BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002256
(946 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 310/898 (34%), Positives = 461/898 (51%), Gaps = 94/898 (10%)
Query: 58 GYRLISIEEVDGGILGHLQVKEKNNIYGPDIPLLQLYVKHETEDRLRVHITDAQKQRWEV 117
GY + + G+ L ++G DI + +++T +R R ITD +R+EV
Sbjct: 80 GYNVQDMTTTSIGVEAKLNRIPSPTLFGNDINSVLFTTQNQTPNRFRFKITDPNNRRYEV 139
Query: 118 PYNLLPREQPPKLKQTIGRTRKNPIAVSDYSSNGLIFSYSADPFSFAVKRKSNGETLFNT 177
P+ + P + T+ + + +PFS V RKSNG+TLF+T
Sbjct: 140 PHQYVKEFTGPTVSDTLYDVK-----------------VAQNPFSIQVIRKSNGKTLFDT 182
Query: 178 SSDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDVSAI 237
S GP+V+ DQYL+IS +LP D +YG+GE + ++T D
Sbjct: 183 S------IGPLVYSDQYLQISARLPSDY-IYGIGEQVHKRFRHDLSWKTWPIFTRDQLPG 235
Query: 238 NLNTDLYGSHPVYMDLRNVNGEGAAHGVLLLSSNGMDVFYKGTSL-TYKIIGGVFDFYFF 296
+ N +LYG +M + + +G+ + GV L++SN M++F + T + TY++ GG+ DFY
Sbjct: 236 DNNNNLYGHQTFFMCIEDTSGK--SFGVFLMNSNAMEIFIQPTPIVTYRVTGGILDFYIL 293
Query: 297 AGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIW 356
G +P VV QY +G PA YW+LGF RW Y +L VV++VV ++A IP D
Sbjct: 294 LGDTPEQVVQQYQQLVGLPAMPAYWNLGFQLSRWNYKSLDVVKEVVRRNREAGIPFDTQV 353
Query: 357 NDDDHMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVN-----SSYGVY 411
D D+M+ KDFT + + L F++ +H G KY++I+DP I + ++Y Y
Sbjct: 354 TDIDYMEDKKDFTYDQVAFN--GLPQFVQDLHDHGQKYVIILDPAISIGRRANGTTYATY 411
Query: 412 QRGIANDVFIKYE--GEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGLWI 469
+RG V+I P + +VWPG +PDF NP + WW +E FH+ V DGLWI
Sbjct: 412 ERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPNCIDWWANECSIFHQEVQYDGLWI 471
Query: 470 DMNEASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIG 529
DMNE S+F G K C N+ K + PP+ + L +
Sbjct: 472 DMNEVSSFIQG-----STKGC---------------NVNKLNY--PPFTPDI--LDKLMY 507
Query: 530 FKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGL-EGKRPFILSRSTFVGSGHYAA 588
KTI A N +YD HS+YG+S +IAT +A+ + KR FIL+RSTF GSG +AA
Sbjct: 508 SKTICMDAVQ-NWGKQYDVHSLYGYSMAIATEQAVQKVFPNKRSFILTRSTFAGSGRHAA 566
Query: 589 HWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFS 648
HW GDN +WE +++SI+ ML F +FG+P+VG+DICGF TEELC RW+++GAFYPFS
Sbjct: 567 HWLGDNTASWEQMEWSITGMLEFSLFGIPLVGADICGFVAETTEELCRRWMQLGAFYPFS 626
Query: 649 RDHANYYSPRQE---LYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFF 705
R+H + Q+ Q + +S+R L +RY LLPFLYTL Y+AH+ G +ARP+
Sbjct: 627 RNHNSDGYEHQDPAFFGQNSLLVKSSRQYLTIRYTLLPFLYTLFYKAHVFGETVARPVLH 686
Query: 706 SFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQAISSKDGKF 765
F + T+FL G +L+++PVL+QG V A P WY+ + K +
Sbjct: 687 EFYEDTNSWIEDTEFLWGPALLITPVLKQGADTVSAYIPDAIWYDYESGAKRPWRK--QR 744
Query: 766 VTLDAPLHVVNVHLYQNTILPMQQGGLISKEARMTPFSLVVTFPAGASGVQAKGKLYLDE 825
V + P + +HL I+P+Q+ + + +R P L+V A AKG + D+
Sbjct: 745 VDMYLPADKIGLHLRGGYIIPIQEPDVTTTASRKNPLGLIV---ALGENNTAKGDFFWDD 801
Query: 826 DELPEMKLGNGYSTYVDFFATTGNGTVKI---WSEVQEGKFALSKGWIIDSVTVLGLGGS 882
E + + NG Y+ + + N T+ I S QEG +V +LGL S
Sbjct: 802 GETKD-TIQNG--NYILYTFSVSNNTLDIVCTHSSYQEGTTL-----AFQTVKILGLTDS 853
Query: 883 GKASTLEINGSPTNANSKIEFNASEQKHLNSVEDEQKSVMVGIKGLGFPVGKNFVMSW 940
+ N P NA+S ++AS Q L I L +G+NF + W
Sbjct: 854 VTEVRVAENNQPMNAHSNFTYDASNQVLL-------------IADLKLNLGRNFSVQW 898
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 279/855 (32%), Positives = 431/855 (50%), Gaps = 83/855 (9%)
Query: 67 VDGGILGHLQVKEKNNIYGPDIPLLQLYVKHETEDRLRVHITDAQKQRWEVPYNLLPREQ 126
+ G L+ + ++G ++ + L +++T +R +TD R+EVP+
Sbjct: 61 TNAGFTARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLTDQTNNRFEVPH------- 113
Query: 127 PPKLKQTIGRTRKNPIAVSDYSSNGLIFSYSADPFSFAVKRKSNGETLFNTSSDESDPFG 186
+ + N A Y S PFS V R+SN LF++S G
Sbjct: 114 -----EHVQSFSGNAAASLTYQ-----VEISRQPFSIKVTRRSNNRVLFDSS------IG 157
Query: 187 PMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPND----PYTLYTTDVSAINLNTD 242
P++F DQ+L++ST+LP ++YGLGE H + Y +D + ++ D + T+
Sbjct: 158 PLLFADQFLQLSTRLPS-TNVYGLGE----HVHQQYRHDMNWKTWPIFNRDTTPNGNGTN 212
Query: 243 LYGSHPVYMDLRNVNGEGAAHGVLLLSSNGMDVFYK-GTSLTYKIIGGVFDFYFFAGPSP 301
LYG+ ++ L + G + GV L++SN M+V + ++TY+ IGG+ DFY F G +P
Sbjct: 213 LYGAQTFFLCLED--ASGLSFGVFLMNSNAMEVVLQPAPAITYRTIGGILDFYVFLGNTP 270
Query: 302 LAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIWNDDDH 361
VV +Y IGRPA YW+LGFH R+ Y L + +VVE + A++P DV D D+
Sbjct: 271 EQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDY 330
Query: 362 MDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSS----YGVYQRGIAN 417
MD +DFT + ++ F+ ++H G K ++I+DP I NSS YG Y RG
Sbjct: 331 MDERRDFTYDSVDF--KGFPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDM 388
Query: 418 DVFIKYEG--EPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNEAS 475
+++ P + +VWPG FPD+ NP WW E FH V DG+WIDMNE S
Sbjct: 389 KIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELFHNQVEFDGIWIDMNEVS 448
Query: 476 NFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIAT 535
NF G + ++PP+ L + KT+
Sbjct: 449 NFVDG----------------------SVSGCSTNNLNNPPFTPRI--LDGYLFCKTLCM 484
Query: 536 SAYHYNGVLEYDAHSIYGFSQSIATHKALLGL-EGKRPFILSRSTFVGSGHYAAHWTGDN 594
A + G +YD H++YG+S ++AT +A + KR FIL+RSTF GSG +AAHW GDN
Sbjct: 485 DAVQHWGK-QYDIHNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDN 543
Query: 595 KGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANY 654
TW+DL++SI +L F +FG+PMVG DICGF EELC RW+++GAFYPFSR+H
