Query 002257
Match_columns 946
No_of_seqs 234 out of 1268
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 18:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 100.0 3.4E-84 1.2E-88 819.0 61.1 818 2-923 86-958 (960)
2 4fdd_A Transportin-1; heat rep 100.0 3.8E-38 1.3E-42 394.3 57.4 671 2-772 91-789 (852)
3 3m1i_C Exportin-1; heat repeat 100.0 5.9E-33 2E-37 353.7 45.4 660 2-718 92-841 (1049)
4 2x1g_F Cadmus; transport prote 100.0 1.8E-31 6.1E-36 338.6 53.5 645 2-691 83-840 (971)
5 2x19_B Importin-13; nuclear tr 100.0 7.3E-31 2.5E-35 333.1 56.7 659 2-709 101-845 (963)
6 2bpt_A Importin beta-1 subunit 100.0 1.6E-30 5.4E-35 326.4 56.9 604 2-691 96-734 (861)
7 1qgr_A Protein (importin beta 100.0 1.2E-27 4.2E-32 300.6 51.0 600 2-690 91-744 (876)
8 3ibv_A Exportin-T; karyopherin 99.9 3.9E-24 1.3E-28 266.3 49.6 665 2-769 86-872 (980)
9 4hat_C Exportin-1; heat repeat 99.9 4.6E-22 1.6E-26 247.7 51.1 656 2-691 92-860 (1023)
10 3gjx_A Exportin-1; transport, 99.9 1.4E-19 4.7E-24 223.9 52.2 656 2-691 104-886 (1073)
11 1ibr_B P95, importin beta-1 su 99.8 4.8E-20 1.6E-24 213.4 23.8 338 2-423 91-461 (462)
12 1qgr_A Protein (importin beta 99.8 1.7E-17 5.6E-22 208.4 43.7 601 4-709 38-721 (876)
13 3a6p_A Exportin-5; exportin-5, 99.8 2E-17 6.7E-22 211.6 41.9 429 2-467 90-636 (1204)
14 4fdd_A Transportin-1; heat rep 99.8 5.4E-17 1.9E-21 202.8 42.2 610 5-717 132-791 (852)
15 2bpt_A Importin beta-1 subunit 99.7 8.6E-14 2.9E-18 174.1 50.3 575 7-691 185-836 (861)
16 1u6g_C TIP120 protein, CAND1; 99.7 9.2E-16 3.1E-20 199.3 33.4 599 2-691 87-744 (1230)
17 1u6g_C TIP120 protein, CAND1; 99.6 5.6E-12 1.9E-16 163.7 39.5 565 5-674 52-685 (1230)
18 1b3u_A Protein (protein phosph 99.5 5.7E-12 2E-16 150.2 32.2 557 5-705 14-582 (588)
19 1b3u_A Protein (protein phosph 99.3 2.9E-09 1E-13 126.6 34.0 510 4-647 48-568 (588)
20 2x19_B Importin-13; nuclear tr 99.2 9.5E-07 3.2E-11 111.6 52.0 588 16-691 217-875 (963)
21 2x1g_F Cadmus; transport prote 99.2 1.8E-06 6.3E-11 109.0 54.1 569 16-670 204-860 (971)
22 1ibr_B P95, importin beta-1 su 99.0 3.7E-07 1.2E-11 104.8 34.0 322 301-643 107-457 (462)
23 1wa5_C Importin alpha RE-expor 99.0 5.3E-05 1.8E-09 95.3 54.1 362 297-684 306-725 (960)
24 4hat_C Exportin-1; heat repeat 98.8 0.00062 2.1E-08 85.0 53.6 311 385-718 465-841 (1023)
25 3m1i_C Exportin-1; heat repeat 98.6 4.7E-05 1.6E-09 96.7 35.9 384 296-691 466-910 (1049)
26 2jdq_A Importin alpha-1 subuni 98.5 3.5E-05 1.2E-09 87.9 27.5 344 5-444 24-392 (450)
27 2qk1_A Protein STU2; STU2P, XM 98.5 9.3E-07 3.2E-11 92.1 12.7 180 341-540 28-224 (249)
28 4b8j_A Importin subunit alpha- 98.3 1.9E-05 6.4E-10 92.4 20.2 299 297-622 88-402 (528)
29 2vgl_B AP-2 complex subunit be 98.3 3.2E-05 1.1E-09 91.6 21.7 160 297-478 63-224 (591)
30 2jdq_A Importin alpha-1 subuni 98.2 0.00025 8.6E-09 80.6 27.3 343 297-671 34-393 (450)
31 1wa5_B Importin alpha subunit; 98.2 6.9E-06 2.4E-10 96.1 13.8 341 298-671 102-460 (530)
32 2qk2_A LP04448P; mini spindles 98.2 2.4E-05 8.2E-10 81.2 16.3 184 296-495 28-219 (242)
