Query 002254
Match_columns 947
No_of_seqs 279 out of 1289
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j5w_A Glycyl-tRNA synthetase 100.0 2E-136 6E-141 1062.8 13.7 236 1-236 63-298 (298)
2 3rf1_A Glycyl-tRNA synthetase 100.0 2E-133 8E-138 1044.4 10.2 231 1-231 75-309 (311)
3 2ztg_A Alanyl-tRNA synthetase; 99.9 3.1E-26 1.1E-30 272.6 0.2 129 1-137 121-282 (739)
4 2o08_A BH1327 protein; putativ 95.7 0.059 2E-06 54.2 11.3 95 617-719 18-131 (188)
5 2ogi_A Hypothetical protein SA 95.6 0.059 2E-06 54.7 10.9 96 616-719 25-139 (196)
6 3dto_A BH2835 protein; all alp 95.4 0.055 1.9E-06 56.6 9.9 100 616-721 24-127 (223)
7 3ccg_A HD superfamily hydrolas 95.3 0.098 3.4E-06 52.6 11.0 95 617-719 19-133 (190)
8 2pq7_A Predicted HD superfamil 95.2 0.073 2.5E-06 54.7 10.2 102 613-722 29-138 (220)
9 3hc1_A Uncharacterized HDOD do 94.7 0.27 9.1E-06 53.0 13.2 142 616-768 117-289 (305)
10 3tm8_A BD1817, uncharacterized 94.5 0.19 6.4E-06 55.1 11.7 110 613-724 162-293 (328)
11 3b57_A LIN1889 protein; Q92AN1 94.5 0.16 5.6E-06 51.9 10.5 103 615-722 23-129 (209)
12 2pjq_A Uncharacterized protein 94.2 0.12 3.9E-06 54.0 8.6 103 614-721 27-133 (231)
13 3dsq_A Pyrrolysyl-tRNA synthet 94.2 0.13 4.6E-06 55.5 9.4 111 3-128 155-274 (288)
14 1f7u_A Arginyl-tRNA synthetase 94.0 0.042 1.4E-06 65.3 5.5 106 834-939 485-596 (607)
15 3djb_A Hydrolase, HD family; a 93.2 0.14 4.9E-06 53.3 7.2 101 615-721 23-127 (223)
16 1vqr_A Hypothetical protein CJ 93.0 0.65 2.2E-05 49.7 12.1 85 667-764 198-282 (297)
17 3fnr_A Arginyl-tRNA synthetase 92.7 0.087 3E-06 60.7 5.3 90 841-931 343-437 (464)
18 1iq0_A Arginyl-tRNA synthetase 92.3 0.076 2.6E-06 62.8 4.1 104 834-940 469-582 (592)
19 2zze_A Alanyl-tRNA synthetase; 92.1 0.034 1.2E-06 67.4 0.9 86 48-137 177-288 (752)
20 3m1t_A Putative phosphohydrola 92.1 0.83 2.8E-05 48.5 11.5 103 616-724 104-230 (275)
21 3i7a_A Putative metal-dependen 91.5 0.92 3.1E-05 48.2 11.0 101 616-719 116-236 (281)
22 2zue_A Arginyl-tRNA synthetase 91.2 0.092 3.2E-06 62.6 3.1 104 836-940 505-619 (629)
23 2qgs_A Protein Se1688; alpha-h 89.8 1.3 4.4E-05 45.8 10.0 102 615-722 23-129 (225)
24 3hy0_A Alanyl-tRNA synthetase; 89.3 0.36 1.2E-05 55.0 5.7 102 13-127 119-256 (441)
25 3gw7_A Uncharacterized protein 88.8 0.44 1.5E-05 50.3 5.6 121 616-742 24-162 (239)
26 3ljx_A MMOQ response regulator 85.7 2.4 8.2E-05 45.3 9.3 103 617-722 108-233 (288)
27 3qtc_A Pyrrolysyl-tRNA synthet 84.0 2.5 8.7E-05 45.2 8.5 110 3-128 161-277 (290)
28 3mem_A Putative signal transdu 83.8 7.6 0.00026 44.3 12.9 110 614-729 275-411 (457)
29 1yfs_A Alanyl-tRNA synthetase; 81.1 0.52 1.8E-05 54.1 1.8 79 46-127 142-239 (465)
30 2paq_A 5'-deoxynucleotidase YF 80.2 2 6.9E-05 44.0 5.7 115 601-725 10-148 (201)
31 1nnh_A Asparaginyl-tRNA synthe 73.3 1.4 4.9E-05 47.6 2.4 29 103-131 257-285 (294)
32 2hek_A Hypothetical protein; p 72.3 8.9 0.00031 42.9 8.6 138 583-736 21-181 (371)
33 2du3_A O-phosphoseryl-tRNA syn 63.3 17 0.00059 42.6 8.8 98 19-127 224-346 (534)
34 1ati_A Glycyl-tRNA synthetase; 62.8 10 0.00035 43.9 6.9 97 20-119 231-372 (505)
35 1n9w_A Aspartyl-tRNA synthetas 56.4 5.8 0.0002 45.1 3.3 59 72-130 332-413 (422)
36 2dqb_A Deoxyguanosinetriphosph 50.8 56 0.0019 36.6 10.0 102 616-722 74-202 (376)
37 2gfh_A Haloacid dehalogenase-l 50.1 7.4 0.00025 40.0 2.6 46 32-83 176-223 (260)
38 4ah6_A Aspartate--tRNA ligase, 50.0 10 0.00035 45.3 4.0 84 70-153 481-594 (617)
39 3ib6_A Uncharacterized protein 47.3 8.4 0.00029 37.5 2.3 44 32-81 97-141 (189)
40 1eov_A ASPRS, aspartyl-tRNA sy 46.8 11 0.00037 43.6 3.5 59 73-131 396-479 (487)
41 3l4g_A Phenylalanyl-tRNA synth 46.2 35 0.0012 39.8 7.6 99 19-128 365-478 (508)
42 1yv9_A Hydrolase, haloacid deh 40.6 11 0.00038 38.2 2.1 46 31-82 182-228 (264)
43 2g80_A Protein UTR4; YEL038W, 39.9 8.1 0.00028 40.3 0.9 45 31-82 186-231 (253)
44 2q14_A Phosphohydrolase; BT420 38.3 62 0.0021 36.7 7.9 126 600-737 33-184 (410)
45 2nly_A BH1492 protein, diverge 36.1 49 0.0017 35.0 6.2 172 311-500 3-189 (245)
46 2cqz_A 177AA long hypothetical 35.8 15 0.00052 36.6 2.2 102 614-730 29-141 (177)
47 2ljb_A M2 protein, BM2 protein 35.6 24 0.00082 26.6 2.6 21 732-752 3-23 (35)
48 1r89_A TRNA nucleotidyltransfe 34.9 60 0.002 37.2 7.0 114 265-394 278-392 (437)
49 2zg6_A Putative uncharacterize 34.5 22 0.00075 34.9 3.1 43 31-82 149-192 (220)
50 2kih_A Matrix protein 2; S31N, 33.5 26 0.0009 27.2 2.6 21 732-752 3-23 (43)
51 1yns_A E-1 enzyme; hydrolase f 31.7 14 0.00046 38.2 1.1 45 31-82 186-231 (261)
52 3smv_A S-(-)-azetidine-2-carbo 31.4 20 0.00067 34.7 2.1 49 31-82 151-200 (240)
53 3m4p_A Ehasnrs, asparaginyl-tR 31.3 19 0.00067 41.2 2.3 58 74-131 367-448 (456)
54 3ed5_A YFNB; APC60080, bacillu 28.5 31 0.001 33.4 2.9 76 31-122 157-234 (238)
55 2om6_A Probable phosphoserine 28.5 30 0.001 33.3 2.8 44 31-80 157-200 (235)
56 3kbb_A Phosphorylated carbohyd 25.9 19 0.00066 34.8 0.9 43 31-80 139-182 (216)
57 3vay_A HAD-superfamily hydrola 25.7 33 0.0011 33.1 2.6 44 32-81 155-198 (230)
58 3i7f_A Aspartyl-tRNA synthetas 25.3 45 0.0015 39.3 4.0 59 72-131 458-540 (548)
59 1wp7_A Fusion protein; fusion 25.1 31 0.0011 31.2 2.0 59 105-176 23-81 (89)
60 2hx1_A Predicted sugar phospha 24.7 35 0.0012 35.0 2.7 47 30-82 202-253 (284)
61 2hoq_A Putative HAD-hydrolase 23.5 39 0.0013 33.3 2.7 44 32-81 150-194 (241)
62 3cnh_A Hydrolase family protei 23.4 22 0.00074 33.9 0.7 43 31-80 140-182 (200)
63 2b0c_A Putative phosphatase; a 23.0 24 0.00083 33.6 1.0 45 31-82 147-192 (206)
64 3bkd_A Transmembrane domain of 23.0 63 0.0022 22.8 2.7 19 734-752 1-19 (26)
65 2ho4_A Haloacid dehalogenase-l 22.9 40 0.0014 33.4 2.7 43 31-79 178-220 (259)
66 3a5y_A GENX, putative lysyl-tR 22.5 31 0.0011 38.1 1.9 57 73-129 252-339 (345)
67 2pr7_A Haloacid dehalogenase/e 22.4 22 0.00074 31.6 0.5 42 31-79 73-114 (137)
68 4gib_A Beta-phosphoglucomutase 22.3 29 0.001 35.0 1.5 43 31-80 169-211 (250)
69 3l5k_A Protein GS1, haloacid d 22.2 36 0.0012 33.7 2.1 46 31-81 170-215 (250)
70 3u26_A PF00702 domain protein; 21.6 49 0.0017 31.9 2.9 45 31-81 154-198 (234)
71 2y9k_A Protein INVG; protein t 20.9 48 0.0016 31.5 2.6 78 116-222 46-134 (137)
72 3k1z_A Haloacid dehalogenase-l 20.8 28 0.00095 35.3 0.9 46 31-82 160-206 (263)
73 2i6x_A Hydrolase, haloacid deh 20.3 27 0.00092 33.4 0.7 43 31-80 149-191 (211)
No 1
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=100.00 E-value=1.8e-136 Score=1062.82 Aligned_cols=236 Identities=56% Similarity=1.012 Sum_probs=225.6
Q ss_pred CCCCCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254 1 MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 80 (947)
Q Consensus 1 ~yv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw 80 (947)
|||||||||+|||||||||||||||||||||||||+|+|||||+||++||||+++|||||||||||||||||||||||||
T Consensus 63 AYVqPsRRP~DGRYGeNPNRLq~y~QfQVilKPsP~niQeLYL~SL~alGid~~~HDIRFVEDnWEsPTLGAwGLGWEVW 142 (298)
T 1j5w_A 63 AYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVW 142 (298)
T ss_dssp EEEEEEECCC-----CCTTCCSEEEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEE
T ss_pred eeeccCCCCCCCCcCCCchhhhhheeeEEEECCCCccHHHHHHHHHHHhCCCcccCCceeeccCCCCCccccccccceee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeeeeeeehhhhccCcccccceeehhhhHHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHH
Q 002254 81 MDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQ 160 (947)
Q Consensus 81 ~~gmeitq~tyfqq~gg~~~~~~~~e~tygler~~~~~q~~~~~~~~~~~~~~~y~~~~~~~e~~~s~~~~~~~~~~~~~ 160 (947)
||||||||||||||+||++|+|||+||||||||||||||+|||||||.||+++||||||+|+|+|+|+||||+||+++|+
T Consensus 143 ldGMEITQFTYFQQvGGi~c~pv~~EITYGLERiamylQ~vd~vydl~w~~~vtYGdvf~q~E~E~S~ynFe~ad~~~L~ 222 (298)
T 1j5w_A 143 LDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLF 222 (298)
T ss_dssp ETTEEEEEEEEEEEBTTBCCSSCCEEEEEEHHHHHHHHHTCSSGGGCEEETTEEHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred EcceeeehhhhhhhcCCcccCccceeecccHHHHHHHHhCCCceeccccCCCCceehhhcccHHHHHHhcccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcchhhhhhhhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002254 161 KQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPL 236 (947)
Q Consensus 161 ~~f~~~~~e~~~~~~~~l~~pay~~~~k~sh~fn~ldar~~~~~~er~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 236 (947)
++|+.||+||++|++++|++||||+||||||+|||||||||||||||++||+|||+|||+||++|+++|+++||||
T Consensus 223 ~~F~~yE~E~~~ll~~~L~lPAYd~~LK~SH~FNlLDARgaISvtER~~yI~rvR~la~~~a~~y~~~r~~~g~pl 298 (298)
T 1j5w_A 223 RHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSPA 298 (298)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=100.00 E-value=2.2e-133 Score=1044.41 Aligned_cols=231 Identities=52% Similarity=0.948 Sum_probs=228.6
Q ss_pred CCCCCCCCCCCCCCCCCCccccceeeeEEEEcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254 1 MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 80 (947)
Q Consensus 1 ~yv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw 80 (947)
|||||||||+|||||||||||||||||||||||||+|+|||||+||++||||+++|||||||||||||||||||||||||
T Consensus 75 AYVqPsRRP~DGRYGeNPNRLq~yyQfQVilKPsP~niQeLYL~SL~alGId~~~HDIRFVEDnWEsPTLGAWGLGWEVW 154 (311)
T 3rf1_A 75 AYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDLKSHDIRFVEDNWESPSLGAWGLGWEVW 154 (311)
T ss_dssp EEEEEEECGGGCCTTCCSSCCSEEEEEEEEEESCCTTHHHHHHHHHHHTTCCGGGSCEEEEECCEEETTTTEEEEEEEEE
T ss_pred eeeccCCCCCCCCcCCCchhhhhheeeEEEEcCCCccHHHHHHHHHHHhCCCccccCeeEeccCCCCCcccccccceEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeeeeeeehhhhccCcccccceeehhhhHHHHHHHHhCCCccceeeeCC----CCceecccccchhhhhccccccCCH
Q 002254 81 MDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYAD----GITYGELFLENEKEMSAYYLEHANV 156 (947)
Q Consensus 81 ~~gmeitq~tyfqq~gg~~~~~~~~e~tygler~~~~~q~~~~~~~~~~~~----~~~y~~~~~~~e~~~s~~~~~~~~~ 156 (947)
|||||||||||||||||++|+|||+||||||||||||||+|||||||.||+ ++||||||+|+|+|+|+||||+||+
T Consensus 155 ldGMEVTQFTYFQQvGGi~c~pv~~EITYGLERlamylQ~vd~vyDl~w~~~~~~~vtYGdvf~q~E~E~S~ynFe~ad~ 234 (311)
T 3rf1_A 155 LDGMEVTQFTYFQQVGGIAVDLVSAEITYGLERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDV 234 (311)
T ss_dssp ETTEEEEEEEEEEEETTEECSSCCEEEEEEHHHHHHHHTTCSSGGGSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCH
T ss_pred EcCeeEeeeeeeeeeCCccccccceeeehhHHHHHHHHhCCCeeeeccccCCCCCCcchhhhhcccHHHHhhhCcccCCH
Confidence 999999999999999999999999999999999999999999999999998 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 002254 157 HHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKS 231 (947)
Q Consensus 157 ~~~~~~f~~~~~e~~~~~~~~l~~pay~~~~k~sh~fn~ldar~~~~~~er~~~~~~~r~~~~~~~~~~~~~~~~ 231 (947)
++|+++|++||+||+||++++|++||||+||||||+|||||||||||||||++||+|||+|||+||++|+++|.+
T Consensus 235 ~~L~~~F~~~E~Ea~~ll~~~L~lPAYd~vLK~SH~FNlLDARgaISvtER~~yI~RvR~La~~~A~~y~~~~~~ 309 (311)
T 3rf1_A 235 KILNEQFENSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAEIYKKNLNE 309 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998864
No 3
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.91 E-value=3.1e-26 Score=272.56 Aligned_cols=129 Identities=22% Similarity=0.485 Sum_probs=121.3
Q ss_pred CCCCCCCCCCCCCCCCCCccccceeeeEEEEcC-C---Ccc-------hHHHHHHHHHhcCCCCCCCceeeecCC-CCCc
Q 002254 1 MYVEPSIRPDDSRYGENPNRLQRHTQFQVILKP-D---PGN-------SQDLFIRSLSALGIDVTEHDIRFVEDN-WESP 68 (947)
Q Consensus 1 ~yv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp-~---p~~-------~~~~yl~sl~~~g~~~~~~dirfved~-we~p 68 (947)
+++|||+|+.| +||++|.++||||+++|++ | |+| .+++|.++|+.||||+. +|+| +|| ||++
T Consensus 121 ~~~Q~ciR~~D---~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l~~~g~~~~--~i~~-~dnfW~~g 194 (739)
T 2ztg_A 121 TISQPCIRLDD---LDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNELGVKKE--DIVY-KEEPWAGG 194 (739)
T ss_dssp EEEEEEECGGG---GGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHHHTCCGG--GCEE-EEEEEEET
T ss_pred ccccccccCcc---cccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHHHHhCCCHH--Heee-ccCcccCC
Confidence 47899999999 8999999999999999999 5 665 99999999988999988 7988 899 9999
Q ss_pred ccccccccceeeecCeeeeeeehhh----hccCc--------ccccceeehhhhHHHHHHHHhCCCccceeeeCC-----
Q 002254 69 VLGAWGLGWEIWMDGMEITQFTYFQ----QAGSL--------QLSPVSVEITYGLERILMLLQGVDHFKKIQYAD----- 131 (947)
Q Consensus 69 ~lga~g~gwevw~~gmeitq~tyfq----q~gg~--------~~~~~~~e~tygler~~~~~q~~~~~~~~~~~~----- 131 (947)
|+||.+||||+|||||+|++|+| +.|++ +|.+.+++.+||||||||+||||+|+||..|.+
T Consensus 195 --Gp~Gpc~Ei~~dg~EiwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~~f~pii~~~ 272 (739)
T 2ztg_A 195 --GNAGPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTI 272 (739)
T ss_dssp --TEEEEEEEEEETTEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHHHCHHHHHHH
T ss_pred --CCCCCeeEEEECCEEeeeeeeEEeeecCCCceeecCccccCCCCCeEecCcCHHHHHHHHcCCCchHHhhHHHHHHHH
Confidence 99999999999999999999999 99999 899999999999999999999999999999986
Q ss_pred ----CCceec
Q 002254 132 ----GITYGE 137 (947)
Q Consensus 132 ----~~~y~~ 137 (947)
+++||.
