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVV 717
N +L+++ + + L+++ V D +G+ + V
Sbjct: 366 KLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNKDLKSPCELAIEKTFSFGKTKKNV 425
Query: 718 EVPGVSME----LCGGTHVN-------------------NTAEIRAFKIISEQGIASGIR 754
++ E L G + +N + +G+A+GIR
Sbjct: 426 KINIFEKEEGKNLLGPSILNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485
Query: 755 RIEAVAGEAF--IEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLR 811
I+A+ + +E ++ + + ++ +++ + ++N+V ++R
Sbjct: 486 YIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIMSKNKVIDVR 544
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution
structure, dynamics, ACP, biosynthetic protein; NMR
{Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 27.9 bits (62), Expect = 5.0
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 497 VDDSADLAEKIPDTEF--LGYDTLSAKAIVESL 527
++S DL + D F LGYD+L+ V +
Sbjct: 19 EEESIDLGGDVEDVAFDALGYDSLALLNTVGRI 51
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 29.8 bits (66), Expect = 5.2
Identities = 23/147 (15%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 798 EDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYL 857
R + + A+ A S K T + ++ M+ L S
Sbjct: 335 HGNRGKLRWIPDTSIVEALDNAFYKSFK-LVEPTGKRFLLAIDVSASMNQRVLGSIL--- 390
Query: 858 VDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFA 917
AA + K S + AFS ++ I + + + G + A
Sbjct: 391 --NASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCA 448
Query: 918 QAGGRKPENLSIALE-KARADLVSVLS 943
+ A + AD+ V +
Sbjct: 449 LP-------MLWAQKTNTAADIFIVFT 468
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 5.6
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 378 EKAIELSTHIDSDVKAREQRILEELKRE-ELRFVQTLERGEKLLDQMLA--DALSRTRES 434
E+ L +D+ K EQ E+ K++ E + E+ EK A + ++
Sbjct: 93 EQRKRLQ-ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 28.6 bits (63), Expect = 7.8
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 20/67 (29%)
Query: 392 KAREQR--ILEEL------KREELRFVQTLERGEKLLDQMLA---DALSRTRESGSVPRL 440
K RE++ L+EL +E R E+ +K L++ + + + + + R+
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWR-----EKAKKDLEEWNQRQSEQVEKNKINN---RI 140
Query: 441 SGQDAFL 447
+ AF
Sbjct: 141 A-DKAFY 146
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 29.6 bits (66), Expect = 5.7
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 365 RGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKR--EELRFVQTLERGEKLLDQ 422
R FL +A EL ID + + + L+ + L R + Q
Sbjct: 50 RLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQ 109
Query: 423 MLADALSRTRESGSVPRLS 441
L R G+VP+
Sbjct: 110 FSRQMLDRKLLLGNVPKQM 128
>3osq_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia
coli}
Length = 661
Score = 29.8 bits (66), Expect = 5.8
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 166 LWISVYEDDD---EAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208
+WI+ + + E + + K+ G+ V ++ F ATG
Sbjct: 45 IWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG 90
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 29.5 bits (66), Expect = 6.2
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 888 IVDLGIQAGKFIGPIAKLCGGGGGG 912
D+ AG + K+ G GGGG
Sbjct: 280 AFDVATGAGA-MA--GKVSGAGGGG 301
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 29.1 bits (65), Expect = 8.2
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 18/120 (15%)
Query: 742 KIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLR 801
+ I G+ + G+ E+ DS + + S + D L
Sbjct: 126 EYIRATNKKVGVFPKDKTQGKFINEW----DSIFEPVKSEFNLVD------ASLGLAKCL 175
Query: 802 TA--RNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVD 859
E+AN++ AS +S + +E+ ++ + E L+D
Sbjct: 176 AIKDEQELANIK------GASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLID 229
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera;
TEM, beta-lactamase, MBP, allosteric regulation, zinc
bindin maltose binding; 2.29A {Escherichia coli} PDB:
4dxc_A
Length = 637
Score = 29.2 bits (65), Expect = 8.3
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 166 LWISVYEDDD---EAFEIWNKEVGVPVEHIKRMGADDNFWNSGATG 208
+WI+ + + E + + K+ G+ V ++ F ATG
Sbjct: 9 IWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.387
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,869,935
Number of extensions: 981610
Number of successful extensions: 2545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2460
Number of HSP's successfully gapped: 58
Length of query: 947
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 844
Effective length of database: 3,825,930
Effective search space: 3229084920
Effective search space used: 3229084920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)