33 4b8j_A Importin subunit alpha- 98.2 4.8E-05 1.6E-09 88.9 19.5 261 342-621 87-359 (528)
34 1w63_A Adapter-related protein 98.1 0.00033 1.1E-08 83.2 26.3 110 342-463 120-230 (618)
35 2vgl_B AP-2 complex subunit be 98.1 0.00067 2.3E-08 80.2 27.8 245 286-579 18-267 (591)
36 3ibv_A Exportin-T; karyopherin 98.1 0.0098 3.3E-07 74.1 39.2 115 392-509 671-795 (980)
37 1wa5_B Importin alpha subunit; 98.1 0.00012 4.1E-09 85.5 20.3 303 342-670 100-414 (530)
38 2qk2_A LP04448P; mini spindles 97.9 5.9E-05 2E-09 78.1 13.2 172 341-539 27-208 (242)
39 2qk1_A Protein STU2; STU2P, XM 97.8 0.00025 8.5E-09 73.6 15.8 183 383-581 26-221 (249)
40 2vgl_A Adaptor protein complex 97.8 0.0014 4.9E-08 77.6 24.0 176 298-500 54-234 (621)
41 1w63_A Adapter-related protein 97.7 0.0093 3.2E-07 70.6 28.3 238 297-579 327-576 (618)
42 3now_A UNC-45 protein, SD10334 97.6 0.073 2.5E-06 63.9 33.4 237 319-580 375-652 (810)
43 2vgl_A Adaptor protein complex 97.5 0.0056 1.9E-07 72.4 22.8 112 342-467 124-239 (621)
44 3ul1_B Importin subunit alpha- 97.5 0.0041 1.4E-07 71.9 21.3 260 342-623 114-390 (510)
45 2z6g_A B-catenin; FULL-length, 97.5 0.082 2.8E-06 64.3 33.3 365 5-444 119-520 (780)
46 3gjx_A Exportin-1; transport, 97.5 0.0058 2E-07 76.1 22.9 306 386-714 492-863 (1073)
47 3tpo_A Importin subunit alpha- 97.4 0.0066 2.3E-07 70.6 21.3 260 342-623 133-409 (529)
48 3now_A UNC-45 protein, SD10334 97.4 0.11 3.8E-06 62.3 31.1 402 172-621 110-566 (810)
49 4hxt_A De novo protein OR329; 97.3 0.0045 1.5E-07 63.7 16.7 222 342-583 15-244 (252)
50 3ul1_B Importin subunit alpha- 97.1 0.0071 2.4E-07 69.9 16.7 333 381-731 65-408 (510)
51 4db8_A Armadillo-repeat protei 97.0 0.0043 1.5E-07 64.1 12.7 218 342-579 25-250 (252)
52 3tpo_A Importin subunit alpha- 97.0 0.0078 2.7E-07 70.0 15.7 331 382-731 85-427 (529)
53 4hxt_A De novo protein OR329; 97.0 0.008 2.7E-07 61.8 14.2 184 379-580 8-199 (252)
54 2z6g_A B-catenin; FULL-length, 96.8 0.043 1.5E-06 66.8 20.5 289 298-620 130-428 (780)
55 3a6p_A Exportin-5; exportin-5, 96.7 2.6 8.9E-05 53.7 43.7 272 408-690 346-681 (1204)
56 1xqr_A HSPBP1 protein; armadil 96.7 0.022 7.5E-07 60.3 14.7 128 298-444 97-240 (296)
57 4db6_A Armadillo repeat protei 96.6 0.0084 2.9E-07 59.9 10.4 157 297-468 26-192 (210)
58 4db6_A Armadillo repeat protei 96.5 0.014 4.9E-07 58.2 11.5 185 377-579 16-208 (210)
59 2z6h_A Catenin beta-1, beta-ca 96.5 0.12 4E-06 61.6 21.3 255 342-621 27-293 (644)
60 1xqr_A HSPBP1 protein; armadil 96.4 0.022 7.7E-07 60.2 12.7 95 377-476 85-187 (296)
61 2z6h_A Catenin beta-1, beta-ca 96.4 0.15 5.2E-06 60.5 21.6 306 381-713 22-339 (644)
62 4db8_A Armadillo-repeat protei 96.3 0.0069 2.4E-07 62.5 8.3 172 297-480 26-204 (252)
63 1jdh_A Beta-catenin; beta-cate 96.0 0.27 9.2E-06 56.6 20.6 258 342-621 30-296 (529)
64 3u0r_A Apoptosis inhibitor 5; 95.8 2.9 9.9E-05 46.0 26.8 296 384-717 39-365 (507)
65 2iw3_A Elongation factor 3A; a 95.8 0.072 2.5E-06 65.0 14.3 209 391-621 70-281 (986)
