Query 002253
Match_columns 947
No_of_seqs 419 out of 1953
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 19:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1932 TATA binding protein a 100.0 5E-163 1E-167 1412.5 66.0 891 1-947 3-959 (1180)
2 PRK14015 pepN aminopeptidase N 100.0 6.1E-71 1.3E-75 673.6 72.8 544 15-682 15-578 (875)
3 TIGR02414 pepN_proteo aminopep 100.0 4.2E-69 9.2E-74 655.4 70.5 536 16-682 4-566 (863)
4 KOG1046 Puromycin-sensitive am 100.0 1.2E-69 2.6E-74 668.6 43.0 586 13-720 29-634 (882)
5 TIGR02412 pepN_strep_liv amino 100.0 1.3E-67 2.8E-72 651.7 52.4 565 17-716 12-596 (831)
6 TIGR02411 leuko_A4_hydro leuko 100.0 2.4E-64 5.2E-69 599.1 42.5 433 17-519 9-453 (601)
7 COG0308 PepN Aminopeptidase N 100.0 6.3E-61 1.4E-65 591.6 51.4 528 22-682 25-572 (859)
8 PF01433 Peptidase_M1: Peptida 100.0 4.6E-56 1E-60 511.2 27.5 372 15-442 2-390 (390)
9 KOG1047 Bifunctional leukotrie 100.0 1.8E-49 3.9E-54 435.9 29.4 442 1-518 1-461 (613)
10 PF13485 Peptidase_MA_2: Pepti 98.8 3.6E-09 7.7E-14 101.2 5.2 102 346-465 26-128 (128)
11 COG3975 Predicted protease wit 98.6 1E-06 2.2E-11 99.3 18.4 226 277-517 182-435 (558)
12 PRK09687 putative lyase; Provi 97.4 0.007 1.5E-07 66.3 18.4 217 657-935 55-279 (280)
13 PRK09687 putative lyase; Provi 97.4 0.0052 1.1E-07 67.3 17.2 177 663-899 98-278 (280)
14 PRK13800 putative oxidoreducta 95.8 0.32 6.9E-06 62.4 19.2 132 759-928 757-889 (897)
15 PF13646 HEAT_2: HEAT repeats; 95.7 0.049 1.1E-06 48.1 8.1 71 659-737 3-73 (88)
16 PRK13800 putative oxidoreducta 95.1 0.76 1.6E-05 59.0 18.9 218 650-928 615-857 (897)
17 TIGR02270 conserved hypothetic 94.9 0.91 2E-05 52.5 17.2 195 657-921 56-251 (410)
18 COG1413 FOG: HEAT repeat [Ener 94.5 2.3 5.1E-05 47.8 19.1 194 657-903 45-242 (335)
19 PF10460 Peptidase_M30: Peptid 93.9 0.37 8.1E-06 54.1 10.7 138 346-509 140-285 (366)
20 PF07607 DUF1570: Protein of u 93.4 0.055 1.2E-06 51.6 2.7 38 347-385 3-43 (128)
21 PF04450 BSP: Peptidase of pla 93.2 1.5 3.3E-05 45.5 13.2 171 280-504 25-204 (205)
22 PF05299 Peptidase_M61: M61 gl 93.0 0.042 9.1E-07 51.9 1.2 42 347-388 6-58 (122)
23 PF13646 HEAT_2: HEAT repeats; 91.8 0.84 1.8E-05 40.1 8.1 87 692-814 2-88 (88)
24 KOG0946 ER-Golgi vesicle-tethe 91.3 1.1 2.3E-05 54.1 10.0 143 642-815 107-265 (970)
25 PF01602 Adaptin_N: Adaptin N 89.8 2.3 5E-05 51.0 11.9 226 660-928 84-323 (526)
26 PF01347 Vitellogenin_N: Lipop 88.7 0.78 1.7E-05 56.4 6.8 127 776-925 481-607 (618)
27 smart00638 LPD_N Lipoprotein N 88.5 17 0.00036 44.3 18.1 144 759-925 412-563 (574)
28 PF01602 Adaptin_N: Adaptin N 83.3 13 0.00028 44.6 13.4 237 655-928 113-359 (526)
29 PF03130 HEAT_PBS: PBS lyase H 80.0 2.2 4.8E-05 28.9 3.0 26 707-736 1-26 (27)
30 smart00567 EZ_HEAT E-Z type HE 77.8 2.2 4.9E-05 29.4 2.5 27 705-735 1-27 (30)
31 KOG0567 HEAT repeat-containing 71.2 59 0.0013 35.0 12.0 70 660-735 40-109 (289)
32 PTZ00429 beta-adaptin; Provisi 70.6 1.2E+02 0.0027 38.0 16.8 51 667-719 116-168 (746)
33 PF10026 DUF2268: Predicted Zn 68.3 20 0.00043 37.1 8.0 39 346-384 66-108 (195)
34 PF10023 DUF2265: Predicted am 66.2 7.9 0.00017 43.1 4.7 38 345-388 165-202 (337)
35 PF02985 HEAT: HEAT repeat; I 66.1 8.6 0.00019 26.8 3.3 25 693-719 4-28 (31)
36 PF13513 HEAT_EZ: HEAT-like re 63.9 19 0.00041 28.5 5.4 27 690-718 29-55 (55)
37 KOG0567 HEAT repeat-containing 63.6 12 0.00026 40.0 5.2 53 669-723 200-252 (289)
38 KOG1932 TATA binding protein a 59.6 4 8.6E-05 51.3 1.0 100 433-538 444-554 (1180)
39 COG4324 Predicted aminopeptida 58.8 9.4 0.0002 40.4 3.4 37 346-388 198-234 (376)
40 PF08252 Leader_CPA1: arg-2/CP 58.5 6.3 0.00014 25.3 1.2 15 931-945 8-22 (24)
41 COG1413 FOG: HEAT repeat [Ener 56.0 92 0.002 34.8 11.3 126 665-817 83-208 (335)
42 PF11864 DUF3384: Domain of un 54.8 2.9E+02 0.0063 32.7 15.6 35 778-816 150-184 (464)
43 KOG1824 TATA-binding protein-i 54.4 1.7E+02 0.0036 37.1 13.1 159 699-901 340-505 (1233)
44 smart00731 SprT SprT homologue 54.4 20 0.00043 35.2 4.8 65 287-359 5-73 (146)
45 PF03272 Enhancin: Viral enhan 52.1 2.3E+02 0.005 35.8 14.5 113 265-384 144-275 (775)
46 PF12315 DUF3633: Protein of u 50.0 32 0.00069 35.6 5.4 41 346-388 94-134 (212)
47 PF13699 DUF4157: Domain of un 49.4 19 0.00041 31.4 3.3 67 288-357 6-73 (79)
48 KOG2171 Karyopherin (importin) 45.0 4E+02 0.0087 34.5 14.8 66 655-722 347-420 (1075)
49 KOG4535 HEAT and armadillo rep 44.8 7 0.00015 44.8 -0.1 70 690-771 574-651 (728)
50 PF01863 DUF45: Protein of unk 44.4 45 0.00097 34.4 5.9 67 280-360 109-179 (205)
51 PTZ00429 beta-adaptin; Provisi 42.8 3.3E+02 0.0071 34.4 13.8 101 688-816 104-206 (746)
52 PRK04860 hypothetical protein; 42.1 58 0.0013 32.5 5.9 67 282-357 6-75 (160)
53 TIGR02270 conserved hypothetic 41.0 2.4E+02 0.0052 32.9 11.6 118 659-819 151-268 (410)
54 KOG4224 Armadillo repeat prote 38.7 68 0.0015 36.0 6.1 121 690-815 252-428 (550)
55 PF04826 Arm_2: Armadillo-like 35.7 4.7E+02 0.01 28.3 12.1 127 657-793 14-165 (254)
56 PF06685 DUF1186: Protein of u 35.0 1.3E+02 0.0028 32.4 7.5 77 758-846 127-203 (249)
57 PF11940 DUF3458: Domain of un 33.1 7.9E+02 0.017 28.1 21.4 42 641-682 71-112 (367)
58 PF06114 DUF955: Domain of unk 30.6 47 0.001 30.4 3.1 18 345-362 42-59 (122)
59 PF10263 SprT-like: SprT-like 30.2 76 0.0017 31.2 4.7 17 344-360 59-75 (157)
60 PF09292 Neil1-DNA_bind: Endon 29.2 2.9 6.3E-05 30.2 -3.9 26 752-778 2-27 (39)
61 PF11865 DUF3385: Domain of un 28.4 3.6E+02 0.0077 26.9 9.1 32 690-722 11-42 (160)
62 PF01447 Peptidase_M4: Thermol 28.4 2.2E+02 0.0048 28.1 7.4 28 275-303 66-93 (150)
63 PHA02564 V virion protein; Pro 26.9 3E+02 0.0066 26.9 7.9 21 793-813 120-140 (141)
64 KOG2259 Uncharacterized conser 26.4 36 0.00078 40.9 1.7 44 690-735 374-419 (823)
65 PF01435 Peptidase_M48: Peptid 26.3 83 0.0018 32.8 4.4 19 346-364 90-108 (226)
66 PHA02456 zinc metallopeptidase 23.2 51 0.0011 30.2 1.7 12 346-357 80-91 (141)
67 PHA01816 hypothetical protein 23.1 1.1E+02 0.0024 28.3 3.8 55 730-800 45-99 (160)
68 KOG2973 Uncharacterized conser 22.8 1.1E+03 0.024 26.3 12.8 33 786-818 131-164 (353)
69 PRK04351 hypothetical protein; 22.2 96 0.0021 30.6 3.6 12 345-356 61-72 (149)
70 cd00870 PI3Ka_III Phosphoinosi 22.1 4.3E+02 0.0094 26.5 8.3 83 674-764 64-147 (166)
71 COG4783 Putative Zn-dependent 20.2 93 0.002 36.3 3.4 38 776-816 387-424 (484)
72 PF13574 Reprolysin_2: Metallo 20.1 57 0.0012 33.0 1.6 12 346-357 112-123 (173)
73 PF12725 DUF3810: Protein of u 20.0 53 0.0011 36.8 1.4 40 347-399 198-237 (318)
No 1
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=5.3e-163 Score=1412.53 Aligned_cols=891 Identities=37% Similarity=0.609 Sum_probs=732.6
Q ss_pred CCCCCCCCCcC----CCCCCCCcEEEEEEEEEE-EeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeeee
Q 002253 1 MAKPRKPKNEE----TKVENSGAVVRHQKLCLS-IDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPTE 73 (947)
Q Consensus 1 ~~~~~~~~~~~----p~~~~~~~~~~hy~l~L~-id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~~ 73 (947)
|+|.|++++.. ..+++++..++||+|+|+ ||+.++++.|.++|+|.+ ++++.|.|||++|+|.+|.|+|.++.
T Consensus 3 ~~~~~ppr~~~~~g~~~~e~~~~~~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~ 82 (1180)
T KOG1932|consen 3 MAKARPPRPEEAPGAKTSENPGRPVLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTK 82 (1180)
T ss_pred cccCCCCCCccCCCcccccCCCCcceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccc
Confidence 56777777633 355667778999999998 999999999999999984 68999999999999999999999999
Q ss_pred eeeCCCCcccchhhhhccccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCc
Q 002253 74 FEYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN 153 (947)
Q Consensus 74 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~ 153 (947)
|.|+++.+..+..+ .|.......+ .++.....|... ..+.|+|.|.++++... .+.. ..
T Consensus 83 f~y~d~~q~~~~~~-~~~~~l~~~s-~~~~~~~~y~~l--~~~~g~L~I~ipk~~~~--~~ee---------------~~ 141 (1180)
T KOG1932|consen 83 FIYNDPTQNDCTDE-IWQRVLDPAS-QSHFLAVQYEDL--DEDNGELLIKIPKESKK--VGEE---------------LK 141 (1180)
T ss_pred eeecchhhhhhhhh-hhhhhhhhhh-hhhhHHHhhhcc--ccCCCeEEEEcCchhhh--hhhh---------------cc
Confidence 99998855444222 2322111111 112222223221 22467899987654211 1110 01
Q ss_pred cEEEEEEEEEecCCcceEeeec---------eEeccccc--CCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceee
Q 002253 154 VKLVRIDYWVEKVEVGIHFDGN---------ALHTDNQI--RRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLY 222 (947)
Q Consensus 154 ~~~~~i~y~~~~~~~G~~f~~~---------~~~T~~ep--~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~ 222 (947)
...++|+|.+++|..|++|++. +++|.+.+ .+||+||||+|+++++|||+|++++|++++++++|+|.+
T Consensus 142 ~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~ 221 (1180)
T KOG1932|consen 142 ALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLE 221 (1180)
T ss_pred ceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccceEEeecCCccccceEEEEEEecccceeccchhhhh
Confidence 2357899999999999999864 35555543 368999999999999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEecCCCCcceeeEEEEecceeeecCCCCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 002253 223 QVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPF 302 (947)
Q Consensus 223 ~~~~~~~~~~~t~~F~~t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~ 302 (947)
++.++ |.+++|++|..+.|+++..||||||+|+.+..+.+.+|++||+|+..+.+++++-.+.++++|||++||..|||
T Consensus 222 ~v~~~-D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~P~~~~i~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF 300 (1180)
T KOG1932|consen 222 QVETP-DLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVEPSMIDITHFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPF 300 (1180)
T ss_pred eeecc-cccccEEEEEEeccCCccccceeeccccccCCCccCcceeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCc
Confidence 99876 88999999999999999999999999999988889999999999999999999999999999999999988999
Q ss_pred CCccEEEeCCCCcccccccccchhhcccccccCccccchhhHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHH
Q 002253 303 GSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTD 382 (947)
Q Consensus 303 ~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~d~~~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~ 382 (947)
+.|++||||+.+. ....+++|.|+++++||+.++||+.+.+++.+|.+||.||||++|||..|+|.||.+|+|.||.+
T Consensus 301 ~~~k~VFvd~~~~--~i~~~asl~I~st~lLy~~~iIDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~ 378 (1180)
T KOG1932|consen 301 SCYKTVFVDEAAV--EISSYASLSIFSTSLLYSKNIIDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTG 378 (1180)
T ss_pred ceeeEEEecCCcc--eeeecceeeeeeccccchHhhhhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHH
Confidence 9999999996432 23445589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhhcchhhccc-CCCcccCCCCccccCCCCcccccccchhhccHHHHHHHHHHHh----ChHH
Q 002253 383 SFIKKFLGNNEARYRRYKANCAVCKADD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQM----GSNF 457 (947)
Q Consensus 383 ~~~~~~~G~~e~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~l----G~e~ 457 (947)
+|+++++|+|||||+.++.+++++..|. .++..+.. +++++. .| -.|+++.+|.+.+++ |.-.
T Consensus 379 l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~-----Pi~~s~---k~----~~~~~~~lh~~~r~~~~~s~~~~ 446 (1180)
T KOG1932|consen 379 LFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTR-----PISPSM---KF----KLKGPFHLHISIRHLHTLSGSYG 446 (1180)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeecc-----CCCcch---hh----cccCcceeeecccceeecChhHH
Confidence 9999999999999999999999998877 45444431 121110 01 245556555555554 2233
Q ss_pred HHHHHHHHHHhhcCCC-CCCCCCHHHHHHHHHHhcCCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeecc
Q 002253 458 FRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT 536 (947)
Q Consensus 458 F~~~L~~yl~~~~~~~-~~~~~st~~F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~ 536 (947)
....+++++...+.++ .+..++.+.|+++++.++.. .++.||++|+++.|+|.+.+.++||++++.|++.+.|.+.
T Consensus 447 ~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~---~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~i~Q~v~ 523 (1180)
T KOG1932|consen 447 MAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM---LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMGIDQWVR 523 (1180)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh---HHHHHHHHHHhccCCeeEEEEEEEeeccccccHHHHHHhh
Confidence 4445555555555444 12234455566666655421 2589999999999999999999999999999999999665
Q ss_pred CCCCCCCCccc------CCCCC-CC---CCCCCCcceeEEEEEeccCCcccccccccCCCcceEEEeeeccchhhhhhcC
Q 002253 537 VKPDSRTPVLS------SNTDS-EN---RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALK 606 (947)
Q Consensus 537 ~~~~~~~~~~~------~~~~~-~~---~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k 606 (947)
.......++.+ ...+. .. ..+...|+||||||+||.||+|+|++ +| ++.|+++||||||| +|++|
T Consensus 524 ~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g~~~~~GpmtIrv~ElDGtfeH~l-qi-~~~~~k~dI~chsK---~R~~k 598 (1180)
T KOG1932|consen 524 TGGHAPFSVFSDFNRKRNALEHEIKQDYTAGNEKYTGPMTIRVQELDGTFEHTL-QI-DGDFTKLDIQCHSK---SRRQK 598 (1180)
T ss_pred hccccceeeecccchhhhhhhhhccccccCCCceeccceEEEEEeecCcceeeE-Ee-cCcccccceeeccc---ccccC
Confidence 44332222111 00011 11 11225699999999999999999986 45 55699999999999 46688
Q ss_pred CCCCCCCCCCCCCCCcccccccccCCCCCceEEEecCCCceeeEeeccCchhHHHHHHhhcCChHHHHHHHHHHHcCCCC
Q 002253 607 PKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 686 (947)
Q Consensus 607 ~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~ 686 (947)
+||.+..+|||+++| ++.||. ++|++|||+||||||||+|+++||+|||++||++||||+||+|||++|++.|++
T Consensus 599 kKk~~l~sgEE~e~d-l~~~d~----~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~ 673 (1180)
T KOG1932|consen 599 KKKVPLMSGEEIEMD-LTNMDE----ESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST 673 (1180)
T ss_pred CcCCCCCChhhhccc-ccccCc----cCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc
Confidence 889999999999988 878763 899999999999999999999999999999999999999999999999999866
Q ss_pred chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 002253 687 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPH 766 (947)
Q Consensus 687 s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~ 766 (947)
..+++|+|||.|+|||||||++||+||+++++++.+|.|++||+++|+++||+..++|||||||+|||+|||||+||.
T Consensus 674 --~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~ 751 (1180)
T KOG1932|consen 674 --ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPV 751 (1180)
T ss_pred --hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHH-------------HHHHHHHHH
Q 002253 767 AVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSIL-------------FLSSLLKRI 833 (947)
Q Consensus 767 a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~-------------~~~~~~~ei 833 (947)
|||.+|+.+|+||++|++||||||||||||+|+|||+||||+||+||++..++..+.. +...++.||
T Consensus 752 a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei 831 (1180)
T KOG1932|consen 752 AFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEI 831 (1180)
T ss_pred HHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876643322 234589999
Q ss_pred HHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccccccChhhHHH
Q 002253 834 DRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALS 913 (947)
Q Consensus 834 ~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~ 913 (947)
+|+|+||+++|||.++|+++||+++.+++ ..|++|.++ .++..|+.++++.++|++|+++.++++.. +|.-.+|.
