Query 002253
Match_columns 947
No_of_seqs 419 out of 1953
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 18:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ebh_A PFA-M1, M1 family amino 100.0 1.8E-74 6.3E-79 707.6 57.9 537 14-682 9-578 (889)
2 3b34_A Aminopeptidase N; prote 100.0 4.3E-74 1.5E-78 709.1 55.2 562 12-701 32-627 (891)
3 3se6_A Endoplasmic reticulum a 100.0 2.7E-72 9.1E-77 701.4 55.5 603 12-719 66-707 (967)
4 2xdt_A Endoplasmic reticulum a 100.0 2E-71 6.8E-76 694.1 54.7 589 11-715 5-635 (897)
5 2gtq_A Aminopeptidase N; alani 100.0 9.9E-71 3.4E-75 681.4 56.0 567 16-713 13-613 (867)
6 4fke_A Aminopeptidase N; zinc 100.0 6.5E-71 2.2E-75 691.1 55.0 546 12-671 8-589 (909)
7 1z5h_A Tricorn protease intera 100.0 7.7E-70 2.6E-74 670.6 49.1 546 19-720 1-557 (780)
8 3u9w_A Leukotriene A-4 hydrola 100.0 1.8E-69 6E-74 651.3 28.4 443 17-533 12-473 (608)
9 3cia_A Cold-active aminopeptid 100.0 1E-63 3.5E-68 600.8 36.0 428 15-518 22-463 (605)
10 2xq0_A LTA-4 hydrolase, leukot 100.0 9.1E-64 3.1E-68 603.0 33.1 428 17-518 26-466 (632)
11 4fgm_A Aminopeptidase N family 99.9 1.4E-22 4.6E-27 241.1 19.0 315 186-514 108-452 (597)
12 3rjo_A Endoplasmic reticulum a 97.0 0.04 1.4E-06 62.7 21.0 32 636-667 67-99 (419)
13 3ltm_A Alpha-REP4; protein eng 96.8 0.014 4.9E-07 59.1 14.3 183 657-903 21-203 (211)
14 1oyz_A Hypothetical protein YI 96.2 0.17 5.7E-06 53.5 18.6 214 658-928 26-240 (280)
15 3ltj_A Alpharep-4; protein eng 96.2 0.051 1.7E-06 54.4 13.5 183 657-902 15-197 (201)
16 1oyz_A Hypothetical protein YI 95.6 0.23 8E-06 52.4 16.2 118 664-817 99-220 (280)
17 1te4_A Conserved protein MTH18 95.1 0.025 8.5E-07 52.9 5.8 121 654-815 10-130 (131)
18 3ltj_A Alpharep-4; protein eng 94.8 0.24 8.2E-06 49.4 12.8 147 661-861 50-196 (201)
19 3ltm_A Alpha-REP4; protein eng 93.6 0.46 1.6E-05 47.6 11.9 51 666-720 60-110 (211)
20 2vgl_B AP-2 complex subunit be 92.9 1.3 4.4E-05 52.4 16.1 231 661-928 126-372 (591)
21 1te4_A Conserved protein MTH18 89.8 0.51 1.7E-05 43.7 6.5 85 661-771 47-131 (131)
22 4hxt_A De novo protein OR329; 88.9 3 0.0001 42.3 12.3 200 664-904 10-242 (252)
23 1w63_A Adapter-related protein 87.2 8.5 0.00029 45.6 16.4 246 658-928 144-404 (618)
24 1b3u_A Protein (protein phosph 86.9 2.2 7.6E-05 49.6 10.9 212 660-902 246-469 (588)
25 2vgl_B AP-2 complex subunit be 86.8 18 0.00061 42.5 18.8 200 666-903 96-311 (591)
26 1w63_A Adapter-related protein 86.8 6 0.00021 46.9 14.7 108 666-793 323-434 (618)
27 4db8_A Armadillo-repeat protei 85.6 5.1 0.00018 40.8 11.8 174 655-862 11-208 (252)
28 1b3u_A Protein (protein phosph 84.7 1.7 5.7E-05 50.7 8.3 209 662-902 209-430 (588)
29 1lsh_A Lipovitellin (LV-1N, LV 84.5 2.5 8.4E-05 53.7 10.2 109 802-926 453-562 (1056)
30 2vgl_A Adaptor protein complex 77.4 16 0.00053 43.4 13.3 109 665-793 338-453 (621)
31 4db6_A Armadillo repeat protei 77.2 17 0.00057 35.7 11.6 133 655-818 11-167 (210)
32 1wa5_B Importin alpha subunit; 76.4 26 0.00088 40.2 14.6 206 657-903 89-328 (530)
33 2z6g_A B-catenin; FULL-length, 75.7 43 0.0015 40.7 16.9 240 660-929 403-692 (780)
34 2vgl_A Adaptor protein complex 73.4 31 0.0011 40.8 14.4 239 667-928 122-388 (621)
35 1qgr_A Protein (importin beta 73.0 79 0.0027 38.3 18.6 60 660-721 370-438 (876)
36 3ul1_B Importin subunit alpha- 72.1 77 0.0026 36.1 17.1 208 660-903 105-345 (510)
37 2jdq_A Importin alpha-1 subuni 68.8 68 0.0023 35.2 15.4 204 660-903 69-305 (450)
38 2qk2_A LP04448P; mini spindles 66.6 43 0.0015 33.8 12.1 58 660-720 20-86 (242)
39 4ady_A RPN2, 26S proteasome re 66.0 2.2E+02 0.0075 35.2 19.6 198 670-914 451-651 (963)
40 2z6h_A Catenin beta-1, beta-ca 65.4 79 0.0027 37.1 15.8 238 659-927 266-554 (644)
41 3tpo_A Importin subunit alpha- 64.9 1.1E+02 0.0039 34.8 16.6 209 659-903 123-364 (529)
42 1u6g_C TIP120 protein, CAND1; 64.8 21 0.00071 45.9 11.2 236 660-928 11-274 (1230)
43 4b8j_A Importin subunit alpha- 61.8 39 0.0014 38.5 11.9 206 659-903 121-358 (528)
44 2y3u_A Collagenase, collagenas 61.0 4.1 0.00014 49.1 3.2 105 276-382 338-468 (785)
45 4ady_A RPN2, 26S proteasome re 59.8 78 0.0027 39.1 14.1 133 657-820 543-678 (963)
46 4db8_A Armadillo-repeat protei 59.5 64 0.0022 32.3 11.8 129 661-817 59-208 (252)
47 4fdd_A Transportin-1; heat rep 54.7 78 0.0027 38.6 13.5 61 658-720 361-429 (852)
48 1u4g_A Elastase, pseudolysin; 54.3 74 0.0025 33.7 11.2 104 277-391 72-181 (301)
49 2vqx_A Metalloproteinase; ther 51.9 90 0.0031 33.7 11.5 107 276-390 88-202 (341)
50 2z6h_A Catenin beta-1, beta-ca 49.6 1.9E+02 0.0065 33.8 15.4 208 658-903 59-292 (644)
51 3cqb_A Probable protease HTPX 49.3 20 0.00068 31.8 5.0 16 345-360 83-98 (107)
52 3tjz_B Coatomer subunit gamma; 49.1 84 0.0029 34.2 11.0 61 841-906 257-319 (355)
53 1bqb_A Protein (aureolysin); h 48.8 86 0.0029 33.2 10.6 98 278-383 67-177 (301)
54 3l9t_A Putative uncharacterize 46.1 32 0.0011 35.2 6.5 122 660-788 75-219 (240)
55 2bpt_A Importin beta-1 subunit 44.2 2.1E+02 0.0072 34.3 15.0 134 660-816 373-527 (861)
56 1jdh_A Beta-catenin; beta-cate 42.8 3.9E+02 0.013 29.7 17.4 207 659-903 63-295 (529)
57 3ul1_B Importin subunit alpha- 42.8 51 0.0017 37.7 8.5 53 666-720 326-387 (510)
58 2of3_A ZYG-9; multifunctional 42.4 98 0.0033 32.2 9.7 50 852-904 185-237 (266)
59 3dnz_A Thermolysin; hydrolase, 41.4 1.4E+02 0.0049 31.7 10.9 102 276-385 68-177 (316)
60 4ger_A Gentlyase metalloprotea 41.0 1.3E+02 0.0044 31.9 10.4 101 277-385 62-170 (304)
61 1jdh_A Beta-catenin; beta-cate 40.8 4E+02 0.014 29.6 15.8 70 666-737 111-196 (529)
62 1wa5_B Importin alpha subunit; 39.5 68 0.0023 36.6 9.0 15 705-719 397-411 (530)
63 4hxt_A De novo protein OR329; 38.8 1.6E+02 0.0054 29.0 10.7 56 663-720 135-199 (252)
64 4db6_A Armadillo repeat protei 38.0 43 0.0015 32.6 6.1 59 660-720 58-125 (210)
65 3tpo_A Importin subunit alpha- 37.4 62 0.0021 37.1 8.1 57 662-720 341-406 (529)
66 4b8j_A Importin subunit alpha- 36.6 75 0.0026 36.1 8.7 15 705-719 385-399 (528)
67 3grl_A General vesicular trans 36.4 8.9 0.00031 45.1 0.7 206 646-902 111-341 (651)
68 4fdd_A Transportin-1; heat rep 36.2 3.1E+02 0.011 33.1 14.7 125 690-838 360-493 (852)
69 1u6g_C TIP120 protein, CAND1; 34.1 1.8E+02 0.0062 37.0 12.6 213 660-902 53-283 (1230)
70 2xl1_A Arginine attenuator pep 31.6 19 0.00065 22.2 1.2 13 934-946 11-23 (26)
71 1ibr_B P95, importin beta-1 su 31.2 3.6E+02 0.012 29.1 13.1 213 666-902 11-245 (462)
72 2z6g_A B-catenin; FULL-length, 31.2 2.3E+02 0.0077 34.2 12.1 106 691-818 362-472 (780)
73 3opb_A SWI5-dependent HO expre 30.6 1.9E+02 0.0063 34.9 10.7 157 690-863 458-635 (778)
74 2qk1_A Protein STU2; STU2P, XM 29.4 4.5E+02 0.015 26.4 13.7 178 660-901 21-218 (249)
75 2jdq_A Importin alpha-1 subuni 29.2 1.6E+02 0.0053 32.2 9.5 13 706-718 333-345 (450)
76 2bpt_A Importin beta-1 subunit 28.7 1.4E+02 0.0049 35.9 9.8 210 690-920 598-835 (861)
77 2qk2_A LP04448P; mini spindles 28.2 1.5E+02 0.005 29.6 8.4 60 659-720 60-127 (242)
78 3oc3_A Helicase MOT1, MOT1; re 27.0 6E+02 0.021 29.6 13.2 131 779-932 297-430 (800)
79 3c37_A Peptidase, M48 family; 26.0 48 0.0016 34.2 4.1 54 304-361 63-116 (253)
80 3tjz_B Coatomer subunit gamma; 25.7 5.5E+02 0.019 27.7 12.6 216 664-927 76-305 (355)
81 3nqx_A MCP-02, secreted metall 24.5 3.8E+02 0.013 28.3 10.6 103 277-390 73-181 (306)
82 3now_A UNC-45 protein, SD10334 23.6 2.5E+02 0.0086 34.1 10.3 171 691-903 497-694 (810)
83 1xqr_A HSPBP1 protein; armadil 22.7 2.5E+02 0.0085 29.4 9.1 133 660-819 86-239 (296)
84 1xqr_A HSPBP1 protein; armadil 22.2 5.3E+02 0.018 26.8 11.6 161 668-862 52-237 (296)
No 1
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=100.00 E-value=1.8e-74 Score=707.55 Aligned_cols=537 Identities=12% Similarity=0.124 Sum_probs=419.2
Q ss_pred CCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcC-CcceEEEeccCceeeEEEEcCeeee----eeeCCCCcccchhhh
Q 002253 14 VENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-DIGIVGLHAENLGIESVLVDGEPTE----FEYYPHNHQNVENEK 88 (947)
Q Consensus 14 ~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~~~~I~L~a~~l~I~~V~v~g~~~~----f~~~~~~~~~~~~~~ 88 (947)
.+++++.+.||+|++++|+++++++|+++|++.+. +++.|.||+++|+|.+|+|||+++. |.+.+
T Consensus 9 y~~~~~~V~h~~L~l~ld~~~~~v~G~~~i~~~~~~~~~~l~LD~~~L~I~sV~vnG~~l~~~~~~~~~~---------- 78 (889)
T 3ebh_A 9 YKPSGFIINQVTLNINIHDQETIVRSVLDMDISKHNVGEDLVFDGVGLKINEISINNKKLVEGEEYTYDN---------- 78 (889)
T ss_dssp CCCCSEEEEEEEEEEEECSSCEEEEEEEEEEECTTCCSCCEEEECCSCEEEEEEETTEECCBTTTEEECS----------
T ss_pred CCCCCcEEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCceEEEECCCCEEEEEEECCEEcCcccceEecC----------
Confidence 36788999999999999999999999999998753 4789999999999999999998753 33321
Q ss_pred hccccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEEec---
Q 002253 89 RWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK--- 165 (947)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~--- 165 (947)
..|.|.++. ++. ....+.|.|....
T Consensus 79 -----------------------------~~L~I~l~~----l~~-------------------~~~~l~I~y~~~p~~~ 106 (889)
T 3ebh_A 79 -----------------------------EFLTIFSKF----VPK-------------------SKFAFSSEVIIHPETN 106 (889)
T ss_dssp -----------------------------SEEEECGGG----SCS-------------------SSEEEEEEEEECGGGC
T ss_pred -----------------------------CEEEEecCC----CCC-------------------CcEEEEEEEEecCccC
Confidence 136664321 110 0123445554431
Q ss_pred -CCcceEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEecCCC
Q 002253 166 -VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVP 242 (947)
Q Consensus 166 -~~~G~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~-~-~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p 242 (947)
.-.|+++.+.+++|||||.+||+||||+|+|+.||||+++|++|++ | +++|||+++++.. .++++++++|..++|
T Consensus 107 ~~l~Gly~s~~~~~TQ~Ep~~AR~~fPC~DeP~~KAtf~itIt~p~~~~~valSNg~l~~~~~--~~~g~~~~~f~~t~p 184 (889)
T 3ebh_A 107 YALTGLYKSKNIIVSQCEATGFRRITFFIDRPDMMAKYDVTVTADKEKYPVLLSNGDKVNEFE--IPGGRHGARFNDPPL 184 (889)
T ss_dssp TTCSEEEEETTEEEEECTTTTGGGTSCBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--ETTTEEEEEEEEEEE
T ss_pred CCceeeEEECCeEEEcccCCCCCEEEEEcCCCCcceEEEEEEEEccccCeEEEccCcccccee--cCCCeEEEEEecCCc
Confidence 1136766667899999999999999999999999999999999997 8 5799999987653 246789999999999
Q ss_pred CcceeeEEEEecceeeecC-----CC--CeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCc
Q 002253 243 VSAKWITLAVAPFEVLPDH-----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMA 315 (947)
Q Consensus 243 ~s~yliafaVG~F~~~~~~-----~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~ 315 (947)
||+|++||+||+|+.+++. .+ .++++|++|+..+.++++++.++++++|||++||++|||+||++|++|++..
T Consensus 185 mstYLvA~~vG~f~~~~~~~~t~~~G~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~kyd~VavPdF~~ 264 (889)
T 3ebh_A 185 KPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNV 264 (889)
T ss_dssp ECGGGCCEEEECEEEEEEEEECSSSCCEEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSS
T ss_pred cchhheeeEEecceEEeeeeeecCCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCCCceEEEEeccccc
Confidence 9999999999999988653 23 4689999999999999999999999999999999999999999999998777
Q ss_pred ccccccccchhhcc-cccccCcccc-chhh-HHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCc
Q 002253 316 VSSSTFGAAMGIFS-SQILYDEKVI-DQAI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNN 392 (947)
Q Consensus 316 ~~~~~~gagl~~~~-~~lL~~~~~~-d~~~-~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~ 392 (947)
++|+++ ||++|+ ..+|+++... +... ....+||||+|||||||+|||+||+|+|||||||+|++.++.++..|..
T Consensus 265 GaMEN~--GLvtf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~ 342 (889)
T 3ebh_A 265 GAMENK--GLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTV 342 (889)
T ss_dssp SEECCT--TEEEEEGGGTCCCTTTSCTHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hhhcCC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHhcCHH
Confidence 899999 788895 5678877643 2222 2345899999999999999999999999999999999999999998887
Q ss_pred hHHHHHHHhhcc-hhhcccCCCcccCCCCccccCCC---CcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHh
Q 002253 393 EARYRRYKANCA-VCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISR 468 (947)
Q Consensus 393 e~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~ 468 (947)
..++........ ....| .+ +..+++.+ .++.+.|+.++|.||++|||||+..||++.|+++|+.|+++
T Consensus 343 ~~r~~~~~~lr~~~~~~D-~~-------~~shPI~~~~~~ei~~~f~~i~Y~KGa~vLrML~~~lGde~F~~gLr~Yl~~ 414 (889)
T 3ebh_A 343 TTRLSHVDLLRSVQFLED-SS-------PLSHPIRPESYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKK 414 (889)
T ss_dssp HHHHHHHHHHHHHHHHHH-TS-------TTCCCSSCSEESCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhc-cC-------ccCCCCCCcchhhhhhhccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 654432211110 01111 11 12223321 23556789999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHhcC----CCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCC
Q 002253 469 AQGASPVRTLSTKEFRHFANKVGN----LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTP 544 (947)
Q Consensus 469 ~~~~~~~~~~st~~F~~~~e~v~~----~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~ 544 (947)
|++++ ++++||.+.+++++. ..|.||.. |++|++++|+|+++|+.+++.+++.++++|+|.......
T Consensus 415 ~~~~n----att~Df~~ale~as~~~~~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~~~~~~ltl~Q~~~~~~~---- 485 (889)
T 3ebh_A 415 NDGNT----ATCEDFNYAMEQAYKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDEN---- 485 (889)
T ss_dssp HTTSE----ECHHHHHHHHHHHHHHHHTCTTCCCTG-GGHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCCSS----
T ss_pred cCCCC----CCHHHHHHHHHHHhhhccCCCCCCHHH-HHHHhcCCCCceEEEEEeecCCCCEEEEEEEEecCCCCC----
Confidence 99985 799999999988761 01357875 689999999999999999998778888999887532110
Q ss_pred cccCCCCCCCCCCCCCcceeEEEEEecc-CCc-c--cccccccCCCcceEEEeeeccchhhhhhcCCCCCCCCCCCCCCC
Q 002253 545 VLSSNTDSENRDGDIGWPGMMSIRVHEL-DGM-Y--DHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNG 620 (947)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~gp~tiri~e~-dGt-~--~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~ 620 (947)
......|.+|++|.+... +|. . .++ +.+ .+..+.|.++.
T Consensus 486 ----------~~~~~~~~IPl~v~l~~~~~G~~~~~~~~-l~l-~~~~q~f~~~~------------------------- 528 (889)
T 3ebh_A 486 ----------QKEKKPLFIPISVGLINPENGKEMISQTT-LEL-TKESDTFVFNN------------------------- 528 (889)
T ss_dssp ----------CSSCCCCCEEEEEEEECTTTCCBCSCCEE-EEE-CSSEEEEEESC-------------------------
T ss_pred ----------CCCCceEEEEEEEEEEeCCCCccccceeE-EEe-cCCcEEEEEcC-------------------------
Confidence 012347999999999887 776 2 232 222 22223344320
Q ss_pred CcccccccccCCCCCceEEEecCCCceeeEeeccCchhHHHHHHhhcCChHHHHHHHHHHHc
Q 002253 621 DAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEA 682 (947)
Q Consensus 621 d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~ 682 (947)
+ .+.| |+-++++|.-..+++.+.++.++..||++|.|..+|.||++.|..
T Consensus 529 --~--------~~~p--~~sl~r~fsa~v~l~~~~~~~~l~~l~~~d~d~~~r~~a~~~l~~ 578 (889)
T 3ebh_A 529 --I--------AVKP--IPSLFRGFSAPVYIEDQLTDEERILLLKYDSDAFVRYNSCTNIYM 578 (889)
T ss_dssp --C--------CSCC--EEEESTTCCSSSEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred --C--------CCCC--eEEEcCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHH
Confidence 0 0122 457999999999999999999999999999999999999988864
No 2
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=100.00 E-value=4.3e-74 Score=709.10 Aligned_cols=562 Identities=15% Similarity=0.185 Sum_probs=425.7
Q ss_pred CCCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEeccCceeeEEEEcCeee-eeeeCCCCcccchhhhhc
Q 002253 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPT-EFEYYPHNHQNVENEKRW 90 (947)
Q Consensus 12 p~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~-~f~~~~~~~~~~~~~~~~ 90 (947)
+....+++.+.||+|++++++++.+++|+++|++...+++.|.||+++|+|.+|++||+++ .|+..+.
T Consensus 32 ~~y~~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~l~Ld~~~L~I~sV~v~G~~l~~y~~~~~----------- 100 (891)
T 3b34_A 32 HDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVRHGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEG----------- 100 (891)
T ss_dssp GGCCCCSEEEEEEEEEEECCSSCEEEEEEEEEEECSCTTCCEEEECSSCEEEEEEETTEECCSEEEETT-----------
T ss_pred hhCCCCCceeEEEEEEEEEECCceEEEEEEEEEEccCCCCEEEEECCCCEEEEEEEcCEEcceEEeeCC-----------
Confidence 3446688999999999999999999999999987654567899999999999999999887 5554321
Q ss_pred cccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEEe----cC
Q 002253 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE----KV 166 (947)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~----~~ 166 (947)
.|.|. + ++. ...+.|.|... ..
T Consensus 101 ----------------------------~L~I~---~---lp~--------------------~~~l~I~y~~~p~~~~~ 126 (891)
T 3b34_A 101 ----------------------------ALVIS---N---LPE--------------------RFTLKIINEISPAANTA 126 (891)
T ss_dssp ----------------------------EEEEC---S---CCS--------------------EEEEEEEEEECGGGCCS
T ss_pred ----------------------------EEEEE---e---CCC--------------------eEEEEEEEEEeecccCC
Confidence 35552 0 110 11234444432 11
Q ss_pred CcceEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEecCCCCc
Q 002253 167 EVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVS 244 (947)
Q Consensus 167 ~~G~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~-~-~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s 244 (947)
..|+++.+.+++|||||++||+||||+|+|+.||+|+++|++|++ | +++|||+++++.. .++++++++|..++|||
T Consensus 127 l~Gly~s~~~~~Tq~Ep~~AR~~fPc~DeP~~kAtf~itI~~p~~~y~~alSNg~l~~~~~--~~~g~~~~~f~~t~pms 204 (891)
T 3b34_A 127 LEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGE--LENGRHWVQWQDPFPKP 204 (891)
T ss_dssp CCEEEEETTEEEEECTTTTGGGTSSBCCSTTCCEEEEEEEEEETTTCCEEEESSEEEEEEE--CSTTEEEEEEEEEEEEC
T ss_pred CceEEEeCCEEEeccccCCCCccccCCCCcccceEEEEEEEeccccceEEEeCCcccccee--ecCCeEEEEEEeCCCcc
Confidence 246666667889999999999999999999999999999999997 6 9999999987653 35678999999999999
Q ss_pred ceeeEEEEecceeeecC----CC--CeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccc
Q 002253 245 AKWITLAVAPFEVLPDH----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSS 318 (947)
Q Consensus 245 ~yliafaVG~F~~~~~~----~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~ 318 (947)
+|++||+||+|+.+++. .+ .++++|++|+..+.++++++.+.++++|||++||++|||++|++|++|++..++|
T Consensus 205 tYL~A~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~diVavPdf~~GaM 284 (891)
T 3b34_A 205 CYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAM 284 (891)
T ss_dssp GGGCCEEEECCEEEEEEEECTTCCEEEEEEEECTTCGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESCCSSSEE
T ss_pred ceeeEEEeccceEEeeeeeccCCCceEEEEEeccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCcCcc
Confidence 99999999999998752 22 5799999999999999999999999999999999999999999999998777899
Q ss_pred cccccchhhcc-cccccCccccc-hh-hHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHH
Q 002253 319 STFGAAMGIFS-SQILYDEKVID-QA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEAR 395 (947)
Q Consensus 319 ~~~gagl~~~~-~~lL~~~~~~d-~~-~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~ 395 (947)
+++ |+++|+ ..+|+++.... .. .....+||||+|||||||+|||+||+|+|||||||+|++.+++++..|....+
T Consensus 285 En~--GLitf~e~~lL~~~~~~t~~~~~~i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~ 362 (891)
T 3b34_A 285 ENK--GLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNR 362 (891)
T ss_dssp CCT--TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred ccC--ceeEecccccccCcccCcHHHHHHHHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHHhCHHHHH
Confidence 999 788885 56788776433 22 22346899999999999999999999999999999999999999887755433
Q ss_pred HHHHHhhcchhhcccCCCcccCCCCccccCCC---CcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCC
Q 002253 396 YRRYKANCAVCKADDSGATALSSSASCKDLYG---TQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGA 472 (947)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~---~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~ 472 (947)
+.............+.+ +..+++.+ .++...|+.++|.||++|||||+..||++.|+++|+.|+++++++
T Consensus 363 ~~~~~~l~~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~VLrML~~~lG~e~F~~gLr~Yl~~~~~~ 435 (891)
T 3b34_A 363 INNVRTMRGLQFAEDAS-------PMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGS 435 (891)
T ss_dssp HHHHHHHHHTHHHHHTS-------TTCCCSSCSEESCGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHhhhhhhcc-------ccCCCCccccccccccccccchhhHHHHHHHHHHHHHCHHHHHHHHHHHHHhccCC
Confidence 32211111000011111 11222221 234567889999999999999999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCC
Q 002253 473 SPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDS 552 (947)
Q Consensus 473 ~~~~~~st~~F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~ 552 (947)
+ +++++|.+.++++++ .|+.+ |++|++++|+|.++|+..++.+++.++++++|......
T Consensus 436 ~----att~Df~~ale~~sg---~dL~~-f~~W~~q~G~P~l~V~~~~~~~~~~~~ltl~Q~~~~~~------------- 494 (891)
T 3b34_A 436 A----ATCDDFVQAMEDASN---VDLSH-FRRWYSQSGTPIVTVKDDYNPETEQYTLTISQRTPATP------------- 494 (891)
T ss_dssp E----ECHHHHHHHHHHHHC---CCCTT-TTHHHHCCSCCEEEEEEEEETTTTEEEEEEEEECCCBT-------------
T ss_pred C----CCHHHHHHHHHHHhC---CCHHH-HHHHHcCCCCceEEEEEEeecCCCEEEEEEEEecCCCC-------------
Confidence 5 799999999999984 57888 47999999999999999998777777788777542110
Q ss_pred CCCCCCCCcceeEEEEEeccCCcccccccccCCCc-ceEEEeeeccchhhhhhcCCCCCCCCCCCCCCCCcccccccccC
Q 002253 553 ENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDA-WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSS 631 (947)
Q Consensus 553 ~~~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~-~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~ 631 (947)
.......|++|+++.+.+.||... .+ .+.+.. ..++.+. +.+...+ +...
T Consensus 495 -~~~~~~~~~iPi~v~l~~~~G~~~-~~-~~~~~~~~~~~~l~--------------------~~~~~~~-~~~v----- 545 (891)
T 3b34_A 495 -DQAEKQPLHIPFAIELYDNEGKVI-PL-QKGGHPVNSVLNVT--------------------QAEQTFV-FDNV----- 545 (891)
T ss_dssp -TBSCCCCCCEEEEEEEECTTSCBC-CC-EETTEECCSEEEEC--------------------SSEEEEE-ECCC-----
T ss_pred -CCCCCceEEEEEEEEEEcCCCCcc-cc-cccccccceEEEec--------------------CCcEEEE-EccC-----
Confidence 001234799999999998888631 11 011110 0011110 0000000 0000
Q ss_pred CCCCceEEEecCCCceeeEeeccCchhHHHHHHhhcCChHHHHHHHHHHHcC-------------C-CCchhHHhHHHhh
Q 002253 632 MESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL-------------P-HLSFNVVNTLNNF 697 (947)
Q Consensus 632 ~~~~~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~-------------~-~~s~~~~~~L~~~ 697 (947)
.+.| ||++|+++....+|++++++++|+.||++|+|+.+|.||++.|.+. + ..+...+.++..+
T Consensus 546 ~~~P--~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (891)
T 3b34_A 546 YFQP--VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAV 623 (891)
T ss_dssp CSCC--EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred CCCC--cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCcCccHHHHHHHHHH
Confidence 1233 8999999999999999999999999999999999999999888753 1 1123466777777
Q ss_pred hccC
Q 002253 698 LSDS 701 (947)
Q Consensus 698 l~d~ 701 (947)
|.|+
T Consensus 624 l~~~ 627 (891)
T 3b34_A 624 LLDE 627 (891)
T ss_dssp HHCS
T ss_pred hcCC
Confidence 7764
No 3
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=100.00 E-value=2.7e-72 Score=701.40 Aligned_cols=603 Identities=16% Similarity=0.189 Sum_probs=431.2
Q ss_pred CCCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhc
Q 002253 12 TKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRW 90 (947)
Q Consensus 12 p~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~ 90 (947)
.++....++|.||+|.|++|+++.+|+|.|+|++.+ .+++.|.||+++|+|.+|+|++....-..... ..+. .