66 3ltm_A Alpha-REP4; protein eng 95.6 0.073 2.5E-06 53.0 11.8 172 342-580 32-203 (211)
67 3ltj_A Alpharep-4; protein eng 95.6 0.14 4.7E-06 50.5 13.6 91 321-441 14-104 (201)
68 3ltj_A Alpharep-4; protein eng 95.5 0.039 1.3E-06 54.6 9.0 108 297-441 28-135 (201)
69 1oyz_A Hypothetical protein YI 95.4 0.073 2.5E-06 55.7 11.2 150 298-482 69-218 (280)
70 1jdh_A Beta-catenin; beta-cate 95.3 0.34 1.2E-05 55.6 17.8 256 297-580 31-295 (529)
71 3ltm_A Alpha-REP4; protein eng 95.3 0.069 2.4E-06 53.2 10.1 107 297-440 33-139 (211)
72 2iw3_A Elongation factor 3A; a 95.2 1 3.5E-05 55.1 21.4 224 347-601 70-304 (986)
73 1xm9_A Plakophilin 1; armadill 95.1 1 3.4E-05 50.8 20.3 115 342-465 15-136 (457)
74 3nmw_A APC variant protein; AR 95.1 0.43 1.5E-05 51.8 16.4 227 342-580 45-292 (354)
75 1oyz_A Hypothetical protein YI 94.6 0.1 3.4E-06 54.6 9.6 116 297-441 105-220 (280)
76 3l6x_A Catenin delta-1; cateni 94.4 9.3 0.00032 44.0 26.9 360 381-768 56-477 (584)
77 3grl_A General vesicular trans 94.2 5.3 0.00018 46.0 22.8 333 378-730 127-523 (651)
78 2db0_A 253AA long hypothetical 94.1 0.68 2.3E-05 43.8 12.5 135 295-443 44-211 (253)
79 3l6x_A Catenin delta-1; cateni 94.1 1.1 3.9E-05 51.6 17.5 158 299-467 64-246 (584)
80 1te4_A Conserved protein MTH18 93.8 0.097 3.3E-06 47.7 6.4 76 342-439 55-130 (131)
81 4ffb_C Protein STU2; tubulin f 93.7 0.41 1.4E-05 50.0 12.0 196 272-484 3-211 (278)
82 3tjz_B Coatomer subunit gamma; 93.5 0.22 7.6E-06 53.6 9.6 109 320-451 67-175 (355)
83 3opb_A SWI5-dependent HO expre 93.4 16 0.00055 43.2 33.5 122 344-467 574-708 (778)
84 1xm9_A Plakophilin 1; armadill 93.2 2.2 7.5E-05 48.0 17.9 157 297-466 16-195 (457)
85 1te4_A Conserved protein MTH18 91.9 0.16 5.4E-06 46.2 5.0 77 342-441 25-101 (131)
86 3nmz_A APC variant protein; pr 91.6 2.9 9.9E-05 46.8 15.9 183 385-580 212-408 (458)
87 3b2a_A TON_1937, putative unch 91.4 7.7 0.00026 38.4 16.3 200 342-581 18-219 (265)
88 3tjz_B Coatomer subunit gamma; 91.0 0.46 1.6E-05 51.1 8.2 125 297-443 82-206 (355)
89 1vsy_4 Proteasome activator BL 90.7 11 0.00038 45.2 20.5 104 374-479 340-449 (799)
90 3oc3_A Helicase MOT1, MOT1; re 89.5 3.6 0.00012 46.1 13.3 165 294-482 185-365 (800)
91 2db0_A 253AA long hypothetical 88.9 11 0.00038 35.7 14.3 162 341-536 44-210 (253)
92 3l9t_A Putative uncharacterize 88.2 2.7 9.2E-05 41.8 10.5 126 295-443 83-208 (240)
93 4ady_A RPN2, 26S proteasome re 86.2 56 0.0019 39.6 22.2 116 342-476 408-527 (963)
94 3nmw_A APC variant protein; AR 83.9 5.3 0.00018 43.0 11.2 139 299-444 187-336 (354)
95 3opb_A SWI5-dependent HO expre 83.9 76 0.0026 37.5 41.8 252 382-650 466-760 (778)
96 4ady_A RPN2, 26S proteasome re 83.5 7.8 0.00027 46.9 13.2 78 383-467 622-699 (963)
97 3grl_A General vesicular trans 82.1 11 0.00038 43.3 13.2 197 409-622 17-243 (651)
98 4ffb_C Protein STU2; tubulin f 82.1 5.8 0.0002 41.0 10.4 150 418-582 60-214 (278)
99 1vsy_4 Proteasome activator BL 81.4 76 0.0026 37.9 20.8 68 411-481 337-408 (799)
100 3nmz_A APC variant protein; pr 77.4 11 0.00036 42.2 11.1 140 298-444 302-452 (458)
