Query 002257
Match_columns 946
No_of_seqs 234 out of 1268
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 20:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 1E-150 3E-155 1266.3 86.8 910 2-933 90-1009(1010)
2 COG5656 SXM1 Importin, protein 100.0 2E-110 3E-115 908.0 71.4 867 3-923 90-969 (970)
3 KOG1992 Nuclear export recepto 100.0 8.8E-94 1.9E-98 787.7 64.6 824 1-924 88-959 (960)
4 KOG1993 Nuclear transport rece 100.0 7.9E-67 1.7E-71 571.9 61.3 824 1-923 81-976 (978)
5 KOG2274 Predicted importin 9 [ 100.0 3E-62 6.4E-67 544.5 60.5 830 1-922 90-1004(1005)
6 PF08506 Cse1: Cse1; InterPro 100.0 1E-50 2.3E-55 442.3 26.8 349 63-437 1-370 (370)
7 COG5657 CSE1 CAS/CSE protein i 100.0 2.5E-47 5.5E-52 427.5 53.6 817 1-921 85-943 (947)
8 KOG2023 Nuclear transport rece 100.0 6.9E-46 1.5E-50 400.0 40.7 673 1-774 90-824 (885)
9 PF03378 CAS_CSE1: CAS/CSE pro 100.0 1.7E-43 3.8E-48 393.2 30.4 407 446-921 16-435 (435)
10 KOG2171 Karyopherin (importin) 100.0 1.4E-35 3E-40 343.1 54.0 596 2-691 80-694 (1075)
11 KOG1241 Karyopherin (importin) 100.0 8.9E-29 1.9E-33 272.9 45.0 590 1-685 90-728 (859)
12 COG5215 KAP95 Karyopherin (imp 100.0 1.8E-24 4E-29 230.8 47.9 601 1-686 94-729 (858)
13 KOG2171 Karyopherin (importin) 99.8 4.6E-12 1E-16 148.9 66.8 702 5-790 122-1023(1075)
14 KOG2023 Nuclear transport rece 99.6 3.3E-11 7.2E-16 132.6 41.6 608 6-718 133-825 (885)
15 KOG2022 Nuclear transport rece 99.5 1.9E-08 4.1E-13 115.2 56.5 565 3-598 85-753 (982)
16 KOG1991 Nuclear transport rece 99.5 1.1E-07 2.3E-12 110.7 57.8 314 4-382 4-357 (1010)
17 KOG1241 Karyopherin (importin) 99.1 3.5E-06 7.5E-11 95.6 40.2 451 229-721 231-722 (859)
18 COG5101 CRM1 Importin beta-rel 99.0 1.9E-05 4.1E-10 87.5 44.4 191 264-467 426-630 (1053)
19 KOG1824 TATA-binding protein-i 99.0 0.00017 3.6E-09 83.9 49.9 545 5-696 9-627 (1233)
20 KOG1824 TATA-binding protein-i 99.0 0.0002 4.3E-09 83.3 49.6 484 11-581 184-723 (1233)
21 KOG2021 Nuclear mRNA export fa 98.8 8.6E-05 1.9E-09 84.3 40.0 194 254-466 378-586 (980)
22 COG5215 KAP95 Karyopherin (imp 98.8 0.00071 1.5E-08 74.8 44.0 455 229-721 235-722 (858)
23 PF08389 Xpo1: Exportin 1-like 98.7 9.9E-08 2.1E-12 92.4 10.7 130 14-148 1-137 (148)
24 KOG2081 Nuclear transport regu 98.6 3.6E-05 7.7E-10 85.4 30.0 224 230-485 306-539 (559)
25 KOG0213 Splicing factor 3b, su 98.3 0.014 3.1E-07 66.7 38.3 270 252-582 793-1067(1172)
26 KOG0213 Splicing factor 3b, su 98.2 0.018 3.8E-07 66.0 37.8 246 419-691 722-971 (1172)
27 KOG1020 Sister chromatid cohes 98.0 0.0095 2.1E-07 73.5 33.4 315 300-646 794-1170(1692)
28 KOG0915 Uncharacterized conser 98.0 0.029 6.2E-07 69.5 35.2 333 342-722 970-1319(1702)
29 KOG2274 Predicted importin 9 [ 97.9 0.1 2.3E-06 61.6 52.2 214 348-582 469-691 (1005)
30 KOG1992 Nuclear export recepto 97.9 0.1 2.2E-06 61.1 46.0 262 296-581 419-710 (960)
31 PF01602 Adaptin_N: Adaptin N 97.9 0.019 4.2E-07 68.2 32.8 429 7-578 85-522 (526)
32 KOG1248 Uncharacterized conser 97.9 0.015 3.3E-07 70.4 30.6 199 297-499 711-916 (1176)
33 PF01602 Adaptin_N: Adaptin N 97.7 0.013 2.8E-07 69.8 28.4 111 342-467 92-203 (526)
34 KOG1242 Protein containing ada 97.7 0.026 5.7E-07 64.2 27.6 344 297-684 110-461 (569)
35 KOG0212 Uncharacterized conser 97.7 0.056 1.2E-06 60.5 29.0 214 409-647 80-301 (675)
36 PLN03200 cellulose synthase-in 97.7 0.52 1.1E-05 62.5 42.4 251 343-622 418-682 (2102)
37 KOG0212 Uncharacterized conser 97.6 0.026 5.7E-07 63.0 25.2 384 296-709 13-405 (675)
38 PF10508 Proteasom_PSMB: Prote 97.6 0.019 4.2E-07 67.1 26.3 328 378-738 43-388 (503)
39 PTZ00429 beta-adaptin; Provisi 97.5 0.26 5.6E-06 59.8 34.6 157 300-483 50-206 (746)
40 PF10508 Proteasom_PSMB: Prote 97.5 0.019 4.2E-07 67.1 24.6 203 374-600 78-295 (503)
41 KOG1943 Beta-tubulin folding c 97.5 0.51 1.1E-05 57.2 43.3 342 3-443 343-706 (1133)
42 PTZ00429 beta-adaptin; Provisi 97.4 0.073 1.6E-06 64.4 28.4 124 342-480 118-243 (746)
43 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.00072 1.6E-08 59.2 6.3 80 390-471 3-83 (97)
44 KOG1059 Vesicle coat complex A 97.2 0.14 3.1E-06 59.0 25.4 121 374-508 145-266 (877)
45 KOG1242 Protein containing ada 97.1 0.8 1.7E-05 52.6 34.8 391 312-768 46-445 (569)
46 PLN03200 cellulose synthase-in 97.1 2.2 4.8E-05 56.9 44.7 372 300-738 547-933 (2102)
47 KOG1060 Vesicle coat complex A 97.0 0.22 4.7E-06 58.1 24.5 109 342-468 121-229 (968)
48 KOG1062 Vesicle coat complex A 97.0 0.6 1.3E-05 54.9 28.0 45 22-66 125-172 (866)
49 KOG0166 Karyopherin (importin) 97.0 0.0067 1.5E-07 68.4 12.4 260 342-621 123-394 (514)
50 KOG2020 Nuclear transport rece 97.0 1.8 4E-05 53.9 34.3 54 14-67 109-164 (1041)
51 KOG1061 Vesicle coat complex A 96.9 0.15 3.3E-06 59.5 22.1 149 341-501 98-246 (734)
52 KOG0166 Karyopherin (importin) 96.8 0.0097 2.1E-07 67.1 11.7 253 298-579 125-392 (514)
53 COG5096 Vesicle coat complex, 96.8 2 4.4E-05 51.5 31.9 143 342-500 68-210 (757)
54 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0019 4.1E-08 50.3 4.1 54 387-440 1-55 (55)
55 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.007 1.5E-07 53.1 7.6 92 345-441 2-95 (97)
56 PF12719 Cnd3: Nuclear condens 96.6 0.11 2.4E-06 56.4 18.3 176 369-562 23-208 (298)
57 PF12717 Cnd1: non-SMC mitotic 96.6 0.028 6E-07 56.0 12.1 150 344-505 3-157 (178)
58 PF05918 API5: Apoptosis inhib 96.5 1.3 2.8E-05 51.3 26.5 297 385-717 34-352 (556)
59 PF12460 MMS19_C: RNAPII trans 96.3 1.3 2.8E-05 50.7 25.6 208 342-598 203-413 (415)
60 PF03378 CAS_CSE1: CAS/CSE pro 96.3 0.29 6.2E-06 55.8 19.7 184 485-691 17-212 (435)
61 PF08167 RIX1: rRNA processing 96.3 0.048 1E-06 53.4 11.6 129 369-500 22-161 (165)
62 COG5181 HSH155 U2 snRNP splice 96.1 0.61 1.3E-05 52.9 19.8 299 413-738 521-829 (975)
63 COG5181 HSH155 U2 snRNP splice 96.0 4 8.7E-05 46.7 37.7 308 373-722 604-925 (975)
64 KOG1240 Protein kinase contain 96.0 0.15 3.3E-06 62.0 15.7 237 298-582 438-687 (1431)
65 cd00020 ARM Armadillo/beta-cat 96.0 0.0089 1.9E-07 54.9 4.7 98 342-441 20-119 (120)
66 KOG0915 Uncharacterized conser 95.9 7.6 0.00016 49.4 38.7 131 341-474 1051-1190(1702)
67 KOG1062 Vesicle coat complex A 95.9 5.6 0.00012 47.2 30.6 90 342-443 83-172 (866)
68 KOG0946 ER-Golgi vesicle-tethe 95.8 5.6 0.00012 47.1 32.2 159 298-468 38-220 (970)
69 KOG1058 Vesicle coat complex C 95.6 1.7 3.6E-05 50.9 21.1 190 280-508 109-327 (948)
70 PF14500 MMS19_N: Dos2-interac 95.5 0.69 1.5E-05 48.9 16.9 237 378-644 4-257 (262)
71 KOG1240 Protein kinase contain 95.3 0.65 1.4E-05 56.9 17.6 275 387-683 437-745 (1431)
72 KOG1058 Vesicle coat complex C 95.2 8.7 0.00019 45.3 26.4 81 375-463 101-181 (948)
73 COG5240 SEC21 Vesicle coat com 95.1 7.5 0.00016 44.2 23.6 293 343-666 238-553 (898)
74 KOG1248 Uncharacterized conser 95.1 13 0.00028 46.3 46.0 299 297-621 585-899 (1176)
75 PF12348 CLASP_N: CLASP N term 94.9 0.55 1.2E-05 48.8 14.2 167 295-472 19-193 (228)
76 PF13513 HEAT_EZ: HEAT-like re 94.9 0.026 5.6E-07 43.8 3.1 55 343-400 1-55 (55)
77 PF04931 DNA_pol_phi: DNA poly 94.8 4.6 9.9E-05 50.3 23.9 22 908-929 727-748 (784)
78 KOG2021 Nuclear mRNA export fa 94.7 4.5 9.7E-05 47.5 21.3 78 429-508 713-790 (980)
79 PF12348 CLASP_N: CLASP N term 94.5 0.44 9.5E-06 49.6 12.3 149 411-579 51-205 (228)
80 PF12460 MMS19_C: RNAPII trans 94.5 12 0.00025 42.9 32.1 371 16-464 17-414 (415)
81 COG5096 Vesicle coat complex, 94.3 11 0.00023 45.6 23.9 105 342-463 105-211 (757)
82 PRK09687 putative lyase; Provi 94.3 0.15 3.2E-06 54.8 8.1 115 297-440 105-219 (280)
83 COG5064 SRP1 Karyopherin (impo 94.2 0.45 9.7E-06 50.1 11.0 98 342-444 170-274 (526)
84 KOG1943 Beta-tubulin folding c 94.2 19 0.00041 44.4 47.8 137 297-443 355-501 (1133)
85 KOG1993 Nuclear transport rece 94.2 16 0.00035 43.5 45.5 330 377-738 530-886 (978)
86 PF04826 Arm_2: Armadillo-like 93.8 1.1 2.3E-05 47.2 13.3 182 381-581 20-206 (254)
87 KOG1020 Sister chromatid cohes 93.7 28 0.00061 44.7 43.2 154 342-508 790-960 (1692)
88 KOG0414 Chromosome condensatio 93.7 25 0.00053 44.0 33.7 161 298-467 290-454 (1251)
89 PF13646 HEAT_2: HEAT repeats; 93.6 0.27 5.8E-06 42.3 7.2 75 342-438 13-88 (88)
90 PF02985 HEAT: HEAT repeat; I 93.6 0.072 1.6E-06 35.7 2.7 30 414-443 1-30 (31)
91 PF12717 Cnd1: non-SMC mitotic 93.4 3.1 6.8E-05 41.3 15.5 74 386-467 1-74 (178)
92 PRK09687 putative lyase; Provi 93.4 1.7 3.7E-05 46.6 14.3 116 342-480 36-152 (280)
93 PF14500 MMS19_N: Dos2-interac 93.2 6.4 0.00014 41.7 18.0 234 342-596 12-255 (262)
94 PF08167 RIX1: rRNA processing 93.1 2.9 6.3E-05 40.9 14.3 86 126-244 58-143 (165)
95 PF05004 IFRD: Interferon-rela 93.0 12 0.00026 40.7 20.3 181 230-444 58-259 (309)
96 cd00020 ARM Armadillo/beta-cat 92.9 0.078 1.7E-06 48.5 2.9 87 379-469 13-104 (120)
97 KOG0211 Protein phosphatase 2A 92.9 18 0.00039 44.1 22.9 134 296-443 531-665 (759)
98 PF10521 DUF2454: Protein of u 92.5 12 0.00027 40.1 19.5 103 342-445 15-151 (282)
99 PF13646 HEAT_2: HEAT repeats; 92.5 0.17 3.6E-06 43.5 4.3 68 383-471 10-77 (88)
100 KOG0168 Putative ubiquitin fus 92.4 31 0.00066 41.6 27.6 54 411-464 209-266 (1051)
101 PF08767 CRM1_C: CRM1 C termin 92.4 20 0.00043 39.3 22.8 122 452-582 67-196 (319)
102 KOG2022 Nuclear transport rece 91.9 36 0.00078 41.2 25.3 194 473-691 444-643 (982)
103 KOG1061 Vesicle coat complex A 90.1 49 0.0011 39.6 27.1 124 342-481 62-185 (734)
104 KOG4653 Uncharacterized conser 89.8 16 0.00035 43.9 17.7 172 411-604 725-901 (982)
105 PF05804 KAP: Kinesin-associat 89.5 27 0.00059 42.4 20.0 349 346-731 266-627 (708)
106 KOG0946 ER-Golgi vesicle-tethe 89.5 46 0.001 39.9 20.7 200 409-622 18-243 (970)
107 PF10363 DUF2435: Protein of u 89.3 1.5 3.2E-05 38.1 7.0 72 413-487 3-77 (92)
108 COG5098 Chromosome condensatio 88.9 50 0.0011 38.9 20.1 133 301-443 280-416 (1128)
109 KOG1832 HIV-1 Vpr-binding prot 88.6 0.37 8.1E-06 56.7 3.5 15 298-312 677-691 (1516)
110 KOG1060 Vesicle coat complex A 88.4 65 0.0014 38.7 28.0 126 297-444 49-174 (968)
111 PF10521 DUF2454: Protein of u 86.9 14 0.0003 39.8 14.2 159 341-500 87-271 (282)
112 KOG2160 Armadillo/beta-catenin 86.7 21 0.00045 38.8 15.0 101 342-445 96-199 (342)
113 COG5656 SXM1 Importin, protein 86.7 78 0.0017 37.8 49.9 159 519-687 428-587 (970)
114 KOG4653 Uncharacterized conser 86.3 17 0.00036 43.8 15.0 142 300-454 785-928 (982)
115 PF10274 ParcG: Parkin co-regu 86.3 2.4 5.2E-05 41.7 7.1 89 411-500 36-130 (183)
116 KOG1077 Vesicle coat complex A 85.8 83 0.0018 37.3 34.1 107 384-499 321-450 (938)
117 PRK13800 putative oxidoreducta 85.2 4 8.7E-05 51.7 10.5 78 342-440 788-865 (897)
118 PF04931 DNA_pol_phi: DNA poly 85.1 0.98 2.1E-05 56.1 4.9 30 37-66 1-33 (784)
119 PRK13800 putative oxidoreducta 84.5 39 0.00085 43.0 18.7 76 342-439 665-740 (897)
120 PF01603 B56: Protein phosphat 84.2 12 0.00026 42.6 12.7 97 526-624 274-374 (409)
121 KOG2956 CLIP-associating prote 84.1 45 0.00099 37.5 16.2 209 273-498 272-494 (516)
122 KOG4224 Armadillo repeat prote 84.0 7.4 0.00016 41.8 9.8 66 378-444 213-282 (550)
123 PF08767 CRM1_C: CRM1 C termin 84.0 9.4 0.0002 41.8 11.4 160 526-691 46-225 (319)
124 KOG2025 Chromosome condensatio 83.8 1E+02 0.0022 36.7 24.0 75 370-444 82-157 (892)
125 PF05536 Neurochondrin: Neuroc 83.2 1.1E+02 0.0023 36.4 20.8 153 552-709 99-260 (543)
126 KOG1832 HIV-1 Vpr-binding prot 83.1 0.74 1.6E-05 54.3 2.4 11 206-216 582-592 (1516)
127 PF12231 Rif1_N: Rap1-interact 82.8 88 0.0019 35.1 24.7 243 319-582 37-305 (372)
128 PF10363 DUF2435: Protein of u 82.1 4 8.6E-05 35.4 6.0 67 378-444 8-74 (92)
129 PF05004 IFRD: Interferon-rela 81.9 84 0.0018 34.3 21.5 183 410-601 40-238 (309)
130 PF03224 V-ATPase_H_N: V-ATPas 80.2 44 0.00095 36.5 15.0 109 6-123 110-228 (312)
131 PF11865 DUF3385: Domain of un 80.0 16 0.00035 35.4 10.2 127 320-470 9-142 (160)
132 PF04510 DUF577: Family of unk 79.7 63 0.0014 31.4 14.5 83 2-91 4-91 (174)
133 KOG2759 Vacuolar H+-ATPase V1 79.5 1.1E+02 0.0024 34.1 24.1 121 301-445 65-189 (442)
134 cd08050 TAF6 TATA Binding Prot 78.9 12 0.00026 41.4 10.1 127 205-358 210-340 (343)
135 KOG1059 Vesicle coat complex A 78.4 1.6E+02 0.0034 35.3 29.6 277 374-707 110-398 (877)
136 PF04826 Arm_2: Armadillo-like 77.8 16 0.00036 38.4 10.1 127 342-477 67-197 (254)
137 PF10274 ParcG: Parkin co-regu 77.5 24 0.00052 34.8 10.4 92 450-558 36-131 (183)
138 KOG2933 Uncharacterized conser 77.3 16 0.00035 38.7 9.6 136 296-444 101-236 (334)
139 PF01603 B56: Protein phosphat 77.2 44 0.00096 38.1 14.2 159 300-468 150-309 (409)
140 COG5064 SRP1 Karyopherin (impo 76.7 7.4 0.00016 41.4 6.9 126 348-479 134-266 (526)
141 PF03224 V-ATPase_H_N: V-ATPas 76.6 86 0.0019 34.2 15.9 83 381-465 113-200 (312)
142 KOG4524 Uncharacterized conser 76.3 2.1E+02 0.0045 35.6 21.7 102 394-497 569-677 (1014)
143 KOG1525 Sister chromatid cohes 76.0 2.6E+02 0.0056 36.6 22.7 60 655-715 275-334 (1266)
144 KOG0414 Chromosome condensatio 75.6 32 0.0007 43.0 12.8 136 304-457 898-1040(1251)
145 PF00514 Arm: Armadillo/beta-c 74.4 3.8 8.3E-05 29.3 3.1 28 414-441 13-40 (41)
146 PF02985 HEAT: HEAT repeat; I 74.0 6.6 0.00014 26.1 4.0 28 4-31 3-30 (31)
147 KOG1967 DNA repair/transcripti 73.4 54 0.0012 40.1 13.5 140 548-692 864-1007(1030)
148 KOG2549 Transcription initiati 72.6 33 0.00071 39.4 11.1 107 229-359 261-371 (576)
149 PF07571 DUF1546: Protein of u 72.2 7.9 0.00017 33.6 5.1 62 295-359 18-79 (92)
150 KOG0211 Protein phosphatase 2A 70.6 2.7E+02 0.0058 34.3 27.0 391 275-720 271-677 (759)
151 PF08161 NUC173: NUC173 domain 70.1 48 0.001 33.4 10.8 137 471-621 18-182 (198)
152 PF08064 UME: UME (NUC010) dom 69.9 21 0.00044 32.1 7.4 74 425-500 27-102 (107)
153 COG5116 RPN2 26S proteasome re 69.7 13 0.00029 42.3 7.2 83 383-472 596-678 (926)
154 smart00802 UME Domain in UVSB 69.6 25 0.00054 31.5 7.7 95 634-733 8-105 (107)
155 smart00802 UME Domain in UVSB 69.4 25 0.00055 31.4 7.7 85 411-497 9-99 (107)
156 KOG2956 CLIP-associating prote 68.9 1.9E+02 0.004 32.9 15.5 151 409-579 325-476 (516)
157 COG5218 YCG1 Chromosome conden 66.8 87 0.0019 36.3 12.7 96 347-444 65-163 (885)
158 PF13251 DUF4042: Domain of un 66.6 1.4E+02 0.003 29.7 13.0 125 418-581 44-175 (182)
159 PF08506 Cse1: Cse1; InterPro 66.6 2.2E+02 0.0048 31.9 24.1 146 296-463 109-259 (370)
160 PF08389 Xpo1: Exportin 1-like 66.5 41 0.00088 31.7 9.4 124 301-437 6-148 (148)
161 KOG2051 Nonsense-mediated mRNA 66.5 3.5E+02 0.0075 34.1 24.1 12 409-420 458-469 (1128)
162 cd00256 VATPase_H VATPase_H, r 66.2 2.4E+02 0.0053 32.2 21.8 103 7-123 107-217 (429)
163 KOG0168 Putative ubiquitin fus 66.2 3.2E+02 0.0069 33.5 19.1 164 549-721 209-378 (1051)
164 KOG2160 Armadillo/beta-catenin 65.8 50 0.0011 36.0 10.4 114 643-771 87-200 (342)
165 KOG0392 SNF2 family DNA-depend 65.6 36 0.00077 42.9 10.2 171 300-484 750-927 (1549)
166 PF04118 Dopey_N: Dopey, N-ter 65.5 2.1E+02 0.0045 31.1 16.3 166 14-242 2-199 (307)
167 PF12074 DUF3554: Domain of un 65.2 1.3E+02 0.0028 33.3 14.3 173 6-220 66-255 (339)
168 PF08064 UME: UME (NUC010) dom 64.1 48 0.001 29.7 8.6 94 635-733 9-105 (107)
169 KOG1967 DNA repair/transcripti 64.1 28 0.0006 42.4 8.7 91 409-501 905-1002(1030)
170 KOG4535 HEAT and armadillo rep 64.1 23 0.00051 39.6 7.6 122 342-467 497-624 (728)
171 KOG2062 26S proteasome regulat 63.2 32 0.00069 40.8 8.8 113 342-471 568-680 (929)
172 KOG0943 Predicted ubiquitin-pr 62.2 7 0.00015 47.9 3.5 13 633-645 1530-1542(3015)
173 PF12054 DUF3535: Domain of un 61.7 2.5E+02 0.0054 32.4 15.9 81 342-427 100-182 (441)
174 PF05536 Neurochondrin: Neuroc 61.4 3.4E+02 0.0074 32.2 26.4 144 524-672 116-265 (543)
175 KOG1078 Vesicle coat complex C 61.1 51 0.0011 39.5 10.0 175 294-494 403-577 (865)
176 PF04821 TIMELESS: Timeless pr 56.4 2.7E+02 0.0059 29.6 16.1 161 548-717 42-216 (266)
177 KOG1077 Vesicle coat complex A 56.1 4.3E+02 0.0094 31.8 32.5 113 297-450 383-496 (938)
178 KOG2032 Uncharacterized conser 55.1 3.8E+02 0.0082 30.8 16.5 91 409-501 254-349 (533)
179 PF11865 DUF3385: Domain of un 55.0 92 0.002 30.2 9.5 54 523-579 103-156 (160)
180 PF05804 KAP: Kinesin-associat 55.0 4.8E+02 0.01 32.0 31.9 240 299-579 306-563 (708)
181 PF14225 MOR2-PAG1_C: Cell mor 54.7 2.9E+02 0.0062 29.3 15.1 144 411-582 109-256 (262)
182 KOG0889 Histone acetyltransfer 53.9 9.4E+02 0.02 35.0 21.8 89 397-485 31-126 (3550)
183 PF04388 Hamartin: Hamartin pr 53.3 3.2E+02 0.007 33.4 15.6 150 415-599 6-156 (668)
184 COG5240 SEC21 Vesicle coat com 52.8 4.4E+02 0.0095 30.9 23.7 79 406-488 257-338 (898)
185 PF12231 Rif1_N: Rap1-interact 51.2 4E+02 0.0086 29.9 25.1 85 343-427 8-104 (372)
186 PF08569 Mo25: Mo25-like; Int 48.0 46 0.00099 36.6 6.8 83 369-452 206-293 (335)
187 PF13925 Katanin_con80: con80 47.9 35 0.00077 33.3 5.3 50 19-68 44-101 (164)
188 smart00185 ARM Armadillo/beta- 47.5 15 0.00032 25.7 2.1 28 414-441 13-40 (41)
189 KOG1517 Guanine nucleotide bin 46.6 5.3E+02 0.012 32.6 15.3 179 252-443 528-733 (1387)
190 PF04388 Hamartin: Hamartin pr 45.1 35 0.00076 41.5 5.8 77 387-467 82-163 (668)
191 PF10350 DUF2428: Putative dea 44.3 3.4E+02 0.0073 28.6 12.5 119 346-465 114-249 (255)
192 PF13251 DUF4042: Domain of un 44.0 2.5E+02 0.0054 27.9 10.5 143 299-444 2-176 (182)
193 PF13817 DDE_Tnp_IS66_C: IS66 43.0 26 0.00057 24.9 2.6 29 879-907 8-36 (39)
194 KOG2213 Apoptosis inhibitor 5/ 42.8 5.2E+02 0.011 28.8 23.1 52 389-443 40-91 (460)
195 TIGR02270 conserved hypothetic 42.8 97 0.0021 35.2 8.5 76 342-440 130-205 (410)
196 PLN03076 ARF guanine nucleotid 42.7 1.1E+03 0.024 32.5 24.8 261 414-685 1183-1507(1780)
197 PF08569 Mo25: Mo25-like; Int 42.1 5.1E+02 0.011 28.6 19.7 222 12-288 87-328 (335)
198 KOG0413 Uncharacterized conser 41.7 8.1E+02 0.018 30.8 18.1 94 299-407 947-1043(1529)
199 KOG2256 Predicted protein invo 41.4 6.1E+02 0.013 30.3 14.4 54 409-463 278-331 (661)
200 PF07571 DUF1546: Protein of u 41.1 74 0.0016 27.6 5.7 50 15-65 20-78 (92)
201 KOG3961 Uncharacterized conser 41.1 3.4E+02 0.0073 27.5 10.6 93 450-559 112-207 (262)
202 KOG3961 Uncharacterized conser 40.7 93 0.002 31.3 6.8 86 412-499 113-204 (262)
203 KOG1820 Microtubule-associated 40.7 5.6E+02 0.012 31.9 14.9 169 409-601 249-424 (815)
204 PF06524 NOA36: NOA36 protein; 39.1 18 0.0004 36.9 1.8 6 616-621 104-109 (314)
205 KOG2259 Uncharacterized conser 39.0 7.6E+02 0.016 29.6 23.1 94 342-443 211-311 (823)
206 KOG4224 Armadillo repeat prote 38.5 66 0.0014 34.9 5.8 102 342-444 221-323 (550)
207 KOG2038 CAATT-binding transcri 38.2 8.3E+02 0.018 29.9 17.5 72 384-461 315-386 (988)
208 KOG2137 Protein kinase [Signal 37.9 5.8E+02 0.013 30.8 13.8 88 525-619 368-457 (700)
209 KOG0392 SNF2 family DNA-depend 37.5 1.1E+03 0.023 30.9 16.9 122 342-468 90-220 (1549)
210 KOG2085 Serine/threonine prote 36.6 1.4E+02 0.0029 33.3 7.9 93 527-624 319-418 (457)
211 KOG2032 Uncharacterized conser 36.2 7.3E+02 0.016 28.6 18.0 88 379-469 264-355 (533)
212 smart00638 LPD_N Lipoprotein N 36.2 2E+02 0.0044 34.4 10.6 93 342-443 410-510 (574)
213 PF10487 Nup188: Nucleoporin s 35.9 7.8E+02 0.017 31.5 15.7 117 633-768 545-669 (931)
214 COG5657 CSE1 CAS/CSE protein i 35.3 9.8E+02 0.021 29.9 30.1 57 409-467 529-586 (947)
215 cd08050 TAF6 TATA Binding Prot 35.2 5.2E+02 0.011 28.6 12.7 57 526-582 232-299 (343)
216 PF11698 V-ATPase_H_C: V-ATPas 35.1 33 0.00071 31.3 2.6 58 384-443 55-116 (119)
217 smart00638 LPD_N Lipoprotein N 34.6 1.4E+02 0.003 35.8 8.8 100 319-438 440-541 (574)
218 KOG1048 Neural adherens juncti 34.6 2.8E+02 0.006 33.6 10.7 99 382-484 242-347 (717)
219 PF08713 DNA_alkylation: DNA a 34.2 1.6E+02 0.0035 29.8 8.1 128 299-455 67-195 (213)
220 PF05918 API5: Apoptosis inhib 33.8 8.7E+02 0.019 28.8 24.1 266 410-711 20-298 (556)
221 KOG2137 Protein kinase [Signal 32.8 5.1E+02 0.011 31.3 12.2 113 309-440 376-494 (700)
222 PF14225 MOR2-PAG1_C: Cell mor 32.7 6.2E+02 0.013 26.8 14.8 69 551-622 188-256 (262)
223 KOG2025 Chromosome condensatio 32.4 4.8E+02 0.01 31.5 11.7 90 342-437 98-188 (892)
224 PF11841 DUF3361: Domain of un 31.4 4.9E+02 0.011 25.2 11.5 43 540-582 90-133 (160)
225 COG5116 RPN2 26S proteasome re 31.0 4.6E+02 0.0099 30.7 11.0 107 382-500 561-668 (926)
226 KOG3036 Protein involved in ce 30.3 3.4E+02 0.0073 28.3 8.9 96 230-356 94-195 (293)
227 PF00514 Arm: Armadillo/beta-c 28.5 83 0.0018 22.2 3.4 26 5-30 16-41 (41)
228 KOG2011 Sister chromatid cohes 28.3 1.4E+03 0.03 29.4 20.7 95 369-465 283-378 (1048)
229 KOG1517 Guanine nucleotide bin 27.5 2.6E+02 0.0055 35.2 8.8 96 343-444 571-673 (1387)
230 KOG0889 Histone acetyltransfer 27.5 2.2E+03 0.049 31.7 41.3 250 342-599 1046-1327(3550)
231 KOG2062 26S proteasome regulat 27.3 1.2E+03 0.026 28.4 19.3 114 344-479 394-507 (929)
232 PRK02922 glycogen synthesis pr 27.0 3.1E+02 0.0068 22.0 6.3 53 879-931 6-59 (67)
233 PF12719 Cnd3: Nuclear condens 26.6 8.3E+02 0.018 26.3 18.2 88 559-649 35-126 (298)
234 PF08623 TIP120: TATA-binding 25.8 4.2E+02 0.0091 26.0 8.6 100 658-767 46-146 (169)
235 PTZ00415 transmission-blocking 25.8 37 0.0008 44.0 1.7 10 877-886 201-210 (2849)
236 KOG1820 Microtubule-associated 25.7 1.1E+03 0.024 29.5 14.0 138 342-487 308-448 (815)
237 smart00288 VHS Domain present 25.6 5.5E+02 0.012 23.9 9.3 38 408-445 32-69 (133)
238 KOG2213 Apoptosis inhibitor 5/ 25.5 4.8E+02 0.01 29.1 9.6 34 385-423 73-106 (460)
239 PF12333 Ipi1_N: Rix1 complex 25.3 1.9E+02 0.0041 25.6 5.8 58 544-601 4-63 (102)
240 PF12783 Sec7_N: Guanine nucle 25.3 6.3E+02 0.014 24.4 10.9 63 657-720 91-155 (168)
241 PF05327 RRN3: RNA polymerase 25.2 1.2E+03 0.026 27.8 21.5 67 369-444 311-379 (563)
242 cd07064 AlkD_like_1 A new stru 25.1 2E+02 0.0044 29.2 6.8 127 299-454 62-189 (208)
243 PF14911 MMS22L_C: S-phase gen 24.0 4.1E+02 0.0088 29.7 9.1 60 385-445 224-290 (373)
244 PF04147 Nop14: Nop14-like fam 23.8 1.6E+02 0.0035 37.0 6.8 101 808-924 344-472 (840)
245 KOG0943 Predicted ubiquitin-pr 23.8 58 0.0013 40.6 2.8 16 32-47 758-773 (3015)
246 cd03572 ENTH_epsin_related ENT 23.2 2.2E+02 0.0048 26.2 5.8 45 400-444 25-69 (122)
247 PF03130 HEAT_PBS: PBS lyase H 23.1 48 0.001 21.2 1.1 14 389-402 1-14 (27)
248 PF01347 Vitellogenin_N: Lipop 23.0 1.4E+02 0.003 36.3 6.0 81 342-438 503-585 (618)
249 PF01347 Vitellogenin_N: Lipop 22.6 1.1E+02 0.0025 36.9 5.2 93 342-443 448-554 (618)
250 PF10193 Telomere_reg-2: Telom 22.4 2.1E+02 0.0046 25.9 5.6 79 415-493 5-90 (114)
251 PF13324 GCIP: Grap2 and cycli 22.3 2.1E+02 0.0045 30.6 6.5 22 780-801 123-144 (275)
252 KOG2149 Uncharacterized conser 21.7 5E+02 0.011 29.0 9.1 122 377-499 62-187 (393)
253 PF14664 RICTOR_N: Rapamycin-i 21.4 1.2E+03 0.025 26.2 12.9 118 411-545 23-143 (371)
254 PF01465 GRIP: GRIP domain; I 21.2 1.3E+02 0.0028 22.3 3.2 31 2-32 8-38 (46)
255 PF05327 RRN3: RNA polymerase 21.2 7.7E+02 0.017 29.5 11.6 16 778-793 199-214 (563)
256 KOG3540 Beta amyloid precursor 20.6 3.7E+02 0.008 30.5 7.7 26 882-907 245-270 (615)
257 PF11264 ThylakoidFormat: Thyl 20.5 9.3E+02 0.02 24.7 13.5 53 710-771 99-152 (216)
258 PF08161 NUC173: NUC173 domain 20.2 2E+02 0.0044 29.0 5.5 79 640-721 3-82 (198)
259 TIGR02270 conserved hypothetic 20.0 1E+02 0.0023 35.0 3.8 76 344-442 101-176 (410)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-150 Score=1266.34 Aligned_cols=910 Identities=46% Similarity=0.795 Sum_probs=831.9
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcchH
Q 002257 2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPV 78 (946)
Q Consensus 2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~l 78 (946)
||++|+.++.++|..||.|+.+++..|.++|||++||++++.+..+|+|+ .++|||.||++++|.||||.++.|.++
T Consensus 90 irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l 169 (1010)
T KOG1991|consen 90 IRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPL 169 (1010)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccH
Confidence 89999999999999999999999999999999999999999999999998 689999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCC
Q 002257 79 YRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPAD 158 (946)
Q Consensus 79 ~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d 158 (946)
..++..+||.+++++.++++.. +.++.++.++|+|||++++++++|..+.+.+.+..||++|++++++|+|.+.++.|
T Consensus 170 ~~~v~~~fP~il~~~~~ll~~~--s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d 247 (1010)
T KOG1991|consen 170 GEAVEELFPDILQIFNGLLSQE--SYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLD 247 (1010)
T ss_pred HHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCC
Confidence 9999999999999999998764 46788999999999999999999999998899999999999999999998888889
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 002257 159 PEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQY 238 (946)
Q Consensus 159 ~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~f 238 (946)
+++|..|||||||||++++|+|+|+|||+|+++.++|+.|+++|..+|++.+++.+++++..++.+.|++++++.+++.|
T Consensus 248 ~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~f 327 (1010)
T KOG1991|consen 248 PEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNF 327 (1010)
T ss_pred hhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999888999999999999999
Q ss_pred HHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCccc
Q 002257 239 LSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKEN 318 (946)
Q Consensus 239 l~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~ 318 (946)
+..|++++.+|++++||+..++..+|||.||+|++|+|+|++||.||||+.+|.++|.+||+.||.+|+.+++.+||+++
T Consensus 328 l~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~ 407 (1010)
T KOG1991|consen 328 LEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET 407 (1010)
T ss_pred HHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHH
Q 002257 319 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 398 (946)
Q Consensus 319 l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 398 (946)
++.+++|+.+++++|..++...++.|+||||++++|++++.+.+.++|+.+++.|+.+||+|+|+++.++||+||||+++
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 99999999999999988765567999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhhhhhhHHHH
Q 002257 399 QYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFT 476 (946)
Q Consensus 399 ~~~~~~f~~~~~~~~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~ 476 (946)
+|+++.|+++..+.++++.+.+||. |+++|||+.||.||+.|+.+.+ .++.++|+++++|+.|+++++++++|.+..+
T Consensus 488 ~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v 567 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV 567 (1010)
T ss_pred HHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence 9999999999999999999999998 8999999999999999999976 5577999999999999999999999999999
Q ss_pred HHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHH
Q 002257 477 LETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIM 556 (946)
Q Consensus 477 L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i 556 (946)
|+++|..|++++.|||.+++++|+.+|++++..++++.+.++++.++++|||+||++++.++++.|+++.++++.++|++
T Consensus 568 me~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi 647 (1010)
T KOG1991|consen 568 MEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVI 647 (1010)
T ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998655444556799999999999999999999999999999999999999
Q ss_pred HHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHH
Q 002257 557 RRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQ 636 (946)
Q Consensus 557 ~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~ 636 (946)
.++|+++..||+++++++...+++.++.|+|.||++||.+++++..|+.+|+++++++|+||+.+|...++ +++.|++
T Consensus 648 ~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~--s~~~y~~ 725 (1010)
T KOG1991|consen 648 GFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL--SNPDYLQ 725 (1010)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh--ccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHH
Q 002257 637 SLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSL 715 (946)
Q Consensus 637 ~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~ 715 (946)
.++.|+++++++++..+++...||+|++.++++|+|.+++|+|.+++.++.|+.. .++..++..++.|++++++|||..
T Consensus 726 il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~l 805 (1010)
T KOG1991|consen 726 ILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKL 805 (1010)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHH
Confidence 9999999999998888989999999999999999999999999999999999988 889999999999999999999999
Q ss_pred HHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhcc-ccCCCChhhHHHHHHHHHHHHHHHHH
Q 002257 716 TLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL-TADQLPGEALGRVFRATLDLLVAYKE 794 (946)
Q Consensus 716 ~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~-~~~~l~~~~~~~~~~~~~~ll~~l~~ 794 (946)
++++|++.|++..||..|++... .+.+.||||+|++||++|+.+ +.+++|..+.++++.+++.++.+||+
T Consensus 806 tL~iLe~~~~~~~ff~~wf~~~~---------~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~ 876 (1010)
T KOG1991|consen 806 TLGILENQGFLNNFFTLWFQFIN---------QFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVELLLSLPE 876 (1010)
T ss_pred HHHHHHHcCCcccHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 888899999999999999999 55666665677999999999999999
Q ss_pred HHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCC---CCCC
Q 002257 795 QVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDD---DFSD 871 (946)
Q Consensus 795 ~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~d 871 (946)
|+++|++.+++. +++++.++++++|| .. + |++|+++.+.+|.+.+...+.+..+.+++|||+|| +++|
T Consensus 877 ala~ra~~~ee~--~~e~~~~~~~~~e~---~~-~---d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~e 947 (1010)
T KOG1991|consen 877 ALAERAQVEEED--SEEGEEEDDDEEED---FI-D---DEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEE 947 (1010)
T ss_pred HHHHHHHhhccc--cccccCCCCcchhh---cc-C---ccccccccchhHHHhhccccccccccccccccccchhccccc
Confidence 999998654321 11111111111111 11 1 11111112224444443221111111222222222 4478
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhcChHHHHHHHccCCHHHHHHHHHHHHHHHHhHHHHH
Q 002257 872 DEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIE 933 (946)
Q Consensus 872 ~~~~~~pl~~~d~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~ 933 (946)
|+.++||+|+||+|.+|++++++++.+++++|+.++++|++++|+.||.++++++++|.+++
T Consensus 948 d~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~yq~l~~~L~~~q~~~lq~I~~~~~~r~a~~~ 1009 (1010)
T KOG1991|consen 948 DELFETPLDQVDPFQLFKEAITNLQSSDAVRYQKLISTLTPEQQDSLQTILTHAEQRRAVAE 1009 (1010)
T ss_pred cccccCcccccchHHHHHHHHHhhhccChHHHHHHHhcCCHHHHHHHHHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999987764
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-110 Score=908.01 Aligned_cols=867 Identities=24% Similarity=0.419 Sum_probs=776.6
Q ss_pred hhhHHHHHhcCChhHHHHHHHHHHHHHhhcCC-CCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcchH
Q 002257 3 RDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPV 78 (946)
Q Consensus 3 r~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P-~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~l 78 (946)
+++++.....++...|..+-.++..|.+.||| +.|| +.|...+++.|+ .++.||.|++++||.||||.++.|..+
T Consensus 90 ienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRwk~ndeq~di 168 (970)
T COG5656 90 IENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRWKYNDEQVDI 168 (970)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhhhccchHhhH
Confidence 45555555678899999999999999999999 9999 999999999998 789999999999999999999988899
Q ss_pred HHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCC
Q 002257 79 YRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPAD 158 (946)
Q Consensus 79 ~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d 158 (946)
..++...||.+.++.+.+.+.+ +..+.++.++++|+|++.+++++|.++...+.+..|.++++++++.|.|.+.+..|
T Consensus 169 ~~li~alfpile~~g~nl~s~~--ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkplp~evlsld 246 (970)
T COG5656 169 LMLITALFPILEKVGGNLESQG--NYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLD 246 (970)
T ss_pred HHHHHHhhHHHHHHhhccccCC--chhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCCCHHHhccC
Confidence 9999999999999999987643 45688999999999999999999999988899999999999999999998887789
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhC-CcccCHHHHHHHHH
Q 002257 159 PEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRV-GGYLPDRVTNLILQ 237 (946)
Q Consensus 159 ~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~-~~~~~d~~~~~~l~ 237 (946)
++.|..++|.|||||++-+|+|+++||+++.+ ...|..|...|.. .+|.+++.+++.++.+++ +-|++|+.++....
T Consensus 247 pevRs~~~wvKckKWa~ynLyR~fqRy~k~s~-~~~y~~f~~~f~t-~vp~il~tffkqie~wgqgqLWlsd~~LYfi~~ 324 (970)
T COG5656 247 PEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSY-KKSYLSFYITFMT-RVPMILATFFKQIEEWGQGQLWLSDIELYFIDF 324 (970)
T ss_pred hhhccccchhhhhHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCeecchHHHHHHHH
Confidence 99999999999999999999999999998765 3467888888876 899999999999998754 67999999999999
Q ss_pred HHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcc
Q 002257 238 YLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKE 317 (946)
Q Consensus 238 fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~ 317 (946)
|+..|+..+.+|++++||+.-++.++|||.+|++++++|.||+||+||+|+.+|.+++.+|+..||..++..+..++++.
T Consensus 325 Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~ 404 (970)
T COG5656 325 FVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEE 404 (970)
T ss_pred HHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred cHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHH
Q 002257 318 NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVA 397 (946)
Q Consensus 318 ~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l 397 (946)
++..+++|+..+++++..+|.+.+|.+++|||+++++++...+++.++....++.|+.+||.|.++++++|||+|||.++
T Consensus 405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~i 484 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHH
Confidence 99999999999999998888877899999999999999999888888888889999999999999999999999999999
Q ss_pred HhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHH
Q 002257 398 GQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTL 477 (946)
Q Consensus 398 ~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L 477 (946)
++++ ..|+++..+.++|+.+.+||+++++||+++||.|++.|+.+.+.++.++.|+|.+|++|+.+.+.++.|.+..+|
T Consensus 485 s~~e-eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 485 STIE-EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHHH-HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 9994 589888999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCC----CCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHH
Q 002257 478 ETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADE----DADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLL 553 (946)
Q Consensus 478 ~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~----~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~ 553 (946)
+.+|+.|++++.|||++++..|+.+|.++..+.-.++ +..+++.|++.|+++|+.+++.|+++.|.++..++..++
T Consensus 564 e~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sly 643 (970)
T COG5656 564 ESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLY 643 (970)
T ss_pred HHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999876432233 123589999999999999999999999999999999999
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhH-hhhHhhhHHHHHHHHhcCcccccccCCC
Q 002257 554 PIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWA-IDFFPNILVPLDNYISRGTAHFLTCKEP 632 (946)
Q Consensus 554 p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~ 632 (946)
|++..++.++..+|+.|+++++...++.++.++|.||.+|+.+.++..+.+ ..|+++...+++||+.+|...|. +++
T Consensus 644 pvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~--~~~ 721 (970)
T COG5656 644 PVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFM--DAG 721 (970)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccc--ccc
Confidence 999999999999999999999999999999999999999999999987544 48999999999999999999998 778
Q ss_pred chHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccC-chhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHh
Q 002257 633 DYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIADALY 710 (946)
Q Consensus 633 ~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~-~~~~l~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~ 710 (946)
.|+..++.+.+..+.++...-+|...+|++++.+++++++. .++|+|-++..+-+.+.. .+.+..+...+.+++++++
T Consensus 722 ~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli 801 (970)
T COG5656 722 IYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLI 801 (970)
T ss_pred chhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHh
Confidence 89999999999999877554567899999999999999984 789999888887766655 5566888999999999999
Q ss_pred hCHHHHHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhccc-cCCCChhhHHHHHHHHHHHH
Q 002257 711 YNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT-ADQLPGEALGRVFRATLDLL 789 (946)
Q Consensus 711 ~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~~-~~~l~~~~~~~~~~~~~~ll 789 (946)
++|..++++|+++|++..||..|++..+ +|+|+||||++++|+.+++..+ .+.++...|+++...++.+.
T Consensus 802 ~~P~eTLqiLe~qg~l~~FF~~wf~~ip---------kfkrvhdkKLsvlaIltii~l~~v~~~~e~lv~nLg~vlv~l~ 872 (970)
T COG5656 802 LRPKETLQILEEQGYLQSFFEKWFSQIP---------KFKRVHDKKLSVLAILTIIRLQEVGALPELLVHNLGEVLVALV 872 (970)
T ss_pred cChHHHHHHHHHcCcHHHHHHHHHhcCc---------chhhhhhhHhHHHHHHHHHHhcccccchhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999988 33333337999999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Q 002257 790 VAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDF 869 (946)
Q Consensus 790 ~~l~~~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 869 (946)
..||+|++.|+|+.+++ + +.. + | .. . +|.+.+ |+.|..+-.+.
T Consensus 873 ~sLPeAir~rake~d~e-~-----f~e---~-d---lt----------~----ey~e~v----------D~~D~~etfil 915 (970)
T COG5656 873 TSLPEAIRLRAKEKDDE-D-----FPE---P-D---LT----------T----EYDECV----------DASDISETFIL 915 (970)
T ss_pred HhhHHHHHHHHhhcccC-C-----CCC---c-c---cc----------h----hhhccc----------cccchhhhhhh
Confidence 99999999998643211 0 100 0 0 00 0 000000 00011111225
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhcChHHHHHHHccCCHHHHHHHHHHHH
Q 002257 870 SDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQ 923 (946)
Q Consensus 870 ~d~~~~~~pl~~~d~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~ 923 (946)
|||+.++|-+|++|+|++|+.++.+++..++++|+.++++|++++|+.||.+++
T Consensus 916 eEDplfeT~LDqvdpf~~f~ef~~nLq~~s~~~yekIi~~Lt~s~qdslq~iln 969 (970)
T COG5656 916 EEDPLFETELDQVDPFGYFSEFLSNLQPASGTYYEKIISTLTDSQQDSLQTILN 969 (970)
T ss_pred cccchhhhhhhhcchHHHHHHHHHhCCCCCchhHHHHHHhcCHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999999999998875
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-94 Score=787.72 Aligned_cols=824 Identities=19% Similarity=0.322 Sum_probs=713.6
Q ss_pred ChhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcc--cCCCcCc
Q 002257 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYE--FKSDEER 75 (946)
Q Consensus 1 ~Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~--~~~~~~~ 75 (946)
.||..|+..|.+++..|+.|++++|+.|+++|||+.||+|+|+|...++++ .+.|.|.+.|.++|+|| +|+++..
T Consensus 88 ~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~ 167 (960)
T KOG1992|consen 88 QIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALW 167 (960)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence 389999999999999999999999999999999999999999999999998 67899999999999999 6889888
Q ss_pred chHHHHHHHHhHHHHHHHHHHhhc---cCCCh----hHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcC
Q 002257 76 TPVYRIVEETFHHLLNIFNRLVQI---VNPSL----EVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLER 148 (946)
Q Consensus 76 ~~l~~i~~~~~p~L~~i~~~l~~~---~~~~~----~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~ 148 (946)
.++..++..+..++..+|.+..+. ..++. ....++.+++|+||+++++++|+|| ++||..||+.|+.+++.
T Consensus 168 ~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFF--Ednm~~wM~~F~k~l~~ 245 (960)
T KOG1992|consen 168 LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFF--EDNMKTWMGAFHKLLTY 245 (960)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHH--HhhHHHHHHHHHHHHhc
Confidence 999999999999999999876531 11111 2567788999999999999999999 67999999999999999
Q ss_pred CCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccC
Q 002257 149 PVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 228 (946)
Q Consensus 149 ~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~ 228 (946)
+.|.. .+|++ +.....++|..+|++++.+..|| +++ | ++|+|+|++.+|+++...+ .....
T Consensus 246 ~~p~l--e~~~e--e~~~l~~lka~ICEi~~LY~~kY------eEe-------f-~~fl~~fv~~~W~LL~~~s-~~~ky 306 (960)
T KOG1992|consen 246 DNPLL--ESDEE--EATVLDKLKAQICEIFNLYATKY------EEE-------F-QPFLPDFVTATWNLLVSTS-PDTKY 306 (960)
T ss_pred cCccc--ccCcc--cccHHHHHHHHHHHHHHHHHHhh------HHH-------H-HhhHHHHHHHHHHHHHhcC-CCccH
Confidence 88843 23333 35566899999999999888887 333 4 7789999999999998754 22344
Q ss_pred HHHHHHHHHHHHhhccCchhhhhch--hhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHH
Q 002257 229 DRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDF 306 (946)
Q Consensus 229 d~~~~~~l~fl~~~~~~~~~~~~l~--~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~l 306 (946)
|.+++.+++||+.+++++....++. +.+.++++.+++|+++++++|+|.|||||.||+|++.+| +|.+|+|++|.++
T Consensus 307 D~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEG-sDvdTRRR~a~dl 385 (960)
T KOG1992|consen 307 DYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEG-SDVDTRRRAAIDL 385 (960)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhccc-CCcchhHHHHHHH
Confidence 8999999999999998876555663 569999999999999999999999999999999999999 5889999999999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhh-------hhcCCcchHHHHHHHHHhcc
Q 002257 307 VSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK-------LKQTEPYKSELERMLVQHVF 379 (946)
Q Consensus 307 l~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~-------l~~~~~~~~~l~~~l~~~v~ 379 (946)
++.|++++...+++.+..+++..+++|..||.. ||+.||.+++++.++|.. ++..++.+ ++..||.++++
T Consensus 386 vrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~--nWk~kd~aiyL~talaik~~t~~~Gvtstn~lv-dv~~Ff~~~il 462 (960)
T KOG1992|consen 386 VRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSG--NWKKKDRAIYLVTALAIKGQTAKHGVTSTNELV-DVVDFFANQIL 462 (960)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhccCCCc--cccccchhhhhhHHHHhhcchhhcceeeccccc-cHHHHHHHHhh
Confidence 999999998889999999999999999999976 999999999999999876 33445565 67899999999
Q ss_pred cCCCC----CccchhHHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-------
Q 002257 380 PEFSS----PVGHLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------- 445 (946)
Q Consensus 380 p~l~~----~~~~lr~ra~~~l~~~~~~~f~~~---~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~------- 445 (946)
|+|.+ ++|+||+.+++++ +.|+++ +++.++++.++.+|+.+..+|+.|||.|++.++..++
T Consensus 463 p~L~s~~vn~~pilka~aIKy~-----~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if 537 (960)
T KOG1992|consen 463 PDLLSPNVNEFPILKADAIKYI-----YTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIF 537 (960)
T ss_pred HHhccCccccccchhhccccee-----eeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCcccccc
Confidence 99986 6899999999999 667654 8999999999999999999999999999999988764
Q ss_pred cccccccchHHHHHHHHHHHhh---hhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 002257 446 DLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 522 (946)
Q Consensus 446 ~~~~l~p~l~~il~~Ll~ll~~---~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 522 (946)
.++.+.||+..++..|+..+.. .++|++|.++++++....+.+.|+++.++.+|.+.++.+.+ || +++.
T Consensus 538 ~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~K----NP----s~P~ 609 (960)
T KOG1992|consen 538 GAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSK----NP----SNPQ 609 (960)
T ss_pred chhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhc----CC----CCch
Confidence 4577999999999999977753 68899999999999999999999999999999987777664 88 7889
Q ss_pred HHHHHHHHHHHHHHhhc-CChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHH
Q 002257 523 AAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEAL 600 (946)
Q Consensus 523 ~~~~~l~ti~~ll~~~~-~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~ 600 (946)
+.|+++++++.+++... ..|....+++..++|+++.+|+++..+|++|+|++++.++..+ +++++.+|.+||+++..-
T Consensus 610 fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~ 689 (960)
T KOG1992|consen 610 FNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPN 689 (960)
T ss_pred hHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHH
Confidence 99999999999999874 5788899999999999999999999999999999999999987 579999999999999887
Q ss_pred hhhH-hhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHccc-Cchhch
Q 002257 601 ADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG-QVDHWV 678 (946)
Q Consensus 601 ~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~-~~~~~l 678 (946)
. |+ .+++++++++|.+|++.|+..+.+. +.+..|+++++|++.|+..+. +|+.|+.+++.+++. .++||+
T Consensus 690 l-W~r~gNipalvrLl~aflk~g~~~~~~~---~~l~~iLGifqkLiaSka~Dh----~GF~LLn~i~~~~~~~~~~py~ 761 (960)
T KOG1992|consen 690 L-WKRSGNIPALVRLLQAFLKTGSQIVEAA---DKLSGILGIFQKLIASKANDH----HGFYLLNTIIESIPPNELAPYM 761 (960)
T ss_pred H-HhhcCCcHHHHHHHHHHHhcCchhhccc---ccchhHHHHHHHHhcCcccch----hHHHHHHHHHhcCCHhhhhHHH
Confidence 6 86 7899999999999999999988632 568999999999999887776 499999999999986 589999
Q ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHH
Q 002257 679 EPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKV 757 (946)
Q Consensus 679 ~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl 757 (946)
.+|+..+++|+++ ++.++++..++++.+.++.++.....+.++. ++.++|++.++++. .|..+++.+..+||+
T Consensus 762 k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~--IQ~~~fg~l~e~~i----i~~l~~i~~~~~rk~ 835 (960)
T KOG1992|consen 762 KQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDG--IQPGMFGMLLENFI----IPELPKIILRVDRKI 835 (960)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhh--cchhHHHHHHHHhc----cccchhhhhhhhHHH
Confidence 9999999999999 6677888888888888888999999999985 99999999999998 477889999999999
Q ss_pred HHHHHHHHhccccCCCChh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 002257 758 CCLGLTSLLALTADQLPGE---ALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDA 834 (946)
Q Consensus 758 ~~lal~~Ll~~~~~~l~~~---~~~~~~~~~~~ll~~l~~~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~ 834 (946)
+.+|.+++++..++.+.+. .|+.++.+++.++....+ + .- -|++ . +++ +-
T Consensus 836 ~avg~~~l~~e~~~~~d~~y~~l~~~ll~sii~lfe~p~~----~-----~~-~~e~--------~--------e~~-~i 888 (960)
T KOG1992|consen 836 MAVGATGLLTETPELLDQKYAKLWGPLLFSIIVLFELPSE----R-----TV-LDEE--------E--------EMA-EI 888 (960)
T ss_pred HHHHHhhhhhhcHHhhhHHHHhhhhhHHHHHHHHHhCChh----h-----hc-cCch--------h--------hhh-hh
Confidence 9999999999988766332 899999999999884432 0 00 0100 0 000 11
Q ss_pred CCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCC-CchHHHHHHHHHHHhhcChHHHHHHHcc-CCH
Q 002257 835 EDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDE-VDPFVFFVDTIKVMQASDPLRFQNLTQT-LEF 912 (946)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~~~pl~~-~d~~~~~~~~l~~~~~~~~~~~~~l~~~-l~~ 912 (946)
+++.+++..|.++..++ +.+ .||+.+ .|++.|+++.+..+++..|++|.++++. |++
T Consensus 889 ~e~~~f~~~F~~L~~a~--~k~-------------------~Dpl~~i~~~k~y~a~sl~~~~~~~~g~~~~~i~~~l~~ 947 (960)
T KOG1992|consen 889 EEDPGFQAAFSRLAYAG--KKP-------------------HDPLAQIKDPKQYLAQSLNKLSTASPGRFPQTISTSLPP 947 (960)
T ss_pred hcccchhHHHHHHHcCC--CCC-------------------CCchhhhhhHHHHHHHHHHHHhhcCCCCchhhhcccCCH
Confidence 23347899998887643 222 689999 7999999999999999999999988886 999
Q ss_pred HHHHHHHHHHHH
Q 002257 913 QYQALANGVAQH 924 (946)
Q Consensus 913 ~~~~~l~~~~~~ 924 (946)
|.|+.||++++.
T Consensus 948 e~q~~Lq~~~~~ 959 (960)
T KOG1992|consen 948 ENQTYLQSYLQA 959 (960)
T ss_pred HHHHHHHHHhhc
Confidence 999999999864
No 4
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-67 Score=571.87 Aligned_cols=824 Identities=17% Similarity=0.266 Sum_probs=613.9
Q ss_pred ChhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh-------hHHHHHHHHHHHHHhccc-CCC
Q 002257 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEF-KSD 72 (946)
Q Consensus 1 ~Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~-------~~~~~L~~L~~i~k~~~~-~~~ 72 (946)
+||.+++....++++++..|.|.++++|||.|||.+||+|+|+|.+.+++. ..|+.|.+|+++.|.... |+.
T Consensus 81 ~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL~ 160 (978)
T KOG1993|consen 81 FIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRLL 160 (978)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 489999999999999999999999999999999999999999999999875 469999999999999884 455
Q ss_pred cCcchHHHHHHHHhHHHHHHHHHH--------hhccCCC--hhHHHHHHHHHHHhHHHHhhhhhhhcCC--hhhHHHHHH
Q 002257 73 EERTPVYRIVEETFHHLLNIFNRL--------VQIVNPS--LEVADLIKLICKIFWSSIYLEIPKQLLD--PNVFNAWMI 140 (946)
Q Consensus 73 ~~~~~l~~i~~~~~p~L~~i~~~l--------~~~~~~~--~~~~~~~~~~lki~~~~~~~~lp~~~~~--~~~l~~w~~ 140 (946)
..|+.+.+.++.+++.+..++-+. ....... ..+.+..++.+|+++.++..+..+...+ -+.+..++.
T Consensus 161 a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F~e 240 (978)
T KOG1993|consen 161 ADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQFLE 240 (978)
T ss_pred hhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHH
Confidence 667777777777777544332221 1111100 1255677899999999988765443321 145666666
Q ss_pred HHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHh
Q 002257 141 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 220 (946)
Q Consensus 141 ~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~ 220 (946)
+....+...... ..+.-.+ -...|.-+...+.+..+++|. |-. |+ + -+.+|..+..+...+..
T Consensus 241 ~~~~~~~~~~s~---~~~~vk~--di~ek~~i~l~K~l~~l~~rh--pfs-------F~--~-~~~~~~~l~f~~~yIf~ 303 (978)
T KOG1993|consen 241 LHQRKLLSSLST---GTQSVKS--DILEKFCIKLMKVLAFLFNRH--PFS-------FS--F-YSPCPVKLEFSIDYIFD 303 (978)
T ss_pred HHHHHHHhhccc---ccchhhh--HHHHHHHHHHHHHHHHHhcCC--Ccc-------cc--c-ccccceeeehhhhhhhc
Confidence 544444332110 0111000 001233333445555555552 211 11 0 11334444444444433
Q ss_pred h-------hCCcccCHHHHHHHHHHHHhhccCchhhh-------------------------hc-hhhHHHHHHHHHhcc
Q 002257 221 I-------RVGGYLPDRVTNLILQYLSNSISKNSMYN-------------------------LL-QPRLDVLLFEIVFPL 267 (946)
Q Consensus 221 ~-------~~~~~~~d~~~~~~l~fl~~~~~~~~~~~-------------------------~l-~~~l~~li~~ii~p~ 267 (946)
. .+.....++...+|+..++.++..+. ++ .+ .+.+..+|..++..|
T Consensus 304 ~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~-~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~Y 382 (978)
T KOG1993|consen 304 EYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKN-YKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHY 382 (978)
T ss_pred ccchhcccccccccHHHHHHHHHHHHHHHHHhhc-ccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1 11122236778888888876544321 11 11 245789999999999
Q ss_pred cccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccC-CCCcCCCCchhH
Q 002257 268 MCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYD-ETPVEYKPYRQK 346 (946)
Q Consensus 268 l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~-~~~~~~~~~~~k 346 (946)
+.+|++|+|+|.+||++|+.++..+ +-.|+.|+||+.++..+...+++-..++++.++.+..+... .+..+.+....|
T Consensus 383 flLt~~eLEeW~~dPE~~~~Eq~~~-dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~K 461 (978)
T KOG1993|consen 383 FLLTEEELEEWTQDPEGWVLEQSGG-DWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLK 461 (978)
T ss_pred HhcCHHHHHHHhcChHHhhhhcccc-cceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHH
Confidence 9999999999999999999998755 24599999999999999999988888888888876654421 222334568999
Q ss_pred hHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCC---CccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 002257 347 DGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 423 (946)
Q Consensus 347 eaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~---~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~ 423 (946)
||++.++|..+..+.+. .+++.||.+.++|+++. ..+++|+|.+|++|+|.+++++ .+....+|.++++.++
T Consensus 462 DAiYaa~g~~a~~l~~~----~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~-~e~k~l~Y~a~lnLL~ 536 (978)
T KOG1993|consen 462 DAIYAAFGLAAYELSNI----LDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQK-LELKPLLYCAFLNLLQ 536 (978)
T ss_pred HHHHHHHHHHHHHHHhc----CCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheech-HhHHHHHHHHHHHhcC
Confidence 99999999999998764 27889999999999984 5689999999999999887654 3789999999999999
Q ss_pred CC-CCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhh-hhhh---HHHHHHHHHHhhCCcccccHHHHHH
Q 002257 424 DP-ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEV-ENED---LVFTLETIVDKFGEEMAPYALGLCQ 497 (946)
Q Consensus 424 d~-~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~-~~e~---l~~~L~~iv~~~~~~i~p~~~~l~~ 497 (946)
|. |.||+++|+++++..+++++ .++.+.||++.+...|+++++.+ ++|+ +..+|..++++.++.|.||+..+++
T Consensus 537 d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq 616 (978)
T KOG1993|consen 537 DQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQ 616 (978)
T ss_pred ccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 86 99999999999999999998 78899999999999999999885 4455 5577888899999999999999988
Q ss_pred HHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccch---hhHHHHHHHH
Q 002257 498 NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG---QEVFEEVLEI 574 (946)
Q Consensus 498 ~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~---~~~~~~~l~l 574 (946)
.+. .+|++++ +.++.++.++.++.+++.+++..+. .+.+.++|+++.+.+.+. ..+.|++++|
T Consensus 617 ~lp----~LWe~s~-------~e~lLr~alL~~L~~lV~alg~qS~---~~~~fL~pVIel~~D~~sP~hv~L~EDgmeL 682 (978)
T KOG1993|consen 617 YLP----LLWEESE-------EEPLLRCALLATLRNLVNALGAQSF---EFYPFLYPVIELSTDPSSPEHVYLLEDGMEL 682 (978)
T ss_pred HHH----HHHhhhc-------cCcHHHHHHHHHHHHHHHHhccCCc---cchHHHHHHHHHhcCCCCCceeehhhhHHHH
Confidence 776 6776544 4468999999999999999987553 345789999999987654 4788999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCc
Q 002257 575 VSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG 654 (946)
Q Consensus 575 l~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~ 654 (946)
|..++.+++.++|.+..+||++...+. ...++++.++.++++|+..+...|++ .|...++..+.+++.+- .++
T Consensus 683 W~~~L~n~~~l~p~ll~L~p~l~~~iE-~ste~L~t~l~Ii~sYilLd~~~fl~----~y~~~i~k~~~~~l~dv--r~e 755 (978)
T KOG1993|consen 683 WLTTLMNSQKLTPELLLLFPHLLYIIE-QSTENLPTVLMIISSYILLDNTVFLN----DYAFGIFKKLNDLLDDV--RNE 755 (978)
T ss_pred HHHHHhcccccCHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhccHHHHH----HHHHHHHHHHHHHHHHh--hHH
Confidence 999999999999999999999999988 67899999999999999999888886 68999999999888643 333
Q ss_pred ccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcC---c-hHHH
Q 002257 655 DIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILHKLG---V-ATEV 729 (946)
Q Consensus 655 ~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~---~-~~~~ 729 (946)
.....+++++.+++.-+---..+.++++..++..+.. .+.+++...++.|++|..+.||+.++.++.+.+ + .+.+
T Consensus 756 gl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~l 835 (978)
T KOG1993|consen 756 GLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAML 835 (978)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHH
Confidence 3566788888888876521122445555555555544 778999999999999999999999999998865 3 3478
Q ss_pred HHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 002257 730 FNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDD 809 (946)
Q Consensus 730 ~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~~~~~l~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~~~~~~d 809 (946)
++.|+..++ ++..+.+||+.++|+++||..+.+.+.+ .++.|++-..++|. +.+++ .. + |
T Consensus 836 i~~WI~~~~---------~I~~~k~rKl~~LalsSll~t~~~~ila-~~~~I~nl~~e~L~---eV~ed----~~-g--~ 895 (978)
T KOG1993|consen 836 IGNWILLFD---------HINHPKDRKLNTLALSSLLRTNNPDILA-VLDSIMNLWFEVLS---EVMED----AN-G--D 895 (978)
T ss_pred HHHHHHHcc---------cCCCHHHhhHHHHHHHHHhccCCcHHHH-HHhHHHHHHHHHHH---HHhhh----cc-C--c
Confidence 899999999 9999999999999999999987654444 46666666666666 33311 11 1 1
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 002257 810 DMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFV 889 (946)
Q Consensus 810 ~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~~~pl~~~d~~~~~~ 889 (946)
-.|... .||-. +-.. -+|+ ..++..+.+++. ..||+++|..+.|+.