T Consensus 66 ~~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~-~~~~---~-- 139 (967)
T 3se6_A 66 ELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPG-KELK---V-- 139 (967)
T ss_dssp CSSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSC-EECE---E--
T ss_pred cccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCccccccc-ceee---e--
Confidence 356778899999999999999999999999999987 56899999999999999998632210000000 0000 0
Q ss_pred cccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCc-cEEEEEEEEEecCCcc
Q 002253 91 RSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVG 169 (947)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~i~y~~~~~~~G 169 (947)
..-.....|.|.++. .++.|. .+++ .+.|+|.+... .|+++..|... +|
T Consensus 140 ---------------------~~~~~~~~l~i~l~~---~L~~g~-~~~l--~i~y~g~~~~~~~G~y~s~y~~~---~g 189 (967)
T 3se6_A 140 ---------------------LSYPAHEQIALLVPE---KLTPHL-KYYV--AMDFQAKLGDGFEGFYKSTYRTL---GG 189 (967)
T ss_dssp ---------------------EEEGGGTEEEEECSS---CCCTTC-CEEE--EEEEEEECBSSSSEEEEEEEECT---TS
T ss_pred ---------------------EEecCCCEEEEEcCC---ccCCCC-eEEE--EEEEEEecCCCccceeeeeeEcC---CC
Confidence 000001136665432 232222 1233 35677877653 58898888642 34
Q ss_pred eEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeeE
Q 002253 170 IHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (947)
Q Consensus 170 ~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~ylia 249 (947)
. ..++++||+||.+||+||||+|+|+.||||+|+|++|++|+|+|||++.++.. .++++++++|..++|||+|++|
T Consensus 190 ~--~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~F~~t~pmstYLva 265 (967)
T 3se6_A 190 E--TRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIE--LEGGLLEDHFETTVKMSTYLVA 265 (967)
T ss_dssp C--EEEEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEECTTCEEEESSCEEEEEE--CTTSCEEEEECCCCSBCGGGCC
T ss_pred c--eEEEEEEecccCCCCeEEEecCCcCceeEEEEEEEECCCcEEEeCCCccccee--cCCCeEEEEEecCCCccceeEE
Confidence 2 24678999999999999999999999999999999999999999999976543 4568899999999999999999
Q ss_pred EEEecceeeecC--CCCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhh
Q 002253 250 LAVAPFEVLPDH--HQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGI 327 (947)
Q Consensus 250 faVG~F~~~~~~--~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~ 327 (947)
|+||+|+.++.. .+.++++|++|+..+.++++++.+.++++|||++||+||||+||++|++|++..++|++| ||++
T Consensus 266 ~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~GaMEn~--Glit 343 (967)
T 3se6_A 266 YIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENW--GLIT 343 (967)
T ss_dssp EEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHHHHHHHHHHHHHHTCCCCSSEEEEEEESSCSSSEECCT--TEEE
T ss_pred EEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccEEEecCCCCcccccC--Cccc
Confidence 999999998753 467899999999999999999999999999999999999999999999998778899999 7899
Q ss_pred cc-cccccCccccchhh--HHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHHhhcc
Q 002253 328 FS-SQILYDEKVIDQAI--DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (947)
Q Consensus 328 ~~-~~lL~~~~~~d~~~--~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~~~~~ 404 (947)
++ +.+|++++..+... ....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|.....-........
T Consensus 344 y~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~~~ 423 (967)
T 3se6_A 344 YRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFE 423 (967)
T ss_dssp EEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred cchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 95 56888887543322 2346899999999999999999999999999999999999999998865431000111111
Q ss_pred hhhcccCCCcccCCCCccccCC-CCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCCHHHH
Q 002253 405 VCKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEF 483 (947)
Q Consensus 405 ~~~~~~~~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F 483 (947)
.+..|.. ..+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||
T Consensus 424 al~~D~~----~~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL~mL~~~lG~e~F~~gLr~Yl~~~~~~n----at~~Dl 495 (967)
T 3se6_A 424 VITKDSL----NSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRN----AKNDDL 495 (967)
T ss_dssp HHTTTTS----TTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHH
T ss_pred HHHhhcc----cCCCCceeecCCHHHHHHhcchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCC----CCHHHH
Confidence 1111110 00111112221 22345679999999999999999999999999999999999999996 689999
Q ss_pred HHHHHHhcC------------------------CCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCC
Q 002253 484 RHFANKVGN------------------------LERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKP 539 (947)
Q Consensus 484 ~~~~e~v~~------------------------~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~ 539 (947)
.+.++++.. .++.++++||++|+.|+|+|+++|+.. ++.+.++|+|+.....
T Consensus 496 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~~q~G~Pvl~V~~~----~~~~~l~Q~rf~~~~~ 571 (967)
T 3se6_A 496 WSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQD----GCSLRLQQERFLQGVF 571 (967)
T ss_dssp HHHHHCC-------------------------CCCCCCHHHHHHHHHHSCSCEEEEEEEE----TTEEEEEEEECCCC--
T ss_pred HHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHhcCCCCcEEEEEec----CCEEEEEeeeecCCCC
Confidence 999887521 146799999999999999999999872 4578888888754221
Q ss_pred CCCCCcccCCCCCCCCCCCCCcceeEEEEEeccCCcccccccccCCCcceEEEeeeccchhhhhhcCCCCCCCCCCCCCC
Q 002253 540 DSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDN 619 (947)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~ 619 (947)
... ++.........|++|+++.... +++....+ +. .....+++
T Consensus 572 ~~~-------~~~~~~~~~~~W~IPl~~~~~~-~~~~~~~~--l~-~~~~~i~~-------------------------- 614 (967)
T 3se6_A 572 QED-------PEWRALQERYLWHIPLTYSTSS-SNVIHRHI--LK-SKTDTLDL-------------------------- 614 (967)
T ss_dssp ----------------CCSCCCCCCEEEEESS-CCCCEEEC--CC-SSEEEEEC--------------------------
T ss_pred CCc-------cccccccCCceEEEEEEEEeCC-CCccceEE--ec-CCceEEec--------------------------
Confidence 100 0000001235799999987542 22211111 11 00000000
Q ss_pred CCcccccccccCCCCCceEEEecCCCceeeEeeccCc-hhHHHHHHhhcC---ChHHHHHHH---HHHHcCCCCchhHHh
Q 002253 620 GDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQAQAI---AALEALPHLSFNVVN 692 (947)
Q Consensus 620 ~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp-~~m~~~QL~~dr---dv~aq~eAi---~~l~~~~~~s~~~~~ 692 (947)
.++.+||.++++..=..+|+++.. +...+.||+.+. ++..|..-| -+|......+....-
T Consensus 615 -------------~~~~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l 681 (967)
T 3se6_A 615 -------------PEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKAL 681 (967)
T ss_dssp -------------SSCCSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred -------------cCCCceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 112369999999999999999975 667778887654 555554333 344443333433333
Q ss_pred HHHhhhccCcchhHHHHHHHHHHHhhc
Q 002253 693 TLNNFLSDSKAFWRVRIEAAYALANTA 719 (947)
Q Consensus 693 ~L~~~l~d~~~f~~VR~~Aa~aL~~~~ 719 (947)
-|.+.|.+|. -|-+=..|...|..+.
T Consensus 682 ~l~~~l~~E~-~~~~w~~a~~~l~~l~ 707 (967)
T 3se6_A 682 DMTYYLQHET-SSPALLEGLSYLESFY 707 (967)
T ss_dssp HHTTGGGTCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHH
Confidence 4567788876 4556667777776543
No 4
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=100.00 E-value=2e-71 Score=694.12 Aligned_cols=589 Identities=15% Similarity=0.208 Sum_probs=418.3
Q ss_pred CCCCCCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CCcceEEEeccCceeeEEEEcCe---eeeeeeCCCCcccchh
Q 002253 11 ETKVENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PDIGIVGLHAENLGIESVLVDGE---PTEFEYYPHNHQNVEN 86 (947)
Q Consensus 11 ~p~~~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V~v~g~---~~~f~~~~~~~~~~~~ 86 (947)
..++....+.|.||+|+|++|+++.+|.|+++|++.+ .+++.|.||+++|+|.+|+|+|. ++.+..... .
T Consensus 5 ~~~rLp~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~v~~~~~~~~~~~~~~~----~-- 78 (897)
T 2xdt_A 5 NKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRKGAGERLSEEPLQV----L-- 78 (897)
T ss_dssp CCSSCCSSEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCEEEEEEECSSCEEEEEEEEEC----CEEEECEE----E--
T ss_pred ccCcCCCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEEcCCCEEEEEeCCCEEEEEEEEecCCccccccccee----E--
Confidence 3466778899999999999999999999999999986 45789999999999999999653 221111000 0
Q ss_pred hhhccccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCC-ccEEEEEEEEEec
Q 002253 87 EKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQ-NVKLVRIDYWVEK 165 (947)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~i~y~~~~ 165 (947)
.......|.|.++.+ ++.|. .+++ .+.|+|.+.. ..|+++..|..
T Consensus 79 --------------------------~~~~~~~l~i~l~~~---L~~g~-~~~L--~i~y~g~~~~~~~G~y~s~y~~-- 124 (897)
T 2xdt_A 79 --------------------------EHPRQEQIALLAPEP---LLVGL-PYTV--VIHYAGNLSETFHGFYKSTYRT-- 124 (897)
T ss_dssp --------------------------EETTTTEEEEEEEEE---ECTTC-CEEE--EEEEEEECBSSSSEEEEEEEEC--
T ss_pred --------------------------EcCCCcEEEEEeCCc---cCCCC-EEEE--EEEEEEEeCCCCceeEeeeeec--
Confidence 000112356654321 21221 1233 3567777654 35888888863
Q ss_pred CCcceEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcc
Q 002253 166 VEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (947)
Q Consensus 166 ~~~G~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~ 245 (947)
+ +|. .+++++||+||.+||+||||+|+|+.||+|+|+|++|++|+|+|||+++++.. .++++++++|..++|||+
T Consensus 125 ~-~g~--~~~~~~Tq~ep~~AR~~fPc~DeP~~Katf~itI~~p~~~~alSN~~~~~~~~--~~~g~~~~~f~~t~pmst 199 (897)
T 2xdt_A 125 K-EGE--LRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVT--VAEGLIEDHFDVTVKMST 199 (897)
T ss_dssp T-TSC--EEEEEEEECTTTTHHHHSCBCCSTTSCBEEEEEEEECTTCEEEESSCEEEEEE--EETTEEEEEECCCCSBCG
T ss_pred C-CCc--eeEEEEecceecccceEEeccCCccccCeEEEEEEEcCCceEecCCCccceEe--cCCCEEEEEEeCCCccch
Confidence 2 442 14678999999999999999999999999999999999999999999987543 245789999999999999
Q ss_pred eeeEEEEecceeeec--CCCCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccccccc
Q 002253 246 KWITLAVAPFEVLPD--HHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (947)
Q Consensus 246 yliafaVG~F~~~~~--~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (947)
|++||+||+|+.++. ..+.++++|++|+..+.++++++.+.++++||+++||+||||+||++|++|++..++|+++
T Consensus 200 YL~a~~vg~f~~~~~~~~~gv~v~v~~~~~~~~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~-- 277 (897)
T 2xdt_A 200 YLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENW-- 277 (897)
T ss_dssp GGCCEEEECCEEEEEECTTCCEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHTTCCCCSSEEEEEEESSCSSSEECCT--
T ss_pred hheEEEEEcceeeccccCCCeeEEEEcCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCccceeEEEeCCCcccchhcC--
Confidence 999999999999876 3457899999999999999999999999999999999999999999999998777899998
Q ss_pred chhhcc-cccccCccccchh--hHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q 002253 324 AMGIFS-SQILYDEKVIDQA--IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (947)
Q Consensus 324 gl~~~~-~~lL~~~~~~d~~--~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~ 400 (947)
||++++ +.+|+++...+.. .....+||||+|||||||+|||+||+|+|||||||+|++++++++.+|..........
T Consensus 278 glit~~e~~ll~~~~~~~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~f~~ 357 (897)
T 2xdt_A 278 GLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFG 357 (897)
T ss_dssp TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHCGGGCGGGGHHH
T ss_pred CeeEEeeeeEeECCCCCcHHHHHHHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 789995 5688988765432 2334589999999999999999999999999999999999999999876432100011
Q ss_pred hhcchhhcccCCCcccCCCCccccCC-CCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCC
Q 002253 401 ANCAVCKADDSGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLS 479 (947)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~s 479 (947)
.....+..|... .+.|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++
T Consensus 358 ~~~~a~~~D~~~----~~~Pi~~~v~~p~~i~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~gl~~Yl~~~~~~~----a~ 429 (897)
T 2xdt_A 358 KCFDAMEVDALN----SSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKN----TK 429 (897)
T ss_dssp HHHHHHHHHTST----TCCCSSCCCCSHHHHHHTSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTEE----EC
T ss_pred HHHHHHHhhccc----CCCCCEEeCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----CC
Confidence 111111111110 0111112222 22345679999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHhcC---------------C-C--------cccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeec
Q 002253 480 TKEFRHFANKVGN---------------L-E--------RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDC 535 (947)
Q Consensus 480 t~~F~~~~e~v~~---------------~-~--------~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~ 535 (947)
+++|.+.++++.. . + +.|+++||++|++++|+|+++|+.+ ++.+.++|+|+.
T Consensus 430 ~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~dl~~~~~~W~~q~G~P~l~v~~~----~~~~~l~Q~~f~ 505 (897)
T 2xdt_A 430 NEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVR----GRNVHMKQEHYM 505 (897)
T ss_dssp HHHHHHHHHTC----------------------------CCCHHHHHHHHHSSCSEEEEEEEEE----TTEEEEEEEEEC
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccccCCCCHHHHHHHhhcCCCceEEEEEEc----CCEEEEEEEEee
Confidence 9999999887511 1 1 5799999999999999999999875 356778888765
Q ss_pred cCCCCCCCCcccCCCCCCCCCCCCCcceeEEEEEeccCCcccccccccCCCcceEEEeeeccchhhhhhcCCCCCCCCCC
Q 002253 536 TVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDG 615 (947)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~ 615 (947)
..... .+ .....|++|+++.... ++.. + ++.+...+. .
T Consensus 506 ~~~~~--------~~-----~~~~~w~iPi~~~~~~-~~~~-~-----------~~~l~~~~~----~------------ 543 (897)
T 2xdt_A 506 KGSDG--------AP-----DTGYLWHVPLTFITSK-SDMV-H-----------RFLLKTKTD----V------------ 543 (897)
T ss_dssp CC------------------CCCCCCCEEEEEEESS-CSSC-E-----------EEEECSSEE----E------------
T ss_pred cCCCC--------CC-----CCCceEEEEEEEEeCC-CCcc-c-----------eEEecCCce----E------------
Confidence 32110 00 1134799999986421 1111 1 111110000 0
Q ss_pred CCCCCCcccccccccCCCCCceEEEecCCCceeeEeeccCc-hhHHHHHHhhcC---ChHHHH---HHHHHHHcCCCCch
Q 002253 616 CDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDG---DVVAQA---QAIAALEALPHLSF 688 (947)
Q Consensus 616 ~~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp-~~m~~~QL~~dr---dv~aq~---eAi~~l~~~~~~s~ 688 (947)
+ . ...+..||.+|++..-.++|+++.. +.....||+.+. ++..|. ..+-+|.+....+.
T Consensus 544 -------~---~----~~~~~~~i~~N~~~~gyyrV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~ 609 (897)
T 2xdt_A 544 -------L---I----LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSI 609 (897)
T ss_dssp -------E---E----CSSCCSCEEESGGGCSSCEEEECTTHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHTTTSSCH
T ss_pred -------E---E----ccCCCceEEECCCceEEEEEEcCHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHcCCCCH
Confidence 0 0 0122469999999999999999975 556777887655 554443 33344444322232
Q ss_pred hHHhHHHhhhccCcchhHHHHHHHHHH
Q 002253 689 NVVNTLNNFLSDSKAFWRVRIEAAYAL 715 (947)
Q Consensus 689 ~~~~~L~~~l~d~~~f~~VR~~Aa~aL 715 (947)
...--|.+.|.+|. =|-|-..|...|
T Consensus 610 ~~~l~l~~~l~~E~-~~~~w~~~~~~l 635 (897)
T 2xdt_A 610 EKALDLSLYLKHET-EIMPVFQGLNEL 635 (897)
T ss_dssp HHHHHHHGGGGGCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 22222445555543 333333333333
No 5
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=100.00 E-value=9.9e-71 Score=681.36 Aligned_cols=567 Identities=14% Similarity=0.128 Sum_probs=420.0
Q ss_pred CCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhccccCC
Q 002253 16 NSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVS 95 (947)
Q Consensus 16 ~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 95 (947)
.+++.+.||+|++++++++.+++|+++|+... +++.|.||+++ +|.+|++||+++.|+..+.
T Consensus 13 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~-~~~~i~Ld~~~-~I~sv~v~g~~~~~~~~~~---------------- 74 (867)
T 2gtq_A 13 TPAYHILKTDLHFDINEPQTVVKSRLTVEPQR-VGEPLVLDGSA-KLLSVKINGAAADYVLEGE---------------- 74 (867)
T ss_dssp CCSEEEEEEEEEEEECSSCEEEEEEEEEEESS-TTSCEEEECCS-EEEEEEETTEECCCEEETT----------------
T ss_pred CCCCceeEEEEEEEEECCcEEEEEEEEEEEeC-CCCEEEEecCC-CEEEEEECCeecceEeeCC----------------
Confidence 36789999999999999999999988888642 36789999999 9999999998876654421
Q ss_pred CCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEEe----cCCcceE
Q 002253 96 SPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVE----KVEVGIH 171 (947)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~----~~~~G~~ 171 (947)
.|.|. + ++.+ ...+.|.|... .+..|++
T Consensus 75 -----------------------~L~I~---~---lp~g-------------------~~~l~I~y~~~p~~~~~~~Gly 106 (867)
T 2gtq_A 75 -----------------------TLTIA---G---VPSE-------------------RFTVEVETEILPAENKSLMGLY 106 (867)
T ss_dssp -----------------------EEEES---C---CCSS-------------------CEEEEEEEEECGGGCCSCSEEE
T ss_pred -----------------------EEEEE---e---cCCC-------------------cEEEEEEEEEeccCCCCCcEEE
Confidence 35552 0 1100 11233444332 1124666
Q ss_pred eeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCC-e-EEEEcCceeeeeeccCCCCceEEEEecCCCCcceeeE
Q 002253 172 FDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQN-L-IAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWIT 249 (947)
Q Consensus 172 f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~-~-~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~ylia 249 (947)
+.+.+++|||||.+||+||||+|+|+.||||+++|++|++ | +++|||+++++.. .++++++++|+.++|||+|++|
T Consensus 107 ~s~~~~~Tq~ep~~AR~~fPc~DeP~~katf~itIt~p~~~y~~~lSNg~l~~~~~--~~~g~~~~~f~~t~pmstYL~A 184 (867)
T 2gtq_A 107 ASGGNLFTQCEPEGFRKITFYIDRPDVMSKFTTTIVADKKRYPVLLSNGNKIDGGE--FSDGRHWVKWEDPFSKPSYLFA 184 (867)
T ss_dssp EETTEEEEECTTTTGGGTSCBCCSTTCCBEEEEEEEEETTTCCEEEESSEEEEEEE--CTTSEEEEEEECCSCBCGGGCC
T ss_pred EECCEEEEeeccCCCceeeccCCCCCcceEEEEEEEEccccceEEEeCCcccccee--ecCCeEEEEEEeCCCcccccee
Confidence 6667899999999999999999999999999999999997 6 9999999987653 3567889999999999999999
Q ss_pred EEEecceeeecC----CC--CeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCccccccccc
Q 002253 250 LAVAPFEVLPDH----HQ--SLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGA 323 (947)
Q Consensus 250 faVG~F~~~~~~----~~--~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~ga 323 (947)
|+||+|+.+++. .+ .++++|++|+..+.++++++.++++++|||++||++|||++|++|++|++..++|+++
T Consensus 185 ~~vG~f~~~~~~~~t~~g~~v~l~vy~~p~~~~~~~~al~~~~~~l~~~e~~fG~pYP~~k~d~Vavpdf~~GaMEn~-- 262 (867)
T 2gtq_A 185 LVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFNMGAMENK-- 262 (867)
T ss_dssp EEEECCEEEEEEEECTTSCEEEEEEEECTTTGGGCHHHHHHHHHHHHHHHHHHCCCCCSSEEEEEEESSCSSSEECCT--
T ss_pred EEEecceEeeeceeccCCCceEEEEEeccccHHHHHHHHHHHHHHHHHHHHHhCCCCCCcceeEEEcCCCCccccccC--
Confidence 999999998752 22 5799999999999999999999999999999999999999999999998767899999
Q ss_pred chhhcc-cccccCccccch-hh-HHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q 002253 324 AMGIFS-SQILYDEKVIDQ-AI-DTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYK 400 (947)
Q Consensus 324 gl~~~~-~~lL~~~~~~d~-~~-~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~ 400 (947)
||++|+ +.+|++++.... .. ....+||||+|||||||+|||+||+|+|||||||+|++.+++++..|....++....
T Consensus 263 glitf~e~~ll~~~~~~~~~~~~~i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~~~~ 342 (867)
T 2gtq_A 263 GLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIR 342 (867)
T ss_dssp TEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CceeecccccccCcccCcHHHHHHHHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 788884 567888765432 22 234689999999999999999999999999999999999999988775433322111
Q ss_pred hhcchhhcccCCCcccCCCCccccCC---CCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCC
Q 002253 401 ANCAVCKADDSGATALSSSASCKDLY---GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRT 477 (947)
Q Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~l~---~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~ 477 (947)
.........+.+ +..+++. ..++...|+.++|.||++|||||+..||++.|+++|+.|++++++++
T Consensus 343 ~l~~~~~~~D~~-------~~~~Pi~~~~~~~i~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~glr~Yl~~~~~~~---- 411 (867)
T 2gtq_A 343 LLRQHQFPEDAG-------PTAHPVRPASYEEMNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQA---- 411 (867)
T ss_dssp HHHHHHHHHHHS-------TTCCCSSCSEESCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE----
T ss_pred HHHHHhhhhccC-------ccCCCCcCCChhhhhhhccchhhhHHHHHHHHHHHHHCHHHHHHHHHHHHHHhCCCC----
Confidence 110000011111 1112221 12345678889999999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHHhcCCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCCCC
Q 002253 478 LSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 557 (947)
Q Consensus 478 ~st~~F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~ 557 (947)
+++++|.+.+++++ |.|+.+| ++|++++|+|.++|+..+++ +.++++++|...... +...
T Consensus 412 ~t~~Df~~~l~~~s---g~dl~~f-~~W~~q~G~P~l~v~~~~~~--~~~~l~l~Q~~~~~~--------------~~~~ 471 (867)
T 2gtq_A 412 VTCDDFRAAMADAN---GINLDQF-ALWYSQAGTPVLEAEGRLKN--NIFELTVKQTVPPTP--------------DMTD 471 (867)
T ss_dssp ECHHHHHHHHHHHH---TCCCGGG-GHHHHCCSCCEEEEEEEEET--TEEEEEEEEECCCBT--------------TBSC
T ss_pred CCHHHHHHHHHHHh---CCCHHHH-HHHhcCCCCceEEEEEEecC--CEEEEEEEEecCCCC--------------CCCC
Confidence 79999999999988 4688886 89999999999999998854 355566666532110 0012
Q ss_pred CCCcceeEEEEEeccCCcccccccccCCCc--ceEEEeeeccchhhhhhcCCCCCCCCCCCCCCCCcccccccccCCCCC
Q 002253 558 DIGWPGMMSIRVHELDGMYDHPILPMAGDA--WQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESP 635 (947)
Q Consensus 558 ~~~~~gp~tiri~e~dGt~~h~~~~~~~~~--~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~ 635 (947)
...|++|+++.+...+|.- ++. .+.++. ...+.+. . .+.... +.. ..+.|
T Consensus 472 ~~~~~iPi~~~~~~~~g~~-~~~-~~~~~~~~~~~~~l~--~------------------~~~~~~-~~~-----~~~~p 523 (867)
T 2gtq_A 472 KQPMMIPVKVGLLNRNGEA-VAF-DYQGKRATEAVLLLT--E------------------AEQTFL-LEG-----VTEAV 523 (867)
T ss_dssp CCCCCEEEEEEEECTTCCB-CCE-ECSSCEESCEEEEEC--S------------------SEEEEE-EBC-----CCSCC
T ss_pred CceEEEEEEEEEEcCCCcc-ccc-ccccccccceEEEEc--C------------------CceEEE-EeC-----CCCCC
Confidence 3479999999998877762 111 011111 0111110 0 000000 000 01223
Q ss_pred ceEEEecCCCceeeEeeccCchhHHHHHHhhcCChHHHHHHHHHHHcC-------------C-CCchhHHhHHHhhhccC
Q 002253 636 LSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEAL-------------P-HLSFNVVNTLNNFLSDS 701 (947)
Q Consensus 636 ~~wiriDpd~e~l~~v~~~qp~~m~~~QL~~drdv~aq~eAi~~l~~~-------------~-~~s~~~~~~L~~~l~d~ 701 (947)
|+.++++|....+++.++++.+|..||.+|.|..+|.+|++.|.+. . .....+..++..++.|+
T Consensus 524 --~~~l~r~fs~~~~l~~~~~~~~l~~l~~~~~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (867)
T 2gtq_A 524 --VPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTLYRRAVAANLATLSDGVELPKHEKLLAAVEKVISDD 601 (867)
T ss_dssp --EEEESTTCCSSCEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCS
T ss_pred --ceEecCCCCccEEEECCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhcCc
Confidence 7999999999999999999999999999999999999997655531 1 11234566677767565
Q ss_pred cchhHHHHHHHH
Q 002253 702 KAFWRVRIEAAY 713 (947)
Q Consensus 702 ~~f~~VR~~Aa~ 713 (947)
.--+.|+.++..
T Consensus 602 ~~d~~~~a~~l~ 613 (867)
T 2gtq_A 602 LLDNAFKALLLG 613 (867)
T ss_dssp SSCHHHHHHHTC
T ss_pred CCCHHHHHHHhc
Confidence 556667666655
No 6
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=100.00 E-value=6.5e-71 Score=691.08 Aligned_cols=546 Identities=15% Similarity=0.222 Sum_probs=395.3
Q ss_pred CCCCCCCcEEEEEEEEEEEeccC-----cEEEEEEEEEEEc-CCcceEEEeccCceeeEE----EEcCe---e-e---ee
Q 002253 12 TKVENSGAVVRHQKLCLSIDMEK-----HQIYGYTELEIAV-PDIGIVGLHAENLGIESV----LVDGE---P-T---EF 74 (947)
Q Consensus 12 p~~~~~~~~~~hy~l~L~id~~~-----~~~~G~v~I~i~~-~~~~~I~L~a~~l~I~~V----~v~g~---~-~---~f 74 (947)
.++....++|.||+|.|++|++. .+|+|.|+|++.+ .+++.|.||+++|+|.++ .+.+. . . ..
T Consensus 8 ~yRLP~~v~P~hY~l~L~~~l~~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (909)
T 4fke_A 8 RYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFLCQEPTDVIIIHSKKLNYTTQGHMVVLRGVGDSQVPEIDRT 87 (909)
T ss_dssp SSSCCSSEEEEEEEEEEEECCSCCSSSCCEEEEEEEEEEEESSCEEEEEEECCSCEECCSSSSCEEEESTTCCCCCEEEE
T ss_pred cccCcCCCEeEEEEEEEEEcCcCCCCCCceEEEEEEEEEEEecCCCEEEEEcCCCEEEeeeeEEEEecCCCcceecccce
Confidence 46788899999999999998753 5799999999987 568999999999999752 22211 0 0 01
Q ss_pred eeCCCCcccchhhhhccccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCc-
Q 002253 75 EYYPHNHQNVENEKRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN- 153 (947)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~- 153 (947)
++. .....|.|.++. .++.|. .+++ .+.|+|.+...