Sbjct: 544 TATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQ 603
Query: 655 YSPRQELYQWES---VAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPNYV 711
Q+ + + + S+R+ L +RY LLP+LYTL + AH G +ARPL F
Sbjct: 604 GYKDQDPASFGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLLHEFYEDN 663
Query: 712 ECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQAISSKDGKFVTLDAP 771
++V QFL G L+++PVL++G +V A P WY+ +Q K + V ++ P
Sbjct: 664 STWDVHQQFLWGPGLLITPVLDEGAEKVMAYVPDAVWYDYETGSQVRWRK--QKVEMELP 721
Query: 772 LHVVNVHLYQNTILPMQQGGLISKEARMTPFSLVVTFPAGASGVQAKGKLYLDEDELPEM 831
+ +HL I P QQ + +R P L++ +AKG+L+ D+ E +
Sbjct: 722 GDKIGLHLRGGYIFPTQQPNTTTLASRKNPLGLIIALDENK---EAKGELFWDDGETKDT 778
Query: 832 KLGNGYSTYVDFFATTGNGTVKIWSEVQEGKFALSKGWIIDSVTVLGLGGSGKASTLEIN 891
+ N +F T V I + + + + +LG T++ N
Sbjct: 779 -VANKVYLLCEFSVTQNRLEVNI----SQSTYKDPNNLAFNEIKILGTEEPSNV-TVKHN 832
Query: 892 GSPTNANSKIEFNAS 906
G P+ + + ++++
Sbjct: 833 GVPSQTSPTVTYDSN 847
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 279/855 (32%), Positives = 431/855 (50%), Gaps = 83/855 (9%)
Query: 67 VDGGILGHLQVKEKNNIYGPDIPLLQLYVKHETEDRLRVHITDAQKQRWEVPYNLLPREQ 126
+ G L+ + ++G ++ + L +++T +R +TD R+EVP+
Sbjct: 61 TNAGFTARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLTDQTNNRFEVPH------- 113
Query: 127 PPKLKQTIGRTRKNPIAVSDYSSNGLIFSYSADPFSFAVKRKSNGETLFNTSSDESDPFG 186
+ + N A Y S PFS V R+SN LF++S G
Sbjct: 114 -----EHVQSFSGNAAASLTYQ-----VEISRQPFSIKVTRRSNNRVLFDSS------IG 157
Query: 187 PMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPND----PYTLYTTDVSAINLNTD 242
P++F DQ+L++ST+LP ++YGLGE H + Y +D + ++ D + T+
Sbjct: 158 PLLFADQFLQLSTRLPS-TNVYGLGE----HVHQQYRHDMNWKTWPIFNRDTTPNGNGTN 212
Query: 243 LYGSHPVYMDLRNVNGEGAAHGVLLLSSNGMDVFYK-GTSLTYKIIGGVFDFYFFAGPSP 301
LYG+ ++ L + G + GV L++SN M+V + ++TY+ IGG+ DFY F G +P
Sbjct: 213 LYGAQTFFLCLED--ASGLSFGVFLMNSNAMEVVLQPAPAITYRTIGGILDFYVFLGNTP 270
Query: 302 LAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIWNDDDH 361
VV +Y IGRPA YW+LGFH R+ Y L + +VVE + A++P DV D D+
Sbjct: 271 EQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREVVERNRAAQLPYDVQHADIDY 330
Query: 362 MDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSS----YGVYQRGIAN 417
MD +DFT + ++ F+ ++H G K ++I+DP I NSS YG Y RG
Sbjct: 331 MDERRDFTYDSVDF--KGFPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDM 388
Query: 418 DVFIKYEG--EPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNEAS 475
+++ P + +VWPG FPD+ NP WW E FH V DG+WIDMNE S
Sbjct: 389 KIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELFHNQVEFDGIWIDMNEVS 448
Query: 476 NFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIAT 535
NF G + ++PP+ L + KT+
Sbjct: 449 NFVDG----------------------SVSGCSTNNLNNPPFTPRI--LDGYLFCKTLCM 484
Query: 536 SAYHYNGVLEYDAHSIYGFSQSIATHKALLGL-EGKRPFILSRSTFVGSGHYAAHWTGDN 594
A + G +YD H++YG+S ++AT +A + KR FIL+RSTF GSG +AAHW GDN
Sbjct: 485 DAVQHWGK-QYDIHNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLGDN 543
Query: 595 KGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANY 654
TW+DL++SI +L F +FG+PMVG DICGF EELC RW+++GAFYPFSR+H
Sbjct: 544 TATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHNGQ 603
Query: 655 YSPRQELYQWES---VAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPNYV 711
Q+ + + + S+R+ L +RY LLP+LYTL + AH G +ARPL F
Sbjct: 604 GYKDQDPASFGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLLHEFYEDN 663
Query: 712 ECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQAISSKDGKFVTLDAP 771
++V QFL G L+++PVL++G +V A P WY+ +Q K + V ++ P
Sbjct: 664 STWDVHQQFLWGPGLLITPVLDEGAEKVMAYVPDAVWYDYETGSQVRWRK--QKVEMELP 721
Query: 772 LHVVNVHLYQNTILPMQQGGLISKEARMTPFSLVVTFPAGASGVQAKGKLYLDEDELPEM 831
+ +HL I P QQ + +R P L++ +AKG+L+ D+ E +
Sbjct: 722 GDKIGLHLRGGYIFPTQQPNTTTLASRKNPLGLIIALDENK---EAKGELFWDDGETKDT 778
Query: 832 KLGNGYSTYVDFFATTGNGTVKIWSEVQEGKFALSKGWIIDSVTVLGLGGSGKASTLEIN 891
+ N +F T V I + + + + +LG T++ N
Sbjct: 779 -VANKVYLLCEFSVTQNRLEVNI----SQSTYKDPNNLAFNEIKILGTEEPSNV-TVKHN 832
Query: 892 GSPTNANSKIEFNAS 906
G P+ + + ++++
Sbjct: 833 GVPSQTSPTVTYDSN 847
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 261/765 (34%), Positives = 390/765 (50%), Gaps = 96/765 (12%)
Query: 77 VKEKNNIYG---PDIPL--LQLYVKHETEDRLRVHITDAQKQRWEVPYNLLPREQPPKLK 131
+ K+++Y P P+ L+L V + + L+ I D K R+EVP L P +
Sbjct: 68 ISLKSSVYANAFPSTPVNPLRLDVTYHKNEMLQFKIYDPNKNRYEVPVPL----NIPSMP 123
Query: 132 QTIGRTRKNPIAVSDYSSNGLIFSYSADPFSFAVKRKSNGETLFNTSSDESDPFGPMVFK 191
+ + + + +PF ++RKS G ++ +S G F
Sbjct: 124 SSTPEGQLYDVLIK------------KNPFGIEIRRKSTGTIIW-----DSQLLG-FTFS 165
Query: 192 DQYLEISTKLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDVSAINLNTDLYGSHPVYM 251
D ++ IST+LP LYG GE + + +++ D + YG HP YM
Sbjct: 166 DMFIRISTRLPS-KYLYGFGETEHRSYRRDLEWHTWGMFSRD-QPPGYKKNSYGVHPYYM 223
Query: 252 DLRNVNGEGAAHGVLLLSSNGMDVFYKGT-SLTYKIIGGVFDFYFFAGPSPLAVVDQYTA 310
L +G+AHGVLLL+SN MDV ++ +LTY+ GGV DFY F GP+P V QYT
Sbjct: 224 GLEE---DGSAHGVLLLNSNAMDVTFQPLPALTYRTTGGVLDFYVFLGPTPELVTQQYTE 280
Query: 311 FIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIWNDDDHMDGHKDFTL 370
IGRP +PYWSLGF CR+GY N S + + + A+IP DV ++D D+M+ DFTL
Sbjct: 281 LIGRPVMVPYWSLGFQLCRYGYQNDSEIASLYDEMVAAQIPYDVQYSDIDYMERQLDFTL 340
Query: 371 NPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSS--YGVYQRGIANDVFIKY--EGE 426
+P P A + ++ GM+ I+I+DP I N + Y + RG+ +DVFIKY +G+