T Consensus 273 ~~~~g~~y~~ 282 (739)
T 2ztg_A 273 IDNSNVSFNR 282 (739)
T ss_dssp HHTSCCSSCT
T ss_pred HHHhCCCccc
Confidence 677873
No 4
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=95.72 E-value=0.059 Score=54.17 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcc-----------------hhhhhcChhhhhHHHHHHHHh
Q 002254 617 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA-----------------TSVVMEFTSLAGVMACHYALR 679 (947)
Q Consensus 617 Sl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~-----------------T~MV~EFPELQGiMG~~YA~~ 679 (947)
..+..+.|+..+|..||..+|++.+ .+..||.|--.--. |..-.++....+.+|..+++.
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~---~~~~agLLHDIGk~~~~~~il~~~~~~~~~l~~~e~~~~~~H~~~G~~il~~ 94 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQ---KAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVRE 94 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence 5889999999999999999999854 46778877432211 111123345689999999998
Q ss_pred -CCC-CHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHH
Q 002254 680 -DGY-SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 719 (947)
Q Consensus 680 -~GE-~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlD 719 (947)
-|. +++|+.||..|-. | .-|.+..+.+|++||+++
T Consensus 95 ~~~~~~~~i~~aI~~Hh~----g-~~~~~~~~~Iv~vAD~i~ 131 (188)
T 2o08_A 95 EVGIEDEDVLQAIRFHTT----G-RPNMSLLEKIIFLADYIE 131 (188)
T ss_dssp HHCCCCHHHHHHHHTTTT----C-CTTCCHHHHHHHHHHHHS
T ss_pred ccCCChHHHHHHHHHhcc----C-CCCCCHHHHhhhhhccCC
Confidence 788 9999999999986 2 236788999999999953
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=95.62 E-value=0.059 Score=54.68 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcc-----------------hhhhhcChhhhhHHHHHHHH
Q 002254 616 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA-----------------TSVVMEFTSLAGVMACHYAL 678 (947)
Q Consensus 616 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~-----------------T~MV~EFPELQGiMG~~YA~ 678 (947)
...+..+.|+..+|..||..+|++.+ .+.-||.|--.--. |..-.++....+..|..+++
T Consensus 25 ~~~~~Hs~~Va~~A~~lA~~~g~d~~---~~~~AgLLHDIGK~~~~~~il~~~~~~~~~l~~~E~~~~~~H~~~G~~ll~ 101 (196)
T 2ogi_A 25 DKRFNHVLGVERAAIELAERYGYDKE---KAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYKIQ 101 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH---HHHHHHHHTTTTTTCCHHHHHHHHHHHCCCTGGGGSCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHH---HHHHHHHHHHcCCcCCHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHH
Confidence 35889999999999999999999854 46778776432111 11111334568999999999
Q ss_pred h-CCC-CHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHH
Q 002254 679 R-DGY-SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 719 (947)
Q Consensus 679 ~-~GE-~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlD 719 (947)
. -|. +++|+.||..|-. | .-+.+..+.++++||+++
T Consensus 102 ~~~~~~~~~i~~aI~~Hh~----g-~~~~~~~~~Iv~vAD~i~ 139 (196)
T 2ogi_A 102 EDLAIKDQDILAAIAKHTV----G-SAQMSTLDKIVYVADYIE 139 (196)
T ss_dssp HHSCCCCHHHHHHHHTTTT----C-CSSCCHHHHHHHHHHHHC
T ss_pred HccCCCcHHHHHHHHHhcC----C-CCCCCHHHHhhhhheecC
Confidence 8 888 9999999999886 2 236688999999999953
No 6
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=95.39 E-value=0.055 Score=56.56 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcchhhhhcChhhhhHHHHHHHHhCCCCH----HHHHHHH
Q 002254 616 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQ----QIAEALL 691 (947)
Q Consensus 616 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~----~VA~AI~ 691 (947)
|-=++-+.|+..+|..||...+.+. ..+.-||.|--. ...-...=++....|++......|.++ .|+.+|.
T Consensus 24 ~H~~~H~~rV~~~a~~ia~~~~~d~---~~l~~AalLHDi--g~~k~~~~~~~ga~~a~~~L~~~g~~~~~i~~V~~~I~ 98 (223)
T 3dto_A 24 GHDWYHIRRVTLMAKAIGEQEKVDV---FVVQIAALFHDL--IDDKLVDDPETAKQQLIDWMEAAGVPSQKIDHTMDIIN 98 (223)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHST--TC-------CHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhhc--cccccCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5568899999999999999877763 457778877533 322112225566678888888999998 4999999
Q ss_pred hhcCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002254 692 EINLPRFSGDVLPKTDVGTVLAVADRLDTL 721 (947)
Q Consensus 692 EhYlPr~agD~LP~s~~G~iLslADKlDtL 721 (947)
.|-.+..-++ -|.|..+.+|.-|||||.|
T Consensus 99 ~Hs~~~~~~~-~p~tlEa~IV~dADrLDal 127 (223)
T 3dto_A 99 TISFKGGHGQ-SLATREAMVVQDADRLDAL 127 (223)
T ss_dssp CC-----------CCHHHHHHHHHHHGGGS
T ss_pred HcCCccCCCC-CCCCHHHHHHHhHHHHHHH
Confidence 9854443333 3999999999999999964
No 7
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=95.25 E-value=0.098 Score=52.65 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhh---cchhhh---------------hcChhhhhHHHHHHHH
Q 002254 617 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSD---LATSVV---------------MEFTSLAGVMACHYAL 678 (947)
Q Consensus 617 Sl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaD---L~T~MV---------------~EFPELQGiMG~~YA~ 678 (947)
..+..+.|+..+|..||..+|++.+ .+.-||.|--.- ....+. ..+....+.+|..+++
T Consensus 19 ~~~~Hs~~Va~~A~~lA~~~g~d~~---~~~~AgLLHDiGk~~~~~~il~~~~~~~~~l~~~E~~~~~~~H~~~Ga~il~ 95 (190)
T 3ccg_A 19 KRYKHSLGVMDTAVRLAGIYNEDTE---KARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAK 95 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH---HHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCHHHHhHHHcchHHHHHHHHH
Confidence 4788999999999999999999854 467787774322 111111 1334568999999999
Q ss_pred h-CCC-CHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHH
Q 002254 679 R-DGY-SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 719 (947)
Q Consensus 679 ~-~GE-~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlD 719 (947)
. -|. +++|+.||..|-.+ .-+.+..+.+|++||+++
T Consensus 96 ~~~~~~~~~i~~aI~~Hh~g-----~~~~~~~~~Iv~vAD~i~ 133 (190)
T 3ccg_A 96 KVIGIDDEDVLNAIEFHTTG-----RPNMSLLEKIIYIADYIE 133 (190)
T ss_dssp HTTCCCCHHHHHHHHTTTTC-----CSSCCHHHHHHHHHHHHS
T ss_pred HhcCCCcHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHhCC
Confidence 8 788 99999999999862 226688999999999953
No 8
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=95.22 E-value=0.073 Score=54.68 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=74.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcchhhhhcChhhhhHHHHHHHH----hCCCCH----
Q 002254 613 EKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYAL----RDGYSQ---- 684 (947)
Q Consensus 613 ~kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~----~~GE~~---- 684 (947)
..-+..++.+.|+..+|..||...+.+. ..+.-||.|--.+...+- .....++..|...|+ ..|-++
T Consensus 29 ~~~~h~~~H~~rV~~~a~~la~~~~~d~---~~l~~AaLLHDIg~~~~~--~~~~~H~~~ga~~a~~~L~~~~~~~~~i~ 103 (220)
T 2pq7_A 29 DDPAHDISHTFRVMENASEIASREKCDL---QKAIIAALLHDIKRPHEA--LTGVDHAESGAEYASGLLPTMGFDISFVA 103 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHTTTTHHHHH--HHCCCHHHHHHHHHHHHGGGGTCCHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHcCCCcccC--CCcCCHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 5568889999999999999999988653 467889998766532111 111234577887766 568887
Q ss_pred HHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002254 685 QIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 722 (947)
Q Consensus 685 ~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlDtLv 722 (947)
.|+.+|.-|-.|.+ .-|.+..+.+|.+||+||.|.
T Consensus 104 ~v~~~I~~H~~~~~---~~~~~~~a~Iv~dAD~Ldal~ 138 (220)
T 2pq7_A 104 EVSKAIRSHRYSGG---LTPTSLTGKILQDADRLDAIG 138 (220)
T ss_dssp HHHHHHHHCC--------CCCSHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHcCcccC---CCCCCHHHHHHHHhhHHhhcc
Confidence 59999999987643 357789999999999999763
No 9
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=94.69 E-value=0.27 Score=53.02 Aligned_cols=142 Identities=17% Similarity=0.114 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcch----------hh------------hhcCh---hhhh
Q 002254 616 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLAT----------SV------------VMEFT---SLAG 670 (947)
Q Consensus 616 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T----------~M------------V~EFP---ELQG 670 (947)
..++..+.|+..+|..||..+|.+. .+.+.-||.|.-.-..- .+ -.|+- ...+
T Consensus 117 ~~~~~hs~~va~~a~~la~~~~~~~--~~~~~~agllHDIGkl~l~~~~p~~~~~il~~~~~~~~~l~~~E~~~~~~~H~ 194 (305)
T 3hc1_A 117 STLWAHSLGVARIAKLIAERTGFLN--PVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEERLFGTSHC 194 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHCCCHH
Confidence 4578999999999999999998853 23455565543221110 00 01211 2467
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCCCChh-h---h--hHHH
Q 002254 671 VMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPF-G---L--RRIS 744 (947)
Q Consensus 671 iMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlDtLvG~F~iG~~PTGS~DPf-A---L--RRaA 744 (947)
.+|...++.-|.++.++.+|..|.-|...+++ .+..+.+|++||.+|.+.|.- +|...|+ . + .-.|
T Consensus 195 ~iG~~ll~~w~lp~~i~~~I~~HHe~~~~~~~--~~~~a~Iv~lAD~~~~~~~~g------~~~~~~~~~~~~~~~~~~a 266 (305)
T 3hc1_A 195 EVGFALAKRWSLNEFICDTILYHHDIEAVPYK--QAAIVAMVAFADEYCTLRRLG------FEGHKPVDSVRTLLENHPS 266 (305)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHTTCGGGCSSS--CCHHHHHHHHHHHHHHHTTSC------CSCCCCCSCHHHHHHHCTH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCChhhcccc--ccHHHHHHHHHHHHHHHhCCC------CCccccCCcccccCCCHHH
Confidence 89999999999999999999999998765543 357899999999999988732 1222222 1 3 5556
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 002254 745 YGLVQILIEKDKNLDLELALRLAA 768 (947)
Q Consensus 745 lGIirIl~e~~~~l~L~~li~~a~ 768 (947)
+.+++=-. ..++-++.+++....
T Consensus 267 ~~~l~~~~-g~~dp~l~~~~~~~~ 289 (305)
T 3hc1_A 267 WGVIRRSL-GGSDFDEKLIVAELD 289 (305)
T ss_dssp HHHHHHHS-TTCCCCHHHHHHHHH
T ss_pred HHHhCccc-ccCcHHHHHHHHHHH
Confidence 66555333 223556766665543
No 10
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=94.54 E-value=0.19 Score=55.08 Aligned_cols=110 Identities=14% Similarity=0.183 Sum_probs=80.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHH-HHHHHHhhhhhcc---hhhh--------hcCh--hhhhHHHHH-HH
Q 002254 613 EKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQI-VQEAASLAMSDLA---TSVV--------MEFT--SLAGVMACH-YA 677 (947)
Q Consensus 613 ~kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~-~~RAA~L~KaDL~---T~MV--------~EFP--ELQGiMG~~-YA 677 (947)
.+=...+..+.|+..+|..||..+|++.++... +.-||.|.-.-.+ ..+. .||- ......|.. ..