T Consensus 832 ~r~L~~e~l~pS~k~ii~~~~l~~~~~l~--k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~-~~~~~~l~ 906 (1180)
T KOG1932|consen 832 TRLLNMEKLMPSFKHIIKVSALKAIRELQ--KSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV-DGSPDDLA 906 (1180)
T ss_pred HHHHHHHhhchhhhceEEeeechhhhhhh--hccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-CCChHHHH
Confidence 99999999999999999999999999985 489999988 45789999999999999999999999863 55566788
Q ss_pred HHHHHhccC--CCcccc-----------------ccccchhhhhHHHHHhhcC
Q 002253 914 LFIKSVEEE--PSLRGE-----------------IGYSCYEDMSDKRWIRFQS 947 (947)
Q Consensus 914 ~~~~~~~~~--~~~r~~-----------------~~~~~~~~~~~~~~~~~~~ 947 (947)
+++..++.| |++|.+ .+.+|.+++++++|+++|.
T Consensus 907 ~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~~~s~~~~~~~~~~~~~~~~~ 959 (1180)
T KOG1932|consen 907 YILEILENDPDPVIRHKILDMLSQSNNPVTKGGTESDLLKEALVERLWKLKNL 959 (1180)
T ss_pred HHhhhcccCcchHHHHHHHHHhhccCCceeeccccCccccHHHHHhhhhhhcc
Confidence 888777664 344544 5668999999999999874
No 2
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=6.1e-71 Score=673.56 Aligned_cols=544 Identities=16% Similarity=0.209 Sum_probs=409.0
Q ss_pred CCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc--CCcceEEEeccCceeeEEEEcCeee---eeeeCCCCcccchhhhh
Q 002253 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV--PDIGIVGLHAENLGIESVLVDGEPT---EFEYYPHNHQNVENEKR 89 (947)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~--~~~~~I~L~a~~l~I~~V~v~g~~~---~f~~~~~~~~~~~~~~~ 89 (947)
..++|.+.||+|+|++|+++..++|.++|+..+ .+++.|.||+++|+|.+|.+||+++ .|++.+.
T Consensus 15 ~~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~~~~~~~~~~~~~---------- 84 (875)
T PRK14015 15 RPPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQPLAPSAYELDEE---------- 84 (875)
T ss_pred CCCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCEEcCccceEEcCC----------
Confidence 457899999999999999999999999999765 4578899999999999999999877 5554421
Q ss_pred ccccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEEecCCcc
Q 002253 90 WRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVG 169 (947)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~~~~G 169 (947)
.|.|.. + +. .++++ +.|.+.+..+ .+-.|
T Consensus 85 -----------------------------~L~I~~--l----~~---~~~l~--I~y~~~P~~n-----------~~l~G 113 (875)
T PRK14015 85 -----------------------------GLTIEN--L----PD---RFTLE--IETEIDPEAN-----------TALEG 113 (875)
T ss_pred -----------------------------EEEEec--C----Cc---cEEEE--EEEEEecCCC-----------CCcee
Confidence 355531 0 00 01111 1222222110 01125
Q ss_pred eEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeC-Ce-EEEEcCceeeeeeccCCCCceEEEEecCCCCccee
Q 002253 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQ-NL-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKW 247 (947)
Q Consensus 170 ~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~-~~-~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~yl 247 (947)
+++...+++|||||++||+||||+|+|+.|+||+++|++|+ .| +++|||.++++.. ..+++++++|+.++|||+|+
T Consensus 114 ly~s~~~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~~~~~--~~~g~~~~~w~~~~PmpsYL 191 (875)
T PRK14015 114 LYRSGGMFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLVESGE--LPDGRHWATWEDPFPKPSYL 191 (875)
T ss_pred eEEECCEEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCcccccee--ccCCeEEEEEEeCCCcccce
Confidence 54444568999999999999999999999999999999999 48 6899999987642 35678999999999999999
Q ss_pred eEEEEecceeeecC----C--CCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccccc
Q 002253 248 ITLAVAPFEVLPDH----H--QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTF 321 (947)
Q Consensus 248 iafaVG~F~~~~~~----~--~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ 321 (947)
++|+||+|+.+++. . +.++++|++|+..+.+.++++.++++|+|||++||.+|||++|++|++|++..++|+++
T Consensus 192 ~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~ 271 (875)
T PRK14015 192 FALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENK 271 (875)
T ss_pred EEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccc
Confidence 99999999998753 1 36789999999999999999999999999999999999999999999997767789999
Q ss_pred ccchhhcc-cccccCcccc-chhh-HHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHH
Q 002253 322 GAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR 398 (947)
Q Consensus 322 gagl~~~~-~~lL~~~~~~-d~~~-~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~ 398 (947)
||++|. ..+|.++... +... ....+||||+|||||||+||++||+|+|||||||+|++..+.....+....++..
T Consensus 272 --Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~ 349 (875)
T PRK14015 272 --GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIED 349 (875)
T ss_pred --cccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 788885 4577776542 2222 2345899999999999999999999999999999999988877765533222211
Q ss_pred HHhhcchhhcccCCCcccCCCCccccCCC---CcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCC
Q 002253 399 YKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPV 475 (947)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~ 475 (947)
...... ..+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+.+|++++
T Consensus 350 ~~~l~~-------~~~~~D~~~~a~pi~p~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~-- 420 (875)
T PRK14015 350 VRVLRA-------AQFAEDAGPMAHPVRPDSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQA-- 420 (875)
T ss_pred HHHHhh-------hcccccccccCCCCCCcchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC--
Confidence 111100 0111111122223321 2344678899999999999999999999999999999999999985
Q ss_pred CCCCHHHHHHHHHHhcCCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCC
Q 002253 476 RTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENR 555 (947)
Q Consensus 476 ~~~st~~F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~ 555 (947)
+++++|.+.+++++ |.|+.+|+ +|++++|+|.++|+.+|+..++.++++++|.+..... .
T Consensus 421 --at~~Df~~ale~as---g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~~~~~--------------~ 480 (875)
T PRK14015 421 --VTCEDFVAAMEDAS---GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTPPTPG--------------Q 480 (875)
T ss_pred --CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCCCCCC--------------C
Confidence 79999999999887 56899986 8999999999999999987777888999987542211 0
Q ss_pred CCCCCcceeEEEEEeccCCcccccccccCCCc-ceEEEeeeccchhhhhhcCCCCCCCCCCCCCCCCcccccccccCCCC
Q 002253 556 DGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMES 634 (947)
Q Consensus 556 ~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~-~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~ 634 (947)
.....|.+|++|.+...+|.--- +...++. ...+++.-.. .. +.-.+ -.+.
T Consensus 481 ~~~~~~~iPl~i~l~~~~G~~~~--~~~~~~~~~~~l~l~~~~-------------q~----------f~f~~---~~~~ 532 (875)
T PRK14015 481 PEKQPLHIPVAIGLLDPDGKELP--LQLEGEPVERVLELTEAE-------------QT----------FTFEN---VAER 532 (875)
T ss_pred CCCceEEEEEEEEEEcCCCceee--ccccCCccceEEEEcCCe-------------eE----------EEEcC---CCCC
Confidence 12346999999998887774210 0011110 1112221000 00 00000 0134
Q ss_pred CceEEEecCCCceeeEeeccCchhHHHHHHhhcCChHHHHHHHHHHHc
Q 002253 635 PLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (947)
Q Consensus 635 ~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (947)
|+ +.+|++|.-..++..++++..+..|+++|.|..+|.||++.|..
T Consensus 533 p~--~s~~r~fsapv~~~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 578 (875)
T PRK14015 533 PV--PSLLRGFSAPVKLEYDYSDEDLLFLMAHDSDPFNRWEAGQRLAT 578 (875)
T ss_pred ce--EEecCCCCCcEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 44 79999999999999999999999999999999999999999875
No 3
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=4.2e-69 Score=655.38 Aligned_cols=536 Identities=16% Similarity=0.186 Sum_probs=408.5
Q ss_pred CCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeee---eeeCCCCcccchhhhhcc
Q 002253 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE---FEYYPHNHQNVENEKRWR 91 (947)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~---f~~~~~~~~~~~~~~~~~ 91 (947)
.++|.+.||+|+|+++++...++|.++|++.+ ...+.|.||+++|+|.+|.+||+++. |++.+
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~~~~~~~~~~~~------------- 70 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGKPLAAGDYQLDD------------- 70 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCEecCcceEEEcC-------------
Confidence 46799999999999999999999999999875 34568999999999999999997643 33221
Q ss_pred ccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEE----ecCC
Q 002253 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWV----EKVE 167 (947)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~----~~~~ 167 (947)
..|.|... | ..+ .++|.|.. +.+.
T Consensus 71 --------------------------~~L~I~~~-~--------~~~-----------------~l~i~~~~~p~~n~~l 98 (863)
T TIGR02414 71 --------------------------ETLTIASV-P--------ESF-----------------TLEIETEIHPEENTSL 98 (863)
T ss_pred --------------------------CEEEEeeC-C--------ccE-----------------EEEEEEEeecccCCCC
Confidence 12555310 0 001 12233322 1223
Q ss_pred cceEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEecCCCCcc
Q 002253 168 VGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (947)
Q Consensus 168 ~G~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~-~-~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~ 245 (947)
.|+++.+.+++|||||++||+||||+|+|+.||+|+++|++|++ | +++|||.++++.. .++++++++|+.++|||+
T Consensus 99 ~GlY~s~~~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~~~~~--~~~g~~~~~f~~t~pmpt 176 (863)
T TIGR02414 99 EGLYKSGGNFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKIASGE--LPDGRHWAEWEDPFPKPS 176 (863)
T ss_pred eEEEEeCCeEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCcccccee--cCCCeEEEEEeCCCCcCh
Confidence 46666566789999999999999999999999999999999986 6 6689999876543 356788999999999999
Q ss_pred eeeEEEEecceeeecCC------CCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccc
Q 002253 246 KWITLAVAPFEVLPDHH------QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSS 319 (947)
Q Consensus 246 yliafaVG~F~~~~~~~------~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~ 319 (947)
|++||+||+|+.+++.. +.++++|+.|+..+.+.++++.++++|+|||++||.+|||++|++|+||++..++|+
T Consensus 177 YLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaME 256 (863)
T TIGR02414 177 YLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAME 256 (863)
T ss_pred hHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCcccc
Confidence 99999999999987531 356899999999999999999999999999999999999999999999977678999
Q ss_pred ccccchhhcc-cccccCcccc-chhh-HHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHH
Q 002253 320 TFGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARY 396 (947)
Q Consensus 320 ~~gagl~~~~-~~lL~~~~~~-d~~~-~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~ 396 (947)
|+ ||++|. ..+|.++... +... ....+++||+|||||||+||++||+++|||||||+|++.++.....|....++
T Consensus 257 N~--GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~ 334 (863)
T TIGR02414 257 NK--GLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRI 334 (863)
T ss_pred cc--ceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 99 788995 5577777542 2222 23458999999999999999999999999999999999888777665433222
Q ss_pred HHHHhhcchhhcccCCCcccCCCCccccCCC---CcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCC
Q 002253 397 RRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGAS 473 (947)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~ 473 (947)
........ ..+..++.+..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++|++++
T Consensus 335 ~~~~~lr~-------~~f~~D~~p~~~Pi~~~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~ 407 (863)
T TIGR02414 335 EDVRLLRA-------HQFPEDAGPMAHPVRPESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQA 407 (863)
T ss_pred HHHHHHHh-------hhhcccccccCCCCCCcchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC
Confidence 21111110 0111122222233321 2345678899999999999999999999999999999999999985
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCC
Q 002253 474 PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSE 553 (947)
Q Consensus 474 ~~~~~st~~F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~ 553 (947)
++++||.+.+++++ +.|+.+|+ +|++|+|+|.++|+.+|+.++..++++++|.+...+.
T Consensus 408 ----at~~Df~~ale~as---g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~~~~~------------- 466 (863)
T TIGR02414 408 ----VTCEDFVAAMEDAS---GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTPPTPG------------- 466 (863)
T ss_pred ----CCHHHHHHHHHHHh---CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCCCCCC-------------
Confidence 79999999999887 56899985 8999999999999999987777788998887532110
Q ss_pred CCCCCCCcceeEEEEEeccCCc-ccccccccCCCc--ceEEEeeeccchhhhhhcCCCCCCCCCCCCCCCCccccccccc
Q 002253 554 NRDGDIGWPGMMSIRVHELDGM-YDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRS 630 (947)
Q Consensus 554 ~~~~~~~~~gp~tiri~e~dGt-~~h~~~~~~~~~--~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~ 630 (947)
......|.+|++|.+...+|. .... ..++. ...+++.. + + ....+
T Consensus 467 -~~~~~~~~iPl~i~l~~~~G~~~~~~---~~~~~~~~~~l~l~~----------~----------~--------~~f~f 514 (863)
T TIGR02414 467 -QTEKKPLHIPIAVGLLGPNGRKLMLS---LDGERDTTRVLELTE----------A----------E--------QTFVF 514 (863)
T ss_pred -CCcCCceEEEEEEEEEeCCCCEeeec---ccCCCCcceEEEEcc----------C----------E--------EEEEE
Confidence 012347999999999888885 2110 11110 11122210 0 0 00000
Q ss_pred -C-CCCCceEEEecCCCceeeEeeccCchhHHHHHHhhcCChHHHHHHHHHHHc
Q 002253 631 -S-MESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (947)
Q Consensus 631 -~-~~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (947)
. .+.|+ +.++++|.-..++.+++++..+..|+++|.|..+|.||++.|..
T Consensus 515 ~~~~~~p~--~sl~r~fsapv~l~~~~~~~~l~~l~~~d~d~~~r~~a~q~l~~ 566 (863)
T TIGR02414 515 EGIAEKPV--PSLLRGFSAPVNLEYPYSDEDLLLLLAHDSDPFNRWEAGQRLAR 566 (863)
T ss_pred cCCCCCCe--eeecCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 0 12344 88999999999999999999999999999999999999999875
No 4
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-69 Score=668.57 Aligned_cols=586 Identities=18% Similarity=0.250 Sum_probs=428.7
Q ss_pred CCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhcc
Q 002253 13 KVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWR 91 (947)
Q Consensus 13 ~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~ 91 (947)
......++|.||+|.|.+++....|.|.+.|.+.+ .+++.|.||+.++.|.++.+......-.-. . ..
T Consensus 29 ~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~-~---~~------- 97 (882)
T KOG1046|consen 29 YRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQ-L---EV------- 97 (882)
T ss_pred ccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccc-c---cc-------
Confidence 45677899999999999999999999999999987 468899999999999999884421110000 0 00
Q ss_pred ccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCcc-EEEEEEEEEecCCcce
Q 002253 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNV-KLVRIDYWVEKVEVGI 170 (947)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~i~y~~~~~~~G~ 170 (947)
. .........+.+....+ +..+. .++ ..+.|.|.++... |+|+..|...+ +|.
T Consensus 98 ~------------------~~~~~~~~~l~~~~~~~---l~~~~-~y~--L~i~f~g~l~~~~~G~y~s~y~~~~--~~~ 151 (882)
T KOG1046|consen 98 S------------------VEEKEQEETLVFPLNET---LLAGS-SYT--LTIEFTGKLNDSSEGFYRSSYTDSE--GSE 151 (882)
T ss_pred c------------------ccccccceEEEEEcccc---cccCC-eEE--EEEEEeEeecCCcceeeeecccCCC--Cce
Confidence 0 00000001234432211 11111 122 2356777777654 89998886533 232
Q ss_pred EeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeeEE
Q 002253 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (947)
Q Consensus 171 ~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~yliaf 250 (947)
..++.||+||++||+.|||||+|+.||||.|+|.+|++++++|||+.+++.. .++++++.+|+.|+|||+|++||
T Consensus 152 ---~~~~~Tqfept~AR~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~~~~~--~~~~~~~~~F~~Tp~MstYLvAf 226 (882)
T KOG1046|consen 152 ---KSIAATQFEPTDARRAFPCFDEPAFKATFTITLVHPKGYTALSNMPVIKEEP--VDDGWKTTTFEKTPKMSTYLVAF 226 (882)
T ss_pred ---EEEEEeccCccchhhcCCCCCcccccCceEEEEEecCCceEeecCccccccc--ccCCeeEEEEEecCCCchhhhee
Confidence 4678999999999999999999999999999999999999999999887664 34459999999999999999999
Q ss_pred EEecceeeecCCC--CeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc
Q 002253 251 AVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (947)
Q Consensus 251 aVG~F~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~ 328 (947)
+||+|+..+.... .++++|++|+...+..++++.+.++++||+++||++||++|+|+|+||++..++|+|| ||+++
T Consensus 227 ~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENw--GLvty 304 (882)
T KOG1046|consen 227 AVGDFVYVETITKSGVPVRVYARPEKINQGQFALEVATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENW--GLVTY 304 (882)
T ss_pred eeeccccceeecCCCceEEEEeChHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCccccEEecCCccccchhcC--cceee
Confidence 9999999877654 7899999999999999999999999999999999999999999999999889999999 89999
Q ss_pred -ccccccCccccchh--hHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHHhhcch
Q 002253 329 -SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAV 405 (947)
Q Consensus 329 -~~~lL~~~~~~d~~--~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~~~~~~ 405 (947)
+..+|++|...... .....+||||||||||||+||++||+|+|||||||+||+++.++..++.....-. .....+
T Consensus 305 re~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~--~~~~~l 382 (882)
T KOG1046|consen 305 RETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQ--FLLENL 382 (882)
T ss_pred eehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHHHHHHhhccCCcchhhHHH--HHHHHH
Confidence 57799998665433 3345699999999999999999999999999999999999999988766543111 111111
Q ss_pred hhcccCCCcccCCCCccccC-----CCCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCCH
Q 002253 406 CKADDSGATALSSSASCKDL-----YGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLST 480 (947)
Q Consensus 406 ~~~~~~~~~~l~~~~~~~~l-----~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st 480 (947)
..++..|+..+++++ .+.++.+.|++++|.||++|||||+..+|++.|++||+.||.+++++| +++
T Consensus 383 -----~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe~~F~~gi~~yL~~~~y~n----a~~ 453 (882)
T KOG1046|consen 383 -----ERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGEEVFRKGLRSYLKKHQYSN----AKT 453 (882)
T ss_pred -----HHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhccCC----CCc
Confidence 112222332233333 233445689999999999999999999999999999999999999997 567
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCCCCCCC
Q 002253 481 KEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIG 560 (947)
Q Consensus 481 ~~F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (947)
+|+.+.++.. .+.|+..||+.|+.|+|+|+++|..+++ .+.++|.++..... + .+....