Sbjct: 341 SPKFAGFP---ALINRMKADGMRVILILDPAISGNETQPYPAFTRGVEDDVFIKYPNDGD 397
Query: 427 PYLAQVWP---------------------GAVNFPDFLNPKTVSWWGDEIRRFH------ 459
+VWP V FPDF T WW EI +
Sbjct: 398 IVWGKVWPDFPDVVVNGSLDWDSQVELYRAYVAFPDFFRNSTAKWWKREIEELYNNPQNP 457
Query: 460 -ELVPVDGLWIDMNEASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYK 518
+ DG+WIDMNE S+F +G PG C++ + + PPY
Sbjct: 458 ERSLKFDGMWIDMNEPSSFVNG------------AVSPG------CRDASL---NHPPYM 496
Query: 519 INASGLQVPIGFKTIATSAYHY----NGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFI 574
+ + KT+ + + V Y+ H++YG+SQ+ T++A+ + G+R +
Sbjct: 497 PHLESRDRGLSSKTLCMESQQILPDGSLVQHYNVHNLYGWSQTRPTYEAVQEVTGQRGVV 556
Query: 575 LSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEEL 634
++RSTF SG +A HW GDN W+ LK SI M+ F +FG+ G+DICGF+ E+
Sbjct: 557 ITRSTFPSSGRWAGHWLGDNTAAWDQLKKSIIGMMEFSLFGISYTGADICGFFQDAEYEM 616
Query: 635 CNRWIEVGAFYPFSRDHANYYSPRQELYQWE-SVAESARNALGMRYKLLPFLYTLNYEAH 693
C RW+++GAFYPFSR+H + RQ+ W+ + +R L RY LLP+LYTL ++AH
Sbjct: 617 CVRWMQLGAFYPFSRNHNTIGTRRQDPVSWDVAFVNISRTVLQTRYTLLPYLYTLMHKAH 676
Query: 694 LSGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFD 753
G + RPL F + +++ +QFLLG + +VSPVLE+ V A FP WY+ +
Sbjct: 677 TEGVTVVRPLLHEFVSDQVTWDIDSQFLLGPAFLVSPVLERNARNVTAYFPRARWYDYY- 735
Query: 754 MTQAISSKDGKFVTLDAPLHVVNVHLYQNTILPMQQGGLISKEAR 798
T + G++ TL APL +N+H+ ILP Q+ L + +R
Sbjct: 736 -TGVDINARGEWKTLPAPLDHINLHVRGGYILPWQEPALNTHLSR 779
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 246 bits (629), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 176/623 (28%), Positives = 300/623 (48%), Gaps = 65/623 (10%)
Query: 178 SSDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDVSAI 237
+++E+ P+G + K+ + + + +D +YGLGE+ + + Y Y ++ +A
Sbjct: 25 TAEEAFPYGEISQKEGFA-FTYIMDEDDIVYGLGESNRGINKRGY------CYISNCTAD 77
Query: 238 NLNTD----LYGSHPVYMDLRNVNGEGAAHGVLLL--SSNGMDVFY-KGTSLTYKIIGGV 290
++T+ LYG+H + V+G+ G+ S D+ Y + +L
Sbjct: 78 PIHTEDKRSLYGAHNFII----VSGK-TTFGLFFDYPSKLTFDIGYTRMDTLKVSCENAD 132
Query: 291 FDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKAKI 350
D Y G + +V Q+ IGR P ++ GF Q RWGY V + Y++ I
Sbjct: 133 LDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHI 192
Query: 351 PLDVIWNDDDHMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSYGV 410
P+D+I+ D D+M KDFT+N N+P F++++ ++ I IID G+ V Y V
Sbjct: 193 PIDMIYMDIDYMQDFKDFTVNEKNFP--DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEV 250
Query: 411 YQRGIANDVFIKYE-GEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGLWI 469
Y+ G+ N+ F K E G ++A VWPG +FPD LNP+ W+GD+ R F ++G W
Sbjct: 251 YEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYR-FLIDQGIEGFWN 309
Query: 470 DMNE------------ASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDPPY 517
DMNE A F K +GK P W K+I + D +
Sbjct: 310 DMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHP------WAMQAKMKDIVNSPEDYKRF 363
Query: 518 KINASGLQVPIGFKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFIL-S 576
N +G ++ ++ V H+++G++ + A +A ++ ++ F++ S
Sbjct: 364 YHNVNGKKI------------RHDKV-----HNLFGYNMTRAAGEAFERIDPEKRFLMFS 406
Query: 577 RSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCN 636
RS+++G Y W GDNK W + ++ + + + G G+D+ GF T +L
Sbjct: 407 RSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLL 466
Query: 637 RWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSG 696
R++ +G F P RDHA + QE YQ+E++ E R+ + RY+L+P+LY+ +A L+
Sbjct: 467 RFLALGVFTPLMRDHAAEGTREQECYQFENI-EDFRSVINARYRLVPYLYSEYMKAALND 525
Query: 697 APIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQ 756
+PL F +P+ V Q +LG+ +M++PV EQ P + F
Sbjct: 526 DMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMPDG 585
Query: 757 AISSKDGKFVTLDAPLHVVNVHL 779
+IS + L+ +H V+V L
Sbjct: 586 SISEE-----VLEKGVHYVDVAL 603
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 176/625 (28%), Positives = 299/625 (47%), Gaps = 69/625 (11%)
Query: 178 SSDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLY------PNDPYTLYT 231
+++E+ P+G + K+ + + + +D +YGLGE+ + + Y +DP ++T
Sbjct: 25 TAEEAFPYGEISQKEGFA-FTYIMDEDDIVYGLGESNRGINKRGYCYISNCTDDP--IHT 81
Query: 232 TDVSAINLNTDLYGSHPVYMDLRNVNGEGAAHGVLLL--SSNGMDVFY-KGTSLTYKIIG 288
D + LYG+H + V+G+ G+ S D+ Y + +L
Sbjct: 82 EDKRS------LYGAHNFII----VSGK-TTFGLFFDYPSKLTFDIGYTRMDTLKVSCEN 130
Query: 289 GVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKA 348
D Y G + +V Q+ IGR P ++ GF Q R+GY V + Y++
Sbjct: 131 ADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYREN 190
Query: 349 KIPLDVIWNDDDHMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSY 408
IP+D+I+ D D+M KDFT+N N+P F++++ ++ I IID G+ V Y
Sbjct: 191 HIPIDMIYMDIDYMQDFKDFTVNEKNFP--DFPEFVKEMKDQELRLIPIIDAGVKVEKGY 248
Query: 409 GVYQRGIANDVFIKYE-GEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGL 467
VY+ G+ N+ F K E G ++A VWPG +FPD LNP+ W+GD+ R F ++G
Sbjct: 249 EVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYR-FLIDQGIEGF 307
Query: 468 WIDMNE------------ASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDP 515
W DMNE A F K +GK P W K+I + D
Sbjct: 308 WNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHP------WAMQAKMKDIVNSPEDYK 361
Query: 516 PYKINASGLQVPIGFKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFIL 575
+ N +G ++ ++ V H+++G++ + A +A ++ ++ F++
Sbjct: 362 RFYHNVNGKKI------------RHDKV-----HNLFGYNMTRAAGEAFERIDPEKRFLM 404