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIGk~~ip~~il~k~~~L~~~E~~~~~~H~~~G~~~ll 241 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLDSMSPEDLALWKKHPIEGAQKVQ 241 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGGGTTCSCCCSSCGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCCcccCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999999999877666 7779988643322 1111 1222 236778888 67
Q ss_pred HhCCCCHHHHHHHHhhcCCCCCCCCCCC-------chhHHHHHHHHHHHHHHHh
Q 002254 678 LRDGYSQQIAEALLEINLPRFSGDVLPK-------TDVGTVLAVADRLDTLVGL 724 (947)
Q Consensus 678 ~~~GE~~~VA~AI~EhYlPr~agD~LP~-------s~~G~iLslADKlDtLvG~ 724 (947)
...|.++.|+.+|..|.-. ..|.- |. +..+.+++|||.+|.|+.-
T Consensus 242 ~~~~~~~~v~~~i~~HHEr-~dGsG-P~gl~g~~I~~~arIv~vaD~~dal~~~ 293 (328)
T 3tm8_A 242 DKKHFDQTVINIIGQHEET-INGTG-PKGLREKDMDPLAVLVSSANAMDRLITF 293 (328)
T ss_dssp TCTTSCHHHHHHHHHTTCC-TBSCS-TTCCBGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHhcCC-CCCCC-CCCCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 7778999999999999853 22323 53 4568999999999999873
No 11
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=94.50 E-value=0.16 Score=51.89 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcchhhhhcChhhhhHHHHHHHHhCCCCHH----HHHHH
Q 002254 615 LGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQ----IAEAL 690 (947)
Q Consensus 615 LGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~----VA~AI 690 (947)
-|.-++-+.|+..+|..||...+.+. ..+.-||.|--. ...--..=+++...+++......|.+++ |+.+|
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~---~~v~~AAlLHDi--g~~~~~~~~~~~a~~a~~~L~~~g~~~~~~~~V~~~I 97 (209)
T 3b57_A 23 TGHDWSHIKRVWKLSKEIQSKEGGDL---FTIELAALFHDY--SDIKLTTDEQEATKTLINWMETKEIPSELIKKIIRII 97 (209)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCSCH---HHHHHHHHHTTC--CC-------CHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhcc--CcccCCCchHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45568999999999999999877763 457788887432 1111111123455788888888999884 89999
Q ss_pred HhhcCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002254 691 LEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 722 (947)
Q Consensus 691 ~EhYlPr~agD~LP~s~~G~iLslADKlDtLv 722 (947)
..|=.+...++.-|.|..+.+|.-|||||.|-
T Consensus 98 ~~Hs~~~~~~~~~~~~~ea~iv~dAD~LDalg 129 (209)
T 3b57_A 98 QSVSFKKGKNTFKALTIEEKIVQDADRLDAIG 129 (209)
T ss_dssp HHHC---------CCCHHHHHHHHHHHHTTSH
T ss_pred HHcCccccCCCCCCCCHHHHHHcCHHHHhHHH
Confidence 99954444444679999999999999999763
No 12
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=94.19 E-value=0.12 Score=54.03 Aligned_cols=103 Identities=21% Similarity=0.140 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcchhhhhcChhhhhHHHHHHHHhCCCCHH----HHHH
Q 002254 614 KLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQ----IAEA 689 (947)
Q Consensus 614 kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~----VA~A 689 (947)
.-+--++-+.|+..+|..||...+.+. +.+.-||.|=-.-. .-...-.+....+++.+....|-+++ |+.+
T Consensus 27 ~~~H~~~H~~rV~~~a~~ia~~~~~d~---~ll~lAAlLHDigk--~k~~~~~~~ga~~a~~~L~~~g~~~~~~~~V~~~ 101 (231)
T 2pjq_A 27 HSGHGRDHLQRVNRLARRLAKDEGANL---NLTLAAAWLHDVID--DKLMANPAKAHQDLIVQLNAQNVTADDQTAIFAI 101 (231)
T ss_dssp CSSCSHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHHHHHC-----------CHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHcCCc--ccCCChHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 345568999999999999999877763 45677777643211 10111223445788888888898875 8888
Q ss_pred HHhhcCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002254 690 LLEINLPRFSGDVLPKTDVGTVLAVADRLDTL 721 (947)
Q Consensus 690 I~EhYlPr~agD~LP~s~~G~iLslADKlDtL 721 (947)
|..|=.+..-++.-|.+..+.+|..||+||.|
T Consensus 102 I~~Hs~~~~~~~~~~~~~ea~Iv~dAD~LDal 133 (231)
T 2pjq_A 102 IDHMSFSKSFNGPQKLSLEGQVVQDADRLDAI 133 (231)
T ss_dssp HTSCCTGGGGGCCCCCCSHHHHHHHHHHHTTS
T ss_pred HHHcCCccccCCCCCCCHHHHHHHHHHHHHhh
Confidence 98885555444467899999999999999986
No 13
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=94.17 E-value=0.13 Score=55.53 Aligned_cols=111 Identities=20% Similarity=0.305 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCCCCCccccceeeeEEE--EcCCCcchH---HHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccc
Q 002254 3 VEPSIRPDDSRYGENPNRLQRHTQFQVI--LKPDPGNSQ---DLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGW 77 (947)
Q Consensus 3 v~p~~rp~d~ryg~npnrl~~~~q~qvi--~kp~p~~~~---~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gw 77 (947)
+.++-|+..+- ..|+..++|.=+. -+|++.+.. .++-.-|++||++ +.+|++...|- +|-+.
T Consensus 155 iG~vFR~E~~~----~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~----~~~~~~~s~e~-----~~~~~ 221 (288)
T 3dsq_A 155 IGTCYRKESQG----AQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR----EFELVTESSVV-----YGDTV 221 (288)
T ss_dssp EEEEECSCCSS----SCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCC----CCEEEECCCCS-----SCCCE
T ss_pred EeeEEecCCCC----CCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCC----CcEEecCCcce-----EEEEE
Confidence 34455655431 2345567776443 466555444 3455668899984 58999976653 35556
Q ss_pred eeeecCeeeeeeehhh----hccCcccccceeehhhhHHHHHHHHhCCCccceee
Q 002254 78 EIWMDGMEITQFTYFQ----QAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQ 128 (947)
Q Consensus 78 evw~~gmeitq~tyfq----q~gg~~~~~~~~e~tygler~~~~~q~~~~~~~~~ 128 (947)
.++++|.||--+-.=- .-.|++. |+.+ .--|||||+|.+.|++|+-++.
T Consensus 222 ~l~~~~~eig~~Gv~p~vl~~~~gi~~-~~~g-fglglerl~m~~~g~~~iR~~~ 274 (288)
T 3dsq_A 222 DVMKGDLELASGAMGPHFLDEKWEIFD-PWVG-LGFGLERLLMIREGTQHVQSMA 274 (288)
T ss_dssp EEEETTEEEEEEEEESCTTTTTTTCCS-CEEE-EEEEHHHHHHHHHTCSCGGGGS
T ss_pred EEEeCCEEEEEEEecHHHHHHhcCCCC-CeEE-EEECHHHHHHHHcCCchhhcCC
Confidence 6777888877554111 2234443 4444 5678999999999999999875
No 14
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=94.03 E-value=0.042 Score=65.27 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=76.0
Q ss_pred ChHHHHHHHhhhhhcccCC-CCCCc--cCCCcccCCCHHHHHHHHHHHHHhhhcCCCC---ChhHHHHHHHhhchHHhhh
Q 002254 834 LFPKVVEAYSRPTRIVRGK-DVDTA--LEVDETAFETIEEKALWTVYLSAKNKIHPGI---NVDDFIEISSELVQPLEDF 907 (947)
Q Consensus 834 ~f~~l~~a~kRv~NIlkk~-~~~~~--~~vd~~lf~~~~E~~L~~~~~~~~~~~~~~~---~~~~y~~al~~L~~~Id~F 907 (947)
...-|.-|+.|+..|++|. +.... ...+..++.+++|++|...+......+..+. ........|-.|....+.|
T Consensus 485 t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~fn~f 564 (607)
T 1f7u_A 485 TGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSC 564 (607)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3346778899999999875 21100 1234567889999999988765544443222 2223334456788999999
Q ss_pred hccccccCCcHHHHHHHHHHHHHHHHhhhhcc
Q 002254 908 FNHVFVMVEEERIRKNRLALLKKIADLPKGIV 939 (947)
Q Consensus 908 FD~VmVm~eD~~IR~NRLaLL~~i~~lf~~ia 939 (947)
+++.-|..+|+++|+.||+|...++..+..-.
T Consensus 565 Y~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL 596 (607)
T 1f7u_A 565 YDVLWVAGQTEELATARLALYGAARQVLYNGM 596 (607)
T ss_dssp HHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988776544
No 15
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=93.19 E-value=0.14 Score=53.34 Aligned_cols=101 Identities=22% Similarity=0.166 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcchhhhhcChhhhhHHHHHHHHhCCCCH----HHHHHH
Q 002254 615 LGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQ----QIAEAL 690 (947)
Q Consensus 615 LGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~----~VA~AI 690 (947)
-|-=++-+.|+..+|..||...+.+. ..+.-||.|=- +...-...=++....|.+......|-++ .|+.+|
T Consensus 23 ~~H~~~H~~rV~~~a~~ia~~~~~d~---~~l~~AAlLHD--ig~~k~~~h~~~ga~~a~~~L~~~g~~~~~i~~V~~~I 97 (223)
T 3djb_A 23 SGHDWYHIRRVHKMAISLSEQEGGNR---FIIEMAALLHD--VADEKLNESEEAGMKKVSDWLEELHVEEEESKHVLHII 97 (223)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTTCSCH---HHHHHHHTTHH--HHC--CCSSSTTTHHHHHHHHHHTCCCHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhh--ccccccCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45678999999999999998777663 45677777643 3321111224445568888888899998 688888
Q ss_pred HhhcCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002254 691 LEINLPRFSGDVLPKTDVGTVLAVADRLDTL 721 (947)
Q Consensus 691 ~EhYlPr~agD~LP~s~~G~iLslADKlDtL 721 (947)
..|=....-++. |.|..+.+|.-|||||.|
T Consensus 98 ~~Hs~~~~~~~~-p~tlea~iV~dADrLDal 127 (223)
T 3djb_A 98 ANMSYKGGHGGK-VESIEGKLVQDADRLDAL 127 (223)
T ss_dssp TCCC------------HHHHHHHHHHHTTTS
T ss_pred HHhCCccCCCCC-CCCHHHHHHHhHHHHHHH
Confidence 888332222223 999999999999999954
No 16
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=92.95 E-value=0.65 Score=49.69 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=62.0
Q ss_pred hhhhHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCCCCCChhhhhHHHHH
Q 002254 667 SLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYG 746 (947)
Q Consensus 667 ELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlDtLvG~F~iG~~PTGS~DPfALRRaAlG 746 (947)
...+.+|...++.-|.+++++++|..|..|...++.. ...+.+|++||.++...+ +.+||.+ ..+..
T Consensus 198 ~~H~~iGa~ll~~w~lp~~i~~aI~~Hh~~~~~~~~~--~~~a~iv~lAd~~~~~~~----------~~~~~~~-~~a~~ 264 (297)
T 1vqr_A 198 VDHISFLGFLLHRWNFDDVLIESICFVRTPHAAREKV--KKSAYALAITDHLFAPHD----------GSSPFNA-KAAVA 264 (297)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHTTTCGGGSCTTT--HHHHHHHHHHHHHHCTTT----------TTCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHhcChhhccccc--cHHHHHHHHHHHHHHHhC----------CCCccch-HHHHH
Confidence 4578899999999999999999999999997665433 468999999999975433 4568764 34555
Q ss_pred HHHHHHhCCCCCCHHHHH
Q 002254 747 LVQILIEKDKNLDLELAL 764 (947)
Q Consensus 747 IirIl~e~~~~l~L~~li 764 (947)
+++-+-..+..+|-..+.
T Consensus 265 ~l~~~g~~~~~~d~~~l~ 282 (297)
T 1vqr_A 265 LLKEAKTQGINFDLNNLL 282 (297)
T ss_dssp HHHHHHHTTCCCCHHHHH
T ss_pred HHHHhCccccCCCHHHHH
Confidence 555433355667766443
No 17
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=92.75 E-value=0.087 Score=60.68 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=63.7
Q ss_pred HHhhhhhcccCCCCCC--ccCCCcccCCCHHHHHHHHHHHHHhhhcCCCC---ChhHHHHHHHhhchHHhhhhccccccC
Q 002254 841 AYSRPTRIVRGKDVDT--ALEVDETAFETIEEKALWTVYLSAKNKIHPGI---NVDDFIEISSELVQPLEDFFNHVFVMV 915 (947)
Q Consensus 841 a~kRv~NIlkk~~~~~--~~~vd~~lf~~~~E~~L~~~~~~~~~~~~~~~---~~~~y~~al~~L~~~Id~FFD~VmVm~ 915 (947)
++.|+.+|+++..... ....+.+.+.++ |+.|...+.+..+.+..+. ........+-.|....+.|+++.-|..
T Consensus 343 a~aRi~silrk~~~~~~~~~~~~~~~L~~~-e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl~ 421 (464)
T 3fnr_A 343 AHARIHQVFAKAGKKIDDVMKADLQSLNQD-GVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVG 421 (464)
T ss_dssp HHHHHHHHHHHTTCCTTTSTTCCCTTCCHH-HHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHhhccCCCccccChhhCChH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 5778888887653110 012355667777 9999888876655554332 223344455677889999999999998
Q ss_pred CcHHHHHHHHHHHHHH
Q 002254 916 EEERIRKNRLALLKKI 931 (947)
Q Consensus 916 eD~~IR~NRLaLL~~i 931 (947)
+++++++.||+|...+
T Consensus 422 ~~~~~~~aRL~L~~a~ 437 (464)
T 3fnr_A 422 SANENDLLKLFSLVAL 437 (464)
T ss_dssp STTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8889999999999887
No 18
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=92.30 E-value=0.076 Score=62.79 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=73.9
Q ss_pred ChHHHHHHHhhhhhcccCCCCCCccCCCcccCCCHHHHHHHHHHHHHhhhcCCCC---ChhHHHHHHHhhchHHhhhhcc
Q 002254 834 LFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGI---NVDDFIEISSELVQPLEDFFNH 910 (947)
Q Consensus 834 ~f~~l~~a~kRv~NIlkk~~~~~~~~vd~~lf~~~~E~~L~~~~~~~~~~~~~~~---~~~~y~~al~~L~~~Id~FFD~ 910 (947)
...-+.-++.|+..|++|.... ... +. .+.++.|.+|...+....+.+..++ ........+-+|....+.|+++
T Consensus 469 ~~~ylqya~aR~~sil~k~~~~-~~~-~~-~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~yl~~La~~fn~fy~~ 545 (592)
T 1iq0_A 469 TGPYVQYAHARAHSILRKAGEW-GAP-DL-SQATPYERALALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNA 545 (592)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCC-CCC-CG-GGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhccc-CCC-cc-CCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4445667889999999875311 111 22 3568899999887766655554333 2333444456788999999999
Q ss_pred c-------cccCCcHHHHHHHHHHHHHHHHhhhhccc
Q 002254 911 V-------FVMVEEERIRKNRLALLKKIADLPKGIVD 940 (947)
Q Consensus 911 V-------mVm~eD~~IR~NRLaLL~~i~~lf~~iaD 940 (947)
. -|+.+|+++++.||+|...+...+....+
T Consensus 546 ~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~ 582 (592)
T 1iq0_A 546 RENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLD 582 (592)
T ss_dssp EETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999998887765544
No 19
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=92.12 E-value=0.034 Score=67.35 Aligned_cols=86 Identities=26% Similarity=0.418 Sum_probs=58.7
Q ss_pred hcCCCCCCCceeeecCCCCCcccccccccceeeecCeeeeeeehhhh---------------ccC-c-ccccceeehhhh
Q 002254 48 ALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQ---------------AGS-L-QLSPVSVEITYG 110 (947)
Q Consensus 48 ~~g~~~~~~dirfved~we~p~lga~g~gwevw~~gmeitq~tyfqq---------------~gg-~-~~~~~~~e~tyg 110 (947)
.+||++. .|.+ +|||-+-- |--|==-|+-.||+||==.-+.|- .+| + +|.--++---+|
T Consensus 177 ~~gl~~~--ri~~-~dNfW~~G-GpcGPcsEI~~dglEiwNlVFmq~~~~~~~~~~~~~~~~~~g~~~~Lp~~~IDTGmG 252 (752)
T 2zze_A 177 ELXMXPE--DITF-KENPWAGG-GNAGPAFEVLYRGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYG 252 (752)
T ss_dssp TSCCCGG--GEEE-EECCEEET-TEEECEEEEEETTEEEEEEEEEEEEECCTTCCSCCEEETTTEEEEEEEEEEEEEEEE
T ss_pred hhhcchh--heee-ccCcccCC-CCCCCceeEEECCEeeeeeeeeeeccccccccccchhcccCCeeeeCCccccccccC
Confidence 3787443 3544 67765544 777777999999999954333332 122 1 233334555699
Q ss_pred HHHHHHHHhCCCccceeeeCC---------CCceec
Q 002254 111 LERILMLLQGVDHFKKIQYAD---------GITYGE 137 (947)
Q Consensus 111 ler~~~~~q~~~~~~~~~~~~---------~~~y~~ 137 (947)
|||||+.|||+.|.||..+.+ +++||+
T Consensus 253 lERl~~vlQg~~snydt~f~pii~~~~~~~g~~y~~ 288 (752)
T 2zze_A 253 LERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKID 288 (752)
T ss_dssp HHHHHHHHHCCSSHHHHHSHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999986654 677874
No 20
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=92.12 E-value=0.83 Score=48.48 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcch-----------------------hhhhc-ChhhhhH
Q 002254 616 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLAT-----------------------SVVME-FTSLAGV 671 (947)
Q Consensus 616 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T-----------------------~MV~E-FPELQGi 671 (947)
..++..+.++..+|..||..++.+.+ .+--|+.|.-..-.- ..=.| |--..+.