T Consensus 88 ~~~-------------------------------------~~~~~l~i~l~~---~l~~g~-~~~l--~i~y~g~~~~~~ 124 (909)
T 4fke_A 88 ELV-------------------------------------ELTEYLVVHLKG---SLQPGH-MYEM--ESEFQGELADDL 124 (909)
T ss_dssp EEE-------------------------------------TTTTEEEEEEEE---EECTTC-EEEE--EEEEEEECCSSS
T ss_pred EEe-------------------------------------cCCcEEEEEcCC---CcCCCC-EEEE--EEEEEEEECCCC
Confidence 111 011236665532 222222 1233 35678887754
Q ss_pred cEEEEEEEEEecCCcceEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeee-ccCCCCc
Q 002253 154 VKLVRIDYWVEKVEVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVL-SKDDPPR 232 (947)
Q Consensus 154 ~~~~~i~y~~~~~~~G~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~-~~~~~~~ 232 (947)
.|+++..|... ..+ .++++|||||.+||+||||+|+|+.||||+|+|++|++|+|+|||+++++.. ..+++++
T Consensus 125 ~G~y~s~y~~~--~~~----~~~~~Tqfep~~AR~~FPc~DeP~~KAtf~i~i~~p~~~~alSN~~~~~~~~~~~~~~~~ 198 (909)
T 4fke_A 125 AGFYRSEYMEG--NVK----KVLATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNW 198 (909)
T ss_dssp SEEEEEEEEET--TEE----EEEEEEECTTTTGGGTSCBCCSTTSCBEEEEEEEEETTSEEEESSCBSSSCEECTTCTTE
T ss_pred eEEEEeeEEEC--Cce----EEEEEEcCcccCcCEEEEeCCccccceEEEEEEEECCCCEEEcCCcccccccceecCCCe
Confidence 48999988642 222 5788999999999999999999999999999999999999999999876532 2356789
Q ss_pred eEEEEecCCCCcceeeEEEEecceeeecCC--CCeEEEEEcCCchhH--HHHHHHHHHHHHHHHHHHhCCCCCCCCccEE
Q 002253 233 KTYVYRLDVPVSAKWITLAVAPFEVLPDHH--QSLMSHICLPANVSK--IHNTVEFFHNAFSHYETYLDAKFPFGSYKQV 308 (947)
Q Consensus 233 ~t~~F~~t~p~s~yliafaVG~F~~~~~~~--~~~v~~~~~p~~~~~--~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V 308 (947)
++++|..++|||+|++||+||+|+.++... +.++++|++|+..+. ..++++.+.++++|||++||+||||+|+++|
T Consensus 199 ~~~~f~~t~pmstYL~a~~vg~f~~~~~~~~~g~~~~v~~~p~~~~~~~~~~al~~~~~~l~~~e~~~~~~Yp~~k~d~v 278 (909)
T 4fke_A 199 SVTEFETTPVMSTYLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQI 278 (909)
T ss_dssp EEEEBCCCCSBCGGGCCEEEESCEEEEEECTTSCEEEEEECHHHHHTTTTHHHHHHHHHHHHHHHHHTTSCCSSSEEEEE
T ss_pred EEEEEecCCCccceeeEEEecceEEEeeccCCCcEEEEEEecchhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccEE
Confidence 999999999999999999999999886643 578999999997654 4589999999999999999999999999999
Q ss_pred EeCCCCcccccccccchhhcc-cccccCccccchhhH--HHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHH
Q 002253 309 FLAPEMAVSSSTFGAAMGIFS-SQILYDEKVIDQAID--TSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFI 385 (947)
Q Consensus 309 ~vp~~~~~~~~~~gagl~~~~-~~lL~~~~~~d~~~~--~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~ 385 (947)
++|++..++|++| ||+++. +.+|++++....... ...+||||||||||||+|||+||+|+|||||||+|++++++
T Consensus 279 ~vpdf~~gaMEn~--glit~~e~~ll~d~~~s~~~~~~~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~~~~ 356 (909)
T 4fke_A 279 ALPDFNAGAMENW--GLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGA 356 (909)
T ss_dssp EETTCTTCEECCT--TEEEEEHHHHCCCTTTCCHHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcccccC--cccccccceeecCcccCChHHHHHHHHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHHHHH
Confidence 9998878899999 789994 668998876544332 34589999999999999999999999999999999999999
Q ss_pred HHHhCCchHHHHH-HHhhcchhhccc-CCCcccCCCCccccCC-CCcccccccchhhccHHHHHHHHHHHhChHHHHHHH
Q 002253 386 KKFLGNNEARYRR-YKANCAVCKADD-SGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKIL 462 (947)
Q Consensus 386 ~~~~G~~e~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L 462 (947)
++..|.....-.. ..........|. ....++.. + ..++. +.++...|+.++|.||++|||||++.||++.|+++|
T Consensus 357 ~~~~~~~~~~~~f~~~~~~~~~~~d~~~~~~pi~~-~-~~~v~~~~~i~~~fd~i~Y~KGa~vL~mL~~~lG~e~F~~gl 434 (909)
T 4fke_A 357 DHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTT-P-AEEVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGL 434 (909)
T ss_dssp HHHSTTSCGGGGHHHHTHHHHHHHHTSTTCCCSCC-C-GGGCCSHHHHHTTSSHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HhccccccHHHhhhhhHHHHHHHHhhhcccCCccc-c-ccccCChhhHHhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9998875432110 000111111111 11111110 0 01121 234566899999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHhcCCC-----cccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccC
Q 002253 463 QNIISRAQGASPVRTLSTKEFRHFANKVGNLE-----RPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTV 537 (947)
Q Consensus 463 ~~yl~~~~~~~~~~~~st~~F~~~~e~v~~~~-----~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~ 537 (947)
+.|++++++++ ++++||.+.++++++.. +.++++||++|++|+|+|+++|+.+ .+ .++|+|+...
T Consensus 435 ~~Yl~~~~~~n----a~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~W~~q~G~Pvv~V~~~----~~--~~~q~~~~~~ 504 (909)
T 4fke_A 435 ASYLHAFAYQN----TTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTK----TG--NISQKHFLLD 504 (909)
T ss_dssp HHHHHHHTTEE----ECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHHHHSSCSCEEEEEETT----TT--EEEEEECCSC
T ss_pred HHHHHhhcccC----CCHHHHHHHHHHHhCcccccccchhHHhHhhCccccCCCcEEEEEec----cC--cEEEEEEEec
Confidence 99999999996 68999999888876421 2469999999999999999999642 23 3677776533
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCcceeEEEEEeccCCccc-ccccccCCCcceEEEeeeccchhhhhhcCCCCCCCCCCC
Q 002253 538 KPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYD-HPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGC 616 (947)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e~dGt~~-h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~ 616 (947)
...... ........|.+|++... +|... +..+ . +. .. ..
T Consensus 505 ~~~~~~---------~~~~~~~~w~IPl~~~~---~~~~~~~~~~--~-~~---------~~------------~~---- 544 (909)
T 4fke_A 505 SESNVT---------RSSAFDYLWIVPISSIK---NGVMQDHYWL--R-DV---------SQ------------AQ---- 544 (909)
T ss_dssp TTCCCC---------SCCTTTTCCCEEECEEE---TTEECCCEEE--C-SC---------SE------------EE----
T ss_pred cCCCCC---------CCCCCCceEEEEEEEEe---CCCccceEEe--e-cc---------cc------------ce----
Confidence 221100 01122457999998653 23211 1100 0 00 00 00
Q ss_pred CCCCCcccccccccCCCCCceEEEecCCCceeeEeeccCc-hhHHHHHHhhcCChH
Q 002253 617 DDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQP-VQMWINQLEKDGDVV 671 (947)
Q Consensus 617 ~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v~~~qp-~~m~~~QL~~drdv~ 671 (947)
.+ + ....+..||.++++..-..+|+++.. +.+...||+.+.+.+
T Consensus 545 ---~~-~-------~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~L~~~~~~i 589 (909)
T 4fke_A 545 ---ND-L-------FKTASDDWVLLNVNVTGYFQVNYDEDNWRMIQHQLQTNLSVI 589 (909)
T ss_dssp ---CG-G-------GCCCTTCCEEESGGGCSSCEEEECHHHHHHHHHHHHHCGGGS
T ss_pred ---ee-e-------ccCCCCCeEEECCCceEEEEEecCHHHHHHHHHHHHhCcccC
Confidence 00 0 00122469999999999999999975 556778887665443
No 7
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=100.00 E-value=7.7e-70 Score=670.56 Aligned_cols=546 Identities=15% Similarity=0.204 Sum_probs=406.7
Q ss_pred cEEEEEEEEEEEeccCcEEEEEEEEEEEcCCcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhccccCCCCC
Q 002253 19 AVVRHQKLCLSIDMEKHQIYGYTELEIAVPDIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMVSSPS 98 (947)
Q Consensus 19 ~~~~hy~l~L~id~~~~~~~G~v~I~i~~~~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 98 (947)
+.|.||+|+|++|+++.+|.|.|+| . .+++.|.||+++|+|.+|+++|+++.|++++.
T Consensus 1 v~p~hY~l~l~~~~~~~~f~G~v~I--~-~~~~~i~L~~~~l~I~~v~~~g~~~~~~~~~~------------------- 58 (780)
T 1z5h_A 1 MEVEKYDLTLDFDIQKRTFNGTETI--T-ADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQ------------------- 58 (780)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEE--E-ECSSCEEEECSSCEEEEEEETTEECCCEECSS-------------------
T ss_pred CEEEEEEEEEEEECCCCEEEEEEEE--E-cCCCEEEEEccCCEEEEEEEeceeccEEEECC-------------------
Confidence 4699999999999999999999999 4 56789999999999999999998887766531
Q ss_pred chHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCc-cEEEEEEEEEecCCcceEeeeceE
Q 002253 99 SAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQN-VKLVRIDYWVEKVEVGIHFDGNAL 177 (947)
Q Consensus 99 ~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~~~i~y~~~~~~~G~~f~~~~~ 177 (947)
.|.|.++ + | .+++ .+.|+|.+... .|+++..|. ++++
T Consensus 59 --------------------~l~i~~~-~------g--~~~l--~i~y~g~~~~~~~G~y~~~y~-----------~~~~ 96 (780)
T 1z5h_A 59 --------------------TVRAPGD-S------Q--PQKI--EISFAGKVSDSLSGIYYAGRE-----------NGMI 96 (780)
T ss_dssp --------------------EEEECCC-S------S--SEEE--EEEEEEECBSSSSEEEEESST-----------TCEE
T ss_pred --------------------EEEEEeC-C------c--cEEE--EEEEEEEeCCCcccceecccc-----------ceEE
Confidence 2555331 1 1 1222 23444444332 244433221 4678
Q ss_pred ecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeeEEEEeccee
Q 002253 178 HTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITLAVAPFEV 257 (947)
Q Consensus 178 ~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~yliafaVG~F~~ 257 (947)
+||+||.+||+||||+|+|+.||+|+|+|++|++|+|+|||+++++ .++++++++|..++|||+|++||+||+|+.
T Consensus 97 ~Tq~ep~~AR~~fPc~DeP~~Katf~iti~~p~~~~~lSN~~~~~~----~~~g~~~~~f~~t~~mstYL~a~~vg~f~~ 172 (780)
T 1z5h_A 97 TTHFEATDARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKRI----EVSERKVVEFQDTPRMSTYLLYVGIGKFRY 172 (780)
T ss_dssp EEECTTTCGGGTSCBCCCTTSCBEEEEEEEECTTCEEEESSCEEEE----EESSSEEEEECCCCSBCGGGCCEEEECCEE
T ss_pred EEccccCChhheeecCCCcccccEEEEEEEECCCCEEEeCCccccc----cCCCceEEEEecCCcccceEEEEEEeccEE
Confidence 9999999999999999999999999999999999999999998764 235788999999999999999999999999
Q ss_pred eecCC-CCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeCCCCcccccccccchhhcc-cccccC
Q 002253 258 LPDHH-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLAPEMAVSSSTFGAAMGIFS-SQILYD 335 (947)
Q Consensus 258 ~~~~~-~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp~~~~~~~~~~gagl~~~~-~~lL~~ 335 (947)
++... +.++++|++|+ +.++++++.+.++++||+++||+||||+||++|++|++..++|+++ |++++. +.+|++
T Consensus 173 ~~~~~~gv~~~v~~~~~--~~~~~al~~~~~~l~~~e~~fg~~YP~~k~d~v~vpdf~~GaMEn~--glit~~e~~ll~~ 248 (780)
T 1z5h_A 173 EYEKYRDIDLILASLKD--IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEFGAGAMENW--GAITFREIYMDIA 248 (780)
T ss_dssp EEEEETTEEEEEEESSC--CCCSHHHHHHHHHHHHHHHHHSSCCSSSEEEEEEETTCTTCEECCT--TEEEEEHHHHSCC
T ss_pred EeeccCCeeEEEEEccc--hhHHHHHHHHHHHHHHHHHHhCCCCCCccCCEEEcCCCCCCccccc--CeeEeecceEeec
Confidence 87543 57899999999 6678999999999999999999999999999999997667889998 778884 568887
Q ss_pred ccccchh-hHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchH--HHHHHHhhcchhhcccCC
Q 002253 336 EKVIDQA-IDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEA--RYRRYKANCAVCKADDSG 412 (947)
Q Consensus 336 ~~~~d~~-~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~--~~~~~~~~~~~~~~~~~~ 412 (947)
+...... .....++|||+|||||||+|||+||+|+|||||||+|++++++++.+|+..+ .|... ........|...
T Consensus 249 ~~~~~~~~~~~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~-~~~~al~~D~~~ 327 (780)
T 1z5h_A 249 ENSAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVS-RTSGALRSDSLK 327 (780)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHH-THHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHHhCCchhHHHHHHHH-HHHHHHHHhhcc
Confidence 3322221 2234689999999999999999999999999999999999999999987653 11110 111111111110
Q ss_pred CcccCCCCccccCC-CCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHhc
Q 002253 413 ATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVG 491 (947)
Q Consensus 413 ~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~F~~~~e~v~ 491 (947)
...|...++. +.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ ++++||.+.+++++
T Consensus 328 ----~~~pi~~~v~~~~~~~~~fd~i~Y~KGa~vl~mL~~~lG~e~F~~~l~~yl~~~~~~~----~t~~Dl~~~l~~~s 399 (780)
T 1z5h_A 328 ----NTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGN----AEGSDLWTAIEDVS 399 (780)
T ss_dssp ----TCCCSCCCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTEE----ECHHHHHHHHHHHH
T ss_pred ----CCCCceecCCCHHHHHHhcchhhhhhHHHHHHHHHHHhCHHHHHHHHHHHHHHhccCC----CCHHHHHHHHHHHh
Confidence 1111112222 23455679999999999999999999999999999999999999985 78999999999987
Q ss_pred CCCcccHHHHHHhhhcCCCccEEEEEEEEeccCcEEEEEEEeeccCCCCCCCCcccCCCCCCCCCCCCCcceeEEEEEec
Q 002253 492 NLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHE 571 (947)
Q Consensus 492 ~~~~~dl~~f~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~tiri~e 571 (947)
+.|+++||++|++++|+|+++|+. + ++.+.++|+|+.... +....|.+|+++ .
T Consensus 400 ---g~dl~~~~~~W~~~~G~P~l~v~~--~--~~~~~l~Q~~f~~~~-----------------~~~~~w~iPi~~-~-- 452 (780)
T 1z5h_A 400 ---GKPVKRVMEYWIKNPGYPVIKLKR--N--GRKITMYQTRFLLNG-----------------EEEGRWPVPVNI-K-- 452 (780)
T ss_dssp ---CSCHHHHHHHHHHSCSCEEEEEEE--S--SSEEEEEEEECCSSC-----------------CEECCCCEEEEE-E--
T ss_pred ---CCCHHHHHHHHHhCCCCceEEEEe--c--CcEEEEEEEEecCCC-----------------CCCceEEEEEEE-c--
Confidence 468999999999999999999987 2 346778777764211 012479999998 3
Q ss_pred cCCcccccccccCCCcceEEEeeeccchhhhhhcCCCCCCCCCCCCCCCCcccccccccCCCCCceEEEecCCCceeeEe
Q 002253 572 LDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEI 651 (947)
Q Consensus 572 ~dGt~~h~~~~~~~~~~~~~~i~~~~k~~~~r~~k~k~~~~~~~~~~~~d~~~~~d~~~~~~~~~~wiriDpd~e~l~~v 651 (947)
.+|. .+ .. +. .+ . .. + ..+ .||.++++..-.++|
T Consensus 453 ~~~~-~~-----------~~-l~--~~----------~----------~~-~---------~~~-~~i~~N~~~~gyyrv 486 (780)
T 1z5h_A 453 KKDG-VE-----------RI-LL--ED----------E----------AS-I---------EAD-GLIKINADSAGFYRV 486 (780)
T ss_dssp ETTE-EE-----------EE-EE--CS----------S----------EE-E---------ECT-TEEEESGGGCSSSEE
T ss_pred CCCc-ee-----------ee-cc--Cc----------e----------EE-c---------cCC-ceEEEeCCCCEEEEE
Confidence 2332 11 01 11 00 0 00 1 012 699999999999999
Q ss_pred eccCchh-HHHHHHhhcCChHHH---HHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002253 652 HFNQPVQ-MWINQLEKDGDVVAQ---AQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 652 ~~~qp~~-m~~~QL~~drdv~aq---~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
+++...+ ....+| ..=++..| +..+-+|.+....+....-.|.+.|.+|. .|.|...|...|..+..
T Consensus 487 ~Yd~~~~~~l~~~l-~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~-~~~~w~~~~~~l~~~~~ 557 (780)
T 1z5h_A 487 LYDDATFSDVMGHY-RDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDE-DHNVITAIVGQMEYLRM 557 (780)
T ss_dssp ECCHHHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCC-CHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHh
Confidence 9985432 333344 23477766 34455555433334333444667788775 89999999998886654
No 8
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=100.00 E-value=1.8e-69 Score=651.28 Aligned_cols=443 Identities=16% Similarity=0.258 Sum_probs=344.1
Q ss_pred CCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-C-CcceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhccccC
Q 002253 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-P-DIGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWRSMV 94 (947)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~-~~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~~~~ 94 (947)
..+++.||+|+|++|+++++|+|+++|++.+ . .++.|.||+++|+|++|+|||++++|........
T Consensus 12 ~~~rv~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~L~I~~V~v~g~~~~~~~~~~~~~------------ 79 (608)
T 3u9w_A 12 SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQSY------------ 79 (608)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEEEEEEECSTTEEEEEEEESSCEEEEEEETTEECCEEECCCCGG------------
T ss_pred cCCCceEEEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEECCEEcceeccccccc------------
Confidence 3468999999999999999999999999986 3 3689999999999999999999988876532100
Q ss_pred CCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEEecCCcceEe--
Q 002253 95 SSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEKVEVGIHF-- 172 (947)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~~~~G~~f-- 172 (947)
....|.|.++.+ ++.+. ...+.|.|......+|++|
T Consensus 80 ---------------------~~~~l~I~l~~~---l~~g~------------------~~~l~I~y~~~~~~~~~~~~~ 117 (608)
T 3u9w_A 80 ---------------------KGSPMEISLPIA---LSKNQ------------------EIVIEISFETSPKSSALQWLT 117 (608)
T ss_dssp ---------------------GCEEEEEEEEEE---ECTTC------------------EEEEEEEEECCTTCTTEEEEC
T ss_pred ---------------------cCceEEEEcCCC---CCCCC------------------EEEEEEEEEEEcCCCceeeec
Confidence 011366654321 11111 1123333333322233332
Q ss_pred -------eeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcc
Q 002253 173 -------DGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSA 245 (947)
Q Consensus 173 -------~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~ 245 (947)
..++++||+||.+||+||||+|+|+.||||+++|++|++++|+|||.+.++...+.++++++++|..++|||+
T Consensus 118 ~~~~~g~~~~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p~~~~alsng~~~~~~~~~~~~~~~~~~f~~t~pmst 197 (608)
T 3u9w_A 118 PEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVPKELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 197 (608)
T ss_dssp GGGSSSSSSCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEEEETTSEEEESSEEEEEEECTTCTTEEEEEEEEEEEECG
T ss_pred ccccCCCcceEEEEcccCCCCCEEEEecCccceeEEEEEEeeCCcceeeeeeccccceeeccCCCCeEEEEEEecCCccc
Confidence 1367899999999999999999999999999999999999999999998877666678899999999999999
Q ss_pred eeeEEEEecceeeecCCCCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeC-CCCcccccccccc
Q 002253 246 KWITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAA 324 (947)
Q Consensus 246 yliafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gag 324 (947)
|++||+||+|+..+. +..+.+|+.|+..+.+.++++.+.+++++||+++| +|||+++++|++| ++..++|+++ |
T Consensus 198 YL~a~~vg~f~~~~~--~~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~~g-~Yp~~~~~~vv~~p~f~~GgMEn~--g 272 (608)
T 3u9w_A 198 YLIALVVGALESRQI--GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENP--C 272 (608)
T ss_dssp GGCCEEEESCEEEEE--ETTEEEEECHHHHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCT--T
T ss_pred EEEEEEEeeeeeEec--CCceEEEeChhhHHHHHHHHHHHHHHHHhHHhcCC-CCCchhhceeeecccccchhhhcC--c
Confidence 999999999998765 56788999999999999999999999999999998 9999999999985 4446789988 7
Q ss_pred hhhcccccccCccccchhhHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHHhhcc
Q 002253 325 MGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCA 404 (947)
Q Consensus 325 l~~~~~~lL~~~~~~d~~~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~~~~~ 404 (947)
|+++++.+|..+... ..+||||||||||||+||++||+|+|||||||+|++++++++++|.+...+........
T Consensus 273 l~~~~~~~l~~~~~~------~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~~~~~~~~~~~~~~~~~~ 346 (608)
T 3u9w_A 273 LTFVTPTLLAGDKSL------SNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGE 346 (608)
T ss_dssp EEEECGGGCCSSSTT------THHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceeeeeeeecccchh------HHHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHHHccchhhHHHHHHHHHH
Confidence 788877766554432 34799999999999999999999999999999999999999999987654322211111
Q ss_pred hhhc-cc-CCCcccCCCCccccCCCCcccccccchhhccHHHHHHHHHHHhC-hHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 002253 405 VCKA-DD-SGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTK 481 (947)
Q Consensus 405 ~~~~-~~-~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG-~e~F~~~L~~yl~~~~~~~~~~~~st~ 481 (947)
.... +. ....++... ..+.........|+.++|.||++|||||++.|| ++.|+++|+.|++++++++ ++++
T Consensus 347 ~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~~~F~~~lr~Yl~~~~~~~----~tt~ 420 (608)
T 3u9w_A 347 LQNSVKTFGETHPFTKL--VVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKS----ITTD 420 (608)
T ss_dssp HHHHHHHHCTTCGGGSS--SCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEE----ECHH
T ss_pred HHHHHhhhhccCCcccc--ccccccCChhhcccHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCC----CCHH
Confidence 1000 00 111111110 111112223457899999999999999999998 6789999999999999985 7999
Q ss_pred HHHHHHHHhcCCCcccHHHH----HHhhhcCCCccEEEEEEEEeccCcEEEEEEEe
Q 002253 482 EFRHFANKVGNLERPFLKEF----FPRWVGTCGCPVLRMGFSYNKRKNIVELAVLR 533 (947)
Q Consensus 482 ~F~~~~e~v~~~~~~dl~~f----~~~Wv~~~G~P~l~V~~~~n~k~~~vel~i~q 533 (947)
||.+++++++ +.+++.+ |++|++++|+|.++|+++++..+.++.++|++
T Consensus 421 Df~~~l~~~~---~~~~~~~~~~~~~~W~~~~G~P~v~v~~d~~~~~~~~~l~q~~ 473 (608)
T 3u9w_A 421 DWKDFLYSYF---KDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRW 473 (608)
T ss_dssp HHHHHHHHHT---GGGHHHHHTSCHHHHHHCCSSCSSCCCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHh---ccccchhhHHHHHHHhcCCCCCceeeeeccccccceeeHHhHH
Confidence 9999999887 4567777 99999999999999988776655666565544
No 9
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=100.00 E-value=1e-63 Score=600.79 Aligned_cols=428 Identities=18% Similarity=0.272 Sum_probs=324.7
Q ss_pred CCCCcEEEEEEEEEEEeccCcEEEEEEEEEEEcC-C-cceEEEeccCceeeEEEE-c--C--eeeeeeeCCCCcccchhh
Q 002253 15 ENSGAVVRHQKLCLSIDMEKHQIYGYTELEIAVP-D-IGIVGLHAENLGIESVLV-D--G--EPTEFEYYPHNHQNVENE 87 (947)
Q Consensus 15 ~~~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~~-~-~~~I~L~a~~l~I~~V~v-~--g--~~~~f~~~~~~~~~~~~~ 87 (947)
....+.|.||+|+|++|+++.+|+|+++|++.+. + ++.|.||+++|+|.+|+| | | +++.|++.+... .
T Consensus 22 ~p~~~~~~hy~l~l~~d~~~~~~~G~v~I~~~~~~~~~~~i~Ld~~~l~I~~v~v~~~~g~~~~~~~~~~~~~~-~---- 96 (605)
T 3cia_A 22 NYDQVKATHVYLDLNVDFDKKSLSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYDLAKRDD-V---- 96 (605)
T ss_dssp CTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEECCSSCCCEEEBCSSEEEEEEEEECTTCCEEEECEEEEEECS-S----
T ss_pred CCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEcCCCCccceeEEecCccc-c----
Confidence 3468999999999999999999999999999863 3 689999999999999999 8 8 777776653100 0
Q ss_pred hhccccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEEec-C
Q 002253 88 KRWRSMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-V 166 (947)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~-~ 166 (947)
....|.|.++ . +.+++ .+.|+|.+... ++ +|+.. .
T Consensus 97 ----------------------------~~~~l~i~l~-------~--~~~~l--~i~y~~~~~~~-gl----~~~~~~~ 132 (605)
T 3cia_A 97 ----------------------------LGSKLTINTP-------L--NAKKV--RVYYNSTEKAT-GL----QWLSAEQ 132 (605)
T ss_dssp ----------------------------SCEEEEECCC-------T--TCSEE--EEEEEECTTCT-TE----EEECGGG
T ss_pred ----------------------------CCCeEEEEeC-------C--ceEEE--EEEEEEecCCC-ce----EEecccc
Confidence 0113566432 0 11122 23444544321 11 12210 0
Q ss_pred CcceEeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcce
Q 002253 167 EVGIHFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAK 246 (947)
Q Consensus 167 ~~G~~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~y 246 (947)
.+|. ..++++|||||.+||+||||+|+|+.||+|+++|++|++|+|+|||....+. ..+ .+++|..++|||+|
T Consensus 133 ~~g~--~~~~~~Tq~ep~~AR~~fPc~D~P~~katf~i~i~~p~~~~alsng~~~~~~---~~~--~~~~f~~t~pmstY 205 (605)
T 3cia_A 133 TAGK--EKPFLFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPGT---ERD--GDYFFSMPQAIPPY 205 (605)
T ss_dssp SSSS--SSCEEEECCTTTTGGGTSCBCCCTTCCEEEEEEEECCTTCEEEESSEEC-------CC--SEEEEEEEEEECGG
T ss_pred cCCC--cccEEEecCcccChhhceecCCCcCceeEEEEEEEEcCCcEEEecCCcccee---cCC--CeEEEeeCCCccce
Confidence 1221 2467899999999999999999999999999999999999999999654331 122 27999999999999
Q ss_pred eeEEEEecceeeecCCCCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeC-CCCcccccccccch
Q 002253 247 WITLAVAPFEVLPDHHQSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAM 325 (947)
Q Consensus 247 liafaVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gagl 325 (947)
++||+||+|+.++. +.++++|++|+..+.++++++.+.+++++|+++|| +|||++|++|++| ++..++|+++ |+
T Consensus 206 l~a~~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~l~~~e~~fG-~YP~~k~d~v~~p~~f~~GgMEn~--gl 280 (605)
T 3cia_A 206 LIAIGVGDLEFKAM--SHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMYG-KYRWGRYDLLMLPPSFPFGGMENP--RL 280 (605)
T ss_dssp GCCEEEESCEEEES--SSSEEEEECSTTHHHHHHHSTTHHHHHHHHHHHHC-CCTTSCEEEEECCTTCSSSEECCT--TE
T ss_pred eEEEEEeeeeEecC--CCeEEEEeccChHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccEEEECCccCCCcccCC--cE
Confidence 99999999999875 45799999999999999999999999999999999 9999999999996 4446789998 56
Q ss_pred hhcccccccCccccchhhHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHH---Hhh
Q 002253 326 GIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY---KAN 402 (947)
Q Consensus 326 ~~~~~~lL~~~~~~d~~~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~---~~~ 402 (947)
++.+..+|.++.. ...+||||+|||||||+|||+||+|+|||||||+|++++++++.+|+...++... ...
T Consensus 281 tf~~~~ll~~~~~------~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l 354 (605)
T 3cia_A 281 SFITPTVVAGDKS------LVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDL 354 (605)
T ss_dssp EEECGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEecchhccCcHH------HHHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 5446667765432 2358999999999999999999999999999999999999999999875444321 111
Q ss_pred cchhhcccCCCcccCCCCccccCCCCcccccccchhhccHHHHHHHHHHHhChHHHHHHHHHHHHhhcCCCCCCCCCHHH
Q 002253 403 CAVCKADDSGATALSSSASCKDLYGTQCIGIFGKIRSCKSVAILQMLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKE 482 (947)
Q Consensus 403 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~e~F~~~L~~yl~~~~~~~~~~~~st~~ 482 (947)
...+..-.....++ ..++.+.++...|+.++|.||++|||||+..||++.|+++|+.|++++++++ +++++
T Consensus 355 ~~~l~~~~~~~~pl-----~~~~~~~~~~~~f~~i~Y~KGa~vl~mL~~~lG~e~F~~~lr~yl~~~~~~~----~t~~d 425 (605)
T 3cia_A 355 NAEILELDASDTQL-----YIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQS----LGTDN 425 (605)
T ss_dssp HHHHHHSCTTTTSS-----SCCCTTCCTTTSCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTTEE----ECHHH
T ss_pred HHHHHhhccCCCCc-----ccCCCCCChhHhhCccchhHHHHHHHHHHHHhChHHHHHHHHHHHHHhCcCC----CCHHH
Confidence 11110000111111 1122223445678999999999999999999999999999999999999885 79999
Q ss_pred HHHHHHHhcCCC-cccHHH-HHHhhhcCCCccEEEEEE
Q 002253 483 FRHFANKVGNLE-RPFLKE-FFPRWVGTCGCPVLRMGF 518 (947)
Q Consensus 483 F~~~~e~v~~~~-~~dl~~-f~~~Wv~~~G~P~l~V~~ 518 (947)
|.+.++++++.. ..+++. +|++|++++|+|.+++++
T Consensus 426 f~~~l~~~~~~~~~~~l~~~~~~~W~~~~G~P~~~~~~ 463 (605)
T 3cia_A 426 FVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQP 463 (605)
T ss_dssp HHHHHHHTTTTTSTTSSCHHHHHHHHHSSSCCSSSCCC
T ss_pred HHHHHHHHhccccccccchhhHHHHhcCCCCCceeccC
Confidence 999999987420 124555 799999999999998765
No 10
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=100.00 E-value=9.1e-64 Score=603.03 Aligned_cols=428 Identities=18% Similarity=0.265 Sum_probs=324.4
Q ss_pred CCcEEEEEEEEEEEeccCcEEEEEEEEEEEc-CC----cceEEEeccCceeeEEEEcCeeeeeeeCCCCcccchhhhhcc
Q 002253 17 SGAVVRHQKLCLSIDMEKHQIYGYTELEIAV-PD----IGIVGLHAENLGIESVLVDGEPTEFEYYPHNHQNVENEKRWR 91 (947)
Q Consensus 17 ~~~~~~hy~l~L~id~~~~~~~G~v~I~i~~-~~----~~~I~L~a~~l~I~~V~v~g~~~~f~~~~~~~~~~~~~~~~~ 91 (947)
..+.|.||+|+|++|+++++|.|.++|++.+ .+ ++.|.||+++|+|.+|+++|+++.|++.+....