101 2of3_A ZYG-9; multifunctional 77.1 22 0.00075 36.2 12.3 173 297-488 60-242 (266)
102 3b2a_A TON_1937, putative unch 75.1 46 0.0016 33.0 13.2 146 412-582 32-181 (265)
103 4gmo_A Putative uncharacterize 74.2 9.2 0.00031 45.4 10.1 59 382-444 43-107 (684)
104 3tj1_A RNA polymerase I-specif 72.6 31 0.0011 39.7 13.3 16 676-691 171-186 (649)
105 3oc3_A Helicase MOT1, MOT1; re 72.2 34 0.0012 38.5 12.8 189 342-560 187-388 (800)
106 2of3_A ZYG-9; multifunctional 72.0 9.4 0.00032 39.0 8.0 106 319-444 130-238 (266)
107 4atg_A TAF6; transcription, TF 68.7 26 0.00089 33.8 9.9 126 204-360 39-164 (196)
108 1vsy_5 Proteasome activator BL 60.5 67 0.0023 39.5 13.9 126 369-500 798-944 (997)
109 4atg_A TAF6; transcription, TF 59.4 1E+02 0.0035 29.6 12.1 148 299-459 24-178 (196)
110 1w9c_A CRM1 protein, exportin 57.4 1.9E+02 0.0063 30.2 23.1 121 452-582 69-198 (321)
111 3tt9_A Plakophilin-2; cell adh 52.5 24 0.00084 35.2 6.8 83 380-467 15-105 (233)
112 3fga_B Serine/threonine-protei 52.4 2.5E+02 0.0086 30.2 15.6 115 348-468 190-305 (403)
113 3tt9_A Plakophilin-2; cell adh 51.5 22 0.00077 35.4 6.3 65 377-444 56-126 (233)
114 3jxy_A Alkylpurine DNA glycosy 48.6 30 0.001 34.5 6.8 127 299-454 77-205 (232)
115 2b6c_A Hypothetical protein EF 46.6 20 0.00068 35.5 5.1 130 297-454 69-198 (220)
116 1upk_A MO25 protein; transfera 43.9 95 0.0032 32.5 9.7 79 369-448 206-289 (341)
117 3fga_B Serine/threonine-protei 43.7 1.7E+02 0.006 31.5 12.1 99 527-627 271-373 (403)
118 3tj1_A RNA polymerase I-specif 40.4 3E+02 0.01 31.6 14.0 67 369-444 385-453 (649)
119 2npp_B PP2A, B subunit, serine 37.4 3.2E+02 0.011 29.9 13.2 49 527-577 304-352 (449)
120 4gmo_A Putative uncharacterize 35.0 1E+02 0.0036 36.1 9.7 30 414-444 36-65 (684)
121 1ho8_A Vacuolar ATP synthase s 33.1 5.3E+02 0.018 28.4 19.9 121 304-448 80-203 (480)
122 2npp_B PP2A, B subunit, serine 32.7 5.2E+02 0.018 28.2 16.0 115 347-467 222-337 (449)
123 2fv2_A RCD1 required for cell 31.3 2.2E+02 0.0074 28.6 9.5 142 230-402 71-224 (268)
124 3qml_C Protein SLS1, nucleotid 30.2 4.7E+02 0.016 26.9 12.2 141 12-186 81-250 (315)
125 1w9c_A CRM1 protein, exportin 29.5 5E+02 0.017 26.9 20.5 151 37-220 67-226 (321)
126 3d9j_A RNA-binding protein 16; 29.5 2.3E+02 0.0077 25.6 8.9 89 413-507 5-100 (145)
127 4fp9_B Mterf domain-containing 28.0 26 0.00091 37.0 2.5 9 664-672 167-175 (335)
128 1lsh_A Lipovitellin (LV-1N, LV 25.1 4.9E+02 0.017 32.1 13.7 158 304-496 420-586 (1056)
129 2lwd_A Probable ATP-dependent 21.4 67 0.0023 27.2 3.3 52 263-326 32-85 (100)
130 2ca6_A RAN GTPase-activating p 21.3 39 0.0013 36.4 2.4 8 783-790 323-330 (386)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=3.4e-84 Score=819.05 Aligned_cols=818 Identities=17% Similarity=0.241 Sum_probs=664.4
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhccc--CCCcCcc
Q 002257 2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF--KSDEERT 76 (946)
Q Consensus 2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~--~~~~~~~ 76 (946)