T Consensus 896 ~~~~~~----~d~~~---e~~~-~~d~-tteq~~r~k~l~-------------------------lkDPVh~vsl~~fi~ 941 (978)
T KOG1993|consen 896 ATDYHL----NDDLS---EQGV-YEDE-TTEQDTRHKQLL-------------------------LKDPVHSVSLRSFII 941 (978)
T ss_pred hHHHHh----hhhhh---cccc-CCch-hhHHHHHHHHHh-------------------------ccCCcccccHHHHHH
Confidence 000000 11100 0001 1111 233455555552 379999999999999
Q ss_pred HHHHHHhhc-ChHHHHHHHccCCHHHHHHHHHHHH
Q 002257 890 DTIKVMQAS-DPLRFQNLTQTLEFQYQALANGVAQ 923 (946)
Q Consensus 890 ~~l~~~~~~-~~~~~~~l~~~l~~~~~~~l~~~~~ 923 (946)
+.|..++.+ +.++|++.+++++|+-.+++|.+++
T Consensus 942 ~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~ 976 (978)
T KOG1993|consen 942 SVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLS 976 (978)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHc
Confidence 999999877 4579999999999999999999875
No 5
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=3e-62 Score=544.49 Aligned_cols=830 Identities=17% Similarity=0.252 Sum_probs=597.2
Q ss_pred ChhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcch
Q 002257 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTP 77 (946)
Q Consensus 1 ~Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~ 77 (946)
+||+.|+.++..++++||+..+++|+.||+.|||++||+|+|.+.++++++ ++||||++|.+++...- .++
T Consensus 90 ~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~------~ee 163 (1005)
T KOG2274|consen 90 LIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD------VEE 163 (1005)
T ss_pred HHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH------HHH
Confidence 489999999999999999999999999999999999999999999999976 79999999999998642 123
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhh-----hh-----hhcCChhhHHHHHHHHHHHhc
Q 002257 78 VYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLE-----IP-----KQLLDPNVFNAWMILFLNVLE 147 (946)
Q Consensus 78 l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~-----lp-----~~~~~~~~l~~w~~~~~~il~ 147 (946)
+..+.+...|.+..+|.-... ++... .+....+|.|++|..+- .- .++ .+.+.+||+++-..++
T Consensus 164 ~~~~~~~~l~~m~~~f~~~~~---~s~~~-~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~--s~~l~~~~~~l~h~l~ 237 (1005)
T KOG2274|consen 164 MFFVGPVSLAEMYRIFALTIV---YSIIT-RLGAARGKLFTSCLTLITNVEEVWAEHVKVFL--SQILNQFMDILEHPLQ 237 (1005)
T ss_pred Hhcccccchhhhhhhhhhccc---cchhH-HHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhc
Confidence 334445556666666554321 22111 11112267777764331 11 122 3468888888877776
Q ss_pred CCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhh-----
Q 002257 148 RPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR----- 222 (946)
Q Consensus 148 ~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~----- 222 (946)
...+ +. |..+..+.++++.++..| |+ +..+++..++..+|+.+++..
T Consensus 238 ~~~g--------~~------~~~~~eilk~~t~l~~nf--p~------------~~~~~~~~~~~~vw~~~~~~~~~yir 289 (1005)
T KOG2274|consen 238 RNDG--------SD------FSLRMEILKCLTQLVENF--PS------------LINPFMMGMFSIVWQTLEKILAVYVR 289 (1005)
T ss_pred cccc--------ch------HHHHHHHHHHHHHHHHhh--HH------------hhhHHHHhhhhHHHHHHHHHHhhhhh
Confidence 6322 11 778899999999999886 44 345566667777787776520
Q ss_pred ------C----Ccc-------cCHHHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHH
Q 002257 223 ------V----GGY-------LPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEY 285 (946)
Q Consensus 223 ------~----~~~-------~~d~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~ef 285 (946)
+ ..+ ..+.++.+.++|++.+++.....+-++.+++.++...+ -|++++++.+|.|.+||++|
T Consensus 290 ~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v-~y~Qlseeqie~w~sD~~~f 368 (1005)
T KOG2274|consen 290 ESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLV-AYLQLSEEQIEVWTSDVNQF 368 (1005)
T ss_pred hhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhHHHHHHHhccHHHh
Confidence 0 001 12478999999999999888777778778999999877 78999999999999999999
Q ss_pred HHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCC--CcCCCCchhHhHHHHHHHHHHhhhhcC
Q 002257 286 VRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDET--PVEYKPYRQKDGALLAIGALCDKLKQT 363 (946)
Q Consensus 286 i~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~--~~~~~~~~~keaal~alg~ia~~l~~~ 363 (946)
|.+++++ ++.|.++.+++..+...++...+.++.+.....++...++ .++..||+..++.+.+.++...+
T Consensus 369 V~dEd~~----~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~---- 440 (1005)
T KOG2274|consen 369 VADEDDG----YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID---- 440 (1005)
T ss_pred hccCCCC----chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC----
Confidence 9988654 7889999999999999999888888887755545443221 11224899999999999888733
Q ss_pred CcchHHHHHHHHHhcccCCC-CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHH
Q 002257 364 EPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFV 441 (946)
Q Consensus 364 ~~~~~~l~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~ 441 (946)
+..++.-..+...+...+. +..|++-.||.|++++|++..--.++.+..++...++.+. +...+|++.|++|+..++
T Consensus 441 -~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~ 519 (1005)
T KOG2274|consen 441 -DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC 519 (1005)
T ss_pred -cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc
Confidence 2223433444445555554 5788888899999999987532355788889999999887 667889999999999888
Q ss_pred HhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh--CCcccccHHHHHHHHHHHHHHHHhhccCCCCCCCh
Q 002257 442 EACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF--GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP 519 (946)
Q Consensus 442 ~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~--~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 519 (946)
....+.|++|.++..|.++....+.|.+..+|+++.... ..+ ++..+-..++..+..+.....+||
T Consensus 520 ----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe---f~as~~skI~P~~i~lF~k~s~DP----- 587 (1005)
T KOG2274|consen 520 ----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE---FAASMESKICPLTINLFLKYSEDP----- 587 (1005)
T ss_pred ----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh---hhhhhhcchhHHHHHHHHHhcCCc-----
Confidence 367899999999999999999999998777777664433 222 222222222222223332222355
Q ss_pred hhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccch----hhHHHHHHHHHHHHHhcC-CCCCHHHH-HHH
Q 002257 520 GALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG----QEVFEEVLEIVSYMTFFS-PTISLEMW-SLW 593 (946)
Q Consensus 520 ~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~----~~~~~~~l~ll~~l~~~~-~~i~p~l~-~l~ 593 (946)
..+...-+++..++. ..+++..+.+.++|.+..+++.+. .....-++++++.++++. ++++..+. ..|
T Consensus 588 --~V~~~~qd~f~el~q----~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~F 661 (1005)
T KOG2274|consen 588 --QVASLAQDLFEELLQ----IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAF 661 (1005)
T ss_pred --hHHHHHHHHHHHHHH----HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHh
Confidence 222222333333333 344577788999999999998765 567778999999999998 47777766 999
Q ss_pred HHHHHHHh-hhHhhhHhhhHHHHHHHHhcCcccccccCCCch--HHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHc
Q 002257 594 PLMMEALA-DWAIDFFPNILVPLDNYISRGTAHFLTCKEPDY--QQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 670 (946)
Q Consensus 594 ~~l~~~~~-~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~--~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~ 670 (946)
|.+.++.. +++.+.++...+||.+||..+++++++|++.+. +..|+.++.++| ++..+++.+.++++++-+++.++
T Consensus 662 paVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLL-dp~~sds~a~~VG~lV~tLit~a 740 (1005)
T KOG2274|consen 662 PAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLL-DPETSDSAAAFVGPLVLTLITHA 740 (1005)
T ss_pred HHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHc-CCccchhHHHHHhHHHHHHHHHH
Confidence 99999954 456788999999999999999999999977544 458999999999 56678888889999999999999
Q ss_pred ccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhc------CchHHHHHHHHHhHHHHhhhc
Q 002257 671 KGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKL------GVATEVFNLWFQMLQQVKKNG 744 (946)
Q Consensus 671 ~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~------~~~~~~~~~w~~~~~~~~~~~ 744 (946)
+..+++.+..|+.+++.||+..++..+.++++.||+.+++.+++.++++|.+. .+++.++..|++++.
T Consensus 741 ~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqh------ 814 (1005)
T KOG2274|consen 741 SSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQH------ 814 (1005)
T ss_pred HHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhh------
Confidence 99999999999999999999999999999999999999999999999999983 478899999999998
Q ss_pred cccccccchhhHHHHHHHHHHhccc----cCCCChh-hHHHHH-----------------------HHHHHHHHHHHHHH
Q 002257 745 LRVNFKREHDKKVCCLGLTSLLALT----ADQLPGE-ALGRVF-----------------------RATLDLLVAYKEQV 796 (946)
Q Consensus 745 ~~~~~~~~~d~Kl~~lal~~Ll~~~----~~~l~~~-~~~~~~-----------------------~~~~~ll~~l~~~i 796 (946)
-|.|.|++|+++.++|++|+.. +++|... +.|..+ .-.+|.|+-+-.+.
T Consensus 815 ---l~~g~ye~kv~i~alc~al~~~~~~ddkrLq~V~VkGelI~s~d~~I~TRSka~k~Perwt~IPl~vKIlkLli~El 891 (1005)
T KOG2274|consen 815 ---LYFGEYEGKVSIKALCKALQHLISTDDKRLQKVRVKGELIYSMDEGIITRSKAKKNPERWTNIPLLVKILKLLISEL 891 (1005)
T ss_pred ---hhhhhhhchhhHHHHHHHHHhhhccCChhhceeeECCeecccCCCCeeehhhhccCchheeeccHHHHHHHHHHHHH
Confidence 8999999888888888877654 4455543 222221 22334443333554
Q ss_pred HHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCC-CCCCCCCCCC
Q 002257 797 AEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDS-DDDFSDDEEL 875 (946)
Q Consensus 797 ~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~d~~~~ 875 (946)
.+-.|...+. .+..-|+..|+++|+|+|.+++ .+++ ++-...++.... +.|.|+. ||+.||-+..
T Consensus 892 s~~~e~~~~~-qa~p~e~sqdd~nD~wdD~~~~---~e~~-d~l~g~~lsD~l---------~~d~D~~eDDe~dd~~~l 957 (1005)
T KOG2274|consen 892 SNVSEQNAAR-QAIPSEWSQDDGNDMWDDQPEE---EEEE-DGLAGQLLSDIL---------ETDVDEYEDDEEDDPDLL 957 (1005)
T ss_pred HHHhhccccc-ccCCchhhhhccccccccCCcC---cccc-cchhhhhHHHHH---------hccccccccccccchhhc
Confidence 4433321111 1110001112223344322111 1111 111112222221 1122222 3334556678
Q ss_pred CCCCCCCchHHHHHHHHHHHhhcChHHHHHHHccCCHHHHHHHHHHH
Q 002257 876 QSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVA 922 (946)
Q Consensus 876 ~~pl~~~d~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~ 922 (946)
.||++++|+..|+.++|..+.+++.+.|..+.++|+..+|..|+.+.
T Consensus 958 kd~~yq~dlq~yL~dFl~efa~~d~~~f~~~~~~L~d~ER~VL~~i~ 1004 (1005)
T KOG2274|consen 958 KDPLYQIDLQAYLTDFLKEFASQDRPCFIMFYEHLTDNERRVLQTIL 1004 (1005)
T ss_pred cCcchhhhHHHHHHHHHHHHHhcCCcchhHHHhccCHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999998764
No 6
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=1e-50 Score=442.32 Aligned_cols=349 Identities=26% Similarity=0.434 Sum_probs=280.1
Q ss_pred HHHhcc--cCCCcCcchHHHHHHHHhHHHHHHHHHHhh---ccCCC----hhHHHHHHHHHHHhHHHHhhhhhhhcCChh
Q 002257 63 LSRKYE--FKSDEERTPVYRIVEETFHHLLNIFNRLVQ---IVNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPN 133 (946)
Q Consensus 63 i~k~~~--~~~~~~~~~l~~i~~~~~p~L~~i~~~l~~---~~~~~----~~~~~~~~~~lki~~~~~~~~lp~~~~~~~ 133 (946)
|+|+|| +|+++...++..+++.+..+|+.+|..+.+ ....+ ....+++++++|||++++++++|++| ++
T Consensus 1 ifkr~r~~~~s~~l~~eik~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~f--ed 78 (370)
T PF08506_consen 1 IFKRYRYQFRSDELYTEIKYVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFF--ED 78 (370)
T ss_dssp HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHH--HH
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHH--HH
Confidence 689999 578888899999999999999999987653 11111 23567899999999999999999999 67
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHH
Q 002257 134 VFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 213 (946)
Q Consensus 134 ~l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~ 213 (946)
+|..||+.|..+|+.+.|... ..|++ +..+++|+|+|+|++++++.+||. + +..+|+|.|++.
T Consensus 79 ~l~~wm~~f~~~L~~~~p~l~-~~d~~--e~~~l~kvK~~i~~~~~ly~~kY~------e--------~f~~~l~~fv~~ 141 (370)
T PF08506_consen 79 NLSEWMEIFHKYLTYPNPALE-EDDDD--EPGLLEKVKAWICENLNLYAEKYE------E--------EFEPFLPTFVQA 141 (370)
T ss_dssp THHHHHHHHHHHHH--SGGG--TT-SS--S--HHHHHHHHHHHHHHHHHHH-H------H--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccC-CCCcc--cccHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHH
Confidence 999999999999999887443 22333 356789999999999999999983 2 236789999999
Q ss_pred HHHHHHhhhCCcccCHHHHHHHHHHHHhhccCchhhhhc--hhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhcc
Q 002257 214 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYD 291 (946)
Q Consensus 214 ~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~l--~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d 291 (946)
+|++|.+.+. ....|.++.++++||+++++....+..+ ++++..||+++|+|+|+++++|+|+||+||.||||++.|
T Consensus 142 vw~lL~~~~~-~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e 220 (370)
T PF08506_consen 142 VWNLLTKISQ-QPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLE 220 (370)
T ss_dssp HHHHHTC--S-SGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSC
T ss_pred HHHHHHHhhh-cccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcc
Confidence 9999988543 3345899999999999998876554455 679999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-------CC
Q 002257 292 IIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-------TE 364 (946)
Q Consensus 292 ~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-------~~ 364 (946)
+ +|.+|+|+||.+|+.+|++++++.+.+.++.++++++++|.++|.. +|+.||||++++|+++..... .+
T Consensus 221 ~-sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~--~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~ 297 (370)
T PF08506_consen 221 G-SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSN--NWRSKDGALYLIGALASKGSTTKSGVTQTN 297 (370)
T ss_dssp S-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT---HHHHHHHHHHHHHHHBSS--BTTB-S-B-
T ss_pred c-cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcc--cHHHHHHHHHHHHHHHhhhccccCCccccc
Confidence 8 6899999999999999999999999999999999999999888864 999999999999999988632 23
Q ss_pred cchHHHHHHHHHhcccCCC---CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002257 365 PYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFAL 437 (946)
Q Consensus 365 ~~~~~l~~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al 437 (946)
+.+ ++++|+.++|+|+|+ +.+|+||+||||++..|.... +++.+..+++.++++|++++.+|+.|||.|+
T Consensus 298 ~~v-~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l--~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 298 ELV-DVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL--PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTS--HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccc-cHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 343 789999999999998 579999999999999998743 6689999999999999999999999999986
No 7
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.5e-47 Score=427.50 Aligned_cols=817 Identities=16% Similarity=0.189 Sum_probs=541.8
Q ss_pred ChhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcch
Q 002257 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTP 77 (946)
Q Consensus 1 ~Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~ 77 (946)
.||.+|+.++.++++++..|.|+|++.||+.|||++||+|+|+|.+.++++ ...+.|.++++|+|++| +....+..
T Consensus 85 ~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r-~l~Rsd~l 163 (947)
T COG5657 85 LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR-RLFRSDAL 163 (947)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh-hhhccHHH
Confidence 489999999999999999999999999999999999999999999999987 45899999999999998 22222345
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcc----CCC---hhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCC
Q 002257 78 VYRIVEETFHHLLNIFNRLVQIV----NPS---LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV 150 (946)
Q Consensus 78 l~~i~~~~~p~L~~i~~~l~~~~----~~~---~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~ 150 (946)
+..+.+.+.+.+..++.+..... +.. .....+....||.|+...+++.|+++ +++++.||..|..+++...
T Consensus 164 f~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFf--Ed~l~~~m~~F~klls~~~ 241 (947)
T COG5657 164 FLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFF--EDNLDKFMEHFCKLLSYSN 241 (947)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHH--HHHHHHHHHHHHHHHhhcc
Confidence 66666666655555544332111 001 12345556677888888889999999 6799999999999998755
Q ss_pred CCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHH
Q 002257 151 PSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDR 230 (946)
Q Consensus 151 ~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~ 230 (946)
|.. .. +..+.....|+|..++.+++.+-.+|- . -...+.-.|++.+|+.+++..+ .+..|.
T Consensus 242 ~~l--q~--~~le~~~~~~l~~~i~e~f~ly~t~yp--~------------~it~li~dfv~~vw~~lttit~-~~~~d~ 302 (947)
T COG5657 242 PVL--QK--DCLEDCVYFKLKGSICEIFNLYTTKYP--E------------VITYLIYDFVEIVWNLLTTITR-PYIRDY 302 (947)
T ss_pred hhh--hh--hhcccceeeeecccHHHHHHHHhhccH--H------------HhhHHHHHHHHHHHHHHHhhcC-ccccch
Confidence 421 11 222224568999999999998887762 1 1244566889999999988653 456789
Q ss_pred HHHHHHHHHHhhcc--Cchhhhhchh----hHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHH
Q 002257 231 VTNLILQYLSNSIS--KNSMYNLLQP----RLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASM 304 (946)
Q Consensus 231 ~~~~~l~fl~~~~~--~~~~~~~l~~----~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~ 304 (946)
++...+.++..+.+ .+++++++.+ ...+++..++.|+++++++|+|.|++||.||+|+...+. -....|+|+.
T Consensus 303 Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~d-ye~~vr~~~~ 381 (947)
T COG5657 303 LVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTD-YEVNVRPCIE 381 (947)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhcccc-chhhhhHHHH
Confidence 99999999999988 5556666544 578899999999999999999999999999999776652 2377899999
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCC
Q 002257 305 DFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS 384 (946)
Q Consensus 305 ~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~ 384 (946)
+.++.+...+++-+.+.+. .++.++.+.|...+..++++|++...|...+.+.. . .++..|+.+...|++.+
T Consensus 382 ~~l~~~f~~~~~i~~~~~~----~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~---~-~~~v~~~~~~~~pd~~s 453 (947)
T COG5657 382 NELKDLFDVFGRIAVGHEL----TVIESEATTPNILDEARQLFAAYASFGLGVEAVNR---M-VDFVKFLGSIIYPDLLS 453 (947)
T ss_pred HHHHHHHHHHhhHhHHHHH----HHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHH---H-HHHHHHHHHhcCccccC
Confidence 9999998888754444444 55555566664334678888888888855555433 2 36678899999999886
Q ss_pred C----c-cchhHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhccccc-ccccchH
Q 002257 385 P----V-GHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLN-EIRPILP 455 (946)
Q Consensus 385 ~----~-~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~l~~~L~d~-~~~V~~~Aa~Al~~~~~~~~~~~-~l~p~l~ 455 (946)
+ + +++|+|+..++..|.... +.+ +..--.++.....+.+. +.+|-.+...|-...++.+.... ..-+.++
T Consensus 454 ~~~~~~~ri~~~~i~~i~~~r~~l~-~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~~~~~~le 532 (947)
T COG5657 454 PNEIIHLRILRSRIAYILTFRNQLD-SSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVCSKIGLLE 532 (947)
T ss_pred cccCceeEEehhccchheechhhhh-hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccccccccHH
Confidence 3 2 456677777776665432 222 11111122233333322 34444555566666677664222 3334455
Q ss_pred HHHHHHHHHHhh----hhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHH
Q 002257 456 QLLDEFFKLMNE----VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAI 531 (946)
Q Consensus 456 ~il~~Ll~ll~~----~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti 531 (946)
+++-.+++++.. .+.+.++.++++++..-++.+.|.+.++++.|. ++|....+|| +.+.+++..++.|
T Consensus 533 nl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~----~lv~~~~knp----s~p~~~h~~fe~I 604 (947)
T COG5657 533 NLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLD----NLVEINAKNP----SNPQFAHYTFEDI 604 (947)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHH----HHHHHHccCC----ccHHHHHHHHHHH
Confidence 555555555543 355779999999999999999998888888777 4555445677 6677899999999
Q ss_pred HHHHHhhcC-ChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHhhhH-hhh
Q 002257 532 STILESVSR-LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEALADWA-IDF 607 (946)
Q Consensus 532 ~~ll~~~~~-~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~--~i~p~l~~l~~~l~~~~~~~~-~~~ 607 (946)
+.++..... .+...+.+...+.|....++..+..++..+.+++++.+..... .+++.+.-+..+....-. |. ...
T Consensus 605 ~al~~~~~~~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~~~t~l-l~~~~~ 683 (947)
T COG5657 605 GALVFLKSGMCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPSLATEL-LPTKLE 683 (947)
T ss_pred HHHHHhhhcccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhcccCchHH-HHHHHH
Confidence 999887533 2333444555556655444444555555556665555554432 244333322221111111 32 456
Q ss_pred HhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHccc--CchhchHHHHHHH
Q 002257 608 FPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG--QVDHWVEPYLRIT 685 (946)
Q Consensus 608 l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~--~~~~~l~~il~~~ 685 (946)
+..+.+.+.+.+..+++-|.+ .+...+++++++++.++. .+ ..|.+....+..+.. ...+++..+...+
T Consensus 684 I~~~~~Ll~~~~~~~~~if~~----s~~~~vL~i~~~ll~~e~-~~----~~~f~~~~~v~~l~~~~i~~~~v~~i~~ll 754 (947)
T COG5657 684 ILKSYRLLDNPILTTGYIFKS----SGFQPVLGILQYLLGSEP-HD----ALCFLNLTVVETLYLENIYEPYVNLIFVLL 754 (947)
T ss_pred HHHHHHHHHhhhhcccccccc----cchhhhHHHHHHHHhcch-HH----HHHHhhHHHHHHhHHHHHHhhcHHHHHHHH
Confidence 777778888888887776653 567888999999997553 22 367777777777664 3678999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHh-----hCHHHHHHHHHh--cCchHHHHHHHHHhHHHHhhhccccccccchhhHHH
Q 002257 686 VERLRRAEKSYLKCLLVQVIADALY-----YNSSLTLSILHK--LGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVC 758 (946)
Q Consensus 686 ~~~L~~~~~~~~~~~~l~v~~~~~~-----~~~~~~l~~L~~--~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~ 758 (946)
++|+++.++..+...++.+|..... .+++.++...++ .+....+++.|+=..+ .+..+.|||+.
T Consensus 755 l~rl~ns~~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g~~Il~~~---------~i~~~~drKi~ 825 (947)
T COG5657 755 LSRLKNSKTERFVIKIIHVFSLVSFKDSLTVGCDNLISKINQTKNILIVQLYGNWILGFD---------EIHDSKDRKIH 825 (947)
T ss_pred HHHhhcccchHHHHHhheeeEEechhhccccCChHHHHHHHHHHHHHHHHHHhceeeccc---------hhccHHHHHHH
Confidence 9999997776666666666555432 245556655553 2334566777776666 68899999999
Q ss_pred HHHHHHHhccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002257 759 CLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGD 838 (946)
Q Consensus 759 ~lal~~Ll~~~~~~l~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~ 838 (946)
++|+++++.+..+..-+ ..-+..-++.+|. .+.+.. + .|..-+.-.|+-.|+|. +++.+
T Consensus 826 ~ig~snllrt~~~~vls--~~sv~~li~~lLs----ei~et~---~---~da~i~~~~dd~~d~~~---------~~~is 884 (947)
T COG5657 826 LIGLSNLLRTLHPEVLS--YVSVTNLIISLLS----EIFETA---S---GDAIIYELNDDYADDWF---------DGEIS 884 (947)
T ss_pred HHhHHhhhhhcCchhhh--HHHHHHHHHHHHH----HHHHhc---c---Ccceehhhccchhhhcc---------ccCcc
Confidence 99999999765432111 1122223333443 222111 1 01000000000111111 11112
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhcChHHHHHHHccCCHHHHHHH
Q 002257 839 EADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALA 918 (946)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~~~pl~~~d~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l 918 (946)
+++|.+..+-+ .+.||++++|...||-.+...+..+|.+.-+.+...|+.+.|..|
T Consensus 885 --~~~f~r~~~~~----------------------~k~Dp~~~i~~~~~~is~~m~~~~sn~g~~n~~~~~L~~~nq~~L 940 (947)
T COG5657 885 --AEEFSRLAQLE----------------------FKVDPVHDIDNTKYFISFFMEAMNSNLGNENEIVFRLPTENQSLL 940 (947)
T ss_pred --HHHHHHHHHhh----------------------ccCCCccccchHHHHHHHHHHHHHhcccchhHHHHhcCCcCHHHH
Confidence 34444443211 125999999996666666666667777777778888999999888
Q ss_pred HHH
Q 002257 919 NGV 921 (946)
Q Consensus 919 ~~~ 921 (946)
+++
T Consensus 941 ~q~ 943 (947)
T COG5657 941 EQL 943 (947)
T ss_pred HHH
Confidence 876
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-46 Score=399.96 Aligned_cols=673 Identities=17% Similarity=0.223 Sum_probs=511.2
Q ss_pred ChhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccC--CCcCc
Q 002257 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFK--SDEER 75 (946)
Q Consensus 1 ~Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~--~~~~~ 75 (946)
+||++++.++.++++.||...+.+|++|++..+-..||+++|.|.++|.++ ...||+.+|.+||++-.-. ++-..
T Consensus 90 yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~ 169 (885)
T KOG2023|consen 90 YIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT 169 (885)
T ss_pred HHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc
Confidence 489999999999999999999999999999999999999999999999988 5689999999999986522 22223
Q ss_pred chHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCC
Q 002257 76 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGE 155 (946)
Q Consensus 76 ~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~ 155 (946)
++++.+ +|.+++.+.. . ++.++..+++|.+.++. ..+..+ -.+++.|++.+.++.+.+
T Consensus 170 rpl~~m----ipkfl~f~~h----~-----spkiRs~A~~cvNq~i~-~~~qal--~~~iD~Fle~lFalanD~------ 227 (885)
T KOG2023|consen 170 RPLNIM----IPKFLQFFKH----P-----SPKIRSHAVGCVNQFII-IQTQAL--YVHIDKFLEILFALANDE------ 227 (885)
T ss_pred CchHHh----HHHHHHHHhC----C-----ChhHHHHHHhhhhheee-cCcHHH--HHHHHHHHHHHHHHccCC------
Confidence 455544 5655565553 2 56789999999887653 234445 247888888777665331
Q ss_pred CCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHH
Q 002257 156 PADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLI 235 (946)
Q Consensus 156 ~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~ 235 (946)
+ ..+||.+|+.+..+.+- .|. =+.+|++.+++.++.... ...+.+...+
T Consensus 228 --~---------~eVRk~vC~alv~Llev--r~d------------kl~phl~~IveyML~~tq------d~dE~VALEA 276 (885)
T KOG2023|consen 228 --D---------PEVRKNVCRALVFLLEV--RPD------------KLVPHLDNIVEYMLQRTQ------DVDENVALEA 276 (885)
T ss_pred --C---------HHHHHHHHHHHHHHHHh--cHH------------hcccchHHHHHHHHHHcc------CcchhHHHHH
Confidence 2 24779999999977764 232 145678888888765442 2346799999
Q ss_pred HHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcC--------hHHHHHhh----------------c-
Q 002257 236 LQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDED--------PHEYVRKG----------------Y- 290 (946)
Q Consensus 236 l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~D--------p~efi~~~----------------~- 290 (946)
.+||.+.++.+-....+.|++..++..++ ..|.+++.|+-+.+++ -+|-|+.. +
T Consensus 277 CEFwla~aeqpi~~~~L~p~l~kliPvLl-~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDd 355 (885)
T KOG2023|consen 277 CEFWLALAEQPICKEVLQPYLDKLIPVLL-SGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDD 355 (885)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHH-ccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccc
Confidence 99999999998778889999999999655 9999999998887722 22222210 0
Q ss_pred --c--ccc---cccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcC
Q 002257 291 --D--IIE---DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT 363 (946)
Q Consensus 291 --d--~~~---d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~ 363 (946)
| +.+ ..|+.|+|++..|+.|+..+++++++.+++++.+.|.+ ++|+.|||+++|+|++|+|+.+.
T Consensus 356 ddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~--------~~W~vrEagvLAlGAIAEGcM~g 427 (885)
T KOG2023|consen 356 DDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS--------EEWKVREAGVLALGAIAEGCMQG 427 (885)
T ss_pred cccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--------chhhhhhhhHHHHHHHHHHHhhh
Confidence 0 000 14999999999999999999999999999999998876 38999999999999999998762
Q ss_pred CcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 002257 364 EPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 364 ~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
+++.+.. +..++++.+.+..|.+|+.+||++|||+.+.++.+ +.+..++..+++.+-|.+..|+..||.|+..+.
T Consensus 428 --~~p~Lpe-Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 428 --FVPHLPE-LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLE 504 (885)
T ss_pred --cccchHH-HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2223322 45677778889999999999999999999766544 788999999999999999999999999999999
Q ss_pred HhcccccccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhCCcccc--cHHHHHHHHHHHHHHHHhhccCCCCC
Q 002257 442 EACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWRCMNTAEADEDA 516 (946)
Q Consensus 442 ~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~ 516 (946)
++ ..+.+.||++.|++.|...++.+.... +..++.++.+..+..+.. |..-+++.|++ -|+.= +|+
T Consensus 505 E~--A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~----KW~~l-sd~-- 575 (885)
T KOG2023|consen 505 EE--AGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIE----KWELL-SDS-- 575 (885)
T ss_pred Hh--ccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHH----HHHhc-Ccc--
Confidence 98 678999999999999999999876654 568889999888876642 55556666664 44421 122
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcC--ChhHHHHHHhhHHHHHHHhccc------c------hhhHHHHHHHHHHHHHhcC
Q 002257 517 DDPGALAAVGCLRAISTILESVSR--LPHLFVQIEPTLLPIMRRMLTT------D------GQEVFEEVLEIVSYMTFFS 582 (946)
Q Consensus 517 ~~~~~~~~~~~l~ti~~ll~~~~~--~~~~~~~l~~~l~p~i~~~l~~------~------~~~~~~~~l~ll~~l~~~~ 582 (946)
++.++ -++++++.+..+++. .| ....+.++++.+++.+++. + ..+|+--++++++.+.+..
T Consensus 576 --DKdLf--PLLEClSsia~AL~~gF~P-~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegL 650 (885)
T KOG2023|consen 576 --DKDLF--PLLECLSSIASALGVGFLP-YAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGL 650 (885)
T ss_pred --cchHH--HHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHh
Confidence 55555 467777788777753 22 1233445666777655432 1 1367777899999999876
Q ss_pred -CCCCHHHH--HHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCch
Q 002257 583 -PTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPA 659 (946)
Q Consensus 583 -~~i~p~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a 659 (946)
..+.|-+. .+...++.++++.-.+.-+.....|....+.+++.+. +++..++-++..-++... -+...+|
T Consensus 651 g~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~-----p~~~~fl~~lg~Nl~~~~--isv~nNA 723 (885)
T KOG2023|consen 651 GSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI-----PNLADFLPILGANLNPEN--ISVCNNA 723 (885)
T ss_pred hhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHhhcCChhh--chHHHHH
Confidence 35665554 5777778887743455666666667666666667666 677777776665554332 3345678
Q ss_pred hhHHHHHHHHcccCchhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHHhHH
Q 002257 660 PKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQ 738 (946)
Q Consensus 660 ~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~ 738 (946)
+.-++.+..+++....+|+.+++..++.-++. ...+.+....-..+.++-+++|+.+--.++ .|++.||..+.
T Consensus 724 ~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~------~f~~pWc~sl~ 797 (885)
T KOG2023|consen 724 IWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLD------SFMRPWCTSLR 797 (885)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHH------HHHHHHHHHhc
Confidence 99999999999888889999999998888876 445566666666788888999998876555 69999999999
Q ss_pred HHhhhccccccccchhhHHHHHHHHHHhccccCCCC
Q 002257 739 QVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLP 774 (946)
Q Consensus 739 ~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~~~~~l~ 774 (946)
++....+|--...|+|+++..++..+-
T Consensus 798 ---------~i~DneEK~sAFrG~c~mi~vNp~~vv 824 (885)
T KOG2023|consen 798 ---------NIDDNEEKESAFRGLCNMINVNPSGVV 824 (885)
T ss_pred ---------ccccchhHHHHHHHHHHheeeCchhhh
Confidence 999999999999999999998876543
No 9
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=1.7e-43 Score=393.23 Aligned_cols=407 Identities=19% Similarity=0.308 Sum_probs=315.3
Q ss_pred cccccccchHHHHHHHHHHHhh---hhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 002257 446 DLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 522 (946)
Q Consensus 446 ~~~~l~p~l~~il~~Ll~ll~~---~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 522 (946)
.++.++|++++++++||.++.. .|||++|+|+++++..+++.+.|++..++++|..++..+.+ || +++.
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~k----NP----snP~ 87 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSK----NP----SNPR 87 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHT----S-------HH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----CC----CCcc
Confidence 5788999999999999999987 78999999999999999999999999999999988877775 78 8899
Q ss_pred HHHHHHHHHHHHHHhhc-CChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHH
Q 002257 523 AAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEA 599 (946)
Q Consensus 523 ~~~~~l~ti~~ll~~~~-~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~--~i~p~l~~l~~~l~~~ 599 (946)
+.|+++|+++.+++.+. .+|+.+..+|+.++|++..+|+++..+|++|+|+|++.+++..+ ++++.++++||+++..
T Consensus 88 FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p 167 (435)
T PF03378_consen 88 FNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSP 167 (435)
T ss_dssp HHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSG
T ss_pred hhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCc
Confidence 99999999999999864 57888889999999999999999999999999999999999875 8999999999999988
Q ss_pred HhhhH-hhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHccc-Cchhc
Q 002257 600 LADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG-QVDHW 677 (946)
Q Consensus 600 ~~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~-~~~~~ 677 (946)
.. |. .+++++++++|.+|+.+++..+... ++++.++++|++++.++..+. .|++|+++|+.++|. .+.+|
T Consensus 168 ~l-We~~gniPalvrLL~a~i~k~~~~i~~~---~~l~~iLgvFQkLi~sk~~D~----~gF~LL~~iv~~~p~~~l~~y 239 (435)
T PF03378_consen 168 AL-WERRGNIPALVRLLQAYIKKDPSFIVAN---NQLEPILGVFQKLIASKANDH----YGFDLLESIVENLPPEALEPY 239 (435)
T ss_dssp GG-GGSTTTHHHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTCHH----HHHHHHHHHHHHS-HHHHGGG
T ss_pred ch-hccCCCcCcHHHHHHHHHHhCchhhcch---hhHHHHHHHHHHHHCCCCcch----HHHHHHHHHHHHCCHHHHHHH
Confidence 76 76 7899999999999999999988643 789999999999998876554 599999999999998 58999
Q ss_pred hHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhH
Q 002257 678 VEPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKK 756 (946)
Q Consensus 678 l~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~K 756 (946)
+++|+..+++||++ ++.++.+.+++++...++.++|+.+++.+++ +++++|.++++++. .|..+++.+..|||
T Consensus 240 l~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~--IQ~glF~~il~~v~----lp~~~k~~~~~erK 313 (435)
T PF03378_consen 240 LKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDS--IQPGLFGMILEKVW----LPDLQKVSGPIERK 313 (435)
T ss_dssp HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHT--TSTTHHHHHHHHTH----HHHGGG--SHHHHH
T ss_pred HHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHH--hcCCcHHHHHHHHh----cCchhhcCCcchhh
Confidence 99999999999998 5667777777777777788999999999997 78899999888877 47777999999999
Q ss_pred HHHHHHHHHhccccCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 002257 757 VCCLGLTSLLALTADQLPGE--ALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDA 834 (946)
Q Consensus 757 l~~lal~~Ll~~~~~~l~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~ 834 (946)
++++|+++||+.++....+. .|+.++.++++++...++ ...+ + +||. .++ +|
T Consensus 314 i~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~--------~~~~--~----------~e~~---~~~---~d 367 (435)
T PF03378_consen 314 ICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPPE--------ASAA--D----------EEDF---IDE---ED 367 (435)
T ss_dssp HHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTST--------T-S----------------S------------
T ss_pred HHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCcc--------cccc--c----------cccc---ccc---cc
Confidence 99999999998765432221 799999999999884221 0000 0 0000 000 11
Q ss_pred CCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCC-CchHHHHHHHHHHHhhcChHHHHHHHcc-CCH
Q 002257 835 EDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDE-VDPFVFFVDTIKVMQASDPLRFQNLTQT-LEF 912 (946)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~~~pl~~-~d~~~~~~~~l~~~~~~~~~~~~~l~~~-l~~ 912 (946)
.++.+|+..|.++..++.. . .||+.+ -|++.|+++.|+++.+++|+++..++++ |++
T Consensus 368 ~~~~gy~~~fs~L~~a~~~--~-------------------~Dp~~~i~d~~~~~~~~L~~~~~~~~G~~~~~i~~~l~~ 426 (435)
T PF03378_consen 368 VEDIGYQVSFSKLAFAGKK--P-------------------RDPLPEIPDPKQYLAQSLSKLSQAHPGKIPPLIQQQLPP 426 (435)
T ss_dssp -----TT-GGG--GGG---------------------------S-TTTTCHHHHHHHHHHHHHHHTTSSHHHHHGGGS-H
T ss_pred chhcccchhhHHHHhCCCC--C-------------------CCCCCCCCCHHHHHHHHHHHHHHhCCCchHHHHHhhCCH
Confidence 1224788888887764311 1 589998 4999999999999999999999988886 999
Q ss_pred HHHHHHHHH
Q 002257 913 QYQALANGV 921 (946)
Q Consensus 913 ~~~~~l~~~ 921 (946)
+.|+.|+++
T Consensus 427 ~~~~~L~~y 435 (435)
T PF03378_consen 427 EAQQALQQY 435 (435)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHhccC
Confidence 999999875
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=343.09 Aligned_cols=596 Identities=16% Similarity=0.254 Sum_probs=401.4
Q ss_pred hhhhHHHHHh-cCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcch
Q 002257 2 VRDHILVFVA-QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTP 77 (946)
Q Consensus 2 Ir~~Ll~~l~-~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~ 77 (946)
||+.||.++. ++.+.||+.+|.+|+.||+.+.|++||+|++.|.++.+|+ .-..|+++|..+...+.
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~--------- 150 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG--------- 150 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc---------
Confidence 7899999985 6789999999999999999999999999999999999998 34799999999887653
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCC
Q 002257 78 VYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPA 157 (946)
Q Consensus 78 l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~ 157 (946)
.....+++.++.+|.+.+++++ . .++..+++.+..+... ++..-...+.+...++-++.+++..++ .+
T Consensus 151 --~~~~~~~~~l~~lf~q~~~d~s----~-~vr~~a~rA~~a~~~~-~~~~~~~~~~~~~llP~~l~vl~~~i~----~~ 218 (1075)
T KOG2171|consen 151 --NTLQPHLDDLLRLFSQTMTDPS----S-PVRVAAVRALGAFAEY-LENNKSEVDKFRDLLPSLLNVLQEVIQ----DG 218 (1075)
T ss_pred --cccchhHHHHHHHHHHhccCCc----c-hHHHHHHHHHHHHHHH-hccchHHHHHHHHHhHHHHHHhHhhhh----cc
Confidence 1123346667777888776542 2 2677777776654322 110000023444555555555554332 22
Q ss_pred ChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHH
Q 002257 158 DPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQ 237 (946)
Q Consensus 158 d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~ 237 (946)
|++ .-+.+++.|+.+... .|+ ++.+++..+++..+++..+ +.+.+..++.+++
T Consensus 219 d~~---------~a~~~l~~l~El~e~--~pk------------~l~~~l~~ii~~~l~Ia~n----~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 219 DDD---------AAKSALEALIELLES--EPK------------LLRPHLSQIIQFSLEIAKN----KELENSIRHLALE 271 (1075)
T ss_pred chH---------HHHHHHHHHHHHHhh--chH------------HHHHHHHHHHHHHHHHhhc----ccccHHHHHHHHH
Confidence 322 226788988888876 344 5677888899988887754 4467899999999
Q ss_pred HHHhhccCchhh-hhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcC-
Q 002257 238 YLSNSISKNSMY-NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG- 315 (946)
Q Consensus 238 fl~~~~~~~~~~-~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~- 315 (946)
|+.++++..... +...+....++..++ ..| |+.+ +| +||...++.+.++..++.+.|...++.++.+.|
T Consensus 272 ~ivs~~e~Ap~~~k~~~~~~~~lv~~~l-~~m--te~~-----~D-~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g 342 (1075)
T KOG2171|consen 272 FLVSLSEYAPAMCKKLALLGHTLVPVLL-AMM--TEEE-----DD-DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG 342 (1075)
T ss_pred HHHHHHHhhHHHhhhchhhhccHHHHHH-Hhc--CCcc-----cc-hhhccccccccccccCcHHHHHHHHHHHHhcCCh
Confidence 999998874321 222333444444322 333 3322 11 334333322223468899999999999999985
Q ss_pred cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHH
Q 002257 316 KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAW 395 (946)
Q Consensus 316 ~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~ 395 (946)
+.+++++++++..++++. +|+.|.|+|+|++++++|+.+. +..++++.+ +.|++.|+++||.+|..||.
T Consensus 343 ~~v~p~~~~~l~~~l~S~--------~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il-~~Vl~~l~DphprVr~AA~n 411 (1075)
T KOG2171|consen 343 KQVLPPLFEALEAMLQST--------EWKERHAALLALSVIAEGCSDV--MIGNLPKIL-PIVLNGLNDPHPRVRYAALN 411 (1075)
T ss_pred hhehHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHcccHHH--HHHHHHHHH-HHHHhhcCCCCHHHHHHHHH
Confidence 899999999999999873 9999999999999999998763 334676654 78999999999999999999
Q ss_pred HHHhhhccccCCh---hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhh--
Q 002257 396 VAGQYAHINFSDQ---NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE-- 469 (946)
Q Consensus 396 ~l~~~~~~~f~~~---~~~~~~~~~l~~~L~d~-~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~-- 469 (946)
++||++. .|.+. .++..+.++++..+.++ +.+|+.+||.|+-+|.+.+ .++.+.||++.+|+.++.++.+.+
T Consensus 412 aigQ~st-dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 412 AIGQMST-DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLLLLLQSSKP 489 (1075)
T ss_pred HHHhhhh-hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 9999986 56554 45666777888888876 5679999999999999998 799999999999997777765543
Q ss_pred --hhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 002257 470 --NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ 547 (946)
Q Consensus 470 --~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~ 547 (946)
-|..+.+|.++....++.+.||...+++.|...+.. .. + ++....+..++++++.+-.++++.+ +..
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n----~~-~----~d~r~LrgktmEcisli~~AVGke~--F~~ 558 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQN----AD-D----KDLRELRGKTMECLSLIARAVGKEK--FLP 558 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhC----CC-c----hhhHHHHhhHHHHHHHHHHHhhhhh--hhH
Confidence 356788999999999999999999999988754322 11 1 2555667778999999999987532 222
Q ss_pred HHhhHHHHHHHhcccc---hhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhH-hhhHhhhHHHHHHHHhcC
Q 002257 548 IEPTLLPIMRRMLTTD---GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWA-IDFFPNILVPLDNYISRG 622 (946)
Q Consensus 548 l~~~l~p~i~~~l~~~---~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~~~-~~~l~~~~~~L~~~i~~~ 622 (946)
+.+-++.++...-.++ ..-...+.+..|+.+-+.. +.+.|.+..+.|.++....... ...+.+ ....++-..+
T Consensus 559 ~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--~d~e~~~~~~ 636 (1075)
T KOG2171|consen 559 LAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--EDEEEEQDLD 636 (1075)
T ss_pred hHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--hhhhhccccc
Confidence 3333333333221111 1234566666776666543 4566666666666655533110 000000 0000000000
Q ss_pred cccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHh
Q 002257 623 TAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 691 (946)
Q Consensus 623 ~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~ 691 (946)
.-.+..-++.. -++|-... -.++..||..+..+...++..+.||+.+.++..+..+.-
T Consensus 637 ~~e~~~~~~~e----~~~I~Tsv-------l~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f 694 (1075)
T KOG2171|consen 637 GWEVVELGDKE----NIGIRTSV-------LDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKF 694 (1075)
T ss_pred cchhhccCCce----eeeeeehh-------HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 00000000000 11221111 223567999999999999999999999999966666654
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.9e-29 Score=272.95 Aligned_cols=590 Identities=16% Similarity=0.248 Sum_probs=393.1
Q ss_pred ChhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCC-CCchhhHHHHHHhcchh-h---HHHHHHHHHHHHHhcccCCCcCc
Q 002257 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-Q---VYGALFVLRILSRKYEFKSDEER 75 (946)
Q Consensus 1 ~Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P-~~Wp~Ll~~l~~~l~s~-~---~~~~L~~L~~i~k~~~~~~~~~~ 75 (946)
.||.+++.+|.++.+..++..+.+|+.||..+.| ++||+|++.++..+..+ . -.++|.++..+|.+.+.
T Consensus 90 qVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~p------ 163 (859)
T KOG1241|consen 90 QVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP------ 163 (859)
T ss_pred HHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH------
Confidence 3899999999999999999999999999999999 99999999999999776 2 26999999999987541
Q ss_pred chHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhh-hcCChhhHHHHHHHHHHHhcCCCCCCC
Q 002257 76 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QLLDPNVFNAWMILFLNVLERPVPSEG 154 (946)
Q Consensus 76 ~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~-~~~~~~~l~~w~~~~~~il~~~~~~~~ 154 (946)
..+....-..|..|.+..... ..+..++..++++++++..+ .. -|.++..-+-.|+. +++.
T Consensus 164 ---evl~~~sN~iLtaIv~gmrk~----e~s~~vRLaa~~aL~nsLef--~~~nF~~E~ern~iMqv---vcEa------ 225 (859)
T KOG1241|consen 164 ---EVLEQQSNDILTAIVQGMRKE----ETSAAVRLAALNALYNSLEF--TKANFNNEMERNYIMQV---VCEA------ 225 (859)
T ss_pred ---HHHHHHHhHHHHHHHhhcccc----CCchhHHHHHHHHHHHHHHH--HHHhhccHhhhceeeee---eeec------
Confidence 122233333444555543222 22556788899999877433 22 23222222222222 2221
Q ss_pred CCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHH-HHHHHHHHHHhhhCCcccCHHHHH
Q 002257 155 EPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGK-ILECHLNLLNRIRVGGYLPDRVTN 233 (946)
Q Consensus 155 ~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~-~l~~~~~~l~~~~~~~~~~d~~~~ 233 (946)
..+ +| .+++..++.||+++..-|+. |+.+|+.+ ++..++.-.. ...|.+..
T Consensus 226 tq~-~d-------~~i~~aa~~ClvkIm~LyY~--------------~m~~yM~~alfaitl~amk------s~~deVal 277 (859)
T KOG1241|consen 226 TQS-PD-------EEIQVAAFQCLVKIMSLYYE--------------FMEPYMEQALFAITLAAMK------SDNDEVAL 277 (859)
T ss_pred ccC-Cc-------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHc------CCcHHHHH
Confidence 111 12 46778899999999998742 45555443 4443333221 23589999
Q ss_pred HHHHHHHhhccCchh----hh-hc----hh----hHHHHHHHHHhcccccChhhHhhhhc-ChHHHHHhhccccccccCH
Q 002257 234 LILQYLSNSISKNSM----YN-LL----QP----RLDVLLFEIVFPLMCFNDNDQKLWDE-DPHEYVRKGYDIIEDLYSP 299 (946)
Q Consensus 234 ~~l~fl~~~~~~~~~----~~-~l----~~----~l~~li~~ii~p~l~lt~~d~e~we~-Dp~efi~~~~d~~~d~~s~ 299 (946)
++++||++++..+-- +. .. .| ....-+..++ |.+. +.... || +..+|.|+|
T Consensus 278 QaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~-P~Ll------~~L~kqde--------~~d~DdWnp 342 (859)
T KOG1241|consen 278 QAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVV-PVLL------ELLTKQDE--------DDDDDDWNP 342 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhh-HHHH------HHHHhCCC--------CcccccCcH
Confidence 999999988764321 00 00 11 0111111111 3221 11111 21 112355999
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcC--CcchHHHHHHHHHh
Q 002257 300 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT--EPYKSELERMLVQH 377 (946)
Q Consensus 300 R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~--~~~~~~l~~~l~~~ 377 (946)
..||+.+|.-+++..++.+++.+++|+.+.+++. +|+.||||.+++|++-++-... .+++.+. .+.
T Consensus 343 ~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~p--------dwr~reaavmAFGSIl~gp~~~~Lt~iV~qa----lp~ 410 (859)
T KOG1241|consen 343 AKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNP--------DWRNREAAVMAFGSILEGPEPDKLTPIVIQA----LPS 410 (859)
T ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCc--------chhhhhHHHHHHHhhhcCCchhhhhHHHhhh----hHH
Confidence 9999999999999999999999999999988762 9999999999999999985432 1222222 233
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-------cc
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-------DL 447 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~---f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-------~~ 447 (946)
++....++.-++|..+.|++|+.++.. ..+++++...++.++..|+|. +.|...+|.|+..+.+... ..
T Consensus 411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt 489 (859)
T KOG1241|consen 411 IINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQT 489 (859)
T ss_pred HHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 444556889999999999999998732 124478889999999999885 8899999999999997642 12
Q ss_pred cccccchHHHHHHHHHHHhhhh-hhh-----HHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhh
Q 002257 448 NEIRPILPQLLDEFFKLMNEVE-NED-----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 521 (946)
Q Consensus 448 ~~l~p~l~~il~~Ll~ll~~~~-~e~-----l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 521 (946)
+...|+.+.|++.|++.-+..+ ++. ...+|+.+|....+.+.|....+...+..-+.++++++..+-++-....
T Consensus 490 ~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~ 569 (859)
T KOG1241|consen 490 DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLN 569 (859)
T ss_pred CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHH
Confidence 2455899999999999988755 443 4578888998888887776665554444444444442211111000111
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHH
Q 002257 522 LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEA 599 (946)
Q Consensus 522 ~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~ 599 (946)
-.-.-+..++..+++.++.. ..+..+.++..+..+++.. +.-.-+++|--++++++.. +.+...|..+.|.+..-
T Consensus 570 eLQs~Lc~~Lq~i~rk~~~~---~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~g 646 (859)
T KOG1241|consen 570 ELQSLLCNTLQSIIRKVGSD---IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMG 646 (859)
T ss_pred HHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 12223556677777776542 3344555666666666663 3345577888888888764 56666777777887766
Q ss_pred Hhhh--------HhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcc
Q 002257 600 LADW--------AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCK 671 (946)
Q Consensus 600 ~~~~--------~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~ 671 (946)
+.+. ..+.+.++.+.|+ +.|+ +|...++..+-+.|++++.+.+.+.....+.+.|....+
T Consensus 647 L~n~~e~qVc~~aVglVgdl~raL~-------~~i~-----py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg 714 (859)
T KOG1241|consen 647 LSNFQEYQVCAAAVGLVGDLARALE-------DDIL-----PYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIG 714 (859)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHH-------hhhh-----hHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHH
Confidence 6321 1334444444443 2344 788888888888998998888888889999999999999
Q ss_pred cCchhchHHHHHHH
Q 002257 672 GQVDHWVEPYLRIT 685 (946)
Q Consensus 672 ~~~~~~l~~il~~~ 685 (946)
.++.+|+..++..+
T Consensus 715 ~~F~~Yl~~vm~ll 728 (859)
T KOG1241|consen 715 ADFEPYLEMVMPLL 728 (859)
T ss_pred HhHHHHHHHHHHHH
Confidence 99999888776654
No 12
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.8e-24 Score=230.79 Aligned_cols=601 Identities=13% Similarity=0.158 Sum_probs=371.4
Q ss_pred ChhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCC-CCchhhHHHHHHhcchh----hHHHHHHHHHHHHHhcccCCCcCc
Q 002257 1 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLRILSRKYEFKSDEER 75 (946)
Q Consensus 1 ~Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P-~~Wp~Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~~~~~~~~ 75 (946)
.||.+.+++|.++.+.+.+..|.+++.||+++.| +.||+|+..++.....+ ....+|.++...|++-
T Consensus 94 qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-------- 165 (858)
T COG5215 94 QVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-------- 165 (858)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc--------
Confidence 3789999999999999999999999999999999 89999999999988766 3467899999999762
Q ss_pred chHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCC
Q 002257 76 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGE 155 (946)
Q Consensus 76 ~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~ 155 (946)
.| ..++...--.|..+....... ..+..++..++|+++.... .....|..++.-+.+|+....+-+.
T Consensus 166 ~P-e~li~~sN~il~aiv~ga~k~----et~~avRLaaL~aL~dsl~-fv~~nf~~E~erNy~mqvvceatq~------- 232 (858)
T COG5215 166 AP-EDLIQMSNVILFAIVMGALKN----ETTSAVRLAALKALMDSLM-FVQGNFCYEEERNYFMQVVCEATQG------- 232 (858)
T ss_pred CH-HHHHHHhhHHHHHHHHhhccc----CchHHHHHHHHHHHHHHHH-HHHHhhcchhhhchhheeeehhccC-------
Confidence 12 334444444555655554332 2255678889999887431 2223333344444555543332211
Q ss_pred CCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHH
Q 002257 156 PADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLI 235 (946)
Q Consensus 156 ~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~ 235 (946)
.| ..+...+|.||+++..-|++ |+.+| ++..+-.+... .-+.-.|++..++
T Consensus 233 -~d---------~e~q~aafgCl~kim~LyY~--------------fm~~y----mE~aL~alt~~-~mks~nd~va~qa 283 (858)
T COG5215 233 -ND---------EELQHAAFGCLNKIMMLYYK--------------FMQSY----MENALAALTGR-FMKSQNDEVAIQA 283 (858)
T ss_pred -Cc---------HHHHHHHHHHHHHHHHHHHH--------------HHHHH----HHHHHHHHHHH-HhcCcchHHHHHH
Confidence 12 23557799999999987742 33333 33333322221 0112348999999
Q ss_pred HHHHHhhccCchhhhh----c-----hhh--HHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHH
Q 002257 236 LQYLSNSISKNSMYNL----L-----QPR--LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASM 304 (946)
Q Consensus 236 l~fl~~~~~~~~~~~~----l-----~~~--l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~ 304 (946)
++||+++++.+.--.. + ++| ...-+.. |+|.+. .-++.=.+|| .+|.|++..||.
T Consensus 284 vEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~d-vlP~lL---~LL~~q~ed~----------~~DdWn~smaA~ 349 (858)
T COG5215 284 VEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVAD-VLPELL---SLLEKQGEDY----------YGDDWNPSMAAS 349 (858)
T ss_pred HHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHH-HHHHHH---HHHHhcCCCc----------cccccchhhhHH
Confidence 9999998765432111 1 111 0111111 123221 0001001223 235699999999
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcC--CcchHHHHHHHHHhcccCC
Q 002257 305 DFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEF 382 (946)
Q Consensus 305 ~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~--~~~~~~l~~~l~~~v~p~l 382 (946)
.+|.-.++..|+.++.+++.|+.+.+++ ++|+.|||+.+|+|++.++-.+. -+++.+ ...-+..+.
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~--------~~w~nreaavmAfGSvm~gp~~~~lT~~V~q----alp~i~n~m 417 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRS--------ESWANREAAVMAFGSVMHGPCEDCLTKIVPQ----ALPGIENEM 417 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccC--------chhhhHHHHHHHhhhhhcCccHHHHHhhHHh----hhHHHHHhc
Confidence 9999999999999999999999999876 39999999999999999884321 112211 122333345
Q ss_pred CCCccchhHHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-----cccccccch
Q 002257 383 SSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-----DLNEIRPIL 454 (946)
Q Consensus 383 ~~~~~~lr~ra~~~l~~~~~~~---f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-----~~~~l~p~l 454 (946)
.++.-+++.++.||+|++++.. ..+..++.-...+.+..|.|. +.+....+++..++.++.. ..+.+.|+.
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY 496 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFY 496 (858)
T ss_pred ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHH
Confidence 5788999999999999998732 234467777777777777764 5566778899999988752 356788999
Q ss_pred HHHHHHHHHHHhhhhhhh-----HHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhcc--CCCCCCChhhHHHHHH
Q 002257 455 PQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAE--ADEDADDPGALAAVGC 527 (946)
Q Consensus 455 ~~il~~Ll~ll~~~~~e~-----l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~--~d~~~~~~~~~~~~~~ 527 (946)
+.|+..|++.-+...+|. +..+|.+++....+.+.|....+......-+.+.++-.+ -+-++.-...-....+
T Consensus 497 ~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~ 576 (858)
T COG5215 497 LAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNY 576 (858)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999988877766 567888888888887777655554433333333332110 0000000111112233
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchh-hHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhHh
Q 002257 528 LRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAI 605 (946)
Q Consensus 528 l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~-~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~~~~ 605 (946)
+..+..+++.-.. -+...+..++.++..+++.... -..++++--++.+.... ..+....-.+.|.+.+.+...+.
T Consensus 577 ~~vl~aiir~~~~---~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~ 653 (858)
T COG5215 577 IGVLEAIIRTRRR---DIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDR 653 (858)
T ss_pred HHHHHHHHHhcCC---CcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhH
Confidence 4444555554322 1334556677777777766433 33455665555554322 22333333444555554432222
Q ss_pred hhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHH
Q 002257 606 DFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRIT 685 (946)
Q Consensus 606 ~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~ 685 (946)
......+.++......=...|. .|...+++.+.+.++++....+-+.....+.+.|..+.+..+.+|+..|+...
T Consensus 654 ~v~~~avglvgdlantl~~df~-----~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 654 FVLNSAVGLVGDLANTLGTDFN-----IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222222222111111112243 57777788888888877766666677888999999999988889988776554
Q ss_pred H
Q 002257 686 V 686 (946)
Q Consensus 686 ~ 686 (946)
.
T Consensus 729 q 729 (858)
T COG5215 729 Q 729 (858)
T ss_pred H
Confidence 3
No 13
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=4.6e-12 Score=148.93 Aligned_cols=702 Identities=13% Similarity=0.143 Sum_probs=400.8
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCch----hhHHHHHHhcchh--hH-HHHHHHHHHHHHhcccCCCcCcch
Q 002257 5 HILVFVAQVPPLLRVQLGECLKTIIHADYPEQWP----HLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTP 77 (946)
Q Consensus 5 ~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp----~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~~~~~~~ 77 (946)
.|+++..+++.+.|-..-.+++.+.. .|++.-. ++++-+.+.++.+ .+ ..+++++..+..... . ...
T Consensus 122 ~L~q~~~S~~~~~rE~al~il~s~~~-~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~----~-~~~ 195 (1075)
T KOG2171|consen 122 FLFQSTKSPNPSLRESALLILSSLPE-TFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE----N-NKS 195 (1075)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhhhh-hhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc----c-chH
Confidence 45566667889999988888888875 4665554 5666666666555 34 477888888887643 1 123
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCC
Q 002257 78 VYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPA 157 (946)
Q Consensus 78 l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~ 157 (946)
....+..++|.+++++...++.++ ......++++|.-+.. ..|+.+ .+++...+++.+.+.... .-
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d-----~~~a~~~l~~l~El~e-~~pk~l--~~~l~~ii~~~l~Ia~n~------~l 261 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGD-----DDAAKSALEALIELLE-SEPKLL--RPHLSQIIQFSLEIAKNK------EL 261 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccc-----hHHHHHHHHHHHHHHh-hchHHH--HHHHHHHHHHHHHHhhcc------cc
Confidence 334556778888888888776542 1224666777665542 346777 468888888888887642 12
Q ss_pred ChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhh-CCccc---------
Q 002257 158 DPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR-VGGYL--------- 227 (946)
Q Consensus 158 d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~-~~~~~--------- 227 (946)
++ .+|..+++++..+. +| .|..++. ..++.+.++..++.+..... ...|.
T Consensus 262 ~~---------~~R~~ALe~ivs~~-e~-Ap~~~k~---------~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 262 EN---------SIRHLALEFLVSLS-EY-APAMCKK---------LALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred cH---------HHHHHHHHHHHHHH-Hh-hHHHhhh---------chhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 33 34567888887544 44 3432221 12345555555554443211 11111
Q ss_pred ---CHHHHHHHHHHHHhhccCch----------------hhh------------------hchhhHHHHHHHHHhccccc
Q 002257 228 ---PDRVTNLILQYLSNSISKNS----------------MYN------------------LLQPRLDVLLFEIVFPLMCF 270 (946)
Q Consensus 228 ---~d~~~~~~l~fl~~~~~~~~----------------~~~------------------~l~~~l~~li~~ii~p~l~l 270 (946)
......++++.++..+..+. .|+ .+++++++++..++ +.++=
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl-~~l~D 400 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL-NGLND 400 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-hhcCC
Confidence 12445555555554443221 121 34567888888655 66652
Q ss_pred ChhhH--------hhhhcChH----HHHHhhc-----cccccccCHHHH--HHHHHHHHHHhcCcccHHHHHHHHHH-hh
Q 002257 271 NDNDQ--------KLWDEDPH----EYVRKGY-----DIIEDLYSPRTA--SMDFVSELVRKRGKENLQKFIQFIVG-IF 330 (946)
Q Consensus 271 t~~d~--------e~we~Dp~----efi~~~~-----d~~~d~~s~R~a--a~~ll~~l~~~~~~~~l~~ll~~i~~-~l 330 (946)
+.-.+ -.+..|-. -+.+... ...++..++|.. |+..+..+.+...+..+.+.++.+.+ .+
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 21111 11112211 1111111 111234566654 45556666666667677676666555 44
Q ss_pred cccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-CCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh-
Q 002257 331 KRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ- 408 (946)
Q Consensus 331 ~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~- 408 (946)
.-..+++ ..+.+|.++.+||++|+...+ ..+|.+-+.+.+.+.+...=.....-+|+....|+|-.+....+..
T Consensus 481 ~~L~~~~----~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 481 LLLLQSS----KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHhcCC----chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhh
Confidence 3332322 568999999999999998754 4456555555555444332223568899999999998865443322
Q ss_pred -hHHHHHHHHHHhc---CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhh---------------
Q 002257 409 -NNFRKALHSVVSG---LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE--------------- 469 (946)
Q Consensus 409 -~~~~~~~~~l~~~---L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~--------------- 469 (946)
+...++++.+... ..+.+-|.+.+...++.++|+. ..+.|.||++.+|..+++..+..+
T Consensus 557 ~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i--lg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~ 634 (1075)
T KOG2171|consen 557 LPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI--LGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQD 634 (1075)
T ss_pred hHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH--hchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccc
Confidence 5677777777776 4456889999999999999998 579999999999999998764310
Q ss_pred ----------h--------------hhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHH
Q 002257 470 ----------N--------------EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 525 (946)
Q Consensus 470 ----------~--------------e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 525 (946)
+ ++-...|..+....++.+.||+.+.....+..+.-... + -.+.
T Consensus 635 ~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fh----d--------gVR~ 702 (1075)
T KOG2171|consen 635 LDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFH----D--------GVRK 702 (1075)
T ss_pred cccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhh----h--------HHHH
Confidence 0 11123344445556788999999887722211110000 0 0111
Q ss_pred HHHHHHHHHHHhh----cCChhHHHHHHhhHHHHHHHhcccc--------------------------------------
Q 002257 526 GCLRAISTILESV----SRLPHLFVQIEPTLLPIMRRMLTTD-------------------------------------- 563 (946)
Q Consensus 526 ~~l~ti~~ll~~~----~~~~~~~~~l~~~l~p~i~~~l~~~-------------------------------------- 563 (946)
..++++..++++. ...|.....+-..+.|.+...+..+
T Consensus 703 aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~ 782 (1075)
T KOG2171|consen 703 AAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLL 782 (1075)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHH
Confidence 1222222222211 0111111111111111111111110
Q ss_pred ---------------------------------hhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhHhhhHh
Q 002257 564 ---------------------------------GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFP 609 (946)
Q Consensus 564 ---------------------------------~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~~~~~~l~ 609 (946)
..+++..+.+++.++.+.. +.+-|.+..++|.+...+.+...---+
T Consensus 783 ~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~ 862 (1075)
T KOG2171|consen 783 AQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQ 862 (1075)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHH
Confidence 0013444555555555443 466666667777776665431100011
Q ss_pred hhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHH
Q 002257 610 NILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL 689 (946)
Q Consensus 610 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L 689 (946)
-.+.++..-+.++.. +.++|.+.++..+-..+.+. +.+.+..|..-++.+.++.+..+.+.....+..+...+
T Consensus 863 ~av~~~~d~ie~~~~-----a~~~~~~~~~p~~~~~~~d~--~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~i 935 (1075)
T KOG2171|consen 863 WAVCIFDDLIEGCGE-----ASAKYKERFLPLVLEALQDS--DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVL 935 (1075)
T ss_pred HHHHHHHHHHHhccc-----ccchHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 112233333444333 23367888877777777554 34445667777888888877666666666666665555
Q ss_pred Hh-----hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHH
Q 002257 690 RR-----AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTS 764 (946)
Q Consensus 690 ~~-----~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ 764 (946)
+. +......-..+.-|++.++++|...- .+.++..|+..++ ......+-+-..=-|+.
T Consensus 936 q~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--------vdqvl~~~l~~LP---------l~~D~eEa~~iy~~l~~ 998 (1075)
T KOG2171|consen 936 QPPLARTEENRRATENAIGAIAKILLFNPNRIP--------VDQVLPAWLSWLP---------LKEDKEEAVPIYTFLSD 998 (1075)
T ss_pred cChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--------HHHHHHHHHHhCC---------CccchhhhhhHHHHHHH
Confidence 43 34455666778889999998887553 4578999999999 77777778888888999
Q ss_pred HhccccCCCChhhHHHHHHHHHHHHH
Q 002257 765 LLALTADQLPGEALGRVFRATLDLLV 790 (946)
Q Consensus 765 Ll~~~~~~l~~~~~~~~~~~~~~ll~ 790 (946)
|+..+++.+-.. -++.+..++.++.
T Consensus 999 L~e~n~p~v~~~-~n~~ip~i~~v~~ 1023 (1075)
T KOG2171|consen 999 LYESNHPIVLGP-NNQNIPKILSVCA 1023 (1075)
T ss_pred HHHhCCCeeeCC-CcccchHHHHHHH
Confidence 998887654221 2234455555554
No 14
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.3e-11 Score=132.63 Aligned_cols=608 Identities=13% Similarity=0.151 Sum_probs=354.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHH-------hhcCCCCc-hhhHHHHHHhcchh--hH-HHHHHHHHHHHHhcccCCCcC
Q 002257 6 ILVFVAQVPPLLRVQLGECLKTII-------HADYPEQW-PHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEE 74 (946)
Q Consensus 6 Ll~~l~~~~~~ir~ql~~~is~Ia-------~~D~P~~W-p~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~~~~ 74 (946)
|.+.|.+++....--.--++++|. ..|++.+= .-++|..++..++. .+ --|+.|++++.-. .
T Consensus 133 L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-------~ 205 (885)
T KOG2023|consen 133 LCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-------Q 205 (885)
T ss_pred HHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-------C
Confidence 445555565555444444555554 44555322 23788888888876 44 3677888877642 1
Q ss_pred cchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCC
Q 002257 75 RTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEG 154 (946)
Q Consensus 75 ~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~ 154 (946)
...+..-+..++..++.+. +++..++++.+|..|..+... .|+-+ .+++...++.++...+.
T Consensus 206 ~qal~~~iD~Fle~lFala---------nD~~~eVRk~vC~alv~Llev-r~dkl--~phl~~IveyML~~tqd------ 267 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALA---------NDEDPEVRKNVCRALVFLLEV-RPDKL--VPHLDNIVEYMLQRTQD------ 267 (885)
T ss_pred cHHHHHHHHHHHHHHHHHc---------cCCCHHHHHHHHHHHHHHHHh-cHHhc--ccchHHHHHHHHHHccC------
Confidence 1233444444444433321 234678899999999877544 35555 35787888877766543
Q ss_pred CCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhC--------C--
Q 002257 155 EPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRV--------G-- 224 (946)
Q Consensus 155 ~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~--------~-- 224 (946)
.|++ +--++|+....+.+. | ..+..+.+|++.++...++-.. |+. .