Query: 576 -SRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEEL 634
SRS+++G Y W GDNK W + ++ + + + G G+D+ GF T +L
Sbjct: 405 FSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDL 464
Query: 635 CNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHL 694
R++ +G F P RDHA + QE YQ+E++ E R+ + RY+L+P+LY+ +A L
Sbjct: 465 LLRFLALGVFTPLMRDHAAEGTREQECYQFENI-EDFRSVINARYRLVPYLYSEYMKAAL 523
Query: 695 SGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDM 754
+ +PL F +P+ V Q +LG+ +M++PV EQ P + F
Sbjct: 524 NDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMP 583
Query: 755 TQAISSKDGKFVTLDAPLHVVNVHL 779
+IS + L+ +H V+V L
Sbjct: 584 DGSISEE-----VLEKGVHYVDVAL 603
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 176/625 (28%), Positives = 299/625 (47%), Gaps = 69/625 (11%)
Query: 178 SSDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLY------PNDPYTLYT 231
+++E+ P+G + K+ + + + +D +YGLGE+ + + Y +DP ++T
Sbjct: 25 TAEEAFPYGEISQKEGFA-FTYIMDEDDIVYGLGESNRGINKRGYCYISNCTDDP--IHT 81
Query: 232 TDVSAINLNTDLYGSHPVYMDLRNVNGEGAAHGVLLL--SSNGMDVFY-KGTSLTYKIIG 288
D + LYG+H + V+G+ G+ S D+ Y + +L
Sbjct: 82 EDKRS------LYGAHNFII----VSGK-TTFGLFFDYPSKLTFDIGYTRMDTLKVSCEN 130
Query: 289 GVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKA 348
D Y G + +V Q+ IGR P ++ GF Q R+GY V + Y++
Sbjct: 131 ADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYREN 190
Query: 349 KIPLDVIWNDDDHMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSY 408
IP+D+I+ D D+M KDFT+N N+P F++++ ++ I IID G+ V Y
Sbjct: 191 HIPIDMIYMDIDYMQDFKDFTVNEKNFP--DFPEFVKEMKDQELRLIPIIDAGVKVEKGY 248
Query: 409 GVYQRGIANDVFIKYE-GEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGL 467
VY+ G+ N+ F K E G ++A VWPG +FPD LNP+ W+GD+ R F ++G
Sbjct: 249 EVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYR-FLIDQGIEGF 307
Query: 468 WIDMNE------------ASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDP 515
W DMNE A F K +GK P W K+I + D
Sbjct: 308 WNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHP------WAMQAKMKDIVNSPEDYK 361
Query: 516 PYKINASGLQVPIGFKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFIL 575
+ N +G ++ ++ V H+++G++ + A +A ++ ++ F++
Sbjct: 362 RFYHNVNGKKI------------RHDKV-----HNLFGYNMTRAAGEAFERIDPEKRFLM 404
Query: 576 -SRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEEL 634
SRS+++G Y W GDNK W + ++ + + + G G+D+ GF T +L
Sbjct: 405 FSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDL 464
Query: 635 CNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHL 694
R++ +G F P RDHA + QE YQ+E++ E R+ + RY+L+P+LY+ +A L
Sbjct: 465 LLRFLALGVFTPLMRDHAAEGTREQECYQFENI-EDFRSVINARYRLVPYLYSEYMKAAL 523
Query: 695 SGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDM 754
+ +PL F +P+ V Q +LG+ +M++PV EQ P + F
Sbjct: 524 NDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMP 583
Query: 755 TQAISSKDGKFVTLDAPLHVVNVHL 779
+IS + L+ +H V+V L
Sbjct: 584 DGSISEE-----VLEKGVHYVDVAL 603
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 176/625 (28%), Positives = 298/625 (47%), Gaps = 69/625 (11%)
Query: 178 SSDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLY------PNDPYTLYT 231
+++E+ P+G + K+ + + + +D +YGLGE+ + + Y +DP ++T
Sbjct: 25 TAEEAFPYGEISQKEGFA-FTYIMDEDDIVYGLGESNRGINKRGYCYISNCTDDP--IHT 81
Query: 232 TDVSAINLNTDLYGSHPVYMDLRNVNGEGAAHGVLLL--SSNGMDVFY-KGTSLTYKIIG 288
D + LYG+H + V+G+ G+ S D+ Y + +L
Sbjct: 82 EDKRS------LYGAHNFII----VSGK-TTFGLFFDYPSKLTFDIGYTRMDTLKVSCEN 130
Query: 289 GVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKA 348
D Y G + +V Q+ IGR P ++ GF Q RWGY V + Y++
Sbjct: 131 ADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYREN 190
Query: 349 KIPLDVIWNDDDHMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSY 408
IP+D+I+ D D+M KDFT+N N+ P F++++ ++ I IID G+ V Y
Sbjct: 191 HIPIDMIYMDIDYMQDFKDFTVNEKNF--PDFPEFVKEMKDQELRLIPIIDAGVKVEKGY 248
Query: 409 GVYQRGIANDVFIKYE-GEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGL 467
VY+ G+ N+ F K E G ++A VWPG +FPD LNP+ W+GD+ RF ++G
Sbjct: 249 EVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKY-RFLIDQGIEGF 307
Query: 468 WIDMN------------EASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDP 515
W DMN EA F K +GK P W K+I + D
Sbjct: 308 WNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHP------WAMQAKMKDIVNSPEDYK 361
Query: 516 PYKINASGLQVPIGFKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFIL 575
+ N +G ++ ++ V H+++G++ + A +A ++ ++ F++
Sbjct: 362 RFYHNVNGKKI------------RHDKV-----HNLFGYNMTRAAGEAFERIDPEKRFLM 404
Query: 576 -SRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEEL 634
SRS+++G Y W G NK W + ++ + + + G G+D+ GF T +L
Sbjct: 405 FSRSSYIGMHRYGGIWMGANKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDL 464
Query: 635 CNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHL 694
R++ +G F P RDHA + QE YQ+E++ E R+ + RY+L+P+LY+ +A L
Sbjct: 465 LLRFLALGVFTPLMRDHAAEGTREQECYQFENI-EDFRSVINARYRLVPYLYSEYMKAAL 523
Query: 695 SGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDM 754
+ +PL F +P+ V Q +LG+ +M++PV EQ P + F
Sbjct: 524 NDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMP 583
Query: 755 TQAISSKDGKFVTLDAPLHVVNVHL 779
+IS + L+ +H V+V L
Sbjct: 584 DGSISEE-----VLEKGVHYVDVAL 603
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 176/625 (28%), Positives = 298/625 (47%), Gaps = 69/625 (11%)