T Consensus 26 ~~~~~~hY~L~l~~d~~~~~~~G~v~I~~~~~~~~~~~~~~i~Ld~~~l~I~~v~v~g~~~~~~~~~~~~~--------- 96 (632)
T 2xq0_A 26 KDFAVLHTDLNLSVSFEKSAISGSVTFQLKKLHEGKNKSDELHLDTSYLDVQEVHIDGSKADFQIEQRKEP--------- 96 (632)
T ss_dssp GGEEEEEEEEEEEEETTTTEEEEEEEEEEEECC---CCCCEEEEBCSSEEEEEEEETTEECCEEECCCBTT---------
T ss_pred CceeEEEEEEEEEEeCCCCEEEEEEEEEEEECCCCCCcCcEEEEEccCCEEEEEEECCeecceEEcccccc---------
Confidence 5799999999999999999999999999986 34 789999999999999999999888876532000
Q ss_pred ccCCCCCchHHHHHHHHHHhhcccCCCceeEeccCCCCCchhhhhhhhccccCCCCCccCCccEEEEEEEEEec-CCcce
Q 002253 92 SMVSSPSSAADAAAAVYISALERELVPNLLINCCKPFKGLTDQIEQMNLENKLDSSAEPKQNVKLVRIDYWVEK-VEVGI 170 (947)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~I~~~~p~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~y~~~~-~~~G~ 170 (947)
....|.|.++.+ + +.++ +.+.|+|.+... |+ +++.. ..+|-
T Consensus 97 ------------------------~~~~l~I~l~~~------g-~~~~--l~I~Y~g~~~~~-gl----~~~~~~~~~g~ 138 (632)
T 2xq0_A 97 ------------------------LGSRLVINNASC------N-DNFT--LNIQFRTTDKCT-AL----QWLNSKQTKGG 138 (632)
T ss_dssp ------------------------TBCCEEEECCCS------S-SEEE--EEEEEEECTTCS-SE----EEECTTTSTTS
T ss_pred ------------------------cCcEEEEEecCC------C-CEEE--EEEEEeeecCcC-cc----eeecccccCCC
Confidence 012477755322 1 1112 223344443321 11 11210 01221
Q ss_pred EeeeceEecccccCCcceEEeecCCCCCceeEEEEEEEeCCeEEEEcCceeeeeeccCCCCceEEEEecCCCCcceeeEE
Q 002253 171 HFDGNALHTDNQIRRARCWFPCIDDTTQRCCYDLEFTVSQNLIAVSAGSLLYQVLSKDDPPRKTYVYRLDVPVSAKWITL 250 (947)
Q Consensus 171 ~f~~~~~~T~~ep~~AR~wFPC~D~p~~katf~l~itvp~~~~vvsnG~l~~~~~~~~~~~~~t~~F~~t~p~s~yliaf 250 (947)
.++++||+||.+||+||||+|+|+.||||+++|++| ++|++||.++++.. . +.++++|+.++|||+|++||
T Consensus 139 ---~~~~~Tq~ep~~AR~~fPc~D~P~~Katf~i~I~~p--~~vv~sg~~~~~~~--~--~~~~~~F~~t~pmstYLva~ 209 (632)
T 2xq0_A 139 ---KPYVFSQLEAIHARSLFPCFDTPSVKSTFTASIESP--LPVVFSGIRIEDTS--K--DTNIYRFEQKVPIPAYLIGI 209 (632)
T ss_dssp ---SCEEEECCTTTTGGGTSCBCCSTTCCEEEEEEEECS--SCEEESSEECCCC--------CEEEEEEEEEECGGGCCE
T ss_pred ---ceEEEeccccCCcceeeeecCCcccceEEEEEEEEc--hHHhccCcccccee--c--CCCeEEEEeCCccchhheee
Confidence 367889999999999999999999999999999999 99999997765432 1 22489999999999999999
Q ss_pred EEecceeeecCCCCeEEEEEcCCchhHHHHHHH-HHHHHHHHHHHHhCCCCCCCCccEEEeC-CCCcccccccccchhhc
Q 002253 251 AVAPFEVLPDHHQSLMSHICLPANVSKIHNTVE-FFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIF 328 (947)
Q Consensus 251 aVG~F~~~~~~~~~~v~~~~~p~~~~~~~~~~~-~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gagl~~~ 328 (947)
+||+|+..+. +..+++|++|+..+.+++++. .+.+++++||++|| +|||++|++|++| ++..++|+++ ||++.
T Consensus 210 ~vg~f~~~~~--g~~~~v~~~p~~~~~~~~~~~~~~~~~l~~~e~~fG-pYP~~k~d~v~~pp~f~~GgMEn~--glt~~ 284 (632)
T 2xq0_A 210 ASGDLSSAPI--GPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKIIF-EYEWGTYDILVNVDSYPYGGMESP--NMTFA 284 (632)
T ss_dssp EESSCEEEEE--ETTEEEEECHHHHHHHHHHHTTTHHHHHHHHHHHSC-CCCSSCCCEEECCTTCCSSEECCT--TCEEE
T ss_pred eEecceeecc--CCeeEEEEccchHHHHHHHHHHHHHHHHHHHHHhcc-cCCcccccEEEECCCCCCCccccc--eEEEe
Confidence 9999999875 457899999998888889998 99999999999999 9999999999996 5556789998 56555
Q ss_pred ccccccCccccchhhHHHHHHHHHHHHhhhccccCCCCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHHHhhcchhh-
Q 002253 329 SSQILYDEKVIDQAIDTSIKLSFALARQWFGVYITPELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRYKANCAVCK- 407 (947)
Q Consensus 329 ~~~lL~~~~~~d~~~~~~~~laHELAHQWFG~lVt~~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~~~~~~~~~- 407 (947)
++.+|.++.. ...+||||+|||||||+||++||+|+|||||||+|++++++++.+|++.+++.....+.....
T Consensus 285 ~~~ll~~~~~------~~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l~~~ 358 (632)
T 2xq0_A 285 TPTLLAHDRS------NIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNS 358 (632)
T ss_dssp CGGGCCSSSC------STHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred eceeccCchh------HHHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 6777765432 245899999999999999999999999999999999999999999987654432211110100
Q ss_pred ccc-CCCcccCCCCccccCC-CCcccccccchhhccHHHHHHHHHHHhCh-HHHHHHHHHHHHhhcCCCCCCCCCHHHHH
Q 002253 408 ADD-SGATALSSSASCKDLY-GTQCIGIFGKIRSCKSVAILQMLEKQMGS-NFFRKILQNIISRAQGASPVRTLSTKEFR 484 (947)
Q Consensus 408 ~~~-~~~~~l~~~~~~~~l~-~~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~-e~F~~~L~~yl~~~~~~~~~~~~st~~F~ 484 (947)
.+. ....++.. ...++. +.++...|+.++|.||++|||||+..||+ +.|+++|+.|++++++++ +++++|.
T Consensus 359 l~~~~~~~pl~~--l~~~~~~~~~~~~~f~~i~Y~KGa~vL~mL~~~lG~~e~F~~~Lr~Yl~~~~~~~----~tt~Df~ 432 (632)
T 2xq0_A 359 IDSMKDPERFST--LVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKS----LDTFQFL 432 (632)
T ss_dssp HHTCSSHHHHTS--SSCCCCSSSCGGGGCSSHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTEE----ECHHHHH
T ss_pred HHhcccCCCCcc--cccCCCCCCChHHhccchhhHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhCcCC----CCHHHHH
Confidence 010 01111110 011221 23445678999999999999999999999 999999999999999985 7999999
Q ss_pred HHHHHhcCCCcccHHH-HHHhhhcCCCccEEEEEE
Q 002253 485 HFANKVGNLERPFLKE-FFPRWVGTCGCPVLRMGF 518 (947)
Q Consensus 485 ~~~e~v~~~~~~dl~~-f~~~Wv~~~G~P~l~V~~ 518 (947)
+.++++++..+.+++. +|++|++++|+|. .+++
T Consensus 433 ~~l~~~~~~~~~~l~~~~~~~W~~~~G~P~-~~~~ 466 (632)
T 2xq0_A 433 DTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHF 466 (632)
T ss_dssp HHHHHHCGGGHHHHHTSCHHHHHHCCSCCC-CCCC
T ss_pred HHHHHHhhhccccccHHHHHHHhcCCCCCC-CcCC
Confidence 9999887421246777 7999999999999 6543
No 11
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.89 E-value=1.4e-22 Score=241.08 Aligned_cols=315 Identities=9% Similarity=0.055 Sum_probs=191.9
Q ss_pred cceEEeecCCCCCceeEEEEEEEeCC---eEEEEcCceeeeeeccCCCCceEEEEec-CCCCcceeeEEEEecceeeecC
Q 002253 186 ARCWFPCIDDTTQRCCYDLEFTVSQN---LIAVSAGSLLYQVLSKDDPPRKTYVYRL-DVPVSAKWITLAVAPFEVLPDH 261 (947)
Q Consensus 186 AR~wFPC~D~p~~katf~l~itvp~~---~~vvsnG~l~~~~~~~~~~~~~t~~F~~-t~p~s~yliafaVG~F~~~~~~ 261 (947)
..+.|.+++.- ...+.+++|+.|++ |.+.+..+..+. ...+..+|.-.. ..-+-+ -+.+|+|+..+..
T Consensus 108 ~~~~fly~~g~-~~~p~~~~i~~P~~~~~W~vaT~L~~~~~----~~~~~~~f~a~~yd~LvDs---Pv~~G~~~~~~~~ 179 (597)
T 4fgm_A 108 NTSLCLAVEGQ-TDLPCELHLHAPPEAPLWKVATGMPRKSG----QPHSWGCFRADNYDALIDY---PFLIGDLTIEEFI 179 (597)
T ss_dssp HHHHCCEETTC-TTSCEEEEECCCTTCTTCEEEESSCBCSS----CTTSSEEEEESSHHHHTTC---CEEEESCEEEEEE
T ss_pred hhhhheeccCc-cCCcEEEEEECCCCCCcceEEecCCccCC----CCCcceEEEcCCHHHHhcc---hhcccCcEEEEec
Confidence 44566666653 67789999999999 997776654321 111233332211 001111 1368898876654
Q ss_pred C-CCeEEEEEcCCchhHHHHHHHHHHHHHHHHHHHhCCCCCCCCccEEEeC-CCCcccccccccchhhcccccccCcc--
Q 002253 262 H-QSLMSHICLPANVSKIHNTVEFFHNAFSHYETYLDAKFPFGSYKQVFLA-PEMAVSSSTFGAAMGIFSSQILYDEK-- 337 (947)
Q Consensus 262 ~-~~~v~~~~~p~~~~~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V~vp-~~~~~~~~~~gagl~~~~~~lL~~~~-- 337 (947)
. +.++++...+......+..+..+.+++++++++|| +|||++|.+++.+ ++..++|++.++.+++++...|....
T Consensus 180 ~~g~p~~l~v~~~~~~d~~~~~~~~~~~~~~~~~~fG-~yP~~~Y~fl~~~~~~~~GgmEh~~st~l~~~~~~l~~~~~~ 258 (597)
T 4fgm_A 180 AHGIKHSLVLSGRHYADTSRITADLAKICETQISLFE-EAPFQSYTFLTMVVGNGFGGLEHRNSTALLCSRKDLISAHQY 258 (597)
T ss_dssp ETTEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHT-SCSCSEEEEEEEEESSCCEEEECSSEEEEEEEGGGSCCTTCC
T ss_pred cCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC-CCCCCceEEEEEccCCCCcccccCCceEEEeCchhccccccc
Confidence 3 45565544433333457888899999999999999 9999999998642 22345566554444444332221110
Q ss_pred ccchh-hHHHHHHHHHHHHhhhccccCC-----------CCCChhHHHHHHHHHHHHHHHHHHhCCchHHHHHH--Hhhc
Q 002253 338 VIDQA-IDTSIKLSFALARQWFGVYITP-----------ELPNDEWLLDGLAGFLTDSFIKKFLGNNEARYRRY--KANC 403 (947)
Q Consensus 338 ~~d~~-~~~~~~laHELAHQWFG~lVt~-----------~~w~d~WL~EGfA~Y~~~~~~~~~~G~~e~~~~~~--~~~~ 403 (947)
..+.. .....+++||++|||||+.|+| ++|+++||+||||+|++.+++.+.-......|... ....
T Consensus 259 ~~~~~~~~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r~G~~~~~~~~~~l~~~i~ 338 (597)
T 4fgm_A 259 EMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKLLGDTLS 338 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred cchhhhhchhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 01111 2234589999999999988875 45689999999999999999876533333222211 1111
Q ss_pred chhhcccCCCcccC-CC-CccccCCC-CcccccccchhhccHHHHHHHHHHHhCh-----HHHHHHHHHHHHhhcCCCCC
Q 002253 404 AVCKADDSGATALS-SS-ASCKDLYG-TQCIGIFGKIRSCKSVAILQMLEKQMGS-----NFFRKILQNIISRAQGASPV 475 (947)
Q Consensus 404 ~~~~~~~~~~~~l~-~~-~~~~~l~~-~~~~~~f~~i~Y~Kg~lVL~mLe~~lG~-----e~F~~~L~~yl~~~~~~~~~ 475 (947)
.+.........++. ++ ......+. .+-..-.....|.||++|++||+..|++ ++|+++|+.|+.++....
T Consensus 339 ~~~~~~gr~~~sl~~ss~~aw~~~yr~~~n~~n~~~s~Y~KGalv~~~LD~~lR~~s~g~~sldd~mr~l~~~~~~~~-- 416 (597)
T 4fgm_A 339 RVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTS-- 416 (597)
T ss_dssp HHHHSGGGGTCCHHHHHHTCCCCCTTCCTTHHHHCCCTTHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHTTTT--
T ss_pred HhhcCCCccccChHHcCchhhhccccCCcccCCcccccchHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhCcCC--
Confidence 11100000000110 00 00000110 0000001123599999999999888855 589999999999886421
Q ss_pred CCCCHHHHHHHHHHhcCCCcccHHHHHHhhhcCCCccEE
Q 002253 476 RTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVL 514 (947)
Q Consensus 476 ~~~st~~F~~~~e~v~~~~~~dl~~f~~~Wv~~~G~P~l 514 (947)
..+++++|.+++++++ |.++.+||++|+++++.|.+
T Consensus 417 ~~~t~~d~~~~~e~~s---G~dl~~ff~~~l~~t~~~p~ 452 (597)
T 4fgm_A 417 IGTADDTVINWLNQYP---GIDISDFLKDALYNKESLSL 452 (597)
T ss_dssp CCBCTTHHHHHHHTST---TCCCHHHHHHHHHSCSCCCC
T ss_pred CCCCHHHHHHHHHHhc---CcCHHHHHHHHHhCCCCcch
Confidence 1478999999999987 56899999999999998654
No 12
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=96.96 E-value=0.04 Score=62.68 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=25.2
Q ss_pred ceEEEecCCCceeeEeeccCc-hhHHHHHHhhc
Q 002253 636 LSWIRADPEMEYLAEIHFNQP-VQMWINQLEKD 667 (947)
Q Consensus 636 ~~wiriDpd~e~l~~v~~~qp-~~m~~~QL~~d 667 (947)
.+||.++++..-..+|+++.. +.....||+.+
T Consensus 67 ~~wi~~N~~~~GyYRVnYd~~~w~~L~~~L~~~ 99 (419)
T 3rjo_A 67 VEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGT 99 (419)
T ss_dssp CSCEEEEESSSSCCEEECHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCccceEEEEeCHHHHHHHHHHHhhC
Confidence 369999999999999999865 45556677654
No 13
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.81 E-value=0.014 Score=59.08 Aligned_cols=183 Identities=25% Similarity=0.224 Sum_probs=121.3
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 002253 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (947)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (947)
...++..| .|+|...|..|+..|...... .....|.+.|.|+ -..||..|+.+|+++..++ .+..|++.++
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~~--~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~ 91 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGDE--RAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 91 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--CHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 34556666 489999999999999986542 4578899999885 6889999999999988653 3677776653
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 002253 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (947)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (947)
. + +..|+.+...+|+.+.+ +++...|+.+|+. .|...+...+.+|+.+
T Consensus 92 ~----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d--------~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 92 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALKD--------EDWFVRIAAAFALGEI 139 (211)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--------SSHHHHHHHHHHHHHH
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHhC--------CCHHHHHHHHHHHHHc
Confidence 2 1 23588999999998854 3567888888851 3567888999999976
Q ss_pred ccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHH
Q 002253 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (947)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~ 896 (947)
.-. .++..+.++++ +...-|-.+++++|.+++ ..--.+.+..++ +. ....||.+|.+
T Consensus 140 ~~~--------~~~~~L~~~l~------d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l----~d-~~~~vr~~A~~ 196 (211)
T 3ltm_A 140 GDE--------RAVEPLIKALK------DEDGWVRQSAADALGEIG----GERVRAAMEKLA----ET-GTGFARKVAVN 196 (211)
T ss_dssp CCG--------GGHHHHHHHTT------CSSHHHHHHHHHHHHHHC----SHHHHHHHHHHH----HH-CCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC----chhHHHHHHHHH----hC-CCHHHHHHHHH
Confidence 431 12333444442 223456677888887752 101112232222 22 23579999999
Q ss_pred Hhhcccc
Q 002253 897 ALLDLEF 903 (947)
Q Consensus 897 ~l~~~~~ 903 (947)
+|-.++.
T Consensus 197 aL~~~~~ 203 (211)
T 3ltm_A 197 YLETHKS 203 (211)
T ss_dssp HHHC---
T ss_pred HHHhcCC
Confidence 9998764
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.23 E-value=0.17 Score=53.54 Aligned_cols=214 Identities=14% Similarity=0.047 Sum_probs=124.5
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 002253 658 QMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (947)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (947)
..++..| .|+|...|..|+.+|.... +..+...|.+.+.|+ -..||..|+.+|+++...... ...++..+.+
T Consensus 26 ~~L~~~L-~~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~~~~~---~~~l~~~L~~ 97 (280)
T 1oyz_A 26 DELFRLL-DDHNSLKRISSARVLQLRG--GQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKICKKC---EDNVFNILNN 97 (280)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHC--CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCCCTTT---HHHHHHHHHH
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHccC--CchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcccccc---chHHHHHHHH
Confidence 4566666 5789999999999999865 335678899999886 468999999999998753221 3333333321
Q ss_pred cC-CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 002253 738 RR-FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (947)
Q Consensus 738 ~~-~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (947)
.. -++ +..|+.+...||+.+...+....+++...|+.+|+. .|..-+.+.+.+|+.+
T Consensus 98 ~~~~d~--------------~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 98 MALNDK--------------SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD--------KSTNVRRATAFAISVI 155 (280)
T ss_dssp HHHHCS--------------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHTC
T ss_pred HHhcCC--------------CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC--------CCHHHHHHHHHHHHhc
Confidence 10 011 134888889999988655444566788888888752 3456788888999876
Q ss_pred ccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHH
Q 002253 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (947)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~ 896 (947)
.-.. ++..+...++ | -..-|-.+++.+|.+++ .-..+.+..++....+ .-..||.+|.+
T Consensus 156 ~~~~--------~~~~L~~~l~-d-----~~~~vr~~a~~aL~~~~-----~~~~~~~~~L~~~l~d--~~~~vR~~A~~ 214 (280)
T 1oyz_A 156 NDKA--------TIPLLINLLK-D-----PNGDVRNWAAFAININK-----YDNSDIRDCFVEMLQD--KNEEVRIEAII 214 (280)
T ss_dssp ---C--------CHHHHHHHHT-C-----SSHHHHHHHHHHHHHHT-----CCCHHHHHHHHHHTTC--SCHHHHHHHHH
T ss_pred CCHH--------HHHHHHHHHc-C-----CCHHHHHHHHHHHHhhc-----cCcHHHHHHHHHHhcC--CCHHHHHHHHH
Confidence 4311 2222233332 1 12235555666665542 1111111111111122 23578888888
Q ss_pred HhhcccccccChhhHHHHHHHHhccCCCcccc
Q 002253 897 ALLDLEFHCNGIDSALSLFIKSVEEEPSLRGE 928 (947)
Q Consensus 897 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 928 (947)
+|-.++ ...++..++..++. |.+|..
T Consensus 215 aL~~~~-----~~~~~~~L~~~l~d-~~vr~~ 240 (280)
T 1oyz_A 215 GLSYRK-----DKRVLSVLCDELKK-NTVYDD 240 (280)
T ss_dssp HHHHTT-----CGGGHHHHHHHHTS-SSCCHH
T ss_pred HHHHhC-----CHhhHHHHHHHhcC-ccHHHH
Confidence 877765 13345555555543 445543
No 15
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.17 E-value=0.051 Score=54.42 Aligned_cols=183 Identities=24% Similarity=0.183 Sum_probs=120.9
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHH
Q 002253 657 VQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYK 736 (947)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~ 736 (947)
.....-++-.|+|..-|..|+.+|...... .....|.+.|.|+ -..||..|+.+|+++..++ .+..|+++..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~ 86 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDE--RAVEPLIKALKDE--DAWVRRAAADALGQIGDER----AVEPLIKALK 86 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTT
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHcCC--CHHHHHHHHHHHHhhCCHH----HHHHHHHHHc
Confidence 344444555789999999999999986542 4578899999876 5789999999999987653 4677776543
Q ss_pred hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcc
Q 002253 737 SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGEL 816 (947)
Q Consensus 737 ~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~ 816 (947)
. + +..|+.+...+|+.+.+ +++...|+.+|+ | .|...+...+.+|+.+
T Consensus 87 d----~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 87 D----E--------------DGWVRQSAAVALGQIGD------ERAVEPLIKALK--D------EDWFVRIAAAFALGEI 134 (201)
T ss_dssp C----S--------------SHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHH
T ss_pred C----C--------------CHHHHHHHHHHHHHhCc------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHh
Confidence 2 1 13588999999998864 356777888884 1 2566888999999976
Q ss_pred ccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHH
Q 002253 817 EFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASR 896 (947)
Q Consensus 817 ~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~ 896 (947)
... .++..+.++++ | -..-|-.+++.+|.+++ ..--.+.+..++ +. .-..||.+|.+
T Consensus 135 ~~~--------~~~~~L~~~l~-d-----~~~~vr~~A~~aL~~~~----~~~~~~~L~~~l----~d-~~~~vr~~A~~ 191 (201)
T 3ltj_A 135 GDE--------RAVEPLIKALK-D-----EDGWVRQSAADALGEIG----GERVRAAMEKLA----ET-GTGFARKVAVN 191 (201)
T ss_dssp TCG--------GGHHHHHHHTT-C-----SSHHHHHHHHHHHHHHC----SHHHHHHHHHHH----HH-CCHHHHHHHHH
T ss_pred CCH--------HHHHHHHHHHc-C-----CCHHHHHHHHHHHHHhC----chhHHHHHHHHH----hC-CCHHHHHHHHH
Confidence 431 12344444443 2 23346677778877752 111112232322 21 23679999999
Q ss_pred Hhhccc
Q 002253 897 ALLDLE 902 (947)
Q Consensus 897 ~l~~~~ 902 (947)
+|-.+.
T Consensus 192 aL~~l~ 197 (201)
T 3ltj_A 192 YLETHK 197 (201)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 987654
No 16
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.58 E-value=0.23 Score=52.37 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=62.5
Q ss_pred HhhcCChHHHHHHHHHHHcCC----CCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcC
Q 002253 664 LEKDGDVVAQAQAIAALEALP----HLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRR 739 (947)
Q Consensus 664 L~~drdv~aq~eAi~~l~~~~----~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~ 739 (947)
+..|.|...|..|+.+|.... .....+...|.+.+.|+ -..||..|+.+|+++..+. .++.|++..+.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~~----~~~~L~~~l~d-- 170 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDKA----TIPLLINLLKD-- 170 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---C----CHHHHHHHHTC--
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCHH----HHHHHHHHHcC--
Confidence 345666666666666666531 01223455566666554 4567777777777665432 35555555432
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccc
Q 002253 740 FDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELE 817 (947)
Q Consensus 740 ~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~ 817 (947)
+ +..|+.+...||+.+. ...+++...|+.+|+ | .|..-+...+.+|+.+.
T Consensus 171 --~--------------~~~vr~~a~~aL~~~~----~~~~~~~~~L~~~l~--d------~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 171 --P--------------NGDVRNWAAFAININK----YDNSDIRDCFVEMLQ--D------KNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp --S--------------SHHHHHHHHHHHHHHT----CCCHHHHHHHHHHTT--C------SCHHHHHHHHHHHHHTT
T ss_pred --C--------------CHHHHHHHHHHHHhhc----cCcHHHHHHHHHHhc--C------CCHHHHHHHHHHHHHhC
Confidence 0 1236666666666652 224556666666664 1 23445666666666553
No 17
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.09 E-value=0.025 Score=52.87 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=83.5
Q ss_pred cCchhHHHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHH
Q 002253 654 NQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 733 (947)
Q Consensus 654 ~qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~ 733 (947)
.++......++.+|.|...|..|+.+|.+.... . ...|.+.|.|+ -..||..|+.+|+++..+. .+..|++
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-~~~L~~~L~d~--~~~vR~~A~~aL~~~~~~~----a~~~L~~ 80 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE--A-FEPLLESLSNE--DWRIRGAAAWIIGNFQDER----AVEPLIK 80 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST--T-HHHHHHGGGCS--CHHHHHHHHHHHGGGCSHH----HHHHHHH
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-HHHHHHHHcCC--CHHHHHHHHHHHHhcCCHH----HHHHHHH
Confidence 344445555566788888899999999876543 2 47888888875 5899999999999988643 3777777
Q ss_pred HHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHh
Q 002253 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813 (947)
Q Consensus 734 ~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al 813 (947)
..+. ++ ..|+.+...||+.+. .+++...|+.+|+ | +|..-+...+.||
T Consensus 81 ~L~d----~~--------------~~VR~~A~~aL~~~~------~~~a~~~L~~~l~--d------~~~~vr~~A~~aL 128 (131)
T 1te4_A 81 LLED----DS--------------GFVRSGAARSLEQIG------GERVRAAMEKLAE--T------GTGFARKVAVNYL 128 (131)
T ss_dssp HHHH----CC--------------THHHHHHHHHHHHHC------SHHHHHHHHHHTT--S------CCTHHHHHHHHHG
T ss_pred HHcC----CC--------------HHHHHHHHHHHHHhC------cHHHHHHHHHHHh--C------CCHHHHHHHHHHH
Confidence 7763 11 158899999999885 3578888999985 2 2456788888888
Q ss_pred hc
Q 002253 814 GE 815 (947)
Q Consensus 814 ~~ 815 (947)
+.
T Consensus 129 ~~ 130 (131)
T 1te4_A 129 ET 130 (131)
T ss_dssp GG
T ss_pred Hh
Confidence 75
No 18
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.85 E-value=0.24 Score=49.36 Aligned_cols=147 Identities=25% Similarity=0.267 Sum_probs=102.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 002253 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (947)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (947)
+.++-.|+|...|..|+.+|...... .+...|.+.|.|+ -..||..|+.+|+++..++ ....|+++...
T Consensus 50 L~~~l~~~~~~vr~~a~~~L~~~~~~--~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~d--- 118 (201)
T 3ltj_A 50 LIKALKDEDAWVRRAAADALGQIGDE--RAVEPLIKALKDE--DGWVRQSAAVALGQIGDER----AVEPLIKALKD--- 118 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGG----GHHHHHHHTTC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhCCH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHcC---
Confidence 33444789999999999999986543 4678899999885 6789999999999988653 36667665532
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccccc
Q 002253 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQ 820 (947)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~ 820 (947)
+ +..|+.+...+|+.+.+ +++...|+.+|+ | .|..-+...+.||+.+..
T Consensus 119 -~--------------~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~--d------~~~~vr~~A~~aL~~~~~-- 167 (201)
T 3ltj_A 119 -E--------------DWFVRIAAAFALGEIGD------ERAVEPLIKALK--D------EDGWVRQSAADALGEIGG-- 167 (201)
T ss_dssp -S--------------SHHHHHHHHHHHHHHTC------GGGHHHHHHHTT--C------SSHHHHHHHHHHHHHHCS--
T ss_pred -C--------------CHHHHHHHHHHHHHhCC------HHHHHHHHHHHc--C------CCHHHHHHHHHHHHHhCc--
Confidence 1 13588999999999864 356778888886 2 256789999999997732
Q ss_pred ccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHH
Q 002253 821 QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQI 861 (947)
Q Consensus 821 ~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l 861 (947)
..++..+..+++= -.-.|-.+++++|.++
T Consensus 168 ------~~~~~~L~~~l~d------~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 ------ERVRAAMEKLAET------GTGFARKVAVNYLETH 196 (201)
T ss_dssp ------HHHHHHHHHHHHH------CCHHHHHHHHHHHHHC
T ss_pred ------hhHHHHHHHHHhC------CCHHHHHHHHHHHHHH
Confidence 1233344444421 1234666777777664
No 19
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.58 E-value=0.46 Score=47.62 Aligned_cols=51 Identities=31% Similarity=0.244 Sum_probs=26.7
Q ss_pred hcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002253 666 KDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
.|.|...|..|+.+|...... .+...|.+.|.|+ -..||..|+.+|+++..
T Consensus 60 ~~~~~~vr~~a~~aL~~~~~~--~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 60 KDEDAWVRRAAADALGQIGDE--RAVEPLIKALKDE--DGWVRQSAAVALGQIGD 110 (211)
T ss_dssp TCSCHHHHHHHHHHHHHHCCG--GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHhhCCH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 455555566666666554321 2344555555553 24566666666665544
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.92 E-value=1.3 Score=52.41 Aligned_cols=231 Identities=14% Similarity=0.149 Sum_probs=124.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHcC----CCCch--hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc--c-----c
Q 002253 661 INQLEKDGDVVAQAQAIAALEAL----PHLSF--NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW--A-----G 727 (947)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~----~~~s~--~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~--~-----g 727 (947)
+.++..|++..-|..|+.+|.+. |..-. .....|.+.|.|+ -.+||..|+.+|..+....... . .