T Consensus 454 ~DLw~~l~~~---~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~----------~----~~~~~~ 512 (882)
T KOG1046|consen 454 EDLWDALEEG---SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQERFLSDPD----------P----SEDNYL 512 (882)
T ss_pred hhHHHHHhcc---CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEehhhhccCCC----------c----cccCcc
Confidence 7777766622 2579999999999999999999998765 66677666543211 0 123458
Q ss_pred cceeEEEEEeccCCcccccccccCCCcceEEEeeeccchhhhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCceEEE
Q 002253 561 WPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIR 640 (947)
Q Consensus 561 ~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wir 640 (947)
|..|+++....... + .++.+..++ .... + ..+.+||.
T Consensus 513 w~iPl~~~~~~~~~-~------------~~~~~~~~~-------------~~~~--------l---------~~~~~wi~ 549 (882)
T KOG1046|consen 513 WWIPLTYTTSGSGS-V------------PKFWLSSKS-------------TTIK--------L---------PESDQWIK 549 (882)
T ss_pred cceeEEEEcCCCCc-c------------ceeeecCCC-------------ccee--------c---------CCCCeEEE
Confidence 99999987543111 1 001110000 0000 0 12237999
Q ss_pred ecCCCceeeEeeccC-chhHHHHHHhhcCC---hH--HHH--HHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHH
Q 002253 641 ADPEMEYLAEIHFNQ-PVQMWINQLEKDGD---VV--AQA--QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (947)
Q Consensus 641 iDpd~e~l~~v~~~q-p~~m~~~QL~~drd---v~--aq~--eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa 712 (947)
++++..=..+|+++. .+...+.||.. ++ ++ ||+ ++ -+|......+......|...+.++ ..|.+...|+
T Consensus 550 ~N~~~~g~yRV~Yd~~~w~~l~~~l~~-~~~~~~~~Ra~li~D~-~~la~~~~~~~~~~l~l~~~l~~e-~~~~p~~~~~ 626 (882)
T KOG1046|consen 550 VNLEQTGYYRVNYDDENWALLIEQLKN-HESLSVIDRAQLINDA-FALARAGRLPYSIALNLISYLKNE-TDYVPWSAAI 626 (882)
T ss_pred EeCCcceEEEEEeCHHHHHHHHHHHhh-cCccCHhHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHhcc-cccchHHHHH
Confidence 999999999999997 57777777755 32 22 222 22 223332222333444577778776 4889999988
Q ss_pred HHHHhhcc
Q 002253 713 YALANTAS 720 (947)
Q Consensus 713 ~aL~~~~~ 720 (947)
.+|.+...
T Consensus 627 ~~l~~~~~ 634 (882)
T KOG1046|consen 627 RSLYKLHS 634 (882)
T ss_pred HHHHHHhh
Confidence 88887765
No 5
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.3e-67 Score=651.71 Aligned_cols=565 Identities=14% Similarity=0.149 Sum_probs=390.9
Q ss_pred CCcEEEEEEEEEEEeccCc--EEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCe-eeeeeeCCCCcccchhhhhccc
Q 002253 17 SGAVVRHQKLCLSIDMEKH--QIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE-PTEFEYYPHNHQNVENEKRWRS 92 (947)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~--~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~-~~~f~~~~~~~~~~~~~~~~~~ 92 (947)
..+++.||+|.|+++.+.. .+.|+++|++.+ .+++.|.||+.+++|++|++||. ++.+.+.+. .+.
T Consensus 12 ~~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~~~~~~~~~~~--~i~-------- 81 (831)
T TIGR02412 12 SLITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGILDVAPVYDGS--RIP-------- 81 (831)
T ss_pred HhccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCcccCccccCCC--EEE--------
Confidence 4578999999999986554 558888888876 45789999999999999999996 333332211 000
Q ss_pred cCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCC-ccEEEEEEEEEecCCcceE
Q 002253 93 MVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEKVEVGIH 171 (947)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~~~~~G~~ 171 (947)
...+..+ ..+|.|.+ .+.... ..|+++ | . .|.+|
T Consensus 82 ----------------l~~l~~g-~~~l~i~~----------------------~~~~~~~~~Gl~~--~-~-~~~~g-- 116 (831)
T TIGR02412 82 ----------------LPGLLTG-ENTLRVEA----------------------TRAYTNTGEGLHR--F-V-DPVDG-- 116 (831)
T ss_pred ----------------ccCCCCC-ceEEEEEE----------------------EEEecCCCceEEE--E-E-eCCCC--
Confidence 0001111 12333321 121111 124444 2 2 24455
Q ss_pred eeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeeEEE
Q 002253 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLA 251 (947)
Q Consensus 172 f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~yliafa 251 (947)
..+++|||||.+||+||||||+|+.||+|+|+|++|++|+|+|||++.+.. ..+++++++|+.++|||+|+++|+
T Consensus 117 --~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~~~~---~~~~~~~~~F~~t~pmstYL~a~~ 191 (831)
T TIGR02412 117 --EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRETDVT---PEPADRRWEFPETPKLSTYLTAVA 191 (831)
T ss_pred --eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceEECCCcccccc---ccCCCeEEEecCCCCcccceEEEE
Confidence 367899999999999999999999999999999999999999999987553 245678999999999999999999
Q ss_pred EecceeeecC-CCCeEEEEEcCCchhH--HHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc
Q 002253 252 VAPFEVLPDH-HQSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF 328 (947)
Q Consensus 252 VG~F~~~~~~-~~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~ 328 (947)
||+|+.++.. .+.++++||+|+..+. .+++++.+.++++|||++||+||||+||++|++|++..++|+++ |++++
T Consensus 192 vG~f~~~~~~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~--Glit~ 269 (831)
T TIGR02412 192 AGPYHSVQDESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENA--GCVTF 269 (831)
T ss_pred EeceEEEeecCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCccccc--ceeee
Confidence 9999998754 3578999999997664 56889999999999999999999999999999997667799998 78999
Q ss_pred ccccccCccccchh-hHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHHhhcchhh
Q 002253 329 SSQILYDEKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCK 407 (947)
Q Consensus 329 ~~~lL~~~~~~d~~-~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~~~~~~~~ 407 (947)
++.+|+.+...+.. .....+|+||+|||||||+||++||+|+|||||||+||+++++++..|.... +......
T Consensus 270 ~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~-~~~f~~~----- 343 (831)
T TIGR02412 270 AENFLHRAEATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLASAEATEYTDA-WTTFAAQ----- 343 (831)
T ss_pred chhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHHHHhcCCcchH-HHHHHHH-----
Confidence 77777665443222 1233589999999999999999999999999999999999999988765332 1111000
Q ss_pred cccCCCcccCCCCccccC----C-CCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCCHHH
Q 002253 408 ADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE 482 (947)
Q Consensus 408 ~~~~~~~~l~~~~~~~~l----~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~ 482 (947)
....++..++.++.+++ . ..++...|+.++|.||++|||||+..||++.|+++|+.|+++|++++ ++++|
T Consensus 344 -~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~n----at~~D 418 (831)
T TIGR02412 344 -GKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGN----ATLDD 418 (831)
T ss_pred -HHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCC----CCHHH
Confidence 00001111111222222 1 12344578999999999999999999999999999999999999996 69999
Q ss_pred HHHHHHHhcCCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEE-EEEEeeccCCCCCCCCcccCCCCCCCCCCCCCc
Q 002253 483 FRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVE-LAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (947)
Q Consensus 483 F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~ve-l~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (947)
|.+.+++++ |.++++||++|++++|+|.++|+..++. +.+. +.+.|. . ....|
T Consensus 419 l~~~l~~~s---g~dl~~~~~~W~~~~G~P~l~v~~~~~~--~~~~~~~~~~~--~-------------------~~~~~ 472 (831)
T TIGR02412 419 LIDSLAKAS---GRDLSAWSDAWLETAGVNTLTPEITTDG--GVVSALYPESS--G-------------------PPRPH 472 (831)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHcCCCCceEEEEEEECC--CeEEEEEEecC--C-------------------CCCCe
Confidence 999999887 5689999999999999999999988764 2333 222210 0 01247
Q ss_pred ceeEEEEEeccCCcccccccccCCCcceEEEeeeccchhhhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCceEEEe
Q 002253 562 PGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRA 641 (947)
Q Consensus 562 ~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiri 641 (947)
+.|+++. ..++.-.+ ...+ ..+.+.+. +. ...... + ..+..||.+
T Consensus 473 ~ip~~~~--~~~~~~~~------~~~~--~~~~~~~~----~~----~~~~~~-----~------------~~~~~~v~~ 517 (831)
T TIGR02412 473 RIAIGLY--DLDRDDLR------RTTL--VPLTISGE----RT----AVPQLV-----G------------KRAPALVLL 517 (831)
T ss_pred eEEEeee--ecCCCcce------eeeE--EEEEEecC----ce----eehhhc-----C------------CCCCCEEEE
Confidence 6777652 21111000 0011 12222111 00 000000 0 123479999
Q ss_pred cCCCceeeEeeccCc-hhHHHHHHhhcCChHHHHHHHH---HHHcCCCCc-hhHHhHHHhhhccCcchhHHHHHHHHHHH
Q 002253 642 DPEMEYLAEIHFNQP-VQMWINQLEKDGDVVAQAQAIA---ALEALPHLS-FNVVNTLNNFLSDSKAFWRVRIEAAYALA 716 (947)
Q Consensus 642 Dpd~e~l~~v~~~qp-~~m~~~QL~~drdv~aq~eAi~---~l~~~~~~s-~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~ 716 (947)
+.+..=.++|+++.. +-....+|....+...|..-+. +|.+-...+ ..+...+.+.|.+|. -|-|-.++...|.
T Consensus 518 N~~~~gyyrv~yd~~~~~~l~~~l~~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~-~~~v~~~~~~~l~ 596 (831)
T TIGR02412 518 NDDDLTYAKVRLDPTSFDTVLAALSKLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSET-DYAVVQQVLSQLL 596 (831)
T ss_pred eCCCcEEEEEECCHHHHHHHHHHhhhCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCC-chHHHHHHHHHHH
Confidence 999999999999864 4556667766656777664443 333211112 123444556667664 5555555555555
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=2.4e-64 Score=599.14 Aligned_cols=433 Identities=19% Similarity=0.267 Sum_probs=323.7
Q ss_pred CCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhccccC
Q 002253 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (947)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~ 94 (947)
..++|.||+|+|++|+++++|.|+|+|++.+ . .++.|.||+++|+|++|.++|.++.|+......
T Consensus 9 ~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~~------------- 75 (601)
T TIGR02411 9 KDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGLPADFAIGERKE------------- 75 (601)
T ss_pred CCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCcccceEeccccC-------------
Confidence 5699999999999999999999999999986 3 467899999999999999999888777543200
Q ss_pred CCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEEe-cCCcceEee
Q 002253 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE-KVEVGIHFD 173 (947)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~-~~~~G~~f~ 173 (947)
-....|.|.++.+ +..+. .++ +.+.|+|.++. .|+ +|+. ...+|- .
T Consensus 76 --------------------~~g~~L~I~l~~~---l~~g~-~~~--l~I~Y~~~~~~-~gl----~~~~~~~t~g~--~ 122 (601)
T TIGR02411 76 --------------------PLGSPLTISLPIA---TSKNK-ELV--LNISFSTTPKC-TAL----QWLTPEQTSGK--K 122 (601)
T ss_pred --------------------CCCCeEEEEeCCc---cCCCc-eEE--EEEEEeecCCC-cee----EEecccccCCC--C
Confidence 0012477765432 11111 112 22345554322 122 1221 001121 1
Q ss_pred eceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeeEEEEe
Q 002253 174 GNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVA 253 (947)
Q Consensus 174 ~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~yliafaVG 253 (947)
.++++|||||.+||+||||+|+|+.||||+++|++| ++|++||.++.+. .++..+++|..++|||+|++||+||
T Consensus 123 ~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~~~~----~~~~~~~~F~~t~pmptYLia~avG 196 (601)
T TIGR02411 123 HPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPDGET----SNDPGKYLFKQKVPIPAYLIALASG 196 (601)
T ss_pred CCEEEECCcccchheeeeecCCcccceEEEEEEeeC--cceeccCCccccc----cCCCceEEEEeCCCcchhhheeeec
Confidence 368899999999999999999999999999999999 9999999876543 2345688999999999999999999
Q ss_pred cceeeecCCCCeEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccEEEeC-CCCcccccccccchhhcccc
Q 002253 254 PFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIFSSQ 331 (947)
Q Consensus 254 ~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gagl~~~~~~ 331 (947)
+|+..+. +..+++|+.|+..+.+++.+. .+.++++++|+++| ||||+||++|++| ++..++|+|+ |+++.+..
T Consensus 197 ~~~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~--~ltf~~~~ 271 (601)
T TIGR02411 197 DLASAPI--GPRSSVYSEPEQLEKCQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENP--NLTFATPT 271 (601)
T ss_pred cceeccc--CCceEEEccchhHHHHHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCcccccccccc--cceeeccc
Confidence 9997643 567899999998888888888 89999999998755 9999999999885 4446789998 55544666
Q ss_pred cccCccccchhhHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHH---hhcchhhc
Q 002253 332 ILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK---ANCAVCKA 408 (947)
Q Consensus 332 lL~~~~~~d~~~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~---~~~~~~~~ 408 (947)
+|.+.. ....+||||||||||||+||++||+|+|||||||+|++.+++++.+|.....+.... .....+..
T Consensus 272 ll~~d~------s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~ 345 (601)
T TIGR02411 272 LIAGDR------SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESVKT 345 (601)
T ss_pred cccCCh------hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHHHh
Confidence 765432 123589999999999999999999999999999999999999999998765333211 11111100
Q ss_pred ccCCCcccCCCCccccCCCCcccccccchhhccHHHHHHHHHHHhC-hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 002253 409 DDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFA 487 (947)
Q Consensus 409 ~~~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~ 487 (947)
.....+.... ..++...++...|+.+.|.||+++|||||+.|| ++.|+++|+.|++++++++ +++++|.+.+
T Consensus 346 -~~~~~~~~~~--~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s----~~t~df~~~l 418 (601)
T TIGR02411 346 -LGEDPEYTKL--VVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKS----LDTYQFKDAL 418 (601)
T ss_pred -hcCCCCCCcc--cccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCC----CCHHHHHHHH
Confidence 0000111100 111222245668999999999999999999999 9999999999999999995 7999999877
Q ss_pred HHhcCC--CcccHHHH-HHhhhcCCCccEEEEEEE
Q 002253 488 NKVGNL--ERPFLKEF-FPRWVGTCGCPVLRMGFS 519 (947)
Q Consensus 488 e~v~~~--~~~dl~~f-~~~Wv~~~G~P~l~V~~~ 519 (947)
++.... .+.+++.+ |++|++++|+|.+.+.+.
T Consensus 419 ~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 419 YEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 654311 12457766 999999999999877653
No 7
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-61 Score=591.63 Aligned_cols=528 Identities=20% Similarity=0.263 Sum_probs=388.5
Q ss_pred EEEEEEEEEeccCcEEEEEEEEEEEc--CC-cceEEEeccCceeeEEEEcCeeeee--eeCCCCcccchhhhhccccCCC
Q 002253 22 RHQKLCLSIDMEKHQIYGYTELEIAV--PD-IGIVGLHAENLGIESVLVDGEPTEF--EYYPHNHQNVENEKRWRSMVSS 96 (947)
Q Consensus 22 ~hy~l~L~id~~~~~~~G~v~I~i~~--~~-~~~I~L~a~~l~I~~V~v~g~~~~f--~~~~~~~~~~~~~~~~~~~~~~ 96 (947)
.|..|++++++++..|.|.++|++.. .+ ...|.||+++|+|.+|++||.+.+. .+......+.. .
T Consensus 25 ~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~~~~~~~~~~~~~~i~~----------~ 94 (859)
T COG0308 25 YDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKALTAWYRLDGDALTITV----------A 94 (859)
T ss_pred cceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCccccccccccCccceeee----------c
Confidence 44444445555568999999999964 32 3349999999999999999986543 22221000000 0
Q ss_pred CCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccC-C-ccEEEEEEEEEecCCcceEeee
Q 002253 97 PSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPK-Q-NVKLVRIDYWVEKVEVGIHFDG 174 (947)
Q Consensus 97 ~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~-~-~~~~~~i~y~~~~~~~G~~f~~ 174 (947)
+. .....+....+.|. +.+.+... . -.|+++ ... .+ .
T Consensus 95 ~~-----------~~~~~~~~~~l~i~--------------------~~~~~~~s~~~~~Gly~----~~~--~~----~ 133 (859)
T COG0308 95 PP-----------IPERSERPFTLAIT--------------------YEFTGPVSNDTLEGLYR----SGY--GG----K 133 (859)
T ss_pred cc-----------cccccCCCccEEEE--------------------EEecccccCccccceee----cCC--CC----C
Confidence 00 00000011122221 12222111 0 112222 111 11 3
Q ss_pred ceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeeEEEEec
Q 002253 175 NALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAP 254 (947)
Q Consensus 175 ~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~yliafaVG~ 254 (947)
.+++||||+.+||+||||+|+|+.|+||+++|++++++++||||.++.... ..+++++++|..++|||+|++++++|+
T Consensus 134 ~~~~TQ~Ea~~aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~~~~~--~~~g~~~~~f~~~~~mptYL~al~~G~ 211 (859)
T COG0308 134 PYLITQCEAEGARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLIDGGT--LVDGRKIVKFEDTPPMPTYLFALVAGD 211 (859)
T ss_pred eeEEeecccCCCceeeecCCCCCCcceeEEEEEecCcceeeecCCcccccc--ccCCcEEEEEcCCCCcchHhhheeeec
Confidence 579999999999999999999999999999999999999999999987653 335689999999999999999999999
Q ss_pred ceeeecCC-----CCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhcc
Q 002253 255 FEVLPDHH-----QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFS 329 (947)
Q Consensus 255 F~~~~~~~-----~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~~ 329 (947)
|+++++.. ..++.+|+.|+....++++++.+.++++|||++||.+||+++ .+|+||++..++|+|+ |++++.
T Consensus 212 ~~~~~~~~~~~~~~v~l~iy~~~g~~~~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~--Gl~tf~ 288 (859)
T COG0308 212 LEVFRDKFDTRSRDVPLEIYVPPGVLDRAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENW--GLVTFR 288 (859)
T ss_pred ceeeeeeeccCCCCeeEEEEecCcchhhhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCcccccc--ceeEEe
Confidence 99987765 578999999999999999999999999999999999999999 9999998888999999 678884
Q ss_pred -cccccCcc-ccchhhH-HHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHHhhcchh
Q 002253 330 -SQILYDEK-VIDQAID-TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVC 406 (947)
Q Consensus 330 -~~lL~~~~-~~d~~~~-~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~~~~~~~ 406 (947)
..+|.++. ..+..+. ...+++||+|||||||+||++||+|+|||||||+|++..+...+.|....++.. +.