T Consensus 268 --~dE~---------VALEACEFwla~aeq---p---------i~~~~L~p~l~kliPvLl~~M~-Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 268 --VDEN---------VALEACEFWLALAEQ---P---------ICKEVLQPYLDKLIPVLLSGMV-YSDDDIILLKNNEE 323 (885)
T ss_pred --cchh---------HHHHHHHHHHHHhcC---c---------CcHHHHHHHHHHHHHHHHccCc-cccccHHHhcCccc
Confidence 1222 335577766555543 2 1223566777777766543211 100 0
Q ss_pred -cccC-------H------------------------------------HHHHHHHHHHHhhccCchhhhhchhhHHHHH
Q 002257 225 -GYLP-------D------------------------------------RVTNLILQYLSNSISKNSMYNLLQPRLDVLL 260 (946)
Q Consensus 225 -~~~~-------d------------------------------------~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li 260 (946)
..+. + ++-..++..++ +.+..=+
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------------nvf~~el 390 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------------NVFGDEL 390 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------------HhhHHHH
Confidence 0000 0 11112222222 2222111
Q ss_pred HHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHhhcccCCCC
Q 002257 261 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG---KENLQKFIQFIVGIFKRYDETP 337 (946)
Q Consensus 261 ~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~---~~~l~~ll~~i~~~l~~~~~~~ 337 (946)
-.+++|.+. +.. ..+.|-.|.|+.-.+..+++--- -+.++.+.+|+.+.|..-
T Consensus 391 L~~l~PlLk------------------~~L--~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK---- 446 (885)
T KOG2023|consen 391 LPILLPLLK------------------EHL--SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK---- 446 (885)
T ss_pred HHHHHHHHH------------------HHc--CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC----
Confidence 223345433 111 12347778888888888887431 356677888888888652
Q ss_pred cCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh--hHHHHHH
Q 002257 338 VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKAL 415 (946)
Q Consensus 338 ~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~ 415 (946)
+...|--....++-.+..+.+.... ..+.+.+.. ++.-+-+.+..++-+||-.+..+.+-- -++ +++..++
T Consensus 447 ----kplVRsITCWTLsRys~wv~~~~~~-~~f~pvL~~-ll~~llD~NK~VQEAAcsAfAtleE~A-~~eLVp~l~~IL 519 (885)
T KOG2023|consen 447 ----KPLVRSITCWTLSRYSKWVVQDSRD-EYFKPVLEG-LLRRLLDSNKKVQEAACSAFATLEEEA-GEELVPYLEYIL 519 (885)
T ss_pred ----ccceeeeeeeeHhhhhhhHhcCChH-hhhHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHhc-cchhHHHHHHHH
Confidence 3344444444555555554432211 012222211 111223688999999999888885411 111 4677778
Q ss_pred HHHHhcCC---CCCCchHHHHHHHHHHHHHhc-ccccccccchHHHHHHHHHHHhhhhhhh--HHHHHHHHHHhhCCccc
Q 002257 416 HSVVSGLR---DPELPVRVDSVFALRSFVEAC-RDLNEIRPILPQLLDEFFKLMNEVENED--LVFTLETIVDKFGEEMA 489 (946)
Q Consensus 416 ~~l~~~L~---d~~~~V~~~Aa~Al~~~~~~~-~~~~~l~p~l~~il~~Ll~ll~~~~~e~--l~~~L~~iv~~~~~~i~ 489 (946)
..++.+++ ..++.+-+-|..+|..-+.+. +.+.+++=.+|+++++.-.+.++ +.|- +.+|+.+++...+..+.
T Consensus 520 ~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~-DKdLfPLLEClSsia~AL~~gF~ 598 (885)
T KOG2023|consen 520 DQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS-DKDLFPLLECLSSIASALGVGFL 598 (885)
T ss_pred HHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc-cchHHHHHHHHHHHHHHHhcccc
Confidence 87777775 467888787777777665432 23455666777777776554432 2222 78999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhh---ccCCCC-CCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchh
Q 002257 490 PYALGLCQNLAAAFWRCMNT---AEADED-ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 565 (946)
Q Consensus 490 p~~~~l~~~L~~~~~~~~~~---~~~d~~-~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~ 565 (946)
||+..+.++-+..+.++.+. ...++. +..++.. ..-.++.++.+.++++.+-+-+. ..+.++.++..|++....
T Consensus 599 P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdf-iI~sLDL~SGLaegLg~~ie~Lv-a~snl~~lll~C~~D~~p 676 (885)
T KOG2023|consen 599 PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDF-IIVSLDLLSGLAEGLGSHIEPLV-AQSNLLDLLLQCLQDEVP 676 (885)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcce-EEEeHHHHhHHHHHhhhchHHHh-hhccHHHHHHHHhccCCh
Confidence 99999988877666544321 111221 1224432 22346777788888765422111 124588899999999999
Q ss_pred hHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHH---HH-HHhcCcccccccCCCchHHHHHH
Q 002257 566 EVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPL---DN-YISRGTAHFLTCKEPDYQQSLWS 640 (946)
Q Consensus 566 ~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L---~~-~i~~~~~~~l~~~~~~~~~~i~~ 640 (946)
+..+.+|.|++.+++++ ..+-|.+-.++|.+...+. .++++.+-.++ .- .++.|.+ ..+|+..++.
T Consensus 677 eVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~---~~~isv~nNA~WAiGeia~k~g~~------~~~~v~~vl~ 747 (885)
T KOG2023|consen 677 EVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLN---PENISVCNNAIWAIGEIALKMGLK------MKQYVSPVLE 747 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCC---hhhchHHHHHHHHHHHHHHHhchh------hhhHHHHHHH
Confidence 99999999999999886 5777888888888775443 23333322221 11 1233322 2256666666
Q ss_pred HHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHH
Q 002257 641 MVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLS 718 (946)
Q Consensus 641 i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~~l~ 718 (946)
-+-..++.++..-.-..+.+-.++.+...+|..++|+++.+++.+|.++.+-....-+.+...-++..+..||..+..
T Consensus 748 ~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~ 825 (885)
T KOG2023|consen 748 DLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVS 825 (885)
T ss_pred HHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhh
Confidence 555555544443333445667788888889999999999999999999987333333344444566677778886653
No 15
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.9e-08 Score=115.16 Aligned_cols=565 Identities=14% Similarity=0.182 Sum_probs=315.2
Q ss_pred hhhHHHHHh--c-CChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--h-H---HHHHHHHHHH---HHhcc-c
Q 002257 3 RDHILVFVA--Q-VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--Q-V---YGALFVLRIL---SRKYE-F 69 (946)
Q Consensus 3 r~~Ll~~l~--~-~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~-~---~~~L~~L~~i---~k~~~-~ 69 (946)
|..++..+. . .++.|-+.++.+++..+-+--|++||+-+.+++..++.+ . + ..+..+|..+ -..++ .
T Consensus 85 ~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q~~ 164 (982)
T KOG2022|consen 85 KLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQHV 164 (982)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhhhc
Confidence 445555553 2 345566666666666666677999999999999999875 1 1 2233333332 22222 1
Q ss_pred CCCcCc-chHHHHHHHHhHHHHHHHHHHhhccCCCh---hHHHHHHHHHHHhHHHHh-hhhhhhcCChhhHHHHHHHHHH
Q 002257 70 KSDEER-TPVYRIVEETFHHLLNIFNRLVQIVNPSL---EVADLIKLICKIFWSSIY-LEIPKQLLDPNVFNAWMILFLN 144 (946)
Q Consensus 70 ~~~~~~-~~l~~i~~~~~p~L~~i~~~l~~~~~~~~---~~~~~~~~~lki~~~~~~-~~lp~~~~~~~~l~~w~~~~~~ 144 (946)
++.-.| ..+..=+..+......++...+....++. ...-....++||+..-+. .++| ...+..|.+..+.
T Consensus 165 ~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~-----~~~c~~i~~~ll~ 239 (982)
T KOG2022|consen 165 TLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLT-----GMDCDQITQVLLD 239 (982)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccc-----cccHHHHHHHHHH
Confidence 111111 11111122222223334455544432221 122334567777776554 2444 2346666666666
Q ss_pred HhcCCCC----CC---------CCCCCh------------hhh---hhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhH
Q 002257 145 VLERPVP----SE---------GEPADP------------EQR---KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENR 196 (946)
Q Consensus 145 il~~~~~----~~---------~~~~d~------------~~~---~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~ 196 (946)
++....- +. ...+|+ ..+ ...-.|++-.|.+.-.++.....-+++..++.-.
T Consensus 240 ~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i~ 319 (982)
T KOG2022|consen 240 VLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEIV 319 (982)
T ss_pred HHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 6552110 00 000110 000 0112344455555555544444334432223322
Q ss_pred HHHH---HHHHhhHHHHHHHH------------HHHHHhh---hCCcccCHHHHHHHHHHHHhhcc--------Cchhh-
Q 002257 197 AFAQ---MFQKNYAGKILECH------------LNLLNRI---RVGGYLPDRVTNLILQYLSNSIS--------KNSMY- 249 (946)
Q Consensus 197 ~f~~---~f~~~~~~~~l~~~------------~~~l~~~---~~~~~~~d~~~~~~l~fl~~~~~--------~~~~~- 249 (946)
.|.. .+..+++|.+++.. .+.+... .+...+.+.+=.-.+.||.+... ....+
T Consensus 320 ~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~ 399 (982)
T KOG2022|consen 320 TFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKK 399 (982)
T ss_pred HHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 3332 23445666655554 1111111 11222333444455667655421 00011
Q ss_pred hhc-hhhHHHHHHHHHhcccc-cChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 002257 250 NLL-QPRLDVLLFEIVFPLMC-FNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIV 327 (946)
Q Consensus 250 ~~l-~~~l~~li~~ii~p~l~-lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~ 327 (946)
..+ ++....+++..+ |-+. .+++..-.|+.|-.| .+.+-|..-.+++...-+-.|+..+..+..-+.
T Consensus 400 ~i~~~qIy~qlvei~l-~K~~~Ps~e~~~~W~S~s~e----------~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~ 468 (982)
T KOG2022|consen 400 QILSQQIYAQLVEILL-KKLALPSKEIWLSWSSDSRE----------QFESYRKDISDLLMSSYSILGDGLLDFLIDTLE 468 (982)
T ss_pred hHHHHHHHHHHHHHHH-HHhcCCCHHHhccCCcchHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 122 355667777655 5444 455666778776432 345568888888887777677766655555555
Q ss_pred HhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC--CCccchhHHHHHHHHhhhcccc
Q 002257 328 GIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS--SPVGHLRAKAAWVAGQYAHINF 405 (946)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~--~~~~~lr~ra~~~l~~~~~~~f 405 (946)
+++......| +.|..-|++++.+-++++.+.... ...+...|. +.+..+ ..+|-+-+.+...+|-++.+.-
T Consensus 469 q~~aa~d~~p---~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~--~~asik~S~~n~ql~~Tss~~igs~s~~l~ 541 (982)
T KOG2022|consen 469 QALAAGDEDP---DSLNRTEACIFQFQSVAEYLGETE--STWIPRLFE--TSASIKLSAPNPQLLSTSSDLIGSLSNWLG 541 (982)
T ss_pred HhhhccCCCc---hHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHH--hccccccccCChhHHHHHHHHHHHHHHHHh
Confidence 6655543333 479999999999999999987532 123333332 223333 2477788888899999987544
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh-----hhhhhHHHHHHHH
Q 002257 406 SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE-----VENEDLVFTLETI 480 (946)
Q Consensus 406 ~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~-----~~~e~l~~~L~~i 480 (946)
..|..+...++.+++.|..+. -..+|...|+.+|+.+ ++.+.||+.+++..+-..++. .+..-++.++.-+
T Consensus 542 e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C--~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyv 617 (982)
T KOG2022|consen 542 EHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETC--PESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYV 617 (982)
T ss_pred cCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhh--hhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHH
Confidence 455778889999999996433 3456778899999994 799999999999999888876 2334477777777
Q ss_pred HHhhC-CcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcC-C-------h---------
Q 002257 481 VDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-L-------P--------- 542 (946)
Q Consensus 481 v~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~-~-------~--------- 542 (946)
+.+.. |++..|...++..+...+......+.+++ ++.....-.+.+++++..++.. . |
T Consensus 618 ls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~----e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq 693 (982)
T KOG2022|consen 618 LSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQ----ENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQ 693 (982)
T ss_pred HHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHHHHHHhccCCCCccccccchhhhcccccc
Confidence 77765 55556777887777766666554433344 4555555678888899888731 1 1
Q ss_pred hHHHHHHhhHHHHHHHhcccc--hhhHHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHH
Q 002257 543 HLFVQIEPTLLPIMRRMLTTD--GQEVFEEVLEIVSYMTFF-SPTIS-LEMWSLWPLMME 598 (946)
Q Consensus 543 ~~~~~l~~~l~p~i~~~l~~~--~~~~~~~~l~ll~~l~~~-~~~i~-p~l~~l~~~l~~ 598 (946)
....++.+.++|++..+++.- ..++.+-++.+...=+.. .++++ |.+.++++.+.+
T Consensus 694 ~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r 753 (982)
T KOG2022|consen 694 FPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR 753 (982)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH
Confidence 133456678899999887642 235555554443332222 24553 444577776654
No 16
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.1e-07 Score=110.70 Aligned_cols=314 Identities=16% Similarity=0.227 Sum_probs=153.8
Q ss_pred hhHHHHHh---cCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh------hHHHHHHHHHHHHHhcccC-CCc
Q 002257 4 DHILVFVA---QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ------QVYGALFVLRILSRKYEFK-SDE 73 (946)
Q Consensus 4 ~~Ll~~l~---~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~------~~~~~L~~L~~i~k~~~~~-~~~ 73 (946)
+.+++++. .+++.+|+..-.-+..+-+ =|..++.+.+.+.++ +.-+++..=+.|.|.|+.+ .++
T Consensus 4 ~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g 77 (1010)
T KOG1991|consen 4 QSLLQIFRATIDSDAKERKAAEQQLNQLEK------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPG 77 (1010)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhhc------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCC
Confidence 45566653 5678888877666665543 467888888888776 4568888888999987743 111
Q ss_pred ----Ccc-hHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHH-HHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhc
Q 002257 74 ----ERT-PVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKL-ICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE 147 (946)
Q Consensus 74 ----~~~-~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~-~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~ 147 (946)
-.. .=..+-.++.+. +++. .++.|. .--|++.++..+.|+.. +.+-+|.. ..++
T Consensus 78 ~~~~I~e~dk~~irenIl~~-------iv~~-------p~~iRvql~~~l~~Ii~~D~p~~W---p~l~d~i~---~~Lq 137 (1010)
T KOG1991|consen 78 RPFGIPEEDKAVIRENILET-------IVQV-------PELIRVQLTACLNTIIKADYPEQW---PGLLDKIK---NLLQ 137 (1010)
T ss_pred CcCCCChHHHHHHHHHHHHH-------HHhC-------chHHHHHHHHHHHHHHhcCCcccc---hhHHHHHH---HHhc
Confidence 000 111222333332 2221 122222 22244455566777433 13334433 3333
Q ss_pred CCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCccc
Q 002257 148 RPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYL 227 (946)
Q Consensus 148 ~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~ 227 (946)
.+ +. ..---++-++..++..|-..+ .++..+.... +..+.|.+++.+.+++... .+-
T Consensus 138 s~--------~~---------~~vy~aLl~l~qL~k~ye~k~--~eeR~~l~~~-v~~~fP~il~~~~~ll~~~---s~~ 194 (1010)
T KOG1991|consen 138 SQ--------DA---------NHVYGALLCLYQLFKTYEWKK--DEERQPLGEA-VEELFPDILQIFNGLLSQE---SYQ 194 (1010)
T ss_pred Cc--------ch---------hhHHHHHHHHHHHHHHHhhcc--ccccccHHHH-HHHHHHHHHHHHHhhcccc---chH
Confidence 31 11 111235566777777763222 2233334443 3667788888888887552 233
Q ss_pred CHHHHHHHHHHHHhhccCchhhhhchhh----HHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHH
Q 002257 228 PDRVTNLILQYLSNSISKNSMYNLLQPR----LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTAS 303 (946)
Q Consensus 228 ~d~~~~~~l~fl~~~~~~~~~~~~l~~~----l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa 303 (946)
+-.+....+..+.+++-..--..++.+. -..++..++ .-....+. ...||+. |.. . -+|-.++-|
T Consensus 195 s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~--~rpvP~E~---l~~d~e~--R~~-~---~wwK~KKWa 263 (1010)
T KOG1991|consen 195 SVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL--NRPVPVEV---LSLDPED--RSS-W---PWWKCKKWA 263 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH--cCCCChhc---ccCChhh--ccc-c---cchhhHHHH
Confidence 3345555555444443222111222221 123333333 11122232 2346653 322 2 247778888
Q ss_pred HHHHHHHHHhcCcccH-----------------HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCC--
Q 002257 304 MDFVSELVRKRGKENL-----------------QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-- 364 (946)
Q Consensus 304 ~~ll~~l~~~~~~~~l-----------------~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~-- 364 (946)
...+-.++++||+... +.+++.....++++.+ +-|..-+.-++++.-+........
T Consensus 264 ~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~-----~~yls~rvl~~~l~fl~~~Vs~~~tw 338 (1010)
T KOG1991|consen 264 LHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ-----QLYLSDRVLYYLLNFLEQCVSHASTW 338 (1010)
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCHHHHHHHHHHHHHhccHHHHH
Confidence 8888888888865321 1122222222232211 134444555555544444433211
Q ss_pred -cchHHHHHHHHHhcccCC
Q 002257 365 -PYKSELERMLVQHVFPEF 382 (946)
Q Consensus 365 -~~~~~l~~~l~~~v~p~l 382 (946)
-+.+++.-++..+|+|.+
T Consensus 339 kll~PHl~~ii~~vIFPlm 357 (1010)
T KOG1991|consen 339 KLLKPHLQVIIQDVIFPLM 357 (1010)
T ss_pred HHhhhHHHHHHHHhhhhhc
Confidence 134466666777777765
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.5e-06 Score=95.61 Aligned_cols=451 Identities=13% Similarity=0.191 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhH------hhhhcChHHHH--HhhccccccccCHH
Q 002257 229 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQ------KLWDEDPHEYV--RKGYDIIEDLYSPR 300 (946)
Q Consensus 229 d~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~------e~we~Dp~efi--~~~~d~~~d~~s~R 300 (946)
.++...++.-|..++. -.|+.+++.+.+-+..+-+.-|. +++|. |-|..==+|-+ ..+..+.-+.+.+
T Consensus 231 ~~i~~aa~~ClvkIm~--LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~- 306 (859)
T KOG1241|consen 231 EEIQVAAFQCLVKIMS--LYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP- 306 (859)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-
Confidence 3566666666666542 35666777666544433334444 44432 55553111111 1111111122333
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhccc
Q 002257 301 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP 380 (946)
Q Consensus 301 ~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p 380 (946)
++ +.+|.+..++.+.+.+.+.|.+...++.+ ++|..--||=..++..+.-+.+ +++.++-+|+.++
T Consensus 307 p~--------~~~fa~~a~~~v~P~Ll~~L~kqde~~d~-DdWnp~kAAg~CL~l~A~~~~D--~Iv~~Vl~Fiee~--- 372 (859)
T KOG1241|consen 307 PS--------SKYFARQALQDVVPVLLELLTKQDEDDDD-DDWNPAKAAGVCLMLFAQCVGD--DIVPHVLPFIEEN--- 372 (859)
T ss_pred ch--------hhHHHHHHHhHhhHHHHHHHHhCCCCccc-ccCcHHHHHHHHHHHHHHHhcc--cchhhhHHHHHHh---
Confidence 21 12333455556667667777764444433 4687776666666666665544 2344554555544
Q ss_pred CCCCCccchhHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc--ccch
Q 002257 381 EFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI--RPIL 454 (946)
Q Consensus 381 ~l~~~~~~lr~ra~~~l~~~~~~~f~~~----~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l--~p~l 454 (946)
+++|+-.=|-.|...+|..-+.. .+ ....+.++.+++.+.|+.+-|+-+|+.++.++++... +.+ ..++
T Consensus 373 -i~~pdwr~reaavmAFGSIl~gp--~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l 447 (859)
T KOG1241|consen 373 -IQNPDWRNREAAVMAFGSILEGP--EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELL 447 (859)
T ss_pred -cCCcchhhhhHHHHHHHhhhcCC--chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhh
Confidence 45666666777777777664321 22 4567888999999999999999999999999999853 222 2356
Q ss_pred HHHHHHHHHHHhhhhh--hhHHHHHHHHHHhh---------CCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 002257 455 PQLLDEFFKLMNEVEN--EDLVFTLETIVDKF---------GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALA 523 (946)
Q Consensus 455 ~~il~~Ll~ll~~~~~--e~l~~~L~~iv~~~---------~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~ 523 (946)
+++++.|+.-++.-.. ....-++..+++.+ .+-..||...|+..|... -... +......
T Consensus 448 ~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~----tdr~------dgnqsNL 517 (859)
T KOG1241|consen 448 QSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV----TDRA------DGNQSNL 517 (859)
T ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh----cccc------ccchhhH
Confidence 6666666666654221 11223333444332 123557888888777632 2111 1122345
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHH----HHhcccc-----hh----hHHHHHHHHHHHHHhcC-CCCCHHH
Q 002257 524 AVGCLRAISTILESVSRLPHLFVQIEPTLLPIM----RRMLTTD-----GQ----EVFEEVLEIVSYMTFFS-PTISLEM 589 (946)
Q Consensus 524 ~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i----~~~l~~~-----~~----~~~~~~l~ll~~l~~~~-~~i~p~l 589 (946)
+....+++.++|+...+ +++.. ...+.+++ ..+++.+ .- ++-.-....+.++++.. +.+.+.-
T Consensus 518 R~AAYeALmElIk~st~--~vy~~-v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~ 594 (859)
T KOG1241|consen 518 RSAAYEALMELIKNSTD--DVYPM-VQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVS 594 (859)
T ss_pred HHHHHHHHHHHHHcCcH--HHHHH-HHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHH
Confidence 77889999999987432 22222 22233332 3333311 11 12122233344444433 2333333
Q ss_pred HHHHHHHHHHHhhhHhhhH-hhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHH
Q 002257 590 WSLWPLMMEALADWAIDFF-PNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQ 668 (946)
Q Consensus 590 ~~l~~~l~~~~~~~~~~~l-~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~ 668 (946)
-++...++..+++-.+..+ ++.+-.+...+..-...|. .|+..+...+.+-|.+- .+-.....+..+++.+.+
T Consensus 595 d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~-----kym~~f~pyL~~gL~n~-~e~qVc~~aVglVgdl~r 668 (859)
T KOG1241|consen 595 DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA-----KYMPAFKPYLLMGLSNF-QEYQVCAAAVGLVGDLAR 668 (859)
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH-----HHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHH
Confidence 3444444555443111211 2222223232222223355 57777766666666321 222334567789999999
Q ss_pred HcccCchhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 002257 669 NCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILH 721 (946)
Q Consensus 669 ~~~~~~~~~l~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~ 721 (946)
.++..+.||-..+++.+++.|++ ...+.++..++.+|..+...=...|..+|+
T Consensus 669 aL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~ 722 (859)
T KOG1241|consen 669 ALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLE 722 (859)
T ss_pred HHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999988 556778888888877765543444444554
No 18
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.05 E-value=1.9e-05 Score=87.50 Aligned_cols=191 Identities=13% Similarity=0.169 Sum_probs=111.7
Q ss_pred HhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCc
Q 002257 264 VFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPY 343 (946)
Q Consensus 264 i~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~ 343 (946)
++.+|. ++++.-.-++|..|-||+..... |.-..-++-..+|..|..-.-..+- .+....+..-.. +..=+|
T Consensus 426 lienMv-rPEEVliVendegEivRefvket-DtI~lYksmRevLvyLthL~v~Dte----~~mi~Klarq~d--g~EWsw 497 (1053)
T COG5101 426 LIENMV-RPEEVLIVENDEGEIVREFVKET-DTIELYKSMREVLVYLTHLIVDDTE----KYMIGKLARQLD--GKEWSW 497 (1053)
T ss_pred HHHcCC-CcceEEEEECCCcHHHHHHhccc-cHhHHHHHHhhHHHHHhhhhhhhHH----HHHHHHHHHHhc--CCccch
Confidence 335554 55655566777777777655332 3333444444555555443212111 111233322111 111148
Q ss_pred hhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhccc--------CCCCCccchhHHHHHHHHhhhccccCChhHHHHHH
Q 002257 344 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP--------EFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKAL 415 (946)
Q Consensus 344 ~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p--------~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~ 415 (946)
.....-..|+|+++..+.+.+.- .|+.+.+.- ..+++...+-+....++|||-...-..-..+..++
T Consensus 498 ~nlNtLcWAIGSISGamsE~~Ek-----rF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv 572 (1053)
T COG5101 498 NNLNTLCWAIGSISGAMSEVNEK-----RFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVV 572 (1053)
T ss_pred hhHhHHHHHHhcccchhhhHHHH-----HHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHH
Confidence 99999999999999988763221 223332222 22356677888888999999652100114677788
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcc------cccccccchHHHHHHHHHHHhh
Q 002257 416 HSVVSGLRDPELPVRVDSVFALRSFVEACR------DLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 416 ~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~------~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
.-+...|...+--|+-.||.++-.+.+.+. ....-.|++..|+..|-+.-..
T Consensus 573 ~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~d 630 (1053)
T COG5101 573 KKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGD 630 (1053)
T ss_pred HHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhccc
Confidence 888888876677899999999999888764 2223357777777777655443
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.97 E-value=0.00017 Score=83.95 Aligned_cols=545 Identities=14% Similarity=0.177 Sum_probs=309.9
Q ss_pred hHHHHHhcCChhHHHHH-HHHHHHHHhhcC---CCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcch
Q 002257 5 HILVFVAQVPPLLRVQL-GECLKTIIHADY---PEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTP 77 (946)
Q Consensus 5 ~Ll~~l~~~~~~ir~ql-~~~is~Ia~~D~---P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~ 77 (946)
+|++-|.++++-+|=.. ....+.+=+--+ -+.-+.++.-|+++|... .+.-|..|+.-++.+.. ...
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk------e~~ 82 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK------EDQ 82 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch------HHH
Confidence 56777778888887443 233333322111 156688999999999754 55789999998887632 235
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhc---CChhhHHHHHHHHHHHhcCCCCCCC
Q 002257 78 VYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQL---LDPNVFNAWMILFLNVLERPVPSEG 154 (946)
Q Consensus 78 l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~---~~~~~l~~w~~~~~~il~~~~~~~~ 154 (946)
+..+++.+.+.++. . ..+.-.+..+.+|.. ..++|++. .....+..+.+.+...+..+
T Consensus 83 le~~ve~L~~~~~s---~-------keq~rdissi~Lktv----i~nl~P~~~~~la~tV~~~~t~~l~~~i~~q----- 143 (1233)
T KOG1824|consen 83 LETIVENLCSNMLS---G-------KEQLRDISSIGLKTV----IANLPPSSSSFLAATVCKRITPKLKQAISKQ----- 143 (1233)
T ss_pred HHHHHHHHhhhhcc---c-------hhhhccHHHHHHHHH----HhcCCCccccccccHHHHHHHHHHHHHhhhc-----
Confidence 66777777665322 1 011223344455543 23456421 12335566666666666542
Q ss_pred CCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHH
Q 002257 155 EPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNL 234 (946)
Q Consensus 155 ~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~ 234 (946)
++. ..+|-.+++++..+..|||. ++.+|-..++...+-.+... ...++..
T Consensus 144 --e~~--------sai~~e~lDil~d~lsr~g~--------------ll~~fh~~il~~l~~ql~s~------R~aVrKk 193 (1233)
T KOG1824|consen 144 --EDV--------SAIKCEVLDILADVLSRFGT--------------LLPNFHLSILKCLLPQLQSP------RLAVRKK 193 (1233)
T ss_pred --ccc--------hhhHHHHHHHHHHHHHhhcc--------------cCcchHHHHHHHHhhcccCh------HHHHHHH
Confidence 111 35778899999999999985 33334444555443333221 1233333
Q ss_pred H---HHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHH
Q 002257 235 I---LQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELV 311 (946)
Q Consensus 235 ~---l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~ 311 (946)
+ +..+...+... -+..++.++. ..+.-+ ..-+.-+.-..+|.+++
T Consensus 194 ai~~l~~la~~~~~~--------ly~~li~~Ll-~~L~~~-----------------------~q~~~~rt~Iq~l~~i~ 241 (1233)
T KOG1824|consen 194 AITALGHLASSCNRD--------LYVELIEHLL-KGLSNR-----------------------TQMSATRTYIQCLAAIC 241 (1233)
T ss_pred HHHHHHHHHHhcCHH--------HHHHHHHHHH-hccCCC-----------------------CchHHHHHHHHHHHHHH
Confidence 3 33444333221 1233444433 222111 00111122355566665
Q ss_pred HhcC---cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-CCcchHHHHHHHHHhcccC--CCC-
Q 002257 312 RKRG---KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPE--FSS- 384 (946)
Q Consensus 312 ~~~~---~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-~~~~~~~l~~~l~~~v~p~--l~~- 384 (946)
..-| ...++.+.+++.++.+....+ +--.||.++-+++++-.++.+ ..++.+.+-+.+.+++--+ +++
T Consensus 242 r~ag~r~~~h~~~ivp~v~~y~~~~e~~-----dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd 316 (1233)
T KOG1824|consen 242 RQAGHRFGSHLDKIVPLVADYCNKIEED-----DDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD 316 (1233)
T ss_pred HHhcchhhcccchhhHHHHHHhcccccC-----cHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC
Confidence 5332 344555565555555443222 347899999999999998764 4556556655565555432 210
Q ss_pred ----------------C-----------ccchhHHHHHHHHhhhccccCChhHHHHHH----HHHHhcCCCCCCchHHHH
Q 002257 385 ----------------P-----------VGHLRAKAAWVAGQYAHINFSDQNNFRKAL----HSVVSGLRDPELPVRVDS 433 (946)
Q Consensus 385 ----------------~-----------~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~----~~l~~~L~d~~~~V~~~A 433 (946)
. .=.+|+.|.+|+.-... ...|++..++ +.++..+++.+--|+.-.
T Consensus 317 ~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is---SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 317 TEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS---SRLEMLPDFYQTLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh---ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHH
Confidence 0 13588888888866532 1235555555 445666666666677777
Q ss_pred HHHHHHHHHhcc----------------cc---cccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhCCccccc
Q 002257 434 VFALRSFVEACR----------------DL---NEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPY 491 (946)
Q Consensus 434 a~Al~~~~~~~~----------------~~---~~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~~~i~p~ 491 (946)
..+...++.+-. .+ ..++...+-|++.+-+-+.+-..-+ -...|..++..+.+.+.++
T Consensus 394 f~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~ 473 (1233)
T KOG1824|consen 394 FHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQH 473 (1233)
T ss_pred HHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhc
Confidence 777766665421 11 3344455556666665555322223 2345566677777777777
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhh-cCChhHHHHHHhhHHHHHHHhcccchhhHHHH
Q 002257 492 ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV-SRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEE 570 (946)
Q Consensus 492 ~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~-~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~ 570 (946)
...+++.+.-.+ + |++.......+.+.-+..++ ...|+.+.++.+.+.|++..+..++-.-...|
T Consensus 474 ~~slvpgI~~~l---------~-----DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaE 539 (1233)
T KOG1824|consen 474 IPSLVPGIIYSL---------N-----DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAE 539 (1233)
T ss_pred ccccchhhhhhc---------C-----CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHH
Confidence 777766554211 1 22222333444454444444 34677888888899999988887765555567
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCC
Q 002257 571 VLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKN 650 (946)
Q Consensus 571 ~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~ 650 (946)
++-....+++...+..|.+ .| ...+|+..++....+.+....
T Consensus 540 AL~v~~~lvkvirpl~~~~-----------------------------------~~---d~~~~v~~m~~~tl~rL~a~d 581 (1233)
T KOG1824|consen 540 ALLVCQQLVKVIRPLQPPS-----------------------------------SF---DASPYVKTMYDCTLQRLKATD 581 (1233)
T ss_pred HHHHHHHHHHHhcccCCCc-----------------------------------cC---CCChhHHHHHHHHHHHHhccc
Confidence 7777666665443333211 01 112556666665444444444
Q ss_pred CCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhH
Q 002257 651 LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSY 696 (946)
Q Consensus 651 ~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~ 696 (946)
.+-..+..|..+++.++-++++.....+|.++..++.||++..+..
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl 627 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRL 627 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHH
Confidence 4555677899999999999998888899999999999998854443
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.95 E-value=0.0002 Score=83.34 Aligned_cols=484 Identities=13% Similarity=0.156 Sum_probs=271.3
Q ss_pred hcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh----hHHHHHHHHHHHHHhcccCCCcCcchHHHHHHHHh
Q 002257 11 AQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETF 86 (946)
Q Consensus 11 ~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~ 86 (946)
.++-..||+....+++.++.+=--+-+-+++..|..-|.+. .++.-.+||..|++.-..|. ..-+..+.
T Consensus 184 ~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~-------~~h~~~iv 256 (1233)
T KOG1824|consen 184 QSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRF-------GSHLDKIV 256 (1233)
T ss_pred cChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchh-------hcccchhh
Confidence 34556799999999999998743366777888888877665 56888999999999744332 23334456
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCC-CCCCh------
Q 002257 87 HHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEG-EPADP------ 159 (946)
Q Consensus 87 p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~-~~~d~------ 159 (946)
|.+.+..+.. + ....+++-.++..+..+... -|... -.+.++..++....+.++..-.. ..+|+
T Consensus 257 p~v~~y~~~~-e-----~~dDELrE~~lQale~fl~r-cp~ei--~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~e 327 (1233)
T KOG1824|consen 257 PLVADYCNKI-E-----EDDDELREYCLQALESFLRR-CPKEI--LPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLE 327 (1233)
T ss_pred HHHHHHhccc-c-----cCcHHHHHHHHHHHHHHHHh-Chhhh--cccchHHHHHHHHHhccCCCCCCCCccchhhhhhh
Confidence 6555544432 1 11335566666666655433 35444 23566777778888877532110 00010
Q ss_pred ----hh------hhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHH-Hhhh-CCccc
Q 002257 160 ----EQ------RKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLL-NRIR-VGGYL 227 (946)
Q Consensus 160 ----~~------~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l-~~~~-~~~~~ 227 (946)
++ -+..--||+|+.+.+++..++.. . ..++|.|.+..-.-+ .... +...+
T Consensus 328 d~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS--R----------------~E~L~~~~q~l~p~lI~RfkEREEnV 389 (1233)
T KOG1824|consen 328 DEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS--R----------------LEMLPDFYQTLGPALISRFKEREENV 389 (1233)
T ss_pred ccccchhccccccccchhHHHHHHHHHHHHHHHhc--c----------------HHHHHHHHHHhCHHHHHHHHHHhhhH
Confidence 00 01223499999999999887753 1 123333333322211 1111 00000
Q ss_pred CHHHHHHHHHHHHhhc---------------cCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccc
Q 002257 228 PDRVTNLILQYLSNSI---------------SKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDI 292 (946)
Q Consensus 228 ~d~~~~~~l~fl~~~~---------------~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~ 292 (946)
--.++.--+..+.+.- ..+.....++...+.|+.. |-+. +|
T Consensus 390 k~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVka-i~~q------------------lr----- 445 (1233)
T KOG1824|consen 390 KADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKA-IQKQ------------------LR----- 445 (1233)
T ss_pred HHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHH-HHHH------------------Hh-----
Confidence 0011111111111110 0111112223333333332 1111 11
Q ss_pred cccccCHHHHHHHHHHHHHHhcCcccHH---HHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-CCcchH
Q 002257 293 IEDLYSPRTASMDFVSELVRKRGKENLQ---KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYKS 368 (946)
Q Consensus 293 ~~d~~s~R~aa~~ll~~l~~~~~~~~l~---~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-~~~~~~ 368 (946)
+..---|.++..+|.++....++...+ .+.+-|.-.|+... ...-..+++-.+..+++...-.+ ..++
T Consensus 446 -~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkS-----sss~~ki~~L~fl~~~L~s~~p~~fhp~-- 517 (1233)
T KOG1824|consen 446 -EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKS-----SSSNLKIDALVFLYSALISHPPEVFHPH-- 517 (1233)
T ss_pred -hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCcc-----chHHHHHHHHHHHHHHHhcCChhhcccc--
Confidence 111225777888888888877653333 33333333333321 12447788887777777655222 1222
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccc--------cCChhHHHHHHHHHHhcCC--CCCCchHHHHHHHHH
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--------FSDQNNFRKALHSVVSGLR--DPELPVRVDSVFALR 438 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~--------f~~~~~~~~~~~~l~~~L~--d~~~~V~~~Aa~Al~ 438 (946)
.+-+.+-|.....++++-+-+-|..+.++|.++. |.......+++...++.|. |.|.-||..|+.|+.
T Consensus 518 --~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmg 595 (1233)
T KOG1824|consen 518 --LSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMG 595 (1233)
T ss_pred --hhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 2334444444456788888899999999987642 3333678899999999985 678889999999999
Q ss_pred HHHHhcccccccccchHHHHHHHHHHHhh-hhhhhHHHHHHHHHHh-hCCcccccHHHHHHHHHHHHHHHHhhccCCCCC
Q 002257 439 SFVEACRDLNEIRPILPQLLDEFFKLMNE-VENEDLVFTLETIVDK-FGEEMAPYALGLCQNLAAAFWRCMNTAEADEDA 516 (946)
Q Consensus 439 ~~~~~~~~~~~l~p~l~~il~~Ll~ll~~-~~~e~l~~~L~~iv~~-~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~ 516 (946)
.++-.. .+.++..++.++..++.-+++ ...-.-.+++.-|+.. ..-.+.|....+...+...+.+.
T Consensus 596 q~i~~f--gD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~---------- 663 (1233)
T KOG1824|consen 596 QIIANF--GDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKN---------- 663 (1233)
T ss_pred HHHHHH--hhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHH----------
Confidence 999884 577888888888888776643 2222234555544332 22344667777777776544442
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCC--hhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhc
Q 002257 517 DDPGALAAVGCLRAISTILESVSRL--PHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 581 (946)
Q Consensus 517 ~~~~~~~~~~~l~ti~~ll~~~~~~--~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~ 581 (946)
....+..++.++..++...+++ ++.+..+-..+.|+|... .-...+.++.++..++..
T Consensus 664 ---~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises----dlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 664 ---QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES----DLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHhc
Confidence 2234667888888998886432 233333333344444332 234567788888888754
No 21
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=8.6e-05 Score=84.29 Aligned_cols=194 Identities=15% Similarity=0.217 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHhcccccChhhHhhhhcC-hHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcc
Q 002257 254 PRLDVLLFEIVFPLMCFNDNDQKLWDED-PHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKR 332 (946)
Q Consensus 254 ~~l~~li~~ii~p~l~lt~~d~e~we~D-p~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~ 332 (946)
.++..++.. |+.-+|+.+. -.|.+| |. +|....+...|.-=-.|+++++..-+. .++..|.+.+.+
T Consensus 378 ~~l~~illa-i~kqicydem--y~nddn~tg------~EeEa~f~e~RkkLk~fqdti~~idps----l~l~~Ir~slS~ 444 (980)
T KOG2021|consen 378 VPLHKILLA-IFKQICYDEM--YFNDDNVTG------DEEEAFFEEVRKKLKNFQDTIVVIDPS----LFLNNIRQSLSA 444 (980)
T ss_pred ccHHHHHHH-HHHHHhccHH--hhcccCCCC------chHHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHH
Confidence 356666664 4466666443 345554 21 111112345677767777777765543 345566666655
Q ss_pred cCCCCcCCCCchhHhHHHHHHHHHHhhhhcC------Ccc-----hHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhh
Q 002257 333 YDETPVEYKPYRQKDGALLAIGALCDKLKQT------EPY-----KSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYA 401 (946)
Q Consensus 333 ~~~~~~~~~~~~~keaal~alg~ia~~l~~~------~~~-----~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~ 401 (946)
...+..+ .+|..-|.|++.+-.+++.+... .+. ..+++..+.+.-+ ...+|+.+.---...+-||.
T Consensus 445 al~ns~e-~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv--~~h~h~lVqLlfmE~ivRY~ 521 (980)
T KOG2021|consen 445 ALMNSKE-ESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQV--LAHDHELVQLLFMELIVRYN 521 (980)
T ss_pred HHhcCCc-chHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHccc--ccCCchHHHHHHHHHHHHHH
Confidence 4433222 38999999999999999987531 111 1233333333211 23588988888888888887
Q ss_pred ccccCC-hhHHHHHHHHHHhc--CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh
Q 002257 402 HINFSD-QNNFRKALHSVVSG--LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 466 (946)
Q Consensus 402 ~~~f~~-~~~~~~~~~~l~~~--L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~ 466 (946)
.. |.. ++..+.++.+.+.. |.+.+-.||..|..-..+|+.. .+..+.||+..+++.+-.+++
T Consensus 522 kf-f~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKl--Lkkqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 522 KF-FSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKL--LKKQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HH-HhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc
Confidence 62 322 24444455544433 4456788999999999999988 578889999999999999994
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.77 E-value=0.00071 Score=74.76 Aligned_cols=455 Identities=13% Similarity=0.141 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhH-----hhhhcChHHHHHhhccccccccCHHHHH
Q 002257 229 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQ-----KLWDEDPHEYVRKGYDIIEDLYSPRTAS 303 (946)
Q Consensus 229 d~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~-----e~we~Dp~efi~~~~d~~~d~~s~R~aa 303 (946)
..+...++-.+..++ .-.|+.+++.+++.+..+....|.-+.+++ |-|..==+|-+.-+++ +.+-|..-|
T Consensus 235 ~e~q~aafgCl~kim--~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e---~~~~pe~p~ 309 (858)
T COG5215 235 EELQHAAFGCLNKIM--MLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEME---DKYLPEVPA 309 (858)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHH---HhhcccCch
Confidence 567777776666654 235778888888887776655555443332 5553211111111111 111111111
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC
Q 002257 304 MDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS 383 (946)
Q Consensus 304 ~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~ 383 (946)
.+ ..++..--+.++|.++ +.|.+...++.+ ++|..--||=..+...+..+.+. +..++-. +|-..++
T Consensus 310 qn--~~fa~aav~dvlP~lL----~LL~~q~ed~~~-DdWn~smaA~sCLqlfaq~~gd~--i~~pVl~----FvEqni~ 376 (858)
T COG5215 310 QN--HGFARAAVADVLPELL----SLLEKQGEDYYG-DDWNPSMAASSCLQLFAQLKGDK--IMRPVLG----FVEQNIR 376 (858)
T ss_pred hh--cchHHHHHHHHHHHHH----HHHHhcCCCccc-cccchhhhHHHHHHHHHHHhhhH--hHHHHHH----HHHHhcc
Confidence 10 0000000022344444 455543344433 47877666655555555443331 1112323 4444566
Q ss_pred CCccchhHHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc--chHHHHH
Q 002257 384 SPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP--ILPQLLD 459 (946)
Q Consensus 384 ~~~~~lr~ra~~~l~~~~~~~f~~--~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p--~l~~il~ 459 (946)
+++-.=|-.|...+|..-+-.... .....+.++.+.+.+.|+.+-|+.++|.|+..+.+.- ...|.| |++...+
T Consensus 377 ~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~p~~Hl~~~vs 454 (858)
T COG5215 377 SESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIISPCGHLVLEVS 454 (858)
T ss_pred CchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcCccccccHHHH
Confidence 777777777777777763311101 1456788899999999999999999999999998873 444443 5566666
Q ss_pred HHHHHHhhhhhhh--HHHHHHHHHHhhC-------CcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHH
Q 002257 460 EFFKLMNEVENED--LVFTLETIVDKFG-------EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRA 530 (946)
Q Consensus 460 ~Ll~ll~~~~~e~--l~~~L~~iv~~~~-------~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~t 530 (946)
.++--+.....-. -.-..+.+++++. .-+.||...++..|+..-.+. .|+ . ..+.+.+++
T Consensus 455 a~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~-----~Ne----~--n~R~s~fsa 523 (858)
T COG5215 455 ASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA-----LNE----S--NLRVSLFSA 523 (858)
T ss_pred HHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh-----ccc----h--hHHHHHHHH
Confidence 5554333211111 1122333444442 335667777777776433222 122 2 346678999
Q ss_pred HHHHHHhhcC-ChhHHHHHHhhHHHHHHHhccc-------c----hhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 002257 531 ISTILESVSR-LPHLFVQIEPTLLPIMRRMLTT-------D----GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMM 597 (946)
Q Consensus 531 i~~ll~~~~~-~~~~~~~l~~~l~p~i~~~l~~-------~----~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~ 597 (946)
+++++....+ ..+....+....+--+..+++- + ..++....+-++.++++.. +.+.|.--++...++
T Consensus 524 Lgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~ 603 (858)
T COG5215 524 LGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFI 603 (858)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999987643 2233333444443333333332 2 1345555677888888765 344443333444444
Q ss_pred HHHhhhH-hhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchh
Q 002257 598 EALADWA-IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDH 676 (946)
Q Consensus 598 ~~~~~~~-~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~ 676 (946)
+.+++.. .-.++++.-.+.+....=.++|- .|++.+.-.+.+.++- .+......|..+++.+...++..+.+
T Consensus 604 r~les~~~t~~~~dV~~aIsal~~sl~e~Fe-----~y~~~fiPyl~~aln~--~d~~v~~~avglvgdlantl~~df~~ 676 (858)
T COG5215 604 RILESTKPTTAFGDVYTAISALSTSLEERFE-----QYASKFIPYLTRALNC--TDRFVLNSAVGLVGDLANTLGTDFNI 676 (858)
T ss_pred HHHhccCCchhhhHHHHHHHHHHHHHHHHHH-----HHHhhhhHHHHHHhcc--hhHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4444221 12223333333333322122343 4666666666666632 23323446788999999999989999
Q ss_pred chHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 002257 677 WVEPYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILH 721 (946)
Q Consensus 677 ~l~~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~ 721 (946)
|-..++..+.+.|++ .....++..++.+|..+...=...+..+|+
T Consensus 677 y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~ 722 (858)
T COG5215 677 YADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLD 722 (858)
T ss_pred HHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999987 667788888888887776544445556665
No 23
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.69 E-value=9.9e-08 Score=92.41 Aligned_cols=130 Identities=25% Similarity=0.421 Sum_probs=94.5
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--hHHHHHHHHHHHHHhcc-cC-C---CcCcchHHHHHHHHh
Q 002257 14 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKYE-FK-S---DEERTPVYRIVEETF 86 (946)
Q Consensus 14 ~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i~k~~~-~~-~---~~~~~~l~~i~~~~~ 86 (946)
|+.|+++++.+++.|+.+|||++||++++++++.++++ ....+|.+|..+.+.+. ++ . ...|..+...+...+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999987 67788888888888775 32 1 123457778888888
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcC
Q 002257 87 HHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLER 148 (946)
Q Consensus 87 p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~ 148 (946)
|.++.++.+.++.... ....++...+++++.+.+..--+..+.+. .+++.+..+++.
T Consensus 81 ~~i~~~l~~~l~~~~~-~~~~~~~~~~L~~l~s~i~~~~~~~i~~~----~~l~~~~~~l~~ 137 (148)
T PF08389_consen 81 PDILEILSQILSQSSS-EANEELVKAALKCLKSWISWIPIELIINS----NLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHHHCH-CCHHHHHHHHHHHHHHHTTTS-HHHHHSS----SHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHhCCHHHhccH----HHHHHHHHHcCC
Confidence 8888888887764321 11367789999999887653222333221 356666667643
No 24
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.6e-05 Score=85.44 Aligned_cols=224 Identities=14% Similarity=0.231 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHhhccC------chhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHH
Q 002257 230 RVTNLILQYLSNSISK------NSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTAS 303 (946)
Q Consensus 230 ~~~~~~l~fl~~~~~~------~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa 303 (946)
+++...+.||....+. ...+..++|+...++..+. +-.++.+ |.+..-++ .+++..-|...
T Consensus 306 evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~-~h~qlp~-~~~~l~Ee-----------~~~f~~fR~~v 372 (559)
T KOG2081|consen 306 EVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLK-RHVQLPP-DQFDLPEE-----------ESEFFEFRLKV 372 (559)
T ss_pred hhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHH-HHccCCC-ccccCccc-----------hhHHHHHHHHH
Confidence 8888899999876432 2234567899999988655 7777766 32221111 13445568888
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-CCcchHHHHHHHHHhcccCC
Q 002257 304 MDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEF 382 (946)
Q Consensus 304 ~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-~~~~~~~l~~~l~~~v~p~l 382 (946)
++++...+--.|... .+..+...+.+ | ...|..-||+++.+..++..+.- .++. +...+. .+. .+
T Consensus 373 ~dvl~Dv~~iigs~e---~lk~~~~~l~e----~--~~~We~~EAaLF~l~~~~~~~~~~e~~i---~pevl~-~i~-nl 438 (559)
T KOG2081|consen 373 GDVLKDVAFIIGSDE---CLKQMYIRLKE----N--NASWEEVEAALFILRAVAKNVSPEENTI---MPEVLK-LIC-NL 438 (559)
T ss_pred HHHHHHHHHHhCcHH---HHHHHHHHHcc----C--CCchHHHHHHHHHHHHHhccCCccccch---HHHHHH-HHh-CC
Confidence 888988887776532 23333344443 1 13799999999999999988753 3332 223232 111 12
Q ss_pred CCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 002257 383 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 462 (946)
Q Consensus 383 ~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll 462 (946)
.-+.| +|+.++..+|.|+++.=+.|+.+..+++.+...++... ....|+.|+..++..+ .....++++.+.+.+.
T Consensus 439 p~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c--~~~~~~l~~~~~~l~~ 513 (559)
T KOG2081|consen 439 PEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC--RVQMTCLIPSLLELIR 513 (559)
T ss_pred ccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHH
Confidence 22445 99999999999999764556777778888888777644 6777888888887774 4445555555555444
Q ss_pred HHHhhhhhhh---HHHHHHHHHHhhC
Q 002257 463 KLMNEVENED---LVFTLETIVDKFG 485 (946)
Q Consensus 463 ~ll~~~~~e~---l~~~L~~iv~~~~ 485 (946)
.+.+..-++. +...+..++.+..
T Consensus 514 ~l~~~~~~~e~a~l~~~~s~i~~~lp 539 (559)
T KOG2081|consen 514 SLDSTQINEEAACLLQGISLIISNLP 539 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 4443322222 3444444555443
No 25
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.27 E-value=0.014 Score=66.68 Aligned_cols=270 Identities=15% Similarity=0.209 Sum_probs=154.9
Q ss_pred chhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhc
Q 002257 252 LQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFK 331 (946)
Q Consensus 252 l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~ 331 (946)
.+|++++||..++ ..+. +-.-.+|.-|++++..++...+.---..+|.++..+|-
T Consensus 793 ~kpylpqi~stiL-~rLn------------------------nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLy 847 (1172)
T KOG0213|consen 793 VKPYLPQICSTIL-WRLN------------------------NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLY 847 (1172)
T ss_pred cccchHHHHHHHH-HHhc------------------------CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHH
Confidence 4788888888765 1111 12245788899999998876532212234555555554
Q ss_pred ccCCCCcCCCCchhHhHHHHHHHHHHhhh--hc-CCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhcc--ccC
Q 002257 332 RYDETPVEYKPYRQKDGALLAIGALCDKL--KQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI--NFS 406 (946)
Q Consensus 332 ~~~~~~~~~~~~~~keaal~alg~ia~~l--~~-~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~--~f~ 406 (946)
+|... +..-..=+.|-|+-+|...+ ++ ..|+. + +...+.|.|++.|.-++..++.++|.++.- .|-
T Consensus 848 Eylge----eypEvLgsILgAikaI~nvigm~km~pPi~----d-llPrltPILknrheKVqen~IdLvg~IadrgpE~v 918 (1172)
T KOG0213|consen 848 EYLGE----EYPEVLGSILGAIKAIVNVIGMTKMTPPIK----D-LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV 918 (1172)
T ss_pred HhcCc----ccHHHHHHHHHHHHHHHHhccccccCCChh----h-hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC
Confidence 44210 13344455666666666554 22 22332 2 235677788888888999999999999762 222
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCC
Q 002257 407 DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 486 (946)
Q Consensus 407 ~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~ 486 (946)
+.--+..+--.++..|......+|-.|..++..+... +.|+ .++..|++-++..+-. ...|-..-|...++
T Consensus 919 ~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka------IGPq--dVLatLlnnLkvqeRq-~RvcTtvaIaIVaE 989 (1172)
T KOG0213|consen 919 SAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA------IGPQ--DVLATLLNNLKVQERQ-NRVCTTVAIAIVAE 989 (1172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh------cCHH--HHHHHHHhcchHHHHH-hchhhhhhhhhhhh
Confidence 3333445555566667667788888888888876654 4453 4666665554322211 11111111233344
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhh
Q 002257 487 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQE 566 (946)
Q Consensus 487 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~ 566 (946)
...||.. ++.| +++.. -| + .....|+|.+++.+.+.+++.. ..+.-.+.|++...|.....-
T Consensus 990 ~c~pFtV--LPal-------mneYr-tP----e-~nVQnGVLkalsf~Feyigems---kdYiyav~PlleDAlmDrD~v 1051 (1172)
T KOG0213|consen 990 TCGPFTV--LPAL-------MNEYR-TP----E-ANVQNGVLKALSFMFEYIGEMS---KDYIYAVTPLLEDALMDRDLV 1051 (1172)
T ss_pred hcCchhh--hHHH-------Hhhcc-Cc----h-hHHHHhHHHHHHHHHHHHHHHh---hhHHHHhhHHHHHhhccccHH
Confidence 4455532 1112 21111 12 2 2234589999999999886432 334557889999888776555
Q ss_pred HHHHHHHHHHHHHhcC
Q 002257 567 VFEEVLEIVSYMTFFS 582 (946)
Q Consensus 567 ~~~~~l~ll~~l~~~~ 582 (946)
...-+..++..+.-+.
T Consensus 1052 hRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1052 HRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5666677776665443
No 26
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.22 E-value=0.018 Score=65.98 Aligned_cols=246 Identities=15% Similarity=0.220 Sum_probs=133.3
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh--HHHHHHHHHHhhCCcccccHHHHH
Q 002257 419 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED--LVFTLETIVDKFGEEMAPYALGLC 496 (946)
Q Consensus 419 ~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~--l~~~L~~iv~~~~~~i~p~~~~l~ 496 (946)
+.-+.|+..+-|..++.++.+++..-...+.=.-.-+.++.+++..+++.+.+. +..++..++..++..+.||.++|+
T Consensus 722 v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~ 801 (1172)
T KOG0213|consen 722 VLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQIC 801 (1172)
T ss_pred hhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHH
Confidence 333445555566666677776666543222222334567777777777755444 457888899999999999999998
Q ss_pred HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHH
Q 002257 497 QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVS 576 (946)
Q Consensus 497 ~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~ 576 (946)
..+. +++-+ +.+ .....+..++..+..++..+++. ++-..+=-++..-|..+-.+.+..++--+.
T Consensus 802 stiL---~rLnn---ksa----~vRqqaadlis~la~Vlktc~ee-----~~m~~lGvvLyEylgeeypEvLgsILgAik 866 (1172)
T KOG0213|consen 802 STIL---WRLNN---KSA----KVRQQAADLISSLAKVLKTCGEE-----KLMGHLGVVLYEYLGEEYPEVLGSILGAIK 866 (1172)
T ss_pred HHHH---HHhcC---CCh----hHHHHHHHHHHHHHHHHHhccHH-----HHHHHhhHHHHHhcCcccHHHHHHHHHHHH
Confidence 7553 33221 122 22223334445555555554321 112222233334444555666777776666
Q ss_pred HHHhcC--CCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCc
Q 002257 577 YMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG 654 (946)
Q Consensus 577 ~l~~~~--~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~ 654 (946)
++.... ....|..-.++|.|...+.+-......+++.++......|++.+-. -+.+...|+.+.-+-..+ -+
T Consensus 867 aI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a---REWMRIcfeLlelLkahk---K~ 940 (1172)
T KOG0213|consen 867 AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA---REWMRICFELLELLKAHK---KE 940 (1172)
T ss_pred HHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH---HHHHHHHHHHHHHHHHHH---HH
Confidence 665433 3455555566666666655333345556667777777788874321 134444455444332211 11
Q ss_pred ccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHh
Q 002257 655 DIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 691 (946)
Q Consensus 655 ~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~ 691 (946)
-...+...++.|....|.+ .++..++..|..
T Consensus 941 iRRaa~nTfG~IakaIGPq------dVLatLlnnLkv 971 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGPQ------DVLATLLNNLKV 971 (1172)
T ss_pred HHHHHHhhhhHHHHhcCHH------HHHHHHHhcchH
Confidence 1234555556565555543 466666666643
No 27
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.05 E-value=0.0095 Score=73.50 Aligned_cols=315 Identities=15% Similarity=0.228 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHhcC-cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhc
Q 002257 300 RTASMDFVSELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 378 (946)
Q Consensus 300 R~aa~~ll~~l~~~~~-~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v 378 (946)
+..|......++.+++ ...+.+++..|...+.+. ....|--|+.+++.+.+.=...- ...+ ++..|
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~--------~ialRtkAlKclS~ive~Dp~vL-~~~d----vq~~V 860 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGEN--------AIALRTKALKCLSMIVEADPSVL-SRPD----VQEAV 860 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCc--------hHHHHHHHHHHHHHHHhcChHhh-cCHH----HHHHH
Confidence 3344555555555542 234445555555555431 45777789999888876511100 0012 23455
Q ss_pred ccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHH
Q 002257 379 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 458 (946)
Q Consensus 379 ~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il 458 (946)
..-+.+++.-+|-.|..++|+|.- ..++...++|..+...+.|+...||-.|..-++.+|+..+ -++.+.
T Consensus 861 h~R~~DssasVREAaldLvGrfvl---~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p-------df~~i~ 930 (1692)
T KOG1020|consen 861 HGRLNDSSASVREAALDLVGRFVL---SIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP-------DFSKIV 930 (1692)
T ss_pred HHhhccchhHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC-------ChhhHH
Confidence 566778999999999999999953 2467999999999999999999999999999999988742 222233
Q ss_pred HHHHHHHhhhhhhh-------------------------------------------------HHHHHHHHHHhh-----
Q 002257 459 DEFFKLMNEVENED-------------------------------------------------LVFTLETIVDKF----- 484 (946)
Q Consensus 459 ~~Ll~ll~~~~~e~-------------------------------------------------l~~~L~~iv~~~----- 484 (946)
..+.+++.++..|. +-..+..++...
T Consensus 931 ~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~ 1010 (1692)
T KOG1020|consen 931 DMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTM 1010 (1692)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhh
Confidence 33333332221100 111122222111
Q ss_pred CCcccccHHHHHHHHHHHHHHHHhhc----cCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHH-HHHhhHHHHHHHh
Q 002257 485 GEEMAPYALGLCQNLAAAFWRCMNTA----EADEDADDPGALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRM 559 (946)
Q Consensus 485 ~~~i~p~~~~l~~~L~~~~~~~~~~~----~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~-~l~~~l~p~i~~~ 559 (946)
...+.|.+...+.+....+..+..+. +.+.+..++...-..+|+. ++.....-.|..+. .....+.|.+..-
T Consensus 1011 ~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~ls---tL~~FskirP~Llt~khv~tL~PYL~s~ 1087 (1692)
T KOG1020|consen 1011 KESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLS---TLFVFSKIRPQLLTKKHVITLQPYLTSK 1087 (1692)
T ss_pred hhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHH---HHHHHHhcCchhccHHHHHHhhhHHhcc
Confidence 23345555555544443333333211 1011111122222233444 44333334666665 6777888888765
Q ss_pred ccc-chhhHHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHH
Q 002257 560 LTT-DGQEVFEEVLEIVSYMTFFSPTISLEMW-SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQS 637 (946)
Q Consensus 560 l~~-~~~~~~~~~l~ll~~l~~~~~~i~p~l~-~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 637 (946)
-.. ....|+.++++++..++-..+.++..+. .+=..|+..+-..+...+..+++|+-+.+.+-...+ ..+..
T Consensus 1088 ~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~------~~v~~ 1161 (1692)
T KOG1020|consen 1088 ASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGA------KVVKA 1161 (1692)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccch------HHHHH
Confidence 222 3568999999999998876666776654 666677776665677778888899888776533222 45677
Q ss_pred HHHHHHHHH
Q 002257 638 LWSMVSSIM 646 (946)
Q Consensus 638 i~~i~~~ll 646 (946)
++..+-+.+
T Consensus 1162 cf~~~~k~l 1170 (1692)
T KOG1020|consen 1162 CFSCYLKLL 1170 (1692)
T ss_pred HHHHHHHHH
Confidence 777666666
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.029 Score=69.53 Aligned_cols=333 Identities=12% Similarity=0.216 Sum_probs=192.5
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCC-C---CCccchhHHHHHHHHhhhccccCC-----hhHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF-S---SPVGHLRAKAAWVAGQYAHINFSD-----QNNFR 412 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l-~---~~~~~lr~ra~~~l~~~~~~~f~~-----~~~~~ 412 (946)
.|--|-||-+.+|.++..-.+ .+++++.+ ++|-| + +|.+=++..-. +-|-... .+ .+++.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~------kl~p~l~k-LIPrLyRY~yDP~~~Vq~aM~---sIW~~Li-~D~k~~vd~y~n 1038 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGE------KLEPYLKK-LIPRLYRYQYDPDKKVQDAMT---SIWNALI-TDSKKVVDEYLN 1038 (1702)
T ss_pred hhhcccchhhchHHHHHHHHH------hhhhHHHH-hhHHHhhhccCCcHHHHHHHH---HHHHHhc-cChHHHHHHHHH
Confidence 699999999999999987533 56677755 44543 3 56666665432 2232121 12 26788
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh------hhHHHHHHHHHHhhCC
Q 002257 413 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN------EDLVFTLETIVDKFGE 486 (946)
Q Consensus 413 ~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~------e~l~~~L~~iv~~~~~ 486 (946)
.++.-++..|.+..-+||..+|.||..+++.. ..+.+...+|.+...+|+.++++.. +-...+|..++.+..+
T Consensus 1039 eIl~eLL~~lt~kewRVReasclAL~dLl~g~-~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1039 EILDELLVNLTSKEWRVREASCLALADLLQGR-PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 89999999999999999999999999999986 5778889999999999999987643 2245677777666655
Q ss_pred ccccc-HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchh
Q 002257 487 EMAPY-ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 565 (946)
Q Consensus 487 ~i~p~-~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~ 565 (946)
-..+- +.+.+..+.+ -+|.++... ..+-.+-.++.|+..+..+-+ ..+....+.+.|.+..++..-..
T Consensus 1118 ~~~~~~~~~~l~~iLP---fLl~~gims-----~v~evr~~si~tl~dl~Kssg---~~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1118 VTNGAKGKEALDIILP---FLLDEGIMS-----KVNEVRRFSIGTLMDLAKSSG---KELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred cCCcccHHHHHHHHHH---HHhccCccc-----chHHHHHHHHHHHHHHHHhch---hhhcchhhHHHHHHHHHccccch
Confidence 44332 2233333322 345433221 112233456777777777643 34555566777777766554222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHH
Q 002257 566 EVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSI 645 (946)
Q Consensus 566 ~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~l 645 (946)
-.+.| +.-....+..+ . +.... -...--..|+..++-++.+-.... ++.+...+..+
T Consensus 1187 ~vLnY-------ls~r~~~~e~e---a----lDt~R-~s~aksspmmeTi~~ci~~iD~~v--------Leelip~l~el 1243 (1702)
T KOG0915|consen 1187 QVLNY-------LSLRLINIETE---A----LDTLR-ASAAKSSPMMETINKCINYIDISV--------LEELIPRLTEL 1243 (1702)
T ss_pred HHHHH-------HHHhhhhhHHH---H----HHHHH-HhhhcCCcHHHHHHHHHHhhhHHH--------HHHHHHHHHHH
Confidence 11111 10000000000 0 00000 000000123333333343322222 23333333333
Q ss_pred HcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh-CHHHHHHHHHh
Q 002257 646 MADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYY-NSSLTLSILHK 722 (946)
Q Consensus 646 l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~-~~~~~l~~L~~ 722 (946)
+.+ .+.-.-+..+...+..+..+++..+.||...++.+++..+.+ ++...+..+-.-...++.+ .|+.+..+++.
T Consensus 1244 ~R~-sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1244 VRG-SVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred Hhc-cCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 321 122222455667888888889988999999999999998876 4445555444444444444 57777777764
No 29
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.91 E-value=0.1 Score=61.59 Aligned_cols=214 Identities=14% Similarity=0.135 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCC-CCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCC
Q 002257 348 GALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF-SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPE 426 (946)
Q Consensus 348 aal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l-~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~ 426 (946)
-++.+++-.+...... .++.+.+.+.-+..+ .+..|.+|.+||..+.-|++.+.- ....+.++.++++...+.+
T Consensus 469 Ra~~~i~~fs~~~~~~----~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl-~~~~p~ild~L~qlas~~s 543 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVIN----PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVL-LSLQPMILDGLLQLASKSS 543 (1005)
T ss_pred HHHHHHHHHHhhhccc----hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceec-cccchHHHHHHHHHccccc
Confidence 4555555444443222 233232333333333 367788999999888888763321 1467788899888887543
Q ss_pred CchHHHHHHHHHHHHHhcc-----cccccccchHHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhCCcccccHHHHHHHHH
Q 002257 427 LPVRVDSVFALRSFVEACR-----DLNEIRPILPQLLDEFFKLMNEV-ENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 500 (946)
Q Consensus 427 ~~V~~~Aa~Al~~~~~~~~-----~~~~l~p~l~~il~~Ll~ll~~~-~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~ 500 (946)
--|-.--..||+..+.... ..+.+.|. ++.-+++..+.- -.+..-.+++.+... .+.-.|+...+++.++
T Consensus 544 ~evl~llmE~Ls~vv~~dpef~as~~skI~P~---~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPsli 619 (1005)
T KOG2274|consen 544 DEVLVLLMEALSSVVKLDPEFAASMESKICPL---TINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLI 619 (1005)
T ss_pred HHHHHHHHHHHHHHhccChhhhhhhhcchhHH---HHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHH
Confidence 3333333445555554321 23344443 222222222211 011112333333331 2333455555555555
Q ss_pred HHHHHHHhhcc-CCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcc-cchhhHHHHHHHHHHHH
Q 002257 501 AAFWRCMNTAE-ADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLT-TDGQEVFEEVLEIVSYM 578 (946)
Q Consensus 501 ~~~~~~~~~~~-~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~-~~~~~~~~~~l~ll~~l 578 (946)
+ ++.... +.| ..+. ...++.|+++++.-. |.+-..+...++|.+..|+- .+..+-+.-+-+.+.++
T Consensus 620 s----il~~~~~~~~-----~~l~-~~aidvLttvvr~tp--~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 620 S----VLQLNADKAP-----AGLC-AIAIDVLTTVLRNTP--SPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRAL 687 (1005)
T ss_pred H----HHcCcccccC-----chhh-HHHHHHHHHHHhcCC--CCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence 3 333211 111 1122 234667777888642 22445566778888877753 34456777777888887
Q ss_pred HhcC
Q 002257 579 TFFS 582 (946)
Q Consensus 579 ~~~~ 582 (946)
+..+
T Consensus 688 Is~~ 691 (1005)
T KOG2274|consen 688 ISVT 691 (1005)
T ss_pred HhcC
Confidence 7653
No 30
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.1 Score=61.09 Aligned_cols=262 Identities=15% Similarity=0.136 Sum_probs=142.8
Q ss_pred ccCHHHHHHHHHHHHHHhcCc---cc-----HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcch
Q 002257 296 LYSPRTASMDFVSELVRKRGK---EN-----LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYK 367 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~~~---~~-----l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~ 367 (946)
.|.-+.+|..|+.+++-+-+. .+ +-.+..|+.+.+..+..+|+..+....|-+++--+-.....+ -.
T Consensus 419 nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql-----~~ 493 (960)
T KOG1992|consen 419 NWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL-----GK 493 (960)
T ss_pred cccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccC-----Ch
Confidence 367788888888888875211 10 112333433333333333433335555554443222221111 11
Q ss_pred HHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhcc-------ccCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q 002257 368 SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI-------NFSDQ---NNFRKALHSVVSGLRDPELPVRVDSVFAL 437 (946)
Q Consensus 368 ~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~-------~f~~~---~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al 437 (946)
..+...+ ..++..++++.+.|..=|..++-+.-.+ .|.++ .....++..++..+.-++..=-.+-..|+
T Consensus 494 ~~lm~~~-p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaI 572 (960)
T KOG1992|consen 494 EHLMALL-PRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAI 572 (960)
T ss_pred HHHHHHH-HHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHH
Confidence 2333322 3444556778888888888888776322 23333 23345666666666644444556778888
Q ss_pred HHHHHhcccccccccchHHHHHHHHHHHhhhh--------hhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhh
Q 002257 438 RSFVEACRDLNEIRPILPQLLDEFFKLMNEVE--------NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT 509 (946)
Q Consensus 438 ~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~--------~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~ 509 (946)
-+.+.. ..+.+.|+.+.++..|.+++.++. +-++.+++..++....+.=..-...+...|...|..+.++
T Consensus 573 mRii~i--~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 573 MRIISI--LQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE 650 (960)
T ss_pred HHHHHh--CHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 888888 568888999999999999887631 2345666666655544332112233445555555555542
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHHHhhcC-ChhHHHHHHhhHHHHHHHhcccchh---hHHHHHHHHHHHHHhc
Q 002257 510 AEADEDADDPGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTDGQ---EVFEEVLEIVSYMTFF 581 (946)
Q Consensus 510 ~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~-~~~~~~~l~~~l~p~i~~~l~~~~~---~~~~~~l~ll~~l~~~ 581 (946)
|-.-+.-+.++.++.+++..+. .| +...|++..+|++... .-++....|+.++++.