Query: 178 SSDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLY------PNDPYTLYT 231
+++E+ P+G + K+ + + + +D +YGLGE+ + + Y +DP ++T
Sbjct: 25 TAEEAFPYGEISQKEGFA-FTYIMDEDDIVYGLGESNRGINKRGYCYISNCTDDP--IHT 81
Query: 232 TDVSAINLNTDLYGSHPVYMDLRNVNGEGAAHGVLLL--SSNGMDVFY-KGTSLTYKIIG 288
D + LYG+H + V+G+ G+ S D+ Y + +L
Sbjct: 82 EDKRS------LYGAHNFII----VSGK-TTFGLFFDYPSKLTFDIGYTRMDTLKVSCEN 130
Query: 289 GVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKA 348
D Y G + +V Q+ IGR P ++ GF Q RWGY V + Y++
Sbjct: 131 ADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYREN 190
Query: 349 KIPLDVIWNDDDHMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSY 408
IP+D+I+ D D+M KDFT+N N+P F++++ ++ I IID G+ V Y
Sbjct: 191 HIPIDMIYMDIDYMQDFKDFTVNEKNFP--DFPEFVKEMKDQELRLIPIIDAGVKVEKGY 248
Query: 409 GVYQRGIANDVFIKYE-GEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGL 467
VY+ G+ N+ F K E G ++A VWPG +FPD LNP+ W+GD+ R F ++G
Sbjct: 249 EVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYR-FLIDQGIEGF 307
Query: 468 WIDMNE------------ASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDP 515
W MNE A F K +GK P W K+I + D
Sbjct: 308 WNAMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHP------WAMQAKMKDIVNSPEDYK 361
Query: 516 PYKINASGLQVPIGFKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFIL 575
+ N +G ++ ++ V H+++G++ + A +A ++ ++ F++
Sbjct: 362 RFYHNVNGKKI------------RHDKV-----HNLFGYNMTRAAGEAFERIDPEKRFLM 404
Query: 576 -SRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEEL 634
SRS+++G Y W GDNK W + ++ + + + G G+D+ GF T +L
Sbjct: 405 FSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDL 464
Query: 635 CNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHL 694
R++ +G F P RDHA + QE YQ+E++ E R+ + RY+L+P+LY+ +A L
Sbjct: 465 LLRFLALGVFTPLMRDHAAEGTREQECYQFENI-EDFRSVINARYRLVPYLYSEYMKAAL 523
Query: 695 SGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDM 754
+ +PL F +P+ V Q +LG+ +M++PV EQ P + F
Sbjct: 524 NDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEMKFIKFMP 583
Query: 755 TQAISSKDGKFVTLDAPLHVVNVHL 779
+IS + L+ +H V+V L
Sbjct: 584 DGSISEE-----VLEKGVHYVDVAL 603
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 232 bits (591), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 166/618 (26%), Positives = 288/618 (46%), Gaps = 76/618 (12%)
Query: 197 ISTKLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDVSAINLNTD-LYGSHPVYMDLRN 255
+ L + GLGE K Y +Y D A D LY S P+++ +++
Sbjct: 54 VEKSLDLKEHIIGLGEKAFELDRK---RKRYVMYNVDAGAYKKYQDPLYVSIPLFISVKD 110
Query: 256 VNGEGAAHGVLLLSSNGMDVFYKGTSLTYKIIGGV----FDFYFFAGPSPLAVVDQYTAF 311
G A G S++ + +F G K+I + +FY GP V+++YT
Sbjct: 111 ----GVATGYFFNSASKV-IFDVGLEEYDKVIVTIPEDSVEFYVIEGPRIEDVLEKYTEL 165
Query: 312 IGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKAKIPLDVIWNDDDHMDGHKDFTLN 371
G+P P W+ G+ R+ Y+ V ++V+ +K + ++ D +MD +K FT +
Sbjct: 166 TGKPFLPPMWAFGYMISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWH 225
Query: 372 PTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSYGVYQRGIANDVFIKYEGEPYLAQ 431
P +P PK L ++++HK +K I I+D GI V+ +Y + G+ I+ GE ++ +
Sbjct: 226 PYRFPEPKKL--IDELHKRNVKLITIVDHGIRVDQNYSPFLSGMGKFCEIE-SGELFVGK 282
Query: 432 VWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNEASNFCSGLCKIPKGKQCP 491
+WPG +PDF T WW I + VDG+W+DMNE ++F
Sbjct: 283 MWPGTTVYPDFFREDTREWWAGLISEWLSQ-GVDGIWLDMNEPTDFSR------------ 329
Query: 492 TGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFK------TIATSAYHY---NG 542
++ +++ + +P+ F+ T + HY
Sbjct: 330 ---------AIEIRDVLSS---------------LPVQFRDDRLVTTFPDNVVHYLRGKR 365
Query: 543 VLEYDAHSIYGFSQSIATHKALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLK 602
V + Y +++AT K FILSR+ + G YA WTGDN +W+DLK
Sbjct: 366 VKHEKVRNAYPLYEAMATFKGFRTSHRNEIFILSRAGYAGIQRYAFIWTGDNTPSWDDLK 425
Query: 603 YSISTMLNFGIFGVPMVGSDICGFYPAPTEELCN------RWIEVGAFYPFSRDH-ANYY 655
+ +L I GVP VG DI GF E+ N ++ + F+PF R H A
Sbjct: 426 LQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYRSHKATDG 485
Query: 656 SPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPNYVECYN 715
+ ++ + E + + +RYK LP++Y+L EA G P+ RPLF+ F + + Y
Sbjct: 486 IDTEPVFLPDYYKEKVKEIVELRYKFLPYIYSLALEASEKGHPVIRPLFYEFQDDDDMYR 545
Query: 716 VSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQAISSKDGKFVTLDAPLHVV 775
+ ++++G L+ +P++ + +S++ L P G WYN ++ + I+ K ++ H +
Sbjct: 546 IEDEYMVGKYLLYAPIVSKEESRLVTL-PRGKWYNYWN-GEIINGK-----SVVKSTHEL 598
Query: 776 NVHLYQNTILPMQQGGLI 793
++L + +I+P++ LI
Sbjct: 599 PIYLREGSIIPLEGDELI 616
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 174/625 (27%), Positives = 290/625 (46%), Gaps = 69/625 (11%)
Query: 178 SSDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLY------PNDPYTLYT 231
+++E+ P+G + K+ + + +D +YGLGE+ + + Y +DP ++T
Sbjct: 25 TAEEAFPYGEISQKEGFA-FTYIXDEDDIVYGLGESNRGINKRGYCYISNCTDDP--IHT 81
Query: 232 TDVSAINLNTDLYGSHPVYMDLRNVNGEGAAHGVLLL--SSNGMDVFY-KGTSLTYKIIG 288
D + LYG+H + V+G+ G+ S D+ Y + +L
Sbjct: 82 EDKRS------LYGAHNFII----VSGK-TTFGLFFDYPSKLTFDIGYTRXDTLKVSCEN 130
Query: 289 GVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKKA 348
D Y G + +V Q+ IGR P ++ GF Q RWGY V + Y++
Sbjct: 131 ADLDIYVIEGENAYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYREN 190
Query: 349 KIPLDVIWNDDDHMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSY 408
IP+D I+ D D+ KDFT+N N+P F+++ ++ I IID G+ V Y