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 44667899999999999888753 32111 2456788888876 4799999999999988654321 1 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHH
Q 002253 728 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLA 807 (947)
Q Consensus 728 ~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a 807 (947)
+.+|++...+ | | =++|..|.++++.+... .+.++.++|-.++..-.+ +|.--+-
T Consensus 204 ~~~Ll~~l~~--~---------~-------~~~q~~il~~l~~l~~~---~~~~~~~~l~~l~~~l~~-----~~~~V~~ 257 (591)
T 2vgl_B 204 INKLLTALNE--C---------T-------EWGQIFILDCLSNYNPK---DDREAQSICERVTPRLSH-----ANSAVVL 257 (591)
T ss_dssp HHHHHHHHHH--C---------C-------HHHHHHHHHHHHTSCCC---SHHHHHHHHHHHTTCSCS-----STTHHHH
T ss_pred HHHHHHcCCC--C---------C-------chHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHcC-----CChHHHH
Confidence 4555555543 1 1 14677888888777532 344444433333322112 2235666
Q ss_pred HHHHHhhcccccc-ccHHHHHHHHHHHHH-HHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCC
Q 002253 808 ALVQSVGELEFGQ-QSILFLSSLLKRIDR-LLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFN 885 (947)
Q Consensus 808 ~li~al~~~~~~~-~~~~~~~~~~~ei~r-~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 885 (947)
+.+++++.+.-.- .+...++.++..+-. +..+ .-+-. -|-..+|++|.++....-..+.. .+..++..+ +
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L---~~~d~-~vr~~aL~~l~~i~~~~p~~~~~-~~~~~~~~~---~ 329 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL---LSGEP-EVQYVALRNINLIVQKRPEILKQ-EIKVFFVKY---N 329 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH---TTSCH-HHHHHHHHHHHHHHHHCCSTTTT-CTTTTSCCT---T
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH---hcCCc-cHHHHHHHHHHHHHHhChHHHHH-HHHhheecc---C
Confidence 7777777653210 111112222222221 1111 11333 34556677777775432222111 111122112 2
Q ss_pred chHHHHHHHHHHhhcccccccChhhHHHHHHHHhcc-CCCcccc
Q 002253 886 TIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEE-EPSLRGE 928 (947)
Q Consensus 886 ~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~r~~ 928 (947)
....||..|++.|..++- .++....+.-++..+.. |+.+|..
T Consensus 330 d~~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~~ 372 (591)
T 2vgl_B 330 DPIYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVDVDFVRK 372 (591)
T ss_dssp SCHHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHHH
Confidence 237899999999988763 44444555555555533 5555544
No 21
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=89.81 E-value=0.51 Score=43.67 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=62.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 002253 661 INQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (947)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (947)
+.++..|+|...|..|+.+|..... ..+...|.+.|.|+ -+.||.+|+.+|+++..++ .++.|++..+.
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~~--~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~~----a~~~L~~~l~d--- 115 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQD--ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGER----VRAAMEKLAET--- 115 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGCS--HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSHH----HHHHHHHHTTS---
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcHH----HHHHHHHHHhC---
Confidence 3455568999999999999998753 34678899999875 6799999999999987543 35666655431
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhc
Q 002253 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMV 771 (947)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~ 771 (947)
++ ..|+.+...||+.|
T Consensus 116 -~~--------------~~vr~~A~~aL~~i 131 (131)
T 1te4_A 116 -GT--------------GFARKVAVNYLETH 131 (131)
T ss_dssp -CC--------------THHHHHHHHHGGGC
T ss_pred -CC--------------HHHHHHHHHHHHhC
Confidence 11 24778777777654
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=88.93 E-value=3 Score=42.32 Aligned_cols=200 Identities=25% Similarity=0.251 Sum_probs=117.7
Q ss_pred HhhcCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------cccc
Q 002253 664 LEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-------DWAG 727 (947)
Q Consensus 664 L~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-------~~~g 727 (947)
+-++.|...|.+|+..|......+. .++..|.+.|.++. -.||..|+.+|+..+.... ...|
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 87 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPDEAIKAIVDAGG 87 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 3356678889999988876532221 24567888888764 8999999999999886421 1135
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH-----HHHHHHHHHhhhcCCCCCCCch
Q 002253 728 LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYNDNNGNPYSD 802 (947)
Q Consensus 728 ~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~-----~v~~fll~ll~~NdNs~N~ysD 802 (947)
++.|+++.+. + +--++.....+|+.+-..+...-. .+...|+++|+. +|
T Consensus 88 i~~l~~ll~~----~--------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--------~~ 141 (252)
T 4hxt_A 88 VEVLVKLLTS----T--------------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--------TD 141 (252)
T ss_dssp HHHHHHHTTC----S--------------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--------SC
T ss_pred HHHHHHHHcC----C--------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--------CC
Confidence 6777666542 1 124677777777776432111111 356778888873 23
Q ss_pred HHHHHHHHHHhhccccccccH--HHH-HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHH---------hcCCCc
Q 002253 803 VFWLAALVQSVGELEFGQQSI--LFL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LSGFIS 870 (947)
Q Consensus 803 ~~y~a~li~al~~~~~~~~~~--~~~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~---------~~~~~~ 870 (947)
.-.+...+.+|+++....+.. .+. ..++..+-.++. +-..-+...|+.+|.+++.. -.|.++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 215 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT------STDSEVQKEAARALANIASGPTSAIKAIVDAGGVE 215 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT------CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 557888888998876532211 111 125566666655 23345666777777776420 011111
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHhhccccc
Q 002253 871 LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFH 904 (947)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~ 904 (947)
.+..++ ..+ -..+|..|..+|-.+...
T Consensus 216 --~L~~ll----~~~-~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 216 --VLQKLL----TST-DSEVQKEAQRALENIKSG 242 (252)
T ss_dssp --HHHHGG----GCS-CHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHH----CCC-cHHHHHHHHHHHHHHHcC
Confidence 122222 222 247888888888777543
No 23
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.22 E-value=8.5 Score=45.59 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=127.9
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHcC----CCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc----cccc-H
Q 002253 658 QMWINQLEKDGDVVAQAQAIAALEAL----PHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET----DWAG-L 728 (947)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~----~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~----~~~g-~ 728 (947)
..-+.++..|++..-|-.|+.++.+. |..-......|.+.|.|+ -.+|+..|+.+|..+..... .+.. .
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v 221 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEK--NHGVLHTSVVLLTEMCERSPDMLAHFRKLV 221 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSHHHHHHHHHTTH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 44556667788988888888887643 321112344556667664 46899999999998775432 1222 2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH---HHHHHHHHHhhhcCCCCCCCchHHH
Q 002253 729 LHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR---EAVEFVLQLLKYNDNNGNPYSDVFW 805 (947)
Q Consensus 729 ~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~---~v~~fll~ll~~NdNs~N~ysD~~y 805 (947)
+.|++..+.. +. ++.+..-++....+=++|..+..+++.+-.. .|. .+.++|..+++..+.+.| ++.-.
T Consensus 222 ~~l~~~L~~~-~~--~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~~~~~~~~~~~L~~l~~~~~~~~~--~~~aV 293 (618)
T 1w63_A 222 PQLVRILKNL-IM--SGYSPEHDVSGISDPFLQVRILRLLRILGRN---DDDSSEAMNDILAQVATNTETSKN--VGNAI 293 (618)
T ss_dssp HHHHHHHHHH-HH--SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---CHHHHHTTHHHHHHHHHTSCCSST--HHHHH
T ss_pred HHHHHHHHHH-Hc--CCCCccccccCCCCChHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHhccccccc--hHHHH
Confidence 3444444431 00 0111111222222345777777888776432 233 345577777775555554 34456
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCc--hhhhhhhhcccCC
Q 002253 806 LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS--LDQVVKLIKPFRD 883 (947)
Q Consensus 806 ~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~--~~~~~~~~~~~~~ 883 (947)
+-+.++++..+... ......++.-+-+++. -+. .-|--.+|.+|.+++...-..+. .+.++.. ..+
T Consensus 294 ~~ea~~~i~~l~~~---~~l~~~a~~~L~~~L~-----~~d-~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~---l~d 361 (618)
T 1w63_A 294 LYETVLTIMDIKSE---SGLRVLAINILGRFLL-----NND-KNIRYVALTSLLKTVQTDHNAVQRHRSTIVDC---LKD 361 (618)
T ss_dssp HHHHHHHHHHSCCC---HHHHHHHHHHHHHHHT-----CSS-TTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHG---GGS
T ss_pred HHHHHHHHHhcCCC---HHHHHHHHHHHHHHHh-----CCC-CchHHHHHHHHHHHHhhCHHHHHHHHHHHHHH---ccC
Confidence 66667777654321 1222334444454432 223 34444566777776532111110 1112211 112
Q ss_pred CCchHHHHHHHHHHhhcccccccChhhHHHHHHHHh-ccCCCcccc
Q 002253 884 FNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSV-EEEPSLRGE 928 (947)
Q Consensus 884 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~ 928 (947)
....||..|+++|..+.-. +.....+.-++..+ +.|+.+|..
T Consensus 362 --~d~~Ir~~alelL~~l~~~-~nv~~iv~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 362 --LDVSIKRRAMELSFALVNG-NNIRGMMKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp --SCHHHHHHHHHHHHHHCCS-SSTHHHHHHHHHHHHHCCHHHHHH
T ss_pred --CChhHHHHHHHHHHHHccc-ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 2367999999999888642 22344444455444 334444433
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=86.88 E-value=2.2 Score=49.58 Aligned_cols=212 Identities=15% Similarity=0.085 Sum_probs=107.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCC---C---chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc----ccHH
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPH---L---SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW----AGLL 729 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~---~---s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~----~g~~ 729 (947)
.+.++..|++-..|..|+..|..... . ...+...|.+.+.|+ -+.||..|+.+|+.+......- .-+.
T Consensus 246 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 34566678888888888888765311 0 012345677777775 6789999999999887532211 1133
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC--hHHHHHHHHHHhhhcCCCCCCCchHHHHH
Q 002253 730 HLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS--PREAVEFVLQLLKYNDNNGNPYSDVFWLA 807 (947)
Q Consensus 730 ~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~--p~~v~~fll~ll~~NdNs~N~ysD~~y~a 807 (947)
.++..+.+..-++ +..|+++...+++.+-..-|.. .+.+...|+.+|+ | .|...+.
T Consensus 324 ~l~p~l~~~l~d~--------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~--d------~~~~Vr~ 381 (588)
T 1b3u_A 324 QILPCIKELVSDA--------------NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK--D------ECPEVRL 381 (588)
T ss_dssp THHHHHHHHHTCS--------------CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT--C------SCHHHHH
T ss_pred HHHHHHHHHhcCC--------------CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC--C------CchHHHH
Confidence 4444444321111 2357787777777664332321 2345566777775 2 1345677
Q ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccCCCCch
Q 002253 808 ALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTI 887 (947)
Q Consensus 808 ~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (947)
+.+++|+.+.-..........++..|..+++=+ +.-+-.++++++..++..+....-.+.+...+..... +.-
T Consensus 382 ~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~ 454 (588)
T 1b3u_A 382 NIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA------KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHV 454 (588)
T ss_dssp HHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS------SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-CCc
Confidence 777777654211111112334455555444221 1123344555555554332211111111112222212 223
Q ss_pred HHHHHHHHHHhhccc
Q 002253 888 WQVRVEASRALLDLE 902 (947)
Q Consensus 888 ~~vr~~a~~~l~~~~ 902 (947)
..||.+|.++|-.+.
T Consensus 455 ~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 455 YAIREAATSNLKKLV 469 (588)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777776654
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=86.81 E-value=18 Score=42.47 Aligned_cols=200 Identities=13% Similarity=0.103 Sum_probs=119.3
Q ss_pred hcCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCC
Q 002253 666 KDGDVVAQAQAIAALEALPHLS--FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDEN 743 (947)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~ 743 (947)
+|++-.-|.-|+++|.....+. ......|.+.+.|+ -..||..||.||.++.....+-.--..++..+++...+++
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d 173 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN 173 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC
T ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC
Confidence 4678888899999999864332 12334477888775 5789999999999987532221111135555666544432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc
Q 002253 744 IGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (947)
Q Consensus 744 ~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~-----p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (947)
..|+.+-..|+..+...+... .+.+..-|+..|.. .|.|-...++++|+....
T Consensus 174 --------------~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--------~~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 174 --------------PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--------CTEWGQIFILDCLSNYNP 231 (591)
T ss_dssp --------------HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHTSCC
T ss_pred --------------hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--------CCchHHHHHHHHHHHhCC
Confidence 358888889998887654321 23445556666642 357888899999987653
Q ss_pred ccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCC--c---hh----hhhhhhcccCCCCchHH
Q 002253 819 GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFI--S---LD----QVVKLIKPFRDFNTIWQ 889 (947)
Q Consensus 819 ~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~--~---~~----~~~~~~~~~~~~~~~~~ 889 (947)
. +......+++-+.. ++-+-+..|-.+|.+++..+. ..+ + +. .+...+....+ .-..
T Consensus 232 ~--~~~~~~~~l~~l~~------~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~~L~~--~d~~ 297 (591)
T 2vgl_B 232 K--DDREAQSICERVTP------RLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLVTLLS--GEPE 297 (591)
T ss_dssp C--SHHHHHHHHHHHTT------CSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHHHHTT--SCHH
T ss_pred C--ChHHHHHHHHHHHH------HHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHHHHhc--CCcc
Confidence 2 22233344443332 233455677788888888752 111 0 00 00000001112 2368
Q ss_pred HHHHHHHHhhcccc
Q 002253 890 VRVEASRALLDLEF 903 (947)
Q Consensus 890 vr~~a~~~l~~~~~ 903 (947)
||..|+++|..+..
T Consensus 298 vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 298 VQYVALRNINLIVQ 311 (591)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 26
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.79 E-value=6 Score=46.91 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHcCCCCchh----HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCC
Q 002253 666 KDGDVVAQAQAIAALEALPHLSFN----VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFD 741 (947)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~----~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~ 741 (947)
.++|-.-|+-|+.+|......... ....+..++.|+. --||..|...|.++.++.+--.=+..|++++.+ .
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~--~- 397 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLD--VSIKRRAMELSFALVNGNNIRGMMKELLYFLDS--C- 397 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH--C-
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh--C-
Confidence 456777788888777754211111 1235666777764 459999999999998875411114455555443 0
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhc
Q 002253 742 ENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYN 793 (947)
Q Consensus 742 ~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~N 793 (947)
+.-++..+..+|+.+=.........+...|+++|+..
T Consensus 398 ---------------d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 398 ---------------EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA 434 (618)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT
T ss_pred ---------------CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhc
Confidence 1345677778888775544455667788888888744
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=85.63 E-value=5.1 Score=40.79 Aligned_cols=174 Identities=21% Similarity=0.216 Sum_probs=105.7
Q ss_pred CchhHHHHHHhhcCChHHHHHHHHHHHcCCCC---------chhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc--
Q 002253 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHL---------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (947)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~---------s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-- 723 (947)
.++|.+...+-++.|...|.+|+..|...-.. ...++..|.+.|.++. ..||.+|+.+|+.++....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHH
Confidence 45566777777889999999999988532100 0014456888888764 8999999999999886321
Q ss_pred -----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhc
Q 002253 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYN 793 (947)
Q Consensus 724 -----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~-----p~~v~~fll~ll~~N 793 (947)
...|++.|++..+. +| --+++....+|+.+-...... -..+...|+++|+..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~-----------~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 150 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSS-----------PN-------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGC-----------SC-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHcCCHHHHHHHHcC-----------CC-------HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC
Confidence 12357777766653 11 147777778887774322111 012667888888621
Q ss_pred CCCCCCCchHHHHHHHHHHhhccccccccH-H-HH-HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHH
Q 002253 794 DNNGNPYSDVFWLAALVQSVGELEFGQQSI-L-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (947)
Q Consensus 794 dNs~N~ysD~~y~a~li~al~~~~~~~~~~-~-~~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~ 862 (947)
|.-.+...+.+|+++....... . .. ..++..+-++++- -..-+...|+.+|..++
T Consensus 151 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 151 --------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIA 208 (252)
T ss_dssp --------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC------SSHHHHHHHHHHHHHHT
T ss_pred --------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC------CCHHHHHHHHHHHHHHh
Confidence 4567888888888876532211 1 11 1244445555442 23445556667777663
No 28
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=84.67 E-value=1.7 Score=50.66 Aligned_cols=209 Identities=18% Similarity=0.138 Sum_probs=113.1
Q ss_pred HHHhhcCChHHHHHHHHHHHcCCC--Cc----hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHH
Q 002253 662 NQLEKDGDVVAQAQAIAALEALPH--LS----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFY 735 (947)
Q Consensus 662 ~QL~~drdv~aq~eAi~~l~~~~~--~s----~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f 735 (947)
.++..|.+...|..|+..|..... +. ..+...|.+.+.|+ -|+||..|+.+|+.+......-.-...++..|
T Consensus 209 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l 286 (588)
T 1b3u_A 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAF 286 (588)
T ss_dssp HHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhCcccchhHHHHHH
Confidence 345578888888888887765311 01 12334566666664 69999999999998875211000122344444
Q ss_pred HhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC------hHHHHHHHHHHhhhcCCCCCCCchHHHHHHH
Q 002253 736 KSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS------PREAVEFVLQLLKYNDNNGNPYSDVFWLAAL 809 (947)
Q Consensus 736 ~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~------p~~v~~fll~ll~~NdNs~N~ysD~~y~a~l 809 (947)
.+..-++ +..|+++...+++.+-..-|.. .+.+...|..+++ | .+...+.++
T Consensus 287 ~~~l~d~--------------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~--d------~~~~vR~~a 344 (588)
T 1b3u_A 287 QNLMKDC--------------EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS--D------ANQHVKSAL 344 (588)
T ss_dssp HHHHTCS--------------SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT--C------SCHHHHHHH
T ss_pred HHHhCCC--------------cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc--C------CCHHHHHHH
Confidence 4432221 1357888888888776554433 2446666777664 2 234688888
Q ss_pred HHHhhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCc-hhhhhhhhcccCCCCchH
Q 002253 810 VQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIW 888 (947)
Q Consensus 810 i~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 888 (947)
+.+|+.+.-.-........++.-+..+++ |. +.-|-.+++.++..+... .|.-. .+.+...+..... +..+
T Consensus 345 ~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~-----~~~Vr~~a~~~l~~l~~~-~~~~~~~~~~lp~l~~~~~-d~~~ 416 (588)
T 1b3u_A 345 ASVIMGLSPILGKDNTIEHLLPLFLAQLK-DE-----CPEVRLNIISNLDCVNEV-IGIRQLSQSLLPAIVELAE-DAKW 416 (588)
T ss_dssp HTTGGGGHHHHCHHHHHHHTHHHHHHHHT-CS-----CHHHHHHHHTTCHHHHHH-SCHHHHHHHHHHHHHHHHT-CSSH
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhC-CC-----chHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhc-CCCc
Confidence 88888763211111223344445555554 32 233555666666655321 11100 0111111112222 3457
Q ss_pred HHHHHHHHHhhccc
Q 002253 889 QVRVEASRALLDLE 902 (947)
Q Consensus 889 ~vr~~a~~~l~~~~ 902 (947)
.||.+|+++|-.+.
T Consensus 417 ~vr~~~~~~l~~l~ 430 (588)
T 1b3u_A 417 RVRLAIIEYMPLLA 430 (588)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 89999999988764
No 29
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.52 E-value=2.5 Score=53.69 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhcccc-ccCCCchhHHHHHHHHHHHHHHhcCCCchhhhhhhhcc
Q 002253 802 DVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRL-MPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKP 880 (947)
Q Consensus 802 D~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~-~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 880 (947)
|..=+-..|+||||+..+. +++.|.+|+.-.+. -.+...-|-++++.+|++++- .-|....--++.-
T Consensus 453 ~~~~~~~~LkaLGN~g~p~--------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~~v~~il~~i 520 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQPN--------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPRKVQEIVLPI 520 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCGG--------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhccCChh--------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh----hchHHHHHHHHHH
Confidence 4455778889999987642 35566666542211 223344577888998887641 2231111122344
Q ss_pred cCCCCchHHHHHHHHHHhhcccccccChhhHHHHHHHHhccCCCcc
Q 002253 881 FRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLR 926 (947)
Q Consensus 881 ~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~r 926 (947)
|.+......||++|+..|++- +.....|+-+...+..||+.-
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm~t----~P~~~~l~~ia~~l~~E~~~Q 562 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFFES----KPSVALVSMVAVRLRREPNLQ 562 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHHHT----CCCHHHHHHHHHHHTTCSCHH
T ss_pred hcCCCCChHHHHHHHHHHHHH----CcCHHHHHHHHHHHhhCchHH
Confidence 556677799999999999862 222445777777777777653
No 30
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=77.40 E-value=16 Score=43.38 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=66.6
Q ss_pred hhcCChHHHHHHHHHHHcCCCCc--hh----HHhHHHhhhc-cCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHh
Q 002253 665 EKDGDVVAQAQAIAALEALPHLS--FN----VVNTLNNFLS-DSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKS 737 (947)
Q Consensus 665 ~~drdv~aq~eAi~~l~~~~~~s--~~----~~~~L~~~l~-d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~ 737 (947)
-.++|-.-|+-|++.|...-... .. ....+.++|. |+.. -||..|...|.+..++.+--.=+..|+++..+
T Consensus 338 L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~--~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 338 LQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDV--SVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET 415 (621)
T ss_dssp SSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCH--hHHHHHHHHHHHHcChhhHHHHHHHHHHHHHh
Confidence 34688899999998888653221 11 2234556666 6653 39999999999999875311113344444443
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhc
Q 002253 738 RRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYN 793 (947)
Q Consensus 738 ~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~N 793 (947)
++ .-++..+..+|+.+=...........++|+++|+..
T Consensus 416 --~d----------------~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 416 --AD----------------YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA 453 (621)
T ss_dssp --CC----------------HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH
T ss_pred --cC----------------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 11 123445556676654333445677889999999854
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=77.17 E-value=17 Score=35.67 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=86.0
Q ss_pred CchhHHHHHHhhcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc--
Q 002253 655 QPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-- 723 (947)
Q Consensus 655 qp~~m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-- 723 (947)
.+.+.....|.++.|...|.+|+.+|......+.. +...|.+.|.++ --.||..|+.+|+.++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHH
Confidence 45677888888999999999999988865322211 345677888775 56999999999999874321
Q ss_pred -----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH--------HHHHHHHHHh
Q 002253 724 -----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR--------EAVEFVLQLL 790 (947)
Q Consensus 724 -----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~--------~v~~fll~ll 790 (947)
...|++.|+++.+. + +.-+++....+|+.+-.. ++. .+...|+++|
T Consensus 89 ~~~i~~~g~i~~L~~lL~~-----------~-------~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll 147 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSS-----------P-------NEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLL 147 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTC-----------S-------CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcC-----------C-------cHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCcHHHHHHHH
Confidence 12467788776643 1 124677777777776421 222 2456677777
Q ss_pred hhcCCCCCCCchHHHHHHHHHHhhcccc
Q 002253 791 KYNDNNGNPYSDVFWLAALVQSVGELEF 818 (947)
Q Consensus 791 ~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (947)
+. .|.-.+...+.+|+++..
T Consensus 148 ~~--------~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 148 SS--------PNEQILQEALWALSNIAS 167 (210)
T ss_dssp TC--------SCHHHHHHHHHHHHHHHT
T ss_pred cC--------CCHHHHHHHHHHHHHHHc
Confidence 62 134566666677776543
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=76.38 E-value=26 Score=40.17 Aligned_cols=206 Identities=18% Similarity=0.166 Sum_probs=121.4
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHcCCC----Cc------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc---
Q 002253 657 VQMWINQLEKDGDVVAQAQAIAALEALPH----LS------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET--- 723 (947)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~~~~~----~s------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~--- 723 (947)
--.++..|+ +.|...|..|+..|.+.-. +. ..++..|.+.|.++ .-..||.+||.+|+.++....
T Consensus 89 i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHH
Confidence 344555665 5688999999999886421 11 12455677778664 257899999999999886321
Q ss_pred ----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChH-----HHHHHHHHHhhhcC
Q 002253 724 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPR-----EAVEFVLQLLKYND 794 (947)
Q Consensus 724 ----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~-----~v~~fll~ll~~Nd 794 (947)
...+++.|+++.+.. +--++.....+|+.+-..+..+.. .+...|+.+|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~------------------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-- 226 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTG------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-- 226 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--
T ss_pred HHHHHCCCHHHHHHHHcCC------------------CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--
Confidence 124678888888751 113677777777766422111111 246678888863
Q ss_pred CCCCCCchHHHHHHHHHHhhcccccc---ccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHH-------
Q 002253 795 NNGNPYSDVFWLAALVQSVGELEFGQ---QSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK------- 864 (947)
Q Consensus 795 Ns~N~ysD~~y~a~li~al~~~~~~~---~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~------- 864 (947)
.|.-.+...+.+|+++..+. ........++.-+.+++.-+ ..-|-..++.+|..|+..
T Consensus 227 ------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~L~~~~~~~~~~ 294 (530)
T 1wa5_B 227 ------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM------DTETLVDACWAISYLSDGPQEAIQA 294 (530)
T ss_dssp ------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC------CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 35567778888888765332 11222334566666665422 223444555666665421
Q ss_pred --hcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccc
Q 002253 865 --LSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (947)
Q Consensus 865 --~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (947)
-.|.+|. +..++. ..-..||..|+.+|-.+..
T Consensus 295 ~~~~~~v~~--Lv~lL~-----~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 295 VIDVRIPKR--LVELLS-----HESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp HHHTTCHHH--HHHGGG-----CSCHHHHHHHHHHHHHHTT
T ss_pred HHhcCcHHH--HHHHHC-----CCChhhHHHHHHHHHHHHc
Confidence 0133332 333332 1236899999999988764
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=75.72 E-value=43 Score=40.75 Aligned_cols=240 Identities=15% Similarity=0.074 Sum_probs=118.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (947)
.+-+|-+++|...|..|+.+|......+. ..+..|.+.|.+...--.||..|+.+|+.++....
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~ 482 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 34455567888889988888876433221 24556777776522122799999999998874211
Q ss_pred ---ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC----hHHHHHHHHHHhhhcCC-
Q 002253 724 ---DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS----PREAVEFVLQLLKYNDN- 795 (947)
Q Consensus 724 ---~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~----p~~v~~fll~ll~~NdN- 795 (947)
...|++.|+++.+.- + ..-|+++...+|+.+-...... -..+...|+++|+..+.
T Consensus 483 ~v~~~~~l~~L~~lL~~~-----------~------~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPP-----------S------HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHHTTCHHHHHHTTSTT-----------C------CHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhcCC-----------C------hHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 124677777655421 1 0247787778887764210000 01256677888874320
Q ss_pred --------CCC-----CCchHHHHHHHHHHhhccccccccHHHH--HHHHHHHHHHHhccccccCCCchhHHHHHHHHHH
Q 002253 796 --------NGN-----PYSDVFWLAALVQSVGELEFGQQSILFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQ 860 (947)
Q Consensus 796 --------s~N-----~ysD~~y~a~li~al~~~~~~~~~~~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~ 860 (947)
-.| .-++.-.+...+.+|+++..+......+ ..++.-+..++.- -..-|-..|..+|.+
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~~ 619 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYS------PIENIQRVAAGVLCE 619 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGC------SCHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcC------CCHHHHHHHHHHHHH
Confidence 011 1122334566777777765432211111 1133444444432 122233445556655
Q ss_pred HHH--------HhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccccccChh-h--HHHHHHHHhccCCCccccc
Q 002253 861 IAL--------KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGID-S--ALSLFIKSVEEEPSLRGEI 929 (947)
Q Consensus 861 l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~-~--~l~~~~~~~~~~~~~r~~~ 929 (947)
|+. .-.|.++ .+..+.. ..-..||..|..+|-.+........ . ++.++-..+.+++..+...
T Consensus 620 L~~~~~~~~~i~~~g~i~--~L~~Ll~-----~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~w~~~ 692 (780)
T 2z6g_A 620 LAQDKEAAEAIEAEGATA--PLTELLH-----SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNET 692 (780)
T ss_dssp HHTSHHHHHHHHHTTCHH--HHHHGGG-----CSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC-----------
T ss_pred HhcCHHHHHHHHHCCCHH--HHHHHHc-----CCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCCcccccC
Confidence 431 1122222 2333322 2236899999999988865333211 1 3444445566666555543
No 34
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=73.41 E-value=31 Score=40.77 Aligned_cols=239 Identities=12% Similarity=0.082 Sum_probs=123.9
Q ss_pred cCChHHHHHHHHHHHcCCCCc--hhHHhHHHhhh--ccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCC
Q 002253 667 DGDVVAQAQAIAALEALPHLS--FNVVNTLNNFL--SDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDE 742 (947)
Q Consensus 667 drdv~aq~eAi~~l~~~~~~s--~~~~~~L~~~l--~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~ 742 (947)
|++-.-+--|+++|+....+. ..+...+.++| .|. ---||..||.||.++-....+-.-...++...++..+++
T Consensus 122 ~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~ 199 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQ 199 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCC
Confidence 677777889999999764332 12344566777 554 557999999999987643221111011222222222332
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----ChHHHHHHHHHHhhhcCCCCCC-----CchHHHHHHHHHHh
Q 002253 743 NIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGNP-----YSDVFWLAALVQSV 813 (947)
Q Consensus 743 ~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~----~p~~v~~fll~ll~~NdNs~N~-----ysD~~y~a~li~al 813 (947)
+ ..|+-+...++..+...+.. .-+-+.+.|-.++.-++.+.-. -.|.|-...+++.|
T Consensus 200 d--------------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll 265 (621)
T 2vgl_A 200 H--------------LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL 265 (621)
T ss_dssp C--------------HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred C--------------ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence 2 24777777777776544321 1222444455555433221111 23789999999999
Q ss_pred hccccccccHHHHHHHHHHHHHHHhc-ccccc-----CCCc---hhHHHHHHHHHHHHHHhcCCCch-hhhhhhhcccCC
Q 002253 814 GELEFGQQSILFLSSLLKRIDRLLQF-DRLMP-----SYNG---ILTISCIRTLTQIALKLSGFISL-DQVVKLIKPFRD 883 (947)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~ei~r~~~~-d~~~p-----sy~~---~vt~~~l~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 883 (947)
+..... ++....+.+.+-+++.++. ++ .| .+.| .|-..|.+++..+. ...+. ......+..+..