T Consensus 651 ---------DI~EfiPYvfQlla~lve~~~~~ip-------~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 651 ---------DIQEFIPYVFQLLAVLVEHSSGTIP-------DSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKT 710 (960)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhc
Confidence 2333455677777777776533 22 2344555555554322 2344555555555544
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.88 E-value=0.019 Score=68.23 Aligned_cols=429 Identities=16% Similarity=0.194 Sum_probs=229.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--hH-HHHHHHHHHHHHhcccCCCcCcchHHHHHH
Q 002257 7 LVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTPVYRIVE 83 (946)
Q Consensus 7 l~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~ 83 (946)
..-|.++++.+|...-.+++.|+. |+-.|.+++.+.+++.++ .+ ..|+.++..+++.+. +.+.
T Consensus 85 ~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-----------~~~~ 150 (526)
T PF01602_consen 85 QKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-----------DLVE 150 (526)
T ss_dssp HHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-----------CCHH
T ss_pred HHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-----------HHHH
Confidence 344556777888777777777764 556788999999998877 44 578889999988732 1222
Q ss_pred H-HhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhh
Q 002257 84 E-TFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQR 162 (946)
Q Consensus 84 ~-~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d~~~~ 162 (946)
. ++|.+.++ +.+. ...++..++..+..+ . .-|.... ..+......+..++..+ +
T Consensus 151 ~~~~~~l~~l----L~d~-----~~~V~~~a~~~l~~i-~-~~~~~~~--~~~~~~~~~L~~~l~~~--------~---- 205 (526)
T PF01602_consen 151 DELIPKLKQL----LSDK-----DPSVVSAALSLLSEI-K-CNDDSYK--SLIPKLIRILCQLLSDP--------D---- 205 (526)
T ss_dssp GGHHHHHHHH----TTHS-----SHHHHHHHHHHHHHH-H-CTHHHHT--THHHHHHHHHHHHHTCC--------S----
T ss_pred HHHHHHHhhh----ccCC-----cchhHHHHHHHHHHH-c-cCcchhh--hhHHHHHHHhhhccccc--------c----
Confidence 2 34444333 3221 244566666766655 1 1122211 23445555555555321 1
Q ss_pred hhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhh
Q 002257 163 KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNS 242 (946)
Q Consensus 163 ~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~ 242 (946)
| |....+-+++.+|+... +. .... ..+++.+...+.+ .+..++..++..+..+
T Consensus 206 ---~------~~q~~il~~l~~~~~~~---~~-------~~~~--~~~i~~l~~~l~s------~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 206 ---P------WLQIKILRLLRRYAPME---PE-------DADK--NRIIEPLLNLLQS------SSPSVVYEAIRLIIKL 258 (526)
T ss_dssp ---H------HHHHHHHHHHTTSTSSS---HH-------HHHH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred ---h------HHHHHHHHHHHhcccCC---hh-------hhhH--HHHHHHHHHHhhc------cccHHHHHHHHHHHHh
Confidence 1 22222333454554221 11 0000 2345555555543 2357788888887765
Q ss_pred ccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHH
Q 002257 243 ISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKF 322 (946)
Q Consensus 243 ~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~l 322 (946)
..... . +..++..++ ..+. +...+.|-.|.+.+..++...+..+. -
T Consensus 259 ~~~~~---~----~~~~~~~L~-~lL~------------------------s~~~nvr~~~L~~L~~l~~~~~~~v~--~ 304 (526)
T PF01602_consen 259 SPSPE---L----LQKAINPLI-KLLS------------------------SSDPNVRYIALDSLSQLAQSNPPAVF--N 304 (526)
T ss_dssp SSSHH---H----HHHHHHHHH-HHHT------------------------SSSHHHHHHHHHHHHHHCCHCHHHHG--T
T ss_pred hcchH---H----HHhhHHHHH-HHhh------------------------cccchhehhHHHHHHHhhcccchhhh--h
Confidence 44332 1 112222111 1111 01134677788888888776633222 1
Q ss_pred HHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC-CCccchhHHHHHHHHhhh
Q 002257 323 IQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYA 401 (946)
Q Consensus 323 l~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~ 401 (946)
.......+... ++.-.|--++.++..++..- ++... .+.+...+. .+.+-+|..++..++..+
T Consensus 305 ~~~~~~~l~~~-------~d~~Ir~~~l~lL~~l~~~~--------n~~~I-l~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 305 QSLILFFLLYD-------DDPSIRKKALDLLYKLANES--------NVKEI-LDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp HHHHHHHHHCS-------SSHHHHHHHHHHHHHH--HH--------HHHHH-HHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred hhhhhheecCC-------CChhHHHHHHHHHhhccccc--------chhhH-HHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 11122233210 14455666777777766541 11111 112222232 234558889999998887
Q ss_pred ccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 002257 402 HINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIV 481 (946)
Q Consensus 402 ~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv 481 (946)
. .| +.....+++.+++.+...+..+...++..+..++...+ + . -..++..|+..+.+...+.+..++--++
T Consensus 369 ~-~~--~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~--~-~---~~~~l~~L~~~l~~~~~~~~~~~~~wil 439 (526)
T PF01602_consen 369 E-KF--PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP--E-L---REKILKKLIELLEDISSPEALAAAIWIL 439 (526)
T ss_dssp H-HH--GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST--T-T---HHHHHHHHHHHHTSSSSHHHHHHHHHHH
T ss_pred h-cc--CchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh--h-h---hHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 6 33 33567788888888876666778888888998887631 1 1 2346788888888776666666666667
Q ss_pred HhhCCcccc--cHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHh
Q 002257 482 DKFGEEMAP--YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRM 559 (946)
Q Consensus 482 ~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~ 559 (946)
..|++.+.. .+.++...+...| . + +.......++.++..+....... +..+ .+.+.+...
T Consensus 440 GEy~~~~~~~~~~~~~~~~l~~~~----~----~-----~~~~vk~~ilt~~~Kl~~~~~~~-~~~~----~i~~~~~~~ 501 (526)
T PF01602_consen 440 GEYGELIENTESAPDILRSLIENF----I----E-----ESPEVKLQILTALAKLFKRNPEN-EVQN----EILQFLLSL 501 (526)
T ss_dssp HHHCHHHTTTTHHHHHHHHHHHHH----T----T-----SHHHHHHHHHHHHHHHHHHSCST-THHH----HHHHHHHCH
T ss_pred cccCCcccccccHHHHHHHHHHhh----c----c-----ccHHHHHHHHHHHHHHHhhCCch-hhHH----HHHHHHHHH
Confidence 777665544 5666666555332 1 1 22345566777777777653211 1222 344444444
Q ss_pred cc--cchhhHHHHHHHHHHHH
Q 002257 560 LT--TDGQEVFEEVLEIVSYM 578 (946)
Q Consensus 560 l~--~~~~~~~~~~l~ll~~l 578 (946)
.. ....+.-+-+.+.+..+
T Consensus 502 ~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 502 ATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHS-SSHHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHH
Confidence 44 34556777777766654
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.015 Score=70.42 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=135.5
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcC-CcchHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT-EPYKSELERMLV 375 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~-~~~~~~l~~~l~ 375 (946)
...|..+..++..|.+.-+.+....+...|.+++-.+ .+.+...-+.+.++|.-+|.+....... .+-...++.|+.
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~ 788 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL--KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLS 788 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc--ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHH
Confidence 3456667888888888776666666666666666554 2222223455677777777644443322 221235666664
Q ss_pred HhcccCCCCCccchhHHHHHHHHhhh-c-cccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 002257 376 QHVFPEFSSPVGHLRAKAAWVAGQYA-H-INFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 453 (946)
Q Consensus 376 ~~v~p~l~~~~~~lr~ra~~~l~~~~-~-~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~ 453 (946)
.|.+.+....+.++++.+..++... + -.+-+.+.+..+++.+..+|.+...-++..|...++.++... +...++||
T Consensus 789 -~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~-pe~~l~~~ 866 (1176)
T KOG1248|consen 789 -IISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF-PEECLSPH 866 (1176)
T ss_pred -HHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC-CHHHHhhh
Confidence 4445555566667776544444431 1 123356899999999999999988889999999999999986 57889999
Q ss_pred hHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhC-CcccccHHHHHHHH
Q 002257 454 LPQLLDEFFKLMNEVENED---LVFTLETIVDKFG-EEMAPYALGLCQNL 499 (946)
Q Consensus 454 l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~-~~i~p~~~~l~~~L 499 (946)
++.+|..++.++++..... +...++.++..|+ +++.+|+++.-.++
T Consensus 867 ~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~kl 916 (1176)
T KOG1248|consen 867 LEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKL 916 (1176)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHH
Confidence 9999999999998755444 4577899999997 56677777543333
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.75 E-value=0.013 Score=69.77 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=81.7
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHH-HHHHHHh
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRK-ALHSVVS 420 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~-~~~~l~~ 420 (946)
|...|-.|+..++.++.. ++-+-+.+.|...+.+++|++|..|+.++.++... .|+.... +++.+.+
T Consensus 92 n~~~~~lAL~~l~~i~~~---------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~~ 159 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIRTP---------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDELIPKLKQ 159 (526)
T ss_dssp SHHHHHHHHHHHHHH-SH---------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGGHHHHHHH
T ss_pred CHHHHHHHHhhhhhhccc---------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhh
Confidence 678899999999998743 33344556677778899999999999999998652 3445555 7899999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh
Q 002257 421 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 421 ~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
.|.|+++.|+..|+.++..+ .. .+....+.++.++..|.+++..
T Consensus 160 lL~d~~~~V~~~a~~~l~~i-~~--~~~~~~~~~~~~~~~L~~~l~~ 203 (526)
T PF01602_consen 160 LLSDKDPSVVSAALSLLSEI-KC--NDDSYKSLIPKLIRILCQLLSD 203 (526)
T ss_dssp HTTHSSHHHHHHHHHHHHHH-HC--THHHHTTHHHHHHHHHHHHHTC
T ss_pred hccCCcchhHHHHHHHHHHH-cc--CcchhhhhHHHHHHHhhhcccc
Confidence 99999988999999999988 22 2222236677777777776643
No 34
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.026 Score=64.16 Aligned_cols=344 Identities=13% Similarity=0.142 Sum_probs=196.6
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhh-c-CCcchHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK-Q-TEPYKSELERML 374 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~-~-~~~~~~~l~~~l 374 (946)
-+.|.+...++..+.-.....--..++..+.+.++.. ....+.++-..+..+..+.. + ..+. .|+
T Consensus 110 ~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--------~~~~~~~aa~~~ag~v~g~~i~~~~~~-----~~l 176 (569)
T KOG1242|consen 110 KSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTST--------KIAERAGAAYGLAGLVNGLGIESLKEF-----GFL 176 (569)
T ss_pred HHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccc--------cHHHHhhhhHHHHHHHcCcHHhhhhhh-----hHH
Confidence 3455666667766655543333334455555665532 33444445444444444321 1 1111 111
Q ss_pred HHhcccCCCCCccchhHH-HHHHHHhhhcc--ccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 002257 375 VQHVFPEFSSPVGHLRAK-AAWVAGQYAHI--NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 451 (946)
Q Consensus 375 ~~~v~p~l~~~~~~lr~r-a~~~l~~~~~~--~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~ 451 (946)
. .+.-..++.....++. +....-.+... .... .....+++.++.+..|....||-.|..|.+.+.+.. ....++
T Consensus 177 ~-~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~E-Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~-~~~aVK 253 (569)
T KOG1242|consen 177 D-NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFE-PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL-SAYAVK 253 (569)
T ss_pred H-HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCC-chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc-Ccchhh
Confidence 1 1111233444555553 22111111111 1212 488999999999999999999999999999888876 456677
Q ss_pred cchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHH
Q 002257 452 PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAI 531 (946)
Q Consensus 452 p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti 531 (946)
-.+++++..+... +-.+-......+..+.......+.-+++++++.+...++. .++..+-.-.++|
T Consensus 254 ~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D-------------T~~evr~a~~~~l 319 (569)
T KOG1242|consen 254 LLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD-------------TKPEVRKAGIETL 319 (569)
T ss_pred HhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc-------------CCHHHHHHHHHHH
Confidence 7777777777765 3334445566677677766676666777777777653322 2233333344444
Q ss_pred HHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhh
Q 002257 532 STILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNI 611 (946)
Q Consensus 532 ~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~ 611 (946)
..+-+.+ ++|+ .+.++|.+..++.... ...+++++.++..++..---+|.+--+-|.+.+-+...+.+.-...
T Consensus 320 ~~~~svi-dN~d-----I~~~ip~Lld~l~dp~-~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t 392 (569)
T KOG1242|consen 320 LKFGSVI-DNPD-----IQKIIPTLLDALADPS-CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKT 392 (569)
T ss_pred HHHHHhh-ccHH-----HHHHHHHHHHHhcCcc-cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhH
Confidence 4444433 3454 2467888888887643 3566777777766554322335666666777666653333333445
Q ss_pred HHHHHHHHhc--CcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccC-chhchHHHHHH
Q 002257 612 LVPLDNYISR--GTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRI 684 (946)
Q Consensus 612 ~~~L~~~i~~--~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~-~~~~l~~il~~ 684 (946)
+.++.|.... ++..+- +|+..++.-+.+.+.+. ..+.+..+.+-++.+++.++.. ++...|.+...
T Consensus 393 ~~IidNm~~LveDp~~la-----pfl~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 393 AIIIDNMCKLVEDPKDLA-----PFLPSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred HHHHHHHHHhhcCHHHHh-----hhHHHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 5566665544 343333 78888888888887655 3334667888888888888764 34444444433
No 35
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.056 Score=60.49 Aligned_cols=214 Identities=14% Similarity=0.148 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhh--hHHHHHHHHHHhhC-
Q 002257 409 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE--DLVFTLETIVDKFG- 485 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e--~l~~~L~~iv~~~~- 485 (946)
.+...+++-++.|++|++..||.+||.++.++... .+..+.+|.+.|+..|+++....+.. .-.+.+.+++.-.-
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv--~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKV--AKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHH--hccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999988 57889999999999999999775542 22334444332211
Q ss_pred Ccc-cccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChh-HHHHHHhhHHHHHHHhcccc
Q 002257 486 EEM-APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPH-LFVQIEPTLLPIMRRMLTTD 563 (946)
Q Consensus 486 ~~i-~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~-~~~~l~~~l~p~i~~~l~~~ 563 (946)
+.- +=..+.+++-|...+ . ..|| +.+..+++-|..+- + .|. -+-.+-+.+++.+-..|..+
T Consensus 158 e~~~tFsL~~~ipLL~eri---y---~~n~-------~tR~flv~Wl~~Ld-s---~P~~~m~~yl~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI---Y---VINP-------MTRQFLVSWLYVLD-S---VPDLEMISYLPSLLDGLFNMLSDS 220 (675)
T ss_pred ccccccCHHHHHHHHHHHH---h---cCCc-------hHHHHHHHHHHHHh-c---CCcHHHHhcchHHHHHHHHHhcCC
Confidence 111 112223333333211 1 1233 44555555553332 2 221 12233455667666666665
Q ss_pred hhhHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhhhHhhhHh-hhHHHHHHHHhcCcccccccCCCchHHHHHH
Q 002257 564 GQEVFEEVLEIVSYMTFF--SPTISLEMWSLWPLMMEALADWAIDFFP-NILVPLDNYISRGTAHFLTCKEPDYQQSLWS 640 (946)
Q Consensus 564 ~~~~~~~~l~ll~~l~~~--~~~i~p~l~~l~~~l~~~~~~~~~~~l~-~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~ 640 (946)
..+...-+=-+++.++.- +.+-+-.+.+..+.+....++ ....++ ..+--++-|+..++..++ .|...++.
T Consensus 221 s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~~l-----~~~s~il~ 294 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRDLL-----LYLSGILT 294 (675)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcchh-----hhhhhhhh
Confidence 444332111122222211 111111222333333333321 122332 223446667888777777 57777776
Q ss_pred HHHHHHc
Q 002257 641 MVSSIMA 647 (946)
Q Consensus 641 i~~~ll~ 647 (946)
.+-.++.
T Consensus 295 ~iLpc~s 301 (675)
T KOG0212|consen 295 AILPCLS 301 (675)
T ss_pred hcccCCC
Confidence 6655553
No 36
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.67 E-value=0.52 Score=62.45 Aligned_cols=251 Identities=12% Similarity=0.049 Sum_probs=148.2
Q ss_pred chhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHH-----HHHHHH
Q 002257 343 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKALHS 417 (946)
Q Consensus 343 ~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~-----~~~~~~ 417 (946)
-..++.+..++..++.+=.+.... -...-..+.++..|.++++-+|..|+|.++..+.- +++.. .-.++.
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~a--Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~---ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEA--LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE---VDESKWAITAAGGIPP 492 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHH--HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHH
Confidence 466777777777777541110000 00111123444456677889999999999999752 22222 346889
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH--HHHHHHHHHHhhhhhhhHHHH---HHHHHHhhCCcccccH
Q 002257 418 VVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP--QLLDEFFKLMNEVENEDLVFT---LETIVDKFGEEMAPYA 492 (946)
Q Consensus 418 l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~--~il~~Ll~ll~~~~~e~l~~~---L~~iv~~~~~~i~p~~ 492 (946)
+++.|.+++..++..|+.||.++..+. +..+..+. ..+..|+.+++..+.+....+ |..++......
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~---~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~----- 564 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHS---EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA----- 564 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----
Confidence 999999888999999999999998752 22233221 355566777766544443333 44443322221
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHH--HHhhHHHHHHHhcccchhhHHHH
Q 002257 493 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ--IEPTLLPIMRRMLTTDGQEVFEE 570 (946)
Q Consensus 493 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~--l~~~l~p~i~~~l~~~~~~~~~~ 570 (946)
.+..++ .++.. +++ .....+++++..++....... .... .....+|.+...++++.....++
T Consensus 565 --~I~~Lv----~LLls--dd~-------~~~~~aL~vLgnIlsl~~~~d-~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~ 628 (2102)
T PLN03200 565 --TISQLT----ALLLG--DLP-------ESKVHVLDVLGHVLSVASLED-LVREGSAANDALRTLIQLLSSSKEETQEK 628 (2102)
T ss_pred --HHHHHH----HHhcC--CCh-------hHHHHHHHHHHHHHhhcchhH-HHHHhhhccccHHHHHHHHcCCCHHHHHH
Confidence 223333 22221 111 122346777777777543221 1111 12347899999999888888999
Q ss_pred HHHHHHHHHhcCCCCCHHH--HHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcC
Q 002257 571 VLEIVSYMTFFSPTISLEM--WSLWPLMMEALADWAIDFFPNILVPLDNYISRG 622 (946)
Q Consensus 571 ~l~ll~~l~~~~~~i~p~l--~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~ 622 (946)
+..++..+....+.+...+ ....|+++..+...+.+.-.+....|.+....+
T Consensus 629 Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 629 AASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 9999998876554433222 267788888876544555666667777766533
No 37
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.026 Score=62.97 Aligned_cols=384 Identities=16% Similarity=0.183 Sum_probs=198.9
Q ss_pred ccCHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCC-cchHHHHHH
Q 002257 296 LYSPRTASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PYKSELERM 373 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~-~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~-~~~~~l~~~ 373 (946)
.|..|.||+--+..+++.+ ...-...+=.+|.+....|..+|.. |.++ |++.++++.+-++.... .| ++.
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~--n~rk--GgLiGlAA~~iaLg~~~~~Y---~~~- 84 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHA--NMRK--GGLIGLAAVAIALGIKDAGY---LEK- 84 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccc--cccc--chHHHHHHHHHHhccccHHH---HHH-
Confidence 4778999988888877754 2233334444555566666555532 3232 99999999888875421 22 223
Q ss_pred HHHhcccCCCCCccchhHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 002257 374 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 451 (946)
Q Consensus 374 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~ 451 (946)
+..-|++.|.++.--+|.-||.-+=..+++. +.. ..+..++..+.+...|++.-||- ++.-+.+++.+-...+.=.
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~t 162 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAST 162 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccc
Confidence 3345666778888889999998765554421 121 46788899999988899888885 5666777776642111101
Q ss_pred cchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHH
Q 002257 452 PILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 528 (946)
Q Consensus 452 p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 528 (946)
=.++.+++-|-.-+......+ +..=|..+-..=.-++..|.+.+..-|. +..+ |+ ... .+.-+=
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf----~~Ls----D~----s~e-Vr~~~~ 229 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLF----NMLS----DS----SDE-VRTLTD 229 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHH----HHhc----CC----cHH-HHHHHH
Confidence 123333333322222222222 2222222211111223334445444443 2232 22 222 222334
Q ss_pred HHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhHhhh
Q 002257 529 RAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDF 607 (946)
Q Consensus 529 ~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~~~~~~ 607 (946)
.+++..+..+.+.|..+. .....|++..-++.+....-.-++--+..+++-. +.+-+.+-.++..++.++.......
T Consensus 230 t~l~~fL~eI~s~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~ 307 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMS 307 (675)
T ss_pred HHHHHHHHHHhcCccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCcccc
Confidence 456778887776765431 1223444443344333333334444444444432 2333333444444444443211111
Q ss_pred HhhhHHHHHH-HHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHH
Q 002257 608 FPNILVPLDN-YISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITV 686 (946)
Q Consensus 608 l~~~~~~L~~-~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~ 686 (946)
+..+...+++ ..+........ +.-. ...+++++.+.+.+.. +..+..+.+-+..+..+.|+++--+..+++..++
T Consensus 308 i~~~a~~~n~~l~~l~s~~~~~-~~id-~~~ii~vl~~~l~~~~--~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL 383 (675)
T KOG0212|consen 308 IKEYAQMVNGLLLKLVSSERLK-EEID-YGSIIEVLTKYLSDDR--EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLL 383 (675)
T ss_pred HHHHHHHHHHHHHHHHhhhhhc-cccc-hHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHH
Confidence 2222222221 11111111110 0102 3567888899986552 3336778889999999999988888888888888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 002257 687 ERLRRAEKSYLKCLLVQVIADAL 709 (946)
Q Consensus 687 ~~L~~~~~~~~~~~~l~v~~~~~ 709 (946)
..|.+.... +....+++.+.+.
T Consensus 384 ~tLsd~sd~-vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 384 KTLSDRSDE-VVLLALSLLASIC 405 (675)
T ss_pred HhhcCchhH-HHHHHHHHHHHHh
Confidence 888663332 2233344444443
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.61 E-value=0.019 Score=67.13 Aligned_cols=328 Identities=13% Similarity=0.127 Sum_probs=175.9
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc-ccccccchHH
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD-LNEIRPILPQ 456 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~-~~~l~p~l~~ 456 (946)
++..|++.++=.-.-+|.++.++-+. +.......++.+.+...|.+++..||..|+.+|.+++++... .+.+. =..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~-~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~--~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSA-LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV--DNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc--Ccc
Confidence 33344433333334577777777542 223355888899999999999999999999999999887531 11111 134
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHH-HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHH
Q 002257 457 LLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 535 (946)
Q Consensus 457 il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll 535 (946)
++..++.++...+.+.-..++..+..-.+. .+....++ ..+...+..+..+ .+...++.+++.+..+.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~---------~~~~vR~Rv~el~v~i~ 188 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQ---------SSDIVRCRVYELLVEIA 188 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhc---------cCHHHHHHHHHHHHHHH
Confidence 667777777665554444444443332221 12222331 1112233344331 12345566777666664
Q ss_pred HhhcCChhHHHHHH-hhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhhHh------h
Q 002257 536 ESVSRLPHLFVQIE-PTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAI------D 606 (946)
Q Consensus 536 ~~~~~~~~~~~~l~-~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~~~------~ 606 (946)
. .+++...... .-+++.+...++++..-+--.+++++..+.. .+.-...+. .+++.+.+.+.+... -
T Consensus 189 ~---~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~ 264 (503)
T PF10508_consen 189 S---HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSL 264 (503)
T ss_pred h---cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccch
Confidence 4 3555454443 2367777777777544455689999999987 332233333 577777777653222 2
Q ss_pred hHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccC--c----hhchHH
Q 002257 607 FFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ--V----DHWVEP 680 (946)
Q Consensus 607 ~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~--~----~~~l~~ 680 (946)
+++..+....+....++..+.. ....+++.+.+++.+. +......|+..++.+.....|. + .+-+..
T Consensus 265 ~l~g~~~f~g~la~~~~~~v~~-----~~p~~~~~l~~~~~s~--d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~ 337 (503)
T PF10508_consen 265 LLPGRMKFFGNLARVSPQEVLE-----LYPAFLERLFSMLESQ--DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKH 337 (503)
T ss_pred hhhhHHHHHHHHHhcChHHHHH-----HHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHH
Confidence 4555555555555555555552 2233333334444333 3333456777777776554441 2 223333
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHH-HHHHHHHhcCchHHHHHHHHHhHH
Q 002257 681 YLRITVERLRRAEKSYLKCLLVQVIADALYYNSS-LTLSILHKLGVATEVFNLWFQMLQ 738 (946)
Q Consensus 681 il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~-~~l~~L~~~~~~~~~~~~w~~~~~ 738 (946)
+++.+..+..+ ....++...+.-+..++...+. ..-+++ .+...|++.+.
T Consensus 338 ~l~~~~~~~~~-~~~~lk~r~l~al~~il~~~~~~~~~~i~-------~~~~~w~~~~~ 388 (503)
T PF10508_consen 338 VLKAIGDAIKS-GSTELKLRALHALASILTSGTDRQDNDIL-------SITESWYESLS 388 (503)
T ss_pred HHHHHHHHhcC-CchHHHHHHHHHHHHHHhcCCCCchHHHH-------HHHHHHHHHhc
Confidence 34443333322 3345666677667766543322 111111 46677877655
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=97.53 E-value=0.26 Score=59.82 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcc
Q 002257 300 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 379 (946)
Q Consensus 300 R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~ 379 (946)
|.+-..++..+. .|..+-. ++.-+...+++ ++...|-=+|..+...+..- .++.-...+.+.
T Consensus 50 k~alKkvIa~mt--~G~DvS~-LF~dVvk~~~S--------~d~elKKLvYLYL~~ya~~~-------pelalLaINtl~ 111 (746)
T PTZ00429 50 KAAVKRIIANMT--MGRDVSY-LFVDVVKLAPS--------TDLELKKLVYLYVLSTARLQ-------PEKALLAVNTFL 111 (746)
T ss_pred HHHHHHHHHHHH--CCCCchH-HHHHHHHHhCC--------CCHHHHHHHHHHHHHHcccC-------hHHHHHHHHHHH
Confidence 443344444333 3455543 34434445543 27788888888777765431 133334456777
Q ss_pred cCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHH
Q 002257 380 PEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLD 459 (946)
Q Consensus 380 p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~ 459 (946)
.++++++|++|+-|+.++|... .++....+...+.+++.|.++-||-.|+.|+..+.... ++.+.. ..+++
T Consensus 112 KDl~d~Np~IRaLALRtLs~Ir-----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~--pelv~~--~~~~~ 182 (746)
T PTZ00429 112 QDTTNSSPVVRALAVRTMMCIR-----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD--MQLFYQ--QDFKK 182 (746)
T ss_pred HHcCCCCHHHHHHHHHHHHcCC-----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--cccccc--cchHH
Confidence 7899999999999999996653 45788889999999999999999999999999998863 333211 11334
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHh
Q 002257 460 EFFKLMNEVENEDLVFTLETIVDK 483 (946)
Q Consensus 460 ~Ll~ll~~~~~e~l~~~L~~iv~~ 483 (946)
.|..++++.+...+..++..+.+.
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHH
Confidence 444556655555555665555433
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.52 E-value=0.019 Score=67.14 Aligned_cols=203 Identities=19% Similarity=0.264 Sum_probs=118.6
Q ss_pred HHHhcccCCCCCccchhHHHHHHHHhhhccccCCh--hH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc-
Q 002257 374 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN- 448 (946)
Q Consensus 374 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~--~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~- 448 (946)
+..++...|.+++|.+|.-+|+.+++..... .. +. -..+++.++.+|.+++.-|...|+.+|..+.......+
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~--~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHS--EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC--HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 3455666778899999999999999986522 11 11 24689999999999999999999999999998753111
Q ss_pred ccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHH--HHHHHHHHHhhccCCCCCCChhhHHHHH
Q 002257 449 EIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQN--LAAAFWRCMNTAEADEDADDPGALAAVG 526 (946)
Q Consensus 449 ~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~--L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 526 (946)
.+.+.+ +..|-.++.+.....-.++++.++..++.. |.+...+.. +...+.+..+ + +-......
T Consensus 156 l~~~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~~~~~sgll~~ll~eL~----~-----dDiLvqln 221 (503)
T PF10508_consen 156 LFDSNL---LSKLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAEAVVNSGLLDLLLKELD----S-----DDILVQLN 221 (503)
T ss_pred HhCcch---HHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHHHHHhccHHHHHHHHhc----C-----ccHHHHHH
Confidence 223332 666666665534444567777776655321 222222221 2222222222 1 12355667
Q ss_pred HHHHHHHHHHhhcCChhHHHHHH-hhHHHHHHHhcccchh------hHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHH
Q 002257 527 CLRAISTILESVSRLPHLFVQIE-PTLLPIMRRMLTTDGQ------EVFEEVLEIVSYMTFFSPTISLE-MWSLWPLMME 598 (946)
Q Consensus 527 ~l~ti~~ll~~~~~~~~~~~~l~-~~l~p~i~~~l~~~~~------~~~~~~l~ll~~l~~~~~~i~p~-l~~l~~~l~~ 598 (946)
+++++..+... +....-++ .-+++.+...+.+... -+++..+...+.+... +|. ....||.+..
T Consensus 222 alell~~La~~----~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~----~~~~v~~~~p~~~~ 293 (503)
T PF10508_consen 222 ALELLSELAET----PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV----SPQEVLELYPAFLE 293 (503)
T ss_pred HHHHHHHHHcC----hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc----ChHHHHHHHHHHHH
Confidence 77877777763 22233333 3366666666554321 2345555666666543 333 3356666654
Q ss_pred HH
Q 002257 599 AL 600 (946)
Q Consensus 599 ~~ 600 (946)
.+
T Consensus 294 ~l 295 (503)
T PF10508_consen 294 RL 295 (503)
T ss_pred HH
Confidence 44
No 41
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.51 Score=57.20 Aligned_cols=342 Identities=16% Similarity=0.180 Sum_probs=176.0
Q ss_pred hhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcch-------h-hHHHHHHHHHHHHHhcccCCCcC
Q 002257 3 RDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD-------Q-QVYGALFVLRILSRKYEFKSDEE 74 (946)
Q Consensus 3 r~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s-------~-~~~~~L~~L~~i~k~~~~~~~~~ 74 (946)
=+.|++++.+.+..||-.+|.-+++|+.+. | ++|.++++..+-+ . .+|||+..|.++.++ +.
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r------Gl 412 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRL-P---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR------GL 412 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccC-c---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc------CC
Confidence 357888889999999999999999999997 6 5677766554422 1 789999999999975 21
Q ss_pred cchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHH-HHHHHhcCCCCCC
Q 002257 75 RTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI-LFLNVLERPVPSE 153 (946)
Q Consensus 75 ~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~-~~~~il~~~~~~~ 153 (946)
.+...+..+.|.+..-+.--... +.-.....++-.+|=+.|++....-|. .|.++.+ ++..++..-+
T Consensus 413 --Llps~l~dVvplI~kaL~Yd~~~-G~~s~G~~VRDaAcY~~WAf~Rays~~------~l~p~l~~L~s~LL~~Al--- 480 (1133)
T KOG1943|consen 413 --LLPSLLEDVVPLILKALHYDVRR-GQHSVGQHVRDAACYVCWAFARAYSPS------DLKPVLQSLASALLIVAL--- 480 (1133)
T ss_pred --cchHHHHHHHHHHHHHhhhhhhh-cccccccchHHHHHHHHHHHHhcCChh------hhhHHHHHHHHHHHHHHh---
Confidence 23344445555443211100000 000011233444555555544333333 2334333 2333332110
Q ss_pred CCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHH
Q 002257 154 GEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTN 233 (946)
Q Consensus 154 ~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~ 233 (946)
=|.+ ..||+.+...+...+.|+|+... .. + ++.. ..|.+=..+.
T Consensus 481 ---FDre-------vncRRAAsAAlqE~VGR~~n~p~-Gi---------------~-------Lis~---~dy~sV~~rs 524 (1133)
T KOG1943|consen 481 ---FDRE-------VNCRRAASAALQENVGRQGNFPH-GI---------------S-------LIST---IDYFSVTNRS 524 (1133)
T ss_pred ---cCch-------hhHhHHHHHHHHHHhccCCCCCC-ch---------------h-------hhhh---cchhhhhhhh
Confidence 1222 57889999998889988775210 00 0 1110 0111111111
Q ss_pred HHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHh
Q 002257 234 LILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRK 313 (946)
Q Consensus 234 ~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~ 313 (946)
.|..=+. +.- +.+......++.+++...++ -| + ..+|-.|+..|..|+..
T Consensus 525 Ncy~~l~--~~i----a~~~~y~~~~f~~L~t~Kv~-------HW---------------d--~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 525 NCYLDLC--VSI----AEFSGYREPVFNHLLTKKVC-------HW---------------D--VKIRELAAYALHKLSLT 574 (1133)
T ss_pred hHHHHHh--HHH----HhhhhHHHHHHHHHHhcccc-------cc---------------c--HHHHHHHHHHHHHHHHh
Confidence 1111111 100 11222233344444422222 12 1 23455666667778887
Q ss_pred cCcccHHHHHH-HHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHH----HHHHHhcccCCCC---C
Q 002257 314 RGKENLQKFIQ-FIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE----RMLVQHVFPEFSS---P 385 (946)
Q Consensus 314 ~~~~~l~~ll~-~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~----~~l~~~v~p~l~~---~ 385 (946)
.++......++ ++-..+. .+.-.+.|+..+.|.+...+....+....+. ..+. +++|.+.+ .
T Consensus 575 ~pk~~a~~~L~~lld~~ls---------~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~-~ii~~~~~~~~~ 644 (1133)
T KOG1943|consen 575 EPKYLADYVLPPLLDSTLS---------KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLL-SIIPPICDRYFY 644 (1133)
T ss_pred hHHhhcccchhhhhhhhcC---------CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhh-hhccHHHHHHhc
Confidence 76543322222 1112221 2668899999999999888765442211111 1222 23333321 2
Q ss_pred c---cchhHHHHHHHHhhhccccC-ChhHHHH-HHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 386 V---GHLRAKAAWVAGQYAHINFS-DQNNFRK-ALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 386 ~---~~lr~ra~~~l~~~~~~~f~-~~~~~~~-~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
. .++|...|.++-+++..+-+ .++.... .-..+.+++.+++ .+|-.|..|+..++..
T Consensus 645 rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 645 RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 2 48888999999998653310 1133333 3333445555555 7888899999888765
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=97.44 E-value=0.073 Score=64.42 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHH--HHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVV 419 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~l~ 419 (946)
|...|=-|++.++++... .+-+.+...|...+.+++|++|..|+.++.+.... +++.. ..+.+.+.
T Consensus 118 Np~IRaLALRtLs~Ir~~---------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~---~pelv~~~~~~~~L~ 185 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRVS---------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD---DMQLFYQQDFKKDLV 185 (746)
T ss_pred CHHHHHHHHHHHHcCCcH---------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---CcccccccchHHHHH
Confidence 778899999998886643 33344555666677899999999999999997542 22222 23556666
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 002257 420 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI 480 (946)
Q Consensus 420 ~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~i 480 (946)
.+|.|+++.|...|..+|..+.+.. +..+. .....+.+|+..+.+.+.=.-..+|+.+
T Consensus 186 ~LL~D~dp~Vv~nAl~aL~eI~~~~--~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 186 ELLNDNNPVVASNAAAIVCEVNDYG--SEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL 243 (746)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHhC--chhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 7788999999999999999998763 23332 2344556666666554322233444444
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.24 E-value=0.00072 Score=59.25 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=64.8
Q ss_pred hHHHHHHHHhhhccc-cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhh
Q 002257 390 RAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 468 (946)
Q Consensus 390 r~ra~~~l~~~~~~~-f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~ 468 (946)
|..+.+.++..+... -.-.+++..+++.++.++.|++..||.+||.||.++... .++.+.||++.++..|++++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~--~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV--ARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCC
Confidence 556667777765321 112378999999999999999999999999999999988 56888899999999999999876
Q ss_pred hhh
Q 002257 469 ENE 471 (946)
Q Consensus 469 ~~e 471 (946)
+..
T Consensus 81 d~~ 83 (97)
T PF12755_consen 81 DEN 83 (97)
T ss_pred chh
Confidence 543
No 44
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.14 Score=58.96 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=81.7
Q ss_pred HHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 002257 374 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 453 (946)
Q Consensus 374 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~ 453 (946)
+.+-|+..+++.-||+|-||..++=+..- +=|+.+...++-+...|.|+|+-|+..|..-++.+.+.. +....|.
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFL---kYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn--PknyL~L 219 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFL---KYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN--PQNYLQL 219 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHH---hhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC--Ccccccc
Confidence 44556667788999999999988754421 235789999999999999999999999999999998874 3333444
Q ss_pred hHHHHHHHHHHHhhhhhhh-HHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHh
Q 002257 454 LPQLLDEFFKLMNEVENED-LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN 508 (946)
Q Consensus 454 l~~il~~Ll~ll~~~~~e~-l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~ 508 (946)
.|. ++++|-...|-- +..+|. -|+ .++|+-+.+-..|...+..+++
T Consensus 220 AP~----ffkllttSsNNWmLIKiiK----LF~-aLtplEPRLgKKLieplt~li~ 266 (877)
T KOG1059|consen 220 APL----FYKLLVTSSNNWVLIKLLK----LFA-ALTPLEPRLGKKLIEPITELME 266 (877)
T ss_pred cHH----HHHHHhccCCCeehHHHHH----HHh-hccccCchhhhhhhhHHHHHHH
Confidence 443 445554433322 333333 232 3567777776666666666654
No 45
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.8 Score=52.55 Aligned_cols=391 Identities=15% Similarity=0.173 Sum_probs=217.9
Q ss_pred HhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcc-hHHHHHHHHHhcccCCCCCccchh
Q 002257 312 RKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY-KSELERMLVQHVFPEFSSPVGHLR 390 (946)
Q Consensus 312 ~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~-~~~l~~~l~~~v~p~l~~~~~~lr 390 (946)
...+++....+++...+.+++. + +-..|++.+...|.++.++....+. ...++. ++..+..|.+.+|
T Consensus 46 ~~~~~~~v~~l~~~~~~~l~~~---~----~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~-----~~~~~~tps~~~q 113 (569)
T KOG1242|consen 46 NQHGDQNVLNLKPCFEQRLNSL---H----NDNLRNNVVVLEGTLAFHLQIVDPRPISIIEI-----LLEELDTPSKSVQ 113 (569)
T ss_pred HhhhHHHHHHHHHHHHHHhccc---h----hHHHhhhhHHHHHHHHHhccccCcchhHHHHH-----HHHhcCCCcHHHH
Confidence 3445555556666666666542 2 5688999999999999997643221 113333 3345667899999
Q ss_pred HHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh
Q 002257 391 AKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 470 (946)
Q Consensus 391 ~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~ 470 (946)
.....|+.-+.- .. ....-..+.+.+.++|......=|..|+.++..+.... ..+.++++ .++..|...++.-.+
T Consensus 114 ~~~~~~l~~~~~-~~-~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~--~~l~~l~~ai~dk~~ 188 (569)
T KOG1242|consen 114 RAVSTCLPPLVV-LS-KGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLKEF--GFLDNLSKAIIDKKS 188 (569)
T ss_pred HHHHHHhhhHHH-Hh-hccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhhhh--hHHHHHHHHhcccch
Confidence 998888877643 11 12345567777788888667778899999999999886 45666665 577777777755322
Q ss_pred ----hhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHH
Q 002257 471 ----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFV 546 (946)
Q Consensus 471 ----e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~ 546 (946)
|....+.+......+....||...+...+...+..- . ...+.....+...+.+.+... ...
T Consensus 189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~------~-------~~Vr~Aa~~a~kai~~~~~~~--aVK 253 (569)
T KOG1242|consen 189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK------I-------NKVREAAVEAAKAIMRCLSAY--AVK 253 (569)
T ss_pred hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc------c-------hhhhHHHHHHHHHHHHhcCcc--hhh
Confidence 223445556667778888899888877766433221 1 123344556666666665321 122
Q ss_pred HHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCccc
Q 002257 547 QIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAH 625 (946)
Q Consensus 547 ~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~-~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~ 625 (946)
.+ +.|.+..+... ..-=-.-++++++.+.+..+ +++-.+..+.|.+...+-+...+.-.+...++..|-..
T Consensus 254 ~l---lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv---- 325 (569)
T KOG1242|consen 254 LL---LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV---- 325 (569)
T ss_pred Hh---hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh----
Confidence 22 22222222221 11112357899998887763 66666667778777776432233444444555554332
Q ss_pred ccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHccc-Cc-hhchHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002257 626 FLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG-QV-DHWVEPYLRITVERLRRAEKSYLKCLLVQ 703 (946)
Q Consensus 626 ~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~-~~-~~~l~~il~~~~~~L~~~~~~~~~~~~l~ 703 (946)
. .|+. ++.+...+-..+++++.. .-..+..+....-- .+ .|-+.-++..+-+.+....+..-|.....
T Consensus 326 -i--dN~d-I~~~ip~Lld~l~dp~~~------~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~I 395 (569)
T KOG1242|consen 326 -I--DNPD-IQKIIPTLLDALADPSCY------TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAII 395 (569)
T ss_pred -h--ccHH-HHHHHHHHHHHhcCcccc------hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence 2 2222 555555555556555311 22333333322111 11 23333333333334433223333554444
Q ss_pred HHHHHHh-hCHHHHHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhcc
Q 002257 704 VIADALY-YNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL 768 (946)
Q Consensus 704 v~~~~~~-~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~ 768 (946)
+=.+|.. -+|..+-.+|.+ .++++ =.++. .. -+.-|-+..-||+.++.-
T Consensus 396 idNm~~LveDp~~lapfl~~--Llp~l----k~~~~---------d~-~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 396 IDNMCKLVEDPKDLAPFLPS--LLPGL----KENLD---------DA-VPEVRAVAARALGALLER 445 (569)
T ss_pred HHHHHHhhcCHHHHhhhHHH--HhhHH----HHHhc---------CC-ChhHHHHHHHHHHHHHHH
Confidence 4444444 478877666654 22222 11221 22 355677888888888753
No 46
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.08 E-value=2.2 Score=56.86 Aligned_cols=372 Identities=15% Similarity=0.161 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHH---HHHHHH
Q 002257 300 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL---ERMLVQ 376 (946)
Q Consensus 300 R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l---~~~l~~ 376 (946)
+..|...|..++..-....++++. .++.. ++.+.+..++.++|.+....... +..... .. -..
T Consensus 547 q~~Aa~AL~nLi~~~d~~~I~~Lv----~LLls--------dd~~~~~~aL~vLgnIlsl~~~~-d~~~~g~~~~g-gL~ 612 (2102)
T PLN03200 547 QEIAAKTLTKLVRTADAATISQLT----ALLLG--------DLPESKVHVLDVLGHVLSVASLE-DLVREGSAAND-ALR 612 (2102)
T ss_pred HHHHHHHHHHHHhccchhHHHHHH----HHhcC--------CChhHHHHHHHHHHHHHhhcchh-HHHHHhhhccc-cHH
Confidence 455667777777655444444433 44433 14466777898998886532211 000000 01 113
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 452 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~----~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p 452 (946)
.+...+.++++-.|..|+|+++.++... ++ -.....++.++..|.+.+..|+..||.||.++..... .+...-
T Consensus 613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~--~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~ 689 (2102)
T PLN03200 613 TLIQLLSSSKEETQEKAASVLADIFSSR--QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVS 689 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCC--hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 3444566788999999999999997532 21 1234567888999998889999999999999997532 222111
Q ss_pred ch-HHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHH-HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHH
Q 002257 453 IL-PQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRA 530 (946)
Q Consensus 453 ~l-~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~t 530 (946)
++ ...+..|+.+++..+.+....++..+..-+.+.= -..++. ...+..+.++++++. + ..+. ....+
T Consensus 690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e--~~~ei~~~~~I~~Lv~lLr~G~--~---~~k~----~Aa~A 758 (2102)
T PLN03200 690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE--VAAEALAEDIILPLTRVLREGT--L---EGKR----NAARA 758 (2102)
T ss_pred HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch--HHHHHHhcCcHHHHHHHHHhCC--h---HHHH----HHHHH
Confidence 12 2356667777776555555555555433332110 011111 112233335555322 1 1222 23334
Q ss_pred HHHHHHhhcCChhH--HHHHHhhHHHHHHHhcccchhhH--HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHhhhH
Q 002257 531 ISTILESVSRLPHL--FVQIEPTLLPIMRRMLTTDGQEV--FEEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWA 604 (946)
Q Consensus 531 i~~ll~~~~~~~~~--~~~l~~~l~p~i~~~l~~~~~~~--~~~~l~ll~~l~~~~--~~i~p~l~~l~~~l~~~~~~~~ 604 (946)
+..+.+.-...... +.+-...+.|+ ..+|+....+- .-++++.+..+.+.. .+.++..|..|- ..
T Consensus 759 L~~L~~~~~~~~~~~~~~~~~g~v~~l-~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~--------e~ 829 (2102)
T PLN03200 759 LAQLLKHFPVDDVLKDSVQCRGTVLAL-VDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLA--------EV 829 (2102)
T ss_pred HHHHHhCCChhHHHHHHHHHhCcHHHH-HHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHH--------hc
Confidence 44454442111101 11223344444 44455433332 235888888888743 345554553331 11
Q ss_pred hhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHH
Q 002257 605 IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRI 684 (946)
Q Consensus 605 ~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~ 684 (946)
.+-+. .|-.++..|. |...+.-++++.++-.+. ..+++.++-+-++ .+..
T Consensus 830 p~~l~----~l~~~l~~~~--------p~~~~kai~il~~~~~~~----------~~~~~~~~~~~~~--------~~~~ 879 (2102)
T PLN03200 830 PSSLE----PLVRCLAEGH--------PLVQDKAIEILSRLCRDQ----------PVVLGDLIANASK--------CISS 879 (2102)
T ss_pred cCchH----HHHHHHHcCC--------hHHHHHHHHHHHHHhccC----------hhHHHHHHhcccc--------hHHH
Confidence 12222 2222233333 334466667777776432 2344555544433 2344
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHHhHH
Q 002257 685 TVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQ 738 (946)
Q Consensus 685 ~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~ 738 (946)
+..|.-+..+..++..-..++..+...+.+..++.|++.|.+..+....++.+.
T Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (2102)
T PLN03200 880 LADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLK 933 (2102)
T ss_pred HHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 444554433333333333333334556777788888888888777777777665
No 47
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.22 Score=58.12 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=77.9
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
|...|-.||++++++.-. .+.+++.-.|.....++.|++|..|...|-+.... +++...++...+=..
T Consensus 121 N~LiRasALRvlSsIRvp---------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL---d~e~k~qL~e~I~~L 188 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRVP---------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL---DPEQKDQLEEVIKKL 188 (968)
T ss_pred cHHHHHHHHHHHHhcchh---------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC---ChhhHHHHHHHHHHH
Confidence 778999999999887543 23344444555566789999999999999888653 244555888888888
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhh
Q 002257 422 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 468 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~ 468 (946)
|.|.++.|--+|+.|+...|.+. -+.|-++ ..+|++++.++
T Consensus 189 LaD~splVvgsAv~AF~evCPer--ldLIHkn----yrklC~ll~dv 229 (968)
T KOG1060|consen 189 LADRSPLVVGSAVMAFEEVCPER--LDLIHKN----YRKLCRLLPDV 229 (968)
T ss_pred hcCCCCcchhHHHHHHHHhchhH--HHHhhHH----HHHHHhhccch
Confidence 89999999999999999998773 3444443 33444444443
No 48
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.6 Score=54.89 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHhcchh--hH-HHHHHHHHHHHHh
Q 002257 22 GECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRK 66 (946)
Q Consensus 22 ~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~ 66 (946)
+.++..+...-=|+--|+|.|++..+++.. .+ .-|.+|+..+.++
T Consensus 125 glAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 125 GLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRK 172 (866)
T ss_pred HHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 444445555444677899999999999887 33 4788888888875
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.0067 Score=68.38 Aligned_cols=260 Identities=17% Similarity=0.212 Sum_probs=149.8
Q ss_pred CchhHhHHHHHHHHHHhhhhcC-CcchH-HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhcc--ccCChhHHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQT-EPYKS-ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI--NFSDQNNFRKALHS 417 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~-~~~~~-~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~--~f~~~~~~~~~~~~ 417 (946)
+...+.-|-.++..+|.+-.+. +.+.. .--+. ++..+.+++.-+|..|.|.+|.++.- .+++--.-.-++..
T Consensus 123 ~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~----fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~p 198 (514)
T KOG0166|consen 123 NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI----FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDP 198 (514)
T ss_pred ChhHHHHHHHHHHHHhcCchhhccccccCCchHH----HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHH
Confidence 4566777778888888875431 11110 10011 22346789999999999999999751 12222222345677
Q ss_pred HHhcCCCCC-CchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh--CCcccccHH-
Q 002257 418 VVSGLRDPE-LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF--GEEMAPYAL- 493 (946)
Q Consensus 418 l~~~L~d~~-~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~--~~~i~p~~~- 493 (946)
++..+..+. ....-.|..+|.++|+.++++..+ ..+.+++..|+.++...+.+.+..+.-++..-. +.+...+..
T Consensus 199 Ll~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 199 LLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 777776543 456678999999999998533333 246678999999999988888877666554222 122122222
Q ss_pred -HHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccc-hhhHHHHH
Q 002257 494 -GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD-GQEVFEEV 571 (946)
Q Consensus 494 -~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~-~~~~~~~~ 571 (946)
.++.+|+. ++... . .....-.+.+++.|+..-. .....-+-..++|.+..++.+. ....-.++
T Consensus 278 ~gvv~~LV~----lL~~~--~-------~~v~~PaLRaiGNIvtG~d--~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA 342 (514)
T KOG0166|consen 278 AGVVPRLVD----LLGHS--S-------PKVVTPALRAIGNIVTGSD--EQTQVVINSGALPVLSNLLSSSPKESIKKEA 342 (514)
T ss_pred ccchHHHHH----HHcCC--C-------cccccHHHhhccceeeccH--HHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence 23445553 33211 1 1122345677777655422 2222334567899999998854 34466778
Q ss_pred HHHHHHHHhcCC-CCCHHHH-HHHHHHHHHHhhhHhhhHhhhHHHHHHHHhc
Q 002257 572 LEIVSYMTFFSP-TISLEMW-SLWPLMMEALADWAIDFFPNILVPLDNYISR 621 (946)
Q Consensus 572 l~ll~~l~~~~~-~i~p~l~-~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~ 621 (946)
.=.++.++-..+ ++..-+- .++|.|++.+...+++.=.+..-++.|....
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 888888875432 3332232 5666666666543333333344444444333
No 50
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.8 Score=53.91 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--hHHHHHHHHHHHHHhc
Q 002257 14 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKY 67 (946)
Q Consensus 14 ~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i~k~~ 67 (946)
.+.++..++.++-.|++.|||..||+++|++.+....+ .-..++.++..+.+.+
T Consensus 109 ~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdv 164 (1041)
T KOG2020|consen 109 EKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLLSEEV 164 (1041)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999998877 3345566666666553
No 51
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.15 Score=59.51 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=98.4
Q ss_pred CCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 002257 341 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 420 (946)
Q Consensus 341 ~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~ 420 (946)
.||..|--|++.+|++... .+-..+..-+...+++.+|++|..|..++..+....- ....-.-++..+-.
T Consensus 98 ~np~iR~lAlrtm~~l~v~---------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~~~~~gl~~~L~~ 167 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVD---------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DLVEDSGLVDALKD 167 (734)
T ss_pred CCHHHHHHHhhceeeEeeh---------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hhccccchhHHHHH
Confidence 3899999999988887543 1222233444556789999999999999988865320 11233345566666
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHH
Q 002257 421 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 500 (946)
Q Consensus 421 ~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~ 500 (946)
.+.|+++.|...|..||..+.+... .....-...+++..++..+++...=....+|+.+.......- -=+.++++++.
T Consensus 168 ll~D~~p~VVAnAlaaL~eI~e~~~-~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~~i~~r~~ 245 (734)
T KOG1061|consen 168 LLSDSNPMVVANALAALSEIHESHP-SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAEDICERLT 245 (734)
T ss_pred HhcCCCchHHHHHHHHHHHHHHhCC-CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHHHHHHHhh
Confidence 6678888899999999999988752 234444566788888888887655555666666666554332 12445555554
Q ss_pred H
Q 002257 501 A 501 (946)
Q Consensus 501 ~ 501 (946)
.
T Consensus 246 p 246 (734)
T KOG1061|consen 246 P 246 (734)
T ss_pred h
Confidence 4
No 52
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.0097 Score=67.13 Aligned_cols=253 Identities=11% Similarity=0.162 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHH
Q 002257 298 SPRTASMDFVSELVRKRG--------KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSE 369 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~--------~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~ 369 (946)
..+..|+..|..++.... ...++. ..+++++. +-..+|=|..|+|.++.....-.+++-+
T Consensus 125 ~lq~eAAWaLTnIAsgtse~T~~vv~agavp~----fi~Ll~s~--------~~~v~eQavWALgNIagds~~~Rd~vl~ 192 (514)
T KOG0166|consen 125 TLQFEAAWALTNIASGTSEQTKVVVDAGAVPI----FIQLLSSP--------SADVREQAVWALGNIAGDSPDCRDYVLS 192 (514)
T ss_pred hHHHHHHHHHHHHhcCchhhccccccCCchHH----HHHHhcCC--------cHHHHHHHHHHHhccccCChHHHHHHHh
Confidence 346666666766665331 123222 23555542 5578999999999999774332222111
Q ss_pred HHHHHHHhcccCCCCCcc-chhHHHHHHHHhhhccc-cCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc
Q 002257 370 LERMLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHIN-FSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD 446 (946)
Q Consensus 370 l~~~l~~~v~p~l~~~~~-~lr~ra~~~l~~~~~~~-f~~~-~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~ 446 (946)
.-....++..+..+.+ -+.+.+.|+++.++..+ -.++ +....+++++..++.+.|.-|..-||.|+..+.+..+
T Consensus 193 --~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n- 269 (514)
T KOG0166|consen 193 --CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN- 269 (514)
T ss_pred --hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-
Confidence 1111222233344444 46778999999998754 1222 6788999999999999999999999999999998753
Q ss_pred ccccccc-hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh-CCcccccHHHHH-HHHHHHHHHHHhhccCCCCCCChhhHH
Q 002257 447 LNEIRPI-LPQLLDEFFKLMNEVENEDLVFTLETIVDKF-GEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALA 523 (946)
Q Consensus 447 ~~~l~p~-l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~-~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~ 523 (946)
+.++-. -..++..|..++...+.-...-+|..+-... +.+.. ...++ ..+...+..+...+ + .+..
T Consensus 270 -e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~Q--Tq~vi~~~~L~~l~~ll~~s---~----~~~i- 338 (514)
T KOG0166|consen 270 -EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQ--TQVVINSGALPVLSNLLSSS---P----KESI- 338 (514)
T ss_pred -HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHH--HHHHHhcChHHHHHHHhccC---c----chhH-
Confidence 222211 1234556666666655444444555442211 11110 00110 11222333444321 1 1111
Q ss_pred HHHHHHHHHHHHHhhcCChhHH-HHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002257 524 AVGCLRAISTILESVSRLPHLF-VQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 579 (946)
Q Consensus 524 ~~~~l~ti~~ll~~~~~~~~~~-~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~ 579 (946)
.....=+|+.|.. .+++-. .-+..-++|.+..+++....+.--|+.=.++.++
T Consensus 339 kkEAcW~iSNItA---G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 339 KKEACWTISNITA---GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHHHHHHhhc---CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 1122233444433 233223 3344678999999998876566666555555554
No 53
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.76 E-value=2 Score=51.45 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=100.2
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
|-..|.-.++-+-..+.. + ++..-...+.+..++++++|.+|+-|+.++|.. +.++....+++.+.++
T Consensus 68 d~ElKrL~ylYl~~yak~----~---P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-----~~~el~~~~~~~ik~~ 135 (757)
T COG5096 68 DVELKRLLYLYLERYAKL----K---PELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-----RVKELLGNIIDPIKKL 135 (757)
T ss_pred CHHHHHHHHHHHHHHhcc----C---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHH
Confidence 556666666655555543 1 233344567888899999999999999999655 3468999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 500 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~ 500 (946)
+.|++.-||-+|+.|+..+.+.. ++.+..- .....+-.++.+.+..-+..++-++.+...+...+|....+..+.
T Consensus 136 l~d~~ayVRk~Aalav~kly~ld--~~l~~~~--g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~ 210 (757)
T COG5096 136 LTDPHAYVRKTAALAVAKLYRLD--KDLYHEL--GLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIP 210 (757)
T ss_pred ccCCcHHHHHHHHHHHHHHHhcC--Hhhhhcc--cHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhh
Confidence 99999999999999999999763 2322221 022333334445555667777777777666666777777766554
No 54
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.74 E-value=0.0019 Score=50.29 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=43.0
Q ss_pred cchhHHHHHHHHhhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 002257 387 GHLRAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 440 (946)
Q Consensus 387 ~~lr~ra~~~l~~~~~~~f~-~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~ 440 (946)
|-+|..|+|.+|+.+..... ...+...+++.++.+|.|++..||..||.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999997642210 1257889999999999988889999999999764
No 55
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.67 E-value=0.007 Score=53.07 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=70.1
Q ss_pred hHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcC
Q 002257 345 QKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGL 422 (946)
Q Consensus 345 ~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~l~~~L 422 (946)
.|.|++.++++++.++.+. ....++. +.+.|+..+.++.+.+|.-||..+...+++ ++.. .++.+++.++.+.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~--~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~-~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD--ISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKV-ARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHh--HHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998653 2233433 445667778899999999999999998763 2332 56889999999999
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 002257 423 RDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 423 ~d~~~~V~~~Aa~Al~~~~ 441 (946)
.|++.-||..| .-|.+++
T Consensus 78 ~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred cCCchhHHHHH-HHHHHHh
Confidence 99999999866 4444443
No 56
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.61 E-value=0.11 Score=56.43 Aligned_cols=176 Identities=15% Similarity=0.197 Sum_probs=109.5
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 448 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~ 448 (946)
.++.++.+.|.|.++++++-+|.+|..|+|-++-+ +.+...+.+..+.+.++..+..|+..|+.++..++-... .+
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll---d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g-~~ 98 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL---DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG-ID 98 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-ch
Confidence 45688899999999999999999999999999863 346777888888888865578899999999998887643 12
Q ss_pred cc--------ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh-CCcccccHHHHHHHHHHHHHHHHhhccCCCCCCCh
Q 002257 449 EI--------RPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF-GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP 519 (946)
Q Consensus 449 ~l--------~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~-~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 519 (946)
.+ ......+++.+.+.+...+.+....+.+.+..-+ ...+.+ .+.+...|.- .|= +|...++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll----~yF----~p~t~~~ 169 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLL----LYF----NPSTEDN 169 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH----HHc----CcccCCc
Confidence 22 2334567777777776654444445555554433 233332 2455555542 231 3322111
Q ss_pred hhHHHHHHHHHHHHHHHhh-cCChhHHHHHHhhHHHHHHHhccc
Q 002257 520 GALAAVGCLRAISTILESV-SRLPHLFVQIEPTLLPIMRRMLTT 562 (946)
Q Consensus 520 ~~~~~~~~l~ti~~ll~~~-~~~~~~~~~l~~~l~p~i~~~l~~ 562 (946)
. .+-++++..+... ..++..-..+...++|.+..+...
T Consensus 170 ~-----~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 170 Q-----RLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred H-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 1 2233333444433 233434455666677777666544
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.57 E-value=0.028 Score=56.00 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=99.7
Q ss_pred hhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 002257 344 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 423 (946)
Q Consensus 344 ~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~ 423 (946)
..|-.++.++|-++..-. .-+++|+ ..+...|++++|.+|..|+.++++...-.+- .....++..++.++.
T Consensus 3 ~vR~n~i~~l~DL~~r~~------~~ve~~~-~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYP------NLVEPYL-PNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KVKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHhCc------HHHHhHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--eehhhhhHHHHHHHc
Confidence 456667777776665422 2445554 5677788999999999999999997432211 123455667777889
Q ss_pred CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh-----hhhhhhHHHHHHHHHHhhCCcccccHHHHHHH
Q 002257 424 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN-----EVENEDLVFTLETIVDKFGEEMAPYALGLCQN 498 (946)
Q Consensus 424 d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~-----~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~ 498 (946)
|++..||..|..++..+.... .++.+..++++++..|-.... ....+.....+..++..+.. ......++++
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~-~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~k 150 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKR-NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVEK 150 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHHH
Confidence 999999999999999998875 467777777777666654432 12334455666666766663 1244566666
Q ss_pred HHHHHHH
Q 002257 499 LAAAFWR 505 (946)
Q Consensus 499 L~~~~~~ 505 (946)
|++.+..
T Consensus 151 l~~~~~~ 157 (178)
T PF12717_consen 151 LCQRFLN 157 (178)
T ss_pred HHHHHHH
Confidence 6654444
No 58
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.53 E-value=1.3 Score=51.33 Aligned_cols=297 Identities=10% Similarity=0.119 Sum_probs=145.1
Q ss_pred CccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHH
Q 002257 385 PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 464 (946)
Q Consensus 385 ~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~l 464 (946)
..+-.|.=|..+|.+|.. .| |+....++.+++.+..|.+..||..|..+|..+|.+. + .+++.+...|.++
T Consensus 34 g~~k~K~Laaq~I~kffk-~F--P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~----~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFK-HF--PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--P----EHVSKVADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHC-C---GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-hC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--H----HHHhHHHHHHHHH
Confidence 356688889999999965 34 4688999999999999999999999999999999873 1 3667788888888
Q ss_pred Hhhhhhhh---HHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCC
Q 002257 465 MNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL 541 (946)
Q Consensus 465 l~~~~~e~---l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~ 541 (946)
++.-+... +..+|.++... +-. ..|...|-++......| ...+..++..|..-+..+...
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~---d~k-------~tL~~lf~~i~~~~~~d-------e~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQ---DPK-------GTLTGLFSQIESSKSGD-------EQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH----HH-------HHHHHHHHHHH---HS--------HHHHHHHHHHHHHHGGGS-TT
T ss_pred HhcccHHHHHHHHHHHHHHHhc---CcH-------HHHHHHHHHHHhcccCc-------hHHHHHHHHHHHHHHhhCcHH
Confidence 87544433 44555544332 111 12333333333110111 124455666666655555321
Q ss_pred hhH--HHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHh--h----hHhhhHhhhH
Q 002257 542 PHL--FVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALA--D----WAIDFFPNIL 612 (946)
Q Consensus 542 ~~~--~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~--~----~~~~~l~~~~ 612 (946)
.. -..++..+...+..+|+.-..+=++-.+++|..+-.+. ..-.+....+++.+..-.. . .+.+.+..++
T Consensus 168 -~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli 246 (556)
T PF05918_consen 168 -LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLI 246 (556)
T ss_dssp -TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHH
T ss_pred -HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHH
Confidence 11 14578888899999986422111222344444443221 1223345677777765431 1 1235666666
Q ss_pred HHHHHHHhcCcccccccCCCchHHHHHH-HHHHHHcCCCCCCcccCchhhHHHHHHHHccc----CchhchHHHHHHHHH
Q 002257 613 VPLDNYISRGTAHFLTCKEPDYQQSLWS-MVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG----QVDHWVEPYLRITVE 687 (946)
Q Consensus 613 ~~L~~~i~~~~~~~l~~~~~~~~~~i~~-i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~----~~~~~l~~il~~~~~ 687 (946)
.|+..-+.+..... .-..+++ ++.++| +.+++-....-..++..+.+-++- ...+.++.+++.+..
T Consensus 247 ~C~~~Alp~fs~~v-------~Sskfv~y~~~kvl--P~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 247 SCLRQALPFFSRGV-------SSSKFVNYMCEKVL--PKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKK 317 (556)
T ss_dssp HHHHHHGGG-BTTB---------HHHHHHHHHHTC--CCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHT
T ss_pred HHHHHhhHHhcCCC-------ChHHHHHHHHHHhc--CChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 66555332221111 1233444 344554 233322122234566666665553 234455555444443
Q ss_pred HHHh-hhhhHH----HHHHHHHHHHHHhhCHHHHH
Q 002257 688 RLRR-AEKSYL----KCLLVQVIADALYYNSSLTL 717 (946)
Q Consensus 688 ~L~~-~~~~~~----~~~~l~v~~~~~~~~~~~~l 717 (946)
.+=. .+.+.+ .-.+++.|..+....|..+.
T Consensus 318 ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~ 352 (556)
T PF05918_consen 318 YMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLN 352 (556)
T ss_dssp TS----------HHHHHHHHHHHHHHHTT-THHHH
T ss_pred hCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhh
Confidence 3321 122222 22344455555555666443
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.35 E-value=1.3 Score=50.70 Aligned_cols=208 Identities=20% Similarity=0.239 Sum_probs=118.6
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCC-CCCccchhHHHHHHHHhhhc-cccCChhHHHHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF-SSPVGHLRAKAAWVAGQYAH-INFSDQNNFRKALHSVV 419 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l-~~~~~~lr~ra~~~l~~~~~-~~f~~~~~~~~~~~~l~ 419 (946)
++..|-+++.+++++..+..+.. .++.++... ...+ ....+-.|.++...+.-..+ ...|......+++..++
T Consensus 203 ~~~~~~~~~~~la~LvNK~~~~~----~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 203 DEFSRLAALQLLASLVNKWPDDD----DLDEFLDSL-LQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred ChHHHHHHHHHHHHHHcCCCChh----hHHHHHHHH-HhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 47889999999999998865432 233333222 1222 22333344444433332222 11234456778888888
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHH
Q 002257 420 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNL 499 (946)
Q Consensus 420 ~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L 499 (946)
+.|.+ ..+...||.++.-++.+. .+.+.. ++-...+.| |+. .+...+++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~--~~~l~~----------------~~~a~vklL------ykQ---R~F~~~~p~L 328 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDS--DDVLNK----------------ENHANVKLL------YKQ---RFFTQVLPKL 328 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCc--HHhcCc----------------cccchhhhH------HhH---HHHHHHHHHH
Confidence 88877 457888999999988872 121111 000000000 111 1333444444
Q ss_pred HHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002257 500 AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 579 (946)
Q Consensus 500 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~ 579 (946)
.+ -.+.+. + + ....++.+++.+++.+. .+++..--+.++|++..+|+.+..+....+++.+..++
T Consensus 329 ~~----~~~~~~-~-----~---~k~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 329 LE----GFKEAD-D-----E---IKSNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred HH----HHhhcC-h-----h---hHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 43 222111 1 1 23456888999999863 33455555779999999998887788888999999888
Q ss_pred hcCC-CCCHHHHHHHHHHHH
Q 002257 580 FFSP-TISLEMWSLWPLMME 598 (946)
Q Consensus 580 ~~~~-~i~p~l~~l~~~l~~ 598 (946)
...+ -+.+.+-.+.|.+++
T Consensus 394 ~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 394 EEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HcCHHHHHHHHHHHHHHHHh
Confidence 7552 344444555555543
No 60
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.31 E-value=0.29 Score=55.77 Aligned_cols=184 Identities=17% Similarity=0.273 Sum_probs=108.9
Q ss_pred CCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcC-ChhHHHHHHhhHHHHHHHhcccc
Q 002257 485 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTD 563 (946)
Q Consensus 485 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~-~~~~~~~l~~~l~p~i~~~l~~~ 563 (946)
++.+.|++..+..+|...+.. .... ++. ++..++-.++..+++ .......+.+.+..++..+-+|+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~----~~s~-----ENe----ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP 83 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEK----PGSA-----ENE----YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP 83 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHT----T-ST-----C-H----HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-
T ss_pred HHHhhhhHHHHHHHHHHHHhc----CCCc-----cch----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 367899999999998854422 1111 122 344445455554432 22334556667777777777775
Q ss_pred -hhhHHHHHHHHHHHHHhcCCCCCHH----H-HHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCc-ccccccCCCchHH
Q 002257 564 -GQEVFEEVLEIVSYMTFFSPTISLE----M-WSLWPLMMEALADWAIDFFPNILVPLDNYISRGT-AHFLTCKEPDYQQ 636 (946)
Q Consensus 564 -~~~~~~~~l~ll~~l~~~~~~i~p~----l-~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~-~~~l~~~~~~~~~ 636 (946)
...|--+.||-++.++++..+-.|. + -.+||.+...+..+-.++++-+..+|-..+...+ ..+- +.|.