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~~~~---~~~~agLLhdiGkl~l~~~~p~~~~~i~~~~~~~~~~~~~E~~~lg~~H~~ 180 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLPE---EAFTCGILHSIGELLIVNGDPAVAATISAAVADGADRNLMEKELLGYDNAE 180 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHH---HHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHTTCCHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHHHHccHHHHHHHCHHHHHHHHHHHhCCCCHHHHHHHHHCCCHHH
Confidence 35788999999999999999988643 345555544333211 00011 1124678
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHh
Q 002254 672 MACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGL 724 (947)
Q Consensus 672 MG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlDtLvG~ 724 (947)
+|.+.+++-|-|+++++||..|..|...+ +.+....+|.+||.++...+.
T Consensus 181 vGa~ll~~W~lp~~i~~aI~~Hh~~~~~~---~~~~l~~iv~lAd~i~~~~~~ 230 (275)
T 3m1t_A 181 IGALLAQSWKFTPHLVKGIQFQNHPKSAE---PYSKLAGMLAMAKQIAADWDK 230 (275)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTTCGGGCS---SCCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHCCCCHHHHHHHHHhCChhhcC---CccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999996543 346789999999999886554
No 21
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=91.52 E-value=0.92 Score=48.18 Aligned_cols=101 Identities=7% Similarity=-0.049 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHhhhhhcchh--hh--------------hcChhhhhHHHHH
Q 002254 616 GTMLDKTMRVQNMVRKLSLDL----GINEDMLQIVQEAASLAMSDLATS--VV--------------MEFTSLAGVMACH 675 (947)
Q Consensus 616 GSl~DK~~Ri~~La~~La~~l----~~~~~~~~~~~RAA~L~KaDL~T~--MV--------------~EFPELQGiMG~~ 675 (947)
..++..+.++..+|..||..+ +.+..+.+.+--|+.|.-.+..-- .. ..+....+.+|.+
T Consensus 116 ~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~~~~laGLLHdiGkl~l~~~~~~~~~~l~~~~~~~~~~~~~H~~iGa~ 195 (281)
T 3i7a_A 116 DEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPVLTEAEAHPEMFTTIEHLRSLVRKMQGPIGRA 195 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHCCHHHHHHhHHhhHHHhcChHHHHHHHhCcHHHHHHH
Confidence 347888899999999999987 333323445667777765553210 01 2234468889999
Q ss_pred HHHhCCCCHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHH
Q 002254 676 YALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLD 719 (947)
Q Consensus 676 YA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlD 719 (947)
.+++-|.+++++.+|..|.-|...+ +.+....+|.+||.+.
T Consensus 196 ll~~w~lp~~i~~ai~~Hh~~~~~~---~~~~~~~iV~lAd~~~ 236 (281)
T 3i7a_A 196 VLKSWDFAPEVMEVVERWADLPYLG---DHVSYLDFIRAAAFYT 236 (281)
T ss_dssp HHHHTTCCHHHHHHHHHTTCTTCCC---SSCCHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHcChhhcC---CcCCHHHHHHHHHHHc
Confidence 9999999999999999999987643 3467899999999953
No 22
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=91.16 E-value=0.092 Score=62.61 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=72.8
Q ss_pred HHHHHHHhhhhhcccCCCCCCc--------cCCCcccCCCHHHHHHHHHHHHHhhhcCCCC---ChhHHHHHHHhhchHH
Q 002254 836 PKVVEAYSRPTRIVRGKDVDTA--------LEVDETAFETIEEKALWTVYLSAKNKIHPGI---NVDDFIEISSELVQPL 904 (947)
Q Consensus 836 ~~l~~a~kRv~NIlkk~~~~~~--------~~vd~~lf~~~~E~~L~~~~~~~~~~~~~~~---~~~~y~~al~~L~~~I 904 (947)
.-+.=++.|+..|++|...... ...+. .+.++.|.+|...+......+..++ ........+-.|....
T Consensus 505 ~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~-~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p~~l~~yl~~La~~f 583 (629)
T 2zue_A 505 PYIQYAHARCSSILRKAEEEGIKVDPETLFKNADF-TKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLF 583 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCC-SSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccc-cCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3455678888888876421100 00111 3568999999988877665554332 3334445567888999
Q ss_pred hhhhccccccCCcHHHHHHHHHHHHHHHHhhhhccc
Q 002254 905 EDFFNHVFVMVEEERIRKNRLALLKKIADLPKGIVD 940 (947)
Q Consensus 905 d~FFD~VmVm~eD~~IR~NRLaLL~~i~~lf~~iaD 940 (947)
+.|+++.-|+.+|+++++.||+|...+...+..-.+
T Consensus 584 n~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~ 619 (629)
T 2zue_A 584 NKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALY 619 (629)
T ss_dssp HHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887765444
No 23
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=89.75 E-value=1.3 Score=45.84 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHhhhhhcchhhhhcChhhhhHHHHHHHHhCCCCHH----HHHH
Q 002254 615 LGTMLDKTMRVQNMVRKL-SLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQ----IAEA 689 (947)
Q Consensus 615 LGSl~DK~~Ri~~La~~L-a~~l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~GE~~~----VA~A 689 (947)
-+--++-+.|+..+|..| |...+.+. ..+.-||.|=-+--.. .. =++..-.+++......|-+++ |+.+
T Consensus 23 ~~H~~~H~~rV~~~a~~i~a~~~~~d~---~~l~lAAlLHDigk~~--~~-~~~~ga~~a~~~L~~~g~~~~~i~~V~~~ 96 (225)
T 2qgs_A 23 TGHDIAHVERVYNNACYIAKRENITDT---LVIELSSLLHDTVDSK--LT-DEILAYDQLKQFLSTLDLSSEISQQVLYI 96 (225)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCSCC---HHHHHHHHHTTTTCCS--SS-CHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHhhccCCCH---HHHHHHHHHHcCCCCC--CC-cHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 344689999999999999 88777663 3567777764321110 01 023333466667777788874 9999
Q ss_pred HHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002254 690 LLEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 722 (947)
Q Consensus 690 I~EhYlPr~agD~LP~s~~G~iLslADKlDtLv 722 (947)
|.-|=.+..-++.-|.|..+.+|..||+||.|-
T Consensus 97 I~~Hs~~~~~~~~~~~~~e~~Iv~dAD~LDalG 129 (225)
T 2qgs_A 97 IKHMSYRAGKNNHVKLSIDGEIVRDADRLDAIG 129 (225)
T ss_dssp HHTTC-------CCCCCHHHHHHHHHHHHTTSH
T ss_pred HHHcCcccCCCCCCCCCHHHHHHHhhHHHHHhh
Confidence 998855544344678999999999999999864
No 24
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=89.28 E-value=0.36 Score=55.05 Aligned_cols=102 Identities=31% Similarity=0.369 Sum_probs=60.8
Q ss_pred CCCCCCcccc-ceeeeEEEEcCCCcchHHHHHHHHHhcCCCCCCCceee--------ecCCCC-Ccccccccccceeeec
Q 002254 13 RYGENPNRLQ-RHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRF--------VEDNWE-SPVLGAWGLGWEIWMD 82 (947)
Q Consensus 13 ryg~npnrl~-~~~q~qvi~kp~p~~~~~~yl~sl~~~g~~~~~~dirf--------ved~we-~p~lga~g~gwevw~~ 82 (947)
-||-.|+||+ .+|. +| .|-|===++.+|++. +|=+|| .+|||= .=--|--|===|+-.|
T Consensus 119 ~lgl~~erL~vTvf~---------~D-~Ea~~iW~~~~Gvp~-~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD 187 (441)
T 3hy0_A 119 WFALPKERLWVTVYE---------SD-DEAYEIWEKEVGIPR-ERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYD 187 (441)
T ss_dssp TTCCCGGGEEEEEET---------TC-HHHHHHHHHTTCCCG-GGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEE
T ss_pred ccCCCHHHeEEEEeC---------CC-HHHHHHHHHccCCCH-HHeeecCccccccccccCchhcCCCcCCcCCeeEEEe
Confidence 4899999996 3331 12 232222344678854 455666 578853 2222444444555555
Q ss_pred -------------------Ceee-----eeeehhhhccC-c-ccccceeehhhhHHHHHHHHhCCCcccee
Q 002254 83 -------------------GMEI-----TQFTYFQQAGS-L-QLSPVSVEITYGLERILMLLQGVDHFKKI 127 (947)
Q Consensus 83 -------------------gmei-----tq~tyfqq~gg-~-~~~~~~~e~tygler~~~~~q~~~~~~~~ 127 (947)
.+|| +||. +..+| + +|.--++---+||||||+.||||.|+||.
T Consensus 188 ~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~--r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYdt 256 (441)
T 3hy0_A 188 HGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFN--RQADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDI 256 (441)
T ss_dssp CCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEE--ECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGS
T ss_pred cCcccCCCCCCCCCCCCCCeEEEeeeeeeeee--ecCCCccccCCCCceecCCCHHHHHHHHcCCCccccc
Confidence 2665 4443 23344 1 33334456669999999999999999987
No 25
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=88.75 E-value=0.44 Score=50.26 Aligned_cols=121 Identities=20% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcchhh---hhcChhhhhHHHHHHHHh--CCCCHH----H
Q 002254 616 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSV---VMEFTSLAGVMACHYALR--DGYSQQ----I 686 (947)
Q Consensus 616 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~M---V~EFPELQGiMG~~YA~~--~GE~~~----V 686 (947)
|--++-+.|+..+|..||...+.+. +.+.-||.|--.-....- -....++-..+.+.+... .|-+++ |
T Consensus 24 ~H~~~H~~rV~~~a~~ia~~~~~d~---~~~~~AalLHDig~~~~~~~~~~~H~~~ga~~A~~~L~~~~~g~~~e~i~~V 100 (239)
T 3gw7_A 24 AHDVCHFRRVWATAQKLAADDDVDM---LVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAV 100 (239)
T ss_dssp ---CCHHHHHHHHHHHHTTTSCSCT---THHHHHHHHTTTTC--------CCSSHHHHHHHHHHHHHHTTSSCTTTTTST
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhhcccccccCCccccHHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 3346889999999999998877664 357788887433111000 011233444456666666 777754 9
Q ss_pred HHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHH-----HHHhhhcC----CCCCCCCChhhhhH
Q 002254 687 AEALLEINLPRFSGDVLPKTDVGTVLAVADRLDT-----LVGLFAAG----CQPSSTNDPFGLRR 742 (947)
Q Consensus 687 A~AI~EhYlPr~agD~LP~s~~G~iLslADKlDt-----LvG~F~iG----~~PTGS~DPfALRR 742 (947)
+.+|..|= ++++.-|.|..+.+|.-|||||. +.=+|..| ..--...|||+..|
T Consensus 101 ~~~I~~Hs---~~~~~~p~t~Ea~IV~DADrLDalGAiGIaR~f~y~g~~~~~l~~p~~~~~~~r 162 (239)
T 3gw7_A 101 CHAIAAHS---FSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQHR 162 (239)
T ss_dssp TTGGGSSC---TTSCCCCCSHHHHHHHHHTGGGGSHHHHHHHHHHHHHHTTCCCSGGGGGGGTSC
T ss_pred HHHHHHcC---CCCCCCCCChHHHHHHhHHHHHHhhchhHHHHHHHHHHhCCccCCCcchhhhhh
Confidence 99999984 33446799999999999999996 44456443 22233457776554
No 26
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=85.75 E-value=2.4 Score=45.27 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcch----------hhh----------hc---ChhhhhHHH
Q 002254 617 TMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLAT----------SVV----------ME---FTSLAGVMA 673 (947)
Q Consensus 617 Sl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T----------~MV----------~E---FPELQGiMG 673 (947)
.++..+.++..+|..||..++.+. .+.+--|+.|.-....- .+. .| |....+.+|
T Consensus 108 ~~~~hs~~~A~~a~~la~~~~~~~--~~~~~~agLLhdiGkl~l~~~~p~~~~~il~~~~~~~l~~~E~~~lg~~H~~vG 185 (288)
T 3ljx_A 108 AYWQKSLARAVALQSITAQASTVA--PKEAFTLGLLADVGRLALATAWPEEYSECLRKADGEALIALERERFATDHDELT 185 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSC--HHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHccCHHHHH
Confidence 478889999999999999988753 23455566665443221 110 01 113366799
Q ss_pred HHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002254 674 CHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLV 722 (947)
Q Consensus 674 ~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlDtLv 722 (947)
...+++-|.|+++++||..|..|.... .-..+....+|.+||++....
T Consensus 186 a~ll~~W~lp~~i~~aI~~Hh~p~~~~-~~~~~~l~~iv~lAd~la~~~ 233 (288)
T 3ljx_A 186 RMLLTDWGFPQVFIDALQLSQQDEIRD-EGRTGRFARQLALAQHIADHR 233 (288)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTSSCCCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHcCccccc-ccchhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999997541 111245788999999997763
No 27
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=84.00 E-value=2.5 Score=45.25 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCCCCccccceeeeEEEEc---CCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee
Q 002254 3 VEPSIRPDDSRYGENPNRLQRHTQFQVILK---PDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI 79 (947)
Q Consensus 3 v~p~~rp~d~ryg~npnrl~~~~q~qvi~k---p~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev 79 (947)
+-|+-|+.+.+. -|...++|.=+.+= -+-.++..+.-.-|+.+|++ .+|.++.|.-|- -+-+|
T Consensus 161 iG~vFR~E~~~~----~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~lGl~-----~~~~~~~~~hpg-----r~a~i 226 (290)
T 3qtc_A 161 IGPCYRKESDGK----EHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGID-----FKIVGDSCMVFG-----DTLDV 226 (290)
T ss_dssp EEEEECCCSCSS----SCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCC-----CEEEC------C-----EEEEE
T ss_pred EcCEEecCCCCC----cCcchheEEEEEEEcCChHHHHHHHHHHHHHHHcCCC-----cEEeCCCccccC-----CcccE
Confidence 445667665432 34556666554442 12345666677778999984 677777777664 34456
Q ss_pred eecCeee--eeee--hhhhccCcccccceeehhhhHHHHHHHHhCCCccceee
Q 002254 80 WMDGMEI--TQFT--YFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQ 128 (947)
Q Consensus 80 w~~gmei--tq~t--yfqq~gg~~~~~~~~e~tygler~~~~~q~~~~~~~~~ 128 (947)
+++|.|| -++- ..|..-|++-.....|| |||||+|...+++++-++-
T Consensus 227 ~~~~~~iG~G~lhP~vl~~~~~i~~~v~~~el--~le~l~~~~~~~~dir~~~ 277 (290)
T 3qtc_A 227 MHGDLELSSALVGPIPLDREWGIDKPWIGAGF--GLERLLKVKHDFKNIKRAA 277 (290)
T ss_dssp EETTEEEEEEEESCCGGGGGGTCCSCEEEEEE--EHHHHHHHHHTCSSGGGGS
T ss_pred eeCCEEEEEEEecHHHHHHhCCCCCceEEEEE--CHHHHHHHHcCCcHHHHHh
Confidence 6677666 2221 11134456655566665 7999999999999888764
No 28
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=83.85 E-value=7.6 Score=44.31 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCh-hHHHHHHHHHHhhhhhcch-----------------------hhhhc---Ch
Q 002254 614 KLGTMLDKTMRVQNMVRKLSLDLGINE-DMLQIVQEAASLAMSDLAT-----------------------SVVME---FT 666 (947)
Q Consensus 614 kLGSl~DK~~Ri~~La~~La~~l~~~~-~~~~~~~RAA~L~KaDL~T-----------------------~MV~E---FP 666 (947)
.+..++..+.+...++..||..++.+. .+.+.+--|+.|.-.-..- ..-.| |-
T Consensus 275 ~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~aflaGLLhDIGkl~l~~~~p~~~~~i~~~~~~~~~~~~~~~E~~~lg 354 (457)
T 3mem_A 275 GYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLAQVFPPHFKLVCRSLEVSPHIDSSVIEHYLLG 354 (457)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHHHHHHHTTTHHHHHHHHSHHHHHHHHHHHHHCTTSCHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHHHHHHCHHHHHHHHHHHHhcCCCCHHHHHHHHHc
Confidence 456799999999999999999987531 1123344455443221110 00111 12
Q ss_pred hhhhHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCC
Q 002254 667 SLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGC 729 (947)
Q Consensus 667 ELQGiMG~~YA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlDtLvG~F~iG~ 729 (947)
.-.+.+|.+.+++=|.|++++++|..|..|..++ +.+....+|.+||.+ +..+++|.