T Consensus 266 ~~~~~~-~d~~~~~~l~~~L~~il~~~~~-~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~~~~~L~~~L~ 339 (621)
T 2vgl_A 266 QCYPPP-EDPAVRGRLTECLETILNKAQE-PPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVRACNQLGQFLQ 339 (621)
T ss_dssp GGSSSC-SSHHHHHHHHHHHHHHHHHHHS-CCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHSS
T ss_pred HHhCCC-CCHHHHHHHHHHHHHHHHhhcc-CcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHhc
Confidence 876532 1222334444545555532 11 12 2333 67778888887752 11110 000111122222
Q ss_pred CCchHHHHHHHHHHhhcccccccChhh---HHHHHHHHh--ccCCCcccc
Q 002253 884 FNTIWQVRVEASRALLDLEFHCNGIDS---ALSLFIKSV--EEEPSLRGE 928 (947)
Q Consensus 884 ~~~~~~vr~~a~~~l~~~~~~~~~~~~---~l~~~~~~~--~~~~~~r~~ 928 (947)
..-..+|..|+++|..+......... ....++..+ +.|+++|..
T Consensus 340 -~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~ 388 (621)
T 2vgl_A 340 -HRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQR 388 (621)
T ss_dssp -CSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHH
Confidence 12358999999999888643321111 122333333 566777766
No 35
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=72.99 E-value=79 Score=38.29 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=43.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccc
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASE 721 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~ 721 (947)
.+.+.-.|++-..|..|+.+|........ .+...|.+.+.|+ ...||..|+.+|+++...
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHh
Confidence 44455578899999999999986533211 1345577778775 588999999999988753
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=72.11 E-value=77 Score=36.13 Aligned_cols=208 Identities=15% Similarity=0.202 Sum_probs=113.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (947)
++.-|+.+.+...|.+|..+|.....++.. ++..|.+.|.++ .-.||..|+.+|+.++....
T Consensus 105 LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~ 182 (510)
T 3ul1_B 105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVI 182 (510)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444566666788899999998865333221 345678888764 57899999999999875421
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCCCCh----HHHHHHHHHHhhhcCCCCC
Q 002253 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADNKSP----REAVEFVLQLLKYNDNNGN 798 (947)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~-r~~~~~~p----~~v~~fll~ll~~NdNs~N 798 (947)
...|+..|+...+.. +.+.... -+++....+++.+ |+.....+ ..+...|..+|+.
T Consensus 183 ~~G~i~~Ll~lL~~~------------~~~~~~~-~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~------ 243 (510)
T 3ul1_B 183 KHGAIDPLLALLAVP------------DLSTLAC-GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH------ 243 (510)
T ss_dssp HTTCHHHHHHHTCSS------------CGGGSCH-HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC------
T ss_pred HcCChHHHHHHHHhc------------cchhhhH-HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc------
Confidence 224577777666431 1111111 2344455566554 33333333 2355667777763
Q ss_pred CCchHHHHHHHHHHhhccccccccH-HHH--HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHH---------Hhc
Q 002253 799 PYSDVFWLAALVQSVGELEFGQQSI-LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KLS 866 (947)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~-~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~---------~~~ 866 (947)
.|.--+...+.+|+.+.....+. ..+ ..++.-+-.++. +-..-+-..|+.+|..+.. --.
T Consensus 244 --~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~ 315 (510)
T 3ul1_B 244 --NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIVTGTDEQTQKVIDA 315 (510)
T ss_dssp --SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc------CCChhhhhHHHHHHHHhhcCCHHHHHHHhhc
Confidence 23446777777887765432211 010 113333444443 2223344566677766531 112
Q ss_pred CCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccc
Q 002253 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (947)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (947)
|.++. +..+ .. ..-..||..|..+|--+..
T Consensus 316 g~l~~--L~~L----L~-~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 316 GALAV--FPSL----LT-NPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp TGGGG--CC-C----TT-CSSHHHHHHHHHHHHHHTT
T ss_pred cchHH--HHHH----hc-CCCHHHHHHHHHHHHHHHc
Confidence 32221 2222 22 2236799999999988764
No 37
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=68.81 E-value=68 Score=35.20 Aligned_cols=204 Identities=17% Similarity=0.204 Sum_probs=119.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCc---------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLS---------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s---------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (947)
.+..|+.+.+...|.+|+..|......+ ..++..|.+.|.++ -..||..|+.+|+.++....
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~ 146 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVL 146 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4444554448889999998888643211 12456788888774 57999999999999886431
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhcCCCCC
Q 002253 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGN 798 (947)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~-----p~~v~~fll~ll~~NdNs~N 798 (947)
...+++.|+++.+. + .+--+++....+++.+-...+.. -..+...|+++|+.
T Consensus 147 ~~~~i~~L~~~l~~---~--------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------ 203 (450)
T 2jdq_A 147 DCNILPPLLQLFSK---Q--------------NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------ 203 (450)
T ss_dssp HTTCHHHHHHHTTS---C--------------CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------
T ss_pred HCCCHHHHHHHhcC---C--------------CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------
Confidence 12356777766642 0 01246777778887764322111 14577888888872
Q ss_pred CCchHHHHHHHHHHhhcccccccc-HH-HH-HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHH---------hc
Q 002253 799 PYSDVFWLAALVQSVGELEFGQQS-IL-FL-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LS 866 (947)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~-~~-~~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~---------~~ 866 (947)
.|.--+...+.+|+++...... .. .. ..++..+-+++.- -..-+...|+.+|..++.. -.
T Consensus 204 --~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 275 (450)
T 2jdq_A 204 --SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH------NDYKVVSPALRAVGNIVTGDDIQTQVILNC 275 (450)
T ss_dssp --CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC------CchhHHHHHHHHHHHHhhCChHHHHHHHHC
Confidence 2455677778888876543211 11 11 1245555555542 1234556677777776420 01
Q ss_pred CCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccc
Q 002253 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (947)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (947)
|.+| .+..++ .. .-..||.+|..+|-.+..
T Consensus 276 ~~l~--~L~~ll----~~-~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 276 SALQ--SLLHLL----SS-PKESIKKEACWTISNITA 305 (450)
T ss_dssp THHH--HHHHHT----TC-SSHHHHHHHHHHHHHHTT
T ss_pred ccHH--HHHHHH----cC-CCHHHHHHHHHHHHHHHc
Confidence 2121 222332 22 236899999999988763
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=66.58 E-value=43 Score=33.79 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcC----CC----CchhHHhHHHhhhc-cCcchhHHHHHHHHHHHhhcc
Q 002253 660 WINQLEKDGDVVAQAQAIAALEAL----PH----LSFNVVNTLNNFLS-DSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~----~~----~s~~~~~~L~~~l~-d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
+..++ +|+|..-|.+|+..|... +. .-..++.+|.+.+. |. -..||..|+.+|+.++.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~ 86 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAK 86 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHH
Confidence 45555 689999999999887642 21 11246778888885 74 68899999999998884
No 39
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.97 E-value=2.2e+02 Score=35.17 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHc--CCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCC
Q 002253 670 VVAQAQAIAALEA--LPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLP 747 (947)
Q Consensus 670 v~aq~eAi~~l~~--~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p 747 (947)
-.-|.-|+.+|+- .-+.+..+.+.|..+|.|... -+|..||.+|+.+-.-..+-.-+..|+....+.
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------- 519 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------- 519 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---------
Confidence 4567778888874 233445678899999987654 578899999997622111112245565554431
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHH
Q 002253 748 RPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLS 827 (947)
Q Consensus 748 ~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~ 827 (947)
.+ + -+++++..+|+.+- ..-++..+-|+++|+..+ |++ .=|-+.+..+++-+.++. ..-++
T Consensus 520 -~~------e-~vrR~aalgLGll~----~g~~e~~~~li~~L~~~~---dp~--vRygaa~alglAyaGTGn--~~aIq 580 (963)
T 4ady_A 520 -QH------G-NITRGLAVGLALIN----YGRQELADDLITKMLASD---ESL--LRYGGAFTIALAYAGTGN--NSAVK 580 (963)
T ss_dssp -SC------H-HHHHHHHHHHHHHT----TTCGGGGHHHHHHHHHCS---CHH--HHHHHHHHHHHHTTTSCC--HHHHH
T ss_pred -Cc------H-HHHHHHHHHHHhhh----CCChHHHHHHHHHHHhCC---CHH--HHHHHHHHHHHHhcCCCC--HHHHH
Confidence 11 1 36788888898762 122345666677777322 222 123344444444454443 22222
Q ss_pred HHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCc-hhhhhhhhcccCCCCchHHHHHHHHHHhhccccccc
Q 002253 828 SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS-LDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN 906 (947)
Q Consensus 828 ~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~ 906 (947)
+++ +.+.-|. ..-|-.++..+|..+ +.|... ...+..++..+ ++ ..||..|-.||=.+.. ..
T Consensus 581 ~LL----~~~~~d~-----~d~VRraAViaLGlI---~~g~~e~v~rlv~~L~~~---~d-~~VR~gAalALGli~a-Gn 643 (963)
T 4ady_A 581 RLL----HVAVSDS-----NDDVRRAAVIALGFV---LLRDYTTVPRIVQLLSKS---HN-AHVRCGTAFALGIACA-GK 643 (963)
T ss_dssp HHH----HHHHHCS-----CHHHHHHHHHHHHHH---TSSSCSSHHHHTTTGGGC---SC-HHHHHHHHHHHHHHTS-SS
T ss_pred HHH----HHhccCC-----cHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHhc---CC-HHHHHHHHHHHHHhcc-CC
Confidence 222 2222221 112344455554433 233321 12233333333 22 5788888887765542 44
Q ss_pred ChhhHHHH
Q 002253 907 GIDSALSL 914 (947)
Q Consensus 907 ~~~~~l~~ 914 (947)
+...++..
T Consensus 644 ~~~~aid~ 651 (963)
T 4ady_A 644 GLQSAIDV 651 (963)
T ss_dssp CCHHHHHH
T ss_pred CcHHHHHH
Confidence 44455553
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=65.38 E-value=79 Score=37.14 Aligned_cols=238 Identities=15% Similarity=0.094 Sum_probs=126.2
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 002253 659 MWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (947)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (947)
-..-+|-++.|...|..|..+|......+. ..+..|.+.|.+...-..||..|+.+|+.++....
T Consensus 266 ~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q 345 (644)
T 2z6h_A 266 GTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 345 (644)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455567888888888877765322211 13556777776532236899999999999875211
Q ss_pred ----ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----ChHHHHHHHHHHhhhcCC
Q 002253 724 ----DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDN 795 (947)
Q Consensus 724 ----~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~----~p~~v~~fll~ll~~NdN 795 (947)
...|++.|++..+. ++ +.-++++...+|+.+-..... .-..+...|+++|+..+.
T Consensus 346 ~~v~~~~~l~~L~~lL~~-----------~~------~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~ 408 (644)
T 2z6h_A 346 NAVRLHYGLPVVVKLLHP-----------PS------HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 408 (644)
T ss_dssp HHHHHTTHHHHHHHTTST-----------TC------CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHccChHHHHHHhCc-----------cC------chHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccch
Confidence 12456666655442 11 123777777777765321100 011356778888876431
Q ss_pred --------------CCCCCchHHHHHHHHHHhhccccccccHHHHH--HHHHHHHHHHhccccccCCCchhHHHHHHHHH
Q 002253 796 --------------NGNPYSDVFWLAALVQSVGELEFGQQSILFLS--SLLKRIDRLLQFDRLMPSYNGILTISCIRTLT 859 (947)
Q Consensus 796 --------------s~N~ysD~~y~a~li~al~~~~~~~~~~~~~~--~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~ 859 (947)
-...-++.-.+.+.+.||+++.........+. .++.-+.+++.- +..+ |-..|..+|.
T Consensus 409 ~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~-----~~~~-v~~~a~~aL~ 482 (644)
T 2z6h_A 409 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS-----PIEN-IQRVAAGVLC 482 (644)
T ss_dssp HHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTC-----SCHH-HHHHHHHHHH
T ss_pred hhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcC-----CCHH-HHHHHHHHHH
Confidence 11122345566677788877654322211111 244555555531 1223 3344455555
Q ss_pred HHHH--------HhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccccccChhh----HHHHHHHHhccCCCccc
Q 002253 860 QIAL--------KLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDS----ALSLFIKSVEEEPSLRG 927 (947)
Q Consensus 860 ~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~----~l~~~~~~~~~~~~~r~ 927 (947)
+++. .-.|.+ +.+..+.. ..-..||..|..+|-.+.... +... ++..+-..+.+|+..+.
T Consensus 483 ~l~~~~~~~~~i~~~g~l--~~L~~ll~-----~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~il~~~~~~~~~~w~ 554 (644)
T 2z6h_A 483 ELAQDKEAAEAIEAEGAT--APLTELLH-----SRNEGVATYAAAVLFRMSEDK-PQDYKKRLSVELTSSLFRTEPMAWN 554 (644)
T ss_dssp HHHTSHHHHHHHHHTTCH--HHHHHHTT-----CSCHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHSCCSCGGGC
T ss_pred HHHcCHHHHHHHHHcCCh--hHHHHHHc-----CCCHHHHHHHHHHHHHHhccC-cHhhhcccchHHHHHHHhCCCcccc
Confidence 5431 112322 23333321 123579999999998886533 2221 34444455666655544
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=64.88 E-value=1.1e+02 Score=34.79 Aligned_cols=209 Identities=16% Similarity=0.196 Sum_probs=113.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 002253 659 MWINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (947)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (947)
.++.-|..+.+..-|.+|+.+|.....++.. ++..|.+.|.++ .-.||..|+.||+.++....
T Consensus 123 ~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i 200 (529)
T 3tpo_A 123 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLV 200 (529)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3455666777788999999888865332221 344577777664 67899999999999885421
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCCCCh----HHHHHHHHHHhhhcCCCC
Q 002253 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADNKSP----REAVEFVLQLLKYNDNNG 797 (947)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~-r~~~~~~p----~~v~~fll~ll~~NdNs~ 797 (947)
...|+..|+...+. ++. +....- +++....+++.+ |+.+...+ ..+...|..+|+.+
T Consensus 201 ~~~g~i~~Ll~lL~~--~~~----------~~~~~~-~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---- 263 (529)
T 3tpo_A 201 IKHGAIDPLLALLAV--PDL----------STLACG-YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---- 263 (529)
T ss_dssp HHTTCHHHHHHTTCS--SCG----------GGSCHH-HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS----
T ss_pred HHcCCcHHHHHHHhc--cch----------hHhHHH-HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC----
Confidence 23456777765542 110 111112 334455566554 33333222 24556778888643
Q ss_pred CCCchHHHHHHHHHHhhccccccccH-HHH--HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHH---------Hh
Q 002253 798 NPYSDVFWLAALVQSVGELEFGQQSI-LFL--SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL---------KL 865 (947)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~-~~~--~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~---------~~ 865 (947)
|.--+...+.||+.+.....+. ..+ ..++.-+-.++. +-..-|-..|+.+|..++. .-
T Consensus 264 ----~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 264 ----DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG------ATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp ----CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc------CCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 3446677777887664432211 010 112333333433 2233445567777766531 11
Q ss_pred cCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccc
Q 002253 866 SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (947)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (947)
.|.++. +..++. ..-..||..|..+|--+..
T Consensus 334 ~g~l~~--L~~LL~-----~~~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 334 AGALAV--FPSLLT-----NPKTNIQKEATWTMSNITA 364 (529)
T ss_dssp TTGGGG--HHHHTT-----CSSHHHHHHHHHHHHHHHT
T ss_pred cccHHH--HHHHHc-----CCCHHHHHHHHHHHHHHhc
Confidence 233332 223332 1235799999999987754
No 42
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=64.81 E-value=21 Score=45.86 Aligned_cols=236 Identities=11% Similarity=0.083 Sum_probs=122.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcC-CCC--------chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHH
Q 002253 660 WINQLEKDGDVVAQAQAIAALEAL-PHL--------SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLH 730 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~-~~~--------s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~ 730 (947)
+..++ .+.|-..|..|...|.+. ... ...+...|.+.|.|+ -+.||..|+.+|+..+..-.. ..+..
T Consensus 11 lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~~-~~~~~ 86 (1230)
T 1u6g_C 11 LLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVKE-YQVET 86 (1230)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCH-HHHHH
T ss_pred HHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCCH-HHHHH
Confidence 34444 357777788887766532 111 113556677888764 689999999999988753211 11233
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----------ChHHHHHHHHHHhhhcCCCCCCC
Q 002253 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----------SPREAVEFVLQLLKYNDNNGNPY 800 (947)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~----------~p~~v~~fll~ll~~NdNs~N~y 800 (947)
++...-+..-++. + -++.+.-.+++.+=..-+. ..+++..+|++.+.- +.
T Consensus 87 i~~~Ll~~l~d~~-----~---------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~---~~--- 146 (1230)
T 1u6g_C 87 IVDTLCTNMLSDK-----E---------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK---QE--- 146 (1230)
T ss_dssp HHHHHHHHTTCSS-----S---------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC---CS---
T ss_pred HHHHHHHHhcCCc-----H---------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC---CC---
Confidence 3333222211211 1 1455555666654333232 256778888888752 22
Q ss_pred chHHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCchhh-hhhh
Q 002253 801 SDVFWLAALVQSVGELE--FGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQ-VVKL 877 (947)
Q Consensus 801 sD~~y~a~li~al~~~~--~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~~~~-~~~~ 877 (947)
|.-.+...+++|+.+. .+..-..++..++..+-..+.-+ +..|..+++++|..++....... ++. +..+
T Consensus 147 -~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~------~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l 218 (1230)
T 1u6g_C 147 -DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP------RLAVRKRTIIALGHLVMSCGNIV-FVDLIEHL 218 (1230)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS------SHHHHHHHHHHHHHHTTTC-----CTTHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence 2356777788887642 11111123455666655554321 23566777788877643211100 111 1111
Q ss_pred hcccCCCCchHHHHHHHHHHhhcccccc-----cChhhHHHHHHHHh-ccCCCcccc
Q 002253 878 IKPFRDFNTIWQVRVEASRALLDLEFHC-----NGIDSALSLFIKSV-EEEPSLRGE 928 (947)
Q Consensus 878 ~~~~~~~~~~~~vr~~a~~~l~~~~~~~-----~~~~~~l~~~~~~~-~~~~~~r~~ 928 (947)
+....+.. -..+|.+|++||..+.... .-....+..++..+ +++|.+|..
T Consensus 219 ~~~L~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 219 LSELSKND-SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp HHHHHHTC-SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHHhccCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 11111111 1357888899988775321 11245677777666 456776654
No 43
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=61.75 E-value=39 Score=38.49 Aligned_cols=206 Identities=18% Similarity=0.175 Sum_probs=119.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 002253 659 MWINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (947)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (947)
.++..|..+.+...|.+|+.+|......+. .++..|.+.|.++ .-.||..|+.+|+.++....
T Consensus 121 ~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i 198 (528)
T 4b8j_A 121 RFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLV 198 (528)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 345555544348889999988886533221 1455678888774 57999999999999875322
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh----HHHHHHHHHHhhhcCCCCC
Q 002253 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP----REAVEFVLQLLKYNDNNGN 798 (947)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p----~~v~~fll~ll~~NdNs~N 798 (947)
...+++.|++..++ . . +--+++....+|+.+-....... ..+...|+.+|+.
T Consensus 199 ~~~g~l~~Ll~lL~~-----------~---~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~------ 255 (528)
T 4b8j_A 199 LANGALLPLLAQLNE-----------H---T---KLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS------ 255 (528)
T ss_dssp HHTTCHHHHHHTCCT-----------T---C---CHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC------
T ss_pred HHCCcHHHHHHHHhc-----------C---C---CHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC------
Confidence 11346666654421 0 0 12367777788877644322222 2367788888853
Q ss_pred CCchHHHHHHHHHHhhccccccccH--HHHH-HHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHH---------hc
Q 002253 799 PYSDVFWLAALVQSVGELEFGQQSI--LFLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALK---------LS 866 (947)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~--~~~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~---------~~ 866 (947)
.|.--+...+.+|+++..+.... ...+ .++.-+-.++.-. ..-|...|+.+|..++.. -.
T Consensus 256 --~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 327 (528)
T 4b8j_A 256 --NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP------SPSVLIPALRTVGNIVTGDDAQTQCIIDH 327 (528)
T ss_dssp --CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS------CHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC------ChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 24567888888998876432211 1111 2344455554422 335566777888776420 01
Q ss_pred CCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccc
Q 002253 867 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (947)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (947)
|.+| .+..++ ..+....||.+|..+|-.+..
T Consensus 328 ~~l~--~L~~lL----~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 328 QALP--CLLSLL----TQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp THHH--HHHHHH----HSCCCHHHHHHHHHHHHHHHT
T ss_pred hhHH--HHHHHH----cCCCcHHHHHHHHHHHHHHHC
Confidence 1222 233332 223246899999999888764
No 44
>2y3u_A Collagenase, collagenase G; hydrolase, gluzincin, metalloprotease; HET: P6G FLC; 2.55A {Clostridium histolyticum} PDB: 2y50_A* 2y6i_A*
Probab=61.04 E-value=4.1 Score=49.09 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCC------CCccEEEeCCCCccc--------ccccccchhhcccc--cccCcccc
Q 002253 276 SKIHNTVEFFHNAFSHYETYLDAKFPF------GSYKQVFLAPEMAVS--------SSTFGAAMGIFSSQ--ILYDEKVI 339 (947)
Q Consensus 276 ~~~~~~~~~~~~~l~~~e~~~g~~YP~------~k~~~V~vp~~~~~~--------~~~~gagl~~~~~~--lL~~~~~~ 339 (947)
++++.++..+.+.-..|-..++...|. .++++++.++..... ..+.| |+-+-... +-|... .
T Consensus 338 ~~~~~~~~a~k~~e~~Fh~vl~t~~p~~~~~~~~~L~Vvvf~s~~dY~~~~~lfg~~TdNG-G~YleG~~~f~aYe~~-~ 415 (785)
T 2y3u_A 338 EKIKRLYWASREVKSQFHRVVGNDKALEVGNADDVLTMKIFNSPEEYKFNTNINGVSTDNG-GLYIEPRGTFYTYERT-P 415 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSSSSCGGGSEEEEEESSHHHHTHHHHHHCCCCSSS-CEEEGGGTEEEEECCC-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCeEEEEEECCHHHHhhcccccCCcCCCc-eEEEeCCceEEEEecc-C
Confidence 455665555666556677777776664 257777765211110 00111 22111111 111110 0
Q ss_pred chh-hHHHHHHHHHHHHhhhccccCCCCCC---------hhHHHHHHHHHHHH
Q 002253 340 DQA-IDTSIKLSFALARQWFGVYITPELPN---------DEWLLDGLAGFLTD 382 (947)
Q Consensus 340 d~~-~~~~~~laHELAHQWFG~lVt~~~w~---------d~WL~EGfA~Y~~~ 382 (947)
+.. +....++.||++|.-=|-+..+..|. -.|+.||+|.||+.
T Consensus 416 ~~si~nLee~f~HEytHyLdgRy~~~G~f~~~~~y~~~~~vW~~EG~AEY~s~ 468 (785)
T 2y3u_A 416 QQSIFSLEELFRHEYTHYLQARYLVDGLWGQGPFYEKNRLTWFDEGTAEFFAG 468 (785)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHTSCSSTTSSGGGTTTCSHHHHHHHHHHHTT
T ss_pred ccceEeecccccchhhhccccccccccccccCcccccCCCceehhhHHHHHhc
Confidence 111 11233679999999977666666665 57999999999964
No 45
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.79 E-value=78 Score=39.12 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=89.9
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHH--cCCCCchhHHh-HHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHH
Q 002253 657 VQMWINQLEKDGDVVAQAQAIAALE--ALPHLSFNVVN-TLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVK 733 (947)
Q Consensus 657 ~~m~~~QL~~drdv~aq~eAi~~l~--~~~~~s~~~~~-~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~ 733 (947)
-.+.+..|..+.|-..|+-|+.++. ...+++..++. .|..+..|..-+ ||..|+.+|+.+...+.. -...++.
T Consensus 543 ~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~--VRraAViaLGlI~~g~~e--~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDD--VRRAAVIALGFVLLRDYT--TVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHH--HHHHHHHHHHHHTSSSCS--SHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHH--HHHHHHHHHHhhccCCHH--HHHHHHH
Confidence 4577888999999999999887665 22344555555 455556565444 899999999987644321 1233322
Q ss_pred HHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHh
Q 002253 734 FYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSV 813 (947)
Q Consensus 734 ~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al 813 (947)
.+.+ + .+-.|+.+.|-||+.+-..+| -++|.+.|..+++ | +|.+-+.+.+.||
T Consensus 619 ~L~~-~----------------~d~~VR~gAalALGli~aGn~--~~~aid~L~~L~~--D------~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 619 LLSK-S----------------HNAHVRCGTAFALGIACAGKG--LQSAIDVLDPLTK--D------PVDFVRQAAMIAL 671 (963)
T ss_dssp TGGG-C----------------SCHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHT--C------SSHHHHHHHHHHH
T ss_pred HHHh-c----------------CCHHHHHHHHHHHHHhccCCC--cHHHHHHHHHHcc--C------CCHHHHHHHHHHH
Confidence 2221 1 123589999999999964444 4788887777764 2 3788999999999
Q ss_pred hcccccc
Q 002253 814 GELEFGQ 820 (947)
Q Consensus 814 ~~~~~~~ 820 (947)
|.+..++
T Consensus 672 G~Ig~gt 678 (963)
T 4ady_A 672 SMILIQQ 678 (963)
T ss_dssp HHHSTTC
T ss_pred HHHhcCC
Confidence 9876653
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=59.48 E-value=64 Score=32.28 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=79.2
Q ss_pred HHHHhhcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc------
Q 002253 661 INQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW------ 725 (947)
Q Consensus 661 ~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~------ 725 (947)
.-++-++.+...|..|+.+|......+.. +...|.+.|.++ -..||..|+.+|+.++......
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (252)
T 4db8_A 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID 136 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 44555677888899999988875432211 456788888775 4799999999999987543221
Q ss_pred -ccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCCh-----HHHHHHHHHHhhhcCCCCCC
Q 002253 726 -AGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSP-----REAVEFVLQLLKYNDNNGNP 799 (947)
Q Consensus 726 -~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p-----~~v~~fll~ll~~NdNs~N~ 799 (947)
.|++.|+++.+.. +.-+++....+|+.+=..+...- ..+...|+++|+..
T Consensus 137 ~~~i~~L~~lL~~~------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------ 192 (252)
T 4db8_A 137 AGALPALVQLLSSP------------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------ 192 (252)
T ss_dssp TTHHHHHHHGGGCS------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS------
T ss_pred CCCHHHHHHHHhCC------------------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC------
Confidence 3566776665420 12467777777776642210000 12345667777621
Q ss_pred CchHHHHHHHHHHhhccc
Q 002253 800 YSDVFWLAALVQSVGELE 817 (947)
Q Consensus 800 ysD~~y~a~li~al~~~~ 817 (947)
|.--+...+.+|+++.
T Consensus 193 --~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 193 --NEQILQEALWALSNIA 208 (252)
T ss_dssp --SHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 4455666667777654
No 47
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=54.68 E-value=78 Score=38.58 Aligned_cols=61 Identities=21% Similarity=0.165 Sum_probs=45.7
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHcCCCCc--------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002253 658 QMWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s--------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
..++.++-++.+-..|..|+.+|....... ..+...|.+.+.|+ -..||..|+.+|++++.
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHH
Confidence 445556667889999999999999764322 12455677788775 68999999999998875
No 48
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=54.35 E-value=74 Score=33.73 Aligned_cols=104 Identities=8% Similarity=0.094 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCccEE-EeCC--CCcccccccccchhhccc--ccccCccccchhhHHHHHHHH
Q 002253 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (947)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V-~vp~--~~~~~~~~~gagl~~~~~--~lL~~~~~~d~~~~~~~~laH 351 (947)
.+..+.-.+.++.+||.++|| .-|+.. .++ .|-. ...++ .|-+.-.+|.+ ...++ .....+++|
T Consensus 72 ~~~DAhy~a~~~~d~y~~~~g-r~~id~-~l~~~Vhyg~~y~NA--fWdG~~M~fGDG~~~~~p-------~~~lDVv~H 140 (301)
T 1u4g_A 72 PLNDAHFFGGVVFKLYRDWFG-TSPLTH-KLYMKVHYGRSVENA--YWDGTAMLFGDGATMFYP-------LVSLDVAAH 140 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSSS-CEEEEESCTTTCCCE--EECSSCEEECCCCSSBSC-------SCCHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHHHcC-CCCCCC-ceEEEEecCCCccCc--EecCcEEEeeCCCccccc-------ccccceeee
Confidence 345666778899999999998 567763 333 2321 11111 12111122321 11111 113458999
Q ss_pred HHHHhhhccccCCCCCChh-HHHHHHHHHHHHHHHHHHhCC
Q 002253 352 ALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLGN 391 (947)
Q Consensus 352 ELAHQWFG~lVt~~~w~d~-WL~EGfA~Y~~~~~~~~~~G~ 391 (947)
|++|--.-..-.+....+. =|||||+..+...+-....|.