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~- 158 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYK- 158 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTG-
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHH-
Confidence 4678889999999999876433333 3 4888888888886667888888888877777766 2221 1232
Q ss_pred HHHHHHHHHHcCCCCCCc-c-cCchhhHHHHHHHHcccCc--hhchHHHHHHHHHHHHh
Q 002257 637 SLWSMVSSIMADKNLEDG-D-IEPAPKLIEVVFQNCKGQV--DHWVEPYLRITVERLRR 691 (946)
Q Consensus 637 ~i~~i~~~ll~~~~~~~~-~-~~~a~~ll~~il~~~~~~~--~~~l~~il~~~~~~L~~ 691 (946)
.++..++. +..-+. + .-...+++.+++.+.+..+ .+.+.+++... ++|-.
T Consensus 159 ---~L~~~Ll~-p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvF-QkLi~ 212 (435)
T PF03378_consen 159 ---QLFPPLLS-PALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVF-QKLIA 212 (435)
T ss_dssp ---GGHHHHTS-GGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHH-HHHHT
T ss_pred ---HHHHHHcC-cchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHH-HHHHC
Confidence 23334442 221111 1 1234678999999988754 36777777765 55544
No 61
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.27 E-value=0.048 Score=53.43 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=99.4
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHHh
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEA 443 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~----~~~~~~~~~l~~~L~d~~-~~V~~~Aa~Al~~~~~~ 443 (946)
.+..| ...+...++++.+.-|..++.+++...+.. +. +...+-++.+++.|+.++ ..+...|+.++..++..
T Consensus 22 ~l~~l-~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~--~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKL-VTRINSLLQSKSAYSRWAGLCLLKVTVEQC--SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHH-HHHHHHHhCCCChhhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34443 455677788888888988888888876521 12 445677888899998654 55889999999999886
Q ss_pred cc-----cccccccchHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhCCcccccHHHHHHHHH
Q 002257 444 CR-----DLNEIRPILPQLLDEFFKLMNE-VENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 500 (946)
Q Consensus 444 ~~-----~~~~l~p~l~~il~~Ll~ll~~-~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~ 500 (946)
-. .++...|+++.+++.++++++. ...+....+|..++..+..-+.||+..+-..+.
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 43 4566789999999999999983 445677889999999999999999998866554
No 62
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.08 E-value=0.61 Score=52.94 Aligned_cols=299 Identities=12% Similarity=0.135 Sum_probs=149.8
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh--HHHHHHHHHHhhCCcccc
Q 002257 413 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED--LVFTLETIVDKFGEEMAP 490 (946)
Q Consensus 413 ~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~--l~~~L~~iv~~~~~~i~p 490 (946)
.+..-+++.+.|+.-|-|..++.+..+++..-...+.=.-.-..++..++..+++.+++. +..|..+++...+-...|
T Consensus 521 ~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 521 RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCc
Confidence 466777788888888888888888888877643111111233456677777777654433 445566665555556678
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHH
Q 002257 491 YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEE 570 (946)
Q Consensus 491 ~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~ 570 (946)
|...++..+. ..+++ +-| +....+..+..++..++.++++.. .+. .+=-++..-|..+-.+.+..
T Consensus 601 ~l~~ivStiL----~~L~~--k~p----~vR~~aadl~~sl~~vlk~c~e~~-~l~----klg~iLyE~lge~ypEvLgs 665 (975)
T COG5181 601 HLSMIVSTIL----KLLRS--KPP----DVRIRAADLMGSLAKVLKACGETK-ELA----KLGNILYENLGEDYPEVLGS 665 (975)
T ss_pred chHHHHHHHH----HHhcC--CCc----cHHHHHHHHHHHHHHHHHhcchHH-HHH----HHhHHHHHhcCcccHHHHHH
Confidence 8887776544 23331 122 333444456666777777765421 222 23333444455555666666
Q ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcC
Q 002257 571 VLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD 648 (946)
Q Consensus 571 ~l~ll~~l~~~~--~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~ 648 (946)
++.-+.++.... .++.|..-+++|.+...+.+-......+-+.++...-..+|+..-. -+++...++.+..+-+
T Consensus 666 il~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~---rEWMRIcfeLvd~Lks- 741 (975)
T COG5181 666 ILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV---REWMRICFELVDSLKS- 741 (975)
T ss_pred HHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH---HHHHHHHHHHHHHHHH-
Confidence 666666655332 2344444455555544443211222223334444444556654321 1344444454443322
Q ss_pred CCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHh------
Q 002257 649 KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHK------ 722 (946)
Q Consensus 649 ~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~------ 722 (946)
- .-+-+.+|-..++.|-+..|. ..++..++..|...+...-.+..+.+-..+=+.+|-.++-.|-+
T Consensus 742 ~--nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe 813 (975)
T COG5181 742 W--NKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPE 813 (975)
T ss_pred h--hHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCch
Confidence 1 111123455555555555543 25666777766542211111111111111223345555544422
Q ss_pred cCchHHHHHHHHHhHH
Q 002257 723 LGVATEVFNLWFQMLQ 738 (946)
Q Consensus 723 ~~~~~~~~~~w~~~~~ 738 (946)
.+++++++...+-.+.
T Consensus 814 ~nVQnGvLkam~fmFe 829 (975)
T COG5181 814 ANVQNGVLKAMCFMFE 829 (975)
T ss_pred hHHHHhHHHHHHHHHH
Confidence 2566777666554444
No 63
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.00 E-value=4 Score=46.67 Aligned_cols=308 Identities=15% Similarity=0.191 Sum_probs=151.3
Q ss_pred HHHHhcccCCCCCccchhHHHHHHHHhhhccc--cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc
Q 002257 373 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI 450 (946)
Q Consensus 373 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~--f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l 450 (946)
.+...++..|+++.|-+|-||..+.|-.+.+. +-..+.+..+=..+...|....+-|--.-..|++.+.... .-..+
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~-~~~~m 682 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH-RFRSM 682 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh-ccccc
Confidence 35567778899999999999999999987642 1112455556666778886544445555555666555543 34567
Q ss_pred ccchHHHHHHHHHHHhhhhhhhHH---HHHHHHHHhhCCccccc-HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHH
Q 002257 451 RPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEEMAPY-ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVG 526 (946)
Q Consensus 451 ~p~l~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~~~~~i~p~-~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 526 (946)
+|-+..|+..|..++..-...... ..+..|.....+.+.|- --.++-.|+..+ ..|+ +.+-+ .
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~n-----------KeiRR-~ 749 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWN-----------KEIRR-N 749 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhh-----------HHHHH-h
Confidence 788888888888888664333222 23334444444543321 112333444322 1232 12211 2
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccch--hh-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 002257 527 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG--QE-VFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADW 603 (946)
Q Consensus 527 ~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~--~~-~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~ 603 (946)
..+|++-|-++++.+ + ++-++..-|.... .- ...-++ +.+.+++.+ +.++|.+++-...
T Consensus 750 A~~tfG~Is~aiGPq-d--------vL~~LlnnLkvqeRq~RvctsvaI---~iVae~cgp-----fsVlP~lm~dY~T- 811 (975)
T COG5181 750 ATETFGCISRAIGPQ-D--------VLDILLNNLKVQERQQRVCTSVAI---SIVAEYCGP-----FSVLPTLMSDYET- 811 (975)
T ss_pred hhhhhhhHHhhcCHH-H--------HHHHHHhcchHHHHHhhhhhhhhh---hhhHhhcCc-----hhhHHHHHhcccC-
Confidence 334444455555421 1 1111111111100 00 000011 112222222 3455666544331
Q ss_pred HhhhHhh-hHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCc-hhchHHH
Q 002257 604 AIDFFPN-ILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQV-DHWVEPY 681 (946)
Q Consensus 604 ~~~~l~~-~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~-~~~l~~i 681 (946)
-..++++ ++..+--++.+-.+.-+ .|+-.+.-++...+.++ +..-+..|..+|..+.++|++.. ....-.+
T Consensus 812 Pe~nVQnGvLkam~fmFeyig~~s~-----dYvy~itPlleDAltDr--D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHL 884 (975)
T COG5181 812 PEANVQNGVLKAMCFMFEYIGQASL-----DYVYSITPLLEDALTDR--DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHL 884 (975)
T ss_pred chhHHHHhHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhhccc--chHHHHHHHHHHHHHhcCCCCcccHHHHHHH
Confidence 1223332 22333323333222222 57777777777777655 33345678899999999998742 2223334
Q ss_pred HHHHHHHHHhhhhhHHHHHHH---HHHHHHHhhCHHHHHHHHHh
Q 002257 682 LRITVERLRRAEKSYLKCLLV---QVIADALYYNSSLTLSILHK 722 (946)
Q Consensus 682 l~~~~~~L~~~~~~~~~~~~l---~v~~~~~~~~~~~~l~~L~~ 722 (946)
++.+...+-. +.+.+.+.+. .-|+.|+ ++..++.++.+
T Consensus 885 lNllwpNIle-~sPhvi~~~~Eg~e~~~~~l--g~g~~m~Yv~q 925 (975)
T COG5181 885 LNLLWPNILE-PSPHVIQSFDEGMESFATVL--GSGAMMKYVQQ 925 (975)
T ss_pred HHHhhhhccC-CCcHHHHHHHHHHHHHHHHh--ccHHHHHHHHH
Confidence 4444443322 2333333332 2333332 45555555544
No 64
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.99 E-value=0.15 Score=62.04 Aligned_cols=237 Identities=16% Similarity=0.229 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHHHhcC-cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 298 SPRTASMDFVSELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~-~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
.-|.+|..||..++.... +..+..+++|+...++.. ....|-+|+..+..+-.-..+..+... ..|..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds--------~a~Vra~Al~Tlt~~L~~Vr~~~~~da---niF~e 506 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDS--------EADVRATALETLTELLALVRDIPPSDA---NIFPE 506 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCc--------hHHHHHHHHHHHHHHHhhccCCCcccc---hhhHh
Confidence 357789999999998874 456788899998887653 457788888888777766665443322 34677
Q ss_pred hcccCCC----C-CccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc--CCCCCC---c--hHHHHHHHHHHHHHhc
Q 002257 377 HVFPEFS----S-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG--LRDPEL---P--VRVDSVFALRSFVEAC 444 (946)
Q Consensus 377 ~v~p~l~----~-~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~--L~d~~~---~--V~~~Aa~Al~~~~~~~ 444 (946)
|++|.++ + ..-++|..-.-++++++..-. .+...-+.+-.. +++++- + -...-..||.
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~------ 576 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH------ 576 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccccccccccchHHHHHH------
Confidence 8888875 3 567899888889998876221 111111111111 222211 1 0011111111
Q ss_pred ccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHH
Q 002257 445 RDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAA 524 (946)
Q Consensus 445 ~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~ 524 (946)
.-+.+.+..|+.=-...--..+++.|-.++..|+.+= --.-|..+|+..+ + | ...+.+
T Consensus 577 -------~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfL-N-------D-----kDw~LR 634 (1431)
T KOG1240|consen 577 -------HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFL-N-------D-----KDWRLR 634 (1431)
T ss_pred -------HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHh-c-------C-----ccHHHH
Confidence 1122222222211000011123333444445554321 1123456666322 1 2 124677
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC
Q 002257 525 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 582 (946)
Q Consensus 525 ~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~ 582 (946)
...+++|..+--.++. ..+++.++|++++.|+...+-.+..++.-++.+++..
T Consensus 635 ~aFfdsI~gvsi~VG~-----rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 635 GAFFDSIVGVSIFVGW-----RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred HHHHhhccceEEEEee-----eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 8888988766555553 2367889999999998877778899999999998754
No 65
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.98 E-value=0.0089 Score=54.89 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=66.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHH--HHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVV 419 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~l~ 419 (946)
+|..|++++.+++.++....+.. ...+..-..+.+++.+.++++-+|..|+|++++++...-...+.. ..+++.++
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~ 97 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNI--QAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence 68999999999999987621100 000110112333444566789999999999999976320011112 23688899
Q ss_pred hcCCCCCCchHHHHHHHHHHHH
Q 002257 420 SGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 420 ~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
++|++.+..++..|+.+|.+++
T Consensus 98 ~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 98 NLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHhh
Confidence 9998888899999999999876
No 66
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=7.6 Score=49.40 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=74.4
Q ss_pred CCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHh--cccCCCCCccchhHHHHHHHHhhhcc--ccCCh----hHHH
Q 002257 341 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH--VFPEFSSPVGHLRAKAAWVAGQYAHI--NFSDQ----NNFR 412 (946)
Q Consensus 341 ~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~--v~p~l~~~~~~lr~ra~~~l~~~~~~--~f~~~----~~~~ 412 (946)
+.||.|||+..|+.-+-.+-. ...+.+.+..+.... +.-+.+..-+-.--++|.++|+.+-- .-.+. +.+.
T Consensus 1051 kewRVReasclAL~dLl~g~~-~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRP-FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence 479999999999988776621 111222232222110 11111112233334556666665310 11122 4455
Q ss_pred HHHHHHHhc-CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHH
Q 002257 413 KALHSVVSG-LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLV 474 (946)
Q Consensus 413 ~~~~~l~~~-L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~ 474 (946)
.++|.++.- +.+.-..||--+...+-.+... ....++||++.++..|+.+..+.++-.+.
T Consensus 1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLn 1190 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLN 1190 (1702)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHH
Confidence 555555432 2233344777777777777766 56799999999999999998877655443
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=5.6 Score=47.18 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=75.1
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+...|.-.|.+...+-+. .. ++--.+.+.+..+|++++.++.+-|+..+|+.+. +|+.+.+++-+-+.
T Consensus 83 ~f~dKRiGYLaamLlLdE---~q----dvllLltNslknDL~s~nq~vVglAL~alg~i~s-----~EmardlapeVe~L 150 (866)
T KOG1062|consen 83 NFLDKRIGYLAAMLLLDE---RQ----DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS-----PEMARDLAPEVERL 150 (866)
T ss_pred CchHHHHHHHHHHHHhcc---ch----HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC-----HHHhHHhhHHHHHH
Confidence 777788777776665543 22 3445678889999999999999999999988863 68999999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHh
Q 002257 422 LRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
|+..+.-||-.|+.|..+|++.
T Consensus 151 l~~~~~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 151 LQHRDPYIRKKAALCAVRFIRK 172 (866)
T ss_pred HhCCCHHHHHHHHHHHHHHHHc
Confidence 9998899999999999999987
No 68
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=5.6 Score=47.06 Aligned_cols=159 Identities=13% Similarity=0.167 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhh--------cCCcchHH
Q 002257 298 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK--------QTEPYKSE 369 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~--------~~~~~~~~ 369 (946)
.-|++|..-|++++++|+..+...=|.-+.+.|+.--. .-|+.=+++-.+.-.+. +...-.++
T Consensus 38 eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~---------D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd 108 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM---------DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDD 108 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC---------CHHHHHHHHHHHHHHHhcCcchhhcccchhhhH
Confidence 34777888899999999665554445555566654222 22222222222222211 11112345
Q ss_pred HHHHHHHhccc----------CCCCCccchhHHHHHHHHhhhccccCChhH------HHHHHHHHHhcCCCCCCchHHHH
Q 002257 370 LERMLVQHVFP----------EFSSPVGHLRAKAAWVAGQYAHINFSDQNN------FRKALHSVVSGLRDPELPVRVDS 433 (946)
Q Consensus 370 l~~~l~~~v~p----------~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~------~~~~~~~l~~~L~d~~~~V~~~A 433 (946)
+..|+...++. .+..-.-.+|.-|+.+++..-. .++.+. ++.-+..++..|.|..-|+|-.|
T Consensus 109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls--~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLS--CRPTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHh--cCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 55555443322 1122345689999999988744 334422 33445667777888889999999
Q ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHHHhhh
Q 002257 434 VFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 468 (946)
Q Consensus 434 a~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~ 468 (946)
..-|..+......-..+. -.+.++++||.++.+-
T Consensus 187 iLlL~eL~k~n~~IQKlV-AFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLV-AFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHccCchHHHHH-HHHHHHHHHHHHHHhc
Confidence 999999888753222222 2478899999999763
No 69
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=1.7 Score=50.88 Aligned_cols=190 Identities=14% Similarity=0.201 Sum_probs=106.9
Q ss_pred cChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhh
Q 002257 280 EDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 359 (946)
Q Consensus 280 ~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~ 359 (946)
.-|+||||- .| ++-||+-...+.++++++.+.++|.-. ....|.-|++|++.|...
T Consensus 109 QHPNEyiRG--------~T--------LRFLckLkE~ELlepl~p~IracleHr--------hsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 109 QHPNEYIRG--------ST--------LRFLCKLKEPELLEPLMPSIRACLEHR--------HSYVRRNAILAIFSIYKN 164 (948)
T ss_pred cCchHhhcc--------hh--------hhhhhhcCcHHHhhhhHHHHHHHHhCc--------chhhhhhhheeehhHHhh
Confidence 379999973 22 444566566789999999999998652 445666677777777654
Q ss_pred hhcCCcchHHHHHHHHHhcccCCCC---Ccc------chhHHHHHHHHh-hhcc-cc-----------------CChhHH
Q 002257 360 LKQTEPYKSELERMLVQHVFPEFSS---PVG------HLRAKAAWVAGQ-YAHI-NF-----------------SDQNNF 411 (946)
Q Consensus 360 l~~~~~~~~~l~~~l~~~v~p~l~~---~~~------~lr~ra~~~l~~-~~~~-~f-----------------~~~~~~ 411 (946)
... +.++...++..++..+... -+. .=+.||..+++. +..+ .| ++|...
T Consensus 165 ~~~---L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 165 FEH---LIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred hhh---hcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 221 1112233333333333211 011 113444433322 2111 11 234455
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhhCCcccc
Q 002257 412 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN-EVENEDLVFTLETIVDKFGEEMAP 490 (946)
Q Consensus 412 ~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~-~~~~e~l~~~L~~iv~~~~~~i~p 490 (946)
..+++.+++.|++++..|+..||.+|.++..+ ++.+++- -+.++.++- +.++..-..++.++.+.- +
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~---p~alk~A----a~~~i~l~~kesdnnvklIvldrl~~l~-----~ 309 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND---PTALKAA----ASTYIDLLVKESDNNVKLIVLDRLSELK-----A 309 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCC---HHHHHHH----HHHHHHHHHhccCcchhhhhHHHHHHHh-----h
Confidence 66778888889888889999999998877665 4555554 444444443 244444445555554322 2
Q ss_pred cHHHHHHHHHHHHHHHHh
Q 002257 491 YALGLCQNLAAAFWRCMN 508 (946)
Q Consensus 491 ~~~~l~~~L~~~~~~~~~ 508 (946)
--..+++-|+.-+.+++.
T Consensus 310 ~~~~il~~l~mDvLrvLs 327 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLS 327 (948)
T ss_pred hhHHHHHHHHHHHHHHcC
Confidence 334556666666667664
No 70
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.46 E-value=0.69 Score=48.90 Aligned_cols=237 Identities=11% Similarity=0.138 Sum_probs=122.1
Q ss_pred cccCCCCCccchhHHHHHHHHhhhc-cc--cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAH-IN--FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~-~~--f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
+-+.|+++.+..|+||..+++..-. +. .-+.+...-++....+.|.|. ..-..|..++..++.... .-....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~~~~~---~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALVKMKN---FSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHhCcC---CChhhH
Confidence 3456778999999999999998743 21 112345566777777778553 333344777777775543 112235
Q ss_pred HHHHHHHHHHHhh-----hhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHH
Q 002257 455 PQLLDEFFKLMNE-----VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 529 (946)
Q Consensus 455 ~~il~~Ll~ll~~-----~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 529 (946)
..+++.+++-.+- .+--.+...+..+++.+.+.+.......+..++ +.+ .+++|| .+- +.+++
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i----~~~-~gEkDP----RnL---l~~F~ 146 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFI----QLI-DGEKDP----RNL---LLSFK 146 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHH----HHh-ccCCCH----HHH---HHHHH
Confidence 5666666543221 111225577788888877766555555444333 333 244565 333 34455
Q ss_pred HHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccch-h--hHHH-HHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHhhhH
Q 002257 530 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG-Q--EVFE-EVLEIVSYMTFFSPTISLEMW-SLWPLMMEALADWA 604 (946)
Q Consensus 530 ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~-~--~~~~-~~l~ll~~l~~~~~~i~p~l~-~l~~~l~~~~~~~~ 604 (946)
.+..++..... ++....+.+.+...+=-.+.++. . .... +.-.-+...+. -+|.+- ..||.++..+.+..
T Consensus 147 l~~~i~~~~~~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~----s~~~fa~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 147 LLKVILQEFDI-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS----STPLFAPFAFPLLLEKLDSTS 221 (262)
T ss_pred HHHHHHHhccc-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc----CcHhhHHHHHHHHHHHHcCCC
Confidence 55555555432 33333333333332222233321 1 1111 21122222222 233443 56788888776432
Q ss_pred ----hhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHH
Q 002257 605 ----IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSS 644 (946)
Q Consensus 605 ----~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ 644 (946)
.|.+..+..|+. .+|+..+. +|...+++.++.
T Consensus 222 ~~~K~D~L~tL~~c~~---~y~~~~~~-----~~~~~iw~~lk~ 257 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIE---NYGADSLS-----PHWSTIWNALKF 257 (262)
T ss_pred cHHHHHHHHHHHHHHH---HCCHHHHH-----HHHHHHHHHHHH
Confidence 233333333333 34665555 678888776654
No 71
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.34 E-value=0.65 Score=56.93 Aligned_cols=275 Identities=15% Similarity=0.174 Sum_probs=134.8
Q ss_pred cchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-----cccccccchHHHHHHH
Q 002257 387 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-----DLNEIRPILPQLLDEF 461 (946)
Q Consensus 387 ~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-----~~~~l~p~l~~il~~L 461 (946)
+-.|..|+.++..++.+. .++..+..+++-+++++.|+..-||..|..+|..++..-. ....+..| |+..|
T Consensus 437 ~~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY---lfP~L 512 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY---LFPHL 512 (1431)
T ss_pred chhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh---hhhhh
Confidence 445677788877777633 2456788999999999999999999999999999987632 22223334 33334
Q ss_pred HHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCC----CChhhHHHHHHHHHHHHHHHh
Q 002257 462 FKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDA----DDPGALAAVGCLRAISTILES 537 (946)
Q Consensus 462 l~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~----~~~~~~~~~~~l~ti~~ll~~ 537 (946)
-.++.+.....+.-+..+-+..+.... -....+.+.+.. .. -.++|++ .....--...+..++...+.+
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA-~rFle~~q~~~~-----~g-~~n~~nset~~~~~~~~~~~~L~~~V~~~v~s 585 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTA-YRFLELTQELRQ-----AG-MLNDPNSETAPEQNYNTELQALHHTVEQMVSS 585 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHH-HHHHHHHHHHHh-----cc-cccCcccccccccccchHHHHHHHHHHHHHHH
Confidence 444443222222222111111111000 011111111110 00 0012211 011122344567777777777
Q ss_pred h-cC-ChhHHHHHHhhHHHHHHHhcccchhh--------HHHH---HH--HHHHHHHhc----C-CCCCHHHHHHHHHHH
Q 002257 538 V-SR-LPHLFVQIEPTLLPIMRRMLTTDGQE--------VFEE---VL--EIVSYMTFF----S-PTISLEMWSLWPLMM 597 (946)
Q Consensus 538 ~-~~-~~~~~~~l~~~l~p~i~~~l~~~~~~--------~~~~---~l--~ll~~l~~~----~-~~i~p~l~~l~~~l~ 597 (946)
+ .+ .|-+-..+.+.+.|+..+--+....| |+.+ .| .+..++... . +++++. +.|.|.
T Consensus 586 Llsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey---llPLl~ 662 (1431)
T KOG1240|consen 586 LLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY---LLPLLQ 662 (1431)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH---HHHHHH
Confidence 5 22 23333444455666554433222111 1111 00 011111111 1 123333 356666
Q ss_pred HHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHccc-C---
Q 002257 598 EALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG-Q--- 673 (946)
Q Consensus 598 ~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~-~--- 673 (946)
..+.+...-.+...+.+|...+..| ++.. .++-.+++-..-+|..++ .--+..++.+|.++..++.. .
T Consensus 663 Q~ltD~EE~Viv~aL~~ls~Lik~~---ll~K---~~v~~i~~~v~PlL~hPN--~WIR~~~~~iI~~~~~~ls~advyc 734 (1431)
T KOG1240|consen 663 QGLTDGEEAVIVSALGSLSILIKLG---LLRK---PAVKDILQDVLPLLCHPN--LWIRRAVLGIIAAIARQLSAADVYC 734 (1431)
T ss_pred HhccCcchhhHHHHHHHHHHHHHhc---ccch---HHHHHHHHhhhhheeCch--HHHHHHHHHHHHHHHhhhhhhhheE
Confidence 6665333445566677777777776 5643 444444444344444442 11234678888888888875 2
Q ss_pred -chhchHHHHH
Q 002257 674 -VDHWVEPYLR 683 (946)
Q Consensus 674 -~~~~l~~il~ 683 (946)
+.|++.+++.
T Consensus 735 ~l~P~irpfl~ 745 (1431)
T KOG1240|consen 735 KLMPLIRPFLE 745 (1431)
T ss_pred EeehhhHHhhh
Confidence 3455555555
No 72
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=8.7 Score=45.27 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=70.1
Q ss_pred HHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 375 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 375 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
-+.+-.+|++|+-|+|+....|+ ++.+.+|.+..+++.+..||...+.-||-.|..|+-.+... .+.+-|-.
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFL-----ckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~pDa 172 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFL-----CKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIPDA 172 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhh-----hhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcCCh
Confidence 35556678899999999999999 66667899999999999999999999999999999998876 47788888
Q ss_pred HHHHHHHHH
Q 002257 455 PQLLDEFFK 463 (946)
Q Consensus 455 ~~il~~Ll~ 463 (946)
|.++...+.
T Consensus 173 peLi~~fL~ 181 (948)
T KOG1058|consen 173 PELIESFLL 181 (948)
T ss_pred HHHHHHHHH
Confidence 888888764
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.10 E-value=7.5 Score=44.24 Aligned_cols=293 Identities=14% Similarity=0.118 Sum_probs=157.0
Q ss_pred chhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 002257 343 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 422 (946)
Q Consensus 343 ~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L 422 (946)
.+..-|.+.++-.+.+.+.+..+...++.+|+.. .+.+..-.+.--+...+-+++. ..-.++...+.+..+-..|
T Consensus 238 mknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~----wls~k~emV~lE~Ar~v~~~~~-~nv~~~~~~~~vs~L~~fL 312 (898)
T COG5240 238 MKNQLAGVLLVRATVELLKENSQALLQLRPFLNS----WLSDKFEMVFLEAARAVCALSE-ENVGSQFVDQTVSSLRTFL 312 (898)
T ss_pred cccchhheehHHHHHHHHHhChHHHHHHHHHHHH----HhcCcchhhhHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHH
Confidence 3456677778888888887765555555555543 3445445555555555555543 1113467788888888888
Q ss_pred CCCCCchHHHHHHHHHHHHHhcccc-cccccchHHH------------HHHHHHHHhhhhhhhHHHHHHHHHHhhCCccc
Q 002257 423 RDPELPVRVDSVFALRSFVEACRDL-NEIRPILPQL------------LDEFFKLMNEVENEDLVFTLETIVDKFGEEMA 489 (946)
Q Consensus 423 ~d~~~~V~~~Aa~Al~~~~~~~~~~-~~l~p~l~~i------------l~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~ 489 (946)
.++..+.|.+|.+.|..+.-....+ ..--|.++.+ +..|++.-.+-..+.++..|-+++.-.++++.
T Consensus 313 ~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FK 392 (898)
T COG5240 313 KSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFK 392 (898)
T ss_pred hcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCce
Confidence 8888889999999999987653200 0111222222 33333333333334466666666777788887
Q ss_pred ccHHHHHHHHHHHHHHHHhhc-------cCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhccc
Q 002257 490 PYALGLCQNLAAAFWRCMNTA-------EADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT 562 (946)
Q Consensus 490 p~~~~l~~~L~~~~~~~~~~~-------~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~ 562 (946)
-.+.+-+..|+-.|.+-|... -.++ ...-+..++.++|+.+++.. |+. .+..+..+..-++
T Consensus 393 iI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e----Gg~eFK~~~Vdaisd~~~~~---p~s----kEraLe~LC~fIE- 460 (898)
T COG5240 393 IIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE----GGLEFKKYMVDAISDAMEND---PDS----KERALEVLCTFIE- 460 (898)
T ss_pred EEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHhhC---chH----HHHHHHHHHHHHh-
Confidence 777777777766554444310 0111 11224445666666666553 211 1222333322221
Q ss_pred chhhHHHHHHHHHHHHHhcCC-CCCHH--HHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHH
Q 002257 563 DGQEVFEEVLEIVSYMTFFSP-TISLE--MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLW 639 (946)
Q Consensus 563 ~~~~~~~~~l~ll~~l~~~~~-~i~p~--l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~ 639 (946)
..+|-+-++.+++.+-+-.| .-.|. +..++..++- + ..-.-.+.+.+|..|-....+.++ -+.+-
T Consensus 461 -Dcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL--E--N~ivRsaAv~aLskf~ln~~d~~~-------~~sv~ 528 (898)
T COG5240 461 -DCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLIL--E--NNIVRSAAVQALSKFALNISDVVS-------PQSVE 528 (898)
T ss_pred -hcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH--h--hhHHHHHHHHHHHHhccCcccccc-------HHHHH
Confidence 12444556777777655443 22233 2245544431 1 111223445666666544444343 46677
Q ss_pred HHHHHHHcCCCCCCcccCchhhHHHHH
Q 002257 640 SMVSSIMADKNLEDGDIEPAPKLIEVV 666 (946)
Q Consensus 640 ~i~~~ll~~~~~~~~~~~~a~~ll~~i 666 (946)
.++.|++++. +++.+..|.-++..|
T Consensus 529 ~~lkRclnD~--DdeVRdrAsf~l~~~ 553 (898)
T COG5240 529 NALKRCLNDQ--DDEVRDRASFLLRNM 553 (898)
T ss_pred HHHHHHhhcc--cHHHHHHHHHHHHhh
Confidence 7888999755 455444555554443
No 74
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=13 Score=46.29 Aligned_cols=299 Identities=14% Similarity=0.176 Sum_probs=166.2
Q ss_pred cCHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRG---KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERM 373 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~---~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~ 373 (946)
+..+.+...|......++. .++...+..-+.+.. ..+.+...-....+-|..+.+++....+. ++..+
T Consensus 585 ~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~a----s~~~~s~~~~~~~slLdl~~~~a~~~~e~-----~vs~l 655 (1176)
T KOG1248|consen 585 KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELA----SDLDESVASFKTLSLLDLLIALAPVQTES-----QVSKL 655 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHh----ccchhhhhhHHHHHHHHHHHhhhccccch-----hHHHH
Confidence 5566666666655545442 333333333222222 11211113345556666666766665442 23333
Q ss_pred HHHhcccCCCC-CccchhHHHHHHHHhhhccc----cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccc
Q 002257 374 LVQHVFPEFSS-PVGHLRAKAAWVAGQYAHIN----FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 448 (946)
Q Consensus 374 l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~----f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~ 448 (946)
+ .+.|.+.+ ..+-+|.++..++...+... + ..+....+++.+...+++..-+++..++.+|..+++.. ..
T Consensus 656 ~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~-~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~--~~ 730 (1176)
T KOG1248|consen 656 F--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGL-VEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLL--SA 730 (1176)
T ss_pred H--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc--cH
Confidence 4 46677654 58889999999998886531 1 12567788888889998889999999999999999985 33
Q ss_pred ccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHH--Hhh-CCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 002257 449 EIRPILPQLLDEFFKLMNEVENED---LVFTLETIV--DKF-GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 522 (946)
Q Consensus 449 ~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv--~~~-~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 522 (946)
....+++..+...+=.+++.+... -..+|-.|. ..+ .+.=.| +...++..+ .++..+..++ +..+
T Consensus 731 e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnefl----~~Isagl~gd----~~~~ 801 (1176)
T KOG1248|consen 731 EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEFL----SIISAGLVGD----STRV 801 (1176)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHHH----HHHHhhhccc----HHHH
Confidence 444555556655555555544322 223333222 222 222123 222222222 2232221121 3333
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHH
Q 002257 523 AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEAL 600 (946)
Q Consensus 523 ~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~--~i~p~l~~l~~~l~~~~ 600 (946)
.+.. +-.+..++.-.++. .-....+.++..+...|.....+....|+..+..+++.-+ -++|....++|.++...
T Consensus 802 ~as~-Ivai~~il~e~~~~--ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls 878 (1176)
T KOG1248|consen 802 VASD-IVAITHILQEFKNI--LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS 878 (1176)
T ss_pred HHHH-HHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH
Confidence 3333 55566666544321 1122345677777888888888999999999999987653 45566667777777655
Q ss_pred hhhHhhhHhhhHHHHHHHHhc
Q 002257 601 ADWAIDFFPNILVPLDNYISR 621 (946)
Q Consensus 601 ~~~~~~~l~~~~~~L~~~i~~ 621 (946)
++......-.+-.+|+-++++
T Consensus 879 ~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 879 HDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 422222223333445555544
No 75
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.90 E-value=0.55 Score=48.84 Aligned_cols=167 Identities=14% Similarity=0.192 Sum_probs=96.3
Q ss_pred cccCHHHHHHHHHHHHHHhc-CcccHHHHHHHHH---HhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHH
Q 002257 295 DLYSPRTASMDFVSELVRKR-GKENLQKFIQFIV---GIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 370 (946)
Q Consensus 295 d~~s~R~aa~~ll~~l~~~~-~~~~l~~ll~~i~---~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l 370 (946)
..|+.|..|..-|..++... +....+.+.+.+. ..+.....+. +-..--.|+..++.++..+... +...+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~----Rs~v~~~A~~~l~~l~~~l~~~--~~~~~ 92 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL----RSKVSKTACQLLSDLARQLGSH--FEPYA 92 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-------HHHHHHHHHHHHHHHHGGG--GHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHhHh--HHHHH
Confidence 34889999999999998866 2333333444333 1221111111 3344556677788888877652 32222
Q ss_pred HHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHH-HHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-ccc
Q 002257 371 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLN 448 (946)
Q Consensus 371 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~-~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-~~~ 448 (946)
..+.+.++.-+.++..++|.+|..++..+.... + ....+ ...+...+.+.++.||..++..+..++.... ...
T Consensus 93 -~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~--~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 93 -DILLPPLLKKLGDSKKFIREAANNALDAIIESC--S--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp -HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred -HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC--C--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 333345555566788999999999998887632 2 23455 6777778889999999999999999999874 245
Q ss_pred ccccc--hHHHHHHHHHHHhhhhhhh
Q 002257 449 EIRPI--LPQLLDEFFKLMNEVENED 472 (946)
Q Consensus 449 ~l~p~--l~~il~~Ll~ll~~~~~e~ 472 (946)
.+... ++.+...+..++.+.+.+.
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~V 193 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEV 193 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHH
Confidence 55543 4778888888877665544
No 76
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.87 E-value=0.026 Score=43.83 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=38.6
Q ss_pred chhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhh
Q 002257 343 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 400 (946)
Q Consensus 343 ~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~ 400 (946)
|+.|.+|+.+||.++....+. ....+ +-+...+.+.++++++-+|..|||.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~--~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL--LQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH--HHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH--HHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999977654331 11112 22334555677888889999999999863
No 77
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=94.77 E-value=4.6 Score=50.30 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=14.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHhH
Q 002257 908 QTLEFQYQALANGVAQHADQRR 929 (946)
Q Consensus 908 ~~l~~~~~~~l~~~~~~~~~~~ 929 (946)
..++.++..+|...+..+=++|
T Consensus 727 ~~mdDe~m~~lD~~La~~Fk~r 748 (784)
T PF04931_consen 727 EDMDDEQMMALDEQLAAIFKER 748 (784)
T ss_pred cccCHHHHHHHHHHHHHHHHHH
Confidence 3578888888877776544444
No 78
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=4.5 Score=47.51 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHh
Q 002257 429 VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN 508 (946)
Q Consensus 429 V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~ 508 (946)
+|...-..+.+++.. ..+.+-|++|.+++.+++-..--|--..+..|..++..|+..+.|+..++...|...+..++.
T Consensus 713 iRsavrft~hRmI~~--lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~ 790 (980)
T KOG2021|consen 713 IRSAVRFTFHRMIPI--LGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIE 790 (980)
T ss_pred hHHHHHHHHHHHHHh--cchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 454444566777776 568899999999999977554444444567788899999988888888877766554444444
No 79
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.50 E-value=0.44 Score=49.58 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhh---hhhHHHHHHHHHHhhCCc
Q 002257 411 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE---NEDLVFTLETIVDKFGEE 487 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~---~e~l~~~L~~iv~~~~~~ 487 (946)
+..++..+..++.|....|...||.++..++... ...+.|+++.++..|+..+.+.. .+....+|..++...+
T Consensus 51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l--~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-- 126 (228)
T PF12348_consen 51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL--GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-- 126 (228)
T ss_dssp HH---HHHHH-S-HH---HHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--
Confidence 3355567777887776778889999999999984 56699999999999999987642 2445566777666443
Q ss_pred ccccHHHH-HHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHH--HHhhHHHHHHHhcccch
Q 002257 488 MAPYALGL-CQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ--IEPTLLPIMRRMLTTDG 564 (946)
Q Consensus 488 i~p~~~~l-~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~--l~~~l~p~i~~~l~~~~ 564 (946)
+...+ ...+. ...+ + .++..+..+++.+..++...+..+..+.. ..+.+.|.+..++....
T Consensus 127 ---~~~~~~~~~l~----~~~~----~-----Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~ 190 (228)
T PF12348_consen 127 ---YSPKILLEILS----QGLK----S-----KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDAD 190 (228)
T ss_dssp ---H--HHHHHHHH----HHTT----------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-
T ss_pred ---cHHHHHHHHHH----HHHh----C-----CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCC
Confidence 22233 22221 2221 1 23456778888888888887622222221 23568888888888888
Q ss_pred hhHHHHHHHHHHHHH
Q 002257 565 QEVFEEVLEIVSYMT 579 (946)
Q Consensus 565 ~~~~~~~l~ll~~l~ 579 (946)
.+..+.+-..+..+.
T Consensus 191 ~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 191 PEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777777664
No 80
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.46 E-value=12 Score=42.95 Aligned_cols=371 Identities=14% Similarity=0.131 Sum_probs=181.1
Q ss_pred hHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcch------h--hHHHHHHHHHHHHHhcccCCCcCcchHHHHHH-HHh
Q 002257 16 LLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD------Q--QVYGALFVLRILSRKYEFKSDEERTPVYRIVE-ETF 86 (946)
Q Consensus 16 ~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s------~--~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~-~~~ 86 (946)
.-....-.+++.|+.. |.-|..+++.+++.+.. + ..+..|.++..++++-.... .......... .+.
T Consensus 17 ~~~~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~--~~~~~~~y~~~~lv 92 (415)
T PF12460_consen 17 SNYERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK--QFEDNSWYFHRILV 92 (415)
T ss_pred hHHHHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc--ccchHHHHHHhHHH
Confidence 4455566677777765 45688888888887764 1 46899999999998754211 0111222222 266
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcc
Q 002257 87 HHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWG 166 (946)
Q Consensus 87 p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~ 166 (946)
|.+++...+....... ....++..+.++++.++.. +|..-+ .+.+.....+|... ....|.. ......
T Consensus 93 ~~l~~~~~~~~~~~~~--~~~~~L~~~~~l~~~iv~~-l~~~~q-~~~~~~~~~lf~~~-~~~~~~~--~~~~~~----- 160 (415)
T PF12460_consen 93 PRLFELALQASDQSSD--LDDRVLELLSRLINLIVRS-LSPEKQ-QEILDELYSLFLSP-KSFSPFQ--PSSSTI----- 160 (415)
T ss_pred HHHHHHHHhhcccccc--cchHHHHHHHHHHHHHHHh-CCHHHH-HHHHHHHHHHHccc-cccCCCC--cccccc-----
Confidence 7666655554322111 1133444555555444322 333221 12344444444410 0101100 000000
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhccCc
Q 002257 167 WWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKN 246 (946)
Q Consensus 167 ~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~ 246 (946)
+.-.++.+-.+..++.- -++.+. + +....+++...++..+.. ++.....+.+.+..++.+-
T Consensus 161 -~~~~~~~~~l~~~il~~--l~~~~~---------~--~~~~~ll~~l~~~~~~~~-----~~~~~~~~~~~la~LvNK~ 221 (415)
T PF12460_consen 161 -SEQQSRLVILFSAILCS--LRKDVS---------L--PDLEELLQSLLNLALSSE-----DEFSRLAALQLLASLVNKW 221 (415)
T ss_pred -ccccccHHHHHHHHHHc--CCcccC---------c--cCHHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHcCC
Confidence 01112333333434432 122111 0 012234444444443211 1455555666666665431
Q ss_pred hhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHH----HHHHHhcCcccHHHH
Q 002257 247 SMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV----SELVRKRGKENLQKF 322 (946)
Q Consensus 247 ~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll----~~l~~~~~~~~l~~l 322 (946)
..-. .+..++.... ... .. ....+.|..+...+ +++.-+. ......+
T Consensus 222 ~~~~----~l~~~l~~~~-~~~----------------------~~-~~~~~~~~~~~~~~~Wi~KaLv~R~-~~~~~~~ 272 (415)
T PF12460_consen 222 PDDD----DLDEFLDSLL-QSI----------------------SS-SEDSELRPQALEILIWITKALVMRG-HPLATEL 272 (415)
T ss_pred CChh----hHHHHHHHHH-hhh----------------------cc-cCCcchhHHHHHHHHHHHHHHHHcC-CchHHHH
Confidence 1111 2223333222 100 00 11234455555544 4444443 3333344
Q ss_pred HHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhh----cC--CcchHHHHHHHHHhcccCC----CCCccchhHH
Q 002257 323 IQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK----QT--EPYKSELERMLVQHVFPEF----SSPVGHLRAK 392 (946)
Q Consensus 323 l~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~----~~--~~~~~~l~~~l~~~v~p~l----~~~~~~lr~r 392 (946)
...+.+.+.+ ......+-.+++.+..... +. ...+.-..+.+-+.++|-+ +....-.|..
T Consensus 273 ~~~L~~lL~~----------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 273 LDKLLELLSS----------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred HHHHHHHhCC----------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 4444444432 2345555566666654421 11 1111112233334455543 2222235555
Q ss_pred HHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHH
Q 002257 393 AAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 464 (946)
Q Consensus 393 a~~~l~~~~~~~f~~~----~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~l 464 (946)
....++..-... |. ..+..++|.++++|.-++..|+..+..+|..++++ .++.+.+|+..++..|+++
T Consensus 343 yL~ALs~ll~~v--P~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~--~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 343 YLTALSHLLKNV--PKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE--APELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHhc
Confidence 566666654322 22 56788999999999877788999999999999999 4789999999999999875
No 81
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.26 E-value=11 Score=45.61 Aligned_cols=105 Identities=14% Similarity=0.149 Sum_probs=70.4
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHH-HHHHHh
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVVS 420 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~-~~~l~~ 420 (946)
|...|-.|++.+|.+... .+-..+..-|...++++++++|..|..++..+-.. +++..... ...+.+
T Consensus 105 N~~iR~~AlR~ls~l~~~---------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~ 172 (757)
T COG5096 105 NEEIRGFALRTLSLLRVK---------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILK 172 (757)
T ss_pred CHHHHHHHHHHHHhcChH---------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHH
Confidence 779999999999987754 12122334555678899999999999999888553 23444444 444444
Q ss_pred c-CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 002257 421 G-LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 463 (946)
Q Consensus 421 ~-L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ 463 (946)
. +.|+++.|...|..++..+.+. ...+|...+...+-+
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~e-----~a~~~~~~~~~~i~~ 211 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDPE-----LAHGYSLEVILRIPQ 211 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhchh-----hhhhHHHHHHHHhhh
Confidence 4 4589999999999988887655 234444444443333
No 82
>PRK09687 putative lyase; Provisional
Probab=94.26 E-value=0.15 Score=54.76 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=77.1
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
..+|.+|...|..++..-.. ..+.....+...+.. ++|..|.++..++|.+... .-+ .
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~~D--------~~~~VR~~a~~aLg~~~~~--------~ai-----~ 162 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPL-YSPKIVEQSQITAFD--------KSTNVRFAVAFALSVINDE--------AAI-----P 162 (280)
T ss_pred HHHHHHHHHHHhcccccccc-cchHHHHHHHHHhhC--------CCHHHHHHHHHHHhccCCH--------HHH-----H
Confidence 55788888888776432211 112223222232222 2899999999999866432 011 2
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 440 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~ 440 (946)
.+++.++++++.+|..|.+.+|++.. .++ .+.+.++..|.|++..||..|+.+|..+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~~---~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNKY---DNP----DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCCC---CCH----HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 34445678889999999999999832 122 5677788888999999999999999873
No 83
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=94.21 E-value=0.45 Score=50.14 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=67.5
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchH---HHHHHHHHhcccCCCC--CccchhHHHHHHHHhhhccccCCh--hHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKS---ELERMLVQHVFPEFSS--PVGHLRAKAAWVAGQYAHINFSDQ--NNFRKA 414 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~---~l~~~l~~~v~p~l~~--~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~ 414 (946)
+--.||-++.|+|.+|..-....+|+- -+++.+ ..+.+ .|--+-+.+-|++|..+.-+=-+| ....+.
T Consensus 170 ~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL-----~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqa 244 (526)
T COG5064 170 EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL-----GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQA 244 (526)
T ss_pred hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH-----HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHH
Confidence 457899999999999876332222211 122222 22333 333456688999999987441122 677889
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 415 LHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 415 ~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
++.+.+.+...+.-|-+-||.|+..+.+..
T Consensus 245 lpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 245 LPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 999999998888888899999999998874
No 84
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=19 Score=44.44 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=82.4
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcC-CCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVE-YKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 375 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~-~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~ 375 (946)
.-+|-+|+.-+..+..+.+......+++-+...++ |.+ ...|- |++.+++-+|..---......++-+.+.
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~-----p~e~~~aWH---gacLaLAELA~rGlLlps~l~dVvplI~ 426 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFN-----PAEDDSAWH---GACLALAELALRGLLLPSLLEDVVPLIL 426 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcC-----cCCchhHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 44788899999999988876666666665555332 222 12565 9999999888752111111123333333
Q ss_pred HhcccCCC----CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc-----CCCCCCchHHHHHHHHHHHHHh
Q 002257 376 QHVFPEFS----SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG-----LRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 376 ~~v~p~l~----~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~-----L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
.-+.-+-. +.---+|..||.++-.|+.. + ++..+..+++.+..+ +=|+++-+|-.|+.|++..+-.
T Consensus 427 kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-y-s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 427 KALHYDVRRGQHSVGQHVRDAACYVCWAFARA-Y-SPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhc-C-ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 22222211 23356999999888666542 2 333344455544433 4488899999999999987765
No 85
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=16 Score=43.48 Aligned_cols=330 Identities=15% Similarity=0.177 Sum_probs=168.2
Q ss_pred hcccCCCCC-ccchhHHHHHHHHhh-hccccCCh---hHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhccccccc
Q 002257 377 HVFPEFSSP-VGHLRAKAAWVAGQY-AHINFSDQ---NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEI 450 (946)
Q Consensus 377 ~v~p~l~~~-~~~lr~ra~~~l~~~-~~~~f~~~---~~~~~~~~~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~~~~~~l 450 (946)
.++..++++ ...+|-.+...+--. -++.|+.+ ..++.++..+.+.+.. ...--|++-...+..++.. ..+.+
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r--~~e~I 607 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER--VSEHI 607 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHhh
Confidence 334455554 455555555444443 33567544 3456666666666653 2334677778888888888 57899
Q ss_pred ccchHHHHHHHHHHHhhhhhhhH-----HHHHHHHHHhhCCc---ccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhH
Q 002257 451 RPILPQLLDEFFKLMNEVENEDL-----VFTLETIVDKFGEE---MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 522 (946)
Q Consensus 451 ~p~l~~il~~Ll~ll~~~~~e~l-----~~~L~~iv~~~~~~---i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 522 (946)
+|+...+++-+=.+=.+.+.+.+ ..+|..+|...+.. ..|++..+++.-+ ||+.. ++-.
T Consensus 608 ~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~------------D~~sP-~hv~ 674 (978)
T KOG1993|consen 608 APYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST------------DPSSP-EHVY 674 (978)
T ss_pred hHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc------------CCCCC-ceee
Confidence 99999998888777777777664 45677788887654 4444444433111 44211 1111
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCC-CCC-HHHHHHHHHHHHHH
Q 002257 523 AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-TIS-LEMWSLWPLMMEAL 600 (946)
Q Consensus 523 ~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~-~i~-p~l~~l~~~l~~~~ 600 (946)
+.-.-.+.=.+.++....-+.-+.. ++|.+.++++. ..+-++-+++++.+.+.... .+. ..-..+|..+...+
T Consensus 675 L~EDgmeLW~~~L~n~~~l~p~ll~----L~p~l~~~iE~-ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l 749 (978)
T KOG1993|consen 675 LLEDGMELWLTTLMNSQKLTPELLL----LFPHLLYIIEQ-STENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLL 749 (978)
T ss_pred hhhhHHHHHHHHHhcccccCHHHHH----HHHHHHHHHHh-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 1111111122333332222222223 34444444433 23456777888887665432 222 22235566665555
Q ss_pred hhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHH-HHHHHHcCCCCCCcccCchhhHHHHHHHHccc-------
Q 002257 601 ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWS-MVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG------- 672 (946)
Q Consensus 601 ~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~-i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~------- 672 (946)
.+-..+-+..+++++...+...+ +++. .+...++. ++.........+-. ...-..++..+...-|.
T Consensus 750 ~dvr~egl~avLkiveili~t~~--il~~---~~~~~~L~~lf~~I~~~~~yP~~-~~~yl~vvaRi~l~n~~~~msvlq 823 (978)
T KOG1993|consen 750 DDVRNEGLQAVLKIVEILIKTNP--ILGS---LLFSPLLSRLFLSIAENDKYPYV-MGEYLLVVARISLRNPSLFMSVLQ 823 (978)
T ss_pred HHhhHHHHHHHHHHHHHHHhhhH--HHHh---hhcchhhHHHHHHHHhCCCCchh-HHHHHHHHHHHHhcChHHHHHHHH
Confidence 54345667778888888777665 3321 12222222 11222222211110 01111222222222221
Q ss_pred ---CchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHHhHH
Q 002257 673 ---QVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQ 738 (946)
Q Consensus 673 ---~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~ 738 (946)
..+..+..++..++.+..+-..+..|......+++++..|-...+.. +..+++.|++.+.
T Consensus 824 t~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~------~~~I~nl~~e~L~ 886 (978)
T KOG1993|consen 824 TKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAV------LDSIMNLWFEVLS 886 (978)
T ss_pred hhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHH------HhHHHHHHHHHHH
Confidence 22344445555555555554455555555556666666643334433 3468899998887
No 86
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.80 E-value=1.1 Score=47.19 Aligned_cols=182 Identities=17% Similarity=0.218 Sum_probs=104.7
Q ss_pred CCC-CCccchhHHHHHHHHhhhccccCChhHHH--HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHH
Q 002257 381 EFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFR--KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 457 (946)
Q Consensus 381 ~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~~~--~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~i 457 (946)
.|+ +..|+++.+|+..+|..+...|. ++... -.++.+.+.|.++++.||..|..|+.++....+....++.|++.+
T Consensus 20 lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V 98 (254)
T PF04826_consen 20 LLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV 98 (254)
T ss_pred HHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 445 47899999999999998764442 23322 467888888999999999999999999987766677788888888
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHh
Q 002257 458 LDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILES 537 (946)
Q Consensus 458 l~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~ 537 (946)
++..... ..+.+.-+..|..+..- . +.+....++..-+..+.+++.++. . .....++. ++..
T Consensus 99 c~~~~s~--~lns~~Q~agLrlL~nL-t--v~~~~~~~l~~~i~~ll~LL~~G~-------~--~~k~~vLk----~L~n 160 (254)
T PF04826_consen 99 CEETVSS--PLNSEVQLAGLRLLTNL-T--VTNDYHHMLANYIPDLLSLLSSGS-------E--KTKVQVLK----VLVN 160 (254)
T ss_pred HHHHhcC--CCCCHHHHHHHHHHHcc-C--CCcchhhhHHhhHHHHHHHHHcCC-------h--HHHHHHHH----HHHH
Confidence 8777552 12222222333333221 1 112112222222334456665421 1 11222222 3344
Q ss_pred hcCChhHHHHHH-hhHHHHHHHhcccc-hhhHHHHHHHHHHHHHhc
Q 002257 538 VSRLPHLFVQIE-PTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFF 581 (946)
Q Consensus 538 ~~~~~~~~~~l~-~~l~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~ 581 (946)
++.+|.....+- ...++-+...++.+ ..+.+-.++.+...+.+.
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 455666544432 33455555555554 346666666666666543
No 87
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.73 E-value=28 Score=44.67 Aligned_cols=154 Identities=14% Similarity=0.179 Sum_probs=98.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh-hHHHHHHHHHHh
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVS 420 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~-~~~~~~~~~l~~ 420 (946)
.....+.|-.++-.++..- ++...++.++ +.|+..+..+.+-||.+|..|++...++. +. -....+-.++-.
T Consensus 790 ~~~d~~~a~li~~~la~~r----~f~~sfD~yL-k~Il~~l~e~~ialRtkAlKclS~ive~D--p~vL~~~dvq~~Vh~ 862 (1692)
T KOG1020|consen 790 RFADDDDAKLIVFYLAHAR----SFSQSFDPYL-KLILSVLGENAIALRTKALKCLSMIVEAD--PSVLSRPDVQEAVHG 862 (1692)
T ss_pred ccccchhHHHHHHHHHhhh----HHHHhhHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHhcC--hHhhcCHHHHHHHHH
Confidence 4556666666655555431 2323455555 56777788888999999999999998743 21 234567788888
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH-----------HHHhhh-----hhhhHHHHHHHHHHhh
Q 002257 421 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF-----------KLMNEV-----ENEDLVFTLETIVDKF 484 (946)
Q Consensus 421 ~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll-----------~ll~~~-----~~e~l~~~L~~iv~~~ 484 (946)
.+.|...-||.+|..-+.+|+-. .++.+..|...|.++++ +++.+. +...++.+...++.+.
T Consensus 863 R~~DssasVREAaldLvGrfvl~--~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 863 RLNDSSASVREAALDLVGRFVLS--IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRV 940 (1692)
T ss_pred hhccchhHHHHHHHHHHhhhhhc--cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHh
Confidence 99999999999999999999876 35666666666666553 222221 1223455556666666
Q ss_pred CCcccccHHHHHHHHHHHHHHHHh
Q 002257 485 GEEMAPYALGLCQNLAAAFWRCMN 508 (946)
Q Consensus 485 ~~~i~p~~~~l~~~L~~~~~~~~~ 508 (946)
.++= ..+-.-...+|+.+|=
T Consensus 941 ~DEE----g~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 941 NDEE----GNIKKLVRETFLKLWF 960 (1692)
T ss_pred ccch----hHHHHHHHHHHHHHhc
Confidence 5431 0122223456777784
No 88
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=25 Score=43.96 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhh-hhcC--CcchHHHHHHH
Q 002257 298 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK-LKQT--EPYKSELERML 374 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~-l~~~--~~~~~~l~~~l 374 (946)
+....-+.+|..++...|+-.++.+-.++ ..+.. +....|-+.+-++|-+... +.+. .+....+..-+
T Consensus 290 ~g~k~v~~fL~elS~~~P~l~~~~l~~lv-~lld~--------es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~ 360 (1251)
T KOG0414|consen 290 AGPKIVGNFLVELSERVPKLMLRQLTLLV-DLLDS--------ESYTLRNAVLEICANLVASELRDEELEEMSKSLRDEL 360 (1251)
T ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHHHH-HhcCC--------chHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 33444578888888877664443333222 23322 3778899988888877654 3321 11112232323
Q ss_pred HHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc-cc
Q 002257 375 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR-PI 453 (946)
Q Consensus 375 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~-p~ 453 (946)
..++...+.+-++++|.++..+..+.....-.+...+..++..++..+.|.+..||.+|+.-+..++...+.....+ .-
T Consensus 361 le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~ 440 (1251)
T KOG0414|consen 361 LELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDD 440 (1251)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 34455556788999999999999998664433556789999999999999999999999999999998753111111 12
Q ss_pred hHHHHHHHHHHHhh
Q 002257 454 LPQLLDEFFKLMNE 467 (946)
Q Consensus 454 l~~il~~Ll~ll~~ 467 (946)
+...++.-++-+++
T Consensus 441 ~~~~~E~~~~~~e~ 454 (1251)
T KOG0414|consen 441 LRAKLEKELQKLEE 454 (1251)
T ss_pred hhhhHHHHHHhhhh
Confidence 23346666666653
No 89
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.61 E-value=0.27 Score=42.25 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=54.4
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+|..|..++.++|.+... ...+.+. ..++++++.+|..|++.+|++.+ .+.++.+.+.
T Consensus 13 ~~~vr~~a~~~L~~~~~~---------~~~~~L~----~~l~d~~~~vr~~a~~aL~~i~~---------~~~~~~L~~~ 70 (88)
T PF13646_consen 13 DPQVRAEAARALGELGDP---------EAIPALI----ELLKDEDPMVRRAAARALGRIGD---------PEAIPALIKL 70 (88)
T ss_dssp SHHHHHHHHHHHHCCTHH---------HHHHHHH----HHHTSSSHHHHHHHHHHHHCCHH---------HHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH---------hHHHHHH----HHHcCCCHHHHHHHHHHHHHhCC---------HHHHHHHHHH
Confidence 899999999999933221 2223333 34478999999999999998853 3466777777
Q ss_pred CCC-CCCchHHHHHHHHH
Q 002257 422 LRD-PELPVRVDSVFALR 438 (946)
Q Consensus 422 L~d-~~~~V~~~Aa~Al~ 438 (946)
+.+ ++..||..|+.||.
T Consensus 71 l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTC-SSHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhcC
Confidence 765 56678999999874
No 90
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.59 E-value=0.072 Score=35.73 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 414 ALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 414 ~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
+++.++++++|++..||..|+.||..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478888999999999999999999998864
No 91
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.44 E-value=3.1 Score=41.30 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=56.8
Q ss_pred ccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHH
Q 002257 386 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 465 (946)
Q Consensus 386 ~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll 465 (946)
+|.+|.-++.++|-++- .| +.......+.+..+|.|+++.||..|..+|..++... .-.++ +.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~-r~--~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCI-RY--PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED--MIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHH-hC--cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--ceeeh---hhhhHHHHHHH
Confidence 57899999999998864 33 3578889999999999999999999999999998762 22222 34556666666
Q ss_pred hh
Q 002257 466 NE 467 (946)
Q Consensus 466 ~~ 467 (946)
.+
T Consensus 73 ~D 74 (178)
T PF12717_consen 73 VD 74 (178)
T ss_pred cC
Confidence 44
No 92
>PRK09687 putative lyase; Provisional
Probab=93.37 E-value=1.7 Score=46.63 Aligned_cols=116 Identities=10% Similarity=-0.020 Sum_probs=74.8
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+...|.++..+++.+... .+-. .+...++++++.+|..|+|.+|++.. +......+++.+...
T Consensus 36 d~~vR~~A~~aL~~~~~~---------~~~~----~l~~ll~~~d~~vR~~A~~aLg~lg~----~~~~~~~a~~~L~~l 98 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ---------DVFR----LAIELCSSKNPIERDIGADILSQLGM----AKRCQDNVFNILNNL 98 (280)
T ss_pred CHHHHHHHHHHHHhcCcc---------hHHH----HHHHHHhCCCHHHHHHHHHHHHhcCC----CccchHHHHHHHHHH
Confidence 778999999999876532 1111 22334568899999999999999864 111245677777776
Q ss_pred -CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 002257 422 -LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI 480 (946)
Q Consensus 422 -L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~i 480 (946)
+.|++..||.+|+.||..+.... . ...+.+++.+...+...+...-..++..+
T Consensus 99 ~~~D~d~~VR~~A~~aLG~~~~~~--~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 99 ALEDKSACVRASAINATGHRCKKN--P----LYSPKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcccccc--c----ccchHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 57899999999999999875432 1 12344555555555443333333444444
No 93
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.22 E-value=6.4 Score=41.69 Aligned_cols=234 Identities=15% Similarity=0.215 Sum_probs=134.4
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhH--HHHHHHHhhhccccCChhHHHHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRA--KAAWVAGQYAHINFSDQNNFRKALHSVV 419 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~--ra~~~l~~~~~~~f~~~~~~~~~~~~l~ 419 (946)
++..|.-|+..++.+...+....--..++ .++.++...-+.+ ++-++. +++..+-+... | +.+....+++.+.
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev-~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~--~-~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEV-QVLLDFFCSRLDD-HACVQPALKGLLALVKMKN--F-SPESAVKILRSLF 86 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHH-HHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcC--C-ChhhHHHHHHHHH
Confidence 78999999999999888875321001122 3344444444443 333322 23333333332 3 3456788888888
Q ss_pred hcCCCC--CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh-hhhhhhHH---HHHHHHHHhhCCcccccHH
Q 002257 420 SGLRDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN-EVENEDLV---FTLETIVDKFGEEMAPYAL 493 (946)
Q Consensus 420 ~~L~d~--~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~-~~~~e~l~---~~L~~iv~~~~~~i~p~~~ 493 (946)
+...-+ ...+|...-.-+..++++. .+.++..-...+.++++++. |.+...++ ..+..++..+. +.+++.
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e 162 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAE 162 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHH
Confidence 876533 3448888888888888873 45566666778888887774 34444444 44555566665 366777
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHH
Q 002257 494 GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLE 573 (946)
Q Consensus 494 ~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ 573 (946)
++...+...|--..+...+|| ..+.+..+-..+...+.+ + +.+.+.++|.+..-|.......-.++++
T Consensus 163 ~lFd~~~cYFPI~F~pp~~dp-----~~IT~edLk~~L~~cl~s---~----~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 163 DLFDVFSCYFPITFRPPPNDP-----YGITREDLKRALRNCLSS---T----PLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred HHHHHhhheeeeeeeCCCCCC-----CCCCHHHHHHHHHHHhcC---c----HhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 776655443322222111222 123333444444343333 3 3456778999988888877667778888
Q ss_pred HHHHHHhc-C-CCCCHHHHHHHHHH
Q 002257 574 IVSYMTFF-S-PTISLEMWSLWPLM 596 (946)
Q Consensus 574 ll~~l~~~-~-~~i~p~l~~l~~~l 596 (946)
.+..++.. . ..+.|.+..+|..+
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 88777643 2 24444444555444
No 94
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.12 E-value=2.9 Score=40.92 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=62.1
Q ss_pred hhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHh
Q 002257 126 PKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKN 205 (946)
Q Consensus 126 p~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~ 205 (946)
++.| .++-..|++.+..+++.+-| ..+++-++..+.++|.+-+. +..+......+
T Consensus 58 ~e~l--~~~~~~W~~~Ll~~L~~~~~----------------~~~~~~ai~~L~~l~~~~~~-------~p~l~Rei~tp 112 (165)
T PF08167_consen 58 WEIL--LSHGSQWLRALLSILEKPDP----------------PSVLEAAIITLTRLFDLIRG-------KPTLTREIATP 112 (165)
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCC----------------HHHHHHHHHHHHHHHHHhcC-------CCchHHHHhhc
Confidence 5566 34788999999999987422 35778899999999986321 12244446678
Q ss_pred hHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcc
Q 002257 206 YAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS 244 (946)
Q Consensus 206 ~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~ 244 (946)
.+|.|++.+++++.. ......+++.+..++.
T Consensus 113 ~l~~~i~~ll~l~~~--------~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 113 NLPKFIQSLLQLLQD--------SSCPETALDALATLLP 143 (165)
T ss_pred cHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHH
Confidence 899999999988853 3456677778887765
No 95
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.98 E-value=12 Score=40.73 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHH
Q 002257 230 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE 309 (946)
Q Consensus 230 ~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~ 309 (946)
..+..+++-+..++..+.....+..+...++..+. ..+. +. .+ .-+..|..++.-
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~-k~lk------------------kg-~~-----~E~~lA~~~l~L 112 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLPDFVEDRRETLLDALL-KSLK------------------KG-KS-----EEQALAARALAL 112 (309)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHhc------------------cC-CH-----HHHHHHHHHHHH
Confidence 44555566555555555455555555555555443 2221 10 00 113445565655
Q ss_pred HHHhcC-----cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-CCcch---HHHHHHHHHhccc
Q 002257 310 LVRKRG-----KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYK---SELERMLVQHVFP 380 (946)
Q Consensus 310 l~~~~~-----~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-~~~~~---~~l~~~l~~~v~p 380 (946)
++-..| ..++..+.+.+.+.+.... ...+.|-+++.++|.++..... ...+. ..++.+|... .+
T Consensus 113 l~ltlg~g~~~~ei~~~~~~~L~~~l~d~s------~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~-~~ 185 (309)
T PF05004_consen 113 LALTLGAGEDSEEIFEELKPVLKRILTDSS------ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLS-IL 185 (309)
T ss_pred HhhhcCCCccHHHHHHHHHHHHHHHHhCCc------cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH-hc
Confidence 555543 3455566666666665421 2457788999999998876443 22222 2333222221 12
Q ss_pred CCCC--------CccchhHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 381 EFSS--------PVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 381 ~l~~--------~~~~lr~ra~~~l~~~~~~~f~~~----~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
.... +.+-+.+.|+..-|-..... +. ......++.+...|.+++.-||+.|..||.-+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~--~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 186 KSDGNAPVVAAEDDAALVAAALSAWALLLTTL--PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CcCCCcccccCCCccHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 2211 23567777764444443211 22 456678888999999889999999999999988864
No 96
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.94 E-value=0.078 Score=48.49 Aligned_cols=87 Identities=16% Similarity=0.229 Sum_probs=59.0
Q ss_pred ccCCCCCccchhHHHHHHHHhhhccccCCh---hHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc-c
Q 002257 379 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQ---NNFR-KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP-I 453 (946)
Q Consensus 379 ~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~---~~~~-~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p-~ 453 (946)
+..+.++++.+|..++++++.++... ++ .... .+++.+++.|.+++..|+..|+.+|.+++.... +...- .
T Consensus 13 ~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~ 88 (120)
T cd00020 13 VSLLSSSDENVQREAAWALSNLSAGN--NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIVL 88 (120)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHHH
Confidence 33445667899999999999997631 11 2222 678888999998889999999999999988742 11111 1
Q ss_pred hHHHHHHHHHHHhhhh
Q 002257 454 LPQLLDEFFKLMNEVE 469 (946)
Q Consensus 454 l~~il~~Ll~ll~~~~ 469 (946)
-..++..|.++++..+
T Consensus 89 ~~g~l~~l~~~l~~~~ 104 (120)
T cd00020 89 EAGGVPKLVNLLDSSN 104 (120)
T ss_pred HCCChHHHHHHHhcCC
Confidence 1235566666665543
No 97
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=92.86 E-value=18 Score=44.06 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=89.7
Q ss_pred ccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHH
Q 002257 296 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 375 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~ 375 (946)
-+++|.+|+..+..++..+|.... ....+...|....+ .+|+.|-+.+.++..++..+.+. -+..+ |.
T Consensus 531 v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q-----~~y~~R~t~l~si~~la~v~g~e-i~~~~----Ll 598 (759)
T KOG0211|consen 531 VYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQ-----DNYLVRMTTLFSIHELAEVLGQE-ITCED----LL 598 (759)
T ss_pred HHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcC-----cccchhhHHHHHHHHHHHHhccH-HHHHH----Hh
Confidence 378999999999999999984322 11112222222111 17999999999999999886541 01112 22
Q ss_pred HhcccCCCCCccchhHHHHHHHHhhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 376 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 376 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~-~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
..+.....++.|-+|-.++..+-.+.... .+ ..-..+++++...-.|++.=||+.|..|+..+...