Sbjct: 191 HIPIDXIYXDIDYXQDFKDFTVNEKNFP--DFPEFVKEXKDQELRLIPIIDAGVKVEKGY 248
Query: 409 GVYQRGIANDVFIKYE-GEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGL 467
VY+ G+ N+ F K E G ++A VWPG +FPD LNP+ W+GD+ R F ++G
Sbjct: 249 EVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDXLNPEARKWFGDKYR-FLIDQGIEGF 307
Query: 468 WIDMNE------------ASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDP 515
W D NE A F K +GK P W K+I + D
Sbjct: 308 WNDXNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHP------WAXQAKXKDIVNSPEDYK 361
Query: 516 PYKINASGLQVPIGFKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFI- 574
+ N +G ++ ++ V H+++G++ + A +A ++ ++ F+
Sbjct: 362 RFYHNVNGKKI------------RHDKV-----HNLFGYNXTRAAGEAFERIDPEKRFLX 404
Query: 575 LSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEEL 634
SRS+++G Y W GDNK W + ++ + + G G+D+ GF T +L
Sbjct: 405 FSRSSYIGXHRYGGIWXGDNKSWWSHILLNLKXLPSLNXCGFXYTGADLGGFGDDTTRDL 464
Query: 635 CNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHL 694
R++ +G F P RDHA + QE YQ+E++ E R+ + RY+L+P+LY+ +A L
Sbjct: 465 LLRFLALGVFTPLXRDHAAEGTREQECYQFENI-EDFRSVINARYRLVPYLYSEYXKAAL 523
Query: 695 SGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDM 754
+ +PL F +P+ V Q LG+ + ++PV EQ P + F
Sbjct: 524 NDDXYFKPLGFVYPDDKXAIRVEDQLXLGNEIXIAPVYEQNARGRYVYLPEEXKFIKFXP 583
Query: 755 TQAISSKDGKFVTLDAPLHVVNVHL 779
+IS + L+ +H V+V L
Sbjct: 584 DGSISEE-----VLEKGVHYVDVAL 603
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 142/566 (25%), Positives = 232/566 (40%), Gaps = 103/566 (18%)
Query: 288 GGVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNLSVVEDVVENYKK 347
G D+YF AG + ++ Y G+ +P W+ GF Q R Y + + ++ Y+
Sbjct: 400 GKAIDYYFVAGDTKDDIISGYRQLTGKSVMLPKWAYGFWQSRERYKSSDEIIQNLKEYRD 459
Query: 348 AKIPLDVI------WNDDDHMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPG 401
KIP+D I W +D G DF + +P PK A ++K+H + + ++ + P
Sbjct: 460 RKIPIDNIVLDWSYWPEDAW--GSHDF--DKQFFPDPK--ALVDKVHAMNAQIMISVWPK 513
Query: 402 I--GVNSSYGVYQRGIANDVFIKYEGEPYLAQVWPGAVN-FPDFLNPKTVSWWGDEIRRF 458
++ + +G +F + E L + G +N F D +P+ + + +IR
Sbjct: 514 FYPTTDNYKELNAKGF---MFNRNLDEKNLDWIGKGYLNAFYDPFSPEATAIFWKQIRDK 570
Query: 459 HELVPVDGLWIDMNEASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYK 518
+ D W+D E + S L K +W P
Sbjct: 571 INVHGFDAWWLDAVEP-DIHSNLT------------------------FEKRKWLMTP-- 603
Query: 519 INASGLQVPIGFKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEG-KRPFILSR 577
NA G NG ++A+++ + ++ L +G KR FIL+R
Sbjct: 604 -NARG-----------------NGAEIFNAYAV---PHAEGVYQGELATDGDKRSFILTR 642
Query: 578 STFVGSGHY-AAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPT----- 631
S F G +A W+GD W D+K I+ + + GV DI GF P
Sbjct: 643 SGFGGIQRTGSAIWSGDIVSRWSDMKDQIAAGIGTNLAGVTNWTFDIGGFTPEDRFRHGK 702
Query: 632 ------------------EELCNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARN 673
+EL RW + GAF P R H +P +E++ N
Sbjct: 703 KGFVGSWTALDAEQVDEWQELNTRWYQFGAFVPLYRSHGQ--NPYREIFNIADEGTEVYN 760
Query: 674 AL----GMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVS 729
A+ +RY L+P++YTL + + I R L FPN + ++++TQ++ G + +V+
Sbjct: 761 AMVWYTKLRYYLMPYIYTLGGDTYHKDGTIMRGLVMDFPNDRKAWDINTQYMFGPAFLVN 820
Query: 730 PVLEQGKSQVKALFPPGS-WYNVFDMTQAISSKDGKFVTLDAPLHVVNVHLYQNTILPMQ 788
PV E P GS WYN + + G+ +T DAPL V + + I+P
Sbjct: 821 PVYEYKARSRDVYLPAGSDWYNFYTGEKLAG---GQTITADAPLARVPLFVKAGAIVPT- 876
Query: 789 QGGLISKEARMTPFSLVVTFPAGASG 814
G LI L++T GA+G
Sbjct: 877 -GPLIQHVDEGLNSPLLITVYTGANG 901
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 130/262 (49%), Gaps = 7/262 (2%)
Query: 571 RPFILSRSTFVGSGHYAA-HWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPA 629
RPFI+ R+ FVGS Y WTGD TW L + L + G + SD+ GF
Sbjct: 457 RPFIMMRAGFVGSQRYGMIPWTGDVSRTWGGLASQVELALQMSLLGFGYIHSDLGGFADG 516
Query: 630 PT--EELCNRWIEVGAFYPFSRDHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYT 687
T +E+ RW++ G F P R H + P + ++Q E R + +RY++LP++YT
Sbjct: 517 ETLDKEMYIRWLQYGVFQPVYRPHGQDHIPSEPVFQDEETKAILRPLVKLRYRMLPYIYT 576
Query: 688 LNYEAHLSGAPIARPLFFSFPNYVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGS 747
Y+ L+G P+ RPLFFS + T + G SL+V+P+ + G V P G
Sbjct: 577 AAYQNTLTGMPLMRPLFFSDEKNPALIDNKTSYFWGDSLLVTPITQAGVESVSIPAPKGV 636
Query: 748 WYNVFDMTQAISSKDGKFVTLDAPLHVVNVHLYQNTILPMQQGGLISKEARMTPFSLVVT 807
W++ + T+ DG +TL LH + V + +P +++ R SL +
Sbjct: 637 WFDFWKDTR--YQTDGAPLTLPTDLHTIPVLVKAGAFMPYVPAVSTTEDYRSD--SLEIH 692
Query: 808 FPAGASGVQAKGKLYLDEDELP 829
+ A AS A+G+++ D+ + P
Sbjct: 693 YYADASVPLAQGEIFEDDGKDP 714
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 18/215 (8%)
Query: 269 SSNGMDVFYKGTS-LTYKIIGGVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQ 327
+S MD+ + L + G + AG S ++++ +T GR P W+LG
Sbjct: 209 ASGAMDIGKTESDILQLEAKSGRSAYILVAGNSYPSLIENFTQVTGRQPLPPRWALGSFA 268
Query: 328 CRWGYHNLSVVEDVVENYKKAKIPLDVI-----WNDDDHMDGHK-DFTLNPTNYPRPKLL 381
R+GY + + V+ YK PLD I W D + GH + + N+P P L
Sbjct: 269 SRFGYRSEAETRATVQKYKTEDFPLDTIVLDLYWFGKD-IKGHMGNLDWDKENFPTP--L 325
Query: 382 AFLEKIHKIGMKYIVIIDPGIGVNSSY---GVYQRGIANDVFIKYEGEPYLAQVWPGAVN 438
+ + G+K ++I +P + +S V + +A D +G+P +++ G
Sbjct: 326 DMMADFKQQGVKTVLITEPFVLTSSKRWDDAVKAKALAKDP----QGQPKAFELYFGNGG 381
Query: 439 FPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNE 473
D + K S W I + V G W D+ E
Sbjct: 382 IIDVFS-KEGSRWFSSIYKDLSKQGVAGWWGDLGE 415