T Consensus 289 ~~~ll~~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~------~~ 362 (859)
T COG0308 289 EKYLLADPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWED------FR 362 (859)
T ss_pred eeEEeeCcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHH------HH
Confidence 45777754 3444332 345999999999999999999999999999999999999999998833222222 21
Q ss_pred hcccCCCcccCCCCccccC----C-CCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 002253 407 KADDSGATALSSSASCKDL----Y-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTK 481 (947)
Q Consensus 407 ~~~~~~~~~l~~~~~~~~l----~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~ 481 (947)
......++..|+.+..+++ + +.++...|+.++|.||+.|+|||+..+|++.|+++|+.|+++|.+++ .+++
T Consensus 363 ~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~----~~~~ 438 (859)
T COG0308 363 TLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGN----ATTM 438 (859)
T ss_pred HHhhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCC----CCHH
Confidence 1111112333333333333 2 35677889999999999999999999999999999999999999996 6899
Q ss_pred HHHHHHHHhcCCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCCCCCCCc
Q 002253 482 EFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGW 561 (947)
Q Consensus 482 ~F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (947)
+|.+..+.++ |+|+.++|++|+.++|+|++.|+.+++. .+.|+|+|+.... ......|
T Consensus 439 Dl~~a~~~~s---g~dl~~~~~~w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----------------~~~~~~~ 496 (859)
T COG0308 439 DLWKALEDAS---GKDLSAFFESWLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----------------QEEKRPW 496 (859)
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHhCCCCCceeeeeeccc---cEEEEEEEeccCC----------------CccCcee
Confidence 9999999998 5799999999999999999999998874 5668888875431 0123479
Q ss_pred ceeEEEEEeccCCcccccccccCCCcceEEEeeeccchhhhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCceEEEe
Q 002253 562 PGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRA 641 (947)
Q Consensus 562 ~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiri 641 (947)
+.|+.+...+.+| .+ ++.+.++.. .+.+. ......++-+
T Consensus 497 ~iPl~~~~~~~~~--~~-~~~~~~~~~-t~~~~-------------------------------------~~~~~~~~~~ 535 (859)
T COG0308 497 PIPLAIKLLDGGG--VK-VLLLTEGEQ-TVTFE-------------------------------------LVGIPPFPSL 535 (859)
T ss_pred eeccEEEecCCCC--ce-eeeeeccce-EEEEe-------------------------------------cccCCcccee
Confidence 9999999887766 11 111111111 11110 0112246667
Q ss_pred cCCCceeeEeeccCchhHHHHHHhhcCChHHHHHHHHHHHc
Q 002253 642 DPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (947)
Q Consensus 642 Dpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (947)
+..++......+..++..+..++++++ +.+|+..+..
T Consensus 536 ~~~~~~~~~~~~~y~~~~l~~~~~~~~----~~~~~~~~~~ 572 (859)
T COG0308 536 KVNDSAPVFYRVDYSDQSLSKLLQHDP----RLEAAQRLAL 572 (859)
T ss_pred eccCCccceEEEecCHHHHHHHHhhhh----hhhHHHHHhh
Confidence 788888889999999999999999988 6666666553
No 8
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=4.6e-56 Score=511.20 Aligned_cols=372 Identities=23% Similarity=0.351 Sum_probs=277.0
Q ss_pred CCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeee-------eeeCCCCcccchh
Q 002253 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTE-------FEYYPHNHQNVEN 86 (947)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~-------f~~~~~~~~~~~~ 86 (947)
....+.|.||+|.|++|+++..|+|.++|++.+ .+++.|.||+.+++|.+|.++|.... +.++..
T Consensus 2 Lp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~~~~~~~~~~~~~~------- 74 (390)
T PF01433_consen 2 LPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSSSEYKSSPFEYDDE------- 74 (390)
T ss_dssp --TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECSCTECCEEEEEECC-------
T ss_pred CCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCccccccccccceeeccc-------
Confidence 356799999999999999999999999999987 57899999999999999999987654 222211
Q ss_pred hhhccccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCC-ccEEEEEEEEEec
Q 002253 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEK 165 (947)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~~ 165 (947)
...|.|.++.+ +..+. .+++ .+.|+|.+.. ..|+++..|....
T Consensus 75 ------------------------------~~~l~I~l~~~---l~~g~-~~~L--~I~y~g~~~~~~~G~~~~~y~~~~ 118 (390)
T PF01433_consen 75 ------------------------------NEKLTITLPKP---LPPGS-NYTL--RIEYSGKISDDSSGLYRSSYTDQT 118 (390)
T ss_dssp ------------------------------BTEEEEEEEEE---CSTTE-EEEE--EEEEEEECBSSSSEEEEEEEE-GT
T ss_pred ------------------------------cceeehhhhhh---cccCc-EEEE--EEEEeecccccccccccceeeccc
Confidence 12366655322 22221 1333 3567776665 4578887776511
Q ss_pred CCcceEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcc
Q 002253 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (947)
Q Consensus 166 ~~~G~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~ 245 (947)
.| ...++++|++||.+||+||||+|+|++||+|+++|++|++++|+|||++.++... ++++++++|..++|||+
T Consensus 119 --~~--~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~~~~~~--~~~~~~~~f~~t~p~~~ 192 (390)
T PF01433_consen 119 --NG--NTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLEEEESN--DDGWKTTTFETTPPMPT 192 (390)
T ss_dssp --SS--SETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEEEEEEE--TTTEEEEEEEEEEEEEG
T ss_pred --cc--ccCCceeecccccccceeeeeeccCCccceEEEeeeccccceeeccccccccccc--cccceeEeeecccccCc
Confidence 12 1257899999999999999999999999999999999999999999999887753 36799999999999999
Q ss_pred eeeEEEEecceeeecCCC--CeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccccccc
Q 002253 246 KWITLAVAPFEVLPDHHQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (947)
Q Consensus 246 yliafaVG~F~~~~~~~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (947)
|++||+||+|+.++.... .++++|++|+..+.++++++.+.+++++|+++||.+|||+|+++|++|+...++|+++
T Consensus 193 yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~-- 270 (390)
T PF01433_consen 193 YLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENW-- 270 (390)
T ss_dssp GG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--T--
T ss_pred hhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHHHHHHhhccccceecceeEEEEecccccccccc--
Confidence 999999999999876554 5899999999999999999999999999999999999999999999997556788888
Q ss_pred chhhc-ccccccCccccchh--hHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHH-H
Q 002253 324 AMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRR-Y 399 (947)
Q Consensus 324 gl~~~-~~~lL~~~~~~d~~--~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~-~ 399 (947)
|++++ +..++++++..... .....+||||+|||||||+||++||+|+||+||||+|++.+++++.+|...+.... .
T Consensus 271 g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~ 350 (390)
T PF01433_consen 271 GLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLV 350 (390)
T ss_dssp TEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHH
T ss_pred ccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhh
Confidence 67777 56688887654432 23456899999999999999999999999999999999999999999954432111 1
Q ss_pred HhhcchhhcccC-CCcccCCCCccccC-CCCcccccccchhhccH
Q 002253 400 KANCAVCKADDS-GATALSSSASCKDL-YGTQCIGIFGKIRSCKS 442 (947)
Q Consensus 400 ~~~~~~~~~~~~-~~~~l~~~~~~~~l-~~~~~~~~f~~i~Y~Kg 442 (947)
......+..|.. ...++. .++ ...++...|+.+.|.||
T Consensus 351 ~~~~~~~~~d~~~~~~pl~-----~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 351 QEMQRALREDALPNSHPLS-----SEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHHHHHHHHHTSTTCCCSS-----SSSSSESCGGGGSSHHHHHHH
T ss_pred hhHHHHHHHhhcCCCcceE-----eCCCCCCChHHhcCccccCCC
Confidence 111111122221 111221 122 23455678999999998
No 9
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-49 Score=435.92 Aligned_cols=442 Identities=19% Similarity=0.266 Sum_probs=326.5
Q ss_pred CCCCCCCCCcCCCC-CC-CCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeeeeeeC
Q 002253 1 MAKPRKPKNEETKV-EN-SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYY 77 (947)
Q Consensus 1 ~~~~~~~~~~~p~~-~~-~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~ 77 (947)
||-+| +|.+ .| ..+.+.|+.|.+.+||+.+.+.|++.+++++ .+...|.||.+.+.|.+|++||.+.+|...
T Consensus 1 m~~~~-----Dp~s~sn~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~~~~i~ 75 (613)
T KOG1047|consen 1 MAPRR-----DPSSASNYRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEPPFRIG 75 (613)
T ss_pred CCCCC-----CcccccChhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCCCCccC
Confidence 66666 5544 33 6788999999999999999999999999986 333349999999999999999998877654
Q ss_pred CCCcccchhhhhccccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEE
Q 002253 78 PHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLV 157 (947)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 157 (947)
.. +.. .+..-.+.+.. + ..+. .....+
T Consensus 76 ~~-~~~------------------------------~g~~~~~~l~~--~--~~~a------------------~~~~~l 102 (613)
T KOG1047|consen 76 FR-QPF------------------------------LGSGQKLVLPA--P--SSKA------------------GERLQL 102 (613)
T ss_pred cc-cCC------------------------------CCCceEEEecc--c--cccc------------------cCceEE
Confidence 21 000 01001133311 1 1110 111234
Q ss_pred EEEEEEecCCcceEe---------eeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccC
Q 002253 158 RIDYWVEKVEVGIHF---------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKD 228 (947)
Q Consensus 158 ~i~y~~~~~~~G~~f---------~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~ 228 (947)
.|.|......+|+++ ..+|++||||...||..|||+|.|+.|.||+.+|.+|.++++++++...++. +.
T Consensus 103 ~i~y~Ts~~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~~~~--~~ 180 (613)
T KOG1047|consen 103 LIWYETSPSATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPAGEK--PG 180 (613)
T ss_pred EEEEeccCCcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCcceeeeeccccccC--CC
Confidence 555554433445554 2478999999999999999999999999999999999999999999875543 24
Q ss_pred CCCceEEEEecCCCCcceeeEEEEecceeeecCCCCeEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccE
Q 002253 229 DPPRKTYVYRLDVPVSAKWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQ 307 (947)
Q Consensus 229 ~~~~~t~~F~~t~p~s~yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~ 307 (947)
..++.+++|++..|+++|++||++|+.+..+. +..-++|+.|...+.....+. .+.++|.--|+.+| ||+|+.||+
T Consensus 181 ~~~~~~f~f~q~~pIP~YLiai~~G~L~s~eI--gpRs~VwaEp~~~~a~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDl 257 (613)
T KOG1047|consen 181 SNGRAIFRFKQEVPIPSYLIAIAVGDLESREI--GPRSRVWAEPCLLDACQEEFAGETEDFLKAAEKLFG-PYVWGRYDL 257 (613)
T ss_pred CCCcceEEEEeccCchhhhHHHhhcccccccc--CCccceecchhhhHHHHHHHHhhhHHHHHHHHHHcC-CcccccceE
Confidence 55688999999999999999999999876544 455789999999988888887 89999999999998 999999999
Q ss_pred EEeCC-CCcccccccccchhhcccccccCccccchhhHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHH
Q 002253 308 VFLAP-EMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIK 386 (947)
Q Consensus 308 V~vp~-~~~~~~~~~gagl~~~~~~lL~~~~~~d~~~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~ 386 (947)
+++|+ +..++|+|. .|+.....||-+.+. ...+|||||||-||||+||..+|.+.||||||++|++..++.
T Consensus 258 lvlPpSFP~gGMENP--cltF~TpTllaGDrs------l~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g 329 (613)
T KOG1047|consen 258 LVLPPSFPFGGMENP--CLTFVTPTLLAGDRS------LVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVG 329 (613)
T ss_pred EEecCCCCcccccCc--ceeeecchhhcCCcc------hhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhh
Confidence 99985 335667766 344446667765442 245899999999999999999999999999999999999999
Q ss_pred HHhCCchHHHHHHHhhcchhhc-ccCCCcccCCCCccccCCCCcccccccchhhccHHHHHHHHHHHhC-hHHHHHHHHH
Q 002253 387 KFLGNNEARYRRYKANCAVCKA-DDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQN 464 (947)
Q Consensus 387 ~~~G~~e~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~ 464 (947)
.++|.....++....+...-.. +..+.. ........++.+.++...|+.+-|.||..+|+.||+.+| ++.|...||+
T Consensus 330 ~~~g~~~~~f~a~~gw~~L~~~~d~~g~~-~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~ 408 (613)
T KOG1047|consen 330 RLYGEAYRQFEALIGWRELRPSMDLFGET-SEFTKLVVKLENVDPDDAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRA 408 (613)
T ss_pred hhcchhHHHHHHhcChhhhhhHHHhcCCC-cccchhhhhccCCChHHhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHH
Confidence 9999887554432222211000 111110 000011123333456678999999999999999999999 5788999999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHh-cCCCccc-HHH-HHHhhhcCCCccEEEEEE
Q 002253 465 IISRAQGASPVRTLSTKEFRHFANKV-GNLERPF-LKE-FFPRWVGTCGCPVLRMGF 518 (947)
Q Consensus 465 yl~~~~~~~~~~~~st~~F~~~~e~v-~~~~~~d-l~~-f~~~Wv~~~G~P~l~V~~ 518 (947)
|+.+++++ ++.+++|..++-+. .+....+ +.. -|+.|++++|.|...-.+
T Consensus 409 Yv~kfa~k----sI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~~ 461 (613)
T KOG1047|consen 409 YVHKFAFK----SILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPNF 461 (613)
T ss_pred HHHHhccc----eecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCCc
Confidence 99999998 58999998776443 3211122 223 489999999999865433
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=98.82 E-value=3.6e-09 Score=101.23 Aligned_cols=102 Identities=21% Similarity=0.347 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHHhhcchhhcccCCCcccCCCCccccC
Q 002253 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDL 425 (947)
Q Consensus 346 ~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 425 (947)
..+++||++|+|++..+........|++||+|+|++...- ... ..... ..+... ...++ .++
T Consensus 26 ~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~~------~~~-~~~~~---~~~~~~--~~~~~------~~l 87 (128)
T PF13485_consen 26 DRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRIE------DEF-DEDLK---QAIESG--SLPPL------EPL 87 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCcc------chh-HHHHH---HHHHcC--CCCCh------HHH
Confidence 4689999999999999987788889999999999983310 010 01100 011111 01111 111
Q ss_pred CC-CcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHH
Q 002253 426 YG-TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNI 465 (947)
Q Consensus 426 ~~-~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~y 465 (947)
.. ......+....|.+|.+++++|+...|++.|.+.|+.|
T Consensus 88 ~~~~~~~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 88 NSSFDFSWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 10 00122344567999999999999999999999999875
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=98.65 E-value=1e-06 Score=99.30 Aligned_cols=226 Identities=14% Similarity=0.138 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc-ccccccCcccc-chh-hHH-HHHHHHH
Q 002253 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVI-DQA-IDT-SIKLSFA 352 (947)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~-d~~-~~~-~~~laHE 352 (947)
..+...+.++++++-=.+.|| +-||.+|.+++--. -..++||.-. |+.+.++.... ++. +.. ..+++||
T Consensus 182 d~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s------~q~~GGlEH~~St~l~~~r~~~~~~~ky~~~l~llsHE 254 (558)
T COG3975 182 DKERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLS------DQIYGGLEHRRSTALIYDRFGFTDQDKYQDLLGLLSHE 254 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEec------CCCCCCceeccccccccccccccchhHHHHHHHHHHHH
Confidence 445556667777777777888 68999987765321 1233377766 55566665333 222 222 5689999
Q ss_pred HHHhhhccccCCCC-C----------ChhHHHHHHHHHHHHHHHHHHhCCchHHHHH--HHhhcchhhcccCCCcccCCC
Q 002253 353 LARQWFGVYITPEL-P----------NDEWLLDGLAGFLTDSFIKKFLGNNEARYRR--YKANCAVCKADDSGATALSSS 419 (947)
Q Consensus 353 LAHQWFG~lVt~~~-w----------~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~--~~~~~~~~~~~~~~~~~l~~~ 419 (947)
..|-|-+-.|-|.. | .-+|+.|||+.|...++.-..---....|-. -+....+.........++..
T Consensus 255 yfH~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsgl~~~~~~l~~la~tl~~~~~~~gRl~~~laE- 333 (558)
T COG3975 255 YFHAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSGLISLETYLNYLAKTLARYLNTPGRLRQSLAE- 333 (558)
T ss_pred HHHhccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhcCCceecccccc-
Confidence 99999998887764 2 4689999999999887754431111111111 11122221110000111111
Q ss_pred CccccC----CCCcccccccchh--hccHHHHHHHHHHHh-----ChHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH
Q 002253 420 ASCKDL----YGTQCIGIFGKIR--SCKSVAILQMLEKQM-----GSNFFRKILQNIISRAQGASPVRTLSTKEFRHFAN 488 (947)
Q Consensus 420 ~~~~~l----~~~~~~~~f~~i~--Y~Kg~lVL~mLe~~l-----G~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e 488 (947)
++.+. +..+.. .-+.+. |.||++|--+|+-.| |+.++..+++.+...+... +..++.++++.+++
T Consensus 334 -sS~~awik~yr~d~n-s~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~--~~~~t~e~v~av~~ 409 (558)
T COG3975 334 -SSFDAWIKYYRPDEN-SPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRA--ERGYTPEDVQAVLE 409 (558)
T ss_pred -cccchhHHhhccccc-ccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcC--ccCCCHHHHHHHHH
Confidence 11110 111000 001122 899999988888887 5678999999999887663 34579999999999
Q ss_pred HhcCCCcccHHHHHHhhhcCCCccEEEEE
Q 002253 489 KVGNLERPFLKEFFPRWVGTCGCPVLRMG 517 (947)
Q Consensus 489 ~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~ 517 (947)
.+. |.|+..||++.+.+.--|.|.--
T Consensus 410 ~~t---g~dl~~f~~~~i~~~~~~~l~~~ 435 (558)
T COG3975 410 NVT---GLDLATFFDEYIEGTEPPPLNPL 435 (558)
T ss_pred hhc---cccHHHHHHHHhhcCCCCChhhh
Confidence 987 46899999999999988877543
No 12
>PRK09687 putative lyase; Provisional
Probab=97.43 E-value=0.007 Score=66.33 Aligned_cols=217 Identities=16% Similarity=0.067 Sum_probs=139.9
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHcCCCCc---hhHHhHHHhh-hccCcchhHHHHHHHHHHHhhcccccccc--cHHH
Q 002253 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLS---FNVVNTLNNF-LSDSKAFWRVRIEAAYALANTASEETDWA--GLLH 730 (947)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s---~~~~~~L~~~-l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~--g~~~ 730 (947)
.+..+.+|.++.|...|..|+.+|.....+. ..+...|... +.|+ =+.||..|+.+|+........|. .+..