||+.|+++|.++++.||++++.+|+.|+++|||++||+|+|.|++.++++ .++|+|.+|++|+|+|++ +.++.+.
T Consensus 86 ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~ 165 (960)
T 1wa5_C 86 IKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFL 165 (960)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Confidence 89999999998889999999999999999999999999999999999877 679999999999999985 4444455
Q ss_pred hHHHHHHHHhHHHHHHHHHH---hhccCCC----hhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCC
Q 002257 77 PVYRIVEETFHHLLNIFNRL---VQIVNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 149 (946)
Q Consensus 77 ~l~~i~~~~~p~L~~i~~~l---~~~~~~~----~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~ 149 (946)
++..++..++|.++++|..+ ++....+ ....++++.++|+|++++.+++|+++ .+++..|++.|.+++...
T Consensus 166 ~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 243 (960)
T 1wa5_C 166 EIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF--EDNIQVGMGIFHKYLSYS 243 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH--HHTHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH--HHHHHHHHHHHHHHHcCC
Confidence 67778899999999998775 3332111 12457788999999999889999988 569999999999999876
Q ss_pred CCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCH
Q 002257 150 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 229 (946)
Q Consensus 150 ~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d 229 (946)
.|.. ..|+++++..+||++|+|+|+++.+++++|+. ++.+|++.+++.+|+.+.... +.+.++
T Consensus 244 ~p~~--~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~--------------~f~~~~~~~~~~~~~~l~~~~-~~~~~~ 306 (960)
T 1wa5_C 244 NPLL--EDPDETEHASVLIKVKSSIQELVQLYTTRYED--------------VFGPMINEFIQITWNLLTSIS-NQPKYD 306 (960)
T ss_dssp SCCC--C------CCCHHHHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHHHHCC-SCTTSH
T ss_pred CCcc--cCCcccccccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcC-CCcCcH
Confidence 5522 23334455678899999999999999999742 236788999999999997643 346779
Q ss_pred HHHHHHHHHHHhhccCchhhhhch--hhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHH
Q 002257 230 RVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFV 307 (946)
Q Consensus 230 ~~~~~~l~fl~~~~~~~~~~~~l~--~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll 307 (946)
+++.++++||+++++.+..++.++ +++..++..+++|+|+++++|++.|++||+||++++.|+ ++.+|+|+||.++|
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~-~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCc-ccccCcHHHHHHHH
Confidence 999999999999999888888887 899999988999999999999999999999999998775 56789999999999
Q ss_pred HHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-CCcch-----HHHHHHHHHhcccC
Q 002257 308 SELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-TEPYK-----SELERMLVQHVFPE 381 (946)
Q Consensus 308 ~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-~~~~~-----~~l~~~l~~~v~p~ 381 (946)
..++.++++.+++.+++++.++++++.+++. .+|+.||||++++|+++++... ..... .++++|+.++|+|.