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 154/712 (21%), Positives = 265/712 (37%), Gaps = 94/712 (13%)
Query: 60 RLISIEEVDGGILGHLQVKE-KNNIYGPDIPLLQLYVKHETEDRLRVHITDAQKQRWEVP 118
++ +E+ D ++ + ++ + + D PL L E + V I Q P
Sbjct: 21 QVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGP 80
Query: 119 YNLLPREQPPKLKQTIGRTRKNPIAVSDYSSNGLIFSYSADPFSFAVKRKSNGETLFNTS 178
+ P + Q + T +N +++ S L S F +++ NGE + +
Sbjct: 81 H------YPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEF-WSLDFLRNGERITGSQ 133
Query: 179 SDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDVSAIN 238
+ + Y+ L ++YGLGE + T+ T +
Sbjct: 134 VKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGER-----FTALVRNGQTVETWNRDGGT 188
Query: 239 LNTDLYGSHPVYMDLRNVNGEGAAHGVLLLSSNGMDVFYKGTSLTYKIIGGV----FDFY 294
Y + P YM R +GVL+ + F G+ K+ V +++
Sbjct: 189 STEQAYKNIPFYMTNR-------GYGVLVNHPQCVS-FEVGSEKVSKVQFSVESEYLEYF 240
Query: 295 FFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNL--SVVEDVVENYKKAKIPL 352
GP+P AV+D+YT F GRPA P WS G N + V ++ + +PL
Sbjct: 241 VIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPL 300
Query: 353 DVIWNDDDHMDGHK--DFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSYGV 410
V D M + DF +P +P P+ + ++ G+K V I+P IG S V
Sbjct: 301 HVFHFDCFWMKAFQWCDFEWDPLTFPDPE--GMIRRLKAKGLKICVWINPYIGQKSP--V 356
Query: 411 YQRGIANDVFIKY-EGEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGLWI 469
++ +K +G + W + DF NP W+ D+++ + VD
Sbjct: 357 FKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAM-GVDCFKT 415
Query: 470 DMNEASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIG 529
D E +IP Q G+ P
Sbjct: 416 DFGE---------RIPTDVQWFDGSDPQ-------------------------------- 434
Query: 530 FKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFILSRSTFVGSGHYAAH 589
K AY YN ++ G +++ + +RS VG+ + H
Sbjct: 435 -KMHNHYAYIYNELVWNVLKDTVGEEEAV---------------LFARSASVGAQKFPVH 478
Query: 590 WTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSR 649
W GD +E + S+ L+ G+ G DI GF + RW G SR
Sbjct: 479 WGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSR 538
Query: 650 DHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPN 709
H + Y ES + R ++ +++P+LY A+ G P+ R + FP+
Sbjct: 539 LHGSKSYRVPWAYDDES-CDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPD 597
Query: 710 YVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQAISSK 761
C + Q++LG ++MV+PV + V+ P G W +++ + S+
Sbjct: 598 DPACDYLDRQYMLGDNVMVAPVFTEA-GDVQFYLPEGRWTHLWHNDELDGSR 648
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 154/712 (21%), Positives = 265/712 (37%), Gaps = 94/712 (13%)
Query: 60 RLISIEEVDGGILGHLQVKE-KNNIYGPDIPLLQLYVKHETEDRLRVHITDAQKQRWEVP 118
++ +E+ D ++ + ++ + + D PL L E + V I Q P
Sbjct: 21 QVFEVEQQDNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGP 80
Query: 119 YNLLPREQPPKLKQTIGRTRKNPIAVSDYSSNGLIFSYSADPFSFAVKRKSNGETLFNTS 178
+ P + Q + T +N +++ S L S F +++ NGE + +
Sbjct: 81 H------YPLNILQDVKVTIENTERYAEFKSGNLSARVSKGEF-WSLDFLRNGERITGSQ 133
Query: 179 SDESDPFGPMVFKDQYLEISTKLPKDASLYGLGENTQPHGIKLYPNDPYTLYTTDVSAIN 238
+ + Y+ L ++YGLGE + T+ T +
Sbjct: 134 VKNNGYVQDTNNQRNYMFERLDLGVGETVYGLGER-----FTALVRNGQTVETWNRDGGT 188
Query: 239 LNTDLYGSHPVYMDLRNVNGEGAAHGVLLLSSNGMDVFYKGTSLTYKIIGGV----FDFY 294
Y + P YM R +GVL+ + F G+ K+ V +++
Sbjct: 189 STEQAYKNIPFYMTNR-------GYGVLVNHPQCVS-FEVGSEKVSKVQFSVESEYLEYF 240
Query: 295 FFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNL--SVVEDVVENYKKAKIPL 352
GP+P AV+D+YT F GRPA P WS G N + V ++ + +PL
Sbjct: 241 VIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPL 300
Query: 353 DVIWNDDDHMDGHK--DFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSYGV 410
V D M + DF +P +P P+ + ++ G+K V I+P IG S V
Sbjct: 301 HVFHFDCFWMKAFQWCDFEWDPLTFPDPE--GMIRRLKAKGLKICVWINPYIGQKSP--V 356
Query: 411 YQRGIANDVFIKY-EGEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIRRFHELVPVDGLWI 469
++ +K +G + W + DF NP W+ D+++ + VD
Sbjct: 357 FKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAM-GVDCFKT 415
Query: 470 DMNEASNFCSGLCKIPKGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIG 529
D E +IP Q G+ P
Sbjct: 416 DFGE---------RIPTDVQWFDGSDPQ-------------------------------- 434
Query: 530 FKTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFILSRSTFVGSGHYAAH 589
K AY YN ++ G +++ + +RS VG+ + H
Sbjct: 435 -KMHNHYAYIYNELVWNVLKDTVGEEEAV---------------LFARSASVGAQKFPVH 478
Query: 590 WTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSR 649
W GD +E + S+ L+ G+ G DI GF + RW G SR
Sbjct: 479 WGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSR 538
Query: 650 DHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPN 709
H + Y ES + R ++ +++P+LY A+ G P+ R + FP+
Sbjct: 539 LHGSKSYRVPWAYDDES-CDVVRFFTQLKCRMMPYLYREAARANARGTPMMRAMMMEFPD 597
Query: 710 YVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQAISSK 761
C + Q++LG ++MV+PV + V+ P G W +++ + S+
Sbjct: 598 DPACDYLDRQYMLGDNVMVAPVFTEA-GDVQFYLPEGRWTHLWHNDELDGSR 648
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 103/456 (22%), Positives = 180/456 (39%), Gaps = 65/456 (14%)
Query: 439 FPDFLNPKTVSWWGDEIRRFHELVPVDGLWIDMNEAS----NFCSGLCKIPKGK----QC 490
FPD+ P WWG+ ++ + +D +W DM + + P G
Sbjct: 512 FPDWGRPDVAEWWGNNYKKLFS-IGLDFVWQDMTVPAMMPHKIGDDINVKPDGNWPNADD 570
Query: 491 PTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAYHYNGVLEYDAHS 550