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~~~~~~~a~~~ 132 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK--SACVRASAINATGHRCKKNPLYSPKIVEQ 132 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC--CHHHHHHHHHHHhcccccccccchHHHHH
Confidence 4566677888999999999999999864321 2355667666 4443 58999999999999876554441 1223
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHH
Q 002253 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (947)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li 810 (947)
|..... ++ +-.|+.+...||+.+++ +++...|+.+|+-+ |..-+...+
T Consensus 133 l~~~~~----D~--------------~~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~--------~~~VR~~A~ 180 (280)
T PRK09687 133 SQITAF----DK--------------STNVRFAVAFALSVIND------EAAIPLLINLLKDP--------NGDVRNWAA 180 (280)
T ss_pred HHHHhh----CC--------------CHHHHHHHHHHHhccCC------HHHHHHHHHHhcCC--------CHHHHHHHH
Confidence 322222 21 12488999999987753 56899999999822 235889999
Q ss_pred HHhhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHH
Q 002253 811 QSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQV 890 (947)
Q Consensus 811 ~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 890 (947)
.|||.+.... ..++..+...+ ...+..|-.+|+.+|.+++ ..--++.+... ...+ .+
T Consensus 181 ~aLg~~~~~~------~~~~~~L~~~L------~D~~~~VR~~A~~aLg~~~----~~~av~~Li~~----L~~~---~~ 237 (280)
T PRK09687 181 FALNSNKYDN------PDIREAFVAML------QDKNEEIRIEAIIGLALRK----DKRVLSVLIKE----LKKG---TV 237 (280)
T ss_pred HHHhcCCCCC------HHHHHHHHHHh------cCCChHHHHHHHHHHHccC----ChhHHHHHHHH----HcCC---ch
Confidence 9999874321 12344444444 3447788888989887752 11122333322 3333 38
Q ss_pred HHHHHHHhhcccccccChhhHHHHHHHHhc--cCCCccccccccchh
Q 002253 891 RVEASRALLDLEFHCNGIDSALSLFIKSVE--EEPSLRGEIGYSCYE 935 (947)
Q Consensus 891 r~~a~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~r~~~~~~~~~ 935 (947)
|+.|.++|=.++- ..++-.+...++ .|+.++.++.+.|++
T Consensus 238 ~~~a~~ALg~ig~-----~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 238 GDLIIEAAGELGD-----KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHHhcCC-----HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 9999999998873 245666666564 466667777666653
No 13
>PRK09687 putative lyase; Provisional
Probab=97.42 E-value=0.0052 Score=67.34 Aligned_cols=177 Identities=18% Similarity=0.113 Sum_probs=119.8
Q ss_pred HHhhcCChHHHHHHHHHHHcCCC----CchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhc
Q 002253 663 QLEKDGDVVAQAQAIAALEALPH----LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (947)
Q Consensus 663 QL~~drdv~aq~eAi~~l~~~~~----~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~ 738 (947)
-+.+|+|..-|..|+.+|+.... .+..+...|...+.|+ .++||..|+.+|+++.+++ .+..|+++.+.
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~~----ai~~L~~~L~d- 170 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDEA----AIPLLINLLKD- 170 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCHH----HHHHHHHHhcC-
Confidence 34789999999999999998632 2234566777888886 7899999999999888665 37777776653
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc
Q 002253 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (947)
Q Consensus 739 ~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (947)
+ ++.|+.....||+.++ ...+++...|+.+|. |. |...+...+.+||.+..
T Consensus 171 ----------~-------~~~VR~~A~~aLg~~~----~~~~~~~~~L~~~L~--D~------~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 171 ----------P-------NGDVRNWAAFALNSNK----YDNPDIREAFVAMLQ--DK------NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ----------C-------CHHHHHHHHHHHhcCC----CCCHHHHHHHHHHhc--CC------ChHHHHHHHHHHHccCC
Confidence 1 1348999999999882 235578899999993 22 55679999999998643
Q ss_pred ccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHh
Q 002253 819 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRAL 898 (947)
Q Consensus 819 ~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l 898 (947)
..++.-|.++++-+. +.+.+..+|.+++-. --+..+..+...+.+ ..||.+|.++|
T Consensus 222 --------~~av~~Li~~L~~~~--------~~~~a~~ALg~ig~~----~a~p~L~~l~~~~~d----~~v~~~a~~a~ 277 (280)
T PRK09687 222 --------KRVLSVLIKELKKGT--------VGDLIIEAAGELGDK----TLLPVLDTLLYKFDD----NEIITKAIDKL 277 (280)
T ss_pred --------hhHHHHHHHHHcCCc--------hHHHHHHHHHhcCCH----hHHHHHHHHHhhCCC----hhHHHHHHHHH
Confidence 134444444444332 346677777765321 112223343333333 57999999887
Q ss_pred h
Q 002253 899 L 899 (947)
Q Consensus 899 ~ 899 (947)
=
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.83 E-value=0.32 Score=62.40 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHh
Q 002253 759 FVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQ 838 (947)
Q Consensus 759 ~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~ 838 (947)
.|+.+...+|+.+++... .+...|+.+++-- |..-+++++.+|+.+.-+. .++..+...+.
T Consensus 757 ~VR~~aa~aL~~~~~~~~----~~~~~L~~ll~D~--------d~~VR~aA~~aLg~~g~~~-------~~~~~l~~aL~ 817 (897)
T PRK13800 757 EVRIAVAKGLATLGAGGA----PAGDAVRALTGDP--------DPLVRAAALAALAELGCPP-------DDVAAATAALR 817 (897)
T ss_pred HHHHHHHHHHHHhccccc----hhHHHHHHHhcCC--------CHHHHHHHHHHHHhcCCcc-------hhHHHHHHHhc
Confidence 567777777777765422 2245566666511 3668888888888764321 11122333332
Q ss_pred ccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccccccChhhHHHHHHHH
Q 002253 839 FDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKS 918 (947)
Q Consensus 839 ~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~ 918 (947)
=+ .-.|-.+++++|.++. ..-..+.+..++ .+ ....||.+|.++|-.+. +...+...+...
T Consensus 818 d~------d~~VR~~Aa~aL~~l~----~~~a~~~L~~~L---~D--~~~~VR~~A~~aL~~~~----~~~~a~~~L~~a 878 (897)
T PRK13800 818 AS------AWQVRQGAARALAGAA----ADVAVPALVEAL---TD--PHLDVRKAAVLALTRWP----GDPAARDALTTA 878 (897)
T ss_pred CC------ChHHHHHHHHHHHhcc----ccchHHHHHHHh---cC--CCHHHHHHHHHHHhccC----CCHHHHHHHHHH
Confidence 22 2356677888776642 122223333332 22 34789999999998862 223344444333
Q ss_pred h-ccCCCcccc
Q 002253 919 V-EEEPSLRGE 928 (947)
Q Consensus 919 ~-~~~~~~r~~ 928 (947)
+ ++|+.+|..
T Consensus 879 l~D~d~~Vr~~ 889 (897)
T PRK13800 879 LTDSDADVRAY 889 (897)
T ss_pred HhCCCHHHHHH
Confidence 3 556666644
No 15
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.71 E-value=0.049 Score=48.12 Aligned_cols=71 Identities=28% Similarity=0.295 Sum_probs=58.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 002253 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (947)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (947)
..+.+|..|+|...|..|++.|++.. +..+...|.+.+.|+ .+.||.+|+.+|+++.+++ ..+.|.+++++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~----~~~~L~~~l~~ 73 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DPEAIPALIELLKDE--DPMVRRAAARALGRIGDPE----AIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHH----THHHHHHHHTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHH----HHHHHHHHHcC
Confidence 35677888999999999999999864 446788999999774 7899999999999997654 47778777664
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.07 E-value=0.76 Score=59.00 Aligned_cols=218 Identities=18% Similarity=0.162 Sum_probs=124.8
Q ss_pred EeeccCchhHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHH
Q 002253 650 EIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLL 729 (947)
Q Consensus 650 ~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~ 729 (947)
-+.+..|.-.++.++..|.|..-|..|+..|.+... ..+...|.+.|.|+ ...||..|+.+|+++...... ..
T Consensus 615 ~~~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~~---~~ 687 (897)
T PRK13800 615 VLALDAPSVAELAPYLADPDPGVRRTAVAVLTETTP--PGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLPP---AP 687 (897)
T ss_pred HHhccchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc--hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccCc---hH
Confidence 334466654455555689999999999999998643 34678899999875 888999999999988532111 24
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHH
Q 002253 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAAL 809 (947)
Q Consensus 730 ~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~l 809 (947)
.|+++++. .+..|+.+...+|+.++..+ + ..|+..|+ =.|..-+.+.
T Consensus 688 ~L~~~L~~------------------~d~~VR~~A~~aL~~~~~~~---~----~~l~~~L~--------D~d~~VR~~A 734 (897)
T PRK13800 688 ALRDHLGS------------------PDPVVRAAALDVLRALRAGD---A----ALFAAALG--------DPDHRVRIEA 734 (897)
T ss_pred HHHHHhcC------------------CCHHHHHHHHHHHHhhccCC---H----HHHHHHhc--------CCCHHHHHHH
Confidence 55555542 12357777777777765321 1 23445554 1233466667
Q ss_pred HHHhhcccc--------ccccHHH---HHH-----------HHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcC
Q 002253 810 VQSVGELEF--------GQQSILF---LSS-----------LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSG 867 (947)
Q Consensus 810 i~al~~~~~--------~~~~~~~---~~~-----------~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~ 867 (947)
+.+|+.+.- ..++... ... .+..+.++++ .-.-.|-.+++.+|.++ |
T Consensus 735 v~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~------D~d~~VR~aA~~aLg~~-----g 803 (897)
T PRK13800 735 VRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG------DPDPLVRAAALAALAEL-----G 803 (897)
T ss_pred HHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc------CCCHHHHHHHHHHHHhc-----C
Confidence 777765321 0111000 000 1222232222 22356777888877764 2
Q ss_pred CCc-h-hhhhhhhcccCCCCchHHHHHHHHHHhhcccccccChhhHHHHHHHHh-ccCCCcccc
Q 002253 868 FIS-L-DQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV-EEEPSLRGE 928 (947)
Q Consensus 868 ~~~-~-~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~ 928 (947)
.-+ . ..+... ..+ ..+.||.+|.++|-.++- ..++..++..+ ++++.+|..
T Consensus 804 ~~~~~~~~l~~a---L~d--~d~~VR~~Aa~aL~~l~~-----~~a~~~L~~~L~D~~~~VR~~ 857 (897)
T PRK13800 804 CPPDDVAAATAA---LRA--SAWQVRQGAARALAGAAA-----DVAVPALVEALTDPHLDVRKA 857 (897)
T ss_pred CcchhHHHHHHH---hcC--CChHHHHHHHHHHHhccc-----cchHHHHHHHhcCCCHHHHHH
Confidence 222 1 222222 222 247899999999987652 23455555555 445666655
No 17
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.93 E-value=0.91 Score=52.47 Aligned_cols=195 Identities=13% Similarity=-0.011 Sum_probs=125.7
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 002253 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (947)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (947)
....+..|..|.+-.....|+.+|...... .++..|.++|.|. =-+||.+||.+|++...+.. ...|++..+
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~~--~~~~~L~~~L~d~--~~~vr~aaa~ALg~i~~~~a----~~~L~~~L~ 127 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQEDA--LDLRSVLAVLQAG--PEGLCAGIQAALGWLGGRQA----EPWLEPLLA 127 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccCCh--HHHHHHHHHhcCC--CHHHHHHHHHHHhcCCchHH----HHHHHHHhc
Confidence 466778887778777777888888865432 3478899999886 35699999999998877653 456666665
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 002253 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (947)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (947)
. .-| +|+.++..+++..+ .+ ....|+.+|+ =.|.+.+++.+.+||.+
T Consensus 128 ~-------~~p-----------~vR~aal~al~~r~-~~------~~~~L~~~L~--------d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 128 A-------SEP-----------PGRAIGLAALGAHR-HD------PGPALEAALT--------HEDALVRAAALRALGEL 174 (410)
T ss_pred C-------CCh-----------HHHHHHHHHHHhhc-cC------hHHHHHHHhc--------CCCHHHHHHHHHHHHhh
Confidence 3 122 48888888877633 21 2346777776 23556789999999977
Q ss_pred ccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCc-hhhhhhhhcccCCCCchHHHHHHHH
Q 002253 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEAS 895 (947)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~a~ 895 (947)
.... .+..+... ..+.+..|-.+++.++..+ |.-. .+.+ ...|+..|.+...|.++.
T Consensus 175 ~~~~--------a~~~L~~a------l~d~~~~VR~aA~~al~~l-----G~~~A~~~l---~~~~~~~g~~~~~~l~~~ 232 (410)
T TIGR02270 175 PRRL--------SESTLRLY------LRDSDPEVRFAALEAGLLA-----GSRLAWGVC---RRFQVLEGGPHRQRLLVL 232 (410)
T ss_pred cccc--------chHHHHHH------HcCCCHHHHHHHHHHHHHc-----CCHhHHHHH---HHHHhccCccHHHHHHHH
Confidence 5421 12222222 6788889999999888764 2211 1222 222677787777777776
Q ss_pred HHhhcccccccChhhHHHHHHHHhcc
Q 002253 896 RALLDLEFHCNGIDSALSLFIKSVEE 921 (947)
Q Consensus 896 ~~l~~~~~~~~~~~~~l~~~~~~~~~ 921 (947)
.++. |...++.++...+..
T Consensus 233 lal~-------~~~~a~~~L~~ll~d 251 (410)
T TIGR02270 233 LAVA-------GGPDAQAWLRELLQA 251 (410)
T ss_pred HHhC-------CchhHHHHHHHHhcC
Confidence 6655 223455555544433
No 18
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.50 E-value=2.3 Score=47.78 Aligned_cols=194 Identities=23% Similarity=0.210 Sum_probs=121.4
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 002253 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (947)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (947)
.......| .++|..-+..|...|.... +..++..|.+.+.|..+ +||-.|+.+|++...++. ...|++.+.
T Consensus 45 ~~~~~~~l-~~~~~~vr~~aa~~l~~~~--~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~~~~a----~~~li~~l~ 115 (335)
T COG1413 45 ADELLKLL-EDEDLLVRLSAAVALGELG--SEEAVPLLRELLSDEDP--RVRDAAADALGELGDPEA----VPPLVELLE 115 (335)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHhhhc--hHHHHHHHHHHhcCCCH--HHHHHHHHHHHccCChhH----HHHHHHHHH
Confidence 44444444 5679999999999999864 44678889999999765 999999999999988764 788888877
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCC----CCCchHHHHHHHHHH
Q 002253 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNG----NPYSDVFWLAALVQS 812 (947)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~----N~ysD~~y~a~li~a 812 (947)
+ ++ +++|+.+...||+.+++.+. ..=|+++++-++... ...-+..-+.+.+.+
T Consensus 116 ~---d~--------------~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 116 N---DE--------------NEGVRAAAARALGKLGDERA------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred c---CC--------------cHhHHHHHHHHHHhcCchhh------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 4 22 25689999999999998765 334555554332111 000111356777777
Q ss_pred hhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHH
Q 002253 813 VGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRV 892 (947)
Q Consensus 813 l~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~ 892 (947)
|+...... ....+++.+. -.. ..|-.++..+|.+++ .+...... . +.+ ...+....||.
T Consensus 173 l~~~~~~~----~~~~l~~~l~----~~~------~~vr~~Aa~aL~~~~---~~~~~~~~--~-l~~-~~~~~~~~vr~ 231 (335)
T COG1413 173 LGELGDPE----AIPLLIELLE----DED------ADVRRAAASALGQLG---SENVEAAD--L-LVK-ALSDESLEVRK 231 (335)
T ss_pred HHHcCChh----hhHHHHHHHh----Cch------HHHHHHHHHHHHHhh---cchhhHHH--H-HHH-HhcCCCHHHHH
Confidence 77654321 1122222222 111 155556666666653 22111211 1 122 22355689999
Q ss_pred HHHHHhhcccc
Q 002253 893 EASRALLDLEF 903 (947)
Q Consensus 893 ~a~~~l~~~~~ 903 (947)
+|..+|-.++.
T Consensus 232 ~~~~~l~~~~~ 242 (335)
T COG1413 232 AALLALGEIGD 242 (335)
T ss_pred HHHHHhcccCc
Confidence 99999998875
No 19
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=93.94 E-value=0.37 Score=54.09 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhh--hccccCCC--CCChhHHHHHHHHHHHHHHHHHHh-CCc---hHHHHHHHhhcchhhcccCCCcccC
Q 002253 346 SIKLSFALARQW--FGVYITPE--LPNDEWLLDGLAGFLTDSFIKKFL-GNN---EARYRRYKANCAVCKADDSGATALS 417 (947)
Q Consensus 346 ~~~laHELAHQW--FG~lVt~~--~w~d~WL~EGfA~Y~~~~~~~~~~-G~~---e~~~~~~~~~~~~~~~~~~~~~~l~ 417 (947)
..+||||+-|+= .-+.|... .-.|+|||||+|.-+++++-.+.. |.| ..|+..|... ..... .
T Consensus 140 ~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~s~~~~~~~n~i~d~R~~~y~~~-------~~~~~--~ 210 (366)
T PF10460_consen 140 YSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLYSSKIDPGYNNIRDSRIPYYNNY-------TSGNY--N 210 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHhcCCCcccCccccccHHHHhhc-------cccCC--C
Confidence 347999999984 33334433 346999999999999998765542 111 1233322210 00000 0
Q ss_pred CCCccccCCCCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCCccc
Q 002253 418 SSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPF 497 (947)
Q Consensus 418 ~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v~~~~~~d 497 (947)
+. .....+ .. -.-..|..+.+++.-|.+..|.+.+++.|. +.... -+.+-+..+.+.++ .+..
