BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002257
(946 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 159/371 (42%), Gaps = 36/371 (9%)
Query: 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVY---GAL 57
+++ I+ + +P L+VQ+GE + +I +D+P++WP LL + L + + G L
Sbjct: 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVL 144
Query: 58 FVLRILSRKYE--FKSDE---ERTPVYRIVEETFHHLLNIFNRLV---QIVNPSLEVA-D 108
V + +++ F+SDE E V + F +LL + + + SL + D
Sbjct: 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD 204
Query: 109 LIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWW 168
++ ++ K+++ +IP + + N+ M +F L P +P + E
Sbjct: 205 VLLVLIKLYYDFNCQDIP-EFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASV--LI 260
Query: 169 KVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 228
KVK ++ TR+ D+ F M + ++ NLL I
Sbjct: 261 KVKSSIQELVQLYTTRYEDV---------FGPMI-----NEFIQITWNLLTSISNQPKY- 305
Query: 229 DRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYV 286
D + + L +L+ + + + ++ + +I+ P + + D +L+++DP EY+
Sbjct: 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYI 365
Query: 287 RKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQK 346
R+ + D + R A DF+ EL K F+ + G +Y P K ++ K
Sbjct: 366 RRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP--SKNWKFK 422
Query: 347 DGALLAIGALC 357
D + AL
Sbjct: 423 DLYIYLFTALA 433
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 159/371 (42%), Gaps = 36/371 (9%)
Query: 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVY---GAL 57
+++ I+ + +P L+VQ+GE + +I +D+P++WP LL + L + + G L
Sbjct: 85 LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVL 144
Query: 58 FVLRILSRKYE--FKSDE---ERTPVYRIVEETFHHLLNIFNRLV---QIVNPSLEVA-D 108
V + +++ F+SDE E V + F +LL + + + SL + D
Sbjct: 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD 204
Query: 109 LIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWW 168
++ ++ K+++ +IP + + N+ M +F L P +P + E
Sbjct: 205 VLLVLIKLYYDFNCQDIP-EFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASV--LI 260
Query: 169 KVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 228
KVK ++ TR+ D+ F M + ++ NLL I
Sbjct: 261 KVKSSIQELVQLYTTRYEDV---------FGPMI-----NEFIQITWNLLTSISNQPKY- 305
Query: 229 DRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYV 286
D + + L +L+ + + + ++ + +I+ P + + D +L+++DP EY+
Sbjct: 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYI 365
Query: 287 RKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQK 346
R+ + D + R A DF+ EL K F+ + G +Y P K ++ K
Sbjct: 366 RRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP--SKNWKFK 422
Query: 347 DGALLAIGALC 357
D + AL
Sbjct: 423 DLYIYLFTALA 433
>pdb|3U9M|A Chain A, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|C Chain C, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|E Chain E, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|G Chain G, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
Length = 160
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 379 FPE----FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSV 434
FPE F++P ++ + + NFS+ N+FR L S+ + ++ ++ ++++
Sbjct: 4 FPEEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENE 63
Query: 435 FALRSFVEACRDLNEIRP--ILPQLLDEFFKLMNEVENE 471
+ + + + + + L ++L F K + V+NE
Sbjct: 64 YIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNE 102
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 346 KDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-- 402
K+ +L +GA+ + Q PY EL + H+ S +R+ W +YAH
Sbjct: 389 KESGILVLGAIAEGCMQGMIPYLPEL----IPHLIQCLSDKKALVRSITCWTLSRYAHWV 444
Query: 403 INFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF-VEACRDLNEIRPILPQLLDEF 461
++ + + ++ + D V+ + A + EAC E+ P L +LD
Sbjct: 445 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC---TELVPYLAYILDTL 501
Query: 462 FKLMNEVENEDLVF---TLETIVDKFGEEM 488
++ ++++L+ + T+ D G +
Sbjct: 502 VFAFSKYQHKNLLILYDAIGTLADSVGHHL 531
>pdb|3V5X|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5X|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5Y|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|C Chain C, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|D Chain D, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Z|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
pdb|3V5Z|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
Length = 161
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 379 FPE----FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSV 434
FPE F++P ++ + + NFS+ N+FR L S+ + ++ ++ ++++
Sbjct: 4 FPEEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENE 63
Query: 435 FALRSFVEACRDLNEIRP--ILPQLLDEFFKLMNEVENE 471
+ + + + + + L ++L F K + V+NE
Sbjct: 64 YIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNE 102
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 346 KDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-- 402
K+ +L +GA+ + Q PY EL + H+ S +R+ W +YAH
Sbjct: 414 KESGILVLGAIAEGCMQGMIPYLPEL----IPHLIQCLSDKKALVRSITCWTLSRYAHWV 469
Query: 403 INFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF-VEACRDLNEIRPILPQLLDEF 461
++ + + ++ + D V+ + A + EAC E+ P L +LD
Sbjct: 470 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC---TELVPYLAYILDTL 526
Query: 462 FKLMNEVENEDLVF---TLETIVDKFGEEM 488
++ ++++L+ + T+ D G +
Sbjct: 527 VFAFSKYQHKNLLILYDAIGTLADSVGHHL 556
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 346 KDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-- 402
K+ +L +GA+ + Q PY EL + H+ S +R+ W +YAH
Sbjct: 376 KESGILVLGAIAEGCMQGMIPYLPEL----IPHLIQCLSDKKALVRSITCWTLSRYAHWV 431
Query: 403 INFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF-VEACRDLNEIRPILPQLLDEF 461
++ + + ++ + D V+ + A + EAC E+ P L +LD
Sbjct: 432 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC---TELVPYLAYILDTL 488
Query: 462 FKLMNEVENEDLVF---TLETIVDKFGEEM 488
++ ++++L+ + T+ D G +
Sbjct: 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHL 518
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 346 KDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN 404
K+ +L +GA+ + Q PY EL + H+ S +R+ W +YAH
Sbjct: 414 KESGILVLGAIAEGCXQGXIPYLPEL----IPHLIQCLSDKKALVRSITCWTLSRYAHWV 469
Query: 405 FSD-QNNFRKALHS-VVSGLRDPELPVRVDSVFALRSF-VEACRDLNEIRPILPQLLDEF 461
S + + K L + ++ + D V+ + A + EAC E+ P L +LD
Sbjct: 470 VSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAFATLEEEAC---TELVPYLAYILDTL 526
Query: 462 FKLMNEVENEDLVF---TLETIVDKFGEEM 488
++ ++++L+ + T+ D G +
Sbjct: 527 VFAFSKYQHKNLLILYDAIGTLADSVGHHL 556
>pdb|1U2Z|A Chain A, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
pdb|1U2Z|B Chain B, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
pdb|1U2Z|C Chain C, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
Length = 433
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 93 FNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNV 134
F R I NP E+ LI+ C +F S Y E K+ + P++
Sbjct: 106 FKRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,597,981
Number of Sequences: 62578
Number of extensions: 1033283
Number of successful extensions: 2263
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2256
Number of HSP's gapped (non-prelim): 19
length of query: 946
length of database: 14,973,337
effective HSP length: 108
effective length of query: 838
effective length of database: 8,214,913
effective search space: 6884097094
effective search space used: 6884097094
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)