T Consensus 386 ~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~--~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~ 463 (960)
T 1wa5_C 386 KELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD 463 (960)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH
Confidence 9999999989999999999999998866553 3899999999999999976421 11111 17889999999999
Q ss_pred CCCC---ccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc---------cccc
Q 002257 382 FSSP---VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---------DLNE 449 (946)
Q Consensus 382 l~~~---~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~---------~~~~ 449 (946)
++++ +|+||+||||++|+|+++. +++.+..+++.++++|.|++++||.+||.||.+|++... .++.
T Consensus 464 l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 464 LTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred hcCCCCCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 9877 9999999999999999853 568999999999999999899999999999999998532 3577
Q ss_pred cccchHHHHHHHHHHHhhh--------hhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhh
Q 002257 450 IRPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 521 (946)
Q Consensus 450 l~p~l~~il~~Ll~ll~~~--------~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 521 (946)
+.||++++++.|+.++++. +++.++.+|++++..+++++.||+..++++|...+.++++ ++ +..
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~----~~----~~~ 613 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK----NP----SNP 613 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT----SC----CCH
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh----CC----CCc
Confidence 9999999999999999986 7788999999999999999999999999999987766543 33 334
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HH
Q 002257 522 LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMM--EA 599 (946)
Q Consensus 522 ~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~--~~ 599 (946)
.+.+.++++|+.++++ ..|+.+..+++.++|++..+|+++..+|.++++++++.+++..++++|.||++||.++ ..
T Consensus 614 ~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~ 691 (960)
T 1wa5_C 614 RFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNV 691 (960)
T ss_dssp HHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGG
T ss_pred HHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHH
Confidence 5567899999999998 4566788999999999999999988899999999999999887899999999999998 55
Q ss_pred HhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccC-chhch
Q 002257 600 LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWV 678 (946)
Q Consensus 600 ~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~-~~~~l 678 (946)
+... ++++.++++|.+|+..+++.|++ ++.+++++.+++.++. . ...|+.+++.++.++|++ +.||+
T Consensus 692 ~~~~--~~~~~~~~~L~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~-~---~~~a~~ll~~i~~~~~~~~~~~yl 759 (960)
T 1wa5_C 692 WELK--GNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKA-Y---EVHGFDLLEHIMLLIDMNRLRPYI 759 (960)
T ss_dssp GCCT--TTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTT-T---HHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred hcCC--CCchhHHHHHHHHHHhChHHHHH------HHHHHHHHHHHhCCCc-c---cchHHHHHHHHHHHCCHHHHHHHH
Confidence 5533 69999999999999999888872 6778899999987653 2 157999999999999998 99999
Q ss_pred HHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHhhCHHHHHHHHHhcC---chHHHHHHHHHhHHHHhhhccccccccchh
Q 002257 679 EPYLRITVERLRRAEKS-YLKCLLVQVIADALYYNSSLTLSILHKLG---VATEVFNLWFQMLQQVKKNGLRVNFKREHD 754 (946)
Q Consensus 679 ~~il~~~~~~L~~~~~~-~~~~~~l~v~~~~~~~~~~~~l~~L~~~~---~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d 754 (946)
+.++..++++++..++. ..+.+++++...+++++|+.+++.|++.+ ....+++.|+.++. ++.+.+|
T Consensus 760 ~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~---------~~~~~~e 830 (960)