T Consensus 141 E~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ve~~~~~~ 181 (301)
T 1u4g_A 141 EVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEAAEFYMRGK 181 (301)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccceeccccCccccCCccchhHHHHHHHHHHHHHHhcCC
Confidence 9999987776554444444 499999999987754444443
No 49
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=51.87 E-value=90 Score=33.69 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEE-EeCC--CCcccccccccchhhccc--ccccCccccchhhHHHHH
Q 002253 276 SKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLAP--EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (947)
Q Consensus 276 ~~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~V-~vp~--~~~~~~~~~gagl~~~~~--~lL~~~~~~d~~~~~~~~ 348 (947)
..+..+...+....+||.+.|| .=++.. ..++ .|-. ...++ .|-+.-.+|.+ ...+.+- .....+
T Consensus 88 ~av~~ay~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA--fWdG~~M~fGDG~g~~f~~~-----~~~lDV 159 (341)
T 2vqx_A 88 VAVDEAYDYLGVTYDFFWQAFK-RNSLDNQGLPLTGSVHYGKEYQNA--FWNGQQMVFGDGDGEIFNRF-----TIAIDV 159 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEESCSSSCCCE--EECSSCEEECCCCSSSBCCT-----TSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEecCCCccCc--eecCcEeEeeCCCCcccCCc-----ccchhh
Confidence 3455566677889999999999 445532 3333 3321 11111 12111122321 1111111 112458
Q ss_pred HHHHHHHhhhccccCCCCCChh-HHHHHHHHHHHHHHHHHHhC
Q 002253 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFIKKFLG 390 (947)
Q Consensus 349 laHELAHQWFG~lVt~~~w~d~-WL~EGfA~Y~~~~~~~~~~G 390 (947)
++||++|--.-..-....-.+. =|||||+.++...+-....+
T Consensus 160 v~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~ve~~~~~ 202 (341)
T 2vqx_A 160 VGHALAHGVTESEAGLIYFQQAGALNESLSDVFGSLVKQFHLK 202 (341)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcccceecccCCccccCCCcchhhHHHHHHHHHHHHHhcC
Confidence 9999999877655444433333 49999999998766544444
No 50
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=49.61 E-value=1.9e+02 Score=33.76 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=107.6
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHcCCCCc--------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------
Q 002253 658 QMWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------ 723 (947)
Q Consensus 658 ~m~~~QL~~drdv~aq~eAi~~l~~~~~~s--------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------ 723 (947)
-..+..|..+.|...|..|+..|....... ......|.+.|.+. --.||..|+.+|.+++....
T Consensus 59 ~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v 136 (644)
T 2z6h_A 59 SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAV 136 (644)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 345666766678889999998887542211 11455688888765 37899999999999875321
Q ss_pred -ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC-----ChHHHHHHHHHHhhhcCCCC
Q 002253 724 -DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNG 797 (947)
Q Consensus 724 -~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~-----~p~~v~~fll~ll~~NdNs~ 797 (947)
.-.+++.|+++.++ +| - -++.+...+|+.+=..+.. .-..+...|+++|+-.+
T Consensus 137 ~~~g~i~~Lv~lL~~-----------~~----~---~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--- 195 (644)
T 2z6h_A 137 RLAGGLQKMVALLNK-----------TN----V---KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--- 195 (644)
T ss_dssp HHTTHHHHHHHGGGC-----------CC----H---HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC---
T ss_pred HHCCChHHHHHHHCc-----------CC----H---HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC---
Confidence 23457777776653 11 1 2444443444433211100 01135678888887332
Q ss_pred CCCchHHHHHHHHHHhhccccccccHHH-HH-HHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCc----h
Q 002253 798 NPYSDVFWLAALVQSVGELEFGQQSILF-LS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS----L 871 (947)
Q Consensus 798 N~ysD~~y~a~li~al~~~~~~~~~~~~-~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~----~ 871 (947)
+.--+...+.+|.++..+...... .+ .++..+-+++.- -..-+...|+.+|.+|+........ +
T Consensus 196 ----~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~------~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i 265 (644)
T 2z6h_A 196 ----YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD------PSQRLVQNCLWTLRNLSDAATKQEGMEGLL 265 (644)
T ss_dssp ----CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC------SCHHHHHHHHHHHHHHGGGCTTCCSCHHHH
T ss_pred ----hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhc------CCHHHHHHHHHHHHHHhhcchhhhhhhhHH
Confidence 122233444555554433222211 11 134444443332 1233445566777776421100000 1
Q ss_pred hhhhhhhcccCCCCchHHHHHHHHHHhhcccc
Q 002253 872 DQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (947)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (947)
..+..++. ..-..||..|..+|..|..
T Consensus 266 ~~Lv~lL~-----~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 266 GTLVQLLG-----SDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHTT-----CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-----CCCHHHHHHHHHHHHHHHc
Confidence 11223322 1236789999998887754
No 51
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=49.27 E-value=20 Score=31.80 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhcc
Q 002253 345 TSIKLSFALARQWFGV 360 (947)
Q Consensus 345 ~~~~laHELAHQWFG~ 360 (947)
...++|||++|-=-++
T Consensus 83 l~aVlaHElgH~~~~h 98 (107)
T 3cqb_A 83 AEAVLAHEVSHIANGD 98 (107)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 3458999999975444
No 52
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=49.08 E-value=84 Score=34.22 Aligned_cols=61 Identities=8% Similarity=0.088 Sum_probs=25.3
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHhcCCC--chhhhhhhhcccCCCCchHHHHHHHHHHhhccccccc
Q 002253 841 RLMPSYNGILTISCIRTLTQIALKLSGFI--SLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCN 906 (947)
Q Consensus 841 ~~~psy~~~vt~~~l~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~ 906 (947)
.++-+-++.|-..|.++++.+...-.+.+ ....+ .+|..=.+ ..+|.+|++-|-.+.....
T Consensus 257 ~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L-~~fLss~d----~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 257 SCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVL-QLFCSSPK----AALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp CCCCCSSHHHHHHHHHHHTC-----------CCCTH-HHHHHSSS----SSSHHHHHHCC--------
T ss_pred HHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHH-HHHHcCCC----chHHHHHHHHHHHHHHHCc
Confidence 33445667777888888877632001111 01112 12222112 3688888888888764333
No 53
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=48.83 E-value=86 Score=33.24 Aligned_cols=98 Identities=5% Similarity=0.033 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEE-EeC-C------CCcccccccccchhhccc--ccccCccccchhhHH
Q 002253 278 IHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLA-P------EMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDT 345 (947)
Q Consensus 278 ~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~V-~vp-~------~~~~~~~~~gagl~~~~~--~lL~~~~~~d~~~~~ 345 (947)
+..+...+..+.+||.+.|| .=++.- ..++ .|- + ...++ .|-....+|.+ ...+. +....
T Consensus 67 avdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~Vhyg~~~~~~~y~NA--fWdg~~m~fGdGdg~~f~-----~~~~~ 138 (301)
T 1bqb_A 67 GVDANYYAKQTYDYYKNTFG-RESYDNHGSPIVSLTHVNHYGGQDNRNNA--AWIGDKMIYGDGDGRTFT-----NLSGA 138 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSTTSSCCCEEEEECCCEETTEECTTCE--EECSSSEEECCCCSSSBS-----CGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeeEEEEEeCCCCCCCCccCc--EEcCCEEEEEcCCCcccC-----Ccccc
Confidence 34566778899999999999 556642 3332 232 1 01111 12111222221 11111 11123
Q ss_pred HHHHHHHHHHhhhccccCCCCCChh-HHHHHHHHHHHHH
Q 002253 346 SIKLSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDS 383 (947)
Q Consensus 346 ~~~laHELAHQWFG~lVt~~~w~d~-WL~EGfA~Y~~~~ 383 (947)
..+++||++|--.-....+..-.+. =|||||+.++...
T Consensus 139 lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 139 NDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 4689999999877665444433333 4899999999864
No 54
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=46.08 E-value=32 Score=35.17 Aligned_cols=122 Identities=14% Similarity=0.084 Sum_probs=66.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCchhHHhHHHh-hhccCcchhHHHHHHHHHHHhhcc-ccc--------cccc--
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNN-FLSDSKAFWRVRIEAAYALANTAS-EET--------DWAG-- 727 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~~~~~L~~-~l~d~~~f~~VR~~Aa~aL~~~~~-~~~--------~~~g-- 727 (947)
....|-++.--.+|+-|+..|.+.+ ....+-..+.. +..|+ -||||-.+|.++..... ... .|..
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~~-~~~~~L~~ir~~va~D~--~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~ 151 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYLS-KDKEILIFMRDEVSKDN--NWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSS 151 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHTT-TSHHHHHHHHHTGGGCS--CHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCS
T ss_pred HHHHHHhCcchHHHHHHHHHHHhcc-CcHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 4445555565599999999998763 33334444554 34443 57999999999998653 211 1211
Q ss_pred HHHHHHHHHh---cCCCCC--CC-----CC-CCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHH
Q 002253 728 LLHLVKFYKS---RRFDEN--IG-----LP-RPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQ 788 (947)
Q Consensus 728 ~~~L~~~f~~---~~~~~~--~~-----~p-~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ 788 (947)
=.++.++=-+ -+|... .. +| ..|.- +=.+.||||||-.+| ||-.-.-|.-|++|+-.
T Consensus 152 n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~-~D~s~yVrKSVan~L---rD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 152 NLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLK-EDVSEYVRKSVGNAL---RDISKKFPDLVKIELKN 219 (240)
T ss_dssp SHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTT-TCSCHHHHHHHHHHH---HHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhc-CChHHHHHHHHHHHH---HHHhhhCHHHHHHHHHH
Confidence 0112111111 111100 00 00 01112 223567999998777 66555568888888754
No 55
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=44.22 E-value=2.1e+02 Score=34.30 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=75.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCch---------hHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccc----cc
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLSF---------NVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETD----WA 726 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~---------~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~----~~ 726 (947)
.+.++-.+.+...|..|+.+|+....... .+...|.+.+.|+ -..||..|+.+|++++..-.. ..
T Consensus 373 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHGGGSCTTT
T ss_pred HHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 44455567888888889988886543211 1344566777775 688999999999987743111 11
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCC--------CChHHHHHHHHHHhhhcCCCCC
Q 002253 727 GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN--------KSPREAVEFVLQLLKYNDNNGN 798 (947)
Q Consensus 727 g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~--------~~p~~v~~fll~ll~~NdNs~N 798 (947)
-+..++...-+..-+ . | -++.+...|++.+-..-+ .--+.+...|+.+|+..|+
T Consensus 451 ~~~~~l~~l~~~l~~---~-~-----------~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~--- 512 (861)
T 2bpt_A 451 HLPGVVQACLIGLQD---H-P-----------KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN--- 512 (861)
T ss_dssp THHHHHHHHHHHHTS---C-H-----------HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC---
T ss_pred HHHHHHHHHHHHhcc---C-h-----------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCc---
Confidence 133333332221101 1 1 256665566654322111 1235677788888874332
Q ss_pred CCchHHHHHHHHHHhhcc
Q 002253 799 PYSDVFWLAALVQSVGEL 816 (947)
Q Consensus 799 ~ysD~~y~a~li~al~~~ 816 (947)
|.-.+.+++++|+.+
T Consensus 513 ---~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 513 ---EFNARASAFSALTTM 527 (861)
T ss_dssp ---GGGHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHH
Confidence 223677777777765
No 56
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=42.83 E-value=3.9e+02 Score=29.65 Aligned_cols=207 Identities=14% Similarity=0.127 Sum_probs=107.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCCCc--------hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-------
Q 002253 659 MWINQLEKDGDVVAQAQAIAALEALPHLS--------FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------- 723 (947)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~~s--------~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------- 723 (947)
..+..|+.+.|...|..|+.+|....... ......|.+.|.++. -.||..|+.+|.+.+....
T Consensus 63 ~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~ 140 (529)
T 1jdh_A 63 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPV--DSVLFYAITTLHNLLLHQEGAKMAVR 140 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34445666668888999998888643211 014456788887753 7899999999999875421
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC-----ChHHHHHHHHHHhhhcCCCCC
Q 002253 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK-----SPREAVEFVLQLLKYNDNNGN 798 (947)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~-----~p~~v~~fll~ll~~NdNs~N 798 (947)
...+++.|+++.++ + | --++.....+++.+--.+.. .-..+...|+++|+..+
T Consensus 141 ~~g~i~~L~~ll~~----~-------~-------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~---- 198 (529)
T 1jdh_A 141 LAGGLQKMVALLNK----T-------N-------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT---- 198 (529)
T ss_dssp HHTHHHHHHHGGGC----C-------C-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC----
T ss_pred HcCCHHHHHHHHhc----C-------C-------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 23457777776653 1 1 12444444455433211100 11135677888887543
Q ss_pred CCchHHHHHHHHHHhhccccccccHHH-H-HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCc----hh
Q 002253 799 PYSDVFWLAALVQSVGELEFGQQSILF-L-SSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS----LD 872 (947)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~~~~~~~-~-~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~----~~ 872 (947)
+.--+.+...+|.++..+...... . ..++..+-+++. +...-+-..|+.+|..|......... +.
T Consensus 199 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~ 269 (529)
T 1jdh_A 199 ---YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT------DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 269 (529)
T ss_dssp ---CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTT------SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHH
T ss_pred ---hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh------CCChHHHHHHHHHHHHHhcCChhhHHHHhHHH
Confidence 222333444455544433222111 1 124444444432 11233444566777776421100000 01
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHhhcccc
Q 002253 873 QVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (947)
Q Consensus 873 ~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (947)
.+..++ . ..-..||..|..+|-.+..
T Consensus 270 ~L~~ll----~-~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 270 TLVQLL----G-SDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHT----T-CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHH----c-CCCHHHHHHHHHHHHHHhc
Confidence 122332 1 2336889999999888754
No 57
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=42.79 E-value=51 Score=37.68 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=34.7
Q ss_pred hcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002253 666 KDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
.+.+...|.+|..+|......+.. +...|.+.+.+. =..||.+||.+|+..+.
T Consensus 326 ~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc
Confidence 455666777777777754322211 334567777665 46899999999998764
No 58
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=42.39 E-value=98 Score=32.20 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCCchhhh---hhhhcccCCCCchHHHHHHHHHHhhccccc
Q 002253 852 ISCIRTLTQIALKLSGFISLDQV---VKLIKPFRDFNTIWQVRVEASRALLDLEFH 904 (947)
Q Consensus 852 ~~~l~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~ 904 (947)
.+||..+..+- ...|.-|...+ ..+-.-+.+.+ ..||-+|+.|++.++.+
T Consensus 185 ~e~l~~l~~li-~~~G~~~~~~l~~~~~ia~ll~D~d--~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 185 SECLLVIEYYI-TNAGISPLKSLSVEKTVAPFVGDKD--VNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHH-HHHCSGGGGGGCHHHHHGGGGGCSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCccccccchHHHHHHHcCCC--HHHHHHHHHHHHHHHHH
Confidence 58998888874 34565554332 22222233322 58999999999998753
No 59
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=41.41 E-value=1.4e+02 Score=31.70 Aligned_cols=102 Identities=3% Similarity=0.006 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEE-EeC--CCCcccccccccchhhccc--ccccCccccchhhHHHHH
Q 002253 276 SKIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV-FLA--PEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIK 348 (947)
Q Consensus 276 ~~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~V-~vp--~~~~~~~~~~gagl~~~~~--~lL~~~~~~d~~~~~~~~ 348 (947)
..+..+...+....+||.+.|| .=++.- ..++ .|- ....++ .|-....+|.+ ...+.+ ......+
T Consensus 68 ~aavdA~~~~~~t~d~y~~~~g-r~sid~~G~~l~~~VHyg~~y~NA--fW~g~~m~fGDGdg~~f~~-----~~~slDV 139 (316)
T 3dnz_A 68 APAVDAHYYAGVTYDYYKNVHN-RLSYDGNNAAIRSSVHYSQGYNNA--FWNGSQMVYGDGDGQTFIP-----LSGGIDV 139 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEESCTTTCCCE--EECSSCEEECCCCSSSBSC-----GGGCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCceEEEEEecCCCccCc--eEcCCEEEEeCCCCccccc-----ccccccc
Confidence 3456677888999999999999 557641 3333 232 111122 12112223322 112221 1123458
Q ss_pred HHHHHHHhhhccccCCCCCChh-HHHHHHHHHHHHHHH
Q 002253 349 LSFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (947)
Q Consensus 349 laHELAHQWFG~lVt~~~w~d~-WL~EGfA~Y~~~~~~ 385 (947)
++||+.|--.-..-....-.+. =|||+|+..+...+-
T Consensus 140 v~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ve 177 (316)
T 3dnz_A 140 VAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVE 177 (316)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCCCcccCCccchhHHHHHHHHHHHH
Confidence 9999999876654333322222 499999999986654
No 60
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=40.96 E-value=1.3e+02 Score=31.87 Aligned_cols=101 Identities=4% Similarity=0.025 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccEE---EeCCCCcccccccccchhhccc--ccccCccccchhhHHHHHH
Q 002253 277 KIHNTVEFFHNAFSHYETYLDAKFPFGS--YKQV---FLAPEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKL 349 (947)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k--~~~V---~vp~~~~~~~~~~gagl~~~~~--~lL~~~~~~d~~~~~~~~l 349 (947)
.+..+...+.+..+||.+.|| .=++.- ..++ -......++ .|-....+|.+ ...+.+ ......++
T Consensus 62 aavdA~~~~~~t~d~y~~~~g-rnsid~~G~~l~~~VHyg~~y~NA--fW~g~~m~fGDGdg~~f~~-----~~~slDVv 133 (304)
T 4ger_A 62 AGVDAHTYAAKTYDYYKAKFG-RNSIDGRGLQLRSTVHYGSRYNNA--FWNGSQMTYGDGDGSTFIA-----FSGDPDVV 133 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCTTTSSCCCEEEEEEESSSCCCE--EECSSCEEEECCCSSSBCC-----GGGSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCeEEEEEeCCCCccCc--eecCCEEEEeCCCCccccc-----cccccchh
Confidence 455677788899999999999 556642 3332 122221222 12112233322 112211 11234589
Q ss_pred HHHHHHhhhccccCCCCCChh-HHHHHHHHHHHHHHH
Q 002253 350 SFALARQWFGVYITPELPNDE-WLLDGLAGFLTDSFI 385 (947)
Q Consensus 350 aHELAHQWFG~lVt~~~w~d~-WL~EGfA~Y~~~~~~ 385 (947)
+|||.|--.-..-....-.+. =|||+|+..+...+-
T Consensus 134 aHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~ve 170 (304)
T 4ger_A 134 GHELTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQ 170 (304)
T ss_dssp HHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccCCccccCCccchhHHHHHHHHHHhc
Confidence 999999865544322222222 389999999977654
No 61
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=40.80 E-value=4e+02 Score=29.57 Aligned_cols=70 Identities=14% Similarity=0.012 Sum_probs=46.1
Q ss_pred hcCChHHHHHHHHHHHcCC----CC-----chhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccc-------cccccHH
Q 002253 666 KDGDVVAQAQAIAALEALP----HL-----SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEE-------TDWAGLL 729 (947)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~----~~-----s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~-------~~~~g~~ 729 (947)
.+.|-..|.+|+.+|.... .. ...+...|.+.|.+. -.++|..|+.+|...+... ..-.|++
T Consensus 111 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~ 188 (529)
T 1jdh_A 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 4566677888888877541 11 112455677888764 5899999999998776421 1235678
Q ss_pred HHHHHHHh
Q 002253 730 HLVKFYKS 737 (947)
Q Consensus 730 ~L~~~f~~ 737 (947)
.|+++.+.
T Consensus 189 ~L~~ll~~ 196 (529)
T 1jdh_A 189 ALVNIMRT 196 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777765
No 62
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=39.54 E-value=68 Score=36.57 Aligned_cols=15 Identities=27% Similarity=0.662 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHhhc
Q 002253 705 WRVRIEAAYALANTA 719 (947)
Q Consensus 705 ~~VR~~Aa~aL~~~~ 719 (947)
..||.+|+.+|+.++
T Consensus 397 ~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 397 YKTKKEACWAISNAS 411 (530)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555444
No 63
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=38.77 E-value=1.6e+02 Score=28.97 Aligned_cols=56 Identities=34% Similarity=0.283 Sum_probs=37.4
Q ss_pred HHhhcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002253 663 QLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 663 QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
++-.+.|...|..|+.+|......+.. +...|.+.+.+.. ..||..|+.+|+.++.
T Consensus 135 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 135 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIAS 199 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCC--HHHHHHHHHHHHHHHc
Confidence 444567777788888777764322211 4456777777643 5889999999888775
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=38.01 E-value=43 Score=32.55 Aligned_cols=59 Identities=25% Similarity=0.188 Sum_probs=43.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
.+-++-++.|...|..|+.+|......+.. ....|.+.|.+. -..||..|+.+|+.++.
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc
Confidence 444555677889999999999865422211 345677888776 47999999999999874
No 65
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=37.37 E-value=62 Score=37.08 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=37.0
Q ss_pred HHHhhcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002253 662 NQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 662 ~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
.+|..+.+...|.+|+.+|.....++.. +...|.+.|.+. -..||.+||.+|+..+.
T Consensus 341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHc
Confidence 3455667777888888877754222211 233466667664 46899999999987764
No 66
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=36.58 E-value=75 Score=36.10 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHhhc
Q 002253 705 WRVRIEAAYALANTA 719 (947)
Q Consensus 705 ~~VR~~Aa~aL~~~~ 719 (947)
..||.+|+.+|+.++
T Consensus 385 ~~v~~~a~~aL~nl~ 399 (528)
T 4b8j_A 385 FDIKKEAAWAISNAT 399 (528)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=36.43 E-value=8.9 Score=45.13 Aligned_cols=206 Identities=18% Similarity=0.264 Sum_probs=109.0
Q ss_pred ceeeEeeccCch--hHHHHHHhhcCChHHHHHHHHHHHcC----CC-------CchhHHhHHHhhhccCcchhHHHHHHH
Q 002253 646 EYLAEIHFNQPV--QMWINQLEKDGDVVAQAQAIAALEAL----PH-------LSFNVVNTLNNFLSDSKAFWRVRIEAA 712 (947)
Q Consensus 646 e~l~~v~~~qp~--~m~~~QL~~drdv~aq~eAi~~l~~~----~~-------~s~~~~~~L~~~l~d~~~f~~VR~~Aa 712 (947)
.|++++-+..++ -..+. |-++.|...++-|++.|... |. .....+..|...|.|+| =-||.||+
T Consensus 111 ~~~~d~f~~~~~~i~~Ll~-lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r--E~iRneal 187 (651)
T 3grl_A 111 SQFTEIFIKQQENVTLLLS-LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR--EVIRNDGV 187 (651)
T ss_dssp HHHHHHHHHSTHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS--HHHHHHHH
T ss_pred HHHHHHHHcCCccHHHHHH-HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch--HHHHHHHH
Confidence 455555444432 22333 34678999998888777632 10 01124567888898875 57999999
Q ss_pred HHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCC----CChHHHHHHHHH
Q 002253 713 YALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADN----KSPREAVEFVLQ 788 (947)
Q Consensus 713 ~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~----~~p~~v~~fll~ 788 (947)
..|........+ ++.++ +| .-|+++-++.|+.+.| ..-.++...|.+
T Consensus 188 lLL~~Lt~~n~~---iQklV-AF-------------------------EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 188 LLLQALTRSNGA---IQKIV-AF-------------------------ENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHHHTTCHH---HHHHH-HH-------------------------TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHH---HHHHH-HH-------------------------hccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 999988764321 11111 11 0244555556665543 556778889999
Q ss_pred HhhhcCCCCCCCchHHHHHHHHHHhhcccccccc----HHHHHH--HHHHHHHHHhccccccCCCch--hHHHHHHHHHH
Q 002253 789 LLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQS----ILFLSS--LLKRIDRLLQFDRLMPSYNGI--LTISCIRTLTQ 860 (947)
Q Consensus 789 ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~----~~~~~~--~~~ei~r~~~~d~~~psy~~~--vt~~~l~~~~~ 860 (947)
||++|--+.|.|-..-|+..|+.=|. .+.+. ..-+.. ..-+|-|.+-. | .+. -|..|.+++.+
T Consensus 239 LLr~N~sNQ~~FrEt~~i~~L~~LL~---~~~~~~~W~~Qk~~N~~~~L~iIrlLv~----~--~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 239 LLKNNNSNQNFFKEGSYIQRMKPWFE---VGDENSGWSAQKVTNLHLMLQLVRVLVS----P--NNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHTTCHHHHHHHHHTTCGGGGGGGGC---CCSCSSCCCHHHHHHHHHHHHHHHHHTC----T--TSCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHcCCHHHHHHHhC---CCccccccHHHHHHHHHHHHHHHHHHhC----C--CCCCCCCHHHHHHHHH
Confidence 99986444444544444444432221 11110 001111 22344444322 2 222 35556665554
Q ss_pred HHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhccc
Q 002253 861 IALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLE 902 (947)
Q Consensus 861 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~ 902 (947)
+|.+. .++++.. ..+.+..||..|+.++=++.
T Consensus 310 -----~g~l~--~Ll~ll~---~~~~p~~i~~~Al~tla~~i 341 (651)
T 3grl_A 310 -----CGLLQ--QLCTILM---ATGVPADILTETINTVSEVI 341 (651)
T ss_dssp -----TTHHH--HHHHHHT---CSSCCHHHHHHHHHHHHHHH
T ss_pred -----CCCHH--HHHHHHc---cCCCCHHHHHHHHHHHHHHH
Confidence 23222 1333322 13456788888888887753
No 68
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=36.25 E-value=3.1e+02 Score=33.10 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=73.0
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccc--cHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 002253 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWA--GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHA 767 (947)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~--g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a 767 (947)
+...|...+.++ -|++|..|+.+|+.++..-.... -+..++.......-++ +-.|+++...+
T Consensus 360 l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--------------~~~Vr~~a~~~ 423 (852)
T 4fdd_A 360 ILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--------------KALVRSITCWT 423 (852)
T ss_dssp HHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--------------SHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--------------CHHHHHHHHHH
Confidence 455666677665 59999999999999875321111 1233444444322222 12488888888
Q ss_pred Hhhcccc-----CCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHHHHHh
Q 002253 768 VAMVRAA-----DNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF--GQQSILFLSSLLKRIDRLLQ 838 (947)
Q Consensus 768 ~a~~r~~-----~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~--~~~~~~~~~~~~~ei~r~~~ 838 (947)
++.+-.. ....-..+...|++.|+- + +.-.+.+...||+++.- +..-..++..++..+-..++
T Consensus 424 l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d--~------~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 424 LSRYAHWVVSQPPDTYLKPLMTELLKRILD--S------NKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS 493 (852)
T ss_dssp HHHTHHHHHHSCTTTTHHHHHHHHHHHHTC--S------SHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhC--C------CHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHH
Confidence 8765432 223456788888888862 1 34577777778876421 11112355666666666554
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=34.07 E-value=1.8e+02 Score=36.96 Aligned_cols=213 Identities=15% Similarity=0.136 Sum_probs=104.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCC-Cc----hhHHhHHHhhhccCcchhHHHHHHHHHHHhhccccccc------c--
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPH-LS----FNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDW------A-- 726 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~-~s----~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~------~-- 726 (947)
....| .|++...|..|+..|...-. .+ ..+...|...+.|+.. .||..|+.+|+.++...... .
T Consensus 53 Ll~~L-~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~~~~~~~~~ 129 (1230)
T 1u6g_C 53 ILKLL-EDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPASSGSALAAN 129 (1230)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcccccchHHH
Confidence 33444 48999999999988875311 11 1245567777777654 78999999999887542211 0
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCC----ChHHHHHHHHHHhhhcCCCCCCCch
Q 002253 727 GLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNK----SPREAVEFVLQLLKYNDNNGNPYSD 802 (947)
Q Consensus 727 g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~----~p~~v~~fll~ll~~NdNs~N~ysD 802 (947)
-...++....+..-+ + +| .-++.+-..+++.+=...|. .-+++...|+..|.. .+
T Consensus 130 ~~~~llp~L~~~l~~--~----~~-------~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~--------~~ 188 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAK--Q----ED-------VSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS--------PR 188 (1230)
T ss_dssp HHHHHHHHHHHHHSC--C----SC-------HHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC--------SS
T ss_pred HHHHHHHHHHHHHcC--C----Cc-------hHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC--------Cc
Confidence 122233222221100 0 11 13555555555554322222 235566667777641 12
Q ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHH-HHhcCCCchhhhhhhhccc
Q 002253 803 VFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA-LKLSGFISLDQVVKLIKPF 881 (947)
Q Consensus 803 ~~y~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~-~~~~~~~~~~~~~~~~~~~ 881 (947)
...+...+.||+.+...... .+...++..+-..+.-+.. ++-+.. .+.|+-.+.+.. ..+..++ +.+..++...
T Consensus 189 ~~vR~~a~~al~~l~~~~~~-~~~~~~l~~l~~~L~~~~~-~~~r~~-a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~ 263 (1230)
T 1u6g_C 189 LAVRKRTIIALGHLVMSCGN-IVFVDLIEHLLSELSKNDS-MSTTRT-YIQCIAAISRQAGHRIGEYL--EKIIPLVVKF 263 (1230)
T ss_dssp HHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCS-SCSCTT-HHHHHHHHHHHSSGGGTTSC--TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhccCCc-hhHHHH-HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHH
Confidence 46788888888876432211 2233445555555544432 222211 234444443320 0111111 2222222222
Q ss_pred CCCCchHHHHHHHHHHhhccc
Q 002253 882 RDFNTIWQVRVEASRALLDLE 902 (947)
Q Consensus 882 ~~~~~~~~vr~~a~~~l~~~~ 902 (947)
.. +.-..||..|+++|-.+.
T Consensus 264 l~-d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 264 CN-VDDDELREYCIQAFESFV 283 (1230)
T ss_dssp HS-SCCTTTHHHHHHHHHHHH
T ss_pred hc-CCCHHHHHHHHHHHHHHH
Confidence 22 223578998888877664
No 70
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=31.57 E-value=19 Score=22.22 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=10.7
Q ss_pred hhhhhHHHHHhhc
Q 002253 934 YEDMSDKRWIRFQ 946 (947)
Q Consensus 934 ~~~~~~~~~~~~~ 946 (947)
.+.|+|++|...|
T Consensus 11 qdylsdhlwraln 23 (26)
T 2xl1_A 11 QDYLSDHLWRALN 23 (26)
T ss_pred HHHHHHHHHHHHh
Confidence 4689999998776
No 71
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=31.25 E-value=3.6e+02 Score=29.13 Aligned_cols=213 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred hcCChHHHHHHHHHHHcCCCC-chhHHhHHHhhhccCcchhHHHHHHHHHHHhhc--------------ccccccccHHH
Q 002253 666 KDGDVVAQAQAIAALEALPHL-SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA--------------SEETDWAGLLH 730 (947)
Q Consensus 666 ~drdv~aq~eAi~~l~~~~~~-s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~--------------~~~~~~~g~~~ 730 (947)
.++|-..|.+|-+.|.+.... ...+...|...+.+...-..||..||..|.+.- .....-.-...