T Consensus 355 ~~H~~vGa~Ll~~W~lP~~i~~aI~~HH~p~~~~---~~~~l~~iV~lAd~l---~~~~~~g~ 411 (457)
T 3mem_A 355 ITREQIAAQLMENWGMPDEVTLAIRYQKNPAYDG---PHNVYARLLWLGRQL---LTERGVAL 411 (457)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHTTCTTCCS---TTHHHHHHHHHHHHH---HHHTTCSS
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHhcCccccC---cccHHHHHHHHHHHH---HHHcCCCC
Confidence 2356789999999999999999999999998754 235788899999876 44455554
No 29
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=81.06 E-value=0.52 Score=54.07 Aligned_cols=79 Identities=34% Similarity=0.545 Sum_probs=51.2
Q ss_pred HHhcCCCCCCCceeee-cCC-CCCcccccccccceeeec-C---------eee-----eeeehhhhccC--cccccceee
Q 002254 46 LSALGIDVTEHDIRFV-EDN-WESPVLGAWGLGWEIWMD-G---------MEI-----TQFTYFQQAGS--LQLSPVSVE 106 (947)
Q Consensus 46 l~~~g~~~~~~dirfv-ed~-we~p~lga~g~gwevw~~-g---------mei-----tq~tyfqq~gg--~~~~~~~~e 106 (947)
++.+|++ .+|=+|+= +|| |+.---|--|==-|+-.| | +|| +||. +..+| .+|.--++-
T Consensus 142 ~~~~G~p-~~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~~~r~lEIWNlVFmQy~--r~~~g~l~pLp~k~ID 218 (465)
T 1yfs_A 142 NEHIGIP-SERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEGDERYLEIWNLVFMQYN--RDENGVLTPLPHPNID 218 (465)
T ss_dssp HTTTCCC-GGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSCHHHHEEEEEEEEEEEEE--ECTTSCEEEEEEEEEE
T ss_pred HHhcCCC-HHHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCCCCCCEEEeeeeeeeEEE--ecCCCccccCCCCcee
Confidence 3456763 34545542 566 554435667777888888 7 787 3432 22233 233334556
Q ss_pred hhhhHHHHHHHHhCCCcccee
Q 002254 107 ITYGLERILMLLQGVDHFKKI 127 (947)
Q Consensus 107 ~tygler~~~~~q~~~~~~~~ 127 (947)
--+||||||+.||||.|.||.
T Consensus 219 TGmGLERla~vlQg~~snYdt 239 (465)
T 1yfs_A 219 TGMGLERIASVLQGKNSNFEI 239 (465)
T ss_dssp EEEEHHHHHHHHTTCSSGGGS
T ss_pred cCcCHHHHHHHHcCCCccchh
Confidence 669999999999999999998
No 30
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=80.19 E-value=2 Score=44.03 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=74.7
Q ss_pred HHHhcccCcccccC-----CCCHHHHHHHHHHHHHHHH----HHhC--CChhHHHHHHHHHHhhhhhcchhhhhcChhhh
Q 002254 601 DFQGQLKGILFHEK-----LGTMLDKTMRVQNMVRKLS----LDLG--INEDMLQIVQEAASLAMSDLATSVVMEFTSLA 669 (947)
Q Consensus 601 ~~v~kLk~VvF~~k-----LGSl~DK~~Ri~~La~~La----~~l~--~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQ 669 (947)
..+.+||.|.=... ==|+.+.+-|+..+|..+| +.++ ++ ...+.++|.+ -|+.--.+++.|.-.
T Consensus 10 ~~~~rLK~i~R~~~~~~~~~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD---~~~~~~~aLl--HDi~E~~~GDi~~p~ 84 (201)
T 2paq_A 10 AHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVN---AERIALLAMY--HDASEVLTGDLPTPV 84 (201)
T ss_dssp HHHGGGGGCBSCTTSCCSSCCBHHHHHHHHHHHHHHHHHHHHHHSCCCCC---HHHHHHHHHH--TTTTHHHHCCCCCC-
T ss_pred HHHHhhccCccCCCCCCCCCccHHHHHHHHHHHHHHHHhhhHHhcCcccC---HHHHHHHHHh--cccccccCCCCCchH
Confidence 34555555432222 4689999999999999999 6664 44 4467788877 477777777765322
Q ss_pred ----hHHHHHH---------HHhCCCCHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHhh
Q 002254 670 ----GVMACHY---------ALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLF 725 (947)
Q Consensus 670 ----GiMG~~Y---------A~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlDtLvG~F 725 (947)
+.++..| +...+.|++.+..+.+|+.+ .. |+|+.+.++.-||||+.+.=++
T Consensus 85 k~~~~~~~~~~~~~E~~~~~~i~~~Lp~~~~~e~~~l~~e----~e-~~t~ea~lvk~aD~l~a~lqa~ 148 (201)
T 2paq_A 85 KYFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLIDE----HA-YSDEEKSLVKQADALCAYLKCL 148 (201)
T ss_dssp --------CTHHHHHHHHHHHHHTTSCGGGHHHHHHHHTT----TS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchHHHHHhcccHHHHHHHHHHhCCHHHHHHHHHHHhc----cc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 2222223 22344444455555577765 23 6899999999999999997665
No 31
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=73.32 E-value=1.4 Score=47.56 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.1
Q ss_pred ceeehhhhHHHHHHHHhCCCccceeeeCC
Q 002254 103 VSVEITYGLERILMLLQGVDHFKKIQYAD 131 (947)
Q Consensus 103 ~~~e~tygler~~~~~q~~~~~~~~~~~~ 131 (947)
.++=+--|+|||+|++.+.+||-|+.+=+
T Consensus 257 P~~G~glGieRL~mll~g~~~Irdvi~Fp 285 (294)
T 1nnh_A 257 PSAGAGIGVERLVRFIVGAKHIAEVQPFP 285 (294)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGGCSSC
T ss_pred CceEEEEcHHHHHHHHhCCCCHHHEEecc
Confidence 66678899999999999999999986543
No 32
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=72.32 E-value=8.9 Score=42.86 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=83.2
Q ss_pred hccccHhHHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcchhh-
Q 002254 583 RYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSV- 661 (947)
Q Consensus 583 RL~DA~FF~~~D~K~~L~~~v~kLk~VvF~~kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~M- 661 (947)
|+-|-..|=.--..+.| .+...+|+..-.|-++.+.++..+|..||..++++.+ +.+..||.|- |+.-..
T Consensus 21 ~ii~s~~fqRLr~i~Ql-----G~~~~v~p~a~~~r~~Hsl~V~~~a~~ia~~~~~~~~--~~~~~AaLLH--DiG~~pf 91 (371)
T 2hek_A 21 RLIDSFPFQRLRYVKQL-----GLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEK--ELVKLAGLLH--DLGHPPF 91 (371)
T ss_dssp HHHTSHHHHGGGGSBTT-----TTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTH--HHHHHHHHTT--TTTCCSS
T ss_pred HHhCCHHHhCccccCcc-----CccceeeCCCCCChhHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHH--hcCcccc
Confidence 45555555433333222 2334588777789999999999999999999998863 4567777774 322211
Q ss_pred --hhc----ChhhhhHHHHHHHHh-------CC-C-CHH---HHHHHHhhcCCCCCCCCCCCchhHHHHH---HHHHHHH
Q 002254 662 --VME----FTSLAGVMACHYALR-------DG-Y-SQQ---IAEALLEINLPRFSGDVLPKTDVGTVLA---VADRLDT 720 (947)
Q Consensus 662 --V~E----FPELQGiMG~~YA~~-------~G-E-~~~---VA~AI~EhYlPr~agD~LP~s~~G~iLs---lADKlDt 720 (947)
+.| ...-+..+|...|+. .. . +++ |+.+|..+.. .-|.+..+.+|+ =|||||.
T Consensus 92 sh~~e~~~~~g~~He~~g~~i~~~~~i~~iL~~~~~~~~i~~I~~~I~~~~~------~~~~~~l~~IVs~~lDaDRlDY 165 (371)
T 2hek_A 92 SHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPE------DEEEKLLSEIITGEFGSDRMDY 165 (371)
T ss_dssp SSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCS------SHHHHHHHHHHHSTTCHHHHHH
T ss_pred ccchHHHhccCCCHHHHHHHHHhcchHHHHHHHhCCHHHHHHHHHHHhcCCC------CcccchHHHHhcCCCCccccch
Confidence 111 112233445555442 11 2 233 7777776532 235677899999 8999998
Q ss_pred HH-HhhhcCCCCCCCCC
Q 002254 721 LV-GLFAAGCQPSSTND 736 (947)
Q Consensus 721 Lv-G~F~iG~~PTGS~D 736 (947)
|. -+|..| .+-|+-|
T Consensus 166 l~RDs~~~g-~~~g~~d 181 (371)
T 2hek_A 166 LRRDAYFCG-VSYGFFD 181 (371)
T ss_dssp HHHHHHHHT-CCSSCCC
T ss_pred hccchhhhc-CCcCCcC
Confidence 86 445555 3455433
No 33
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=63.27 E-value=17 Score=42.57 Aligned_cols=98 Identities=24% Similarity=0.418 Sum_probs=63.7
Q ss_pred ccccceeeeEEEEcCCCcchHHH---HHHHHHhcCCCCCCCceeeecCC----CCCcccccccccceeee----------
Q 002254 19 NRLQRHTQFQVILKPDPGNSQDL---FIRSLSALGIDVTEHDIRFVEDN----WESPVLGAWGLGWEIWM---------- 81 (947)
Q Consensus 19 nrl~~~~q~qvi~kp~p~~~~~~---yl~sl~~~g~~~~~~dirfved~----we~p~lga~g~gwevw~---------- 81 (947)
.+..+++|.=.++=-.+.++-++ --.-|+.||+ .++||+.++ |=.| |--|||++
T Consensus 224 th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~LGi----~~~r~~~~~~~~~~yhP-----gt~aeI~v~~~~~~g~~~ 294 (534)
T 2du3_A 224 TRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGF----ENFRFRKDEKRSKYYIP-----DTQTEVFAFHPKLVGSST 294 (534)
T ss_dssp SCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGGTC----CEEEEEECTTCCTTBCT-----TTCEEEEEEEEEEETCSS
T ss_pred cccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCC----CeEEEEECCCCcccccC-----CeEEEEEEEecccccccc
Confidence 35567778777765555555443 2333456786 379998763 1233 44488877
Q ss_pred ---cC-eeeeeeehh----hhccCcccccceeehhhhHHHHHHHHhCCCcccee
Q 002254 82 ---DG-MEITQFTYF----QQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKI 127 (947)
Q Consensus 82 ---~g-meitq~tyf----qq~gg~~~~~~~~e~tygler~~~~~q~~~~~~~~ 127 (947)
+| +||--|--+ .+--|++......|| |||||+|.+-+++++-++
T Consensus 295 ~~~~gW~eIG~~G~vhP~VL~~~gi~~~v~afeL--gLErLaMl~~gi~DIR~~ 346 (534)
T 2du3_A 295 KYSDGWIEIATFGIYSPTALAEYDIPYPVMNLGL--GVERLAMILYGYDDVRKM 346 (534)
T ss_dssp SCTEEEEEEEEEEEBCHHHHHTTTCCSCEEEEEE--EHHHHHHHHTTCSCHHHH
T ss_pred ccCCCCEEEEEEEEECHHHHHHcCCCCcEEEEEe--cHHHHHHhhcCCchhhhh
Confidence 67 888766433 234566654566665 899999999999988665
No 34
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=62.84 E-value=10 Score=43.90 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=61.6
Q ss_pred cccceeeeE--EEEcCCCcc-----hHHHHHHHHHhcCCCCCCCceeeec---CCCCCccccccc------ccce----e
Q 002254 20 RLQRHTQFQ--VILKPDPGN-----SQDLFIRSLSALGIDVTEHDIRFVE---DNWESPVLGAWG------LGWE----I 79 (947)
Q Consensus 20 rl~~~~q~q--vi~kp~p~~-----~~~~yl~sl~~~g~~~~~~dirfve---d~we~p~lga~g------~gwe----v 79 (947)
|+.+|+|.= +.+.|++.. +.++|..-++.|||+... +++.. |+-....-..|= .||. +
T Consensus 231 R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~i~~~LGl~~~~--v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~ 308 (505)
T 1ati_A 231 RVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSREN--LVPYQQPPESSAHYAKATVDILYRFPHGSLELEGI 308 (505)
T ss_dssp SCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGG--EEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEE
T ss_pred cccceEEeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEE--EEECCCChHhhhcccHHHHhHHhhcCCCCccchhh
Confidence 667777642 578888776 778899999999997643 66664 332101111121 1333 1
Q ss_pred eecCe-------------------------eeeeeehhhhccCcccccceeehhhhHHHHHHHHh
Q 002254 80 WMDGM-------------------------EITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQ 119 (947)
Q Consensus 80 w~~gm-------------------------eitq~tyfqq~gg~~~~~~~~e~tygler~~~~~q 119 (947)
. ++. +-+.|+|+-..||-...|+.++..+|+|||...|.
T Consensus 309 ~-~~~d~~L~~~~~~~~~~~~~~~~~~n~~~~~~~~y~d~~g~~~y~p~vig~s~GieRli~all 372 (505)
T 1ati_A 309 A-QRTDFDLGSHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALL 372 (505)
T ss_dssp E-ECTTHHHHHHCSSTTTTTCCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEEEHHHHHHHHH
T ss_pred h-cccceecchhhccccccceeeeecccccceeEEEEEcCCCCeeecceEEEEeeEHHHHHHHHH
Confidence 1 000 23457888777777768888899999999987665
No 35
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=56.43 E-value=5.8 Score=45.07 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=46.4
Q ss_pred cccccceeeecCeeee-----------eeehhhhccCcc------------cccceeehhhhHHHHHHHHhCCCccceee
Q 002254 72 AWGLGWEIWMDGMEIT-----------QFTYFQQAGSLQ------------LSPVSVEITYGLERILMLLQGVDHFKKIQ 128 (947)
Q Consensus 72 a~g~gwevw~~gmeit-----------q~tyfqq~gg~~------------~~~~~~e~tygler~~~~~q~~~~~~~~~ 128 (947)
...--||+-++|+||. |-.-|...|.-+ =-|.++=+--|+|||.|++-|.+||-|+.
T Consensus 332 ~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi 411 (422)
T 1n9w_A 332 GTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYAR 411 (422)
T ss_dssp SBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGC
T ss_pred CEEEEEEEEECCEEEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEE
Confidence 3577899999999985 666676665211 14778889999999999999999999986
Q ss_pred eC
Q 002254 129 YA 130 (947)
Q Consensus 129 ~~ 130 (947)
+=
T Consensus 412 ~F 413 (422)
T 1n9w_A 412 AF 413 (422)
T ss_dssp SC
T ss_pred ec
Confidence 54
No 36
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=50.84 E-value=56 Score=36.60 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhhcchh---------hhhcChhhhhH----HHHHHHHh---
Q 002254 616 GTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATS---------VVMEFTSLAGV----MACHYALR--- 679 (947)
Q Consensus 616 GSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~L~KaDL~T~---------MV~EFPELQGi----MG~~YA~~--- 679 (947)
=|-+..+-=+..+|..|+..+|+++ ..+++||.| -|+.-. +-..+.+-.|. +|.-.+..