T Consensus 211 ~~--l~~w~~--~g--~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~----~~~~t-----ds~avl~aa~~~~~--~~~s 273 (366)
T PF10460_consen 211 CS--LTAWSS--FG--DSLASYSSSYSFGAYLYRQYGGDFYKKLLT----NSSST-----DSEAVLDAAIKQAG--PGNS 273 (366)
T ss_pred cc--eeecCC--Cc--cccccchhHHHHHHHHHHHcChHHHHHHHh----cCCCC-----cHHHHHHHHHHhhc--CCCC
Confidence 00 000000 00 011348899999999999999888665554 22111 12233444444444 2457
Q ss_pred HHHHHHhhhcCC
Q 002253 498 LKEFFPRWVGTC 509 (947)
Q Consensus 498 l~~f~~~Wv~~~ 509 (947)
+.++|.+|...-
T Consensus 274 f~~~l~~w~~A~ 285 (366)
T PF10460_consen 274 FGELLRRWGVAL 285 (366)
T ss_pred HHHHHHHHHHHH
Confidence 999999998766
No 20
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=93.42 E-value=0.055 Score=51.62 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhcccc---CCCCCChhHHHHHHHHHHHHHHH
Q 002253 347 IKLSFALARQWFGVYI---TPELPNDEWLLDGLAGFLTDSFI 385 (947)
Q Consensus 347 ~~laHELAHQWFG~lV---t~~~w~d~WL~EGfA~Y~~~~~~ 385 (947)
.+++||-+||=.-|.= -...|- .|+.||||+|++..-+
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P-~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWP-RWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCc-hHHHHhHHHHcCCCcc
Confidence 3699999999765532 122232 7999999999986544
No 21
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=93.22 E-value=1.5 Score=45.54 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCC--CCccEEE--eCCCCccccccccc---chhhcccccccCccc-cchhhHHHHHHHH
Q 002253 280 NTVEFFHNAFSHYETYLDAKFPF--GSYKQVF--LAPEMAVSSSTFGA---AMGIFSSQILYDEKV-IDQAIDTSIKLSF 351 (947)
Q Consensus 280 ~~~~~~~~~l~~~e~~~g~~YP~--~k~~~V~--vp~~~~~~~~~~ga---gl~~~~~~lL~~~~~-~d~~~~~~~~laH 351 (947)
.+...+..+..+..+.|-.+ |. +..+.|. +. ++.+.....|. .-|.+|...+-.... -+...+..-+|.|
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~-~~~~~~v~~Vt~~~~-~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~H 102 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQS-PADRKPVRSVTLILD-DMDGVAYTSGDDDHKEIHFSARYIAKYPADGDVRDEIIGVLYH 102 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCC-CCCCCcccEEEEEEE-CCCeeEEEecCCCccEEEEeHHHHhhcccccchHHHHHHHHHH
Confidence 44455566666666666433 43 2334332 33 33222222220 223335443322211 1223345568999
Q ss_pred HHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHHhhcchhhcccCCCcccCCCCccccCCCCccc
Q 002253 352 ALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSASCKDLYGTQCI 431 (947)
Q Consensus 352 ELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 431 (947)
||+|-|=.+--.. .--||.||+|.|+-.. .|-. ..... .| ...
T Consensus 103 E~~H~~Q~~~~~~---~P~~liEGIADyVRl~-----aG~~----------------~~~w~-----~p----~~~---- 145 (205)
T PF04450_consen 103 EMVHCWQWDGRGT---APGGLIEGIADYVRLK-----AGYA----------------PPHWK-----RP----GGG---- 145 (205)
T ss_pred HHHHHhhcCCCCC---CChhheecHHHHHHHH-----cCCC----------------Ccccc-----CC----CCC----
Confidence 9999775444222 2349999999998321 1100 00000 00 000
Q ss_pred ccccchhhccHHHHHHHHHH-HhChHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCCcccHHHHHHh
Q 002253 432 GIFGKIRSCKSVAILQMLEK-QMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPR 504 (947)
Q Consensus 432 ~~f~~i~Y~Kg~lVL~mLe~-~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v~~~~~~dl~~f~~~ 504 (947)
..++ -.|.-.+.+|.-||. +.|+ .|.+-|++=+.+..+. +...|. .+. |++++++++.
T Consensus 146 ~~wd-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y~------~~~~~~----~l~---G~~v~~LW~e 204 (205)
T PF04450_consen 146 DSWD-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKYS------SDDFWK----ELL---GKPVDELWAE 204 (205)
T ss_pred CCcc-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCCC------cHhHHH----HHH---CcCHHHHHhh
Confidence 0111 237889999999999 6655 4556666666544431 222333 333 4568888764
No 22
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=93.00 E-value=0.042 Score=51.92 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhccccCCCC-----------CChhHHHHHHHHHHHHHHHHHH
Q 002253 347 IKLSFALARQWFGVYITPEL-----------PNDEWLLDGLAGFLTDSFIKKF 388 (947)
Q Consensus 347 ~~laHELAHQWFG~lVt~~~-----------w~d~WL~EGfA~Y~~~~~~~~~ 388 (947)
.++|||.-|.|-|..+.|.. -+.+|+-||++.|++.+++.+.
T Consensus 6 ~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 6 GLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 47999999999987777653 3468999999999999887654
No 23
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.80 E-value=0.84 Score=40.06 Aligned_cols=87 Identities=26% Similarity=0.330 Sum_probs=62.4
Q ss_pred hHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc
Q 002253 692 NTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (947)
Q Consensus 692 ~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~ 771 (947)
..|.+.|.+ ...+.||.+|+.+|+++..++. ++.|+++++. ++ ..|+.+...||+.+
T Consensus 2 ~~L~~~l~~-~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d----~~--------------~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQN-DPDPQVRAEAARALGELGDPEA----IPALIELLKD----ED--------------PMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHT-SSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTS----SS--------------HHHHHHHHHHHHCC
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcC----CC--------------HHHHHHHHHHHHHh
Confidence 356677733 2589999999999997765543 6666666632 21 24899999999998
Q ss_pred cccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhh
Q 002253 772 RAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 814 (947)
Q Consensus 772 r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~ 814 (947)
. .+++.+.|.++++. + +|...+.+.+.|||
T Consensus 59 ~------~~~~~~~L~~~l~~---~----~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 G------DPEAIPALIKLLQD---D----DDEVVREAAAEALG 88 (88)
T ss_dssp H------HHHTHHHHHHHHTC--------SSHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHcC---C----CcHHHHHHHHhhcC
Confidence 5 46789999999883 2 24456788888886
No 24
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=1.1 Score=54.08 Aligned_cols=143 Identities=20% Similarity=0.226 Sum_probs=99.0
Q ss_pred cCCCceeeEeeccCchh-HHHHHHhhcCChHHHHHHHHHHHcC----CC-------CchhHHhHHHhhhccCcchhHHHH
Q 002253 642 DPEMEYLAEIHFNQPVQ-MWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRI 709 (947)
Q Consensus 642 Dpd~e~l~~v~~~qp~~-m~~~QL~~drdv~aq~eAi~~l~~~----~~-------~s~~~~~~L~~~l~d~~~f~~VR~ 709 (947)
|-=.+||+++-+.+++. ..+-|+-...|+..|.-||+.|... |. .++..++-|...|.|.| ==||-
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr--E~IRN 184 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR--EPIRN 184 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh--hhhch
Confidence 34468999998887754 4555666678999999998777642 21 11123556777777764 35899
Q ss_pred HHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccC----CCChHHHHHH
Q 002253 710 EAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAAD----NKSPREAVEF 785 (947)
Q Consensus 710 ~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~----~~~p~~v~~f 785 (947)
+|..-|......-+.-.-+-+.-.+|-.+ ++.|+.+. |..-.++.-|
T Consensus 185 e~iLlL~eL~k~n~~IQKlVAFENaFerL-----------------------------fsIIeeEGg~dGgIVveDCL~l 235 (970)
T KOG0946|consen 185 EAILLLSELVKDNSSIQKLVAFENAFERL-----------------------------FSIIEEEGGLDGGIVVEDCLIL 235 (970)
T ss_pred hHHHHHHHHHccCchHHHHHHHHHHHHHH-----------------------------HHHHHhcCCCCCcchHHHHHHH
Confidence 99988887765433322333334444443 35666654 4678899999
Q ss_pred HHHHhhhcCCCCCCCchHHHHHHHHHHhhc
Q 002253 786 VLQLLKYNDNNGNPYSDVFWLAALVQSVGE 815 (947)
Q Consensus 786 ll~ll~~NdNs~N~ysD~~y~a~li~al~~ 815 (947)
|.+|||+|--..|-|--+-||..|.+-|..
T Consensus 236 l~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 236 LNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred HHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 999999999999999999999999877754
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.79 E-value=2.3 Score=50.98 Aligned_cols=226 Identities=19% Similarity=0.192 Sum_probs=122.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (947)
+...|+ +++-.-|.-|++.|+....+. ......+.+.+.|+.. -||..||.+|.++-....+..... ++....+
T Consensus 84 l~kdl~-~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~ 159 (526)
T PF01602_consen 84 LQKDLN-SPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSP--YVRKKAALALLKIYRKDPDLVEDE-LIPKLKQ 159 (526)
T ss_dssp HHHHHC-SSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHH
T ss_pred HHHhhc-CCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCch--HHHHHHHHHHHHHhccCHHHHHHH-HHHHHhh
Confidence 334443 578889999999999764322 1244457777887654 899999999999875433322111 3333333
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCC--CChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhh
Q 002253 738 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADN--KSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVG 814 (947)
Q Consensus 738 ~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~-r~~~~--~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~ 814 (947)
...+++ .-|+.+-..++..+ .+.+. ..-+...+-|.+++ .-.|.|-...+++.|.
T Consensus 160 lL~d~~--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l--------~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 160 LLSDKD--------------PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL--------SDPDPWLQIKILRLLR 217 (526)
T ss_dssp HTTHSS--------------HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHT
T ss_pred hccCCc--------------chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc--------cccchHHHHHHHHHHH
Confidence 322222 24667777777777 22222 12233344455555 4556677888888888
Q ss_pred ccccccccHHHH--HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCc-----hhhhhhhhcccCCCCch
Q 002253 815 ELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-----LDQVVKLIKPFRDFNTI 887 (947)
Q Consensus 815 ~~~~~~~~~~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 887 (947)
...... .... ..+++.+..+++ |=...|...|.+++..+. ...+ .+.+..++ . ..-
T Consensus 218 ~~~~~~--~~~~~~~~~i~~l~~~l~------s~~~~V~~e~~~~i~~l~----~~~~~~~~~~~~L~~lL----~-s~~ 280 (526)
T PF01602_consen 218 RYAPME--PEDADKNRIIEPLLNLLQ------SSSPSVVYEAIRLIIKLS----PSPELLQKAINPLIKLL----S-SSD 280 (526)
T ss_dssp TSTSSS--HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHH----T-SSS
T ss_pred hcccCC--hhhhhHHHHHHHHHHHhh------ccccHHHHHHHHHHHHhh----cchHHHHhhHHHHHHHh----h-ccc
Confidence 654321 1222 346666666665 334455567777766542 1111 12233332 2 223
Q ss_pred HHHHHHHHHHhhcccccccCh--hhHHHHHHHHhccCCCcccc
Q 002253 888 WQVRVEASRALLDLEFHCNGI--DSALSLFIKSVEEEPSLRGE 928 (947)
Q Consensus 888 ~~vr~~a~~~l~~~~~~~~~~--~~~l~~~~~~~~~~~~~r~~ 928 (947)
..+|..|+++|..+....... ...+.++.-..+.|+++|..
T Consensus 281 ~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~ 323 (526)
T PF01602_consen 281 PNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKK 323 (526)
T ss_dssp HHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHH
T ss_pred chhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHH
Confidence 568888888888875433100 11122222223566677665
No 26
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.70 E-value=0.78 Score=56.44 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=71.9
Q ss_pred CCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHH
Q 002253 776 NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCI 855 (947)
Q Consensus 776 ~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l 855 (947)
..++.++.+.|.+.|+-... ..|..=+-..|+||||+..+. ++..+..++.-+. ..-..+-++|+
T Consensus 481 ~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~LkaLgN~g~~~--------~i~~l~~~i~~~~---~~~~~~R~~Ai 545 (618)
T PF01347_consen 481 RCIIEKYVPYLEQELKEAVS----RGDEEEKIVYLKALGNLGHPE--------SIPVLLPYIEGKE---EVPHFIRVAAI 545 (618)
T ss_dssp SS--GGGTHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHT-GG--------GHHHHHTTSTTSS----S-HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhh----ccCHHHHHHHHHHhhccCCch--------hhHHHHhHhhhcc---ccchHHHHHHH
Confidence 44455566666666661111 234456777889999986532 3455555555554 33345667888
Q ss_pred HHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccccccChhhHHHHHHHHhccCCCc
Q 002253 856 RTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSL 925 (947)
Q Consensus 856 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 925 (947)
.+|++++ ...|....-.++.=|.+.+...+||+||+-.|++ .+-....|+-+...+..||+.
T Consensus 546 ~Alr~~~----~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~----~~P~~~~l~~i~~~l~~E~~~ 607 (618)
T PF01347_consen 546 QALRRLA----KHCPEKVREILLPIFMNTTEDPEVRIAAYLILMR----CNPSPSVLQRIAQSLWNEPSN 607 (618)
T ss_dssp HTTTTGG----GT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH----T---HHHHHHHHHHHTT-S-H
T ss_pred HHHHHHh----hcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCCCHHHHHHHHHHHhhCchH
Confidence 8888652 3445332223334466777788999999988887 323355678888888888864
No 27
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.48 E-value=17 Score=44.34 Aligned_cols=144 Identities=16% Similarity=0.187 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhhccc----cCCCCh----HHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHH
Q 002253 759 FVLEAIPHAVAMVRA----ADNKSP----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLL 830 (947)
Q Consensus 759 ~~~~~i~~a~a~~r~----~~~~~p----~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~ 830 (947)
+|..+..-|++.+-. ....|| .++.+.|.+.|+---+. .|..-+-..|+||||+..+ .++
T Consensus 412 ~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~--------~~i 479 (574)
T smart00638 412 YLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHP--------SSI 479 (574)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCCh--------hHH
Confidence 566666666664322 123355 56777788877632222 2334577889999998763 234
Q ss_pred HHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccccccChhh
Q 002253 831 KRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDS 910 (947)
Q Consensus 831 ~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 910 (947)
..+..++.-+.=.| .-+-++|+.+|.+++. ..|......++.-|.+.....+||++|+-.|++- +-..+
T Consensus 480 ~~l~~~l~~~~~~~---~~iR~~Av~Alr~~a~----~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t----~P~~~ 548 (574)
T smart00638 480 KVLEPYLEGAEPLS---TFIRLAAILALRNLAK----RDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMET----KPSVA 548 (574)
T ss_pred HHHHHhcCCCCCCC---HHHHHHHHHHHHHHHH----hCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----CCCHH
Confidence 55566655333233 3455677777777642 2233222223445667777899999999999883 22356
Q ss_pred HHHHHHHHhccCCCc
Q 002253 911 ALSLFIKSVEEEPSL 925 (947)
Q Consensus 911 ~l~~~~~~~~~~~~~ 925 (947)
.|+-+...+..||+.
T Consensus 549 ~l~~ia~~l~~E~~~ 563 (574)
T smart00638 549 LLQRIAELLNKEPNL 563 (574)
T ss_pred HHHHHHHHHhhcCcH
Confidence 788888888888854
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=83.34 E-value=13 Score=44.56 Aligned_cols=237 Identities=18% Similarity=0.193 Sum_probs=130.6
Q ss_pred CchhHHHHHHhhcCChHHHHHHHHHHHcC----CCCchh-HHhHHHhhhccCcchhHHHHHHHHHHHhh-cccccccccH
Q 002253 655 QPVQMWINQLEKDGDVVAQAQAIAALEAL----PHLSFN-VVNTLNNFLSDSKAFWRVRIEAAYALANT-ASEETDWAGL 728 (947)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~----~~~s~~-~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~-~~~~~~~~g~ 728 (947)
++-..-+.++..|++-.-|-.|+.++.+. |..... ....|.+.|.|+. .+|+..|+.+|..+ .++.....=+
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~ 190 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLI 190 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhH
Confidence 34456677888899999999999777753 443223 4678888898865 89999999999998 3332211112
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh--HHHHHHHHHHhhhcCCCCCCCchHHHH
Q 002253 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP--REAVEFVLQLLKYNDNNGNPYSDVFWL 806 (947)
Q Consensus 729 ~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p--~~v~~fll~ll~~NdNs~N~ysD~~y~ 806 (947)
+.+.+...+.- +.| +-++|..+.+.+..+-..+...+ ..+.+.|+.+|+ .++.--+
T Consensus 191 ~~~~~~L~~~l-----~~~---------~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------s~~~~V~ 248 (526)
T PF01602_consen 191 PKLIRILCQLL-----SDP---------DPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ--------SSSPSVV 248 (526)
T ss_dssp HHHHHHHHHHH-----TCC---------SHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHhhhcc-----ccc---------chHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh--------ccccHHH
Confidence 22333332210 111 13578878777776543333333 456777888887 1112233
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCc
Q 002253 807 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNT 886 (947)
Q Consensus 807 a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (947)
-+.++++..+.. ....+..++.-+-+++. |...-+-..+|++|.++.......+....+.-+ +-....
T Consensus 249 ~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~---~l~~~~ 316 (526)
T PF01602_consen 249 YEAIRLIIKLSP---SPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPAVFNQSLILF---FLLYDD 316 (526)
T ss_dssp HHHHHHHHHHSS---SHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHH---HHHCSS
T ss_pred HHHHHHHHHhhc---chHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchhhhhhhhhhh---eecCCC
Confidence 333344433222 22256667777777775 333335556667777664221001111111111 112233
Q ss_pred hHHHHHHHHHHhhcccccccChhhHHHHHHHHh-cc-CCCcccc
Q 002253 887 IWQVRVEASRALLDLEFHCNGIDSALSLFIKSV-EE-EPSLRGE 928 (947)
Q Consensus 887 ~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~-~~-~~~~r~~ 928 (947)
...||..|++.|..+.- .+.....+.-++..+ +. |+.+|..
T Consensus 317 d~~Ir~~~l~lL~~l~~-~~n~~~Il~eL~~~l~~~~d~~~~~~ 359 (526)
T PF01602_consen 317 DPSIRKKALDLLYKLAN-ESNVKEILDELLKYLSELSDPDFRRE 359 (526)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred ChhHHHHHHHHHhhccc-ccchhhHHHHHHHHHHhccchhhhhh
Confidence 46799999999998863 333345666677777 55 6655544
No 29
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=80.03 E-value=2.2 Score=28.86 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcccccccccHHHHHHHHH
Q 002253 707 VRIEAAYALANTASEETDWAGLLHLVKFYK 736 (947)
Q Consensus 707 VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (947)
||.+||.+|+++..++. ++.|+++.+
T Consensus 1 VR~~Aa~aLg~igd~~a----i~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRA----IPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHH----HHHHHHHhc
Confidence 79999999999988653 777877654
No 30
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=77.80 E-value=2.2 Score=29.39 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 002253 705 WRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (947)
Q Consensus 705 ~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (947)
|.||.+||.+|+++.+++. ...|+++.
T Consensus 1 ~~vR~~aa~aLg~~~~~~a----~~~L~~~l 27 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEA----VPALIKAL 27 (30)
T ss_pred CHHHHHHHHHHHHcCCHhH----HHHHHHHh
Confidence 5799999999999877653 56666554
No 31
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=71.19 E-value=59 Score=34.99 Aligned_cols=70 Identities=26% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (947)
|+++--.|.......|+.-.|.+... ..++.+|...|.|++--=-||-|||+||+....++. +..|.|+.