T 1wa5_C 760 KQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLP---------TIGNLLD 830 (960)
T ss_dssp HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGG---------GCCSHHH
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchh---------hccCHHH
Confidence 99999999999885444 44477777777888999999999999754 12234448999998 9999999
Q ss_pred hHHHHHHHHHHhccc---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCC
Q 002257 755 KKVCCLGLTSLLALT---ADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMG 831 (946)
Q Consensus 755 ~Kl~~lal~~Ll~~~---~~~l~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~ 831 (946)
||++++||++|++.+ ++.+.+ .|+.++.++++++..++++ ... +| ++ +.+ |
T Consensus 831 rk~~~~gl~~ll~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~~~--------~~~-~~----~~--e~~-d--------- 884 (960)
T 1wa5_C 831 RKIALIGVLNMVINGQFFQSKYPT-LISSTMNSIIETASSQSIA--------NLK-ND----YV--DLD-N--------- 884 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHCGG-GHHHHHHHHHHHHHSCSTT--------CSC-CS----CC----------------
T ss_pred HHHHHHHHHHHHhcccccchhHHH-HHHHHHHHHHHHHhCCccc--------ccC-Cc----cc--ccc-c---------
Confidence 999999999999987 222222 6999999999988854421 001 10 00 000 0
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC----chHHHHHHHHHHHhhcChHHHHHH-
Q 002257 832 VDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEV----DPFVFFVDTIKVMQASDPLRFQNL- 906 (946)
Q Consensus 832 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~~~pl~~~----d~~~~~~~~l~~~~~~~~~~~~~l- 906 (946)
+||.++++..|.++... + ....||++++ |++.||++.|+++++++|++|+.+
T Consensus 885 --~~~~~~~~~~~~~L~~~---~------------------~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~~~~~l~ 941 (960)
T 1wa5_C 885 --LEEISTFGSHFSKLVSI---S------------------EKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTI 941 (960)
T ss_dssp ---CCCCCTTCCCCCCGGG---C------------------CCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred --cccccccchHHHHHHhC---C------------------CCCCCChhhhcCcCCHHHHHHHHHHHHhccCCchHHHHH
Confidence 00011222223321110 0 0114677777 999999999999999999999998
Q ss_pred HccCCHHHHHHHHHHHH
Q 002257 907 TQTLEFQYQALANGVAQ 923 (946)
Q Consensus 907 ~~~l~~~~~~~l~~~~~ 923 (946)
.++|++++|+.|+++++
T Consensus 942 ~~~l~~~~~~~l~~~~~ 958 (960)
T 1wa5_C 942 LPQLTQENQVKLNQLLV 958 (960)
T ss_dssp GGGSCHHHHHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHc
Confidence 77999999999999985
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=3.8e-38 Score=394.32 Aligned_cols=671 Identities=15% Similarity=0.176 Sum_probs=487.3
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcchH
Q 002257 2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPV 78 (946)
Q Consensus 2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~l 78 (946)
||+.++++|.++++.||++++.+|+.|+++|+|+.||+++|.|.+.++++ ..++|+.+|+.+++.+...... ..+
T Consensus 91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~--~~~ 168 (852)
T 4fdd_A 91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS--DVL 168 (852)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH--CSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch--hhh
Confidence 79999999999999999999999999999999999999999999999887 4689999999999987522100 011
Q ss_pred HHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCC
Q 002257 79 YRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPAD 158 (946)
Q Consensus 79 ~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d 158 (946)
...+..++|.+++.+ ++. ...++..+++++..++.. .+..+ ...++.+++.+...++. .+
T Consensus 169 ~~~~~~il~~l~~~l----~~~-----~~~vR~~A~~aL~~~~~~-~~~~~--~~~~~~~l~~l~~~~~d--------~~ 228 (852)
T 4fdd_A 169 DRPLNIMIPKFLQFF----KHS-----SPKIRSHAVACVNQFIIS-RTQAL--MLHIDSFIENLFALAGD--------EE 228 (852)
T ss_dssp SSCHHHHHHHHTTTT----TCS-----SHHHHHHHHHHHHTTTTT-TCHHH--HTSHHHHHHHHHHHHTC--------CC