T Consensus 74 ~tRl~HSl~Va~iar~ia~~l~l~~---~l~~~a~Ll--HDiGh~PFgH~~E~~l~~~~~~~ggf~Hn~~s~ril~~le~ 148 (376)
T 2dqb_A 74 RTRLTHTLEVAQVSRSIARALGLNE---DLTEAIALS--HDLGHPPFGHTGEHVLNALMQDHGGFEHNAQALRILTHLEV 148 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHH--TTTTCCSSTTHHHHHHHHHTTTTTCCCHHHHHHHHHHTTCB
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHH--HhcCCCccccchHHHHHHHhhccCCCcHHHHHHHHHHHHhh
Confidence 4778999999999999999999984 346677766 466543 11111111122 22222222
Q ss_pred -------CCCCHHHHHHHHhhcCCCCC--C--CCCCCchhHHHHHHHHHHHHHH
Q 002254 680 -------DGYSQQIAEALLEINLPRFS--G--DVLPKTDVGTVLAVADRLDTLV 722 (947)
Q Consensus 680 -------~GE~~~VA~AI~EhYlPr~a--g--D~LP~s~~G~iLslADKlDtLv 722 (947)
-+.+.++-.+|..|-.|... . -..|.+..+.++++||+||.++
T Consensus 149 ~~~~~~glnLt~~~l~~I~kh~~~~~~~~~~~~~~~~~le~~Iv~~AD~IaY~~ 202 (376)
T 2dqb_A 149 RYPGFRGLNLTYEVLEGIATHEAAYSPGFKPLYEGQGTLEAQVVDLSDAIAYAA 202 (376)
T ss_dssp CBTTBSBCCCCHHHHHHHHHSCC-----------CCSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHhCCCccchhhhhhcccCCChhhhHHHHHHHHHhcc
Confidence 12368999999999877531 0 1147788899999999999886
No 37
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=50.14 E-value=7.4 Score=39.95 Aligned_cols=46 Identities=28% Similarity=0.624 Sum_probs=39.8
Q ss_pred cCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccc--eeeecC
Q 002254 32 KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGW--EIWMDG 83 (947)
Q Consensus 32 kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gw--evw~~g 83 (947)
||.| +.|+.-++.+|+++ .++-||+|++.+=..||...|| =||+++
T Consensus 176 KP~p----~~~~~~~~~~~~~~--~~~~~vGDs~~~Di~~A~~aG~~~~i~v~~ 223 (260)
T 2gfh_A 176 KPAP----SIFYHCCDLLGVQP--GDCVMVGDTLETDIQGGLNAGLKATVWINK 223 (260)
T ss_dssp TTCH----HHHHHHHHHHTCCG--GGEEEEESCTTTHHHHHHHTTCSEEEEECT
T ss_pred CCCH----HHHHHHHHHcCCCh--hhEEEECCCchhhHHHHHHCCCceEEEEcC
Confidence 7777 68889999999986 5799999999999999999999 488754
No 38
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=50.00 E-value=10 Score=45.25 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=60.2
Q ss_pred cccccccceeeecCeeee-----------eeehhhhccCccc-------------ccceeehhhhHHHHHHHHhCCCccc
Q 002254 70 LGAWGLGWEIWMDGMEIT-----------QFTYFQQAGSLQL-------------SPVSVEITYGLERILMLLQGVDHFK 125 (947)
Q Consensus 70 lga~g~gwevw~~gmeit-----------q~tyfqq~gg~~~-------------~~~~~e~tygler~~~~~q~~~~~~ 125 (947)
+.+.+--|++.|||.||. |-.-|....|++- -|..+=+..|+|||.|.+-|.+|+-
T Consensus 481 ~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~ir 560 (617)
T 4ah6_A 481 KKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIR 560 (617)
T ss_dssp TSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGG
T ss_pred hhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchh
Confidence 367788999999999975 6677885556652 4778889999999999999999999
Q ss_pred eeeeCCC-Cceeccccc-----chhhhhcccccc
Q 002254 126 KIQYADG-ITYGELFLE-----NEKEMSAYYLEH 153 (947)
Q Consensus 126 ~~~~~~~-~~y~~~~~~-----~e~~~s~~~~~~ 153 (947)
|+.|=+. -+=-|+..+ ++.|-..|+...
T Consensus 561 dvi~fP~~~~~~d~~~~aP~~v~~~qL~el~i~~ 594 (617)
T 4ah6_A 561 DVIAFPKSFRGHDLMSNTPDSVPPEELKPYHIRV 594 (617)
T ss_dssp GSSSSCCCSSSCCSSSCCSBCCCGGGTTTTC---
T ss_pred eEEecCCCCCccccccCCCCCCCHHHHHhcCeee
Confidence 9988662 222244333 355566666544
No 39
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=47.32 E-value=8.4 Score=37.54 Aligned_cols=44 Identities=36% Similarity=0.623 Sum_probs=37.5
Q ss_pred cCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee-ee
Q 002254 32 KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WM 81 (947)
Q Consensus 32 kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev-w~ 81 (947)
||+| ++|..-++.+|+++ .++-||.|.|.+=..+|.-.||-+ |+
T Consensus 97 KP~p----~~~~~~~~~~~~~~--~~~l~VGD~~~~Di~~A~~aG~~~i~v 141 (189)
T 3ib6_A 97 KPDK----TIFDFTLNALQIDK--TEAVMVGNTFESDIIGANRAGIHAIWL 141 (189)
T ss_dssp TTSH----HHHHHHHHHHTCCG--GGEEEEESBTTTTHHHHHHTTCEEEEE
T ss_pred CcCH----HHHHHHHHHcCCCc--ccEEEECCCcHHHHHHHHHCCCeEEEE
Confidence 6665 68889999999865 679999999999999999999974 44
No 40
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=46.81 E-value=11 Score=43.63 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=46.2
Q ss_pred ccccceeeecCeeee-----------eeehhhhccCccc--------------ccceeehhhhHHHHHHHHhCCCcccee
Q 002254 73 WGLGWEIWMDGMEIT-----------QFTYFQQAGSLQL--------------SPVSVEITYGLERILMLLQGVDHFKKI 127 (947)
Q Consensus 73 ~g~gwevw~~gmeit-----------q~tyfqq~gg~~~--------------~~~~~e~tygler~~~~~q~~~~~~~~ 127 (947)
..--||+-++|+||. |-.-|...|--+- -|.++=+--|+|||.|+|-|.+||-|+
T Consensus 396 ~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdV 475 (487)
T 1eov_A 396 YSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRA 475 (487)
T ss_dssp BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGG
T ss_pred eEEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHHHHcCCCcHHhe
Confidence 567799999999985 5666666552221 477888999999999999999999998
Q ss_pred eeCC
Q 002254 128 QYAD 131 (947)
Q Consensus 128 ~~~~ 131 (947)
.+=+
T Consensus 476 i~FP 479 (487)
T 1eov_A 476 SLFP 479 (487)
T ss_dssp CSSC
T ss_pred eecC
Confidence 6543
No 41
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=46.23 E-value=35 Score=39.77 Aligned_cols=99 Identities=20% Similarity=0.361 Sum_probs=59.1
Q ss_pred ccccceeeeEEEEcCCCcchHHH--HHHH-HHhcCCCCCCCceeeecC--CCCCcccccccccceeeecC----eeeeee
Q 002254 19 NRLQRHTQFQVILKPDPGNSQDL--FIRS-LSALGIDVTEHDIRFVED--NWESPVLGAWGLGWEIWMDG----MEITQF 89 (947)
Q Consensus 19 nrl~~~~q~qvi~kp~p~~~~~~--yl~s-l~~~g~~~~~~dirfved--~we~p~lga~g~gwevw~~g----meitq~ 89 (947)
.++-.+||.-.++-..+-++-+| .|++ ++++|+ .++||... .|-.|+..+ +|+++| +||--+
T Consensus 365 tHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~lG~----~~~rfrps~fPftePS~ev-----~i~~~G~~~W~EIGg~ 435 (508)
T 3l4g_A 365 THLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGI----TQLRFKPAYNPYTEPSMEV-----FSYHQGLKKWVEVGNS 435 (508)
T ss_dssp SSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTTTC----CCCEEEECCCTTCSSEEEE-----EECCSTTSSCEEEEEE
T ss_pred CcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHcCC----cceEeeccCCCCCCCeEEE-----EEEECCccceEEEEee
Confidence 45556888877765455555554 3333 567885 46888765 456775554 233455 555544
Q ss_pred ehhh----hccCcc--cccceeehhhhHHHHHHHHhCCCccceee
Q 002254 90 TYFQ----QAGSLQ--LSPVSVEITYGLERILMLLQGVDHFKKIQ 128 (947)
Q Consensus 90 tyfq----q~gg~~--~~~~~~e~tygler~~~~~q~~~~~~~~~ 128 (947)
--+- +..|++ ..-...| -|||||+|..-|++++-++-
T Consensus 436 G~vhP~VL~~~Gipe~~~v~Afg--LgLeRLaml~~gi~diR~l~ 478 (508)
T 3l4g_A 436 GVFRPEMLLPMGLPENVSVIAWG--LSLERPTMIKYGINNIRELV 478 (508)
T ss_dssp ECCCHHHHGGGTCCTTEEEEEEE--EESHHHHTTTTTCSCGGGTS
T ss_pred eeEcHHHHHHCCCCCCceEEEEE--ecHHHHHHHHcCCcHHHHHh
Confidence 3222 234553 1222333 48999999999999887664
No 42
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=40.57 E-value=11 Score=38.18 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=38.5
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccce-eeec
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWE-IWMD 82 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwe-vw~~ 82 (947)
-||+| +.|..-++.+|+++ .++-||.|++++=..||-..||- ||+.
T Consensus 182 ~KP~p----~~~~~~~~~~~~~~--~~~~~vGD~~~~Di~~a~~aG~~~i~v~ 228 (264)
T 1yv9_A 182 GKPKA----IIMERAIAHLGVEK--EQVIMVGDNYETDIQSGIQNGIDSLLVT 228 (264)
T ss_dssp STTSH----HHHHHHHHHHCSCG--GGEEEEESCTTTHHHHHHHHTCEEEEET
T ss_pred CCCCH----HHHHHHHHHcCCCH--HHEEEECCCcHHHHHHHHHcCCcEEEEC
Confidence 48877 57778899999976 57999999999999999999998 5554
No 43
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Probab=39.88 E-value=8.1 Score=40.28 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=37.4
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee-eec
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 82 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev-w~~ 82 (947)
.||+| +.|+.-++.+|++|. ++-||+|... =..||-..||-+ |++
T Consensus 186 ~KP~p----~~~~~a~~~lg~~p~--~~l~vgDs~~-di~aA~~aG~~~i~v~ 231 (253)
T 2g80_A 186 KKTET----QSYANILRDIGAKAS--EVLFLSDNPL-ELDAAAGVGIATGLAS 231 (253)
T ss_dssp CTTCH----HHHHHHHHHHTCCGG--GEEEEESCHH-HHHHHHTTTCEEEEEC
T ss_pred CCCCH----HHHHHHHHHcCCCcc--cEEEEcCCHH-HHHHHHHcCCEEEEEc
Confidence 48876 789999999999874 6999999985 488999999985 553
No 44
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.32 E-value=62 Score=36.68 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=70.3
Q ss_pred HHHHhcccC-----cccccCCCCHHHHHHHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhhhhhcchhh---hhc--
Q 002254 600 ADFQGQLKG-----ILFHEKLGTMLDKTMRVQNMVRKLSLDLG-----INEDMLQIVQEAASLAMSDLATSV---VME-- 664 (947)
Q Consensus 600 ~~~v~kLk~-----VvF~~kLGSl~DK~~Ri~~La~~La~~l~-----~~~~~~~~~~RAA~L~KaDL~T~M---V~E-- 664 (947)
-.|+...++ .||+..--|-++.+-.+..+|..++..++ +++.+...+..||.|- |+.-.- ++|
T Consensus 33 fqRL~~~~Qlg~~~~v~p~a~htRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlH--DiGh~PfsH~~E~~ 110 (410)
T 2q14_A 33 LQRLTRIKQVGLSSVVYPGAQHTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLH--DIGHGPFSHVLEDT 110 (410)
T ss_dssp HHGGGGSBTTTTTTTTCTTCCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT--TTTCCTTHHHHHTT
T ss_pred HHhHhhhhccCCceeecCCCCCCeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh--ccCCCccccccHHh
Confidence 344444444 57777777999999999999999999987 5554455666676653 333210 000
Q ss_pred Ch--hhhhHHHHHHHHh-----CCCCHHHHHHHHhhcCCCCCCCCCCCchhHHHHH---HHHHHHHHHH-hhhcCCCCCC
Q 002254 665 FT--SLAGVMACHYALR-----DGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLA---VADRLDTLVG-LFAAGCQPSS 733 (947)
Q Consensus 665 FP--ELQGiMG~~YA~~-----~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~iLs---lADKlDtLvG-~F~iG~~PTG 733 (947)
+. --.-.+|...+.. .+-=..++.-|. +.-|.+..+.++| .|||||.|.= .+..|. +-|
T Consensus 111 ~~~~~~He~~s~~ii~~l~~~i~~~L~~~~~ii~---------g~~~~~~l~~ivs~~ldaDr~DYL~RDa~~~Gv-~~G 180 (410)
T 2q14_A 111 IVQGVSHEEISLMLMERMNKEMNGQLSLAIQIFK---------DEYPKRFLHQLVSGQLDMDRLDYLRRDSFYTGV-TEG 180 (410)
T ss_dssp TSTTCCHHHHHHHHHHHHHHHTTTTTHHHHHHHT---------TCSSSTHHHHHHSSTTCHHHHHHHHHHHHHHCC-GGG
T ss_pred hcCCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHc---------CCCccchHHHhhcCCcCcHHHHHhcchHHHhCC-CCC
Confidence 00 0000111111110 111222333332 1357889999999 9999999872 333453 345
Q ss_pred CCCh
Q 002254 734 TNDP 737 (947)
Q Consensus 734 S~DP 737 (947)
+-|.
T Consensus 181 ~~d~ 184 (410)
T 2q14_A 181 NIGS 184 (410)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 5553
No 45
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=36.07 E-value=49 Score=34.97 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=100.9
Q ss_pred cccceeeeccccccC-cchhhhhcCCccccccccCCCCcHHHHHHHHHCCCCccCceEEeeCCe-eE--EEEEEEecchh
Q 002254 311 PRRLVVFVESLCQKQ-SENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKT-EY--VYARVKETARL 386 (947)
Q Consensus 311 PRRLav~v~~l~~~q-~d~~~e~kGP~v~~Afd~dG~pTkAa~GFak~~Gv~~~~l~~~~~~kg-ey--l~~~~~~~G~~ 386 (947)
.-|||++|.|+.... .........+|+..|+...+..++...--|+.+|-++= |..=-.+.+ .- .--..-..|.+
T Consensus 3 ~p~lAIVIDD~G~~~~~~~~i~~Lp~pvT~Ai~P~~p~~~~~a~~A~~~G~Evl-lHlPMep~~~~~~~~gp~~L~~~~s 81 (245)
T 2nly_A 3 MKRAAIIIDDFGGDVKGVDDFLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLEVI-VHMPLEPKKGKISWLGPSGITSNLS 81 (245)
T ss_dssp CEEEEEEEEEESSCCTTHHHHHTCSSCEEEEECSSSTTHHHHHHHHHHTTCEEE-EEEEECCC--------CCCBCTTCC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHCCCEEE-EEcCCCCCCCCCCCCCcccCcCCCC
Confidence 348999999999764 34456778889999999999999999999999998731 000000111 00 00000122444
Q ss_pred HHHHHHhHHHHHHhcCCCCccccc--CCCCc-ccchhhhHHHHcCCceeeeEEeceeeCCcccccccCCCCcEEeCChhH
Q 002254 387 ALEVLSEDVPSIISKLSFPKSMRW--NSQVM-FSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAES 463 (947)
Q Consensus 387 t~eiL~eil~~~I~~L~fpK~MRW--~~~~~-F~RPIrwIvaL~g~~Vvp~~~~gi~sgn~T~GHRf~~~~~i~I~~a~~ 463 (947)
..+ +...|...++++|.-+-|-= ++.+. =-+..+|++..+..+-+ +=+.|+-+. -+-+..