T Consensus 599 p~~~~l~~D~vanVR~nvak~L~~i~~~L--~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 599 PVFLDLVKDPVANVRINVAKHLPKILKLL--DESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHhccCCchhhhhhHHHHHHHHHhhc--chHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 23333345788999999999998886632 33 34445666666666699999999999998876554
No 98
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.51 E-value=12 Score=40.12 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=64.9
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCC---------------------------------ccc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP---------------------------------VGH 388 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~---------------------------------~~~ 388 (946)
.|...+++-.+-..+.............++.++..++-|.|... ++.
T Consensus 15 ~Wtt~~s~~ia~~il~~~~~~~~~~~~~~~~~L~~~lrPlf~k~~~~~~t~~gr~~l~P~~~~~~~~~~~~~~~WK~~~~ 94 (282)
T PF10521_consen 15 PWTTEESAQIATSILEQFLSLSESPESIIERILIDTLRPLFSKSKNPRITSSGRKGLRPKLGFSFDDDELQRQPWKSNPG 94 (282)
T ss_pred CCccHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHhHHhcCCCCcccccccccccCCCCcccccccccccCCcccCCc
Confidence 57766666665555544332111222345566666666665421 123
Q ss_pred hh-HHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 002257 389 LR-AKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 445 (946)
Q Consensus 389 lr-~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~ 445 (946)
++ ..-+|++.+-.+... -.+++.-+++.++..+.|.+..+|..+|.+|..|+....
T Consensus 95 ~~~~~l~w~v~~~~~~~~-i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRPW-ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred ccHHHHHHHHHhcCCcch-HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 34 344688862222111 116788899999999999999999999999999999764
No 99
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.50 E-value=0.17 Score=43.54 Aligned_cols=68 Identities=25% Similarity=0.379 Sum_probs=50.6
Q ss_pred CCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 002257 383 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 462 (946)
Q Consensus 383 ~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll 462 (946)
+++++.+|..|++++|++.. ..+++.++..++|++..||..|+.||..+= -+..++.|.
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~ 68 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGD---------PEAIPALIELLKDEDPMVRRAAARALGRIG------------DPEAIPALI 68 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------HHHTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CHHHHHHHH
Confidence 57899999999999986532 256777788889999999999999999762 134566666
Q ss_pred HHHhhhhhh
Q 002257 463 KLMNEVENE 471 (946)
Q Consensus 463 ~ll~~~~~e 471 (946)
.++.+.+..
T Consensus 69 ~~l~~~~~~ 77 (88)
T PF13646_consen 69 KLLQDDDDE 77 (88)
T ss_dssp HHHTC-SSH
T ss_pred HHHcCCCcH
Confidence 666654433
No 100
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=31 Score=41.61 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHHhccccc-cccc--chHHHHHHHHHH
Q 002257 411 FRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEACRDLN-EIRP--ILPQLLDEFFKL 464 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~-~~V~~~Aa~Al~~~~~~~~~~~-~l~p--~l~~il~~Ll~l 464 (946)
...+++.++..|+++. .-+...||+||..+++...... .+.- -+|-++++|+.+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I 266 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI 266 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh
Confidence 5678899999998764 4599999999999999875222 2222 355566666543
No 101
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.43 E-value=20 Score=39.35 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=80.0
Q ss_pred cchHHHHHHHHHHHh----hhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHH
Q 002257 452 PILPQLLDEFFKLMN----EVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGC 527 (946)
Q Consensus 452 p~l~~il~~Ll~ll~----~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 527 (946)
.+++++++.++.--+ ..-.-.+..++.+++.+.++.+.|+.+.+...+......++.+ |- ++.+-.+...
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~---d~---~~yPe~r~~f 140 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINK---DF---EEYPEHRVNF 140 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSS---TS---SSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh---hh---hhChHHHHHH
Confidence 445555554443333 3334457788999999999999999999999988877777752 21 2445566777
Q ss_pred HHHHHHHHHhhcCChhHHHHH----HhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC
Q 002257 528 LRAISTILESVSRLPHLFVQI----EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 582 (946)
Q Consensus 528 l~ti~~ll~~~~~~~~~~~~l----~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~ 582 (946)
+..+..+++.. +..+..+ -..++..+...++....+..+.+++++..++.+.
T Consensus 141 f~LL~~i~~~~---f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 141 FKLLRAINEHC---FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHHHHHHH---THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 88787887764 1112222 1234455555666667788888999888887653
No 102
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=36 Score=41.23 Aligned_cols=194 Identities=11% Similarity=0.157 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhH
Q 002257 473 LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTL 552 (946)
Q Consensus 473 l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l 552 (946)
+..+++..-..++++ +...|...+.+....++.+| +.-...-+|+=.+.++...++..- ..-.+.+
T Consensus 444 iSD~~~~~Y~ilgd~-------ll~~L~~~l~q~~aa~d~~p----~s~~~tEaci~~~~sva~~~~~t~---~~~i~rl 509 (982)
T KOG2022|consen 444 ISDLLMSSYSILGDG-------LLDFLIDTLEQALAAGDEDP----DSLNRTEACIFQFQSVAEYLGETE---STWIPRL 509 (982)
T ss_pred HHHHHHHHHHHHhHH-------HHHHHHHHHHHhhhccCCCc----hHHHHHHHHHHHHHHHHhhcCcch---hHHHHHH
Confidence 345555555555544 33444544445544333344 332223344444455555554321 1112223
Q ss_pred HHHHHHh-cccchhhHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCccccc
Q 002257 553 LPIMRRM-LTTDGQEVFEEVLEIVSYMTFFSP----TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL 627 (946)
Q Consensus 553 ~p~i~~~-l~~~~~~~~~~~l~ll~~l~~~~~----~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l 627 (946)
+.+...+ +......+...+.++++++....+ .++|.+..+|..+.+ +........-|+.+-.-++.++.
T Consensus 510 ~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~------sk~s~q~i~tl~tlC~~C~~~L~ 583 (982)
T KOG2022|consen 510 FETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN------SKESEQAISTLKTLCETCPESLD 583 (982)
T ss_pred HHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC------chHHHHHHHHHHHHHHhhhhhCc
Confidence 3332222 111245788888999998876543 455555444443321 23333444446776677777776
Q ss_pred ccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcc-cCchhchHHHHHHHHHHHHh
Q 002257 628 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCK-GQVDHWVEPYLRITVERLRR 691 (946)
Q Consensus 628 ~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~-~~~~~~l~~il~~~~~~L~~ 691 (946)
+|+..++.++..++...+..+++.....+-++-++.... +....|+..++...+..++.
T Consensus 584 -----py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~ 643 (982)
T KOG2022|consen 584 -----PYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEI 643 (982)
T ss_pred -----hHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHH
Confidence 899999999999997666777777777888888887775 35677888888888887754
No 103
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.12 E-value=49 Score=39.60 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=82.0
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+...|--++.-+...|..- +++.....+.++-+..+++|.+|+-|.-..|... -+.....+..-+..+
T Consensus 62 dlelKKlvyLYl~nYa~~~-------P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-----v~~i~ey~~~Pl~~~ 129 (734)
T KOG1061|consen 62 DLELKKLVYLYLMNYAKGK-------PDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-----VDKITEYLCDPLLKC 129 (734)
T ss_pred CchHHHHHHHHHHHhhccC-------chHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-----ehHHHHHHHHHHHHh
Confidence 5666666666555555431 2333445667777888999999999998886553 235777888899999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIV 481 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv 481 (946)
+.|.+..||..|+.+...+.... .+...+ ..++..|-.++...+...+..++.++.
T Consensus 130 l~d~~~yvRktaa~~vakl~~~~--~~~~~~--~gl~~~L~~ll~D~~p~VVAnAlaaL~ 185 (734)
T KOG1061|consen 130 LKDDDPYVRKTAAVCVAKLFDID--PDLVED--SGLVDALKDLLSDSNPMVVANALAALS 185 (734)
T ss_pred ccCCChhHHHHHHHHHHHhhcCC--hhhccc--cchhHHHHHHhcCCCchHHHHHHHHHH
Confidence 99999999999999999988764 222221 234444444454333344555555553
No 104
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.85 E-value=16 Score=43.88 Aligned_cols=172 Identities=13% Similarity=0.204 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHH---HHHHhhCCc
Q 002257 411 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLE---TIVDKFGEE 487 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~---~iv~~~~~~ 487 (946)
-.+.++-.+..+.|+.+|+|.+|..-|..+++.......+.+ ..++...+..+..-+.=....++. ++++.+.+.
T Consensus 725 ~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~--ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~ 802 (982)
T KOG4653|consen 725 DIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG--EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED 802 (982)
T ss_pred cHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH--HHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh
Confidence 345588888999999999999999999999997543344433 356666666665544333456666 566666665
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCC-CCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhh
Q 002257 488 MAPYALGLCQNLAAAFWRCMNTAEAD-EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQE 566 (946)
Q Consensus 488 i~p~~~~l~~~L~~~~~~~~~~~~~d-~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~ 566 (946)
+.| .|...+.. +..+. + + .....| ++|..++++.++ +...+...+...+...+..+...
T Consensus 803 il~-------dL~e~Y~s---~k~k~~~----d-~~lkVG--Eai~k~~qa~Ge---l~~~y~~~Li~tfl~gvrepd~~ 862 (982)
T KOG4653|consen 803 ILP-------DLSEEYLS---EKKKLQT----D-YRLKVG--EAILKVAQALGE---LVFKYKAVLINTFLSGVREPDHE 862 (982)
T ss_pred hHH-------HHHHHHHh---cccCCCc----c-ceehHH--HHHHHHHHHhcc---HHHHHHHHHHHHHHHhcCCchHH
Confidence 443 34332222 11111 1 1 122223 888888888764 33444444555555555555567
Q ss_pred HHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhH
Q 002257 567 VFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWA 604 (946)
Q Consensus 567 ~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~~~ 604 (946)
+...++..++.+.... ..++..+.+++..+......++
T Consensus 863 ~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~ 901 (982)
T KOG4653|consen 863 FRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDG 901 (982)
T ss_pred HHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCC
Confidence 7888888888877654 4677766688877777765443
No 105
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=89.50 E-value=27 Score=42.35 Aligned_cols=349 Identities=11% Similarity=0.079 Sum_probs=155.5
Q ss_pred HhHHHHHHHHHHhhhhc-CCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhH-HHHHHHHHHhcCC
Q 002257 346 KDGALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN-FRKALHSVVSGLR 423 (946)
Q Consensus 346 keaal~alg~ia~~l~~-~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~-~~~~~~~l~~~L~ 423 (946)
-.++++++..+|+...- .+-...++-..| +..|.+.+.-+..-+..|+.+.+-..-+...+ -..+++.+.+.+.
T Consensus 266 lrv~~~lLlNLAed~~ve~kM~~~~iV~~L----v~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVELKMVNKGIVSLL----VKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHhcChHHHHHHHhcCCHHHH----HHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 34777888888876431 110111111222 23345556667777888888887522111122 2357888888888
Q ss_pred CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh-HHHHHHHHHHhhCCcccccHH--HHHHHHH
Q 002257 424 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVDKFGEEMAPYAL--GLCQNLA 500 (946)
Q Consensus 424 d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~-l~~~L~~iv~~~~~~i~p~~~--~l~~~L~ 500 (946)
+++..++..|..+|.++..+.+....+.. ..++..|..++....... ...+|..+.. .++..+... +.++.++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~~~~~val~iLy~LS~--dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDPNFREVALKILYNLSM--DDEARSMFAYTDCIPQLM 417 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCCchHHHHHHHHHHhcc--CHhhHHHHhhcchHHHHH
Confidence 77777888899999988776543332221 013444555554322211 2222222210 111111100 2233333
Q ss_pred HHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHH--hhHHHHHHHhcccchhhHHHHHHHHHHHH
Q 002257 501 AAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIE--PTLLPIMRRMLTTDGQEVFEEVLEIVSYM 578 (946)
Q Consensus 501 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~--~~l~p~i~~~l~~~~~~~~~~~l~ll~~l 578 (946)
..+.. +. ++ .-.. +.+ .++..+..++...+.+. +.+-.++..+++... +-.+.++.++
T Consensus 418 ~~Ll~----~~-~~--~v~~--------eli-aL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNi 477 (708)
T PF05804_consen 418 QMLLE----NS-EE--EVQL--------ELI-ALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNI 477 (708)
T ss_pred HHHHh----CC-Cc--cccH--------HHH-HHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHH
Confidence 22211 11 11 0011 111 12222222222222221 122233333333221 1234455555
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHhh-hHhhhHhhhHHHHHHHHhcCc--ccccccCCCchHHHHHHHHHHHHcCCCCCCcc
Q 002257 579 TFFSPTISLEMWSLWPLMMEALAD-WAIDFFPNILVPLDNYISRGT--AHFLTCKEPDYQQSLWSMVSSIMADKNLEDGD 655 (946)
Q Consensus 579 ~~~~~~i~p~l~~l~~~l~~~~~~-~~~~~l~~~~~~L~~~i~~~~--~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~ 655 (946)
..+.++.-..+......+...+.. .+.++.-+++.+|.|.-..+. ..+++ + ..++..+.+.|.+...+++-
T Consensus 478 S~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~--~----~~llp~L~~~L~~g~~~dDl 551 (708)
T PF05804_consen 478 SQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQ--E----YNLLPWLKDLLKPGASEDDL 551 (708)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHH--h----CCHHHHHHHHhCCCCCChHH
Confidence 544322222222333444444332 235566677777777543221 11221 1 12445556666443333322
Q ss_pred cCchhhHHHHHHHHcccCchhchH--HHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHH
Q 002257 656 IEPAPKLIEVVFQNCKGQVDHWVE--PYLRITVERLRR-AEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFN 731 (946)
Q Consensus 656 ~~~a~~ll~~il~~~~~~~~~~l~--~il~~~~~~L~~-~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~ 731 (946)
...+..+++++... ...++.+. +++..++.-|.. .+...+...++++|-+.+.+.+. --.++.+.++...++.
T Consensus 552 ~LE~Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-r~~ll~~~~~~~ylid 627 (708)
T PF05804_consen 552 LLEVVILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-REVLLKETEIPAYLID 627 (708)
T ss_pred HHHHHHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-HHHHHhccchHHHHHH
Confidence 23334444433321 12233332 566666666655 44566777788888888877543 2345555444444443
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.48 E-value=46 Score=39.85 Aligned_cols=200 Identities=12% Similarity=0.145 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCc
Q 002257 409 NNFRKALHSVVSGLRDPELP-VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE 487 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d~~~~-V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~ 487 (946)
+.....++-++....+.-++ =|-.|+++|+.|.+... .+....-++++++.|=. ...+.|.+..+|+++...+..+
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR-~~Vga~Gmk~li~vL~~--D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYR-EEVGAQGMKPLIQVLQR--DYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH-HHHHHcccHHHHHHHhh--ccCCHHHHHHHHHHHHHHHhcC
Confidence 45566667777666543333 58889999999988752 23333444444444321 1135566778888876555322
Q ss_pred cc------c-cHHHHHHHH----------HHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHH--
Q 002257 488 MA------P-YALGLCQNL----------AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-- 548 (946)
Q Consensus 488 i~------p-~~~~l~~~L----------~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l-- 548 (946)
=. + -+.++-..+ +..++..|++ ..-..+.+-++.++.++..-. +++-..+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~---------~DF~VR~~aIqLlsalls~r~--~e~q~~ll~ 163 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE---------FDFHVRLYAIQLLSALLSCRP--TELQDALLV 163 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh---------hchhhhhHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 00 0 122222222 2233344432 111234445555666665421 1111111
Q ss_pred HhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHHhhh----HhhhHhhhHHHHHHHHhcC
Q 002257 549 EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM--WSLWPLMMEALADW----AIDFFPNILVPLDNYISRG 622 (946)
Q Consensus 549 ~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l--~~l~~~l~~~~~~~----~~~~l~~~~~~L~~~i~~~ 622 (946)
.+.-+.-+...|.........+++-++..+++..+.|-..+ -.+|..|++.+... |.-.+.+++-+|.|.+++.
T Consensus 164 ~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 11112222233333334566788889999987766655443 37888888887632 2346778888888887764
No 107
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.29 E-value=1.5 Score=38.07 Aligned_cols=72 Identities=26% Similarity=0.445 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHH---HHHHHHHHhhCCc
Q 002257 413 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEE 487 (946)
Q Consensus 413 ~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~~~~~ 487 (946)
+.++.++..++|+.+|||.+|..-|+.++.... .-...++.++..++..++.-|.=... .++..++..+.+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 456777888999999999999999999999863 33345677888888777654332223 4455555555443
No 108
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.89 E-value=50 Score=38.90 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCc----chHHHHHHHHH
Q 002257 301 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP----YKSELERMLVQ 376 (946)
Q Consensus 301 ~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~----~~~~l~~~l~~ 376 (946)
++...|+..|++-.|.-++.. +..+...|.+ +....|-+.+-+.|.+.....+... |...+.. +..
T Consensus 280 k~islFl~kls~l~p~i~lrq-~~~~~~LLds--------es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~-Lv~ 349 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQ-YEHFDELLDS--------ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLND-LVG 349 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHH-HHHHHHHhcc--------cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHH-HHH
Confidence 344567777777665544433 3334455543 2677888888888888777654332 2223322 334
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
.+..-|.+.+|+.|..|+.++.+..+..-+.+.....+...+..+++|...+||-.|..-+..++-.
T Consensus 350 ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 350 LLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 4445577899999999999999987643333456788999999999999999999999888877654
No 109
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.60 E-value=0.37 Score=56.66 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHHH
Q 002257 298 SPRTASMDFVSELVR 312 (946)
Q Consensus 298 s~R~aa~~ll~~l~~ 312 (946)
+++.+|.++|..++.
T Consensus 677 ei~~~AL~vIincVc 691 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVC 691 (1516)
T ss_pred HHHHHHHhhhheeec
Confidence 356666666655543
No 110
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.37 E-value=65 Score=38.69 Aligned_cols=126 Identities=16% Similarity=0.128 Sum_probs=78.3
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
++.+.-|.+.+..+..+- +. ...+++-+.....+ +|...|.-.+.-+-.-|+.-.+ +.-.=.+
T Consensus 49 d~~KleAmKRIia~iA~G-~d-vS~~Fp~VVKNVas--------kn~EVKkLVyvYLlrYAEeqpd-------LALLSIn 111 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAKG-KD-VSLLFPAVVKNVAS--------KNIEVKKLVYVYLLRYAEEQPD-------LALLSIN 111 (968)
T ss_pred cHHHHHHHHHHHHHHhcC-Cc-HHHHHHHHHHHhhc--------cCHHHHHHHHHHHHHHhhcCCC-------ceeeeHH
Confidence 455566666666655432 32 34455555444433 2556666665555555544111 1111123
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
.+.-.|.++++.+|+-|+.+++-+. -+-..+-++-++-++..|+.+.||-.||.||..+-...
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR-----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR-----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence 4445688999999999998885542 23345556666777788999999999999999988763
No 111
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.86 E-value=14 Score=39.75 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=79.0
Q ss_pred CCchhHhHHH-HHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccc-------cCChhHHH
Q 002257 341 KPYRQKDGAL-LAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN-------FSDQNNFR 412 (946)
Q Consensus 341 ~~~~~keaal-~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~-------f~~~~~~~ 412 (946)
+.||...+.- ..+..+...-.+.+.+...+ .++...++..+.+..+-.|.++|.++..+..-. ++.-....
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~-~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~ 165 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHW-PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFS 165 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhh-hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHH
Confidence 4798888544 44444444212222222122 344444554555778999999999999996521 11112344
Q ss_pred HHHHHHHhcCC--------CCCCchHHHHHHHHHHHHHhcc--cccccccchHHHH-HHHHHHHhhhhh---hh----HH
Q 002257 413 KALHSVVSGLR--------DPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLL-DEFFKLMNEVEN---ED----LV 474 (946)
Q Consensus 413 ~~~~~l~~~L~--------d~~~~V~~~Aa~Al~~~~~~~~--~~~~l~p~l~~il-~~Ll~ll~~~~~---e~----l~ 474 (946)
-+.+++.+++. ++...+-..|--|+..++.... ....-...+..++ +.++.-+..... .. ++
T Consensus 166 v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 166 VFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred HHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 45556666664 3344555556666666655421 1222222233333 224444432222 22 33
Q ss_pred HHHHHHHHhhCCcccccHHHHHHHHH
Q 002257 475 FTLETIVDKFGEEMAPYALGLCQNLA 500 (946)
Q Consensus 475 ~~L~~iv~~~~~~i~p~~~~l~~~L~ 500 (946)
..+..++..++.....|...++..|.
T Consensus 246 ~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 246 QQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44555555555555544444444443
No 112
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=21 Score=38.76 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=70.7
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHH--HHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSVV 419 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~l~ 419 (946)
....|++|+--+--..+.+...+++. .+.. +.. ++..+++.++-||+.|.|++|..+.-.-+.++.. ...++.++
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~-~~gg-l~~-ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLI-SLGG-LVP-LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHh-hccC-HHH-HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 67889999999999998876544433 2222 222 3336778999999999999999865221111111 13567777
Q ss_pred hcCC-CCCCchHHHHHHHHHHHHHhcc
Q 002257 420 SGLR-DPELPVRVDSVFALRSFVEACR 445 (946)
Q Consensus 420 ~~L~-d~~~~V~~~Aa~Al~~~~~~~~ 445 (946)
..+. +.+..||..|..|+..++++..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 7776 5567799999999999999863
No 113
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=78 Score=37.80 Aligned_cols=159 Identities=11% Similarity=0.120 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002257 519 PGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMME 598 (946)
Q Consensus 519 ~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~ 598 (946)
+++..+-|++.+++.+..-+......-..++..++|.+.-.++.+..-+..-++++++.+ .-.=+....+.++|...++
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~n 506 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHN 506 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHH
Confidence 456667788888888888554433344556677777766666665444556688888776 2222344456688999999
Q ss_pred HHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHc-CCCCCCcccCchhhHHHHHHHHcccCchhc
Q 002257 599 ALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMA-DKNLEDGDIEPAPKLIEVVFQNCKGQVDHW 677 (946)
Q Consensus 599 ~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~-~~~~~~~~~~~a~~ll~~il~~~~~~~~~~ 677 (946)
++++.....--+..-+++.|+... ++ ++..-+.+-.+.+++|. +..++ ......+++.++..++.++.||
T Consensus 507 cl~nn~lpv~ieAalAlq~fi~~~--q~----h~k~sahVp~tmekLLsLSn~fe---iD~LS~vMe~fVe~fseELspf 577 (970)
T COG5656 507 CLKNNHLPVMIEAALALQFFIFNE--QS----HEKFSAHVPETMEKLLSLSNTFE---IDPLSMVMESFVEYFSEELSPF 577 (970)
T ss_pred HHhcCCcchhhhHHHHHHHHHhch--hh----hHHHHhhhhHHHHHHHHhccccc---chHHHHHHHHHHHHhHHhhchh
Confidence 987422111112234566666554 22 22344566667777774 22222 1235678889999998888877
Q ss_pred hHHHHHHHHH
Q 002257 678 VEPYLRITVE 687 (946)
Q Consensus 678 l~~il~~~~~ 687 (946)
-+.+.+.+.+
T Consensus 578 a~eLa~~Lv~ 587 (970)
T COG5656 578 APELAGSLVR 587 (970)
T ss_pred HHHHHHHHHH
Confidence 7776666555
No 114
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.28 E-value=17 Score=43.76 Aligned_cols=142 Identities=19% Similarity=0.225 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcc
Q 002257 300 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 379 (946)
Q Consensus 300 R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~ 379 (946)
--.|.+.+..||+.+++.+++.+..+..+.=. .+..+ .-.+.-||.+..+-...+-+.+ |.. . +.+..+
T Consensus 785 yLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~---k~~~d-~~lkVGEai~k~~qa~Gel~~~---y~~---~-Li~tfl 853 (982)
T KOG4653|consen 785 YLNAIRGVVSLCEVYPEDILPDLSEEYLSEKK---KLQTD-YRLKVGEAILKVAQALGELVFK---YKA---V-LINTFL 853 (982)
T ss_pred eHHHHHHHHHHHHhcchhhHHHHHHHHHhccc---CCCcc-ceehHHHHHHHHHHHhccHHHH---HHH---H-HHHHHH
Confidence 34566777789999999888888875544322 11111 2456667777776666555433 222 2 334444
Q ss_pred cCCCCCccchhHHHHHHHHhhhcc-ccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 380 PEFSSPVGHLRAKAAWVAGQYAHI-NFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 380 p~l~~~~~~lr~ra~~~l~~~~~~-~f~~~~~~~~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
...++|....|+.+|-.+|+.+.. .|+-.+.+.+++..+++... |....||-+|+.-+..++... ...+.|++
T Consensus 854 ~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t--g~dlLpil 928 (982)
T KOG4653|consen 854 SGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT--GEDLLPIL 928 (982)
T ss_pred HhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc--chhhHHHH
Confidence 556678889999999999999763 35545678888888888876 778889999999999998873 45555543
No 115
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.25 E-value=2.4 Score=41.66 Aligned_cols=89 Identities=28% Similarity=0.436 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHH---HHH---HHhh
Q 002257 411 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTL---ETI---VDKF 484 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L---~~i---v~~~ 484 (946)
...+++..+..|...+-|-+.-|..++..+++. ...+.+.|.+|+++..+-+.++..+.+....+| ..+ -...
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 457888889999988899999999999999998 367889999999999999999988877765544 444 3456
Q ss_pred CCcccccHHHHHHHHH
Q 002257 485 GEEMAPYALGLCQNLA 500 (946)
Q Consensus 485 ~~~i~p~~~~l~~~L~ 500 (946)
++.+.||..++.+.+.
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7888899888877654
No 116
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.85 E-value=83 Score=37.31 Aligned_cols=107 Identities=16% Similarity=0.333 Sum_probs=76.0
Q ss_pred CCccchhHHHHHHHHhhhccc-------------------cCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHh
Q 002257 384 SPVGHLRAKAAWVAGQYAHIN-------------------FSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 384 ~~~~~lr~ra~~~l~~~~~~~-------------------f~~~~~~~~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~ 443 (946)
++.|=+-.|||--+|+|-... | ..+....-...+++.|. +.|..||-.|..-|-.+|+.
T Consensus 321 D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 321 DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 566777778888888873311 1 11333444677788887 78899999999999999987
Q ss_pred cccccccccchHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhCCcccccHHHHHHHH
Q 002257 444 CRDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKFGEEMAPYALGLCQNL 499 (946)
Q Consensus 444 ~~~~~~l~p~l~~il~~Ll~ll~~~~~---e~l~~~L~~iv~~~~~~i~p~~~~l~~~L 499 (946)
. ....|++.+++.+...|. |++..-+.-+.+.|..+...|+..+.+-+
T Consensus 400 ~--------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 400 S--------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred h--------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 4 456788888888877554 44544455668899999888888777643
No 117
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.22 E-value=4 Score=51.69 Aligned_cols=78 Identities=26% Similarity=0.260 Sum_probs=45.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
++..|.+|+.+||.+... . .+ ...+...+.++++.+|..|.+.++.... .+.++.++..
T Consensus 788 d~~VR~aA~~aLg~~g~~--~------~~----~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------~~a~~~L~~~ 846 (897)
T PRK13800 788 DPLVRAAALAALAELGCP--P------DD----VAAATAALRASAWQVRQGAARALAGAAA---------DVAVPALVEA 846 (897)
T ss_pred CHHHHHHHHHHHHhcCCc--c------hh----HHHHHHHhcCCChHHHHHHHHHHHhccc---------cchHHHHHHH
Confidence 466666666666665321 0 01 0112334556667777777777765532 1234666667
Q ss_pred CCCCCCchHHHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRSF 440 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~ 440 (946)
|.|++..||..|+.||..+
T Consensus 847 L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hcCCCHHHHHHHHHHHhcc
Confidence 7777777777777777664
No 118
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=85.15 E-value=0.98 Score=56.14 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=15.8
Q ss_pred chhhHHHHHHhcchh---hHHHHHHHHHHHHHh
Q 002257 37 WPHLLDWVKHNLQDQ---QVYGALFVLRILSRK 66 (946)
Q Consensus 37 Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~ 66 (946)
|.-.+..|+.-|.|+ .-.|-..+|.++...
T Consensus 1 w~Y~l~RLirGl~S~r~~aR~Gfs~~Lte~l~~ 33 (784)
T PF04931_consen 1 WQYALKRLIRGLASSRESARLGFSLALTELLSQ 33 (784)
T ss_pred CchhHHHHhcccCCChHHHHHHHHHHHHHHHHh
Confidence 444555555555555 234555555555554
No 119
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.50 E-value=39 Score=42.96 Aligned_cols=76 Identities=26% Similarity=0.234 Sum_probs=36.2
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
++..|.+|+.+++.+.+..... .-+ ...|.+++|.+|..|+..++....- +. ..++..
T Consensus 665 d~~VR~~Aa~aL~~l~~~~~~~--------~~L----~~~L~~~d~~VR~~A~~aL~~~~~~---~~-------~~l~~~ 722 (897)
T PRK13800 665 AAAVRRAAAEGLRELVEVLPPA--------PAL----RDHLGSPDPVVRAAALDVLRALRAG---DA-------ALFAAA 722 (897)
T ss_pred CHHHHHHHHHHHHHHHhccCch--------HHH----HHHhcCCCHHHHHHHHHHHHhhccC---CH-------HHHHHH
Confidence 5566666666666554322110 001 1123345566666666666554310 10 123344
Q ss_pred CCCCCCchHHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRS 439 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~ 439 (946)
|.|++..||..|+.||..
T Consensus 723 L~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 723 LGDPDHRVRIEAVRALVS 740 (897)
T ss_pred hcCCCHHHHHHHHHHHhc
Confidence 555555666666666554
No 120
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=84.19 E-value=12 Score=42.58 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHH--hcCCCCCH-HHHHHHHHHHHHHh-
Q 002257 526 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT--FFSPTISL-EMWSLWPLMMEALA- 601 (946)
Q Consensus 526 ~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~--~~~~~i~p-~l~~l~~~l~~~~~- 601 (946)
..++-+..++..+ .|+.+..+...++..+..|++.......+.|+.+|..-- .....-+. .+.-+||.+.+...
T Consensus 274 ~FL~el~~il~~~--~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~ 351 (409)
T PF01603_consen 274 LFLNELEEILEVL--PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKN 351 (409)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS
T ss_pred HHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 3455566777665 355677888889999999999988888899988887532 11111111 12233444433221
Q ss_pred hhHhhhHhhhHHHHHHHHhcCcc
Q 002257 602 DWAIDFFPNILVPLDNYISRGTA 624 (946)
Q Consensus 602 ~~~~~~l~~~~~~L~~~i~~~~~ 624 (946)
.|....-.....++..+...+++
T Consensus 352 HWn~~Vr~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 352 HWNQTVRNLAQNVLKILMEMDPK 374 (409)
T ss_dssp -SSTTHHHHHHHHHHHHHTTSHH
T ss_pred HhhHHHHHHHHHHHHHHHHhCHH
Confidence 25544444444555555555544
No 121
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.09 E-value=45 Score=37.51 Aligned_cols=209 Identities=14% Similarity=0.150 Sum_probs=120.4
Q ss_pred hhHhhhhcC---hHHHHHhhccccc--cccCHHHHHHH-HHHHHHHh-cC--cccHHHHHHHHHHhhcccCCCCcCCCCc
Q 002257 273 NDQKLWDED---PHEYVRKGYDIIE--DLYSPRTASMD-FVSELVRK-RG--KENLQKFIQFIVGIFKRYDETPVEYKPY 343 (946)
Q Consensus 273 ~d~e~we~D---p~efi~~~~d~~~--d~~s~R~aa~~-ll~~l~~~-~~--~~~l~~ll~~i~~~l~~~~~~~~~~~~~ 343 (946)
++.+.|.++ ...||+......+ +--+-|..|.. +..-++.. ++ .+.+..++-.+.+.+... .+.
T Consensus 272 ~~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-------~~~ 344 (516)
T KOG2956|consen 272 DSMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-------EDE 344 (516)
T ss_pred cchhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-------hhh
Confidence 344455543 2356665543211 22344555544 55555543 21 344556666666777652 255
Q ss_pred hhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCC-CccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 002257 344 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 422 (946)
Q Consensus 344 ~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L 422 (946)
..|.-||+.++-+...-.. .+.+.-|--+. -++..-.+ ....+|..+-.|+.-.+.+. +..... .+..++
T Consensus 345 ~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~-K~Leaa~ds~~~v~~~Aeed~~~~las~~--P~~~I~----~i~~~I 415 (516)
T KOG2956|consen 345 IIKKLALRVLREMLTNQPA--RLFDSTEIAIC-KVLEAAKDSQDEVMRVAEEDCLTTLASHL--PLQCIV----NISPLI 415 (516)
T ss_pred HHHHHHHHHHHHHHHhchH--hhhchHHHHHH-HHHHHHhCCchhHHHHHHHHHHHHHHhhC--chhHHH----HHhhHH
Confidence 7788888887766544111 11112222222 23333334 34466665555444444432 322233 333333
Q ss_pred CCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhC-CcccccHHHHHHH
Q 002257 423 RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG-EEMAPYALGLCQN 498 (946)
Q Consensus 423 ~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~-~~i~p~~~~l~~~ 498 (946)
...|.+.-+.+...+.++++.- ..+.+-+.+++++..+++..+..+... .+.||=.++.+.+ +++.||...|...
T Consensus 416 lt~D~~~~~~~iKm~Tkl~e~l-~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 416 LTADEPRAVAVIKMLTKLFERL-SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred hcCcchHHHHHHHHHHHHHhhc-CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 3366676677777888888876 578888999999999998887665543 5678888888888 8999999888654
No 122
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.97 E-value=7.4 Score=41.82 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=51.0
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~----~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
++..+.+..+=+|.++|-.+|.++- .-+.- +.-+.+++.+++.+.+++..|+..|..||+++..+.
T Consensus 213 LVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 3445667889999999999998862 10011 233458899999999999999999999999998764
No 123
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=83.97 E-value=9.4 Score=41.82 Aligned_cols=160 Identities=11% Similarity=0.067 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhccc---chhhH-HHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHH
Q 002257 526 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT---DGQEV-FEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEAL 600 (946)
Q Consensus 526 ~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~---~~~~~-~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~ 600 (946)
.++..+.+.+....+...+.. ..+-|++..+|.. ..++. .++++.+++.++... ..+.|.+..++..++.+.
T Consensus 46 eIL~Li~t~i~~~~~~~~v~~---~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 46 EILKLIETFISKAEDPEEVAN---NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHT-S-HHHHHH---HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 456666666665543222222 2233334445432 22233 478999999998765 345666666666665554
Q ss_pred h----hh---HhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHccc-
Q 002257 601 A----DW---AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG- 672 (946)
Q Consensus 601 ~----~~---~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~- 672 (946)
. ++ -.++-......|++.+....+.+++ =.++....+++.+.-.+.++ ..+....|+.++..++.++..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~-lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQ-LPPEQFKLVIDSIVWGFKHT--NREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHH-S-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHc-CCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHhc
Confidence 3 21 1344455667777777766666652 11234455555555555443 222244678888888887754
Q ss_pred --C-----chhchHHHHHHHHHHHHh
Q 002257 673 --Q-----VDHWVEPYLRITVERLRR 691 (946)
Q Consensus 673 --~-----~~~~l~~il~~~~~~L~~ 691 (946)
. ...|.-.+++.++.-+.+
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD 225 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTD 225 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 1 123444445555555544
No 124
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.84 E-value=1e+02 Score=36.68 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=60.4
Q ss_pred HHHHHHHhcccCCCCCccchhHHHHHHHHhhhcc-ccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 370 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI-NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 370 l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~-~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
+.+.+..|++....++..-+|.|+|.++....+. .-.+...+..+...+...+.|..+.||.+|..||.++-.+.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 3344557888888889999999999999999762 12345677788888888899999999999999999998654
No 125
>PF05536 Neurochondrin: Neurochondrin
Probab=83.20 E-value=1.1e+02 Score=36.40 Aligned_cols=153 Identities=12% Similarity=0.141 Sum_probs=88.9
Q ss_pred HHHHHHHhcccchh-hHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccc
Q 002257 552 LLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLT 628 (946)
Q Consensus 552 l~p~i~~~l~~~~~-~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~ 628 (946)
-+|++..++..... ...+++++++..+. .++.-...+. ...+.+.....+ ..-..+..+.++.+.+.........
T Consensus 99 ~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~ 176 (543)
T PF05536_consen 99 RIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWA 176 (543)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhh
Confidence 46888888877666 89999999999998 3332222232 244555554432 2233455566666655554433332
Q ss_pred cCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHccc------CchhchHHHHHHHHHHHHhhhhhHHHHHHH
Q 002257 629 CKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG------QVDHWVEPYLRITVERLRRAEKSYLKCLLV 702 (946)
Q Consensus 629 ~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~------~~~~~l~~il~~~~~~L~~~~~~~~~~~~l 702 (946)
..+..+..++.-+.+.+... ....+...+.++..++...+- .-..++..+...+-.-|+++-++.-|...+
T Consensus 177 -~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al 253 (543)
T PF05536_consen 177 -EDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPAL 253 (543)
T ss_pred -hhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 23345566666666666432 344466678888888888741 123466666666666666644455555555
Q ss_pred HHHHHHH
Q 002257 703 QVIADAL 709 (946)
Q Consensus 703 ~v~~~~~ 709 (946)
.+.+.++
T Consensus 254 ~Laa~Ll 260 (543)
T PF05536_consen 254 NLAASLL 260 (543)
T ss_pred HHHHHHH
Confidence 4444443
No 126
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.08 E-value=0.74 Score=54.31 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 002257 206 YAGKILECHLN 216 (946)
Q Consensus 206 ~~~~~l~~~~~ 216 (946)
+.|.|.+.+|.
T Consensus 582 ~gp~f~~~~w~ 592 (1516)
T KOG1832|consen 582 LGPTFVKAQWP 592 (1516)
T ss_pred hChhhhhhcch
Confidence 34444444443
No 127
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=82.77 E-value=88 Score=35.14 Aligned_cols=243 Identities=10% Similarity=0.171 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCC--CccchhHHHHHH
Q 002257 319 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS--PVGHLRAKAAWV 396 (946)
Q Consensus 319 l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~--~~~~lr~ra~~~ 396 (946)
++.+++++..-+.+.. +.++..+-+.--.|+.++|.+...-.=.+.+..+...|+..+.+..+.+ .+.-+..++.|+
T Consensus 37 ~~~l~~~i~rDi~~~~-~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ 115 (372)
T PF12231_consen 37 MSLLLQFIQRDISSSS-SKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWC 115 (372)
T ss_pred HHHHHHHHHHHHhccc-CCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445555555554321 1122225678888999999887652211112234555666666666653 456788899999
Q ss_pred HHhhhccccCCh---hHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHHhccccccccc----chHHHHHHHHHHHhh
Q 002257 397 AGQYAHINFSDQ---NNFRKALHSVVSGLRD--PELPVRVDSVFALRSFVEACRDLNEIRP----ILPQLLDEFFKLMNE 467 (946)
Q Consensus 397 l~~~~~~~f~~~---~~~~~~~~~l~~~L~d--~~~~V~~~Aa~Al~~~~~~~~~~~~l~p----~l~~il~~Ll~ll~~ 467 (946)
++.= .|.+. ......+-.++..+.+ ++..|-.++..++++++... ++.+.. .++.++..++...+.
T Consensus 116 ls~Q---~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~--p~~M~~~~~~W~~~l~~~l~~~~k~ 190 (372)
T PF12231_consen 116 LSDQ---KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQF--PQQMIKHADIWFPILFPDLLSSAKD 190 (372)
T ss_pred HHcC---CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 9762 23221 2333334444444443 46678889999999999984 344433 455666666665543
Q ss_pred hhhhhH------HHHH-------HHHHHhhCCccc--ccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHH
Q 002257 468 VENEDL------VFTL-------ETIVDKFGEEMA--PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIS 532 (946)
Q Consensus 468 ~~~e~l------~~~L-------~~iv~~~~~~i~--p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~ 532 (946)
.-...+ ..++ ..+.+.+...+. .|...++++| ..+.. ++ +....++.+...+.
T Consensus 191 ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L----~~mi~----~~----~~~~~a~~iW~~~i 258 (372)
T PF12231_consen 191 IRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERL----KEMIK----SK----DEYKLAMQIWSVVI 258 (372)
T ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHH----HHHHh----Cc----CCcchHHHHHHHHH
Confidence 221110 0111 111111221111 2233333333 23333 11 12234566777777
Q ss_pred HHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC
Q 002257 533 TILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 582 (946)
Q Consensus 533 ~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~ 582 (946)
.+++.-. ----.+....+.+.+.|+.+.....--.++.-|..+++..
T Consensus 259 ~LL~~~~---~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~ 305 (372)
T PF12231_consen 259 LLLGSSR---LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYAS 305 (372)
T ss_pred HHhCCch---hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 7775321 0012234567888889998877777778899999998854
No 128
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.08 E-value=4 Score=35.45 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=54.9
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
++..++++.+-+|+.+...+++...-.-.+......++..++..|.|++.-|...|+.++..+++..
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 3445788888899999999999855221133567899999999999999999999999999999874
No 129
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=81.87 E-value=84 Score=34.26 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHH---HHHHHHHHhhCC
Q 002257 410 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGE 486 (946)
Q Consensus 410 ~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~~~~ 486 (946)
.+..-+...+..+.+.....|..|..++...+......+.+......++..+.+.+++-..+... .++.-++-.++.
T Consensus 40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 34444666677777777779999999999999877667778888899999999999774433322 444444445431
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHH-Hhcccc--
Q 002257 487 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMR-RMLTTD-- 563 (946)
Q Consensus 487 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~-~~l~~~-- 563 (946)
. .-..++...+.+.+.+++..+. .....+..|+.+++-+.-..+..++.+....+.+=-++. .+.+.+
T Consensus 120 g--~~~~ei~~~~~~~L~~~l~d~s-------~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~ 190 (309)
T PF05004_consen 120 G--EDSEEIFEELKPVLKRILTDSS-------ASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGN 190 (309)
T ss_pred C--ccHHHHHHHHHHHHHHHHhCCc-------cchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCC
Confidence 1 2345666666666667765221 222334566666654433333344333311111111111 112221
Q ss_pred --------hhhHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHh
Q 002257 564 --------GQEVFEEVLEIVSYMTFFSPT--ISLEMWSLWPLMMEALA 601 (946)
Q Consensus 564 --------~~~~~~~~l~ll~~l~~~~~~--i~p~l~~l~~~l~~~~~ 601 (946)
...+.-.+++-|+.++-..+. +...+...+|.+...+.
T Consensus 191 ~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~ 238 (309)
T PF05004_consen 191 APVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD 238 (309)
T ss_pred cccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 235788889999888743322 33222345555555554
No 130
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.22 E-value=44 Score=36.53 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=66.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHhhcCCCCch---hhHHHHHHhcchh-------hHHHHHHHHHHHHHhcccCCCcCc
Q 002257 6 ILVFVAQVPPLLRVQLGECLKTIIHADYPEQWP---HLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEFKSDEER 75 (946)
Q Consensus 6 Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp---~Ll~~l~~~l~s~-------~~~~~L~~L~~i~k~~~~~~~~~~ 75 (946)
++..+.+++..|+.+.+.+++.++.+.=+..=. +.++.+++.+++. .+..|+++|..+.+.=+ .|
T Consensus 110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-----~R 184 (312)
T PF03224_consen 110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-----YR 184 (312)
T ss_dssp HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-----HH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-----hH
Confidence 455556789999999999999999887554444 7788888887753 35899999999986411 11
Q ss_pred chHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhh
Q 002257 76 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL 123 (946)
Q Consensus 76 ~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~ 123 (946)
..+.. ....+.+..++...... .+....++++.++-|+|-+++.
T Consensus 185 ~~f~~--~~~v~~l~~iL~~~~~~--~~~~~~Ql~Y~~ll~lWlLSF~ 228 (312)
T PF03224_consen 185 QVFWK--SNGVSPLFDILRKQATN--SNSSGIQLQYQALLCLWLLSFE 228 (312)
T ss_dssp HHHHT--HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTS
T ss_pred HHHHh--cCcHHHHHHHHHhhccc--CCCCchhHHHHHHHHHHHHhcC
Confidence 22222 44455555555321111 1233678899999999977644
No 131
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=80.02 E-value=16 Score=35.44 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC-----CCccchhHHHH
Q 002257 320 QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-----SPVGHLRAKAA 394 (946)
Q Consensus 320 ~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~-----~~~~~lr~ra~ 394 (946)
+.+++.+.+.+.+. .+|..|..++..+|.++.- + |++ .+.+..... +...-......
T Consensus 9 P~LL~~L~~iLk~e-------~s~~iR~E~lr~lGilGAL--D--P~~-------~k~~~~~~~~~~~~~~~~~~~~~~l 70 (160)
T PF11865_consen 9 PELLDILLNILKTE-------QSQSIRREALRVLGILGAL--D--PYK-------HKSIQKSLDSKSSENSNDESTDISL 70 (160)
T ss_pred HHHHHHHHHHHHhC-------CCHHHHHHHHHHhhhcccc--C--cHH-------HhcccccCCccccccccccchhhHH
Confidence 45666666666552 2699999999999998753 1 121 111111111 11111111111
Q ss_pred HHHHhhhccccCChhH-HHHHHHHHHhcCCCCCCch-HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh
Q 002257 395 WVAGQYAHINFSDQNN-FRKALHSVVSGLRDPELPV-RVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 470 (946)
Q Consensus 395 ~~l~~~~~~~f~~~~~-~~~~~~~l~~~L~d~~~~V-~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~ 470 (946)
.....+. ..++. ..-++..+++.|+|+.+.- +..++.|+-.++... .....||++.++..++..+...+.
T Consensus 71 -~~~~~~~---~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l--~~~cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 71 -PMMGISP---SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL--GLKCVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred -hhccCCC---chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc--CcCchhHHHHHhHHHHHHHHhCCH
Confidence 1111110 12233 3446778888889987774 467888888888663 344589999999999999986554
No 132
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=79.65 E-value=63 Score=31.44 Aligned_cols=83 Identities=8% Similarity=0.112 Sum_probs=51.0
Q ss_pred hhhhHHHHHhc--CChhHHHHHHHHHHHHHhhc--CC-CCchhhHHHHHHhcchhhHHHHHHHHHHHHHhcccCCCcCcc
Q 002257 2 VRDHILVFVAQ--VPPLLRVQLGECLKTIIHAD--YP-EQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERT 76 (946)
Q Consensus 2 Ir~~Ll~~l~~--~~~~ir~ql~~~is~Ia~~D--~P-~~Wp~Ll~~l~~~l~s~~~~~~L~~L~~i~k~~~~~~~~~~~ 76 (946)
||..|+.+|.+ .....-+-++.+++.+|..= +| +.|++|.+.+.+.-.+ ....|..++..+.-.+ + ..
T Consensus 4 ikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~-e~~kA~~IF~~L~~~l-~-----~e 76 (174)
T PF04510_consen 4 IKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN-EPVKAFHIFICLPMPL-Y-----GE 76 (174)
T ss_pred hHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc-chHHHHHHHHhCCchh-h-----hh
Confidence 68889999963 33456677777777777543 46 8999999988875432 3355666665554211 0 12
Q ss_pred hHHHHHHHHhHHHHH
Q 002257 77 PVYRIVEETFHHLLN 91 (946)
Q Consensus 77 ~l~~i~~~~~p~L~~ 91 (946)
.+...+..++|...+
T Consensus 77 fl~~~~~~L~~~~~~ 91 (174)
T PF04510_consen 77 FLIPFMENLLPEISK 91 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554433
No 133
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=79.50 E-value=1.1e+02 Score=34.15 Aligned_cols=121 Identities=11% Similarity=0.073 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhccc
Q 002257 301 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP 380 (946)
Q Consensus 301 ~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p 380 (946)
.++.-++.-+.....+++...++.++-.+|+++ +.+. .+++-.+....+. ++ ..|+ +
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d----------~sr~---~lf~~~a~~~k~~-~~----~~fl-----~ 121 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED----------RSRV---DLFHDYAHKLKRT-EW----LSFL-----N 121 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC----------chHH---HHHHHHHHhhhcc-ch----HHHH-----H
Confidence 334444444444556788888899999998764 2222 2333334333222 12 1222 3
Q ss_pred CCCCCccchhHHHHHHHHhhhc---cccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcc
Q 002257 381 EFSSPVGHLRAKAAWVAGQYAH---INFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACR 445 (946)
Q Consensus 381 ~l~~~~~~lr~ra~~~l~~~~~---~~f~~~~~~~~~~~~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~~ 445 (946)
.+...++++...+.|++++.+. +.... ..+.-....+-..|++ .+.--...|+++|+.++..++
T Consensus 122 ll~r~d~~iv~~~~~Ils~la~~g~~~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e 189 (442)
T KOG2759|consen 122 LLNRQDTFIVEMSFRILSKLACFGNCKMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE 189 (442)
T ss_pred HHhcCChHHHHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc
Confidence 4567888888878888888754 22111 1233344444455554 344456779999999999875
No 134
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=78.93 E-value=12 Score=41.38 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHH----hcccccChhhHhhhhc
Q 002257 205 NYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIV----FPLMCFNDNDQKLWDE 280 (946)
Q Consensus 205 ~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii----~p~l~lt~~d~e~we~ 280 (946)
+.+|.|++.+-+.+...-.+ .-..+...++.+.+.+.++.. .+.+++-.++..++ -+.++-+..
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~---nl~~L~~lm~~v~ALl~N~~l--~le~Ylh~Lip~vltclv~~~l~~~~~------- 277 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQ---NLALLIYLMRMVRALLDNPNL--HLEPYLHQLIPSVLTCLVAKQLCSRPP------- 277 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcc---cHHHHHHHHHHHHHHhcCCCC--chHHhHHHHHHHHHHHhhhHhhcCCCC-------
Confidence 34555555544444321111 346688888888888887754 34555555554333 233332211
Q ss_pred ChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHh
Q 002257 281 DPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 358 (946)
Q Consensus 281 Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~ 358 (946)
.++.|..|.-|+.++..++.+++... +.+.+.+...+.+...+|.. ..-.++||+..++.++.
T Consensus 278 ------------~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~--~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 278 ------------DDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKK--PLTTHYGAIVGLSALGP 340 (343)
T ss_pred ------------CchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCC--CcchhhHHHHHHHHhCc
Confidence 12458899999999999999996532 22333333333322223321 34459999999988764
No 135
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.38 E-value=1.6e+02 Score=35.29 Aligned_cols=277 Identities=12% Similarity=0.124 Sum_probs=149.8
Q ss_pred HHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 002257 374 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 453 (946)
Q Consensus 374 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~ 453 (946)
..+.+--++++++-+=-+-|+-.+|+|.. +.....+.+-++..|+++-+-||-.|...+-.++... ++.++|.
T Consensus 110 ~tn~~rkdl~S~n~ye~giAL~GLS~fvT-----pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY--PeAlr~~ 182 (877)
T KOG1059|consen 110 TTNLLRKDLNSSNVYEVGLALSGLSCIVT-----PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY--PEALRPC 182 (877)
T ss_pred HHHHHHHHhccCccchhhheecccccccC-----chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh--hHhHhhh
Confidence 44455556777777777788888877754 5688899999999999888889999999998887764 6889998
Q ss_pred hHHHHHHHHHHHhhhhhhhHH---HHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHH
Q 002257 454 LPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRA 530 (946)
Q Consensus 454 l~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~t 530 (946)
+|.+.++| ..-+..... .++..+...-.....|+|+.+..-|+ .+. ++.+.. .
T Consensus 183 FprL~EkL----eDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllt--------tSs-------NNWmLI-K---- 238 (877)
T KOG1059|consen 183 FPRLVEKL----EDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLV--------TSS-------NNWVLI-K---- 238 (877)
T ss_pred HHHHHHhc----cCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHh--------ccC-------CCeehH-H----
Confidence 87776665 223332333 44444444445566666766665443 111 223221 1
Q ss_pred HHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHH----H--HHHHHHHHHHhhhH
Q 002257 531 ISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM----W--SLWPLMMEALADWA 604 (946)
Q Consensus 531 i~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l----~--~l~~~l~~~~~~~~ 604 (946)
|..+..++.. +-+.+-..++|.+...+.+-.. ..=.++.+.+++.. +++..+ . ++.-.=+..+..+.
T Consensus 239 iiKLF~aLtp---lEPRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~--s~s~g~~d~~asiqLCvqKLr~fieds 311 (877)
T KOG1059|consen 239 LLKLFAALTP---LEPRLGKKLIEPITELMESTVA--MSLLYECVNTVVAV--SMSSGMSDHSASIQLCVQKLRIFIEDS 311 (877)
T ss_pred HHHHHhhccc---cCchhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheee--hhccCCCCcHHHHHHHHHHHhhhhhcC
Confidence 2233344322 1133444566666655543211 11123333343322 222221 1 11111111111111
Q ss_pred ---hhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHH
Q 002257 605 ---IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPY 681 (946)
Q Consensus 605 ---~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~i 681 (946)
--|+.-+ ++.-... .+|..++.--+++-++|.+. +++-+..|..|+..|+-.= -+..|
T Consensus 312 DqNLKYlgLl--am~KI~k---------tHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVskk------Nl~eI 372 (877)
T KOG1059|consen 312 DQNLKYLGLL--AMSKILK---------THPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVSKK------NLMEI 372 (877)
T ss_pred CccHHHHHHH--HHHHHhh---------hCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhhhh------hHHHH
Confidence 1232211 1111111 23445666667888888655 6666778999998887642 35566
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002257 682 LRITVERLRRAEKSYLKCLLVQVIAD 707 (946)
Q Consensus 682 l~~~~~~L~~~~~~~~~~~~l~v~~~ 707 (946)
++.++..+..+....++.-++..++.
T Consensus 373 Vk~LM~~~~~ae~t~yrdell~~II~ 398 (877)
T KOG1059|consen 373 VKTLMKHVEKAEGTNYRDELLTRIIS 398 (877)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHH
Confidence 66666666554444555555544433
No 136
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=77.78 E-value=16 Score=38.38 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=82.7
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCC--CccchhHHHHHHHHhhhccccCChhHHHHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS--PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVV 419 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~--~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~ 419 (946)
+...|+-|+.++..++...... ..++.+ ..+|..+..+ -+..++-.+...+...+- .......+...++.++
T Consensus 67 ~~~vr~~AL~aL~Nls~~~en~----~~Ik~~-i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~~i~~ll 140 (254)
T PF04826_consen 67 NPSVREKALNALNNLSVNDENQ----EQIKMY-IPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLANYIPDLL 140 (254)
T ss_pred ChHHHHHHHHHHHhcCCChhhH----HHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHhhHHHHH
Confidence 5678888999988777653221 123332 2344443322 355788888999988863 3223356778889999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhhhh-hhHHHHH
Q 002257 420 SGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVEN-EDLVFTL 477 (946)
Q Consensus 420 ~~L~d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~~~-e~l~~~L 477 (946)
+.|...+..+|.++...|-++..++. .++.+.. +.+..++.+++..+. +.+.++|
T Consensus 141 ~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~---q~~~~~~~Lf~~~~~~~~l~~~l 197 (254)
T PF04826_consen 141 SLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA---QVLSSFLSLFNSSESKENLLRVL 197 (254)
T ss_pred HHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc---cchhHHHHHHccCCccHHHHHHH
Confidence 99988888999999999999988764 3344444 356677777776543 3344443
No 137
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=77.51 E-value=24 Score=34.80 Aligned_cols=92 Identities=21% Similarity=0.290 Sum_probs=54.9
Q ss_pred cccchHHHHHHHHHHHhhhhhhhHH---HHHHHHHHh-hCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHH
Q 002257 450 IRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDK-FGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 525 (946)
Q Consensus 450 l~p~l~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~-~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 525 (946)
+.+|++-.+++| .+.+...-+ ..+..+++. .++.+.|..++++..|-..+.. .|+ -..+
T Consensus 36 y~~~Lpif~dGL----~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t------r~~-------~V~~ 98 (183)
T PF10274_consen 36 YHHYLPIFFDGL----RETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT------RDP-------EVFC 98 (183)
T ss_pred hhhHHHHHHhhh----hccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC------CCH-------HHHH
Confidence 446666666555 444444433 334455566 7788999998888777643321 122 2445
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHH
Q 002257 526 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRR 558 (946)
Q Consensus 526 ~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~ 558 (946)
.++.++..++.+-....+.+..+...++|++..
T Consensus 99 ~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~ 131 (183)
T PF10274_consen 99 ATLKALQQLVTSSDMVGEALVPYYRQLLPVLNL 131 (183)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 678888888776543334445555666777664
No 138
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.32 E-value=16 Score=38.73 Aligned_cols=136 Identities=13% Similarity=0.164 Sum_probs=83.7
Q ss_pred ccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHH
Q 002257 296 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 375 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~ 375 (946)
.|-...-+.+++..|+..-++.+.+.+...|..+.++- .|+ .--.--+|+..++.+...+.+. +...++. +.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvksl-KNl----RS~VsraA~~t~~difs~ln~~--i~~~ld~-lv 172 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSL-KNL----RSAVSRAACMTLADIFSSLNNS--IDQELDD-LV 172 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-cCh----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HH
Confidence 35567778888888887665555555555566665542 233 2234456666666666654431 1112222 22
Q ss_pred HhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 376 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 376 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
..++---...+.|+|..|-..+-...... .-..+++.++.+++.....|+..|+.+..++...-
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~v-----tp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNHV-----TPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhcc-----ChHHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 23322222478999999999997765422 34467778888888888889999988877766543
No 139
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=77.22 E-value=44 Score=38.06 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcc
Q 002257 300 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 379 (946)
Q Consensus 300 R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~ 379 (946)
|.....++..+-.++.. .-..+...+.+.+.+|...+ ....--.-+|-.+|++..|..- +.......|+.+.++
T Consensus 150 R~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e~---~~~~gI~elLeil~sii~gf~~--plk~eh~~fl~~vll 223 (409)
T PF01603_consen 150 RDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYET---ERHNGIAELLEILGSIINGFAV--PLKEEHKQFLRKVLL 223 (409)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHTT---S--STHHHHHHHHHHHHTT--S--S--HHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHH
Confidence 44555666665554422 22333444444444432211 1233355677778888777542 444566788999999
Q ss_pred cCCCCCc-cchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHH
Q 002257 380 PEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 458 (946)
Q Consensus 380 p~l~~~~-~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il 458 (946)
|..+.++ +.-...-..|+.+|.+ + ++.....++..++++=--.+..-.+.-..=+..+++.. .++.+.+...+++
T Consensus 224 PLh~~~~~~~y~~~L~~~~~~f~~-k--dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~-~~~~f~~i~~~lf 299 (409)
T PF01603_consen 224 PLHKSPHLSSYHQQLSYCVVQFLE-K--DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL-PPEEFQKIMVPLF 299 (409)
T ss_dssp GGGGSTGGGGTHHHHHHHHHHHHH-H---GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH-h--CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 9987643 4445666677777765 2 56788889999999876555555555666666777654 4567777777788
Q ss_pred HHHHHHHhhh
Q 002257 459 DEFFKLMNEV 468 (946)
Q Consensus 459 ~~Ll~ll~~~ 468 (946)
..+...++..
T Consensus 300 ~~la~ci~S~ 309 (409)
T PF01603_consen 300 KRLAKCISSP 309 (409)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHhCCC
Confidence 8877777653
No 140
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=76.68 E-value=7.4 Score=41.38 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhhhcCCcchH---HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhcc--ccCChhHHHHHHHHHHhcC
Q 002257 348 GALLAIGALCDKLKQTEPYKS---ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI--NFSDQNNFRKALHSVVSGL 422 (946)
Q Consensus 348 aal~alg~ia~~l~~~~~~~~---~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~--~f~~~~~~~~~~~~l~~~L 422 (946)
-|-.++..++.+-++.-..+. -+ +.|. ..|.++..=+|-.+.|.+|..+.- .+++--.---+++-++..+
T Consensus 134 EAaWalTNiaSGtt~QTkvVvd~~AV-Plfi----qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll 208 (526)
T COG5064 134 EAAWALTNIASGTTQQTKVVVDAGAV-PLFI----QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLL 208 (526)
T ss_pred HHHHHHhhhccCcccceEEEEeCCch-HHHH----HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHH
Confidence 344567788877543111110 12 2222 245677888999999999999751 1111111112455666666
Q ss_pred CCC--CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHH
Q 002257 423 RDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLET 479 (946)
Q Consensus 423 ~d~--~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~ 479 (946)
.++ ++..--.|...|.++|+.+++++.. ..+...+..|++++...+.|.++.+.=+
T Consensus 209 ~ss~~~ismlRn~TWtLSNlcRGknP~P~w-~~isqalpiL~KLiys~D~evlvDA~WA 266 (526)
T COG5064 209 LSSAIHISMLRNATWTLSNLCRGKNPPPDW-SNISQALPILAKLIYSRDPEVLVDACWA 266 (526)
T ss_pred HhccchHHHHHHhHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 543 2344446899999999998655444 3467788888999988888887765433
No 141
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.56 E-value=86 Score=34.24 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=46.1
Q ss_pred CCCCCccchhHHHHHHHHhhhcccc-CCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 002257 381 EFSSPVGHLRAKAAWVAGQYAHINF-SDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 455 (946)
Q Consensus 381 ~l~~~~~~lr~ra~~~l~~~~~~~f-~~~----~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~ 455 (946)
.+..+..+++..|+.+++.+....- +.. +.+..++..+.+.+++++..++..|+.++..++..+..+..+-. .
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~ 190 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--S 190 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--H
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--c
Confidence 3556789999999999999854210 111 23334444444444444566778899999999987653333322 4
Q ss_pred HHHHHHHHHH
Q 002257 456 QLLDEFFKLM 465 (946)
Q Consensus 456 ~il~~Ll~ll 465 (946)
..++.+..++
T Consensus 191 ~~v~~l~~iL 200 (312)
T PF03224_consen 191 NGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 4555555555
No 142
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.32 E-value=2.1e+02 Score=35.59 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=59.8
Q ss_pred HHHHHhhhcc---ccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc---cccccccchHHHHHHHHHHHhh
Q 002257 394 AWVAGQYAHI---NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---DLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 394 ~~~l~~~~~~---~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~---~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
..-+|.++.. .|+ ..+..++.-++..+.++...|+.-|..|+.++++..+ .+..++....=++.++-..++.
T Consensus 569 ld~I~~~a~~~g~~F~--~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~ 646 (1014)
T KOG4524|consen 569 LDSIGTIAAVMGEEFQ--PELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT 646 (1014)
T ss_pred hhhhHHHHHHhHHHHH--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc
Confidence 3445666543 343 2444445555566667778888888888888888764 4445666666666666666653
Q ss_pred h-hhhhHHHHHHHHHHhhCCcccccHHHHHH
Q 002257 468 V-ENEDLVFTLETIVDKFGEEMAPYALGLCQ 497 (946)
Q Consensus 468 ~-~~e~l~~~L~~iv~~~~~~i~p~~~~l~~ 497 (946)
. ....+..+++-+...-.-+..|+..++++
T Consensus 647 ~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq 677 (1014)
T KOG4524|consen 647 SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQ 677 (1014)
T ss_pred CCCCchhHHHHHHHhhcCCCCchhhHHHHHH
Confidence 2 23344555555544444455555555444
No 143
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.00 E-value=2.6e+02 Score=36.56 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=44.7
Q ss_pred ccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHH
Q 002257 655 DIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSL 715 (946)
Q Consensus 655 ~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~ 715 (946)
.+..|..+++.|+......+..-.++++...+.|+.+ ....+|.-++...-.|+..+|..
T Consensus 275 ~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D-~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 275 VRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFND-ISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhcc-CChhhhhhHHHHhHHHHhcCchh
Confidence 3567888888888776655556677888888888865 44567777888888888877764
No 144
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.58 E-value=32 Score=43.01 Aligned_cols=136 Identities=22% Similarity=0.329 Sum_probs=93.0
Q ss_pred HHHHHHHHHh---cC-cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHH---hhhhcCCcchHHHHHHHHH
Q 002257 304 MDFVSELVRK---RG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC---DKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 304 ~~ll~~l~~~---~~-~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia---~~l~~~~~~~~~l~~~l~~ 376 (946)
.+++..+|++ +| +.++..+.+++...... |+-..+.-.+-||..++|-+. ..+.+ .+++-+| +
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n----~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llf-t 967 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRN----PGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLF-T 967 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC----CCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHH-H
Confidence 5667777775 46 78888888888887754 333336778889998887653 22222 1343333 2
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 456 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~ 456 (946)
.+ =++|.|++|+-+..-+|-++ +.| |......-+.+...|.|++.-||.+|...|..++-.. --.++.+++.
T Consensus 968 im---eksp~p~IRsN~VvalgDla-v~f--pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~e 1039 (1251)
T KOG0414|consen 968 IM---EKSPSPRIRSNLVVALGDLA-VRF--PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSE 1039 (1251)
T ss_pred HH---hcCCCceeeecchheccchh-hhc--ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHH
Confidence 21 13789999999988888776 234 3466667777888999999999999999999998763 3344455544
Q ss_pred H
Q 002257 457 L 457 (946)
Q Consensus 457 i 457 (946)
+
T Consensus 1040 M 1040 (1251)
T KOG0414|consen 1040 M 1040 (1251)
T ss_pred H
Confidence 3
No 145
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=74.44 E-value=3.8 Score=29.30 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 002257 414 ALHSVVSGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 414 ~~~~l~~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
+++.++++|.+++..|+..|+.||.++.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6788889999888999999999999875
No 146
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=74.01 E-value=6.6 Score=26.11 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.5
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHHHhh
Q 002257 4 DHILVFVAQVPPLLRVQLGECLKTIIHA 31 (946)
Q Consensus 4 ~~Ll~~l~~~~~~ir~ql~~~is~Ia~~ 31 (946)
..+++++.+++..||...+.+++.|+++
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3567788889999999999999998864
No 147
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=73.44 E-value=54 Score=40.07 Aligned_cols=140 Identities=15% Similarity=0.099 Sum_probs=80.0
Q ss_pred HHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCccc
Q 002257 548 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAH 625 (946)
Q Consensus 548 l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~--~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~ 625 (946)
+...++|.+..-+......--.--+..++.++.+. +.+-|.+..++|.+++.+.--+.+.--.-..++.-.+...+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t- 942 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET- 942 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc-
Confidence 44456677666554221111112245566666655 367788899999999887522222211223455555554433
Q ss_pred ccccCCCchHHHHHHHHHHHHcCCCC-CCcccCchhhHHHHHHHHccc-CchhchHHHHHHHHHHHHhh
Q 002257 626 FLTCKEPDYQQSLWSMVSSIMADKNL-EDGDIEPAPKLIEVVFQNCKG-QVDHWVEPYLRITVERLRRA 692 (946)
Q Consensus 626 ~l~~~~~~~~~~i~~i~~~ll~~~~~-~~~~~~~a~~ll~~il~~~~~-~~~~~l~~il~~~~~~L~~~ 692 (946)
+.. .++..++.-+-.+=.+.+. ....+..|.++++.+.+..|. ..-+|-+.+++++...|.++
T Consensus 943 L~t----~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 943 LQT----EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred cch----HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 331 3455444332222112211 233456789999999998886 57899999999998877653
No 148
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=72.64 E-value=33 Score=39.41 Aligned_cols=107 Identities=11% Similarity=0.219 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhhccCchhhhhchhh----HHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHH
Q 002257 229 DRVTNLILQYLSNSISKNSMYNLLQPR----LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASM 304 (946)
Q Consensus 229 d~~~~~~l~fl~~~~~~~~~~~~l~~~----l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~ 304 (946)
-+++.+++....+.+.++.. .+.+. ++.++..++-++|+.+++. +.-|..|.-|+
T Consensus 261 L~lL~~lm~m~rSLl~Np~i--~lepYlh~L~PSvlTCvVsk~l~~~p~~-------------------dnhwaLRDfAA 319 (576)
T KOG2549|consen 261 LELLIYLMRMVRSLLDNPNI--FLEPYLHQLVPSVLTCVVSKNLCLRPEL-------------------DNHWALRDFAA 319 (576)
T ss_pred HHHHHHHHHHHHHHhcCCcc--chhhHHHHHhhHHHHhhhhhhccCCccc-------------------cchHHHHHHHH
Confidence 36777777777777777653 23444 5556666666788876632 23478899999
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhh
Q 002257 305 DFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 359 (946)
Q Consensus 305 ~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~ 359 (946)
.++..+|++++..+ ..+-+.+...+.+...++. +.|-..+|++..+..+...
T Consensus 320 ~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~--~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 320 RLLAQICKNFSTLY-NNLQPRITRTLSKALLDNK--KPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred HHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCC--CCchhhhhHHHHHHHhhhh
Confidence 99999999996533 3355666666555444443 3788899998888777653
No 149
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=72.17 E-value=7.9 Score=33.63 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred cccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhh
Q 002257 295 DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 359 (946)
Q Consensus 295 d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~ 359 (946)
+.|..|.-|++++..++.+++.. .+.+-+-+...+.+...+|. ..+....||+..++.+...