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (462)
T 1ibr_B 11 VSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARRE 90 (462)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHH
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHH
Q 002253 731 LVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALV 810 (947)
Q Consensus 731 L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li 810 (947)
+....-.....++..+ + --..+...|+..-..++.. +++..+|++.+.-.. +|...+...+
T Consensus 91 ik~~ll~~l~~~~~~v-~-----------~~~~~i~~ia~~~~~~~~w-~~ll~~L~~~l~~~~------~~~~~r~~al 151 (462)
T 1ibr_B 91 VKNYVLQTLGTETYRP-S-----------SASQCVAGIACAEIPVNQW-PELIPQLVANVTNPN------STEHMKESTL 151 (462)
T ss_dssp HHHHHHHHTTCCCSSS-C-----------SHHHHHHHHHHHHGGGTCC-TTHHHHHHHHHHCTT------CCHHHHHHHH
T ss_pred HHHHHHHHhCCCCchh-h-----------HHHHHHHHHHHHhcccccc-HHHHHHHHHHhccCC------CCHHHHHHHH
Q ss_pred HHhhcccc---ccccHHHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHhcCCCc----hhhhhhhhcccCC
Q 002253 811 QSVGELEF---GQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFIS----LDQVVKLIKPFRD 883 (947)
Q Consensus 811 ~al~~~~~---~~~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~~~~~~~~----~~~~~~~~~~~~~ 883 (947)
.+|+.+.- +..-..+...++..+..++.-++ -..-|-.++++++..+........+ .+.+...+.....
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE----PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC----CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Q ss_pred CCchHHHHHHHHHHhhccc
Q 002253 884 FNTIWQVRVEASRALLDLE 902 (947)
Q Consensus 884 ~~~~~~vr~~a~~~l~~~~ 902 (947)
.... .||.+|++||..+.
T Consensus 228 ~~~~-~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 228 CPDT-RVRVAALQNLVKIM 245 (462)
T ss_dssp CSSH-HHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHHH
No 72
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=31.17 E-value=2.3e+02 Score=34.23 Aligned_cols=106 Identities=12% Similarity=0.104 Sum_probs=61.8
Q ss_pred HhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhh
Q 002253 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAM 770 (947)
Q Consensus 691 ~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~ 770 (947)
+..|.+.+.+. --.++..|+.+|..++.......+...++..+-+..-. . +--+++....+|+.
T Consensus 362 l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~--------~------d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 362 MQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS--------D------DINVVTCAAGILSN 425 (780)
T ss_dssp HHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC--------S------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC--------C------CHHHHHHHHHHHHH
Confidence 45677777665 35789999999998875544444444444444332211 1 12377777788887
Q ss_pred ccccCCCCh-----HHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc
Q 002253 771 VRAADNKSP-----REAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF 818 (947)
Q Consensus 771 ~r~~~~~~p-----~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~ 818 (947)
+-..+...- ..+...|+++|...++. .-.+...+.+|+++..
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~------~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDR------EDITEPAICALRHLTS 472 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTTS
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCH------HHHHHHHHHHHHHHHh
Confidence 743210000 13567888888753221 1366677788888754
No 73
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=30.58 E-value=1.9e+02 Score=34.94 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=91.2
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc------ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHH
Q 002253 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEA 763 (947)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~ 763 (947)
++..|...+..+ .-.+|..|+.+|..++.... ...|++.|+.+..+.- +. ++ -++..
T Consensus 458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~-------~~----~~----~~k~~ 520 (778)
T 3opb_A 458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQ-------DI----GE----PIRIL 520 (778)
T ss_dssp HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC--------------CC----HHHHH
T ss_pred CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-------Cc----ch----HHHHH
Confidence 566777666553 67899999999999875432 3356788988876521 00 11 24555
Q ss_pred HHHHHhhcc-cc------CCCChHHHHHHHHHHhhhcCCCCC-CCchH-----HHHHHHHHHhhcccccccc--HHHHHH
Q 002253 764 IPHAVAMVR-AA------DNKSPREAVEFVLQLLKYNDNNGN-PYSDV-----FWLAALVQSVGELEFGQQS--ILFLSS 828 (947)
Q Consensus 764 i~~a~a~~r-~~------~~~~p~~v~~fll~ll~~NdNs~N-~ysD~-----~y~a~li~al~~~~~~~~~--~~~~~~ 828 (947)
-..||+++= .. .|..+.++.++|++||.....+.+ +-++. -=....+.||+|+.....+ ...-.+
T Consensus 521 AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 521 GCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 566777653 22 254556999999999985333322 21111 1134556688877553321 112233
Q ss_pred HHHHHHHHHhccccccCCCchhHHHHHHHHHHHHH
Q 002253 829 LLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIAL 863 (947)
Q Consensus 829 ~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~~ 863 (947)
++.+-.-+-.++.++=|-+..|..++.++++.|..
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 44431122333444556666888899999999863
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=29.41 E-value=4.5e+02 Score=26.42 Aligned_cols=178 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHc-C----------CCCchhHHhHHHhhh-ccCcchhHHHHHHHHHHHhhccccccccc
Q 002253 660 WINQLEKDGDVVAQAQAIAALEA-L----------PHLSFNVVNTLNNFL-SDSKAFWRVRIEAAYALANTASEETDWAG 727 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~-~----------~~~s~~~~~~L~~~l-~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g 727 (947)
|..+| ++.+-.-|.+|+..|.. . ...-..+..+|.+.| .|. =-.||..|+.+|+.++
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la-------- 89 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELIC-------- 89 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHH--------
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHH--------
Q ss_pred HHHHH-HHHH-hcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHH
Q 002253 728 LLHLV-KFYK-SRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFW 805 (947)
Q Consensus 728 ~~~L~-~~f~-~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y 805 (947)
.+|- ..|. . |+..-+|..|..+.|.....-..+...|..+.+.-+- .-.++ |
T Consensus 90 -~~l~~~~f~~~---------------------y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~---~ 143 (249)
T 2qk1_A 90 -DKLKTPGFSKD---------------------YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSG---R 143 (249)
T ss_dssp -HHHCTTTSCHH---------------------HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTC---T
T ss_pred -HhcccccccHH---------------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCC---c
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHhc-----cccccCC-CchhHHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 002253 806 LAALVQSVGELEFGQQSILFLSSLLKRIDRLLQF-----DRLMPSY-NGILTISCIRTLTQIALKLSGFISLDQVVKLIK 879 (947)
Q Consensus 806 ~a~li~al~~~~~~~~~~~~~~~~~~ei~r~~~~-----d~~~psy-~~~vt~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 879 (947)
+..+++.|....-.. +...-..++.-|.|+..- +.+.|-+ ..++. .|.++-
T Consensus 144 l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip-----~l~~~l----------------- 200 (249)
T 2qk1_A 144 NEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP-----IVIQIV----------------- 200 (249)
T ss_dssp THHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHH-----HHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-----HHHHHh-----------------
Q ss_pred ccCCCCchHHHHHHHHHHhhcc
Q 002253 880 PFRDFNTIWQVRVEASRALLDL 901 (947)
Q Consensus 880 ~~~~~~~~~~vr~~a~~~l~~~ 901 (947)
.+.-..||-+|++||..+
T Consensus 201 ----~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 201 ----NDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp ----TCSSHHHHHHHHHHHHHH
T ss_pred ----cCCCHHHHHHHHHHHHHH
No 75
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=29.22 E-value=1.6e+02 Score=32.17 Aligned_cols=13 Identities=54% Similarity=0.769 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhh
Q 002253 706 RVRIEAAYALANT 718 (947)
Q Consensus 706 ~VR~~Aa~aL~~~ 718 (947)
.||.+|+.+|+.+
T Consensus 333 ~v~~~a~~~L~~l 345 (450)
T 2jdq_A 333 RTRKEAAWAITNA 345 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554444
No 76
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=28.70 E-value=1.4e+02 Score=35.85 Aligned_cols=210 Identities=10% Similarity=0.070 Sum_probs=102.4
Q ss_pred HHhHHHhhhccCcchhHHHHHHHHHHHhhccccc-cccc-HHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 002253 690 VVNTLNNFLSDSKAFWRVRIEAAYALANTASEET-DWAG-LLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHA 767 (947)
Q Consensus 690 ~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~-~~~g-~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a 767 (947)
+...|...+.+...- .||.+|..+++.++.... .+.. +..++....+..-. . ++-++.+...+
T Consensus 598 l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~--------~------~~~vr~~a~~~ 662 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ--------V------DSPVSITAVGF 662 (861)
T ss_dssp HHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC--------T------TSHHHHHHHHH
T ss_pred HHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--------c------cHHHHHHHHHH
Confidence 334455566554321 799999988887764311 1110 22222222221100 0 11245555555
Q ss_pred HhhccccCCCC----hHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHHHHHhccc
Q 002253 768 VAMVRAADNKS----PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEF--GQQSILFLSSLLKRIDRLLQFDR 841 (947)
Q Consensus 768 ~a~~r~~~~~~----p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~--~~~~~~~~~~~~~ei~r~~~~d~ 841 (947)
++.+=..-|.. -..+...|++.|+.. | .|.-.+.+.+.+||.+.. +..-..++..++..+.+.+....
T Consensus 663 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~----~--~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 663 IADISNSLEEDFRRYSDAMMNVLAQMISNP----N--ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHTGGGGHHHHHHHHHHHHHHHHCT----T--CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhchhccchHHHHHHHHHHHhCCc----c--ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 55332222221 124445556666521 1 223467777888876532 22223466777777777665411
Q ss_pred -----cccCCCchhHHHHHHHHHHHHHHhcCC----Cc-hhhhhhhhcccCCCCc---hHHHHHHHHHHhhcccccccCh
Q 002253 842 -----LMPSYNGILTISCIRTLTQIALKLSGF----IS-LDQVVKLIKPFRDFNT---IWQVRVEASRALLDLEFHCNGI 908 (947)
Q Consensus 842 -----~~psy~~~vt~~~l~~~~~l~~~~~~~----~~-~~~~~~~~~~~~~~~~---~~~vr~~a~~~l~~~~~~~~~~ 908 (947)
=..-|...+..++++++..+...+.+. -| ...+..++........ -..||.+|+.+|-++.....|.
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 001133345567888887776443321 11 1122222222211111 3689999999999996533222
Q ss_pred h-------hHHHHHHHHhc
Q 002253 909 D-------SALSLFIKSVE 920 (947)
Q Consensus 909 ~-------~~l~~~~~~~~ 920 (947)
. ..+..++..+.
T Consensus 817 ~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 817 SIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp TTGGGTTCHHHHHHHHHHH
T ss_pred hHHHHHhcHHHHHHHHHHh
Confidence 2 45666666666
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=28.25 E-value=1.5e+02 Score=29.61 Aligned_cols=60 Identities=22% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHcCCC--------CchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcc
Q 002253 659 MWINQLEKDGDVVAQAQAIAALEALPH--------LSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTAS 720 (947)
Q Consensus 659 m~~~QL~~drdv~aq~eAi~~l~~~~~--------~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~ 720 (947)
+....|..|.++..+..|+..|+.... ....+...|.+.+.|.+ -.||..|+.+|..+..
T Consensus 60 ~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~--~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 60 ALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK--PNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHH
Confidence 455556569999999988888775311 11124455667777764 5799999999887654
No 78
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=27.00 E-value=6e+02 Score=29.57 Aligned_cols=131 Identities=13% Similarity=0.060 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHHHHHHH-HHHHhccccccCCCchhHHHHHHH
Q 002253 779 PREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRI-DRLLQFDRLMPSYNGILTISCIRT 857 (947)
Q Consensus 779 p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~~~~ei-~r~~~~d~~~psy~~~vt~~~l~~ 857 (947)
...|...++.-|.-. |+=.+|...++|.-+..+. .+..+++-+ +-+.++|.+.+|=..|... |.+
T Consensus 297 Ld~Vv~aVL~GL~D~--------DDDVRAVAAetLiPIA~p~----~l~~LL~iLWd~L~~LDDLSASTgSVMdL--LAk 362 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSP--------DEDIKLLSAELLCHFPITD----SLDLVLEKCWKNIESEELISVSKTSNLSL--LTK 362 (800)
T ss_dssp HHHHHHHHHHHTTCS--------SHHHHHHHHHHHTTSCCSS----THHHHHHHHHHHHHTCCSCCTTHHHHHHH--HHH
T ss_pred HHHHHHHHHhhcCCc--------ccHHHHHHHHHhhhhcchh----hHHHHHHHHHHHhhhhcccchhhHHHHHH--HHH
Confidence 455555555555522 2335555555665544211 233333332 3355679999997777762 222
Q ss_pred HHHHHHHhcCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccccccChhhHHHHHH--HHhccCCCcccccccc
Q 002253 858 LTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFI--KSVEEEPSLRGEIGYS 932 (947)
Q Consensus 858 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~r~~~~~~ 932 (947)
|+.... .+...| ..+-+ ++||.+ -....||.+++++|..+- ...+|.++. -.+|+++.++....++
T Consensus 363 L~s~p~-~a~~dp-~LVPR-L~PFLR-HtITSVR~AVL~TL~tfL-----~~~~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 363 IYRENP-ELSIPP-ERLKD-IFPCFT-SPVPEVRTSILNMVKNLS-----EESIDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp HHHHCT-TCCCCS-GGGGG-TGGGGT-CSSHHHHHHHHHHTTTCC-----CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHcCCc-ccccCh-HHHHH-HHhhhc-CCcHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 233221 122223 22323 356655 357899999999998876 234555544 4468888877544333
No 79
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=26.02 E-value=48 Score=34.22 Aligned_cols=54 Identities=6% Similarity=-0.037 Sum_probs=27.8
Q ss_pred CccEEEeCCCCcccccccccchhhcccccccCccccchhhHHHHHHHHHHHHhhhccc
Q 002253 304 SYKQVFLAPEMAVSSSTFGAAMGIFSSQILYDEKVIDQAIDTSIKLSFALARQWFGVY 361 (947)
Q Consensus 304 k~~~V~vp~~~~~~~~~~gagl~~~~~~lL~~~~~~d~~~~~~~~laHELAHQWFG~l 361 (947)
.+++.++++...++ +..++|.+.+.+.||-.-+ ...+..-+||||++|-=-++.
T Consensus 63 ~~~v~v~~~~~~NA-fa~~gg~I~v~~gLl~~l~---~~~ELaaVLaHElgH~~~~H~ 116 (253)
T 3c37_A 63 DYVFKVVKDDSVNA-FAIPGGRVYVHTGLLKAAD---NETELAGVLAHEINHAVARHG 116 (253)
T ss_dssp CCEEEEECCCSCCE-EEETTTEEEEEHHHHHHCS---SHHHHHHHHHHHHHHHHTTHH
T ss_pred CeEEEEEeCCCCCe-eEcCCCeEEeeHHHHhhCC---CHHHHHHHHHHHHHHHHCcCH
Confidence 45677776433333 2223344444555442110 112334589999999865544
No 80
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=25.65 E-value=5.5e+02 Score=27.65 Aligned_cols=216 Identities=16% Similarity=0.144 Sum_probs=113.2
Q ss_pred HhhcCChHHHH---HHHHHHHcCCCCchhHHhHHHhhhccCcchhHHHHHHHHHHHhhcccccccccHHHHHHHHHhcCC
Q 002253 664 LEKDGDVVAQA---QAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRF 740 (947)
Q Consensus 664 L~~drdv~aq~---eAi~~l~~~~~~s~~~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~~~~g~~~L~~~f~~~~~ 740 (947)
|-+.+|+.-+- -++..+.+.+.....+++.|.+=+.++..+ ||.-|.++|+++..++. +..+.+..++..-
T Consensus 76 l~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~--iR~lALRtL~~I~~~~m----~~~l~~~lk~~L~ 149 (355)
T 3tjz_B 76 LFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDS--YRGPAVRALCQITDSTM----LQAIERYMKQAIV 149 (355)
T ss_dssp GGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHH--HHHHHHHHHHHHCCTTT----HHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHh--HHHHHHHHHhcCCCHHH----HHHHHHHHHHHcC
Confidence 55667776664 444555555555556888898989888765 89999999999998775 6677777776322
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhcccccc
Q 002253 741 DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQ 820 (947)
Q Consensus 741 ~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~ 820 (947)
+ -..|.-++|+..+.-.++ ..|.-|.+|+-.+-.- =++.| ...++..+.+|..+.-
T Consensus 150 d-------------~~pyVRk~A~l~~~kL~~----~~pe~v~~~~~~l~~l-l~d~n----~~V~~~Al~lL~ei~~-- 205 (355)
T 3tjz_B 150 D-------------KVPSVSSSALVSSLHLLK----CSFDVVKRWVNEAQEA-ASSDN----IMVQYHALGLLYHVRK-- 205 (355)
T ss_dssp C-------------SSHHHHHHHHHHHHHHTT----TCHHHHHTTHHHHHHH-TTCSS----HHHHHHHHHHHHHHHT--
T ss_pred C-------------CCHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHH-hcCCC----ccHHHHHHHHHHHHHh--
Confidence 2 234555666666554554 3577777775444221 12333 4556555555554432
Q ss_pred ccHHHHHHHHHHHHHHHhccccccCCCchhH-HHHHHHHHHHHHHhcCCCchh------hhhhhhcccCCCCchHHHHHH
Q 002253 821 QSILFLSSLLKRIDRLLQFDRLMPSYNGILT-ISCIRTLTQIALKLSGFISLD------QVVKLIKPFRDFNTIWQVRVE 893 (947)
Q Consensus 821 ~~~~~~~~~~~ei~r~~~~d~~~psy~~~vt-~~~l~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vr~~ 893 (947)
.+...+.+++..+.+. .-.+-+. +--|+.+.+ ..+.| .+..++.+..+ .....|-.+
T Consensus 206 ~d~~a~~kLv~~l~~~--------~l~~~~~q~~llr~l~~-------~~~~d~~~~~~~~~~~l~~~L~-~~~~aVvyE 269 (355)
T 3tjz_B 206 NDRLAVSKMISKFTRH--------GLKSPFAYCMMIRVASR-------QLEDEDGSRDSPLFDFIESCLR-NKHEMVVYE 269 (355)
T ss_dssp TCHHHHHHHHHHHHSS--------CCSCHHHHHHHHHHHTC-------C-----------------CCCC-CSSHHHHHH
T ss_pred hchHHHHHHHHHHhcC--------CCcChHHHHHHHHHHHH-------hccccchhhHHHHHHHHHHHHc-CCChHHHHH
Confidence 2222344454444320 1111222 122222222 22222 23344455544 335679999
Q ss_pred HHHHhhcccccccC----hhhHHHHHHHHhccCCCccc
Q 002253 894 ASRALLDLEFHCNG----IDSALSLFIKSVEEEPSLRG 927 (947)
Q Consensus 894 a~~~l~~~~~~~~~----~~~~l~~~~~~~~~~~~~r~ 927 (947)
|..+++.+.-...+ ....|+.|| -++||.+|-
T Consensus 270 a~k~I~~l~~~~~~~~~~a~~~L~~fL--ss~d~niry 305 (355)
T 3tjz_B 270 AASAIVNLPGCSAKELAPAVSVLQLFC--SSPKAALRY 305 (355)
T ss_dssp HHHHHTC-----------CCCTHHHHH--HSSSSSSHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHH--cCCCchHHH
Confidence 99999998532111 123455554 367777754
No 81
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=24.46 E-value=3.8e+02 Score=28.25 Aligned_cols=103 Identities=9% Similarity=0.117 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCccEE-Ee--CCCCcccccccccchhhccc--ccccCccccchhhHHHHHHHH
Q 002253 277 KIHNTVEFFHNAFSHYETYLDAKFPFGSYKQV-FL--APEMAVSSSTFGAAMGIFSS--QILYDEKVIDQAIDTSIKLSF 351 (947)
Q Consensus 277 ~~~~~~~~~~~~l~~~e~~~g~~YP~~k~~~V-~v--p~~~~~~~~~~gagl~~~~~--~lL~~~~~~d~~~~~~~~laH 351 (947)
.+..+.-.+....+||.++|| .=|+. .+++ .| .....++ .|-..-.+|.+ ...++ .....+++|
T Consensus 73 ~~~DAhy~a~~t~d~y~~~~g-r~~id-~~l~~~VHyg~~y~NA--fWdg~~m~fGDG~~~~~~-------~~slDVv~H 141 (306)
T 3nqx_A 73 PLNDAHFFGNVIFNMYNDWLG-TAPLS-FQLQMRVHYSSNYENA--FWDGSAMTFGDGQNTFYP-------LVSLDVSAH 141 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-SCSSS-SCEEEEEEESSSCCCE--EECSSCEEEECCCSSBSC-------SCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC-CCCCC-CceEEEEecCCCccCc--cccCCEEEEeCCCccccc-------ccccchhhh
Confidence 355666678899999999999 55765 2332 23 1111122 12112223322 11111 123458999
Q ss_pred HHHHhhhccccCCCCCC-hhHHHHHHHHHHHHHHHHHHhC
Q 002253 352 ALARQWFGVYITPELPN-DEWLLDGLAGFLTDSFIKKFLG 390 (947)
Q Consensus 352 ELAHQWFG~lVt~~~w~-d~WL~EGfA~Y~~~~~~~~~~G 390 (947)
|+.|--.-..-.+..-. --=|||||+..+...+-....+
T Consensus 142 E~tHGvt~~~a~l~y~~esGaLnEs~SDifg~~ve~~~~~ 181 (306)
T 3nqx_A 142 EVSHGFTEQNSGLIYNGKPGGLNEAFSDMAGEAAEFYMKG 181 (306)
T ss_dssp HHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhccccccCCCCCccCCCCCcccchHHHHHHHHHHHHhcC
Confidence 99998765432222211 2359999999998765444434
No 82
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=23.58 E-value=2.5e+02 Score=34.08 Aligned_cols=171 Identities=12% Similarity=0.052 Sum_probs=97.7
Q ss_pred HhHHHhhhccCcchhHHHHHHHHHHHhhccccc------ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHH
Q 002253 691 VNTLNNFLSDSKAFWRVRIEAAYALANTASEET------DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAI 764 (947)
Q Consensus 691 ~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~~~~------~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i 764 (947)
+..|...+... -=.||.+||.+|+..+.... .-.|++.|+...++- -+ -+|+.-
T Consensus 497 Vp~LV~LL~s~--s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-------~~-----------~~k~~A 556 (810)
T 3now_A 497 TTALCALAKTE--SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-------TE-----------KGKRHA 556 (810)
T ss_dssp HHHHHHHHTCC--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-------CH-----------HHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-------CH-----------HHHHHH
Confidence 44577777653 46999999999999986432 224578888888741 11 267777
Q ss_pred HHHHhhc-cccC------CCChHHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHhhccccccccHHHHHH-----HHHH
Q 002253 765 PHAVAMV-RAAD------NKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSS-----LLKR 832 (947)
Q Consensus 765 ~~a~a~~-r~~~------~~~p~~v~~fll~ll~~NdNs~N~ysD~~y~a~li~al~~~~~~~~~~~~~~~-----~~~e 832 (947)
..||+.+ +..+ +....++...|++||.. | ++..-....+.||+++....+ ...+. .+..
T Consensus 557 a~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~-~------~~~l~~~eAl~AL~NLa~~~d--~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 557 TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ-D------CTALENFESLMALTNLASMNE--SVRQRIIKEQGVSK 627 (810)
T ss_dssp HHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST-T------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC-C------CcHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHH
Confidence 8888864 3222 11123578899999962 2 123333455678887765422 11222 3334
Q ss_pred HHHHHhccccccCCCchhHHHHHHHHHHHHH------Hh---cCCCchhhhhhhhcccCCCCchHHHHHHHHHHhhcccc
Q 002253 833 IDRLLQFDRLMPSYNGILTISCIRTLTQIAL------KL---SGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEF 903 (947)
Q Consensus 833 i~r~~~~d~~~psy~~~vt~~~l~~~~~l~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~vr~~a~~~l~~~~~ 903 (947)
|..++. |-+-.|-.++.++|++|+. +. .|.++ .+..+ .+. .-..+|.+|..+|--+..
T Consensus 628 Lv~LL~------s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~--~Lv~L----L~s-~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 628 IEYYLM------EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK--FLALL----CED-EDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHHH------SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHH--HHHHG----GGC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHc------CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHH--HHHHH----hcC-CCHHHHHHHHHHHHHHhC
Confidence 444443 3344566677788877642 00 12111 12222 222 225788888888877754
No 83
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=22.69 E-value=2.5e+02 Score=29.40 Aligned_cols=133 Identities=11% Similarity=0.101 Sum_probs=83.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcCCCCchh---------HHhHHHhhhccCcchhHHHHHHHHHHHhhcc--cc-----c
Q 002253 660 WINQLEKDGDVVAQAQAIAALEALPHLSFN---------VVNTLNNFLSDSKAFWRVRIEAAYALANTAS--EE-----T 723 (947)
Q Consensus 660 ~~~QL~~drdv~aq~eAi~~l~~~~~~s~~---------~~~~L~~~l~d~~~f~~VR~~Aa~aL~~~~~--~~-----~ 723 (947)
++.+|....+...|..|+..|+.....+.. +...|.+.|..+ .--.||..|+.||+.+.. +. .
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~ 164 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFL 164 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 445245678888999999988864322221 334566777642 125799999999998752 11 1
Q ss_pred ccccHHHHHHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhccccCCCC-----hHHHHHHHHHHhhhcCCCCC
Q 002253 724 DWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKS-----PREAVEFVLQLLKYNDNNGN 798 (947)
Q Consensus 724 ~~~g~~~L~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~r~~~~~~-----p~~v~~fll~ll~~NdNs~N 798 (947)
...|++.|++..++ .| .-+|+....||+.+=..+... -..+...|+++|+..
T Consensus 165 ~~ggi~~L~~lL~~------------~d------~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~----- 221 (296)
T 1xqr_A 165 RLDGFSVLMRAMQQ------------QV------QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE----- 221 (296)
T ss_dssp HTTHHHHHHHHHHS------------SC------HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-----
T ss_pred HCCCHHHHHHHHcC------------CC------HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC-----
Confidence 23578888888763 11 237887778887763321111 112566788888743
Q ss_pred CCchHHHHHHHHHHhhccccc
Q 002253 799 PYSDVFWLAALVQSVGELEFG 819 (947)
Q Consensus 799 ~ysD~~y~a~li~al~~~~~~ 819 (947)
|.-.+...+.+|+++..+
T Consensus 222 ---d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 222 ---HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp ---CSTHHHHHHHHHHHHHTT
T ss_pred ---ChhHHHHHHHHHHHHHhC
Confidence 344788888888876543
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=22.20 E-value=5.3e+02 Score=26.78 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=90.9
Q ss_pred CChHHHHHHHHHHHcCCCC---c-----hhHHhHHHh-hhccCcchhHHHHHHHHHHHhhccccc-------ccccHHHH
Q 002253 668 GDVVAQAQAIAALEALPHL---S-----FNVVNTLNN-FLSDSKAFWRVRIEAAYALANTASEET-------DWAGLLHL 731 (947)
Q Consensus 668 rdv~aq~eAi~~l~~~~~~---s-----~~~~~~L~~-~l~d~~~f~~VR~~Aa~aL~~~~~~~~-------~~~g~~~L 731 (947)
.+...+..|+..|...-.. . .-.+..|.. .|.++ --.||..||.+|+.++.... ...|++.|
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~--~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG--AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 3456777777777653210 0 012334666 66654 45899999999999875321 23578999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhhc-cccCCCCh-----HHHHHHHHHHhhhcCCCCCCCchHHH
Q 002253 732 VKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMV-RAADNKSP-----REAVEFVLQLLKYNDNNGNPYSDVFW 805 (947)
Q Consensus 732 ~~~f~~~~~~~~~~~p~~NdF~d~~~y~~~~~i~~a~a~~-r~~~~~~p-----~~v~~fll~ll~~NdNs~N~ysD~~y 805 (947)
++.+++- + . --+++....||+.+ |+.. ..+ ..+...|+.+|+. .|.-.
T Consensus 130 l~LL~~~---~-----~---------~~v~~~A~~ALsnl~~~~~-~~~~~~~~~ggi~~L~~lL~~--------~d~~v 183 (296)
T 1xqr_A 130 LRLLDRD---A-----C---------DTVRVKALFAISCLVREQE-AGLLQFLRLDGFSVLMRAMQQ--------QVQKL 183 (296)
T ss_dssp HHHHHHC---S-----C---------HHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHS--------SCHHH
T ss_pred HHHHccC---C-----C---------HHHHHHHHHHHHHHHcCCc-HHHHHHHHCCCHHHHHHHHcC--------CCHHH
Confidence 9999851 1 0 12677777888876 4211 011 1255678888872 24556
Q ss_pred HHHHHHHhhccccccc-cHH-HHH-HHHHHHHHHHhccccccCCCchhHHHHHHHHHHHH
Q 002253 806 LAALVQSVGELEFGQQ-SIL-FLS-SLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIA 862 (947)
Q Consensus 806 ~a~li~al~~~~~~~~-~~~-~~~-~~~~ei~r~~~~d~~~psy~~~vt~~~l~~~~~l~ 862 (947)
....+.+|+++..+.. ... +.+ .++.-+-.+|+- -..-|-..|+.+|..+.
T Consensus 184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~------~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT------EHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS------CCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC------CChhHHHHHHHHHHHHH
Confidence 7777777777543311 111 111 244444444432 23344455667776663
Done!