T Consensus 82 ~~e-i~~~l~~al~~vP~a~GvnNHmGS~~T~~~~~m~~vm~~l~~~gL----~fvDS~Ts~------------~S~a~~ 144 (245)
T 2nly_A 82 VGE-VKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVKEKNA----FIIDSGTSP------------HSLIPQ 144 (245)
T ss_dssp HHH-HHHHHHHHHHHSTTCCEEEEEECTTGGGCHHHHHHHHHHHHHTTC----EEEECCCCS------------SCSHHH
T ss_pred HHH-HHHHHHHHHHHCCCcEEEecccccchhcCHHHHHHHHHHHHHCCC----EEEcCCCCc------------ccHHHH
Confidence 444 45558999999999887654 33332 34688999998876532 112222110 011111
Q ss_pred HHHHH----HhCCeecCH-hHHHHHHHHHHHH---HHHhcCCeec
Q 002254 464 YAGVM----RNAGVKIKI-EDRRKTIFDRSNA---LAKSVNGRII 500 (947)
Q Consensus 464 Y~~~L----~~~~VIvd~-~eRr~~I~~qi~~---lA~~~g~~v~ 500 (947)
-...+ .+..|.+|. ..-.+.|.+|+++ +|++.|..|.
T Consensus 145 ~A~~~gvp~~~rdvFLD~~~~~~~~I~~ql~~a~~~A~~~G~aIa 189 (245)
T 2nly_A 145 LAEELEVPYATRSIFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIG 189 (245)
T ss_dssp HHHHTTCCEEECCEESCCTTCCHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred HHHHcCCCeEEeeEECCCCCCCHHHHHHHHHHHHHHHhhcCcEEE
Confidence 11111 134577787 6666667666665 5667775553
No 46
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=35.85 E-value=15 Score=36.56 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHhhhhhcchhhhhcChhhhhHHHHHHHHhC------CC
Q 002254 614 KLGTMLDKTMRVQNMVRKLSLD-----LGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRD------GY 682 (947)
Q Consensus 614 kLGSl~DK~~Ri~~La~~La~~-----l~~~~~~~~~~~RAA~L~KaDL~T~MV~EFPELQGiMG~~YA~~~------GE 682 (947)
.-=|+.+.+.|+..+|..|+.. -+++ ...+..+|.|- |++--.++-.|-=. ..+..|.... --
T Consensus 29 ~~esvaeHs~rVa~~A~~la~~~~~~~~~~d---~~~v~~~aLlH--D~~E~~~GD~p~~~-~~~~~~~~~E~~a~~~~l 102 (177)
T 2cqz_A 29 EPESIADHSFGVAFITLVLADVLEKRGKRID---VEKALKMAIVH--DLAEAIITDIPLSA-QEFVDKDKAEALVFKKVF 102 (177)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHT--TTTHHHHCCCCTTT-TTTSCHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHh--chHHHHcCCCcccc-ccHHHHHHHHHHHHHHHH
Confidence 3468999999999999999986 3454 33456677764 33333333332211 1111111100 00
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCC
Q 002254 683 SQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQ 730 (947)
Q Consensus 683 ~~~VA~AI~EhYlPr~agD~LP~s~~G~iLslADKlDtLvG~F~iG~~ 730 (947)
+++...+. -|- -+.|+.|.+|--|||||.++=+|..+..
T Consensus 103 -~~i~~l~~-ef~-------~~~t~Ea~~vk~aDrL~a~l~a~~~~~~ 141 (177)
T 2cqz_A 103 -PEFYELYR-EYQ-------ECSSPEAQLVRIADKLDMILQAYQYELS 141 (177)
T ss_dssp -GGGHHHHH-HHH-------HTCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHH-Hhh-------cCCCHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 22332233 331 2679999999999999999888765544
No 47
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=35.62 E-value=24 Score=26.57 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=15.4
Q ss_pred CCCCChhhhhHHHHHHHHHHH
Q 002254 732 SSTNDPFGLRRISYGLVQILI 752 (947)
Q Consensus 732 TGS~DPfALRRaAlGIirIl~ 752 (947)
++|+||...--.-+||+..++
T Consensus 3 ~dSsDplviaA~IigiLHlil 23 (35)
T 2ljb_A 3 NDSSDPLVVAASIIGILHFIA 23 (35)
T ss_dssp ---CCTHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 689999999888889888763
No 48
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=34.92 E-value=60 Score=37.20 Aligned_cols=114 Identities=9% Similarity=0.100 Sum_probs=75.8
Q ss_pred hhhHhhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcce-eecccccceeeeccccccCcchhhhhcCCcccccccc
Q 002254 265 LFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQ-AFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQ 343 (947)
Q Consensus 265 ~lLlEIGtEELPa~~v~~a~~~l~~~~~~~L~~~~L~~~~i~-~~~TPRRLav~v~~l~~~q~d~~~e~kGP~v~~Afd~ 343 (947)
-+.+++-..++|+-.+-+-++-..+.+.+.|+.++...=... +|+-- +-++++ .+...+-...+...|||+-
T Consensus 278 ~~~~~f~~p~~~~D~l~pQl~k~~~~i~~~L~~~gF~v~~~~~~~~~~-~~~l~~-e~~~~~lp~~~~~~GPpv~----- 350 (437)
T 1r89_A 278 VFAVKFRKPDIVDDNLYPQLERASRKIFEFLERENFMPLRSAFKASEE-FCYLLF-ECQIKEISRVFRRMGPQFE----- 350 (437)
T ss_dssp EEEEEEECCSCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECSS-EEEEEE-EESCSCCCSEEEEEEEETT-----
T ss_pred EEEEEECCCCCCcccchHHHHHHHHHHHHHHHHCCCEEEEecccccCC-eeEEEE-EEcccccCCeeEeeCCCcc-----
Confidence 366777778999999999999999999999999987653333 44433 544444 4555665678889999992
Q ss_pred CCCCcHHHHHHHHHCCCCccCceEEeeCCeeEEEEEEEecchhHHHHHHhH
Q 002254 344 QGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSED 394 (947)
Q Consensus 344 dG~pTkAa~GFak~~Gv~~~~l~~~~~~kgeyl~~~~~~~G~~t~eiL~ei 394 (947)
-...++.|.+++-- . -.. + ++|.|+. .+..+=..+.++|..-
T Consensus 351 ---~~~~~~~F~~k~~~-~-g~~-i--~~~r~~~-~~~R~~~~~~~~l~~~ 392 (437)
T 1r89_A 351 ---DERNVKKFLSRNRA-F-RPF-I--ENGRWWA-FEMRKFTTPEEGVRSY 392 (437)
T ss_dssp ---CHHHHHHHHHSCCS-S-CCE-E--ETTEEEE-EEECSCSSHHHHHHHH
T ss_pred ---chhhHHHHHHhcCC-C-CCc-e--eCCEEEE-EEEEeeCCHHHHHHhh
Confidence 12568999999821 0 012 2 2445554 4444556667777663
No 49
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=34.47 E-value=22 Score=34.86 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=32.8
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccce-eeec
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWE-IWMD 82 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwe-vw~~ 82 (947)
-||+| +.|..-++.+|+++ -||+|+..+=..+|-..||- ||++
T Consensus 149 ~Kp~~----~~~~~~~~~~~~~~-----~~vgD~~~~Di~~a~~aG~~~i~v~ 192 (220)
T 2zg6_A 149 VKPNP----KIFGFALAKVGYPA-----VHVGDIYELDYIGAKRSYVDPILLD 192 (220)
T ss_dssp ----C----CHHHHHHHHHCSSE-----EEEESSCCCCCCCSSSCSEEEEEBC
T ss_pred CCCCH----HHHHHHHHHcCCCe-----EEEcCCchHhHHHHHHCCCeEEEEC
Confidence 58988 57778899999987 79999999888999999997 4454
No 50
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=33.52 E-value=26 Score=27.24 Aligned_cols=21 Identities=14% Similarity=0.491 Sum_probs=15.8
Q ss_pred CCCCChhhhhHHHHHHHHHHH
Q 002254 732 SSTNDPFGLRRISYGLVQILI 752 (947)
Q Consensus 732 TGS~DPfALRRaAlGIirIl~ 752 (947)
++|+||...--.-+||+.+++
T Consensus 3 ~dssdplv~aa~iiGIlHLiL 23 (43)
T 2kih_A 3 NDSSDPLVVAANIIGILHLIL 23 (43)
T ss_dssp ---CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHH
Confidence 689999999999999988763
No 51
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=31.67 E-value=14 Score=38.25 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=38.2
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee-eec
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 82 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev-w~~ 82 (947)
-||+| +.|+.-++.+|+++ +++-||+|+ .+=..||-..||-+ |++
T Consensus 186 ~KP~p----~~~~~~~~~lg~~p--~~~l~VgDs-~~di~aA~~aG~~~i~v~ 231 (261)
T 1yns_A 186 HKVES----ESYRKIADSIGCST--NNILFLTDV-TREASAAEEADVHVAVVV 231 (261)
T ss_dssp CTTCH----HHHHHHHHHHTSCG--GGEEEEESC-HHHHHHHHHTTCEEEEEC
T ss_pred CCCCH----HHHHHHHHHhCcCc--ccEEEEcCC-HHHHHHHHHCCCEEEEEe
Confidence 48887 68889999999976 679999999 88899999999974 653
No 52
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=31.43 E-value=20 Score=34.68 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=37.8
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee-eec
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 82 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev-w~~ 82 (947)
.||+|.-++..--. ++.+|+++ .++-||.|+++|=..+|--.||-+ |++
T Consensus 151 ~KP~~~~~~~~l~~-~~~lgi~~--~~~~~vGD~~~~Di~~a~~aG~~~~~~~ 200 (240)
T 3smv_A 151 YKPNPNNFTYMIDA-LAKAGIEK--KDILHTAESLYHDHIPANDAGLVSAWIY 200 (240)
T ss_dssp CTTSHHHHHHHHHH-HHHTTCCG--GGEEEEESCTTTTHHHHHHHTCEEEEEC
T ss_pred CCCCHHHHHHHHHH-HHhcCCCc--hhEEEECCCchhhhHHHHHcCCeEEEEc
Confidence 38888655544333 89999976 679999999999999999999975 444
No 53
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=31.28 E-value=19 Score=41.24 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=42.9
Q ss_pred cccceeeecCe-eee-----------eeehhhhccCc--------cc----ccceeehhhhHHHHHHHHhCCCccceeee
Q 002254 74 GLGWEIWMDGM-EIT-----------QFTYFQQAGSL--------QL----SPVSVEITYGLERILMLLQGVDHFKKIQY 129 (947)
Q Consensus 74 g~gwevw~~gm-eit-----------q~tyfqq~gg~--------~~----~~~~~e~tygler~~~~~q~~~~~~~~~~ 129 (947)
---||+-+.|+ ||. |-.=|...|.- +. .|.++=+--|+||+.|++-|.+||-|..+
T Consensus 367 ~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~ 446 (456)
T 3m4p_A 367 TESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCL 446 (456)
T ss_dssp ECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred eEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeec
Confidence 44699999997 883 44455555531 11 36667788899999999999999999876
Q ss_pred CC
Q 002254 130 AD 131 (947)
Q Consensus 130 ~~ 131 (947)
=+
T Consensus 447 FP 448 (456)
T 3m4p_A 447 YP 448 (456)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 54
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=28.50 E-value=31 Score=33.40 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=51.0
Q ss_pred EcCCCcchHHHHHHHHHhcC-CCCCCCceeeecCCCCCcccccccccce-eeecCeeeeeeehhhhccCcccccceeehh
Q 002254 31 LKPDPGNSQDLFIRSLSALG-IDVTEHDIRFVEDNWESPVLGAWGLGWE-IWMDGMEITQFTYFQQAGSLQLSPVSVEIT 108 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g-~~~~~~dirfved~we~p~lga~g~gwe-vw~~gmeitq~tyfqq~gg~~~~~~~~e~t 108 (947)
-||.| +.|..-++.+| +++ .++-+|.|+++|=..+|--.||- ||++.-. ..-..+..+--++
T Consensus 157 ~kp~~----~~~~~~~~~~g~~~~--~~~i~vGD~~~~Di~~a~~aG~~~i~~~~~~----------~~~~~~~~ad~v~ 220 (238)
T 3ed5_A 157 QKPMK----EYFNYVFERIPQFSA--EHTLIIGDSLTADIKGGQLAGLDTCWMNPDM----------KPNVPEIIPTYEI 220 (238)
T ss_dssp CTTCH----HHHHHHHHTSTTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEECTTC----------CCCTTCCCCSEEE
T ss_pred CCCCh----HHHHHHHHHcCCCCh--hHeEEECCCcHHHHHHHHHCCCEEEEECCCC----------CCCcccCCCCeEE
Confidence 46666 67888899999 876 67999999999999999999994 5654311 0111222333445
Q ss_pred hhHHHHHHHHhCCC
Q 002254 109 YGLERILMLLQGVD 122 (947)
Q Consensus 109 ygler~~~~~q~~~ 122 (947)
..++-|..+|+...
T Consensus 221 ~~~~el~~~l~~~~ 234 (238)
T 3ed5_A 221 RKLEELYHILNIEN 234 (238)
T ss_dssp SSGGGHHHHHTCCC
T ss_pred CCHHHHHHHHHhhc
Confidence 55666666666543
No 55
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=28.47 E-value=30 Score=33.35 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=37.0
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 80 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw 80 (947)
.||.| +.|..-++.+|+++ .++-+|.|+.+|=..+|--.||-+.
T Consensus 157 ~kp~~----~~~~~~~~~lgi~~--~~~~~iGD~~~nDi~~a~~aG~~~~ 200 (235)
T 2om6_A 157 YKPRK----EMFEKVLNSFEVKP--EESLHIGDTYAEDYQGARKVGMWAV 200 (235)
T ss_dssp CTTCH----HHHHHHHHHTTCCG--GGEEEEESCTTTTHHHHHHTTSEEE
T ss_pred CCCCH----HHHHHHHHHcCCCc--cceEEECCChHHHHHHHHHCCCEEE
Confidence 46765 67888899999987 5799999999998999998999853
No 56
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=25.91 E-value=19 Score=34.81 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=35.7
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccce-ee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWE-IW 80 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwe-vw 80 (947)
.||+| +.|+.-++.+|++| +++-||+|. .+=..||--.|+- ||
T Consensus 139 ~KP~p----~~~~~a~~~lg~~p--~e~l~VgDs-~~Di~aA~~aG~~~i~ 182 (216)
T 3kbb_A 139 GKPDP----EIYLLVLERLNVVP--EKVVVFEDS-KSGVEAAKSAGIERIY 182 (216)
T ss_dssp CTTST----HHHHHHHHHHTCCG--GGEEEEECS-HHHHHHHHHTTCCCEE
T ss_pred CcccH----HHHHHHHHhhCCCc--cceEEEecC-HHHHHHHHHcCCcEEE
Confidence 48888 47899999999987 679999998 4678889888886 45
No 57
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=25.72 E-value=33 Score=33.13 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=37.3
Q ss_pred cCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceeee
Q 002254 32 KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWM 81 (947)
Q Consensus 32 kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw~ 81 (947)
||.| +.|..-++.+|+++ .++-+|.|+.+|=..+|--.||-+.+
T Consensus 155 kp~~----~~~~~~~~~~~~~~--~~~~~vGD~~~~Di~~a~~aG~~~~~ 198 (230)
T 3vay_A 155 KPDP----APFLEALRRAKVDA--SAAVHVGDHPSDDIAGAQQAGMRAIW 198 (230)
T ss_dssp TTSH----HHHHHHHHHHTCCG--GGEEEEESCTTTTHHHHHHTTCEEEE
T ss_pred CcCH----HHHHHHHHHhCCCc--hheEEEeCChHHHHHHHHHCCCEEEE
Confidence 7777 78888999999976 56999999998889999989987543
No 58
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=25.29 E-value=45 Score=39.26 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=44.6
Q ss_pred cccccceeeecCeeee-----------eeehhhhccCccc-------------ccceeehhhhHHHHHHHHhCCCcccee
Q 002254 72 AWGLGWEIWMDGMEIT-----------QFTYFQQAGSLQL-------------SPVSVEITYGLERILMLLQGVDHFKKI 127 (947)
Q Consensus 72 a~g~gwevw~~gmeit-----------q~tyfqq~gg~~~-------------~~~~~e~tygler~~~~~q~~~~~~~~ 127 (947)
-+---||+-+.|+||. |-.-|...| ++- -|.++=+--|+||+.|++-|.+||-|.