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~-~~~L~~Ri~~tl~k~l~d~~--~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSS-YPTLQPRITRTLLKALLDPK--KPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHHHH
Confidence 45889999999999999998642 22334444444444334443 3788999999999998543
No 150
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=70.63 E-value=2.7e+02 Score=34.35 Aligned_cols=391 Identities=12% Similarity=0.051 Sum_probs=179.4
Q ss_pred HhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHH
Q 002257 275 QKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKE--NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLA 352 (946)
Q Consensus 275 ~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~--~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~a 352 (946)
...+...+..|+.-..| +.+++|-+|.+-+..+...+... +...+.+-..+.... ..|+.+...--.
T Consensus 271 ~~~~s~v~~~~~~L~~D---dqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d--------~~~~v~~~~~~~ 339 (759)
T KOG0211|consen 271 EIVKSEVLPTLIQLLRD---DQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED--------GSWRVSYMVADK 339 (759)
T ss_pred HHHHhhccHHHhhhhhc---chhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC--------hhHHHHHHHhhh
Confidence 34555666667655433 45899999999999999887543 222222222222222 378888877777
Q ss_pred HHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccC----ChhHHHHHHHHHHhcCCCCCCc
Q 002257 353 IGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS----DQNNFRKALHSVVSGLRDPELP 428 (946)
Q Consensus 353 lg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~----~~~~~~~~~~~l~~~L~d~~~~ 428 (946)
...++..+.. .....+....+.. .+++..--.|..+..=...++.+ ++ ..-....+++.+-.+..|++..
T Consensus 340 ~~~L~~~~~~-~~~~~~~~~~~~~----l~~~~~~e~r~a~a~~~~~l~~~-l~~~~~~~i~~~~ilp~~~~lv~d~~~~ 413 (759)
T KOG0211|consen 340 FSELSSAVGP-SATRTQLVPPVSN----LLKDEEWEVRYAIAKKVQKLACY-LNASCYPNIPDSSILPEVQVLVLDNALH 413 (759)
T ss_pred hhhHHHHhcc-ccCcccchhhHHH----HhcchhhhhhHHhhcchHHHhhh-cCcccccccchhhhhHHHHHHHhcccch
Confidence 6666666544 1122222222222 23333333444444444444331 11 1123345678887888888899
Q ss_pred hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHH---HHHHHhhC-CcccccHHHHHHHHHHHHH
Q 002257 429 VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTL---ETIVDKFG-EEMAPYALGLCQNLAAAFW 504 (946)
Q Consensus 429 V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L---~~iv~~~~-~~i~p~~~~l~~~L~~~~~ 504 (946)
||...+.-+............+.+.++..+..+ +.-..+.....+ ........ .++.-+...+...++
T Consensus 414 vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l----~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~---- 485 (759)
T KOG0211|consen 414 VRSALASVITGLSPILPKERTISELLPLLIGNL----KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV---- 485 (759)
T ss_pred HHHHHhccccccCccCCcCcCccccChhhhhhc----chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh----
Confidence 998877766665554432334444444443333 221111111221 11111111 111111111111111
Q ss_pred HHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCC
Q 002257 505 RCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT 584 (946)
Q Consensus 505 ~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~ 584 (946)
.+ .++ .+...++.+++.+-.+..-.+. .-+-+.+-+++..-+.+......+-+..-+..+++.-+
T Consensus 486 el------~~d---~~wRvr~ail~~ip~la~q~~~-----~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G- 550 (759)
T KOG0211|consen 486 EL------AED---LLWRVRLAILEYIPQLALQLGV-----EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG- 550 (759)
T ss_pred hh------ccc---hhHHHHHHHHHHHHHHHHhhhh-----HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-
Confidence 11 110 2233445555655555544321 11223344444444444333444444444444443222
Q ss_pred CCHHHHHHHHHHHHHHhhhHhhhHh--hhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhH
Q 002257 585 ISLEMWSLWPLMMEALADWAIDFFP--NILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKL 662 (946)
Q Consensus 585 i~p~l~~l~~~l~~~~~~~~~~~l~--~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~l 662 (946)
-.=....+.|.++....+. .|.. ..+..+..+.......+ +.+.++.++..+..++ ....+..+++.
T Consensus 551 ~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g~ei-------~~~~Llp~~~~l~~D~--vanVR~nvak~ 619 (759)
T KOG0211|consen 551 SEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLGQEI-------TCEDLLPVFLDLVKDP--VANVRINVAKH 619 (759)
T ss_pred cchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhccHH-------HHHHHhHHHHHhccCC--chhhhhhHHHH
Confidence 1111112233333332211 1332 33344454444433333 4577777777776554 33457789999
Q ss_pred HHHHHHHcccC-chhchHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhCHHHHHHHH
Q 002257 663 IEVVFQNCKGQ-VDHWVEPYLRITVERLRRAEKS---YLKCLLVQVIADALYYNSSLTLSIL 720 (946)
Q Consensus 663 l~~il~~~~~~-~~~~l~~il~~~~~~L~~~~~~---~~~~~~l~v~~~~~~~~~~~~l~~L 720 (946)
+..++..+... .+..+-++++ .|....+. ++..-....+.-+..+.+....+.+
T Consensus 620 L~~i~~~L~~~~~~~~v~pll~----~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d~~~~~ 677 (759)
T KOG0211|consen 620 LPKILKLLDESVRDEEVLPLLE----TLSSDQELDVRYRAILAFGSIELSRLESSLDVRDKK 677 (759)
T ss_pred HHHHHhhcchHHHHHHHHHHHH----HhccCcccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99988887642 3333333333 33333332 3333333444444455555444333
No 151
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=70.09 E-value=48 Score=33.45 Aligned_cols=137 Identities=17% Similarity=0.206 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCC---------
Q 002257 471 EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL--------- 541 (946)
Q Consensus 471 e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~--------- 541 (946)
+.+..++..+.+.++..-.|+...++..|.+ +-. ++ + ......+=++++..+++++..
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~----lr~----~~----~-f~~~~~~e~~lgaAi~amGpe~vL~~lPLn 84 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGD----LRE----SE----D-FSFRKELEQVLGAAIRAMGPEQVLSILPLN 84 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHH----HHc----CC----C-cchHHHHHHHHHHHHHHCCHHHHHHHCCCC
Confidence 5566777778888877766666666665542 221 11 1 112223445566666666421
Q ss_pred ---hhHHHHHHhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHhcC-------C--------CCCHHHHHHHHHHHHHHhh
Q 002257 542 ---PHLFVQIEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFS-------P--------TISLEMWSLWPLMMEALAD 602 (946)
Q Consensus 542 ---~~~~~~l~~~l~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~~-------~--------~i~p~l~~l~~~l~~~~~~ 602 (946)
++....=..-++|++...+.+. ...|.++.+-+...+-... . .+-..+|.++|...+.-.
T Consensus 85 l~~~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~- 163 (198)
T PF08161_consen 85 LDNADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPT- 163 (198)
T ss_pred ccCCCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcc-
Confidence 0001111245889998876654 3455666655555443221 1 112235666666554433
Q ss_pred hHhhhHhhhHHHHHHHHhc
Q 002257 603 WAIDFFPNILVPLDNYISR 621 (946)
Q Consensus 603 ~~~~~l~~~~~~L~~~i~~ 621 (946)
+-.+.++.+.+.|.+.+..
T Consensus 164 D~~~~F~~~a~~L~~~L~~ 182 (198)
T PF08161_consen 164 DLAESFPSFAKLLGNALYD 182 (198)
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 1123445555555555433
No 152
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=69.86 E-value=21 Score=32.06 Aligned_cols=74 Identities=11% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhhC-CcccccHHHHHHHHH
Q 002257 425 PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE-DLVFTLETIVDKFG-EEMAPYALGLCQNLA 500 (946)
Q Consensus 425 ~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e-~l~~~L~~iv~~~~-~~i~p~~~~l~~~L~ 500 (946)
.+..-|..|..|+..++.. .++.+.++.|+|+..|-..+..-+.. ....|-..++...+ +++.|+..+++..+.
T Consensus 27 ~~~~ek~~~l~si~~lI~~--~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKL--GGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred CCHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3455788899999999995 57888888888888888777654332 23466666777765 445555555544443
No 153
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.66 E-value=13 Score=42.25 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=58.4
Q ss_pred CCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 002257 383 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 462 (946)
Q Consensus 383 ~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll 462 (946)
.+-++++|+.....+|-++.-. -.+....++. ..+.|+.--||-.|+.|+.-++-.+ .+.+.|.+..|.+.+.
T Consensus 596 ~shN~hVR~g~AvaLGiacag~--G~~~a~diL~---~L~~D~~dfVRQ~AmIa~~mIl~Q~--n~~Lnp~v~~I~k~f~ 668 (926)
T COG5116 596 ESHNFHVRAGVAVALGIACAGT--GDKVATDILE---ALMYDTNDFVRQSAMIAVGMILMQC--NPELNPNVKRIIKKFN 668 (926)
T ss_pred hccchhhhhhhHHHhhhhhcCC--ccHHHHHHHH---HHhhCcHHHHHHHHHHHHHHHHhhc--CcccChhHHHHHHHHH
Confidence 3567889988888888886522 2223333333 3445777779999999998888774 5778899999999988
Q ss_pred HHHhhhhhhh
Q 002257 463 KLMNEVENED 472 (946)
Q Consensus 463 ~ll~~~~~e~ 472 (946)
+++.+-..+.
T Consensus 669 ~vI~~Khe~g 678 (926)
T COG5116 669 RVIVDKHESG 678 (926)
T ss_pred HHHhhhhHhH
Confidence 8886644333
No 154
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=69.58 E-value=25 Score=31.50 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHcCCC--CCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-
Q 002257 634 YQQSLWSMVSSIMADKN--LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALY- 710 (946)
Q Consensus 634 ~~~~i~~i~~~ll~~~~--~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~- 710 (946)
++=.++..+...+.+.. .+..++..+..-++.++..+++++..++|+|+..+.+.|..++ ++...+..-...+.
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e---L~~~al~~W~~~i~~ 84 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE---LRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHHHh
Confidence 33344455566665443 2334466788889999998887888888888877777775433 33333333222222
Q ss_pred hCHHHHHHHHHhcCchHHHHHHH
Q 002257 711 YNSSLTLSILHKLGVATEVFNLW 733 (946)
Q Consensus 711 ~~~~~~l~~L~~~~~~~~~~~~w 733 (946)
.+++.+-.++++ ....++..|
T Consensus 85 L~~~~l~~ll~~--~~~~i~~~~ 105 (107)
T smart00802 85 LKEEELGPLLDQ--IFAAILPLW 105 (107)
T ss_pred CCHHHHHHHHHH--HHHHHHHhc
Confidence 245555555554 333444443
No 155
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=69.36 E-value=25 Score=31.45 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCCC--Cch--HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh-HHHHHHHHHHhhC
Q 002257 411 FRKALHSVVSGLRDPE--LPV--RVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVDKFG 485 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~--~~V--~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~-l~~~L~~iv~~~~ 485 (946)
..-++...-+.+.|.+ .++ |..|..|+..++.. ....+..+.|+|+..|-..+..-+... -..|-..++....
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~--~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKL--MGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 3334444444555443 444 89999999999997 568899999999998888876433322 3456666666665
Q ss_pred -CcccccHHHHHH
Q 002257 486 -EEMAPYALGLCQ 497 (946)
Q Consensus 486 -~~i~p~~~~l~~ 497 (946)
+++.|...+++.
T Consensus 87 ~~~l~~ll~~~~~ 99 (107)
T smart00802 87 EEELGPLLDQIFA 99 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 344444444433
No 156
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=68.92 E-value=1.9e+02 Score=32.93 Aligned_cols=151 Identities=13% Similarity=0.203 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCc
Q 002257 409 NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE 487 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~ 487 (946)
+++.+++..++..|.| .+...+.-|.+.|+.++.. .+..+..+.+..+.+++..-+....+....+-+........
T Consensus 325 q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~--Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las- 401 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN--QPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS- 401 (516)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh--chHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh-
Confidence 6888999999999997 6788899999999999998 57788888888888888888776665544443332222211
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhH
Q 002257 488 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 567 (946)
Q Consensus 488 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~ 567 (946)
..|.. .+..++. ++.. +++| .+..++..+..+++.+.. +.+-.+.+-+.|.+....++.....
T Consensus 402 ~~P~~--~I~~i~~----~Ilt-~D~~--------~~~~~iKm~Tkl~e~l~~--EeL~~ll~diaP~~iqay~S~SS~V 464 (516)
T KOG2956|consen 402 HLPLQ--CIVNISP----LILT-ADEP--------RAVAVIKMLTKLFERLSA--EELLNLLPDIAPCVIQAYDSTSSTV 464 (516)
T ss_pred hCchh--HHHHHhh----HHhc-Ccch--------HHHHHHHHHHHHHhhcCH--HHHHHhhhhhhhHHHHHhcCchHHh
Confidence 12221 1122222 2221 1222 234577788899988742 2344556667787777776655555
Q ss_pred HHHHHHHHHHHH
Q 002257 568 FEEVLEIVSYMT 579 (946)
Q Consensus 568 ~~~~l~ll~~l~ 579 (946)
.-.+.-.|-++.
T Consensus 465 RKtaVfCLVamv 476 (516)
T KOG2956|consen 465 RKTAVFCLVAMV 476 (516)
T ss_pred hhhHHHhHHHHH
Confidence 544444333433
No 157
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=66.76 E-value=87 Score=36.32 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhh-hhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCC
Q 002257 347 DGALLAIGALCDK-LKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLR 423 (946)
Q Consensus 347 eaal~alg~ia~~-l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~--~~~~~~~~~~l~~~L~ 423 (946)
+-.+..+..+... +.+...-..-+.++ ..|++..+.++..-+|.|+|..+...+++. +. +....-++.-+...+-
T Consensus 65 dRil~fl~~f~~Y~~~~dpeg~~~V~~~-~~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~ 142 (885)
T COG5218 65 DRILSFLKRFFEYDMPDDPEGEELVAGT-FYHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLF 142 (885)
T ss_pred HHHHHHHHHHHHhcCCCChhhhHHHHHH-HHHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHh
Confidence 4455555444443 33322212223444 468888888999999999999999998743 22 2334445555556666
Q ss_pred CCCCchHHHHHHHHHHHHHhc
Q 002257 424 DPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 424 d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
|..+.||..|..+|+.+-+..
T Consensus 143 DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 143 DREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred cchHHHHHHHHHHHHHHHhcc
Confidence 888999999999999997764
No 158
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=66.65 E-value=1.4e+02 Score=29.72 Aligned_cols=125 Identities=18% Similarity=0.305 Sum_probs=66.4
Q ss_pred HHhc-CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHH
Q 002257 418 VVSG-LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC 496 (946)
Q Consensus 418 l~~~-L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~ 496 (946)
++.+ +.|++..||..|+.++..+++.. +||+.. ..+.+ .=...++|+...+.
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gs------k~~L~~--------Ae~~~-------------~~~~sFtslS~tLa 96 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGS------KPFLAQ--------AEESK-------------GPSGSFTSLSSTLA 96 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHcc------HHHHHH--------HHhcC-------------CCCCCcccHHHHHH
Confidence 3444 35999999999999999999873 333222 11110 01124566666665
Q ss_pred HHHHHH---HHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhc---CChhHHHHHHhhHHHHHHHhcccchhhHHHH
Q 002257 497 QNLAAA---FWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS---RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEE 570 (946)
Q Consensus 497 ~~L~~~---~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~---~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~ 570 (946)
..+.+. +...++ .+.+ .-....++.++..++.+.- -.++....+...+.|.+.+ ...+..-.
T Consensus 97 ~~i~~lH~~Ll~~L~-~E~~-------~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~----~d~~v~v~ 164 (182)
T PF13251_consen 97 SMIMELHRGLLLALQ-AEKS-------PPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH----RDPNVRVA 164 (182)
T ss_pred HHHHHHHHHHHHHHh-cccc-------cHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc----CCCcHHHH
Confidence 544432 222232 1111 2233467777877777641 1334444444444444433 33455556
Q ss_pred HHHHHHHHHhc
Q 002257 571 VLEIVSYMTFF 581 (946)
Q Consensus 571 ~l~ll~~l~~~ 581 (946)
++-.++.++-.
T Consensus 165 ~l~~~~~l~s~ 175 (182)
T PF13251_consen 165 ALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHcC
Confidence 66677776643
No 159
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=66.63 E-value=2.2e+02 Score=31.89 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=68.9
Q ss_pred ccCHHHHHHHHHHHHHHhcCcc---cHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcc--hHHH
Q 002257 296 LYSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY--KSEL 370 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~~~~---~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~--~~~l 370 (946)
.+..+.++.+.+...+++|.+. .++.+...+.+.|.+....+. .=..-..|+.-+++++....-.+.+ ...+
T Consensus 109 l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~---~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L 185 (370)
T PF08506_consen 109 LEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPK---YDILVSKALQFLSSVAESPHHKNLFENKPHL 185 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGG---GHHHHHHHHHHHHHHHTSHHHHTTT-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccHHHHHHHHHHHHHHcchhHHHHhCCHHHH
Confidence 3567888888888888888542 334444445556655322221 1122234455555555443211111 2356
Q ss_pred HHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc
Q 002257 371 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI 450 (946)
Q Consensus 371 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l 450 (946)
..++.+.|+|.+. -|-.. .-.|.+ +| .+++..=+.. .| ....|..|+.-++.++... ...+
T Consensus 186 ~~Iie~VI~Pnl~-------~~e~D-~ElfEd----dP---~EYIrrd~e~-sd-~~TrR~AA~dfl~~L~~~~--~~~v 246 (370)
T PF08506_consen 186 QQIIEKVIFPNLC-------LREED-EELFED----DP---EEYIRRDLEG-SD-SDTRRRAACDFLRSLCKKF--EKQV 246 (370)
T ss_dssp HHHHHHTHHHHHS---------HHH-HHHHHH----SH---HHHHHHHSCS-S----SHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhccCccC-------CCHHH-HHHHcc----CH---HHHHHhhccc-cc-cCCcHHHHHHHHHHHHHHH--hHHH
Confidence 6667777776542 11111 001111 11 1222221111 12 3457788999999988774 3444
Q ss_pred ccchHHHHHHHHH
Q 002257 451 RPILPQLLDEFFK 463 (946)
Q Consensus 451 ~p~l~~il~~Ll~ 463 (946)
.+.+...++.++.
T Consensus 247 ~~i~~~~i~~~l~ 259 (370)
T PF08506_consen 247 TSILMQYIQQLLQ 259 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4544445555544
No 160
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.48 E-value=41 Score=31.72 Aligned_cols=124 Identities=14% Similarity=0.180 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc--CCcc----hHHHHHHH
Q 002257 301 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ--TEPY----KSELERML 374 (946)
Q Consensus 301 ~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~--~~~~----~~~l~~~l 374 (946)
.-.+.++..++.+.-..-.+.+++.+.+.+++ +....+..+..+..+.+.+.+ .... ...+..-+
T Consensus 6 ~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~---------~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 6 NKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS---------SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL 76 (148)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChhhCchHHHHHHHHhcc---------chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Confidence 33445555666553122233344444444443 346678888888888888754 1110 11111111
Q ss_pred H-------HhcccCCCC---C-ccchhHHHHHHHHhhhccccCChhHHH--HHHHHHHhcCCCCCCchHHHHHHHH
Q 002257 375 V-------QHVFPEFSS---P-VGHLRAKAAWVAGQYAHINFSDQNNFR--KALHSVVSGLRDPELPVRVDSVFAL 437 (946)
Q Consensus 375 ~-------~~v~p~l~~---~-~~~lr~ra~~~l~~~~~~~f~~~~~~~--~~~~~l~~~L~d~~~~V~~~Aa~Al 437 (946)
. ..+...+.. . ++-+...++.+++.|.. +-+.+... .+++.+++.|++++. +..|+.+|
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~--~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS--WIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT--TS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH--hCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 1 111111221 1 27788899999999976 33553332 388888998966555 88888775
No 161
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=66.46 E-value=3.5e+02 Score=34.08 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHh
Q 002257 409 NNFRKALHSVVS 420 (946)
Q Consensus 409 ~~~~~~~~~l~~ 420 (946)
.....++.+++.
T Consensus 458 a~RkrLvKal~~ 469 (1128)
T KOG2051|consen 458 ANRKRLVKALFV 469 (1128)
T ss_pred HHHHHHHHhhhc
Confidence 344444444443
No 162
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=66.19 E-value=2.4e+02 Score=32.17 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=58.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHhhcCCCCchh----hHHHHHHhcchh----hHHHHHHHHHHHHHhcccCCCcCcchH
Q 002257 7 LVFVAQVPPLLRVQLGECLKTIIHADYPEQWPH----LLDWVKHNLQDQ----QVYGALFVLRILSRKYEFKSDEERTPV 78 (946)
Q Consensus 7 l~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~----Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~~~~~~~~~~l 78 (946)
+..|...+.-|....+.+++.++.+.--..=.. +++.+.+.++++ .+..|++||..+.+.=+|| ..+
T Consensus 107 l~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-----~~f 181 (429)
T cd00256 107 FNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-----FAF 181 (429)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-----HHH
Confidence 344556778899999999999997642211122 334444555432 5677889998888652111 111
Q ss_pred HHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhh
Q 002257 79 YRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL 123 (946)
Q Consensus 79 ~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~ 123 (946)
.. ...++.|..++.... ...++++.++=|++-+++.
T Consensus 182 ~~--~~~v~~L~~~L~~~~-------~~~Ql~Y~~ll~lWlLSF~ 217 (429)
T cd00256 182 VL--ADGVPTLVKLLSNAT-------LGFQLQYQSIFCIWLLTFN 217 (429)
T ss_pred HH--ccCHHHHHHHHhhcc-------ccHHHHHHHHHHHHHHhcc
Confidence 11 113445544444311 1346678888888766544
No 163
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.18 E-value=3.2e+02 Score=33.55 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=91.3
Q ss_pred HhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHhh-hHhhhHhhhHHHHHHHHhcCcc
Q 002257 549 EPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFSPTISLEMWS--LWPLMMEALAD-WAIDFFPNILVPLDNYISRGTA 624 (946)
Q Consensus 549 ~~~l~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~~~~i~p~l~~--l~~~l~~~~~~-~~~~~l~~~~~~L~~~i~~~~~ 624 (946)
...++|++..+|+.+ ..|++--+..-+..+....|.=...+.. ..|.++..+.. ...|.-+..+..|+..-+..+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 356899999998865 3566666777777776665533333333 66777766552 2245555666666666666666
Q ss_pred cccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhh--HHHHHHH
Q 002257 625 HFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKS--YLKCLLV 702 (946)
Q Consensus 625 ~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~--~~~~~~l 702 (946)
..++. +.+..++..+.-. +. ..+..|..+...+-.+++..--.++...+..+.+.|+....+ .....++
T Consensus 289 AiL~A---G~l~a~LsylDFF--Si----~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 289 AILQA---GALSAVLSYLDFF--SI----HAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICL 359 (1051)
T ss_pred HHHhc---ccHHHHHHHHHHH--HH----HHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 66643 4455555544322 11 112335555555555555443445666677777777663333 2333333
Q ss_pred HHHHHHHhhCHHHHHHHHH
Q 002257 703 QVIADALYYNSSLTLSILH 721 (946)
Q Consensus 703 ~v~~~~~~~~~~~~l~~L~ 721 (946)
.-++-.+.++|+.+-++..
T Consensus 360 ~ri~d~f~h~~~kLdql~s 378 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCS 378 (1051)
T ss_pred HHHHHhcccChHHHHHHhc
Confidence 3344445666765554443
No 164
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.84 E-value=50 Score=35.96 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=76.6
Q ss_pred HHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHh
Q 002257 643 SSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHK 722 (946)
Q Consensus 643 ~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~ 722 (946)
...+++...+..+...++.-++.+++++....+=.=-..+..++. .-+.+...+|.....|+..|+-.||..-.++++.
T Consensus 87 ~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~ 165 (342)
T KOG2160|consen 87 IVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIEL 165 (342)
T ss_pred hhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 334555555666677788888888888764211000011222333 2345677899999999999999999999999987
Q ss_pred cCchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhccccC
Q 002257 723 LGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTAD 771 (946)
Q Consensus 723 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~~~~ 771 (946)
| ++...+..+. +=...+.|+=...|+++|+....+
T Consensus 166 -~----~L~~Ll~~ls---------~~~~~~~r~kaL~AissLIRn~~~ 200 (342)
T KOG2160|consen 166 -G----ALSKLLKILS---------SDDPNTVRTKALFAISSLIRNNKP 200 (342)
T ss_pred -c----cHHHHHHHHc---------cCCCchHHHHHHHHHHHHHhcCcH
Confidence 3 4555555555 555677778888999999998754
No 165
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=65.59 E-value=36 Score=42.94 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhcCcccHHH---HHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-CCcchHHHHHHHH
Q 002257 300 RTASMDFVSELVRKRGKENLQK---FIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYKSELERMLV 375 (946)
Q Consensus 300 R~aa~~ll~~l~~~~~~~~l~~---ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-~~~~~~~l~~~l~ 375 (946)
|.-|.-+|..+++.+|...+.. +-+++...++.+... + |.-+.-++..-..... ...+.. +-+ ..
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~-----~----d~~~~s~~vf~s~~~~m~s~l~~-~~~-~l 818 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDG-----N----DEFLSSFEVFNSLAPLMHSFLHP-LGS-LL 818 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCC-----C----cchhhhHHHHHHHHHhhhhhhhh-hhh-hh
Confidence 6677888999999998755433 223333444443211 1 1111111111111000 000000 111 11
Q ss_pred HhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 002257 376 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 455 (946)
Q Consensus 376 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~ 455 (946)
..++..+.++++.+|..|..+++.+.+.- .-+....+++.++..+.+.+..++-.++..+-..+... ....+.||.+
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~-l~~~l~~~~~ 895 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSA--TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV-LMVGLVPYNP 895 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh-hcccccccce
Confidence 23333456789999999999999987633 34788899999999999887777665555554444432 4567889998
Q ss_pred HHHHHHHHHHhhhhh---hhHHHHHHHHHHhh
Q 002257 456 QLLDEFFKLMNEVEN---EDLVFTLETIVDKF 484 (946)
Q Consensus 456 ~il~~Ll~ll~~~~~---e~l~~~L~~iv~~~ 484 (946)
-++.-|+..+..... +....+...++-..
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIPLL 927 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhccc
Confidence 899999988865322 23345555555443
No 166
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=65.49 E-value=2.1e+02 Score=31.13 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=90.8
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHh---cc-hh--------------------------hHH-HHHHHHHH
Q 002257 14 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHN---LQ-DQ--------------------------QVY-GALFVLRI 62 (946)
Q Consensus 14 ~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~---l~-s~--------------------------~~~-~~L~~L~~ 62 (946)
+++-|+-.+.+-..+...|...+|.|+...|.++ ++ +. .|| -||.+-..
T Consensus 2 d~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~ 81 (307)
T PF04118_consen 2 DSKYKKYNAEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEY 81 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 3455666777778888889999999987666444 44 11 243 67777777
Q ss_pred HHHhcccCCCcCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHH-H
Q 002257 63 LSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI-L 141 (946)
Q Consensus 63 i~k~~~~~~~~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~-~ 141 (946)
|++.... ..+..=+..+.|-|+.++... +..++-..+++|.... ..++..+ .+-+. +
T Consensus 82 IF~~ig~------~~L~~dl~i~~~GLfpl~~~a---------si~Vkp~lL~i~e~~~-lpL~~~L------~p~l~~l 139 (307)
T PF04118_consen 82 IFERIGP------DGLAQDLPIYSPGLFPLFSYA---------SIQVKPQLLDIYEKYY-LPLGPAL------RPCLKGL 139 (307)
T ss_pred HHHhcCH------HHHHhhcHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHh-cCccHHH------HHHHHHH
Confidence 7776531 112222334445555554432 4455667777776543 1344332 22222 2
Q ss_pred HHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 002257 142 FLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRI 221 (946)
Q Consensus 142 ~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~ 221 (946)
+..++ | ++. |+. ..+...+++.+..+....|.. .|.+.+|..+-.
T Consensus 140 i~slL----p--GLe-de~-------sE~~~~~~~ll~~l~~~v~~~--------------------~F~~~lwl~ii~- 184 (307)
T PF04118_consen 140 ILSLL----P--GLE-DEG-------SEFFDRTLKLLDKLKEAVGDK--------------------YFWQCLWLCIIT- 184 (307)
T ss_pred HHHhc----c--ccc-cCC-------chHHHHHHHHHHHHHHhcChh--------------------HHHHHHHHHHhc-
Confidence 33333 2 111 111 124456777777666654321 266777776643
Q ss_pred hCCcccCHHHHHHHHHHHHhh
Q 002257 222 RVGGYLPDRVTNLILQYLSNS 242 (946)
Q Consensus 222 ~~~~~~~d~~~~~~l~fl~~~ 242 (946)
++..+.-++.|+..-
T Consensus 185 ------sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 185 ------SPSRRLGALNYLLRR 199 (307)
T ss_pred ------CcchhHHHHHHHHHh
Confidence 346677778887754
No 167
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=65.19 E-value=1.3e+02 Score=33.29 Aligned_cols=173 Identities=16% Similarity=0.234 Sum_probs=88.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHh----hcCCCCchhhHHHHHHhcchh------h-HHHHHHHHHHHHHhcccCCCcC
Q 002257 6 ILVFVAQVPPLLRVQLGECLKTIIH----ADYPEQWPHLLDWVKHNLQDQ------Q-VYGALFVLRILSRKYEFKSDEE 74 (946)
Q Consensus 6 Ll~~l~~~~~~ir~ql~~~is~Ia~----~D~P~~Wp~Ll~~l~~~l~s~------~-~~~~L~~L~~i~k~~~~~~~~~ 74 (946)
+..+|.+....+|+....+++.+.. .+.......++|.+.+.++.. . ..|++.+..-++-.-+.+.+..
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~ 145 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKI 145 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhh
Confidence 3445555555699999999999987 555566777888888888532 1 1222222222222101111100
Q ss_pred cc---hHHHHHHHHhHHHH---HHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcC
Q 002257 75 RT---PVYRIVEETFHHLL---NIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLER 148 (946)
Q Consensus 75 ~~---~l~~i~~~~~p~L~---~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~ 148 (946)
.. ....+...-=|.++ .+++.+. ..+-..-.++.+..+. .+.+....+ +....|.+.++.++..
T Consensus 146 ~~~~~~~~~l~~~~kps~ll~~kvyskl~--------~~~d~~w~~~al~~~~-~~~~~~~~~-~~~~~~~~a~i~ll~s 215 (339)
T PF12074_consen 146 DSKNISFWSLALDPKPSFLLSEKVYSKLA--------SEEDLCWLLRALEALL-SDHPSELSS-DKSSAWAQAFIYLLCS 215 (339)
T ss_pred hhhhhhhhhhccCCCcchhcCHHHHhccC--------CHhHHHHHHHHHHHHH-hcchhhhhh-hHHHHHHHHHHHHHHc
Confidence 00 00000000001100 2222211 1122333333333322 223333322 2358999999988876
Q ss_pred CCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHh
Q 002257 149 PVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 220 (946)
Q Consensus 149 ~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~ 220 (946)
+.+ -+++|+.+.+.+.+++.+. |. .+...++..+|+.+..
T Consensus 216 ~~~---------------~~~vR~~A~~~l~~l~~~~--~~---------------~l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 216 SNV---------------SWKVRRAALSALKKLYASN--PE---------------LLSKSLISGLWKWLSS 255 (339)
T ss_pred CCC---------------CHHHHHHHHHHHHHHHHhC--hH---------------HHHHHHHHHHHHHHHh
Confidence 421 1789999999999999873 21 1344577777887765
No 168
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=64.14 E-value=48 Score=29.67 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcC--CCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hh
Q 002257 635 QQSLWSMVSSIMAD--KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADAL-YY 711 (946)
Q Consensus 635 ~~~i~~i~~~ll~~--~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~-~~ 711 (946)
+=.++..+...+.+ ...+...+..+.+-++.++...++.+..+.|+|+..+-+.+..+ .++...+.+-...+ ..
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~---~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP---ELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHHC
Confidence 33344445555654 23344556788888999999666778888888777766666443 33333333322222 23
Q ss_pred CHHHHHHHHHhcCchHHHHHHH
Q 002257 712 NSSLTLSILHKLGVATEVFNLW 733 (946)
Q Consensus 712 ~~~~~l~~L~~~~~~~~~~~~w 733 (946)
++..+-.++++ +...++..|
T Consensus 86 ~~~~l~~ll~~--~~~~l~~~~ 105 (107)
T PF08064_consen 86 DEEDLGPLLDQ--IFAILLPLW 105 (107)
T ss_pred CHHHHHHHHHH--HHHHHHHhc
Confidence 56666666664 444444444
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=64.14 E-value=28 Score=42.38 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh------hhHHHHHHHHHH
Q 002257 409 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN------EDLVFTLETIVD 482 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~------e~l~~~L~~iv~ 482 (946)
.....+++.++++|.-+|+.||+++..++..++.. .+..+.-|+..++..++.+-..-++ +....||..+.+
T Consensus 905 p~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~--~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 905 PQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE--SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred cchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh--ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 35667899999999989999999999999999987 5677888999999999998866554 223466666666
Q ss_pred hhC-CcccccHHHHHHHHHH
Q 002257 483 KFG-EEMAPYALGLCQNLAA 501 (946)
Q Consensus 483 ~~~-~~i~p~~~~l~~~L~~ 501 (946)
+.. ..+.||-++++..|..
T Consensus 983 ~~P~~~l~~fr~~Vl~al~k 1002 (1030)
T KOG1967|consen 983 RLPTKSLLSFRPLVLRALIK 1002 (1030)
T ss_pred cCCCcccccccHHHHHHhhh
Confidence 554 5678899988887764
No 170
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=64.08 E-value=23 Score=39.64 Aligned_cols=122 Identities=14% Similarity=0.172 Sum_probs=75.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCc--chHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhc---cccCChhHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEP--YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH---INFSDQNNFRKALH 416 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~--~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~---~~f~~~~~~~~~~~ 416 (946)
+-|.|+-++.++|.+.-.+....+ ...-++.=+.+-+--.....+.-+|..||..+|..-+ ++|++..-...+++
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~ 576 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFN 576 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHH
Confidence 567778888888877765432111 1101111111111111112345599999999999743 34666567889999
Q ss_pred HHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh
Q 002257 417 SVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 417 ~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
.++..+.+ .+..||+.||.||..-- .++....+++-....++..+..
T Consensus 577 ~L~~Lv~~~~NFKVRi~AA~aL~vp~----~re~~~d~~~Lsw~~lv~aLi~ 624 (728)
T KOG4535|consen 577 ALTSLVTSCKNFKVRIRAAAALSVPG----KREQYGDQYALSWNALVTALQK 624 (728)
T ss_pred HHHHHHHHhccceEeehhhhhhcCCC----CcccchhHHhHHHHHHHHHHHH
Confidence 99999875 68999999999976422 3455556666677777766644
No 171
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.21 E-value=32 Score=40.80 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=65.1
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
|--.|.||..++|.+... ... . +...|-+.-.+-+|.+|+.|...+|-.+.-. -...++..+=..
T Consensus 568 nDDVrRaAVialGFVl~~---dp~---~----~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-----G~~eAi~lLepl 632 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFR---DPE---Q----LPSTVSLLSESYNPHVRYGAAMALGIACAGT-----GLKEAINLLEPL 632 (929)
T ss_pred chHHHHHHHHHheeeEec---Chh---h----chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-----CcHHHHHHHhhh
Confidence 335666777777765433 110 1 1122222223457888888888888776422 122223333333
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhh
Q 002257 422 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE 471 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e 471 (946)
+.|+.--||-.|+.|+.-+.-. ..+.+-|.+..+-+.+.+.+++-..|
T Consensus 633 ~~D~~~fVRQgAlIa~amIm~Q--~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 633 TSDPVDFVRQGALIALAMIMIQ--QTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred hcChHHHHHHHHHHHHHHHHHh--cccccCchHHHHHHHHHHHhhhhhhH
Confidence 3466566888888888877665 35677788888888887777654333
No 172
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=62.22 E-value=7 Score=47.94 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHH
Q 002257 633 DYQQSLWSMVSSI 645 (946)
Q Consensus 633 ~~~~~i~~i~~~l 645 (946)
.|.+.++.+|.-+
T Consensus 1530 Rf~qat~qVFhaL 1542 (3015)
T KOG0943|consen 1530 RFLQATAQVFHAL 1542 (3015)
T ss_pred HHHHHHHHHHhhe
Confidence 4566666665544
No 173
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=61.73 E-value=2.5e+02 Score=32.38 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=56.5
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhcccc-CCh-hHHHHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF-SDQ-NNFRKALHSVV 419 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f-~~~-~~~~~~~~~l~ 419 (946)
-++.|=+|-.|+|.+...+.+. .+..++.+.+.+.|++++..=|--|+.++..|+...- ..+ .....+-..+.
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~-----~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPES-----SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 4788999999999999998542 3445555567888999999999999999999986321 111 11245556666
Q ss_pred hcCCCCCC
Q 002257 420 SGLRDPEL 427 (946)
Q Consensus 420 ~~L~d~~~ 427 (946)
.+|.++.+
T Consensus 175 ~~L~~~~~ 182 (441)
T PF12054_consen 175 EILENPEP 182 (441)
T ss_pred HHHcCCCC
Confidence 66664433
No 174
>PF05536 Neurochondrin: Neurochondrin
Probab=61.39 E-value=3.4e+02 Score=32.24 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHH
Q 002257 524 AVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-----TISLEMWSLWPLMME 598 (946)
Q Consensus 524 ~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~-----~i~p~l~~l~~~l~~ 598 (946)
...+++++..+..+ .+- ...-++.-.+|.+..++.+ .....+.++.+|..++.... .-+..+..+.+.+.+
T Consensus 116 v~dalqcL~~Ias~-~~G--~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~ 191 (543)
T PF05536_consen 116 VDDALQCLLAIASS-PEG--AKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLAR 191 (543)
T ss_pred HHHHHHHHHHHHcC-cHh--HHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHH
Confidence 44677777777732 211 1222344566777777665 34457888999998876542 122233455555555
Q ss_pred HHhhhHhhhHhhhHHHHHHHHhcCccc-ccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHccc
Q 002257 599 ALADWAIDFFPNILVPLDNYISRGTAH-FLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG 672 (946)
Q Consensus 599 ~~~~~~~~~l~~~~~~L~~~i~~~~~~-~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~ 672 (946)
.+......---+++..|.+|+...+.. .....++.....+...+..++.++ .....+..+..+...++..+|.
T Consensus 192 ~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr-~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 192 DFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR-LTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCh
Confidence 544211111123467777777766311 111245577888888888888765 4555567788999999998875
No 175
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.12 E-value=51 Score=39.48 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred ccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHH
Q 002257 294 EDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERM 373 (946)
Q Consensus 294 ~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~ 373 (946)
+..+.-+++..+.+..+.+..++.--..+-..|.=+. +....+-+.+.++.+...+.....-...+--.
T Consensus 403 eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIE-----------Dce~~~i~~rILhlLG~EgP~a~~Pskyir~i 471 (865)
T KOG1078|consen 403 EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIE-----------DCEFTQIAVRILHLLGKEGPKAPNPSKYIRFI 471 (865)
T ss_pred ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH-----------hccchHHHHHHHHHHhccCCCCCCcchhhHHH
Q ss_pred HHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccc
Q 002257 374 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 453 (946)
Q Consensus 374 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~ 453 (946)
.+..++ .+.++|+.|.-++.+|+ +.++.....+...+..|+.|.+.-||-.|..++..+-+. ......|+
T Consensus 472 yNRviL-----En~ivRaaAv~alaKfg---~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~--~~~l~~~~ 541 (865)
T KOG1078|consen 472 YNRVIL-----ENAIVRAAAVSALAKFG---AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK--DDVLNQNY 541 (865)
T ss_pred hhhhhh-----hhhhhHHHHHHHHHHHh---cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh--hhhhcccc
Q ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHH
Q 002257 454 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALG 494 (946)
Q Consensus 454 l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~ 494 (946)
..+...+...|.+-.-.+++.+-..|.-...|+..+
T Consensus 542 -----~~l~~s~~~le~~l~~y~~~~~~~~fd~~~v~~~s~ 577 (865)
T KOG1078|consen 542 -----SGLFVSIPGLERSLVSYITGSFATPFDIKSVPVKSQ 577 (865)
T ss_pred -----cccccccchhHHHHHHHhhccccccchhhcchhhcc
No 176
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=56.43 E-value=2.7e+02 Score=29.55 Aligned_cols=161 Identities=11% Similarity=0.135 Sum_probs=78.7
Q ss_pred HHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHhhhH-----hhhHhhhHHHHH
Q 002257 548 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF------SPTISLEMWSLWPLMMEALADWA-----IDFFPNILVPLD 616 (946)
Q Consensus 548 l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~------~~~i~p~l~~l~~~l~~~~~~~~-----~~~l~~~~~~L~ 616 (946)
+..-++|++...-. ...++..++.|+..++.- ..+-++.-+..++.+.+.+.+.. ...+..++..+.
T Consensus 42 v~~DLiPiL~~~~~--~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~ 119 (266)
T PF04821_consen 42 VQKDLIPILISYKD--DDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLL 119 (266)
T ss_pred hhhhHHHHHHhccC--chHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 34568898877643 456777888888888741 11123344555555555444322 233444444444
Q ss_pred HHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCccc--CchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhh
Q 002257 617 NYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDI--EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK 694 (946)
Q Consensus 617 ~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~--~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~ 694 (946)
..+.......-. .+...++.++..+..++.-+....... .....+-..++..+... .++..++.-.++...
T Consensus 120 ~~l~~~~~~rt~-~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~------~v~~lLL~l~s~~~~ 192 (266)
T PF04821_consen 120 PPLEKDWEDRTE-RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFES------GVLDLLLTLASSPQE 192 (266)
T ss_pred HHhhcccccCCH-HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHc------CHHHHHHHHHhCccc
Confidence 444333222110 223567778888887775332111111 12233444444444321 233333333333323
Q ss_pred hHHHHHHHHHHHHHHh-hCHHHHH
Q 002257 695 SYLKCLLVQVIADALY-YNSSLTL 717 (946)
Q Consensus 695 ~~~~~~~l~v~~~~~~-~~~~~~l 717 (946)
..+...++++|..++. .+|..++
T Consensus 193 ~~f~~~lLEIi~ll~k~~~p~~L~ 216 (266)
T PF04821_consen 193 SDFNLLLLEIIYLLFKGQDPESLA 216 (266)
T ss_pred cchhhHHHHHHHHHHcCCCHHHHh
Confidence 4455577777776664 3555443
No 177
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.09 E-value=4.3e+02 Score=31.76 Aligned_cols=113 Identities=14% Similarity=0.291 Sum_probs=68.2
Q ss_pred cCHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 375 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~-~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~ 375 (946)
.|+|.-|.+||-.+|..- .+.++..+++|+... +...||-...-++.+++..- .++ .|+.
T Consensus 383 vSirrravDLLY~mcD~~Nak~IV~elLqYL~tA------------d~sireeivlKvAILaEKyA------tDy-~WyV 443 (938)
T KOG1077|consen 383 VSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETA------------DYSIREEIVLKVAILAEKYA------TDY-SWYV 443 (938)
T ss_pred hHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhc------------chHHHHHHHHHHHHHHHHhc------CCc-chhH
Confidence 788999999999999853 466766777655431 56778888888888888642 122 3443
Q ss_pred HhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc
Q 002257 376 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI 450 (946)
Q Consensus 376 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l 450 (946)
..++..+ | ..| .+.+++.+..+++.+++ +.-|+-+||..+...+..+..++.+
T Consensus 444 dviLqLi-------r-----iag-----d~vsdeVW~RvvQiVvN-----nedlq~yaak~~fe~Lq~~a~hE~m 496 (938)
T KOG1077|consen 444 DVILQLI-------R-----IAG-----DYVSDEVWYRVVQIVVN-----NEDLQGYAAKRLFEYLQKPACHENM 496 (938)
T ss_pred HHHHHHH-------H-----Hhc-----ccccHHHHHHhheeEec-----chhhhHHHHHHHHHHHhhhHHHHHH
Confidence 3333221 1 222 23345555555554443 3447888888877777665444433
No 178
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.11 E-value=3.8e+02 Score=30.80 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh-H---HHHHHHHHHhh
Q 002257 409 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-L---VFTLETIVDKF 484 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~-l---~~~L~~iv~~~ 484 (946)
..+.+++..+.+...|++-.+|-.||+.|.+.... .+...+.|-+.++..+..-+-.-.++. . +.+|..+.+..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~--~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG--APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc--CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 67889999999999999889999999999999887 467777777777777776665443333 2 34444444443
Q ss_pred -CCcccccHHHHHHHHHH
Q 002257 485 -GEEMAPYALGLCQNLAA 501 (946)
Q Consensus 485 -~~~i~p~~~~l~~~L~~ 501 (946)
...+.+|...+.-++.+
T Consensus 332 ~~~~l~~~~l~ialrlR~ 349 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRT 349 (533)
T ss_pred hhcchhhhchhHHHHHHH
Confidence 46788888888777763
No 179
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=55.04 E-value=92 Score=30.22 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002257 523 AAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 579 (946)
Q Consensus 523 ~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~ 579 (946)
....+++++..++.+++.. + ..+-+.++|.+..++.+-.....|..|+-++.++
T Consensus 103 ~h~~vv~ai~~If~~l~~~--c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 103 HHTAVVQAIMYIFKSLGLK--C-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhcCcC--c-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3446788888888776432 2 3445667777777776544466677776666655
No 180
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=55.04 E-value=4.8e+02 Score=32.00 Aligned_cols=240 Identities=14% Similarity=0.165 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHH-
Q 002257 299 PRTASMDFVSELVRKR-------GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL- 370 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~-------~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l- 370 (946)
....+..||..|+-.. ...+++.+. ..+.+ ++-.....++.++..++..-.- +..|
T Consensus 306 llil~v~fLkkLSi~~ENK~~m~~~giV~kL~----kLl~s--------~~~~l~~~aLrlL~NLSfd~~~----R~~mV 369 (708)
T PF05804_consen 306 LLILAVTFLKKLSIFKENKDEMAESGIVEKLL----KLLPS--------ENEDLVNVALRLLFNLSFDPEL----RSQMV 369 (708)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH----HHhcC--------CCHHHHHHHHHHHHHhCcCHHH----HHHHH
Confidence 4455666776665422 123444444 33332 2456788899988888865211 1111
Q ss_pred HHHHHHhcccCCCCCccchhHHHHHHHHhhhcc-ccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhccccc
Q 002257 371 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI-NFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLN 448 (946)
Q Consensus 371 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~-~f~~~~~~~~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~~~~~ 448 (946)
..-+.+.+.+.+.+++ .|.-|+.++.+.|.- ..+..=....+++.+++.|. .++..|...++..+.++..+....+
T Consensus 370 ~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaq 447 (708)
T PF05804_consen 370 SLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQ 447 (708)
T ss_pred HCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHH
Confidence 0001123333444332 334455666555431 11111011245666666654 4566677766666667666543222
Q ss_pred ccc--cchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhC---CcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHH
Q 002257 449 EIR--PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG---EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALA 523 (946)
Q Consensus 449 ~l~--p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~---~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~ 523 (946)
.+. ..++.++...+ +.....++.++..+..+=+ ..+.+|...++ .+... + +..-+
T Consensus 448 lm~~g~gL~~L~~ra~----~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~--------~~v~~----~----~~ee~ 507 (708)
T PF05804_consen 448 LMCEGNGLQSLMKRAL----KTRDPLLLKLIRNISQHDGPLKELFVDFIGDLA--------KIVSS----G----DSEEF 507 (708)
T ss_pred HHHhcCcHHHHHHHHH----hcccHHHHHHHHHHHhcCchHHHHHHHHHHHHH--------HHhhc----C----CcHHH
Confidence 222 22344444432 3333445666666654421 11222333222 22221 1 11123
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccch--hhHHHHHHHHHHHHH
Q 002257 524 AVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDG--QEVFEEVLEIVSYMT 579 (946)
Q Consensus 524 ~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~--~~~~~~~l~ll~~l~ 579 (946)
...|+.+++.+-.. +.....-+ +..++|.+...|.+.. .+..-++..+++++.
T Consensus 508 ~vE~LGiLaNL~~~---~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 508 VVECLGILANLTIP---DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHhcccC---CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 44455544444321 11112222 2479999999998653 367777777777765
No 181
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=54.71 E-value=2.9e+02 Score=29.30 Aligned_cols=144 Identities=16% Similarity=0.203 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCCCC-C---chHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCC
Q 002257 411 FRKALHSVVSGLRDPE-L---PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 486 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~-~---~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~ 486 (946)
....+|.+++.+.++. + .-...+|.+|...++... .|.+..+|..+.+---+...+.+..+...+-+.|-.
T Consensus 109 ~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-----~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P 183 (262)
T PF14225_consen 109 LLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-----LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFP 183 (262)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-----CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCc
Confidence 3455667777776555 1 344677888888886542 245555655554422222233344555555444422
Q ss_pred cccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhh
Q 002257 487 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQE 566 (946)
Q Consensus 487 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~ 566 (946)
+ |..+++..|. .+..+ . .......+++.+..++..+.-... .-.+.+.|+++.. + .+
T Consensus 184 ~---~~~~~l~~Ll----~lL~n---~------~~w~~~~~L~iL~~ll~~~d~~~~---~~~dlispllrlL-~---t~ 240 (262)
T PF14225_consen 184 D---HEFQILTFLL----GLLEN---G------PPWLRRKTLQILKVLLPHVDMRSP---HGADLISPLLRLL-Q---TD 240 (262)
T ss_pred h---hHHHHHHHHH----HHHhC---C------cHHHHHHHHHHHHHHhccccCCCC---cchHHHHHHHHHh-C---Cc
Confidence 2 3344444444 44431 1 134556788888888888743221 2223455655554 3 25
Q ss_pred HHHHHHHHHHHHHhcC
Q 002257 567 VFEEVLEIVSYMTFFS 582 (946)
Q Consensus 567 ~~~~~l~ll~~l~~~~ 582 (946)
+-.+|++++...+..+
T Consensus 241 ~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 241 LWMEALEVLDEIVTRS 256 (262)
T ss_pred cHHHHHHHHHHHHhhc
Confidence 7788999998887654
No 182
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.89 E-value=9.4e+02 Score=35.03 Aligned_cols=89 Identities=16% Similarity=0.258 Sum_probs=50.4
Q ss_pred HHhhhccccCChh--HHHHHHHHHHhcCCCCCCc-hHHHHHHHHHH----HHHhcccccccccchHHHHHHHHHHHhhhh
Q 002257 397 AGQYAHINFSDQN--NFRKALHSVVSGLRDPELP-VRVDSVFALRS----FVEACRDLNEIRPILPQLLDEFFKLMNEVE 469 (946)
Q Consensus 397 l~~~~~~~f~~~~--~~~~~~~~l~~~L~d~~~~-V~~~Aa~Al~~----~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~ 469 (946)
++.+-+..|.+++ .+..+++.+++.+.+..+. -+..+..=|+. ++......+.++||...++..+++++..-.
T Consensus 31 ~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e~~~~~~~~~~~~~~~vl~~dN 110 (3550)
T KOG0889|consen 31 IRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNEVFKPFSQELLKVLMRVLTNDN 110 (3550)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333344442 2466677777777654333 12222222222 233333668999999999999999996543
Q ss_pred hhhHHHHHHHHHHhhC
Q 002257 470 NEDLVFTLETIVDKFG 485 (946)
Q Consensus 470 ~e~l~~~L~~iv~~~~ 485 (946)
.|...-||..+...++
T Consensus 111 een~~l~lkii~~l~r 126 (3550)
T KOG0889|consen 111 EENAILCLKIITDLFR 126 (3550)
T ss_pred chhhhhHHHHHHHHHH
Confidence 3445566666665554
No 183
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.34 E-value=3.2e+02 Score=33.38 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=82.9
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHH
Q 002257 415 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALG 494 (946)
Q Consensus 415 ~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~ 494 (946)
+.-++..|.+++.-|...+-..+...+... ++. .++..|+...-+..+...+.+|-.+ + .|+...
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~--~~~------~l~~~l~~y~~~t~s~~~~~il~~~----~---~P~~K~ 70 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSD--REP------WLVNGLVDYYLSTNSQRALEILVGV----Q---EPHDKH 70 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhcc--chH------HHHHHHHHHHhhcCcHHHHHHHHhc----C---CccHHH
Confidence 344566677777777777777777666652 221 3566666555444444444444322 2 466667
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchh-hHHHHHHH
Q 002257 495 LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLE 573 (946)
Q Consensus 495 l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~-~~~~~~l~ 573 (946)
++..|-..|.+ + -.+..++..++.+|+. ..|.++.-+...+++-+..||..+.. -.+..|+-
T Consensus 71 ~~~~l~~~~~~--------~-------~~Rl~~L~Ll~~~v~~--qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~ 133 (668)
T PF04388_consen 71 LFDKLNDYFVK--------P-------SYRLQALTLLGHFVRS--QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALL 133 (668)
T ss_pred HHHHHHHHHcC--------c-------hhHHHHHHHHHHHHhc--CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHH
Confidence 77666543321 1 2355667777777775 23445555666788888888876532 33444555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH
Q 002257 574 IVSYMTFFSPTISLEMWSLWPLMMEA 599 (946)
Q Consensus 574 ll~~l~~~~~~i~p~l~~l~~~l~~~ 599 (946)
++..++ |.++..+...+|.|+.+
T Consensus 134 ~LimlL---P~ip~~l~~~L~~Lf~I 156 (668)
T PF04388_consen 134 VLIMLL---PHIPSSLGPHLPDLFNI 156 (668)
T ss_pred HHHHHh---ccccchhhHHHHHHHHH
Confidence 555444 44443333333444333
No 184
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=52.80 E-value=4.4e+02 Score=30.85 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=51.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh---hhHHHHHHHHHH
Q 002257 406 SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVD 482 (946)
Q Consensus 406 ~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~---e~l~~~L~~iv~ 482 (946)
++++.+.++.+.+-..+.|.---|.+.||++++.|....- .+ .++.+.++.|-.++..... =..+++|..+..
T Consensus 257 ~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 257 ENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV-GS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred hChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 4667888999999999999878899999999999887642 22 2334445555444433211 124566666665
Q ss_pred hhCCcc
Q 002257 483 KFGEEM 488 (946)
Q Consensus 483 ~~~~~i 488 (946)
.+.+.+
T Consensus 333 ~~P~kv 338 (898)
T COG5240 333 KYPQKV 338 (898)
T ss_pred hCCcee
Confidence 555443
No 185
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=51.22 E-value=4e+02 Score=29.91 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=44.8
Q ss_pred chhHhHHHHHHHHHHhhhh--cCCcchHHH---HHHHHHhcccCCCCCcc---chhHHHHHHHHhhhc----cccCChhH
Q 002257 343 YRQKDGALLAIGALCDKLK--QTEPYKSEL---ERMLVQHVFPEFSSPVG---HLRAKAAWVAGQYAH----INFSDQNN 410 (946)
Q Consensus 343 ~~~keaal~alg~ia~~l~--~~~~~~~~l---~~~l~~~v~p~l~~~~~---~lr~ra~~~l~~~~~----~~f~~~~~ 410 (946)
-...||-....+.+...-. +.......+ -+++...+........| -|-..|+.++|.+-. ...-+.+.
T Consensus 8 ~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~ 87 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDF 87 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHH
Confidence 3556666666666654421 111122222 23344444322222333 477788899988742 11223345
Q ss_pred HHHHHHHHHhcCCCCCC
Q 002257 411 FRKALHSVVSGLRDPEL 427 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~~ 427 (946)
..-++...+..+.++..
T Consensus 88 ~~~~i~~~i~~l~~~~~ 104 (372)
T PF12231_consen 88 ASFIIDHSIESLQNPNS 104 (372)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 55688888888876543
No 186
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=47.99 E-value=46 Score=36.62 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=54.9
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhc--cccC--Ch-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH--INFS--DQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~--~~f~--~~-~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
+.+.|+. +.-..+.+++-+.|+.+..++|.+-. ..|. .. -.-..-+..++.+|.|++..+|..|-+.++-|+.+
T Consensus 206 n~d~ff~-~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 206 NYDRFFQ-KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp THHHHHH-HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHH-HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 4556555 44556788999999999999999842 1110 00 11235678889999999999999999999999999
Q ss_pred ccccccccc
Q 002257 444 CRDLNEIRP 452 (946)
Q Consensus 444 ~~~~~~l~p 452 (946)
+.-+..+..
T Consensus 285 p~K~~~I~~ 293 (335)
T PF08569_consen 285 PNKPPPIVD 293 (335)
T ss_dssp SS-BHHHHH
T ss_pred CCCChHHHH
Confidence 753333333
No 187
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=47.93 E-value=35 Score=33.25 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhcCCCCc-----hhhHHHHHHhcchh---hHHHHHHHHHHHHHhcc
Q 002257 19 VQLGECLKTIIHADYPEQW-----PHLLDWVKHNLQDQ---QVYGALFVLRILSRKYE 68 (946)
Q Consensus 19 ~ql~~~is~Ia~~D~P~~W-----p~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~ 68 (946)
..++.+++.+....=|+.| ++++|.+..+|+|. .+.+||.+|..+++.|.
T Consensus 44 svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 44 SVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred hHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 3457788888865567778 68999999999988 68899999999999864
No 188
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=47.49 E-value=15 Score=25.73 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.6
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 002257 414 ALHSVVSGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 414 ~~~~l~~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
+++.++++|++++..++..|+.||.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777787777889999999998875
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.57 E-value=5.3e+02 Score=32.62 Aligned_cols=179 Identities=20% Similarity=0.249 Sum_probs=101.7
Q ss_pred chhhHHHHHHHHHhcccccCh-hhHhhhhcChHHHHHhhcccccccc-CHHHHHHHHHHHHHHhcCc---ccH-HHHHHH
Q 002257 252 LQPRLDVLLFEIVFPLMCFND-NDQKLWDEDPHEYVRKGYDIIEDLY-SPRTASMDFVSELVRKRGK---ENL-QKFIQF 325 (946)
Q Consensus 252 l~~~l~~li~~ii~p~l~lt~-~d~e~we~Dp~efi~~~~d~~~d~~-s~R~aa~~ll~~l~~~~~~---~~l-~~ll~~ 325 (946)
++|.|..|...++ ...+ .+.++..+.-..|.-...+...... --|.-|+=.|..++..|+. ..+ ..+++.
T Consensus 528 LrpiLVFIWAKIL----AvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~i 603 (1387)
T KOG1517|consen 528 LRPILVFIWAKIL----AVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGI 603 (1387)
T ss_pred hhhhHHHHHHHHH----hcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHH
Confidence 3455555555433 3332 3566777665555544443311111 3477777778888887742 222 356667
Q ss_pred HHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccc-
Q 002257 326 IVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN- 404 (946)
Q Consensus 326 i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~- 404 (946)
|.+.++.. ..|..|-=+...+|-+=+...+.. +. -....-...+...+.++-|-+|+.|...+|.|-...
T Consensus 604 Cle~lnd~-------~~pLLrQW~~icLG~LW~d~~~Ar-w~-G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~ 674 (1387)
T KOG1517|consen 604 CLEHLNDD-------PEPLLRQWLCICLGRLWEDYDEAR-WS-GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGS 674 (1387)
T ss_pred HHHHhcCC-------ccHHHHHHHHHHHHHHhhhcchhh-hc-cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccc
Confidence 76766542 157888888888888765532211 00 001111233445677899999999999999985421
Q ss_pred --cCCh-hHH-------------H----HHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 405 --FSDQ-NNF-------------R----KALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 405 --f~~~-~~~-------------~----~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
|..+ ... . .....++..++|..+.||.+-+.+|..+...
T Consensus 675 d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 675 DNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred cccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 3221 111 1 1112445556677788888888888877654
No 190
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=45.08 E-value=35 Score=41.49 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=60.7
Q ss_pred cchhHHHHHHHHhhhccccCCh----hHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 002257 387 GHLRAKAAWVAGQYAHINFSDQ----NNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 461 (946)
Q Consensus 387 ~~lr~ra~~~l~~~~~~~f~~~----~~~~~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~L 461 (946)
|--|-.++-++|.|..- +++ -.-..++..+++||. |.+.+|-..|..+|-.++.. .+..+.||++.++..+
T Consensus 82 ~~~Rl~~L~Ll~~~v~~--qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~--ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRS--QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH--IPSSLGPHLPDLFNIF 157 (668)
T ss_pred chhHHHHHHHHHHHHhc--CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHH
Confidence 44567788888888541 122 112367888999987 88999999999999999998 6789999999999999
Q ss_pred HHHHhh
Q 002257 462 FKLMNE 467 (946)
Q Consensus 462 l~ll~~ 467 (946)
..++.-
T Consensus 158 ~Rl~~W 163 (668)
T PF04388_consen 158 GRLLSW 163 (668)
T ss_pred HHHHHc
Confidence 999853
No 191
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=44.29 E-value=3.4e+02 Score=28.63 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=70.0
Q ss_pred HhHHHHHHHHHHhhhhc--CCcchHHHHHHHHHhcccCCCCC-c---cchhHHHH---HHHHhhhccccCChhHHHHHHH
Q 002257 346 KDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFSSP-V---GHLRAKAA---WVAGQYAHINFSDQNNFRKALH 416 (946)
Q Consensus 346 keaal~alg~ia~~l~~--~~~~~~~l~~~l~~~v~p~l~~~-~---~~lr~ra~---~~l~~~~~~~f~~~~~~~~~~~ 416 (946)
-++++-.+..++..+.. ...+..-...|+... +..+.+. . .+.|+.|- .+.+-...-.=.....+...+.
T Consensus 114 fe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~-l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~ 192 (255)
T PF10350_consen 114 FESVYPGFTALCRRLWSSNNPELSELPEEWLDEL-LEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMK 192 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHH-HHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 57777788888887763 223332334555433 3334433 1 24555442 2222232211011146777777
Q ss_pred HHHhcCCCCC--------CchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHH
Q 002257 417 SVVSGLRDPE--------LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 465 (946)
Q Consensus 417 ~l~~~L~d~~--------~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll 465 (946)
.+++.-..+. -.-|++|...|+.++.+....+.+.||+++.+..-+.-+
T Consensus 193 ~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f 249 (255)
T PF10350_consen 193 SLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGF 249 (255)
T ss_pred HHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC
Confidence 7777655432 247899999999999998778888899888876655443
No 192
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=43.95 E-value=2.5e+02 Score=27.92 Aligned_cols=143 Identities=15% Similarity=0.213 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhccc-----CCCCc------CCCCchhHhHHHHHHHHHHhhhhc-----
Q 002257 299 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY-----DETPV------EYKPYRQKDGALLAIGALCDKLKQ----- 362 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~-----~~~~~------~~~~~~~keaal~alg~ia~~l~~----- 362 (946)
+|.+|..+|.++++..++..+ .+|-...+-+. ...+. ...+.|.|=+|+.++..+-++...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l---~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSL---FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCcee---HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 699999999999999444333 33333333222 11110 123679999999999999887421
Q ss_pred --CC----cc---hHHHHHHH---HHhcccCCCC-CccchhHHHHHHHHhhhcc-cc--CChhHHHHHHHHHHhcCCCCC
Q 002257 363 --TE----PY---KSELERML---VQHVFPEFSS-PVGHLRAKAAWVAGQYAHI-NF--SDQNNFRKALHSVVSGLRDPE 426 (946)
Q Consensus 363 --~~----~~---~~~l~~~l---~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~-~f--~~~~~~~~~~~~l~~~L~d~~ 426 (946)
.+ .+ ...+..++ ...++-.++. .++-+-...+++++-.... .| -+.+.+..++..+...+.+.|
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 11 11 11222222 2222223332 3444555788888877442 12 134788888888888888889
Q ss_pred CchHHHHHHHHHHHHHhc
Q 002257 427 LPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 427 ~~V~~~Aa~Al~~~~~~~ 444 (946)
..|++.|..++..++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999999888764
No 193
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=43.04 E-value=26 Score=24.92 Aligned_cols=29 Identities=14% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCCCchHHHHHHHHHHHhhcChHHHHHHH
Q 002257 879 IDEVDPFVFFVDTIKVMQASDPLRFQNLT 907 (946)
Q Consensus 879 l~~~d~~~~~~~~l~~~~~~~~~~~~~l~ 907 (946)
++.+|++.|+...|..+.......+..++
T Consensus 8 ~ngv~P~~yL~~vL~~i~~~~~~~~~~LL 36 (39)
T PF13817_consen 8 LNGVNPYAYLTDVLERIPNHPANDIDELL 36 (39)
T ss_pred HcCCCHHHHHHHHHHHHccCCHHHHHHhC
Confidence 45789999999999999885556665553
No 194
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=42.82 E-value=5.2e+02 Score=28.82 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 389 LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 389 lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
-++-|..+|++|-.. | |+.....+.+-+.+..|.+.-||.+|+.-|-.||..
T Consensus 40 ~k~lasq~ip~~fk~-f--p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKH-F--PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHhh-C--chhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 455677888888652 3 357888999999999999999999999999999876
No 195
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=42.81 E-value=97 Score=35.24 Aligned_cols=76 Identities=20% Similarity=0.105 Sum_probs=52.4
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+...|.+++.++|... ..++ ..+.+.+++++|.+|+.|+.++|.+.... . .+.+...
T Consensus 130 ~p~vR~aal~al~~r~-----~~~~---------~~L~~~L~d~d~~Vra~A~raLG~l~~~~-----a----~~~L~~a 186 (410)
T TIGR02270 130 EPPGRAIGLAALGAHR-----HDPG---------PALEAALTHEDALVRAAALRALGELPRRL-----S----ESTLRLY 186 (410)
T ss_pred ChHHHHHHHHHHHhhc-----cChH---------HHHHHHhcCCCHHHHHHHHHHHHhhcccc-----c----hHHHHHH
Confidence 5677888887766621 1111 12344567899999999999999886422 1 2234455
Q ss_pred CCCCCCchHHHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRSF 440 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~ 440 (946)
+.|.+..||..|+.++..+
T Consensus 187 l~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 187 LRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HcCCCHHHHHHHHHHHHHc
Confidence 8899999999999998544
No 196
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=42.67 E-value=1.1e+03 Score=32.54 Aligned_cols=261 Identities=9% Similarity=0.061 Sum_probs=121.5
Q ss_pred HHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhH---HHHHHHHHHhhCCccc
Q 002257 414 ALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDL---VFTLETIVDKFGEEMA 489 (946)
Q Consensus 414 ~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l---~~~L~~iv~~~~~~i~ 489 (946)
++..+...|. ..+..||.....++..++... .+.|+.-=..++..|-.....-..+.+ ..++..|+..+-..+.
T Consensus 1183 fLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~--~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~ 1260 (1780)
T PLN03076 1183 FMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR--VNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYIT 1260 (1780)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH--HhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3333333343 345678888999999888874 355565555565555544432222222 2334444433222221
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHH-HHHHHh-hcC----------------------C-hh-
Q 002257 490 PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAI-STILES-VSR----------------------L-PH- 543 (946)
Q Consensus 490 p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti-~~ll~~-~~~----------------------~-~~- 543 (946)
..-......++.++....++. .+. +..+.+...|..+ ..+++. +.. . +.
T Consensus 1261 ~~~~~~F~DlV~cL~~Fa~q~-~~~----nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 1335 (1780)
T PLN03076 1261 ETETTTFTDCVNCLIAFTNSR-FNK----DISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEF 1335 (1780)
T ss_pred ccchhHHHHHHHHHHHHHhCc-Ccc----cccHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 100123333444444444321 122 4556666665544 222221 000 0 00
Q ss_pred -HHHHHHhhHHHHHHHh---cccchhhHHHHHHHHHHHH-HhcCCCCCHHHH-HHHHHH----HHHHhh-------h---
Q 002257 544 -LFVQIEPTLLPIMRRM---LTTDGQEVFEEVLEIVSYM-TFFSPTISLEMW-SLWPLM----MEALAD-------W--- 603 (946)
Q Consensus 544 -~~~~l~~~l~p~i~~~---l~~~~~~~~~~~l~ll~~l-~~~~~~i~p~l~-~l~~~l----~~~~~~-------~--- 603 (946)
-.......-+|++... ...+-.+....+++.+-.+ ..+...++|..| .+|..+ +..+.. +
T Consensus 1336 ~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~ 1415 (1780)
T PLN03076 1336 TDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPE 1415 (1780)
T ss_pred ccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 0011123445665443 2233446666677655433 345678999888 444422 222110 0
Q ss_pred -----------H-hhhH-hhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHc
Q 002257 604 -----------A-IDFF-PNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 670 (946)
Q Consensus 604 -----------~-~~~l-~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~ 670 (946)
+ ...+ +.+..+|++.+..-...|- .-...+..++..+..++..+ .+.-+..|..++..++...