T Consensus 40 ~i~ka~~d~s~llkhe~ay~LgQ~~~--~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~----~~~l~k~~ 109 (289)
T KOG0567|consen 40 AITKAFIDDSALLKHELAYVLGQMQD--EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPES----LEILTKYI 109 (289)
T ss_pred HHHHhcccchhhhccchhhhhhhhcc--chhhHHHHHHhcccccchHHHHHHHHHHHhhcchhh----HHHHHHHh
Confidence 44444444445555566666776532 246788999999999899999999999998875443 56666665
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=70.62 E-value=1.2e+02 Score=37.98 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=37.0
Q ss_pred cCChHHHHHHHHHHHcCCCCch--hHHhHHHhhhccCcchhHHHHHHHHHHHhhc
Q 002253 667 DGDVVAQAQAIAALEALPHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTA 719 (947)
Q Consensus 667 drdv~aq~eAi~~l~~~~~~s~--~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (947)
|++-.-|--|++.|.....+.. .+...+.++|.|.. --||..||.|++|+-
T Consensus 116 d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~--pYVRKtAalai~Kly 168 (746)
T PTZ00429 116 NSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPD--PYVRKTAAMGLGKLF 168 (746)
T ss_pred CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHH
Confidence 4677888888998887654322 24556788888865 459999999999864
No 33
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=68.33 E-value=20 Score=37.07 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhccccC----CCCCChhHHHHHHHHHHHHHH
Q 002253 346 SIKLSFALARQWFGVYIT----PELPNDEWLLDGLAGFLTDSF 384 (947)
Q Consensus 346 ~~~laHELAHQWFG~lVt----~~~w~d~WL~EGfA~Y~~~~~ 384 (947)
..++|||+.|-+--..+. ..+--|.-+.||+|.+++...
T Consensus 66 ~~~iaHE~hH~~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~ 108 (195)
T PF10026_consen 66 PALIAHEYHHNCRYEQIGWDPEDTTLLDSLIMEGLAEYFAEEL 108 (195)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 458999999996433332 122336789999999986544
No 34
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=66.21 E-value=7.9 Score=43.10 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 002253 345 TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (947)
Q Consensus 345 ~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~ 388 (947)
...+|-||||||=+.. -+|.=+||+||++.+..-+++.
T Consensus 165 LA~LIfHELaHq~~Yv------~~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 165 LARLIFHELAHQTLYV------KGDTAFNESFATFVEREGARRW 202 (337)
T ss_pred HHHHHHHHHhhceeec------CCCchhhHHHHHHHHHHHHHHH
Confidence 4568999999994322 2477899999999987655544
No 35
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=66.07 E-value=8.6 Score=26.76 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=19.8
Q ss_pred HHHhhhccCcchhHHHHHHHHHHHhhc
Q 002253 693 TLNNFLSDSKAFWRVRIEAAYALANTA 719 (947)
Q Consensus 693 ~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (947)
.|.+.+.|+ -+.||..|+.+|+.++
T Consensus 4 ~l~~~l~D~--~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDP--SPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-S--SHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 456677775 8999999999999875
No 36
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=63.94 E-value=19 Score=28.48 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=22.5
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhh
Q 002253 690 VVNTLNNFLSDSKAFWRVRIEAAYALANT 718 (947)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~ 718 (947)
+...|...|.|... .||..|+.||+++
T Consensus 29 ~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 29 LLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 56678888988766 9999999999863
No 37
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=63.62 E-value=12 Score=39.95 Aligned_cols=53 Identities=26% Similarity=0.221 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc
Q 002253 669 DVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET 723 (947)
Q Consensus 669 dv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~ 723 (947)
.-.-|.|+.--|++.. |..++-.|.+.|.|+.----||.|||+||+.+++++.
T Consensus 200 SalfrhEvAfVfGQl~--s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 200 SALFRHEVAFVFGQLQ--SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred hHHHHHHHHHHHhhcc--chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 4455667777777654 3345667888889988888999999999999999875
No 38
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=59.64 E-value=4 Score=51.30 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=78.7
Q ss_pred cccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhcC-----------CCcccHHHH
Q 002253 433 IFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGN-----------LERPFLKEF 501 (947)
Q Consensus 433 ~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v~~-----------~~~~dl~~f 501 (947)
.|....-.|+.++.+|+++++|.+.|.+.+++.+...... ....|....-...+ ..++++.-+
T Consensus 444 ~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~------~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~ 517 (1180)
T KOG1932|consen 444 SYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM------LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMG 517 (1180)
T ss_pred hHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh------HHHHHHHHHHhccCCeeEEEEEEEeeccccccHH
Confidence 4444456799999999999999999999999999876542 22333222222211 246789999
Q ss_pred HHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCC
Q 002253 502 FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVK 538 (947)
Q Consensus 502 ~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~ 538 (947)
++||+.++|+..+.|...||++++.++..++|..+..
T Consensus 518 i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~~g 554 (1180)
T KOG1932|consen 518 IDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYTAG 554 (1180)
T ss_pred HHHHhhhccccceeeecccchhhhhhhhhccccccCC
Confidence 9999999999999999999999999999999987654
No 39
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=58.81 E-value=9.4 Score=40.35 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 002253 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (947)
Q Consensus 346 ~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~ 388 (947)
..+|-||||||=|... +|.=+||+||++.+..-+++.
T Consensus 198 A~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 198 ASLIFHELAHQKIYVN------NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHhhheEeec------CcchHhHHHHHHHHHHhHHHH
Confidence 4589999999976433 577899999999987655443
No 40
>PF08252 Leader_CPA1: arg-2/CPA1 leader peptide ; InterPro: IPR013203 In this family there are leaders peptides involved in the regulation of the glutaminase subunit (small subunit) of arginine-specific carbamoyl phosphate synthetase. In Neurospora crassa it is a small upstream ORF of 24 codons above the arg-2 locus []. In yeast it is the leader peptide of the CPA1 gene. The 5' region of CPA1 mRNA contains a 25 codon upstream open reading frame. The leader peptide, the product of the upstream open reading frame, plays an essential, negative role in the specific repression of CPA1 by arginine [].; PDB: 2XL1_A.
Probab=58.47 E-value=6.3 Score=25.30 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=10.6
Q ss_pred ccchhhhhHHHHHhh
Q 002253 931 YSCYEDMSDKRWIRF 945 (947)
Q Consensus 931 ~~~~~~~~~~~~~~~ 945 (947)
..|-+.++|++||--
T Consensus 8 ~t~qDYiSDhiWk~~ 22 (24)
T PF08252_consen 8 FTSQDYISDHIWKAS 22 (24)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhh
Confidence 468999999999853
No 41
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=55.97 E-value=92 Score=34.81 Aligned_cols=126 Identities=24% Similarity=0.202 Sum_probs=81.7
Q ss_pred hhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCC
Q 002253 665 EKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENI 744 (947)
Q Consensus 665 ~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~ 744 (947)
..|.+...|..|+.+|.+... ...+..|...+.+ ..=++||..|+.+|+++..+.. +.-|+...+...-.. .
T Consensus 83 l~d~~~~vr~~a~~aLg~~~~--~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~-a 154 (335)
T COG1413 83 LSDEDPRVRDAAADALGELGD--PEAVPPLVELLEN-DENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGS-A 154 (335)
T ss_pred hcCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhh-h
Confidence 356667888999999998753 3567888888884 3579999999999999987654 555555544322000 0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccc
Q 002253 745 GLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE 817 (947)
Q Consensus 745 ~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~ 817 (947)
..+. +....-++.+...+++.+-+. +...+|.+.|+.++. .-+.+.+.+|+.+.
T Consensus 155 ~~~~-----~~~~~~~r~~a~~~l~~~~~~------~~~~~l~~~l~~~~~--------~vr~~Aa~aL~~~~ 208 (335)
T COG1413 155 AAAL-----DAALLDVRAAAAEALGELGDP------EAIPLLIELLEDEDA--------DVRRAAASALGQLG 208 (335)
T ss_pred hhhc-----cchHHHHHHHHHHHHHHcCCh------hhhHHHHHHHhCchH--------HHHHHHHHHHHHhh
Confidence 0000 222336778888888877643 446666666664433 46667777777653
No 42
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=54.82 E-value=2.9e+02 Score=32.70 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 002253 778 SPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (947)
Q Consensus 778 ~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (947)
...+..+||.|++|||-+.- |.--+..++..+..+
T Consensus 150 ~l~~ll~~l~nviKfn~~~l----~e~~i~~lv~~i~~i 184 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFNYL----DEDEISSLVDQICTI 184 (464)
T ss_pred hHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHHH
Confidence 45678899999999886543 334577777766655
No 43
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=54.43 E-value=1.7e+02 Score=37.09 Aligned_cols=159 Identities=19% Similarity=0.274 Sum_probs=96.2
Q ss_pred ccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC
Q 002253 699 SDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS 778 (947)
Q Consensus 699 ~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~ 778 (947)
.|+..-|+||-+||++|..+-+.. ...|..+|+ +.=|.-+++.++..-..
T Consensus 340 DDeD~SWkVRRaAaKcl~a~IsSR-----~E~L~~~~q-------------------------~l~p~lI~RfkEREEnV 389 (1233)
T KOG1824|consen 340 DDEDMSWKVRRAAAKCLEAVISSR-----LEMLPDFYQ-------------------------TLGPALISRFKEREENV 389 (1233)
T ss_pred cccchhHHHHHHHHHHHHHHHhcc-----HHHHHHHHH-------------------------HhCHHHHHHHHHHhhhH
Confidence 356679999999999999876542 445555544 44567778887776667
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHH----HHHHHHHHHHHhccccccCCCchhHHHH
Q 002253 779 PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFL----SSLLKRIDRLLQFDRLMPSYNGILTISC 854 (947)
Q Consensus 779 p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~----~~~~~ei~r~~~~d~~~psy~~~vt~~~ 854 (947)
-.+|..-++++|+.--+-.--|.|+= |.-.-.++ .+...+ -.+++.|.|.++ ++=+|+ -++|
T Consensus 390 k~dvf~~yi~ll~qt~~~~~~~~d~d-------~~e~~g~~-s~~~~L~~~~~~iVkai~~qlr-~ks~kt-----~~~c 455 (1233)
T KOG1824|consen 390 KADVFHAYIALLKQTRPVIEVLADND-------AMEQGGTP-SDLSMLSDQVPLIVKAIQKQLR-EKSVKT-----RQGC 455 (1233)
T ss_pred HHHHHHHHHHHHHcCCCCcccccCch-------hhhccCCc-cchHHHHhhhHHHHHHHHHHHh-hccccc-----hhhH
Confidence 78888888888884443333332211 11100110 011122 237888899888 666662 3578
Q ss_pred HHHHHHHHHHhcCCC--chhh-hhhhhcccCCCCchHHHHHHHHHHhhcc
Q 002253 855 IRTLTQIALKLSGFI--SLDQ-VVKLIKPFRDFNTIWQVRVEASRALLDL 901 (947)
Q Consensus 855 l~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~vr~~a~~~l~~~ 901 (947)
+..|..|...+-|.+ ..+. +-+..+.+.+.......++.|+-+|.-.
T Consensus 456 f~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~ 505 (1233)
T KOG1824|consen 456 FLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSA 505 (1233)
T ss_pred HHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHH
Confidence 888877753222211 1111 2244467777777788999988887665
No 44
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=54.40 E-value=20 Score=35.18 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=32.6
Q ss_pred HHHHHHH-HHhCCCCCCCCccEEEeCCCCcccccccccchhhc-ccccccCccccchh--hHHHHHHHHHHHHhhhc
Q 002253 287 NAFSHYE-TYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVIDQA--IDTSIKLSFALARQWFG 359 (947)
Q Consensus 287 ~~l~~~e-~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~d~~--~~~~~~laHELAHQWFG 359 (947)
+.++-++ .+|+.++|-+ .+.+-. - +... +|.... ...+-+++...+.. .....+|.|||||.|..
T Consensus 5 ~~~~~~n~~~F~~~l~~~--~i~w~~-r----~~~~-~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHP--KVVWNK-R----LRKT-GGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCC--EEEEeh-h----hhhh-hHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444454 7888777765 333322 1 1111 122222 22344444443311 22345899999999975
No 45
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=52.13 E-value=2.3e+02 Score=35.79 Aligned_cols=113 Identities=12% Similarity=0.237 Sum_probs=55.9
Q ss_pred eEEEEEcCCchhHHH--------HHHHHHHHHHHHHHHHhCCCC-CCCC-----ccEEEeCCCCcccccccccchhhccc
Q 002253 265 LMSHICLPANVSKIH--------NTVEFFHNAFSHYETYLDAKF-PFGS-----YKQVFLAPEMAVSSSTFGAAMGIFSS 330 (947)
Q Consensus 265 ~v~~~~~p~~~~~~~--------~~~~~~~~~l~~~e~~~g~~Y-P~~k-----~~~V~vp~~~~~~~~~~gagl~~~~~ 330 (947)
.|.+..||...+.+. ...++=..++++|.++.|..+ |-.. -+.-|+- ++ ..|+|-..|+.
T Consensus 144 ~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~K-----AD-~~G~G~AYY~~ 217 (775)
T PF03272_consen 144 YIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAK-----AD-KSGPGAAYYGS 217 (775)
T ss_pred EEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEE-----ec-CCCCCCccccc
Confidence 466777777665554 344666788888888888433 2111 1222332 11 12333333333
Q ss_pred ccccCcc-ccchhh---HHHHHHHHHHHHhhhccccCCC-CCChhHHHHHHHHHHHHHH
Q 002253 331 QILYDEK-VIDQAI---DTSIKLSFALARQWFGVYITPE-LPNDEWLLDGLAGFLTDSF 384 (947)
Q Consensus 331 ~lL~~~~-~~d~~~---~~~~~laHELAHQWFG~lVt~~-~w~d~WL~EGfA~Y~~~~~ 384 (947)
...-... ....-+ .+--.+-|||+|.+=|.++... .+.+.| |-=+|.++++.+
T Consensus 218 ~w~a~ss~s~~~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~ 275 (775)
T PF03272_consen 218 NWTAQSSSSLSFYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTY 275 (775)
T ss_pred cceecCchhHHHHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhh
Confidence 2211111 111001 0112578999999988887333 344555 334455554443
No 46
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=49.99 E-value=32 Score=35.61 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 002253 346 SIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKF 388 (947)
Q Consensus 346 ~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~ 388 (947)
-.++|||+.|-|.-. ..-.--+.++-||+...++++|++..
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~wL~~~ 134 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLWLESE 134 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 357999999999732 22223367999999999999998753
No 47
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=49.36 E-value=19 Score=31.42 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhcccccccCccccch-hhHHHHHHHHHHHHhh
Q 002253 288 AFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQ-AIDTSIKLSFALARQW 357 (947)
Q Consensus 288 ~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~d~-~~~~~~~laHELAHQW 357 (947)
+-..+|..||.+ |+..++-.=|.. .......+|--.+....+.+.+....+ ......+++|||+|=+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a-~~~~~~~~A~A~T~G~~I~f~~g~~~~~s~~~~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAA-SRAAAALGARAFTVGNDIYFAPGKYNPDSPEGRALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCch-hhhhhccCCeEEEECCEEEEcCCCcCCCCCCcchhHhHHHHHHH
Confidence 345678899854 666655432210 011122333233445556554433211 1223568999999964
No 48
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.97 E-value=4e+02 Score=34.54 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=49.8
Q ss_pred CchhHHHHHHhhcCChHHHHHHHHHHHcCCCCch--------hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc
Q 002253 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSF--------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE 722 (947)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~--------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~ 722 (947)
-|-+.|+.++-+..+..-|..|+.+|+-...++. .+..+...-|.|+ -=|||-+|+.|++++++.-
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp--hprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP--HPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhhhhhh
Confidence 4688899999999999999999888875432222 2344555667774 6799999999999999753
No 49
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=44.82 E-value=7 Score=44.81 Aligned_cols=70 Identities=30% Similarity=0.342 Sum_probs=47.0
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccH----HHHHHHHHhcCCCCCCCCCCCCCCCChHHHH----HH
Q 002253 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL----LHLVKFYKSRRFDENIGLPRPNDFRDFSEYF----VL 761 (947)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~----~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~----~~ 761 (947)
+-++|.-.+.+.. =++||+.||-+|+..+..+....-+ ..|+.+ +.+.|+|-+|.+|- ++
T Consensus 574 ~F~~L~~Lv~~~~-NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~a-----------Li~s~~~v~f~eY~~~Dsl~ 641 (728)
T KOG4535|consen 574 AFNALTSLVTSCK-NFKVRIRAAAALSVPGKREQYGDQYALSWNALVTA-----------LQKSEDTIDFLEYKYCDSLR 641 (728)
T ss_pred HHHHHHHHHHHhc-cceEeehhhhhhcCCCCcccchhHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3456666666643 5799999999999988876433222 233333 34689999999996 46
Q ss_pred HHHHHHHhhc
Q 002253 762 EAIPHAVAMV 771 (947)
Q Consensus 762 ~~i~~a~a~~ 771 (947)
+.||.|+..+
T Consensus 642 ~q~c~av~hl 651 (728)
T KOG4535|consen 642 TQICQALIHL 651 (728)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 50
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=44.41 E-value=45 Score=34.44 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccccccc----chhhcccccccCccccchhhHHHHHHHHHHHH
Q 002253 280 NTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA----AMGIFSSQILYDEKVIDQAIDTSIKLSFALAR 355 (947)
Q Consensus 280 ~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga----gl~~~~~~lL~~~~~~d~~~~~~~~laHELAH 355 (947)
.+...+...+..|++.+|.+ .++ |.+- .| ..-||. |.++++..|+.-|.. -...+++|||||
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~--~~~---i~ir-~~---ksrWGsc~~~~~I~ln~~L~~~P~~-----~idYVvvHEL~H 174 (205)
T PF01863_consen 109 QAKEYLPERLKKYAKKLGLP--PPK---IKIR-DM---KSRWGSCSSKGNITLNWRLVMAPPE-----VIDYVVVHELCH 174 (205)
T ss_pred HHHHHHHHHHHHHHHHcCCC--cce---EEEe-eh---hhccccCCCCCcEEeecccccCCcc-----HHHHHHHHHHHH
Confidence 45677888889999998864 343 3332 22 124543 455566555443321 124589999999
Q ss_pred hhhcc
Q 002253 356 QWFGV 360 (947)
Q Consensus 356 QWFG~ 360 (947)
-..-|
T Consensus 175 l~~~n 179 (205)
T PF01863_consen 175 LRHPN 179 (205)
T ss_pred hccCC
Confidence 87654
No 51
>PTZ00429 beta-adaptin; Provisional
Probab=42.80 E-value=3.3e+02 Score=34.37 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=60.7
Q ss_pred hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 002253 688 FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHA 767 (947)
Q Consensus 688 ~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a 767 (947)
..+++.|.+=+.|+.. -||+-|.+.|+++..++. ...++...++..-++ .. +|+|+=.-|
T Consensus 104 lLaINtl~KDl~d~Np--~IRaLALRtLs~Ir~~~i----~e~l~~~lkk~L~D~-------------~p-YVRKtAala 163 (746)
T PTZ00429 104 LLAVNTFLQDTTNSSP--VVRALAVRTMMCIRVSSV----LEYTLEPLRRAVADP-------------DP-YVRKTAAMG 163 (746)
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHHHcCCcHHH----HHHHHHHHHHHhcCC-------------CH-HHHHHHHHH
Confidence 3467778888887654 689999999999887654 456666666522111 12 466766666
Q ss_pred HhhccccCCC-Ch-HHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 002253 768 VAMVRAADNK-SP-REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (947)
Q Consensus 768 ~a~~r~~~~~-~p-~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (947)
+.++-..+.. ++ .....-|.++|. | +|.-.+++.+.+|..+
T Consensus 164 i~Kly~~~pelv~~~~~~~~L~~LL~--D------~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 164 LGKLFHDDMQLFYQQDFKKDLVELLN--D------NNPVVASNAAAIVCEV 206 (746)
T ss_pred HHHHHhhCcccccccchHHHHHHHhc--C------CCccHHHHHHHHHHHH
Confidence 6665433221 11 223455666653 2 3444777777777655
No 52
>PRK04860 hypothetical protein; Provisional
Probab=42.08 E-value=58 Score=32.55 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhc-ccccccCccccc--hhhHHHHHHHHHHHHhh
Q 002253 282 VEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIF-SSQILYDEKVID--QAIDTSIKLSFALARQW 357 (947)
Q Consensus 282 ~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~-~~~lL~~~~~~d--~~~~~~~~laHELAHQW 357 (947)
...+...+..-+++||.+||-+.. .|-.- +. . ||.... +..+=++|.... .......+|+|||||-|
T Consensus 6 ~~~~~~~~~~a~~~f~~~f~~p~~--~f~~R---~r--t--aG~~~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 6 MRRLRECLAQANLYFKRTFPEPKV--SYTQR---GT--S--AGTAWLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEE--EEeec---ch--h--hcchhHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHH
Confidence 344555566667788877766543 33111 11 1 233222 222333333211 11223458999999987
No 53
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.03 E-value=2.4e+02 Score=32.86 Aligned_cols=118 Identities=24% Similarity=0.151 Sum_probs=81.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhc
Q 002253 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSR 738 (947)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~ 738 (947)
-+...| +|.|-..+-+|++.|...+.. .....|...+.|+ =-.||..|+.+|+....++. ...|+.++.+
T Consensus 151 ~L~~~L-~d~d~~Vra~A~raLG~l~~~--~a~~~L~~al~d~--~~~VR~aA~~al~~lG~~~A----~~~l~~~~~~- 220 (410)
T TIGR02270 151 ALEAAL-THEDALVRAAALRALGELPRR--LSESTLRLYLRDS--DPEVRFAALEAGLLAGSRLA----WGVCRRFQVL- 220 (410)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHhhccc--cchHHHHHHHcCC--CHHHHHHHHHHHHHcCCHhH----HHHHHHHHhc-
Confidence 344444 589999999999999987543 3566788888775 57899999999998877543 5566665543
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc
Q 002253 739 RFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (947)
Q Consensus 739 ~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (947)
+ +.| ....+..+++... .+++.+.|..+++- .+.+.+.+.|||.+..