T Consensus 458 ~~~~rFDL~i~G~Ei~nG~~rl~Dp~~~~~R~~~~G-~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdV 536 (548)
T 3i7f_A 458 NYSNSYDVFVRGQEITSGAQRIHDPEFLMKRCIEKG-VDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKV 536 (548)
T ss_dssp TBBSEEEEEETTEEEEEEEEECCCHHHHHHHHHHTT-CCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGG
T ss_pred CeEEEEEEEECCEEEeeCeeecCCHHHHHHHHHHcC-CChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHh
Confidence 3556799999999995 555566554 221 366666778999999999999999998
Q ss_pred eeCC
Q 002254 128 QYAD 131 (947)
Q Consensus 128 ~~~~ 131 (947)
.+=+
T Consensus 537 i~FP 540 (548)
T 3i7f_A 537 TLFP 540 (548)
T ss_dssp SSSC
T ss_pred hcCC
Confidence 6543
No 59
>1wp7_A Fusion protein; fusion core, heptad repeat, viral protein; 2.20A {Nipah virus} PDB: 1wp8_A
Probab=25.08 E-value=31 Score=31.23 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=35.2
Q ss_pred eehhhhHHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHc
Q 002254 105 VEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLAS 176 (947)
Q Consensus 105 ~e~tygler~~~~~q~~~~~~~~~~~~~~~y~~~~~~~e~~~s~~~~~~~~~~~~~~~f~~~~~e~~~~~~~ 176 (947)
-|+|.|+.-++-.+|++-+.-+=. +.=|-+-.. .+.+....-++.-.+|-+||+||++.
T Consensus 23 ~EVt~glsqlaVAIqaIQD~IN~~----l~~~~~~~s---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (89)
T 1wp7_A 23 VKLQETAEKTVYVLTALQDYGGSG----GSGGKVDIS---------SQISSMNQSLQQSKDYIKEAQRLLDT 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHCCC----------------HH---------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----Cccchhhhh---------hhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 489999999999999998654322 223333222 22333344455668999999999874
No 60
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=24.70 E-value=35 Score=35.00 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=39.3
Q ss_pred EEcCCCcchHHHHHHHHHhc----CCCCCCCceeeecCCCCCccccccccccee-eec
Q 002254 30 ILKPDPGNSQDLFIRSLSAL----GIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 82 (947)
Q Consensus 30 i~kp~p~~~~~~yl~sl~~~----g~~~~~~dirfved~we~p~lga~g~gwev-w~~ 82 (947)
.-||+|. +|..-++.+ |+++ +++-||.|+.++=..||-..||-. |+.
T Consensus 202 ~~KP~p~----~~~~a~~~l~~~~~~~~--~~~~~VGD~~~~Di~~A~~aG~~~i~v~ 253 (284)
T 2hx1_A 202 FGKPDSQ----MFMFAYDMLRQKMEISK--REILMVGDTLHTDILGGNKFGLDTALVL 253 (284)
T ss_dssp ESTTSSH----HHHHHHHHHHTTSCCCG--GGEEEEESCTTTHHHHHHHHTCEEEEES
T ss_pred ecCCCHH----HHHHHHHHHhhccCCCc--ceEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence 4699984 788889999 9876 679999999999999999999874 543
No 61
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=23.50 E-value=39 Score=33.31 Aligned_cols=44 Identities=30% Similarity=0.609 Sum_probs=36.4
Q ss_pred cCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee-ee
Q 002254 32 KPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WM 81 (947)
Q Consensus 32 kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev-w~ 81 (947)
||.| +.|..-++.+|+++ +++-+|+|.++|=..+|--.||-+ |+
T Consensus 150 Kp~~----~~~~~~~~~~g~~~--~~~i~iGD~~~~Di~~a~~aG~~~~~v 194 (241)
T 2hoq_A 150 KPHP----KIFKKALKAFNVKP--EEALMVGDRLYSDIYGAKRVGMKTVWF 194 (241)
T ss_dssp TTCH----HHHHHHHHHHTCCG--GGEEEEESCTTTTHHHHHHTTCEEEEE
T ss_pred CCCH----HHHHHHHHHcCCCc--ccEEEECCCchHhHHHHHHCCCEEEEE
Confidence 6766 57888899999976 579999999999888988888874 54
No 62
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=23.41 E-value=22 Score=33.93 Aligned_cols=43 Identities=21% Similarity=0.411 Sum_probs=34.9
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 80 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw 80 (947)
-||+| +.|..-++.+|+++ .++-||.|+... ..+|--.||-+.
T Consensus 140 ~Kp~~----~~~~~~~~~~~~~~--~~~~~vgD~~~D-i~~a~~aG~~~~ 182 (200)
T 3cnh_A 140 MKPNP----AMYRLGLTLAQVRP--EEAVMVDDRLQN-VQAARAVGMHAV 182 (200)
T ss_dssp CTTCH----HHHHHHHHHHTCCG--GGEEEEESCHHH-HHHHHHTTCEEE
T ss_pred CCCCH----HHHHHHHHHcCCCH--HHeEEeCCCHHH-HHHHHHCCCEEE
Confidence 47776 57888899999976 679999999954 888888888754
No 63
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=22.97 E-value=24 Score=33.55 Aligned_cols=45 Identities=29% Similarity=0.447 Sum_probs=35.9
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee-eec
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 82 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev-w~~ 82 (947)
-||+| +.|..-++.+|+++ .++-||.|...+ ..+|-..||-+ |++
T Consensus 147 ~Kp~~----~~~~~~~~~~~~~~--~~~~~vgD~~~D-i~~a~~aG~~~~~~~ 192 (206)
T 2b0c_A 147 RKPEA----RIYQHVLQAEGFSP--SDTVFFDDNADN-IEGANQLGITSILVK 192 (206)
T ss_dssp CTTCH----HHHHHHHHHHTCCG--GGEEEEESCHHH-HHHHHTTTCEEEECC
T ss_pred CCCCH----HHHHHHHHHcCCCH--HHeEEeCCCHHH-HHHHHHcCCeEEEec
Confidence 37776 68888999999976 579999999764 88899999874 444
No 64
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=22.97 E-value=63 Score=22.78 Aligned_cols=19 Identities=16% Similarity=0.544 Sum_probs=16.3
Q ss_pred CCChhhhhHHHHHHHHHHH
Q 002254 734 TNDPFGLRRISYGLVQILI 752 (947)
Q Consensus 734 S~DPfALRRaAlGIirIl~ 752 (947)
|+||...--.-+||+.+++
T Consensus 1 ssDplv~aa~iiGilHLiL 19 (26)
T 3bkd_A 1 SSDPLVVAASIMGILHLIL 19 (26)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHH
Confidence 7899999999999988764
No 65
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=22.94 E-value=40 Score=33.44 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=36.2
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI 79 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev 79 (947)
-||.| +.|..-++.+|+++ .++-+|.|+.+|=..+|.-.||-+
T Consensus 178 ~Kp~~----~~~~~~~~~lgi~~--~~~~~iGD~~~~Di~~a~~aG~~~ 220 (259)
T 2ho4_A 178 GKPEK----TFFLEALRDADCAP--EEAVMIGDDCRDDVDGAQNIGMLG 220 (259)
T ss_dssp STTSH----HHHHHHGGGGTCCG--GGEEEEESCTTTTHHHHHHTTCEE
T ss_pred cCCCH----HHHHHHHHHcCCCh--HHEEEECCCcHHHHHHHHHCCCcE
Confidence 47776 46777899999876 579999999999999999999874
No 66
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=22.46 E-value=31 Score=38.10 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=42.5
Q ss_pred ccccceeeecCeeee-----------eeehhhhc------cCccc--------------ccceeehhhhHHHHHHHHhCC
Q 002254 73 WGLGWEIWMDGMEIT-----------QFTYFQQA------GSLQL--------------SPVSVEITYGLERILMLLQGV 121 (947)
Q Consensus 73 ~g~gwevw~~gmeit-----------q~tyfqq~------gg~~~--------------~~~~~e~tygler~~~~~q~~ 121 (947)
..-.||+-++|+||. |-.-|..- +|.+- -|.++=+--|+|||.|+|-|.
T Consensus 252 ~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~glGiDRLvmll~g~ 331 (345)
T 3a5y_A 252 VAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGA 331 (345)
T ss_dssp BBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEEEEHHHHHHHHHTC
T ss_pred eEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEEEcHHHHHHHHcCC
Confidence 456799999999875 44445432 34321 366777889999999999999
Q ss_pred Cccceeee
Q 002254 122 DHFKKIQY 129 (947)
Q Consensus 122 ~~~~~~~~ 129 (947)
+||-|+..
T Consensus 332 ~~IRdVi~ 339 (345)
T 3a5y_A 332 ETLAEVIA 339 (345)
T ss_dssp SSGGGGSS
T ss_pred CcHheEec
Confidence 99998754
No 67
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=22.45 E-value=22 Score=31.65 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=33.8
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI 79 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev 79 (947)
-||+| +.|..-++.+|+++ +++-||.|...+ ..+|--.||-.
T Consensus 73 ~Kp~~----~~~~~~~~~~~~~~--~~~~~vgD~~~d-i~~a~~~G~~~ 114 (137)
T 2pr7_A 73 EKPEE----AAFQAAADAIDLPM--RDCVLVDDSILN-VRGAVEAGLVG 114 (137)
T ss_dssp CTTSH----HHHHHHHHHTTCCG--GGEEEEESCHHH-HHHHHHHTCEE
T ss_pred CCCCH----HHHHHHHHHcCCCc--ccEEEEcCCHHH-HHHHHHCCCEE
Confidence 47766 57888899999876 579999999875 88888888864
No 68
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=22.33 E-value=29 Score=34.96 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=35.4
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 80 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw 80 (947)
-||+| +.|+..++.+|++| +++-||+|.. +=..||--.|+-++
T Consensus 169 ~KP~p----~~~~~a~~~lg~~p--~e~l~VGDs~-~Di~aA~~aG~~~i 211 (250)
T 4gib_A 169 NKPHP----EIFLMSAKGLNVNP--QNCIGIEDAS-AGIDAINSANMFSV 211 (250)
T ss_dssp CTTSS----HHHHHHHHHHTCCG--GGEEEEESSH-HHHHHHHHTTCEEE
T ss_pred CCCcH----HHHHHHHHHhCCCh--HHeEEECCCH-HHHHHHHHcCCEEE
Confidence 48888 68899999999977 6799999985 66788888887643
No 69
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=22.23 E-value=36 Score=33.71 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=38.9
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceeee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWM 81 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw~ 81 (947)
-||.| +.|..-++.+|+++...++-+|.|.. |=..+|--.||-+.+
T Consensus 170 ~Kp~~----~~~~~~~~~lgi~~~~~~~i~iGD~~-~Di~~a~~aG~~~i~ 215 (250)
T 3l5k_A 170 GKPDP----DIFLACAKRFSPPPAMEKCLVFEDAP-NGVEAALAAGMQVVM 215 (250)
T ss_dssp CTTST----HHHHHHHHTSSSCCCGGGEEEEESSH-HHHHHHHHTTCEEEE
T ss_pred CCCCh----HHHHHHHHHcCCCCCcceEEEEeCCH-HHHHHHHHcCCEEEE
Confidence 36666 57888999999998778899999999 889999999987654
No 70
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=21.62 E-value=49 Score=31.94 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=37.2
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceeee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWM 81 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw~ 81 (947)
-||.| +.|..-++.+|+++ +++-+|.|..+|=..+|--.||-+..
T Consensus 154 ~kp~~----~~~~~~~~~~~~~~--~~~~~vGD~~~~Di~~a~~aG~~~~~ 198 (234)
T 3u26_A 154 FKPHP----RIFELALKKAGVKG--EEAVYVGDNPVKDCGGSKNLGMTSIL 198 (234)
T ss_dssp CTTSH----HHHHHHHHHHTCCG--GGEEEEESCTTTTHHHHHTTTCEEEE
T ss_pred CCcCH----HHHHHHHHHcCCCc--hhEEEEcCCcHHHHHHHHHcCCEEEE
Confidence 47766 57788899999986 67999999999999999999987543
No 71
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=20.92 E-value=48 Score=31.50 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=53.8
Q ss_pred HHHhCCCccceeeeCC--CCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhhhhhhhcc
Q 002254 116 MLLQGVDHFKKIQYAD--GITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAF 193 (947)
Q Consensus 116 ~~~q~~~~~~~~~~~~--~~~y~~~~~~~e~~~s~~~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~~k~sh~f 193 (947)
.+|+.+-..+.+.|-. ++-| |+..+|.....+...+++.+.+.+... ++
T Consensus 46 ~~l~~l~~~~gl~~~~~G~vl~--V~~~~e~~t~~i~l~~~~a~~l~~~L~------------~~--------------- 96 (137)
T 2y9k_A 46 ALLEKLSLQLGLIWYFDGQAIY--IYDASEMRNAVVSLRNVSLNEFNNFLK------------RS--------------- 96 (137)
T ss_dssp HHHHHHHHHHTEEEEECSSCEE--EEEGGGCEEEEEECSSSCHHHHHHHHC------------CT---------------
T ss_pred HHHHHHHHHcCeEEEEECCEEE--EEechheEEEEEEcCCCCHHHHHHHHH------------Hc---------------
Confidence 3355555677888764 2332 456788888999999999988876541 11
Q ss_pred ccccccCCcc---------hhhhhhHHHHHHHHHHHHH
Q 002254 194 NILDSRGFVG---------VTERARYFGRMRSLARQCA 222 (947)
Q Consensus 194 n~ldar~~~~---------~~er~~~~~~~r~~~~~~~ 222 (947)
++||.||-+. |+....|+.+|+++++++=
T Consensus 97 ~ll~~rg~v~~d~~tn~l~v~g~~~~v~~v~~~i~~lD 134 (137)
T 2y9k_A 97 GLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAATMMD 134 (137)
T ss_dssp TCCCSSSCEEECSSTTEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceEECCCCCEEEEECcHHHHHHHHHHHHHhh
Confidence 2667666655 4556689999999998753
No 72
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=20.79 E-value=28 Score=35.30 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=37.6
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCccccccccccee-eec
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEI-WMD 82 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwev-w~~ 82 (947)
.||.| +.|..-++.+|+++ .++-||.|.++|=..+|.-.||-+ |++
T Consensus 160 ~Kp~~----~~~~~~~~~~g~~~--~~~~~vGD~~~~Di~~a~~aG~~~i~~~ 206 (263)
T 3k1z_A 160 PKPDP----RIFQEALRLAHMEP--VVAAHVGDNYLCDYQGPRAVGMHSFLVV 206 (263)
T ss_dssp CTTSH----HHHHHHHHHHTCCG--GGEEEEESCHHHHTHHHHTTTCEEEEEC
T ss_pred CCCCH----HHHHHHHHHcCCCH--HHEEEECCCcHHHHHHHHHCCCEEEEEc
Confidence 47776 57788899999976 679999999988899999999875 444
No 73
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=20.34 E-value=27 Score=33.45 Aligned_cols=43 Identities=26% Similarity=0.532 Sum_probs=34.9
Q ss_pred EcCCCcchHHHHHHHHHhcCCCCCCCceeeecCCCCCcccccccccceee
Q 002254 31 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIW 80 (947)
Q Consensus 31 ~kp~p~~~~~~yl~sl~~~g~~~~~~dirfved~we~p~lga~g~gwevw 80 (947)
-||.| +.|..-++.+|+++ .++-||.|...+ ..+|.-.||-+.
T Consensus 149 ~Kp~~----~~~~~~~~~~~~~~--~~~~~igD~~~D-i~~a~~aG~~~~ 191 (211)
T 2i6x_A 149 YKPNE----DIFLEMIADSGMKP--EETLFIDDGPAN-VATAERLGFHTY 191 (211)
T ss_dssp CTTSH----HHHHHHHHHHCCCG--GGEEEECSCHHH-HHHHHHTTCEEE
T ss_pred CCCCH----HHHHHHHHHhCCCh--HHeEEeCCCHHH-HHHHHHcCCEEE
Confidence 47776 67788899999987 579999999875 888888888754
Done!