T Consensus 1416 ~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd--~L~~~L~~~l~ll~~ci~q~--n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1416 GQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYP--TVNPLLKKVLMLLVSFIKRP--HQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHHHHHHh
Confidence 0 1122 4555555555443322221 11134566666666666433 2333456788888888888
Q ss_pred ccCch-hchHHHHHHH
Q 002257 671 KGQVD-HWVEPYLRIT 685 (946)
Q Consensus 671 ~~~~~-~~l~~il~~~ 685 (946)
+..+. ..+..++..+
T Consensus 1492 g~~F~~~~W~~i~~~~ 1507 (1780)
T PLN03076 1492 GHLFSDEKWLEVVLSL 1507 (1780)
T ss_pred hccCCHHHHHHHHHHH
Confidence 77653 3344444433
No 197
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=42.13 E-value=5.1e+02 Score=28.56 Aligned_cols=222 Identities=14% Similarity=0.212 Sum_probs=113.2
Q ss_pred cCChhHHHHHHHHHHHHHhhcCC-----------CCchhhHHHHHHhcchh-hHHHHHHHHHHHHHhcccCCCcCcchHH
Q 002257 12 QVPPLLRVQLGECLKTIIHADYP-----------EQWPHLLDWVKHNLQDQ-QVYGALFVLRILSRKYEFKSDEERTPVY 79 (946)
Q Consensus 12 ~~~~~ir~ql~~~is~Ia~~D~P-----------~~Wp~Ll~~l~~~l~s~-~~~~~L~~L~~i~k~~~~~~~~~~~~l~ 79 (946)
.-+--.|+.++.+.+.+.++... .+||+++..|+....+. ....+=..|++.+|. +.+.
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~---------e~l~ 157 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH---------ESLA 157 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS---------HHHH
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh---------HHHH
Confidence 34555788888888888887543 35677777777777655 222222233554442 1111
Q ss_pred H-HHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhh--hh-hhhcCChhhHHHHHHHHHHHhcCCCCCCCC
Q 002257 80 R-IVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL--EI-PKQLLDPNVFNAWMILFLNVLERPVPSEGE 155 (946)
Q Consensus 80 ~-i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~--~l-p~~~~~~~~l~~w~~~~~~il~~~~~~~~~ 155 (946)
. ++. -|.+..+|.- ++. .+.++..-+..+|+.+... .+ .+++ ..+.+.++..+..+++...
T Consensus 158 ~~iL~--~~~f~~ff~~-~~~-----~~Fdiasdaf~t~~~llt~hk~~~a~fl--~~n~d~ff~~~~~Ll~s~N----- 222 (335)
T PF08569_consen 158 KIILY--SECFWKFFKY-VQL-----PNFDIASDAFSTFKELLTRHKKLVAEFL--SNNYDRFFQKYNKLLESSN----- 222 (335)
T ss_dssp HHHHT--SGGGGGHHHH-TTS-----SSHHHHHHHHHHHHHHHHSSHHHHHHHH--HHTHHHHHHHHHHHCT-SS-----
T ss_pred HHHhC--cHHHHHHHHH-hcC-----CccHhHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHHHHccCCC-----
Confidence 1 111 1223333332 222 2566677777777765332 12 2455 4688888888888876521
Q ss_pred CCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHH
Q 002257 156 PADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLI 235 (946)
Q Consensus 156 ~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~ 235 (946)
.=.|++.++.|..+... +....+...|.. .|.-+..+..++.. .+..+...+
T Consensus 223 ------------YvtkrqslkLL~ellld--------r~n~~vm~~yi~--~~~nLkl~M~lL~d------~sk~Iq~eA 274 (335)
T PF08569_consen 223 ------------YVTKRQSLKLLGELLLD--------RSNFNVMTRYIS--SPENLKLMMNLLRD------KSKNIQFEA 274 (335)
T ss_dssp ------------HHHHHHHHHHHHHHHHS--------GGGHHHHHHHTT---HHHHHHHHHHTT-------S-HHHHHHH
T ss_pred ------------eEeehhhHHHHHHHHHc--------hhHHHHHHHHHC--CHHHHHHHHHHhcC------cchhhhHHH
Confidence 45778899999988763 122222222222 25566666666643 345677777
Q ss_pred HHHHHhhccCch----hhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHh
Q 002257 236 LQYLSNSISKNS----MYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRK 288 (946)
Q Consensus 236 l~fl~~~~~~~~----~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~ 288 (946)
+..+.-.+-++. ..+++..+=..++..+ +.+.....+.+.|.++ .+|+-+
T Consensus 275 FhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl--~~f~~~~~~D~qf~~E-K~~li~ 328 (335)
T PF08569_consen 275 FHVFKVFVANPNKPPPIVDILIKNREKLLRFL--KDFHTDRTDDEQFEDE-KAYLIK 328 (335)
T ss_dssp HHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH--HTTTTT--S-CHHHHH-HHHHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH--HhCCCCCCccccHHHH-HHHHHH
Confidence 777776655443 2233444545555532 4444444244555543 344433
No 198
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=41.75 E-value=8.1e+02 Score=30.79 Aligned_cols=94 Identities=11% Similarity=0.294 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhc
Q 002257 299 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 378 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v 378 (946)
+|.-|.-.+..+|-.- +......++.+.+-|+-. .....|...+.++|-++.. |...++.++ ..+
T Consensus 947 vra~~vvTlakmcLah-~~LaKr~~P~lvkeLe~~-------~~~aiRnNiV~am~D~C~~------YTam~d~Yi-P~I 1011 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAH-DRLAKRLMPMLVKELEYN-------TAHAIRNNIVLAMGDICSS------YTAMTDRYI-PMI 1011 (1529)
T ss_pred HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhh-------hHHHHhcceeeeehhhHHH------HHHHHHHhh-HHH
Confidence 3444444444444333 223344565555555431 1334455556666665544 322333332 344
Q ss_pred ccCCCCCccchhHHHHHHHHhhhc---cccCC
Q 002257 379 FPEFSSPVGHLRAKAAWVAGQYAH---INFSD 407 (946)
Q Consensus 379 ~p~l~~~~~~lr~ra~~~l~~~~~---~~f~~ 407 (946)
--.|.++.+++|+.++..+++.-. ++|+.
T Consensus 1012 ~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G 1043 (1529)
T KOG0413|consen 1012 AASLCDPSVIVRRQTIILLARLLQFGIVKWNG 1043 (1529)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhhhhhcch
Confidence 456789999999999999998733 45543
No 199
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=41.41 E-value=6.1e+02 Score=30.25 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 002257 409 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 463 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ 463 (946)
..+..++.++++.=...+..+|+.|..+|..++... ....+-|.+....-.++.
T Consensus 278 k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~-~~~~l~~vlk~mY~afv~ 331 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKF-KSTCLDPVLKTMYLAFVR 331 (661)
T ss_pred HHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 366677777777666667889999999999888875 344555554444444443
No 200
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=41.09 E-value=74 Score=27.61 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---------hHHHHHHHHHHHHH
Q 002257 15 PLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---------QVYGALFVLRILSR 65 (946)
Q Consensus 15 ~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---------~~~~~L~~L~~i~k 65 (946)
-.+|...|.+++.|++. |-...|+|-|.+.+.+... ..+||+..|..+-.
T Consensus 20 ~~LRd~AA~lL~~I~~~-~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 20 WALRDFAASLLAQICRK-FSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred HHHHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 36999999999999975 7777888888777766432 56899999998854
No 201
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.07 E-value=3.4e+02 Score=27.53 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=55.2
Q ss_pred cccchHHHHHHHHHHHhhhhhhhHH---HHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHH
Q 002257 450 IRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVG 526 (946)
Q Consensus 450 l~p~l~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 526 (946)
+-+|++-...+|.. .+..+-. .-+-.++.+.++.+.|..++++-.|-..+.. .| .-..+.
T Consensus 112 y~~yLp~F~dGL~e----~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~t------rd-------~ev~~~ 174 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE----TDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVT------RD-------DEVICR 174 (262)
T ss_pred chHHHHHHhhhhhh----cCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhh------cc-------HHHHHH
Confidence 44666666666543 3333322 2233455566799999999988777644322 11 123557
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHh
Q 002257 527 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRM 559 (946)
Q Consensus 527 ~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~ 559 (946)
+|.+|..++.+.+-....+..+...++|++...
T Consensus 175 ~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 175 TLKVLQQLVVSVGCVGAALVPFYRQLLPVLNTF 207 (262)
T ss_pred HHHHHHHHHHhccccchhhhhHHHHhhhhhhhh
Confidence 788888888876533334455666677777654
No 202
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.75 E-value=93 Score=31.29 Aligned_cols=86 Identities=23% Similarity=0.299 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHH---HH---hhC
Q 002257 412 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETI---VD---KFG 485 (946)
Q Consensus 412 ~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~i---v~---~~~ 485 (946)
-.+++.....|.+.+-|-+..|-..+..++... .+.+.|.+|+++-.|=..+...+.|.+..+|..+ +. ..+
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~--g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAG--GEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc--ccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc
Confidence 346666777777778889999999999988884 5899999999999999999888887766555544 32 245
Q ss_pred CcccccHHHHHHHH
Q 002257 486 EEMAPYALGLCQNL 499 (946)
Q Consensus 486 ~~i~p~~~~l~~~L 499 (946)
..+.||.-++...+
T Consensus 191 ~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 191 AALVPFYRQLLPVL 204 (262)
T ss_pred hhhhhHHHHhhhhh
Confidence 78889988887654
No 203
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=40.67 E-value=5.6e+02 Score=31.95 Aligned_cols=169 Identities=16% Similarity=0.151 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh-hhHH---HHHHHHHHhh
Q 002257 409 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN-EDLV---FTLETIVDKF 484 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~-e~l~---~~L~~iv~~~ 484 (946)
+.+..+-+.+-..|.+++-.=|..|...+...+.... -...+....++..+++....--| -..+ .+|..|....
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 5666677777777888888899999999998888753 23444444455555544432111 1122 4556666777
Q ss_pred CCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccch
Q 002257 485 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG 564 (946)
Q Consensus 485 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~ 564 (946)
+....+|+..+.+.+...+.. .+...+..++.++..++.+.. .....+.+...+.+..
T Consensus 327 r~~~~~~~~~v~p~lld~lke-------------kk~~l~d~l~~~~d~~~ns~~---------l~~~~~~I~e~lk~kn 384 (815)
T KOG1820|consen 327 RPLFRKYAKNVFPSLLDRLKE-------------KKSELRDALLKALDAILNSTP---------LSKMSEAILEALKGKN 384 (815)
T ss_pred chhhHHHHHhhcchHHHHhhh-------------ccHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHhcCCC
Confidence 777888888877766643322 223333334444444433211 2356777777788777
Q ss_pred hhHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHh
Q 002257 565 QEVFEEVLEIVSYMTFFSPT---ISLEMWSLWPLMMEALA 601 (946)
Q Consensus 565 ~~~~~~~l~ll~~l~~~~~~---i~p~l~~l~~~l~~~~~ 601 (946)
.-+..++..++...+...++ -.+....+.|.++....
T Consensus 385 p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~ 424 (815)
T KOG1820|consen 385 PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHIN 424 (815)
T ss_pred hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhcc
Confidence 77888888888888876642 22345677888877764
No 204
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=39.13 E-value=18 Score=36.89 Aligned_cols=6 Identities=0% Similarity=0.573 Sum_probs=2.2
Q ss_pred HHHHhc
Q 002257 616 DNYISR 621 (946)
Q Consensus 616 ~~~i~~ 621 (946)
.+||..
T Consensus 104 EawvCH 109 (314)
T PF06524_consen 104 EAWVCH 109 (314)
T ss_pred hhheec
Confidence 333333
No 205
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.04 E-value=7.6e+02 Score=29.64 Aligned_cols=94 Identities=22% Similarity=0.282 Sum_probs=66.6
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccc------cCCh-hHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN------FSDQ-NNFRKA 414 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~------f~~~-~~~~~~ 414 (946)
+.+.|-+|+-++-+++++++=. .-+-+.....+.+.+-=+|..|..++.-|+... +.+. .....+
T Consensus 211 D~~Vrt~A~eglL~L~eg~kL~--------~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~a 282 (823)
T KOG2259|consen 211 DFRVRTHAVEGLLALSEGFKLS--------KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAA 282 (823)
T ss_pred CcchHHHHHHHHHhhccccccc--------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHH
Confidence 6788889999988888864311 112223333466788889999877766665521 1111 456688
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 415 LHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 415 ~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
+..+++.+.|-+..||+.|+.+|..|-..
T Consensus 283 F~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 283 FSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred HHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 89999999999999999999999987665
No 206
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.53 E-value=66 Score=34.95 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=66.7
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhc-cccCChhHHHHHHHHHHh
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-INFSDQNNFRKALHSVVS 420 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~-~~f~~~~~~~~~~~~l~~ 420 (946)
+.-.++=|-.++|.|+-.-...+.+ .+-++-+...++....++.+-+|..|-..++..+. ..++-+-.-.--+|.++.
T Consensus 221 d~dvqyycttaisnIaVd~~~Rk~L-aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~ 299 (550)
T KOG4224|consen 221 DLDVQYYCTTAISNIAVDRRARKIL-AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVE 299 (550)
T ss_pred ChhHHHHHHHHhhhhhhhHHHHHHH-HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHH
Confidence 5566777888888887653221111 12223334444445567899999999999998864 223222223345678888
Q ss_pred cCCCCCCchHHHHHHHHHHHHHhc
Q 002257 421 GLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 421 ~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
.|+++..|.-.....|++++.-++
T Consensus 300 Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 300 LLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHhCcchhHHHHHHHHHhhccccc
Confidence 899998888888888888876654
No 207
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.20 E-value=8.3e+02 Score=29.85 Aligned_cols=72 Identities=11% Similarity=0.228 Sum_probs=52.5
Q ss_pred CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 002257 384 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 461 (946)
Q Consensus 384 ~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~L 461 (946)
++-+.+|.||+.++--.-. ..|+.-..++..+++.|.|++..+...|..-|..+... ++.++-.+..-++++
T Consensus 315 D~L~~vk~raL~ti~~lL~---~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~---HPnMK~Vvi~EIer~ 386 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLT---NKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK---HPNMKIVVIDEIERL 386 (988)
T ss_pred ccHHHHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh---CCcceeehHHHHHHH
Confidence 5778899999998844422 24577788999999999999999999999999888775 344444433333333
No 208
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=37.93 E-value=5.8e+02 Score=30.84 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHhh-
Q 002257 525 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM-WSLWPLMMEALAD- 602 (946)
Q Consensus 525 ~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l-~~l~~~l~~~~~~- 602 (946)
..+++-+..|.+-+.. ..+.+.++|++..+++....-.-+.+++++..+.+... + +.+ ..++|.+.+..-.
T Consensus 368 l~i~e~mdlL~~Kt~~-----e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~-~~vk~~ilP~l~~l~~~t 440 (700)
T KOG2137|consen 368 LFILENMDLLKEKTPP-----EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-V-PFVKQAILPRLKNLAFKT 440 (700)
T ss_pred hhHHhhHHHHHhhCCh-----HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-H-HHHHHHHHHHhhcchhcc
Confidence 3566777677776532 34667899999999988877778889999998886543 1 223 2677777766321
Q ss_pred hHhhhHhhhHHHHHHHH
Q 002257 603 WAIDFFPNILVPLDNYI 619 (946)
Q Consensus 603 ~~~~~l~~~~~~L~~~i 619 (946)
.....-.+++.|+..++
T Consensus 441 t~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 441 TNLYVKVNVLPCLAGLI 457 (700)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 22333445566666555
No 209
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=37.50 E-value=1.1e+03 Score=30.89 Aligned_cols=122 Identities=20% Similarity=0.328 Sum_probs=67.1
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHh----cc---cCCCC--CccchhHHHHHHHHhhhccccCChhHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH----VF---PEFSS--PVGHLRAKAAWVAGQYAHINFSDQNNFR 412 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~----v~---p~l~~--~~~~lr~ra~~~l~~~~~~~f~~~~~~~ 412 (946)
+|-.|+|+-.++--+...-.+.-.+ ..++..+... .+ ..+-+ --.-+|..+.|.++.+-... ++....
T Consensus 90 ~we~rhg~~i~lrei~~~h~~~~~~-~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~--~~s~~~ 166 (1549)
T KOG0392|consen 90 QWEIRHGAAIALREILKTHGDSLSY-ELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHM--DESLIK 166 (1549)
T ss_pred hhhhhcCcchhhhhHHHHhcchhhH-HHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhh--hhHhhH
Confidence 7999998888776665442211111 1222221111 11 11111 12358899999999886633 556677
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhh
Q 002257 413 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 468 (946)
Q Consensus 413 ~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~ 468 (946)
.+++.+.+.+..+.--+|-....+++.++... .+.+...++.++.....-++..
T Consensus 167 ~~~~il~q~~~q~~w~ir~Ggll~iky~~air--~d~l~~~~~~vl~~~i~~L~ds 220 (1549)
T KOG0392|consen 167 ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIR--QDLLFQLLNLVLDFVIEGLEDS 220 (1549)
T ss_pred HHHHHHHHHHcCcchhheechHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhc
Confidence 78888888776666667777777777766532 2333333444444444444443
No 210
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=36.65 E-value=1.4e+02 Score=33.33 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHH-----H-hcCCCCCHHHHHHHHHHHHHH
Q 002257 527 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM-----T-FFSPTISLEMWSLWPLMMEAL 600 (946)
Q Consensus 527 ~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l-----~-~~~~~i~p~l~~l~~~l~~~~ 600 (946)
.+.-|..|++++ .|.-++.++..+...|..|++.+..-..|.++.+|+.= + ++...+- .-+||.|++..
T Consensus 319 FL~ElEEILe~i--ep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~il---PiiFpaLyr~s 393 (457)
T KOG2085|consen 319 FLNELEEILEVI--EPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVIL---PIVFPALYRNS 393 (457)
T ss_pred eHhhHHHHHHhc--CHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceee---ehhhHHHHHHH
Confidence 455667888886 45567788777888888899888778889999999752 2 2223333 34577777775
Q ss_pred hh-hHhhhHhhhHHHHHHHHhcCcc
Q 002257 601 AD-WAIDFFPNILVPLDNYISRGTA 624 (946)
Q Consensus 601 ~~-~~~~~l~~~~~~L~~~i~~~~~ 624 (946)
.+ |......-...+++.|+..++.
T Consensus 394 k~hWN~~i~~l~~nvlk~f~emd~~ 418 (457)
T KOG2085|consen 394 KSHWNQAIHNLILNVLKTFMEMDPK 418 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 43 6555555555666666665544
No 211
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.20 E-value=7.3e+02 Score=28.63 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=67.8
Q ss_pred ccCCCCCccchhHHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 379 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 379 ~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~---~~~~~~~~~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
..-..+|+..+|+-||..+|..++ +.+. .+-..++.+++..|-| .+..|..+|..+|....+.. ....+.+|+
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as--~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-~~~~l~~~~ 340 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTAS--GAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-SNDDLESYL 340 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhc--cCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-hhcchhhhc
Confidence 334557888999999999999866 2232 4667788888888865 46889999999999998876 456788998
Q ss_pred HHHHHHHHHHHhhhh
Q 002257 455 PQLLDEFFKLMNEVE 469 (946)
Q Consensus 455 ~~il~~Ll~ll~~~~ 469 (946)
-++--++-.+...-+
T Consensus 341 l~ialrlR~l~~se~ 355 (533)
T KOG2032|consen 341 LNIALRLRTLFDSED 355 (533)
T ss_pred hhHHHHHHHHHHhcC
Confidence 888888877775433
No 212
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=36.16 E-value=2e+02 Score=34.44 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=52.2
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCc-----chHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEP-----YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALH 416 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~-----~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~ 416 (946)
....+.+|+.++|++........+ ....+.+++...+-...+....--+--++..+|.... + ..+.
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----~----~~i~ 480 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----P----SSIK 480 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----h----hHHH
Confidence 568999999999999986442221 1223444444433322222222233445556665542 1 2223
Q ss_pred HHHhcCC-CC--CCchHHHHHHHHHHHHHh
Q 002257 417 SVVSGLR-DP--ELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 417 ~l~~~L~-d~--~~~V~~~Aa~Al~~~~~~ 443 (946)
.+...+. +. +..+|+.|+.||+++...
T Consensus 481 ~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 481 VLEPYLEGAEPLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 3333333 43 445999999999988765
No 213
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=35.88 E-value=7.8e+02 Score=31.46 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHH
Q 002257 633 DYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR---AEKSYLKCLLVQVIADAL 709 (946)
Q Consensus 633 ~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~---~~~~~~~~~~l~v~~~~~ 709 (946)
+.+..+++.+.+++.+....+ .+..+++.+-..+.+. +|++.++.-+.. ...-.+...++.++..++
T Consensus 545 ~~v~~ii~Ll~~l~~~~~~~~----~~~~iL~~~S~~l~~~------DIisvI~~ile~~L~~~~v~ll~scl~fL~aL~ 614 (931)
T PF10487_consen 545 ERVAEIIDLLASLLSSDNSIE----DSKEILEEASAYLDHS------DIISVIFDILERSLQSRNVELLTSCLRFLTALL 614 (931)
T ss_pred HHHHHHHHHHHHHHccCcchh----HHHHHHHHHhhccccC------cHHHHHHHHHHHHcccCChHHHHHHHHHHHHHh
Confidence 556777777888884332111 2445555554444332 455555544433 334456677777777777
Q ss_pred hhCHHHHHHHHHhcCch-----HHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhcc
Q 002257 710 YYNSSLTLSILHKLGVA-----TEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL 768 (946)
Q Consensus 710 ~~~~~~~l~~L~~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~ 768 (946)
-..|..+..+|.+.+.+ .++....+..++ ...|.|+-=++++-|.+-|..
T Consensus 615 p~~p~rVW~~L~rS~LL~~~g~~G~~s~ilgs~E---------~~~G~Y~ftls~lkL~~~Lv~ 669 (931)
T PF10487_consen 615 PIFPGRVWSYLSRSSLLGSDGKGGLASVILGSIE---------MVSGRYDFTLSLLKLFSALVD 669 (931)
T ss_pred ccChHHHHHHHhhCcCcccCCccchHHHhhhhhh---------ccCCcchHHHHHHHHHHHHHH
Confidence 78899999999775432 457777776777 888999998888888877753
No 214
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=35.29 E-value=9.8e+02 Score=29.85 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh
Q 002257 409 NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d~-~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
-.+.+++-.+++.+.++ +..-+.+-..++.+++.. .++.+.|..+.+++.|.++-..
T Consensus 529 ~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~--~~~~i~pl~~~il~~L~~lv~~ 586 (947)
T COG5657 529 GLLENLILLVLSLMASPSSLEEREFLLQLISRIIII--DPELIAPLGSEILQLLDNLVEI 586 (947)
T ss_pred ccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHh--CHHhhhhhHHHHHHHHHHHHHH
Confidence 45667777788888765 455788999999999988 5788999888888888877754
No 215
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=35.17 E-value=5.2e+02 Score=28.60 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhcCChhHH-HHHHhhHHHHHHHhccc----------chhhHHHHHHHHHHHHHhcC
Q 002257 526 GCLRAISTILESVSRLPHLF-VQIEPTLLPIMRRMLTT----------DGQEVFEEVLEIVSYMTFFS 582 (946)
Q Consensus 526 ~~l~ti~~ll~~~~~~~~~~-~~l~~~l~p~i~~~l~~----------~~~~~~~~~l~ll~~l~~~~ 582 (946)
..+..+-.+++++-.+|.+. ..+...++|.+.+|+-. +...+.+++-.++..+...-
T Consensus 232 ~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f 299 (343)
T cd08050 232 ALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKF 299 (343)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHc
Confidence 34555566666664455432 22335588888887732 22367788888888887643
No 216
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.06 E-value=33 Score=31.27 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=42.8
Q ss_pred CCccchhHHHHHHHHhhhccccCCh--hHH--HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 384 SPVGHLRAKAAWVAGQYAHINFSDQ--NNF--RKALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 384 ~~~~~lr~ra~~~l~~~~~~~f~~~--~~~--~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
+..|...+-||.=+|+|.... |. ... ..+-..++++|.+++.-||..|..|++.++-.
T Consensus 55 s~d~~~laVac~Dig~~vr~~--p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 55 SDDPTTLAVACHDIGEFVRHY--PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeehhhcchHHHHHHC--hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 457788888999999997632 22 111 23457788999999999999999999988754
No 217
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=34.63 E-value=1.4e+02 Score=35.82 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHH
Q 002257 319 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 398 (946)
Q Consensus 319 l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 398 (946)
...+.+++.+.|.+.... .+-..+-.++.+||.++..- ....+..++. .-....+++|..|+|.+.
T Consensus 440 ~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~~---------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr 505 (574)
T smart00638 440 LEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHPS---------SIKVLEPYLE-GAEPLSTFIRLAAILALR 505 (574)
T ss_pred HHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCChh---------HHHHHHHhcC-CCCCCCHHHHHHHHHHHH
Confidence 455666666666543211 13345777888988776541 1122334433 112457899999999999
Q ss_pred hhhccccCChhHHHHHHHHHHhcCCC--CCCchHHHHHHHHH
Q 002257 399 QYAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALR 438 (946)
Q Consensus 399 ~~~~~~f~~~~~~~~~~~~l~~~L~d--~~~~V~~~Aa~Al~ 438 (946)
+.+... +.. +-+.++....+ .+.-||+.|+.+|-
T Consensus 506 ~~a~~~--p~~----v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 506 NLAKRD--PRK----VQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHhC--chH----HHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 887522 222 23333333333 34559988877654
No 218
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=34.63 E-value=2.8e+02 Score=33.60 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=59.7
Q ss_pred CCCCccchhHHHHHHHHhhhccccCChhHHHH-----HHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc-ccccc-cch
Q 002257 382 FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRK-----ALHSVVSGLRDPELPVRVDSVFALRSFVEACRD-LNEIR-PIL 454 (946)
Q Consensus 382 l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~-----~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~-~~~l~-p~l 454 (946)
+.++.|.++++|.-++...+ |.+.+...+ -++-++..|.....-|+..||.||++++..... .+.+. +..
T Consensus 242 L~~q~~~~qsnaaaylQHlc---fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 242 LMSQDPSVQSNAAAYLQHLC---FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred HhccChhhhHHHHHHHHHHH---hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 45688999999988887664 333333322 245667777777888999999999999987642 22222 221
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 002257 455 PQLLDEFFKLMNEVENEDLVFTLETIVDKF 484 (946)
Q Consensus 455 ~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~ 484 (946)
+. +-.++.++.++..+++...+..+.=++
T Consensus 319 ~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNL 347 (717)
T KOG1048|consen 319 NG-VPTLVRLLRHTQDDEVRELITGILWNL 347 (717)
T ss_pred CC-hHHHHHHHHhhcchHHHHHHHHHHhcc
Confidence 11 233445555555555555544443333
No 219
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=34.18 E-value=1.6e+02 Score=29.78 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHH-HHHHHHHHhhhhcCCcchHHHHHHHHHh
Q 002257 299 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGA-LLAIGALCDKLKQTEPYKSELERMLVQH 377 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaa-l~alg~ia~~l~~~~~~~~~l~~~l~~~ 377 (946)
.|..|..++....... -...+..+...+.. ..||-.-|.. -.++|.+...- +.....+..|
T Consensus 67 ~~~la~~il~~~~~~~----~~~~~~~~~~~~~~-------~~~W~~~D~~~~~~~~~~~~~~---~~~~~~~~~W---- 128 (213)
T PF08713_consen 67 ERYLALLILDKRRKKL----TEEDLELLEKWLPD-------IDNWATCDSLCSKLLGPLLKKH---PEALELLEKW---- 128 (213)
T ss_dssp HHHHHHHHHHHCGGG------HHHHHHHHHCCCC-------CCCHHHHHHHTHHHHHHHHHHH---GGHHHHHHHH----
T ss_pred HHHHHHHHhHHHhhhh----hHHHHHHHHHHhcc-------CCcchhhhHHHHHHHHHHHHhh---HHHHHHHHHH----
Confidence 3666666654432222 12234455555542 2389888887 55566653321 1122233333
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 455 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~ 455 (946)
..|++++.|+.++.++-.+.. ......++..+...+.|++.-||...+.+|+.+... .++.+.+++.
T Consensus 129 ----~~s~~~w~rR~~~v~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~--~~~~v~~~l~ 195 (213)
T PF08713_consen 129 ----AKSDNEWVRRAAIVMLLRYIR-----KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK--DPDEVLEFLQ 195 (213)
T ss_dssp ----HHCSSHHHHHHHHHCTTTHGG-----GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT---HHHHHHHHH
T ss_pred ----HhCCcHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--CHHHHHHHHH
Confidence 357899999888777644432 256788889899999999999999999999988765 3444444443
No 220
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=33.81 E-value=8.7e+02 Score=28.80 Aligned_cols=266 Identities=12% Similarity=0.133 Sum_probs=124.3
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCccc
Q 002257 410 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMA 489 (946)
Q Consensus 410 ~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~ 489 (946)
....-|..++..-.. +..++.-|+.=|.+|+...+ ......+..++.|..+-+...-..++..+...+++.
T Consensus 20 ~~~~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP------~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-- 90 (556)
T PF05918_consen 20 QHEEDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFP------DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-- 90 (556)
T ss_dssp GGHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-G------GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---
T ss_pred cCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--
Confidence 345577777777654 45678888888888887742 345678888888886655554556777766555542
Q ss_pred ccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcc--cchhhH
Q 002257 490 PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLT--TDGQEV 567 (946)
Q Consensus 490 p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~--~~~~~~ 567 (946)
++.+.+++.++.+++.+ +++ .. ...+=+++.+++.. +|. ..+-.++.++.. +.....
T Consensus 91 ---~~~v~kvaDvL~QlL~t--dd~-----~E--~~~v~~sL~~ll~~---d~k------~tL~~lf~~i~~~~~~de~~ 149 (556)
T PF05918_consen 91 ---PEHVSKVADVLVQLLQT--DDP-----VE--LDAVKNSLMSLLKQ---DPK------GTLTGLFSQIESSKSGDEQV 149 (556)
T ss_dssp ----T-HHHHHHHHHHHTT-----H-----HH--HHHHHHHHHHHHHH----HH------HHHHHHHHHHH---HS-HHH
T ss_pred ---HHHHhHHHHHHHHHHhc--ccH-----HH--HHHHHHHHHHHHhc---CcH------HHHHHHHHHHHhcccCchHH
Confidence 12333333444455542 111 11 11233444444443 331 123344444442 222345
Q ss_pred HHHHHHHHHHHHhcCC--CCC--HHHH-HHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHH
Q 002257 568 FEEVLEIVSYMTFFSP--TIS--LEMW-SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMV 642 (946)
Q Consensus 568 ~~~~l~ll~~l~~~~~--~i~--p~l~-~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~ 642 (946)
.+.++..+..-+...+ -++ .++. .+...+-+.+.+-..+-+.-++.+|.+.=.++.. +.+...+.+++++
T Consensus 150 Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~-----~t~~g~qeLv~ii 224 (556)
T PF05918_consen 150 RERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGK-----QTIEGRQELVDII 224 (556)
T ss_dssp HHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---G-----SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcccccc-----CChHHHHHHHHHH
Confidence 6778887776665432 334 3455 4444555555432234444555555554332211 1124566677776
Q ss_pred HHHHc-CCCCCCcccCchhhHHHHHHHHccc-----CchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 002257 643 SSIMA-DKNLEDGDIEPAPKLIEVVFQNCKG-----QVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYY 711 (946)
Q Consensus 643 ~~ll~-~~~~~~~~~~~a~~ll~~il~~~~~-----~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~ 711 (946)
..... +..++.++....-+++..+-..+|- +...++..+...++..+.. -....+..++-+++-+.-+
T Consensus 225 ~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~-l~e~~kl~lLk~lAE~s~~ 298 (556)
T PF05918_consen 225 EEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSD-LPEDRKLDLLKLLAELSPF 298 (556)
T ss_dssp HHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT------HHHHHHHHHHHHHTT
T ss_pred HHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhh-CChHHHHHHHHHHHHHcCC
Confidence 54331 2223444344455666666666652 2234444444444443333 1223445566666655543
No 221
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=32.78 E-value=5.1e+02 Score=31.29 Aligned_cols=113 Identities=9% Similarity=0.131 Sum_probs=72.4
Q ss_pred HHHHhcC-cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC----
Q 002257 309 ELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS---- 383 (946)
Q Consensus 309 ~l~~~~~-~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~---- 383 (946)
.|.++.+ +.+...+++++...+.. .+....+.++..+..+++.+. .+++.+.|+|.+.
T Consensus 376 lL~~Kt~~e~~~~~IlplL~~S~~~--------~~~~iQ~~~L~~lptv~e~iD---------~~~vk~~ilP~l~~l~~ 438 (700)
T KOG2137|consen 376 LLKEKTPPEEVKEKILPLLYRSLED--------SDVQIQELALQILPTVAESID---------VPFVKQAILPRLKNLAF 438 (700)
T ss_pred HHHhhCChHHHHHHHHHHHHHHhcC--------cchhhHHHHHHhhhHHHHhcc---------HHHHHHHHHHHhhcchh
Confidence 3455543 46777888877776654 267899999999999998863 1445566666543
Q ss_pred -CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 002257 384 -SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 440 (946)
Q Consensus 384 -~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~ 440 (946)
.....+|-.++-|++.+.+ ..+.-.....+..+..|++..++.+...-....+++
T Consensus 439 ~tt~~~vkvn~L~c~~~l~q--~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 439 KTTNLYVKVNVLPCLAGLIQ--RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred cccchHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4678899999999999874 223334445555666777654555444333333333
No 222
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=32.74 E-value=6.2e+02 Score=26.80 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=42.7
Q ss_pred hHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcC
Q 002257 551 TLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRG 622 (946)
Q Consensus 551 ~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~ 622 (946)
.++-.+...|.+....+-..+++++..++.....=.|.-.+++..+.+.++ .+|-.+.+.+|++-+...
T Consensus 188 ~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~---t~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 188 QILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQ---TDLWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhC---CccHHHHHHHHHHHHhhc
Confidence 344445555666666777778888888886642112333355666666665 366677777777776654
No 223
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.43 E-value=4.8e+02 Score=31.47 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=55.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+-+.|.-++.++..+.+...+.. +++-+-+...+.--+.+..|.+|..|..++++|-+.. .+++ -.+.+.+...
T Consensus 98 dk~VRfrvlqila~l~d~~~eid---d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~-~dee--~~v~n~l~~l 171 (892)
T KOG2025|consen 98 DKKVRFRVLQILALLSDENAEID---DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP-KDEE--CPVVNLLKDL 171 (892)
T ss_pred chhHHHHHHHHHHHHhccccccC---HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC-CCCc--ccHHHHHHHH
Confidence 44667778888888877433332 2333334444444566889999999999999997522 1221 2344445555
Q ss_pred CC-CCCCchHHHHHHHH
Q 002257 422 LR-DPELPVRVDSVFAL 437 (946)
Q Consensus 422 L~-d~~~~V~~~Aa~Al 437 (946)
++ |++.-||-.|...|
T Consensus 172 iqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 172 IQNDPSDEVRRAALSNI 188 (892)
T ss_pred HhcCCcHHHHHHHHHhh
Confidence 54 67777887665543
No 224
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=31.38 E-value=4.9e+02 Score=25.20 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=31.6
Q ss_pred CChhHHHHHH-hhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC
Q 002257 540 RLPHLFVQIE-PTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 582 (946)
Q Consensus 540 ~~~~~~~~l~-~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~ 582 (946)
++|..+..+. +.-+|-+...|+....+.--+++.|+.++..++
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 3566666654 445677777777777788889999999998765
No 225
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.04 E-value=4.6e+02 Score=30.66 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=59.5
Q ss_pred CCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchHHHHHH
Q 002257 382 FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDE 460 (946)
Q Consensus 382 l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~ 460 (946)
.++.+-=+|+.|...+|-.+ |+++..+ ...++.|.+ .+.-||...|.||.-+|.....+. .-.+++.
T Consensus 561 vsD~nDDVrRAAViAlGfvc---~~D~~~l----v~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-----a~diL~~ 628 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVC---CDDRDLL----VGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-----ATDILEA 628 (926)
T ss_pred cccCchHHHHHHHHheeeeE---ecCcchh----hHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-----HHHHHHH
Confidence 45566668877777777654 4455444 344455553 466799989999988887753111 1123333
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHH
Q 002257 461 FFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 500 (946)
Q Consensus 461 Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~ 500 (946)
|..=-+..--...|.++..|.....+++.|-...+..++-
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~ 668 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFN 668 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHH
Confidence 2211111111223444555556667778887776666554
No 226
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=30.31 E-value=3.4e+02 Score=28.27 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhhccCchhhhhc-hhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHH
Q 002257 230 RVTNLILQYLSNSISKNSMYNLL-QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 308 (946)
Q Consensus 230 ~~~~~~l~fl~~~~~~~~~~~~l-~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~ 308 (946)
.-++.++.++..++++++++..| +.++ ...++|+|..+..+ -|.|| .|-+|..++.
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~i----PlylYpfL~Tt~~~------r~fEy-------------LRLtsLGVIg 150 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHI----PLYLYPFLNTTSKS------RPFEY-------------LRLTSLGVIG 150 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccC----hhhhHHhhhccccC------CchHH-------------HhHHHHHHHH
Confidence 45788899999999999887765 3343 44566888766552 34444 5677788888
Q ss_pred HHHHhcCcccHH-----HHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHH
Q 002257 309 ELVRKRGKENLQ-----KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGAL 356 (946)
Q Consensus 309 ~l~~~~~~~~l~-----~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~i 356 (946)
.|++.-.+++.. .+.++|...+... .-..|-.|.++++-|
T Consensus 151 aLvk~dd~eVi~fLl~TeIVPlCLrime~G--------SelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 151 ALVKNDDQEVIRFLLTTEIVPLCLRIMESG--------SELSKTVATFILQKI 195 (293)
T ss_pred HHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--------cHHHHHHHHHHHHHH
Confidence 888766554433 3344554544432 224455566665554
No 227
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=28.46 E-value=83 Score=22.21 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=21.1
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHHHh
Q 002257 5 HILVFVAQVPPLLRVQLGECLKTIIH 30 (946)
Q Consensus 5 ~Ll~~l~~~~~~ir~ql~~~is~Ia~ 30 (946)
.|++.|.+++..++.+.+-+++.|++
T Consensus 16 ~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 16 PLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35566678899999999999998874
No 228
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.25 E-value=1.4e+03 Score=29.39 Aligned_cols=95 Identities=14% Similarity=0.129 Sum_probs=63.4
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL 447 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~ 447 (946)
.+..++....+.-..+-.|-+|+.+..-+|.|.... |.-.+. .++.-+==.|.|.+--||.....||..+.+..+..
T Consensus 283 mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~y--P~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~ 360 (1048)
T KOG2011|consen 283 MINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSY--PEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDK 360 (1048)
T ss_pred HHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhc--cHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccc
Confidence 344445555555566788999999999999997632 322222 23333333467889999999999999999985555
Q ss_pred cccccchHHHHHHHHHHH
Q 002257 448 NEIRPILPQLLDEFFKLM 465 (946)
Q Consensus 448 ~~l~p~l~~il~~Ll~ll 465 (946)
..++-+....=.+++.+.
T Consensus 361 ~~L~lFtsRFK~RIVeMa 378 (1048)
T KOG2011|consen 361 DKLELFTSRFKDRIVEMA 378 (1048)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 555555555555555555
No 229
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.54 E-value=2.6e+02 Score=35.20 Aligned_cols=96 Identities=21% Similarity=0.280 Sum_probs=64.5
Q ss_pred chhHhHHHHHHHHHHhhhhc--CCcchHHHHHHHHHhcccCCCC-CccchhHHHHHHHHhh-hcc---ccCChhHHHHHH
Q 002257 343 YRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQY-AHI---NFSDQNNFRKAL 415 (946)
Q Consensus 343 ~~~keaal~alg~ia~~l~~--~~~~~~~l~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~-~~~---~f~~~~~~~~~~ 415 (946)
...|--|-+.++.+..+..- ..-+..++ ....+..+++ +.|+||-=+|.|+|+. .++ .|. -......
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~l----i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~Ah 644 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNL----IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS--GRRDNAH 644 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccH----HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc--cccccHH
Confidence 36677777777887776431 11111222 2344445666 5899999999999995 432 121 2344566
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 416 HSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 416 ~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
+-++..|.|+.+-||..|.-||.+|+...
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 77778888988889999999999999973
No 230
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.54 E-value=2.2e+03 Score=31.65 Aligned_cols=250 Identities=16% Similarity=0.171 Sum_probs=121.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcC--CcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhh------hccccCCh--hHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY------AHINFSDQ--NNF 411 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~--~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~------~~~~f~~~--~~~ 411 (946)
.|..|.|...+++++.+..... -++..++-.-+. +++-.+.+..+-...+-+..+..+ .+..+... ...
T Consensus 1046 ~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~-fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~ 1124 (3550)
T KOG0889|consen 1046 TWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALF-FVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSA 1124 (3550)
T ss_pred hHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHH-HhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 7999999999999998876521 001111111111 222233333332222233222221 11121111 345
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHh----hhhh-----hhHHHHHHHHH-
Q 002257 412 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN----EVEN-----EDLVFTLETIV- 481 (946)
Q Consensus 412 ~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~----~~~~-----e~l~~~L~~iv- 481 (946)
..++..+...|.+++.+||..+..+|..+.+... +-+..++..+..++- ..+. ...+..++.+.
T Consensus 1125 ~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~------~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~f 1198 (3550)
T KOG0889|consen 1125 MNVFSPLVLELFNPNSDVREFSQKLLRLISELSG------KSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITF 1198 (3550)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHH
Confidence 5677777777888888999999999999988742 223334444433331 0111 12233333332
Q ss_pred -HhhCCcccccHHHHHHHHHHHHHHHHhhc-------cC--CCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhh
Q 002257 482 -DKFGEEMAPYALGLCQNLAAAFWRCMNTA-------EA--DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPT 551 (946)
Q Consensus 482 -~~~~~~i~p~~~~l~~~L~~~~~~~~~~~-------~~--d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~ 551 (946)
...++..--+..++... ...+..+.... .+ +......-...+..|++++.+......-.......+.+.
T Consensus 1199 C~~l~p~~f~~~~~l~~l-~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~k 1277 (3550)
T KOG0889|consen 1199 CLSLGPCLFDFTEELYRL-KRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREK 1277 (3550)
T ss_pred HHHcCCcccCchHHHHHH-HHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhH
Confidence 22344444444444321 11111111000 00 110011111235567777776666654322223444455
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHH-HHH-HHHHHH
Q 002257 552 LLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW-SLW-PLMMEA 599 (946)
Q Consensus 552 l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~-~l~-~~l~~~ 599 (946)
++-++...+..+..++.+-+...+...+...+.++-+.| ... |.+++.
T Consensus 1278 ii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1278 IIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 666666667777778888777777776655455665655 333 444443
No 231
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.28 E-value=1.2e+03 Score=28.44 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=72.7
Q ss_pred hhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 002257 344 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 423 (946)
Q Consensus 344 ~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~ 423 (946)
...=||++|+|.|-.+-.+ ..-++|.+.+. ..+++.+|--+|.=+|--+--. ....+|+.+-..|.
T Consensus 394 y~EGGalyAlGLIhA~hG~------~~~~yL~~~Lk---~~~~e~v~hG~cLGlGLa~mGS-----a~~eiYe~lKevLy 459 (929)
T KOG2062|consen 394 YKEGGALYALGLIHANHGR------GITDYLLQQLK---TAENEVVRHGACLGLGLAGMGS-----ANEEIYEKLKEVLY 459 (929)
T ss_pred ccccchhhhhhccccCcCc------cHHHHHHHHHH---hccchhhhhhhhhhccchhccc-----ccHHHHHHHHHHHh
Confidence 4455799999998665322 12233333322 1358899999999887664211 33467777777776
Q ss_pred CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHH
Q 002257 424 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLET 479 (946)
Q Consensus 424 d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~ 479 (946)
..+.+--..|..++.-+.-.. .-+..++.++...++++.|.+.+-|..
T Consensus 460 ~D~AvsGEAAgi~MGl~mlGt--------~~~eaiedm~~Ya~ETQHeki~RGl~v 507 (929)
T KOG2062|consen 460 NDSAVSGEAAGIAMGLLMLGT--------ANQEAIEDMLTYAQETQHEKIIRGLAV 507 (929)
T ss_pred ccchhhhhHHHHhhhhHhhCc--------CcHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 444555567778877665442 234577888888888888887766653
No 232
>PRK02922 glycogen synthesis protein GlgS; Provisional
Probab=26.99 E-value=3.1e+02 Score=21.96 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=40.7
Q ss_pred CCCCchHHHHHHHHHHHhhcChH-HHHHHHccCCHHHHHHHHHHHHHHHHhHHH
Q 002257 879 IDEVDPFVFFVDTIKVMQASDPL-RFQNLTQTLEFQYQALANGVAQHADQRRVE 931 (946)
Q Consensus 879 l~~~d~~~~~~~~l~~~~~~~~~-~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~ 931 (946)
++...-+.|++.++.-+...+.. -..++.++++++++..+.+-+.+...+..+
T Consensus 6 ~ys~~~~DFlAsS~A~Me~Qgr~Idvd~V~gnmsee~r~~F~eRla~Yr~~~~~ 59 (67)
T PRK02922 6 LYSLNNFDFLARSFARMHAEGRPVDIQAVTGNMDEEHRTWFCARYAWYCQQMMQ 59 (67)
T ss_pred cccccchhHHHHHHHHHHHcCCCccHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 33445677899999888766443 568899999999999999888877766544
No 233
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.64 E-value=8.3e+02 Score=26.29 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=45.2
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHH-HHHHHhcCcccccccCC---Cch
Q 002257 559 MLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVP-LDNYISRGTAHFLTCKE---PDY 634 (946)
Q Consensus 559 ~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~-L~~~i~~~~~~~l~~~~---~~~ 634 (946)
.++++.....+.|+..++.+--..+.+.. +.++.+...+.......-...+.+ .+-.+.+|.+.+-.... ...
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~---~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAK---EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 34455557788888888876543333332 444555555532211111122233 34445667665543211 134
Q ss_pred HHHHHHHHHHHHcCC
Q 002257 635 QQSLWSMVSSIMADK 649 (946)
Q Consensus 635 ~~~i~~i~~~ll~~~ 649 (946)
...+..++.+.+.+.
T Consensus 112 ~~~l~~~l~~~l~~~ 126 (298)
T PF12719_consen 112 SKSLLKILTKFLDSE 126 (298)
T ss_pred HhHHHHHHHHHHhcC
Confidence 566777777777544
No 234
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.81 E-value=4.2e+02 Score=25.96 Aligned_cols=100 Identities=13% Similarity=0.220 Sum_probs=57.0
Q ss_pred chhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHH-h
Q 002257 658 PAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQ-M 736 (946)
Q Consensus 658 ~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~-~ 736 (946)
.|+.++.+++..+...++ +..|+..+...|.+ ....+.....++.++...+|..+.+.|++ +.+ -|..-+. +
T Consensus 46 ~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~--l~~-~l~~~L~~k 118 (169)
T PF08623_consen 46 AAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQRLDS--LVE-PLRKTLSKK 118 (169)
T ss_dssp HHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCTT--THH-HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HHH-HHHHHhhcc
Confidence 466777777777766554 45556666666644 45566666677888888899999888774 333 3333332 2
Q ss_pred HHHHhhhccccccccchhhHHHHHHHHHHhc
Q 002257 737 LQQVKKNGLRVNFKREHDKKVCCLGLTSLLA 767 (946)
Q Consensus 737 ~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~ 767 (946)
.. .....+.+-+..|.+.+++-++.-|.
T Consensus 119 ~k---~~AvkQE~Ek~~E~~rs~lr~~~~l~ 146 (169)
T PF08623_consen 119 LK---ENAVKQEIEKQQELIRSVLRAVKALN 146 (169)
T ss_dssp -----TTS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred CC---CCcccccHHHHHHHHHHHHHHHHHHH
Confidence 21 11111244555666777777776663
No 235
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=25.77 E-value=37 Score=44.00 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=4.3
Q ss_pred CCCCCCchHH
Q 002257 877 SPIDEVDPFV 886 (946)
Q Consensus 877 ~pl~~~d~~~ 886 (946)
+-+|..|.|.
T Consensus 201 ~~~~~~d~f~ 210 (2849)
T PTZ00415 201 SEVDKTDCFK 210 (2849)
T ss_pred ccccccceee
Confidence 3444444443
No 236
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=25.69 E-value=1.1e+03 Score=29.53 Aligned_cols=138 Identities=10% Similarity=0.159 Sum_probs=92.1
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
|....=-+...++.++..+... .. ++.....+-++.-+....+.+|..+..++-.|+.. -.+..+.+.++..
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~~--~~-~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-----~~l~~~~~~I~e~ 379 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRPL--FR-KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS-----TPLSKMSEAILEA 379 (815)
T ss_pred chhHHHHHHHHHHHHHHhcchh--hH-HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHH
Confidence 3444444555666677665431 11 11111223333344567899999999999888762 2577889999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHH---HHHHHHHHhhCCc
Q 002257 422 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEE 487 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~~~~~ 487 (946)
+.+.++-++......+.+.+.........++-+..+...+....+..+.+.-. .++..++..++++
T Consensus 380 lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 380 LKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999888898888876545566777888888888888877666543 4444444555543
No 237
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.61 E-value=5.5e+02 Score=23.88 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 002257 408 QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 445 (946)
Q Consensus 408 ~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~ 445 (946)
+.....++.++.+.|.++++.|+..|...|..++.++.
T Consensus 32 ~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg 69 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG 69 (133)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC
Confidence 35677889999999999999999999999999999863
No 238
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=25.49 E-value=4.8e+02 Score=29.05 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=20.5
Q ss_pred CccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 002257 385 PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 423 (946)
Q Consensus 385 ~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~ 423 (946)
..-=+|+.|+.=+..|+.- +.+..+.+.+.++|+
T Consensus 73 ~d~~ir~qaik~lp~fc~~-----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 73 DDVGIRRQAIKGLPLFCKG-----DALSRVNDVLVQLLN 106 (460)
T ss_pred cchhhHHHHHhccchhccC-----chhhhhHHHHHHHHH
Confidence 3455888899888888752 234444444444443
No 239
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=25.33 E-value=1.9e+02 Score=25.61 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=38.5
Q ss_pred HHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHHHHHh
Q 002257 544 LFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTI-SLEMW-SLWPLMMEALA 601 (946)
Q Consensus 544 ~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i-~p~l~-~l~~~l~~~~~ 601 (946)
.+..+.+.++..+...++.=..+.-.+++.++..++++.+.. -+..| +++++....+.
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 344455666777777776656788899999999999877644 33444 55555554443
No 240
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=25.32 E-value=6.3e+02 Score=24.43 Aligned_cols=63 Identities=11% Similarity=0.304 Sum_probs=36.1
Q ss_pred CchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHhhCHHHHHHHH
Q 002257 657 EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEK-S-YLKCLLVQVIADALYYNSSLTLSIL 720 (946)
Q Consensus 657 ~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~-~-~~~~~~l~v~~~~~~~~~~~~l~~L 720 (946)
..+++++..++.+++..+..-++.++..++.++...++ + .-+...+.++.. +..+|..++++-
T Consensus 91 ~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~-l~~~p~~l~~lf 155 (168)
T PF12783_consen 91 SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE-LCKDPQFLVDLF 155 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-HHhChhHHHHHH
Confidence 35677777777777666666667777777776655222 2 233334444443 335666555443
No 241
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=25.19 E-value=1.2e+03 Score=27.77 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=43.1
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHhc
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPE--LPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~--~~V~~~Aa~Al~~~~~~~ 444 (946)
.+-..|.++|+|..++ .+++--..|+. .+ +++....++..+++.+.+++ ..+|..|+.=|..|+-..
T Consensus 311 ~Ll~~F~~~ILpT~~s--r~vQFl~Fy~~------s~-~~~~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRA 379 (563)
T PF05327_consen 311 TLLSIFESHILPTHKS--RHVQFLLFYFC------SL-DPELADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARA 379 (563)
T ss_dssp HHHHHHHHTCCCC-S---SSTTHHHHHHH------TT-SHHHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHccCCCcc--chHHHHHHHHH------Hc-CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3446678899987654 33443333333 23 45677788888888876653 447899999999998864
No 242
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=25.07 E-value=2e+02 Score=29.21 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHH-HHHHHHhhhhcCCcchHHHHHHHHHh
Q 002257 299 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALL-AIGALCDKLKQTEPYKSELERMLVQH 377 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~-alg~ia~~l~~~~~~~~~l~~~l~~~ 377 (946)
.|.+|.+++...-...... -++.+...+..- .||-.-|+.-. ++|.+.. ... .+ ...
T Consensus 62 ~r~~al~~l~~~~~~~~~~----~~~~~~~~l~~~-------~~Wd~vD~~~~~i~g~~~~---~~~----~~----~~~ 119 (208)
T cd07064 62 YQYVAIDLLRKYKKFLTPE----DLPLLEELITTK-------SWWDTVDSLAKVVGGILLA---DYP----EF----EPV 119 (208)
T ss_pred HHHHHHHHHHHHHhcCCHH----HHHHHHHHHcCC-------chHHHHHHHHHHHhHHHHh---CCh----hH----HHH
Confidence 4777777776643333222 244444444431 38999886433 3344321 111 11 122
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
+..-..+++.++|+.|+...-.|. .......++..+..++.|++.-|+.....+|+.+... .++.+.+|+
T Consensus 120 l~~W~~s~~~W~rR~ai~~~l~~~-----~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~--d~~~V~~fl 189 (208)
T cd07064 120 MDEWSTDENFWLRRTAILHQLKYK-----EKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT--NPDWVRDFV 189 (208)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHH-----HccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc--CHHHHHHHH
Confidence 222345789999999986543332 2233456677777788888888999889999988776 345555554
No 243
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=23.98 E-value=4.1e+02 Score=29.71 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=39.5
Q ss_pred CccchhHHHHHHHHhhhcc-----ccCChhHHHHHHHHHHhcCC--CCCCchHHHHHHHHHHHHHhcc
Q 002257 385 PVGHLRAKAAWVAGQYAHI-----NFSDQNNFRKALHSVVSGLR--DPELPVRVDSVFALRSFVEACR 445 (946)
Q Consensus 385 ~~~~lr~ra~~~l~~~~~~-----~f~~~~~~~~~~~~l~~~L~--d~~~~V~~~Aa~Al~~~~~~~~ 445 (946)
++|.+ +.+.|++-+.-+- .-........+++.+++|+- ++.++||..|...++.+++.+.
T Consensus 224 p~p~l-~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 224 PPPRL-ASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred CCCcH-HHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 34433 4566777666331 10011345677788888853 6678899999999999999874
No 244
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=23.84 E-value=1.6e+02 Score=37.02 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC----------------
Q 002257 808 DDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSD---------------- 871 (946)
Q Consensus 808 ~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d---------------- 871 (946)
+++.+++++++++||.++.+++.+.|+++.++.+. +.|+++++++.++
T Consensus 344 ~~~~~~ed~e~~ddD~e~~~ed~d~~~d~~~~~~~----------------~~d~e~~~ee~~~~~~~~~~~~~~~~~~~ 407 (840)
T PF04147_consen 344 EEGEEDEDDEEEDDDEEEEEEDEDEDEDEEDEEDE----------------ESDDEDEEEEEEEDEEEAESEEKEKKKKK 407 (840)
T ss_pred ccCccccccccccCccccccccccccchhhhcccc----------------ccccccccccccccccccccccccccccc
Q ss_pred ----CCCCCCCCCCCchHHHHHHHHHHHhhcChHHHHHHH--------ccCCHHHHHHHHHHHHH
Q 002257 872 ----DEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLT--------QTLEFQYQALANGVAQH 924 (946)
Q Consensus 872 ----~~~~~~pl~~~d~~~~~~~~l~~~~~~~~~~~~~l~--------~~l~~~~~~~l~~~~~~ 924 (946)
......--..++...-..+++.-+....+.-...++ .+|.+..+..|+.+...
T Consensus 408 ~~~~~~~~~elPftf~~P~s~eel~~lL~~~~~~~~~~iI~RIrk~~hpsLa~~NK~Kl~~f~~v 472 (840)
T PF04147_consen 408 KESSESAKSELPFTFPCPSSHEELLELLDGYSPEDQPTIIQRIRKCYHPSLAEGNKEKLQVFFGV 472 (840)
T ss_pred cccccccccCCCceecCCCCHHHHHHHHhcCCHHHHhHHHHHHHHhCCCCCCcchHHHHHHHHHH
No 245
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.75 E-value=58 Score=40.59 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=8.2
Q ss_pred cCCCCchhhHHHHHHh
Q 002257 32 DYPEQWPHLLDWVKHN 47 (946)
Q Consensus 32 D~P~~Wp~Ll~~l~~~ 47 (946)
-.|-+=|+.++.-...
T Consensus 758 ~cpPkaP~~fQkel~K 773 (3015)
T KOG0943|consen 758 GCPPKAPDCFQKELKK 773 (3015)
T ss_pred CCCCCCchHHhhhHHh
Confidence 3555556655544333
No 246
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.24 E-value=2.2e+02 Score=26.17 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=37.3
Q ss_pred hhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 400 YAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 400 ~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
++.+.+.++..+..++..+.+.|++.++-|+..|...|..++...
T Consensus 25 ia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 25 IAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 333345566778899999999999988889999999999999874
No 247
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=23.05 E-value=48 Score=21.23 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=10.2
Q ss_pred hhHHHHHHHHhhhc
Q 002257 389 LRAKAAWVAGQYAH 402 (946)
Q Consensus 389 lr~ra~~~l~~~~~ 402 (946)
+|..|.|.+|++.+
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57888888887764
No 248
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=22.99 E-value=1.4e+02 Score=36.25 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=45.0
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+-..+-.+|.|||.+... . .+ ..+..++... ....+.+|..|+|.+.+++.. ....+.+.++..
T Consensus 503 ~~~~~~~~LkaLgN~g~~--~------~i-~~l~~~i~~~-~~~~~~~R~~Ai~Alr~~~~~------~~~~v~~~l~~I 566 (618)
T PF01347_consen 503 DEEEKIVYLKALGNLGHP--E------SI-PVLLPYIEGK-EEVPHFIRVAAIQALRRLAKH------CPEKVREILLPI 566 (618)
T ss_dssp -HHHHHHHHHHHHHHT-G--G------GH-HHHHTTSTTS-S-S-HHHHHHHHHTTTTGGGT-------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCCc--h------hh-HHHHhHhhhc-cccchHHHHHHHHHHHHHhhc------CcHHHHHHHHHH
Confidence 457788889999988743 1 11 2233332211 134789999999999887542 222344445555
Q ss_pred CCC--CCCchHHHHHHHHH
Q 002257 422 LRD--PELPVRVDSVFALR 438 (946)
Q Consensus 422 L~d--~~~~V~~~Aa~Al~ 438 (946)
+.| .+.-||+.|...|-
T Consensus 567 ~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 567 FMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HH-TTS-HHHHHHHHHHHH
T ss_pred hcCCCCChhHHHHHHHHHH
Confidence 443 24559988776543
No 249
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=22.57 E-value=1.1e+02 Score=36.94 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=52.0
Q ss_pred CchhHhHHHHHHHHHHhhhhcCC-----------cchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTE-----------PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN 410 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~-----------~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~ 410 (946)
+...+.+|++++|++.......+ .....+.+++.+.+-........--+--++..+|....
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 45789999999999998865431 11112223333332211122233344445556665542
Q ss_pred HHHHHHHHHhcCCCC---CCchHHHHHHHHHHHHHh
Q 002257 411 FRKALHSVVSGLRDP---ELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~---~~~V~~~Aa~Al~~~~~~ 443 (946)
..+++.+...+.+. ...+|+.|+.||+++...
T Consensus 520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 23566677777654 455999999999977544
No 250
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=22.45 E-value=2.1e+02 Score=25.92 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=46.3
Q ss_pred HHHHHhcCC-CC-CCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhhhhhh----HHHHHHHHHHhhCCc
Q 002257 415 LHSVVSGLR-DP-ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGEE 487 (946)
Q Consensus 415 ~~~l~~~L~-d~-~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~~~e~----l~~~L~~iv~~~~~~ 487 (946)
+.-++..|. +. +..-...|..+...+++.+. -...+..+...++..|+.+-++++.+. -..+|-+++....+.
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~ 84 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEK 84 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHH
Confidence 444555555 33 44445677888999999863 234899999999999999988765433 457777777776666
Q ss_pred ccccHH
Q 002257 488 MAPYAL 493 (946)
Q Consensus 488 i~p~~~ 493 (946)
+.||..
T Consensus 85 ~~~~L~ 90 (114)
T PF10193_consen 85 VAPYLT 90 (114)
T ss_dssp HHH-HH
T ss_pred HHHHHH
Confidence 655443
No 251
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=22.26 E-value=2.1e+02 Score=30.59 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002257 780 RVFRATLDLLVAYKEQVAEAAK 801 (946)
Q Consensus 780 ~~~~~~~~ll~~l~~~i~~~~~ 801 (946)
.+.+.+.....-++++++|-.+
T Consensus 123 av~~~~~~~~~lvkDa~~El~E 144 (275)
T PF13324_consen 123 AVLRRLKQSRDLVKDALEELEE 144 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445577665443
No 252
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.67 E-value=5e+02 Score=29.03 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=82.5
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhcc-ccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHI-NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 455 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~-~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~ 455 (946)
.+++-+..-+.=+|-.|..-+-++-.. ..--.-+...+++.+...+.|.+.-||......+..++... .++.+.|++.
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~-~~e~~sp~~~ 140 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPA-CKEDQSPMVS 140 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhc-chhhhcchHH
Confidence 344445555666777777766665321 10011345566777777778999999999999999988765 4566899999
Q ss_pred HHHHHHHHHHhhhhhhh---HHHHHHHHHHhhCCcccccHHHHHHHH
Q 002257 456 QLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNL 499 (946)
Q Consensus 456 ~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~~~i~p~~~~l~~~L 499 (946)
-++.-+...|..+..+. -...+..++..+.+.+.-++..+....
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~ 187 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENF 187 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 99999998887654433 345666777788777666666654443
No 253
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=21.36 E-value=1.2e+03 Score=26.19 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHhh--hhhhhHHHHHHHHHHhhCCc
Q 002257 411 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL-NEIRPILPQLLDEFFKLMNE--VENEDLVFTLETIVDKFGEE 487 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~-~~l~p~l~~il~~Ll~ll~~--~~~e~l~~~L~~iv~~~~~~ 487 (946)
+....+.+...+-+++..||..|-+.++.++.+...- ...+-+++-++-.-+..-++ .|-+.....+.++++.-+ +
T Consensus 23 ~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~ 101 (371)
T PF14664_consen 23 LSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-G 101 (371)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-C
Confidence 3344444443333444889999999999999876421 12222333343333333222 344456666666666522 2
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHH
Q 002257 488 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLF 545 (946)
Q Consensus 488 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~ 545 (946)
...+-..++..++ .+.+. + +| .++..|++|+..+.-. +|+..
T Consensus 102 ~~~~~~~vvralv----aiae~----~---~D--~lr~~cletL~El~l~---~P~lv 143 (371)
T PF14664_consen 102 PKEIPRGVVRALV----AIAEH----E---DD--RLRRICLETLCELALL---NPELV 143 (371)
T ss_pred cccCCHHHHHHHH----HHHhC----C---ch--HHHHHHHHHHHHHHhh---CHHHH
Confidence 2223344555555 33331 1 02 2556788888877664 55544
No 254
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=21.25 E-value=1.3e+02 Score=22.31 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=22.9
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHHHHHHhhc
Q 002257 2 VRDHILVFVAQVPPLLRVQLGECLKTIIHAD 32 (946)
Q Consensus 2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D 32 (946)
+|.-+++-|...+...|.++..+|+.|.+.+
T Consensus 8 LKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 8 LKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 6888999998887889999999999998654
No 255
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=21.22 E-value=7.7e+02 Score=29.48 Aligned_cols=16 Identities=6% Similarity=0.227 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002257 778 LGRVFRATLDLLVAYK 793 (946)
Q Consensus 778 ~~~~~~~~~~ll~~l~ 793 (946)
-..++..++.-+..+-
T Consensus 199 ~~~Il~lIi~rLi~iD 214 (563)
T PF05327_consen 199 RSDILSLIIERLIKID 214 (563)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445555555544443
No 256
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=20.58 E-value=3.7e+02 Score=30.53 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=13.2
Q ss_pred CchHHHHHHHHHHHhhcChHHHHHHH
Q 002257 882 VDPFVFFVDTIKVMQASDPLRFQNLT 907 (946)
Q Consensus 882 ~d~~~~~~~~l~~~~~~~~~~~~~l~ 907 (946)
.++..-|+.+=-.+..++..+...++
T Consensus 245 TnEH~~F~kAkmrleekhr~rmd~Vm 270 (615)
T KOG3540|consen 245 TNEHADFQKAKMRLEEKHRKRMDKVM 270 (615)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665554445555554444433
No 257
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=20.52 E-value=9.3e+02 Score=24.66 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=32.1
Q ss_pred hhCHHHHHHHHHhc-CchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhccccC
Q 002257 710 YYNSSLTLSILHKL-GVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTAD 771 (946)
Q Consensus 710 ~~~~~~~l~~L~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~~~~ 771 (946)
-.++..+..++.+. +--...+..-+.... .-...+=-|+.++||-+||....+
T Consensus 99 ~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia---------~~~~f~YSRl~AIGL~~LLe~a~~ 152 (216)
T PF11264_consen 99 GKSIEDLLSWLSQKGGEGDNPLAAILQAIA---------SNPKFKYSRLFAIGLFRLLELAGA 152 (216)
T ss_pred cCCHHHHHHHHhccccccchHHHHHHHHHh---------cCCCCchHHHHHHHHHHHHHhcCc
Confidence 34666677777552 122233333344443 333455678999999999988765
No 258
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=20.25 E-value=2e+02 Score=28.95 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=51.1
Q ss_pred HHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-hCHHHHHH
Q 002257 640 SMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALY-YNSSLTLS 718 (946)
Q Consensus 640 ~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~-~~~~~~l~ 718 (946)
.++...|+ .++.. ....++.++..++.+++.+..+++.++++.+... .....-..+..+=.++..++. .+|+.+++
T Consensus 3 ~~~e~~L~-~~y~~-aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~l-r~~~~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 3 ATLESLLS-YRYQH-AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDL-RESEDFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHHhC-cchHH-HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 44555663 22222 2446889999999999987777777777765443 332334556666666666764 48999998
Q ss_pred HHH
Q 002257 719 ILH 721 (946)
Q Consensus 719 ~L~ 721 (946)
++.
T Consensus 80 ~lP 82 (198)
T PF08161_consen 80 ILP 82 (198)
T ss_pred HCC
Confidence 874
No 259
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=20.02 E-value=1e+02 Score=34.96 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=53.1
Q ss_pred hhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 002257 344 RQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 423 (946)
Q Consensus 344 ~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~ 423 (946)
-.+-++..++|.+... .. ...+.+.+.+++|++|+.+.-.++.... ..++.+...|+
T Consensus 101 ~vr~aaa~ALg~i~~~---------~a----~~~L~~~L~~~~p~vR~aal~al~~r~~----------~~~~~L~~~L~ 157 (410)
T TIGR02270 101 GLCAGIQAALGWLGGR---------QA----EPWLEPLLAASEPPGRAIGLAALGAHRH----------DPGPALEAALT 157 (410)
T ss_pred HHHHHHHHHHhcCCch---------HH----HHHHHHHhcCCChHHHHHHHHHHHhhcc----------ChHHHHHHHhc
Confidence 4577777777753321 22 2345566788999999988877766321 13456777788
Q ss_pred CCCCchHHHHHHHHHHHHH
Q 002257 424 DPELPVRVDSVFALRSFVE 442 (946)
Q Consensus 424 d~~~~V~~~Aa~Al~~~~~ 442 (946)
|++..||..|+.+|..+-.
T Consensus 158 d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 158 HEDALVRAAALRALGELPR 176 (410)
T ss_pred CCCHHHHHHHHHHHHhhcc
Confidence 9999999999999987543
Done!