T Consensus 221 ---~--g~~------------~~~~l~~~lal~~------~~~a~~~L~~ll~d----------~~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 221 ---E--GGP------------HRQRLLVLLAVAG------GPDAQAWLRELLQA----------AATRREALRAVGLVGD 267 (410)
T ss_pred ---c--Ccc------------HHHHHHHHHHhCC------chhHHHHHHHHhcC----------hhhHHHHHHHHHHcCC
Confidence 1 122 2344444444442 23899999999983 3478899999997654
Q ss_pred c
Q 002253 819 G 819 (947)
Q Consensus 819 ~ 819 (947)
+
T Consensus 268 p 268 (410)
T TIGR02270 268 V 268 (410)
T ss_pred c
Confidence 3
No 54
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.66 E-value=68 Score=35.96 Aligned_cols=121 Identities=25% Similarity=0.285 Sum_probs=71.1
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccc------cccccHHHHHHHHHh---------cCCCCCCCCCCCCC---
Q 002253 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEE------TDWAGLLHLVKFYKS---------RRFDENIGLPRPND--- 751 (947)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~------~~~~g~~~L~~~f~~---------~~~~~~~~~p~~Nd--- 751 (947)
.+.+|...+.| ---+|.|+|+.||...++.. +.-.|+++|++..|+ .+|..+..|---|.
T Consensus 252 lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 252 LVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred hHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 56677666655 36799999999999988643 233579999988876 35654433211111
Q ss_pred ----CC-------ChHH-HHHHHHHHHHHhhccccCCC-----------------------ChHHHHH---HHHHHhhhc
Q 002253 752 ----FR-------DFSE-YFVLEAIPHAVAMVRAADNK-----------------------SPREAVE---FVLQLLKYN 793 (947)
Q Consensus 752 ----F~-------d~~~-y~~~~~i~~a~a~~r~~~~~-----------------------~p~~v~~---fll~ll~~N 793 (947)
|- +..+ =-+|+ +|.+.+||..+. .|-+++. --+-+|.||
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqc---hAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQC---HAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhh---hHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 11 0000 01222 334444443221 1333332 235688999
Q ss_pred CCCCCCCchHHHHHHHHHHhhc
Q 002253 794 DNNGNPYSDVFWLAALVQSVGE 815 (947)
Q Consensus 794 dNs~N~ysD~~y~a~li~al~~ 815 (947)
||++..++|+--+-.||.=+++
T Consensus 407 d~~k~~lld~gi~~iLIp~t~s 428 (550)
T KOG4224|consen 407 DNDKEALLDSGIIPILIPWTGS 428 (550)
T ss_pred cccHHHHhhcCCcceeecccCc
Confidence 9999999998877777765543
No 55
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=35.67 E-value=4.7e+02 Score=28.26 Aligned_cols=127 Identities=22% Similarity=0.329 Sum_probs=73.6
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHcCCCCchh--------HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccH
Q 002253 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFN--------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGL 728 (947)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~--------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~ 728 (947)
-.+.+.-|+..+|-.-|-.|.-++......+.. ....+...|.+ ..-.||..|..+|...+....+.
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~--p~~~vr~~AL~aL~Nls~~~en~--- 88 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND--PNPSVREKALNALNNLSVNDENQ--- 88 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC--CChHHHHHHHHHHHhcCCChhhH---
Confidence 346667778888988888888888765321111 22345556655 47799999999999887643211
Q ss_pred HHHHHHHHhcCCC-----C-CC-----------CCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhh
Q 002253 729 LHLVKFYKSRRFD-----E-NI-----------GLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLK 791 (947)
Q Consensus 729 ~~L~~~f~~~~~~-----~-~~-----------~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~ 791 (947)
..++.|-..-|. + ++ ++...|+. ++.+-+.||.-+..+...++++-..|...|++|=.
T Consensus 89 -~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 -EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 112333322221 1 11 23333333 44556667776666665555555566666666655
Q ss_pred hc
Q 002253 792 YN 793 (947)
Q Consensus 792 ~N 793 (947)
..
T Consensus 164 np 165 (254)
T PF04826_consen 164 NP 165 (254)
T ss_pred CH
Confidence 33
No 56
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.02 E-value=1.3e+02 Score=32.43 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Q 002253 758 YFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLL 837 (947)
Q Consensus 758 y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~ 837 (947)
=|++.+...|+..+-..+-....+|.+++.+++.++=+.+.+ |-...||.++.++. ...++.+|.+.-
T Consensus 127 ~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~----~~~~~Lv~~~~dL~--------~~EL~~~I~~~f 194 (249)
T PF06685_consen 127 EYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPS----FLWGSLVADICDLY--------PEELLPEIRKAF 194 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHhcC--------HHHhHHHHHHHH
Confidence 358889999999887777778999999999999876655544 45667777666553 345778888877
Q ss_pred hccccccCC
Q 002253 838 QFDRLMPSY 846 (947)
Q Consensus 838 ~~d~~~psy 846 (947)
..+.+-|++
T Consensus 195 ~~~lVd~~~ 203 (249)
T PF06685_consen 195 EDGLVDPSF 203 (249)
T ss_pred HcCCCCccc
Confidence 766665554
No 57
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=33.09 E-value=7.9e+02 Score=28.13 Aligned_cols=42 Identities=10% Similarity=0.035 Sum_probs=30.3
Q ss_pred ecCCCceeeEeeccCchhHHHHHHhhcCChHHHHHHHHHHHc
Q 002253 641 ADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (947)
Q Consensus 641 iDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (947)
+--+|.=--+++.++++..+..++++|.|-..|-||.+.|..
T Consensus 71 llRgFSAPV~l~~~~s~~eL~~L~~~D~D~FnRWdA~Q~L~~ 112 (367)
T PF11940_consen 71 LLRGFSAPVKLEYDYSDEELAFLAAHDSDPFNRWDAAQTLAT 112 (367)
T ss_dssp ESTTG-SSSEEE----HHHHHHHHHH-SSHHHHHHHHHHHHH
T ss_pred hhcCcccceEecCCCCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 445566666778889999999999999999999999988874
No 58
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=30.63 E-value=47 Score=30.40 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhcccc
Q 002253 345 TSIKLSFALARQWFGVYI 362 (947)
Q Consensus 345 ~~~~laHELAHQWFG~lV 362 (947)
.+-+++|||+|.+++..-
T Consensus 42 ~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 42 QRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 345899999999988765
No 59
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=30.23 E-value=76 Score=31.19 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhcc
Q 002253 344 DTSIKLSFALARQWFGV 360 (947)
Q Consensus 344 ~~~~~laHELAHQWFG~ 360 (947)
....+|.|||+|.|...
T Consensus 59 ~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 59 ELIDTLLHEMAHAAAYV 75 (157)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34568999999999743
No 60
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=29.25 E-value=2.9 Score=30.24 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=14.0
Q ss_pred CCChHHHHHHHHHHHHHhhccccCCCC
Q 002253 752 FRDFSEYFVLEAIPHAVAMVRAADNKS 778 (947)
Q Consensus 752 F~d~~~y~~~~~i~~a~a~~r~~~~~~ 778 (947)
||+|... |||-....|+.+||.+|+|
T Consensus 2 ys~F~~W-LqCY~v~gM~sl~D~~gRT 27 (39)
T PF09292_consen 2 YSAFEAW-LQCYSVPGMKSLRDRNGRT 27 (39)
T ss_dssp HHHHHHH--SSTT-TT-EEEE-TTS-E
T ss_pred cHHHHHH-HHHhcccccccccccCCCE
Confidence 3444443 6666667788999999875
No 61
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=28.38 E-value=3.6e+02 Score=26.87 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=25.8
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccc
Q 002253 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEE 722 (947)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~ 722 (947)
.-.+|.++|..++- +.||.||.+.|+-+.-=+
T Consensus 11 LL~~L~~iLk~e~s-~~iR~E~lr~lGilGALD 42 (160)
T PF11865_consen 11 LLDILLNILKTEQS-QSIRREALRVLGILGALD 42 (160)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHhhhccccC
Confidence 45678889998855 999999999999776433
No 62
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=28.37 E-value=2.2e+02 Score=28.12 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 002253 275 VSKIHNTVEFFHNAFSHYETYLDAKFPFG 303 (947)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~e~~~g~~YP~~ 303 (947)
...+..+...+..+.+||.++|| .=++.
T Consensus 66 ~~~~vdA~~~~~~v~d~y~~~~g-r~siD 93 (150)
T PF01447_consen 66 DSAAVDAHYNAGKVYDYYKNVFG-RNSID 93 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHS-S-STT
T ss_pred ccHHHHHHHhHHHHHHHHHHHHC-CCCcC
Confidence 34556677788999999999999 55665
No 63
>PHA02564 V virion protein; Provisional
Probab=26.92 E-value=3e+02 Score=26.88 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=14.9
Q ss_pred cCCCCCCCchHHHHHHHHHHh
Q 002253 793 NDNNGNPYSDVFWLAALVQSV 813 (947)
Q Consensus 793 NdNs~N~ysD~~y~a~li~al 813 (947)
=+|..|+|||....+++-.||
T Consensus 120 ~EnG~~pys~~~i~~~~~~~~ 140 (141)
T PHA02564 120 HENGQQPYSAEQIAQGVREVL 140 (141)
T ss_pred HhcCCCCCCHHHHHHHHHHhh
Confidence 346678999888877765544
No 64
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.43 E-value=36 Score=40.91 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc--ccHHHHHHHH
Q 002253 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--AGLLHLVKFY 735 (947)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~--~g~~~L~~~f 735 (947)
+|.++.--|+|| ||-||.+|..+|.+.+...+.+ ..+..|+.+|
T Consensus 374 ACGA~VhGlEDE--f~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMf 419 (823)
T KOG2259|consen 374 ACGALVHGLEDE--FYEVRRAAVASLCSLATSSPGFAVRALDFLVDMF 419 (823)
T ss_pred ccceeeeechHH--HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
No 65
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=26.33 E-value=83 Score=32.77 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhccccCC
Q 002253 346 SIKLSFALARQWFGVYITP 364 (947)
Q Consensus 346 ~~~laHELAHQWFG~lVt~ 364 (947)
.-+||||++|-.-++....
T Consensus 90 ~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 90 AAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp HHHHHHHHHHHHTTHCCCC
T ss_pred HHHHHHHHHHHHcCCcchH
Confidence 4589999999998877654
No 66
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=23.23 E-value=51 Score=30.22 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhh
Q 002253 346 SIKLSFALARQW 357 (947)
Q Consensus 346 ~~~laHELAHQW 357 (947)
+.+++|||+|-|
T Consensus 80 ~~TL~HEL~H~W 91 (141)
T PHA02456 80 RDTLAHELNHAW 91 (141)
T ss_pred HHHHHHHHHHHH
Confidence 457999999999
No 67
>PHA01816 hypothetical protein
Probab=23.08 E-value=1.1e+02 Score=28.28 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCC
Q 002253 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPY 800 (947)
Q Consensus 730 ~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~y 800 (947)
+-+.+++.+--. +..|+.-+-| -..|+|.||... ..-...+|++-.-||||+|.=
T Consensus 45 ayid~wkhf~hl--p~~pke~nvs----------~~navslvrg~r----hkkln~ileiynrnd~snnkn 99 (160)
T PHA01816 45 AYIDTWKHFAHL--PYFPKERNVS----------YVNAVSLVRGSR----HKKLNYILEIYNRNDDSNNKN 99 (160)
T ss_pred HHHHHHHHhhcC--CCCCcccccc----------hhhhhhhhhccc----hhhhHHHHHHHhcCCCcccch
Confidence 345555542222 2466655444 345778888542 234567899999999999974
No 68
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=1.1e+03 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=24.9
Q ss_pred HHHHh-hhcCCCCCCCchHHHHHHHHHHhhcccc
Q 002253 786 VLQLL-KYNDNNGNPYSDVFWLAALVQSVGELEF 818 (947)
Q Consensus 786 ll~ll-~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (947)
|.++. ++-|-+.|.|.-=.|+|.+...|+....
T Consensus 131 lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~ 164 (353)
T KOG2973|consen 131 LMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEA 164 (353)
T ss_pred hHHHHHHHhCcccccccchhHHHHHHHHHhhhhh
Confidence 34444 4567888999888999999999986543
No 69
>PRK04351 hypothetical protein; Provisional
Probab=22.22 E-value=96 Score=30.63 Aligned_cols=12 Identities=8% Similarity=-0.095 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHh
Q 002253 345 TSIKLSFALARQ 356 (947)
Q Consensus 345 ~~~~laHELAHQ 356 (947)
...+|+|||+|-
T Consensus 61 l~~vv~HElcH~ 72 (149)
T PRK04351 61 LIGIIKHELCHY 72 (149)
T ss_pred HHhhHHHHHHHH
Confidence 345899999995
No 70
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=22.10 E-value=4.3e+02 Score=26.54 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCCCchhHHhHHHhhhccCcc-hhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCC
Q 002253 674 AQAIAALEALPHLSFNVVNTLNNFLSDSKA-FWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDF 752 (947)
Q Consensus 674 ~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~-f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF 752 (947)
.||...|.+.+..+ ...+| .|.+.++ --.||.-|...|.++..++. +.+|.+.-+...|++...-|.+-.-
T Consensus 64 ~e~~~lL~~W~~i~--~~~aL--eLL~~~f~~~~VR~yAV~~L~~~sd~eL----~~yL~QLVQaLKyE~~~~~~~~~~~ 135 (166)
T cd00870 64 KQALELMPKWAKID--IEDAL--ELLSPYFTNPVVRKYAVSRLKLASDEEL----LLYLLQLVQALKYENLDLSPLPRLD 135 (166)
T ss_pred HHHHHHHhcCCCCC--HHHHH--HHcCccCCCHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHHHhcccccccccccc
Confidence 35666677665443 23444 2333321 35799999999999776654 3444444444445543212223345
Q ss_pred CChHHHHHHHHH
Q 002253 753 RDFSEYFVLEAI 764 (947)
Q Consensus 753 ~d~~~y~~~~~i 764 (947)
|..++|.|.+|+
T Consensus 136 s~La~fLl~Ral 147 (166)
T cd00870 136 SPLADFLIERAL 147 (166)
T ss_pred cHHHHHHHHHHh
Confidence 778889888865
No 71
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=20.18 E-value=93 Score=36.31 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=31.2
Q ss_pred CCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 002253 776 NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (947)
Q Consensus 776 ~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (947)
+..|.|+++.|.+.++.+-+.-|-|+ |+|..-.-+|+.
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~---~LAqay~~~g~~ 424 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWD---LLAQAYAELGNR 424 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHH---HHHHHHHHhCch
Confidence 55788999999999998777777776 888888777764
No 72
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=20.06 E-value=57 Score=32.98 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhh
Q 002253 346 SIKLSFALARQW 357 (947)
Q Consensus 346 ~~~laHELAHQW 357 (947)
..++||||+|||
T Consensus 112 ~~~~aHElGH~l 123 (173)
T PF13574_consen 112 IDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehhhhHhhc
Confidence 457999999997
No 73
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=20.03 E-value=53 Score=36.79 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 002253 347 IKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY 399 (947)
Q Consensus 347 ~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~ 399 (947)
.++|||+|||= |- ..|+=|+|++++...+. .+..++|-.+
T Consensus 198 ~T~~HElAHq~-G~-----------a~E~EANFiayLac~~s-~d~~frYSgy 237 (318)
T PF12725_consen 198 FTICHELAHQL-GF-----------ASEDEANFIAYLACINS-PDPYFRYSGY 237 (318)
T ss_pred HHHHHHHHHHh-CC-----------CCHHHHHHHHHHHHhcC-CChheeHHHH
Confidence 37999999994 22 26888999988876542 2333444443
Done!