P+ W +T R+++ + + Q I T+ S G++E +A +
Sbjct: 571 PSNGQYNWKTYHPQVLVTDMRYENHGREPMVT--QRNIHAYTLCEST-RKEGIVE-NADT 626
Query: 551 IYGFSQSIATHKALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLN 610
+ F +R +I+SR ++G+ H+ W GDN T ++ I+ +N
Sbjct: 627 LTKF---------------RRSYIISRGGYIGNQHFGGMWVGDNSTTSNYIQMMIANNIN 671
Query: 611 FGIFGVPMVGSDICGFYPAPTE--------ELCNRWIEVGAFYPFSRDHANYY------- 655
+ +P+VGSDI GF E +L R+++ G P+ R+H + +
Sbjct: 672 MNMSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLLPWFRNHYDRWIESKDHG 731
Query: 656 SPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPI--ARPLFFSFPNYVEC 713
QELY + + ++ R + RY+ LYT Y+ G PI A ++ + N
Sbjct: 732 KDYQELYMYPNEMDTLRKFVEFRYRWQEVLYTAMYQNAAFGKPIIKAASMYNNDSNVRRA 791
Query: 714 YNVSTQFLLGS----SLMVSPVLEQGKSQVKALFPP-GSWYNV---FDMTQAISSKDG-- 763
N FLLG ++ +PV+ + ++ + P WY FD + +G
Sbjct: 792 QN--DHFLLGGHDGYRILCAPVVWENSTERELYLPVLTQWYKFGPDFDTKPLEGAMNGGD 849
Query: 764 KFVTLDAPLHVVNVHLYQNTILPMQ-----QGGLISKEARMTPFSLVVTFPAGASGVQAK 818
+ P + + + ILP + + ++ P V FP G + +A
Sbjct: 850 RIYNYPVPQSESPIFVREGAILPTRYTLNGENKSLNTYTDEDPLVFEV-FPLGNN--RAD 906
Query: 819 GKLYLDEDELPEMKLGNGYSTYVDFFATTGNGTVKI 854
G YLD+ + NG + V A GT I
Sbjct: 907 GMCYLDDGGVTTNAEDNGKFSVVKVAAEQDGGTETI 942
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 3/232 (1%)
Query: 531 KTIATSAYHYNGVLEYDAHSIYGFSQSIATHKALLGLEGKRPFIL-SRSTFVGSGHYAAH 589
+ I T ++G H+ Y + + L G+ +L +RS VG+ + H
Sbjct: 419 ERIPTDVQWFDGSDPQKXHNHYAYIYNELVWNVLKDTVGEEEAVLFARSASVGAQKFPVH 478
Query: 590 WTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSR 649
W GD +E S+ L+ G+ G DI GF + RW G SR
Sbjct: 479 WGGDCYANYESXAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSR 538
Query: 650 DHANYYSPRQELYQWESVAESARNALGMRYKLLPFLYTLNYEAHLSGAPIARPLFFSFPN 709
H + Y ES + R ++ + P+LY A+ G P R FP+
Sbjct: 539 LHGSKSYRVPWAYDDES-CDVVRFFTQLKCRXXPYLYREAARANARGTPXXRAXXXEFPD 597
Query: 710 YVECYNVSTQFLLGSSLMVSPVLEQGKSQVKALFPPGSWYNVFDMTQAISSK 761
C + Q+ LG ++ V+PV + V+ P G W +++ + S+
Sbjct: 598 DPACDYLDRQYXLGDNVXVAPVFTEA-GDVQFYLPEGRWTHLWHNDELDGSR 648
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 29/214 (13%)
Query: 278 KGTSLTYKIIGGVFDFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRW------G 331
K + + + + +++ GP+P AV+D+YT F GRPA P WS G W
Sbjct: 224 KVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGL----WLTTSFTT 279
Query: 332 YHNLSVVEDVVENYKKAKIPLDVIWNDDDHMDGHK--DFTLNPTNYPRPKLLAFLEKIHK 389
++ + V ++ + +PL V D + DF +P +P P+ + ++
Sbjct: 280 NYDEATVNSFIDGXAERNLPLHVFHFDCFWXKAFQWCDFEWDPLTFPDPE--GXIRRLKA 337
Query: 390 IGMKYIVIIDPGIGVNSSYGVYQRGIANDVFIKY-EGEPYLAQVWPGAVNFPDFLNPKTV 448
G+K V I+P IG S V++ +K +G + W + DF NP
Sbjct: 338 KGLKICVWINPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDAC 395
Query: 449 SWWGDEIR------------RFHELVPVDGLWID 470
W+ D+++ F E +P D W D
Sbjct: 396 KWYADKLKGLVAXGVDCFKTDFGERIPTDVQWFD 429
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 361 HMDGHKDFTLNPTNYPRP--KLLAFLEKIHKIGMKYIVIIDPGIGVNSSYGVYQRGIAND 418
H D + DF L + P K+LAF + G+ Y + +DPG + + Y + GI +
Sbjct: 63 HKD-NADFALIGIDRDEPLEKVLAFAKST---GVTYPLGLDPGADIFAKYALRDAGITRN 118
Query: 419 VFIKYEGE 426
V I EG+
Sbjct: 119 VLIDREGK 126
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 338 VEDVVENYKKAKIPLDVIWNDDD---HMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKY 394
+ D + KKA+ N++D +++G + N ++ PRP L +LEK+ G+K
Sbjct: 103 ISDKIIEVKKAE-------NNNDIAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKI 155
Query: 395 IVI 397
I++
Sbjct: 156 IIL 158
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 338 VEDVVENYKKAKIPLDVIWNDDD---HMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKY 394
+ D + KKA+ N++D +++G + N ++ PRP L +LEK+ G+K
Sbjct: 103 ISDKIIEVKKAE-------NNNDIAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKI 155
Query: 395 IVI 397
I++
Sbjct: 156 IIL 158
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 338 VEDVVENYKKAKIPLDVIWNDDD---HMDGHKDFTLNPTNYPRPKLLAFLEKIHKIGMKY 394
+ D + KKA+ N++D +++G + N ++ PRP L +LEK+ G+K
Sbjct: 103 ISDKIIEVKKAE-------NNNDIAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKI 155
Query: 395 IVI 397
I++
Sbjct: 156 IIL 158
>pdb|3UP0|A Chain A, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Delta7-Dafachronic Acid
pdb|3UP0|B Chain B, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Delta7-Dafachronic Acid
pdb|3UP3|A Chain A, Nuclear Receptor Daf-12 From Hookworm Ancylostoma
Ceylanicum In Complex With (25s)-Cholestenoic Acid
Length = 243
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 14/67 (20%)
Query: 859 QEGKFALSKGWIIDSVTVLGL----GGSGKASTLEINGSPT-NANSKIEFNASEQKHLNS 913
Q+GKFAL KG +I+ +TV G+ SG +T PT +S++ N +Q LN+
Sbjct: 72 QDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTT------PTLGESSEVSINMFDQ--LNA 123
Query: 914 -VEDEQK 919
V EQK
Sbjct: 124 DVRSEQK 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,129,096
Number of Sequences: 62578
Number of extensions: 1439561
Number of successful extensions: 3156
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3046
Number of HSP's gapped (non-prelim): 35
length of query: 946
length of database: 14,973,337
effective HSP length: 108
effective length of query: 838
effective length of database: 8,214,913
effective search space: 6884097094
effective search space used: 6884097094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)