T ss_pred cchHHHHHHHHHHHh----cCC-----CHHHHHHHHHHHHHHHhc-ccHHH--HHHHHHHHHHHHHHcCC--------CC
Confidence 112344455544432 221 356788888888755422 23322 23455666655555432 12
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 002257 159 PEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQY 238 (946)
Q Consensus 159 ~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~f 238 (946)
..+|++++++|.++...++ + ++.+|++.+++.++..+.. .++.+...+++|
T Consensus 229 ---------~~vr~~a~~~L~~l~~~~~--~------------~~~~~l~~l~~~l~~~~~~------~~~~vr~~a~e~ 279 (852)
T 4fdd_A 229 ---------PEVRKNVCRALVMLLEVRM--D------------RLLPHMHNIVEYMLQRTQD------QDENVALEACEF 279 (852)
T ss_dssp ---------HHHHHHHHHHHHHHHHHCH--H------------HHGGGHHHHHHHHHHHHTC------SSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhCH--H------------HHHHHHHHHHHHHHHHccC------CcHHHHHHHHHH
Confidence 4578999999999988752 1 4566778888887776632 357899999999
Q ss_pred HHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCccc
Q 002257 239 LSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKEN 318 (946)
Q Consensus 239 l~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~ 318 (946)
|.++++.+..++.++|++..++..+ ++.|+++++|.+.|+.|+++.- +.|+..+.|++|.+|...+..++...++.+
T Consensus 280 l~~l~~~~~~~~~~~~~~~~l~p~l-l~~l~~~e~d~~~~~~d~~ed~--~~dd~~~~~~vr~~a~~~L~~la~~~~~~~ 356 (852)
T 4fdd_A 280 WLTLAEQPICKDVLVRHLPKLIPVL-VNGMKYSDIDIILLKGDVEGGS--GGDDTISDWNLRKCSAAALDVLANVYRDEL 356 (852)
T ss_dssp HHHHTTSTTHHHHHTTTHHHHHHHH-HHHTSCCHHHHHHHHC--------------CCCCHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHH-HHHcCCcHhHHHHhcCCccccc--ccccccccchHHHHHHHHHHHHHHhccHHH
Confidence 9999987777778899999999865 5999999999887777775531 111111468999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHH
Q 002257 319 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 398 (946)
Q Consensus 319 l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 398 (946)
++.+++++.+.+++ .+|+.|++|+.++|.+++++.+. +...++. +...+++.++++++.+|..|||++|
T Consensus 357 ~~~l~~~l~~~l~~--------~~~~~R~aa~~alg~i~~~~~~~--~~~~l~~-~l~~l~~~l~d~~~~Vr~~a~~~l~ 425 (852)
T 4fdd_A 357 LPHILPLLKELLFH--------HEWVVKESGILVLGAIAEGCMQG--MIPYLPE-LIPHLIQCLSDKKALVRSITCWTLS 425 (852)
T ss_dssp HHHHHHHHHHHHTC--------SSHHHHHHHHHHHHHTTTTTHHH--HGGGHHH-HHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcchHH--HHHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999888864 28999999999999999987541 1123334 3456777889999999999999999
Q ss_pred hhhcccc--CChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh---H
Q 002257 399 QYAHINF--SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---L 473 (946)
Q Consensus 399 ~~~~~~f--~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~---l 473 (946)
++++..- .....+..+++.+++.|.|++..||..|+.||.++++.. ...+.||++.+++.|+.+++..+... +
T Consensus 426 ~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~--~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~ 503 (852)
T 4fdd_A 426 RYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA--CTELVPYLAYILDTLVFAFSKYQHKNLLIL 503 (852)
T ss_dssp HTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH--GGGGGGGHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--hHhhHhHHHHHHHHHHHHHHHhChHHHHHH
Confidence 9987320 123578899999999999988999999999999999985 45699999999999999998765544 4
Q ss_pred HHHHHHHHHhhCCccc--ccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCC-hhHHHHHHh
Q 002257 474 VFTLETIVDKFGEEMA--PYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL-PHLFVQIEP 550 (946)
Q Consensus 474 ~~~L~~iv~~~~~~i~--p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~-~~~~~~l~~ 550 (946)
..++..++...++.+. +|...+++.+. +.|+.-. ++ +... ..++++++.+..+++.. ......+.+
T Consensus 504 ~~ai~~l~~~~~~~~~~~~~~~~l~p~l~----~~~~~l~-d~----~~~~--~~~~~~l~~i~~~~g~~~~~~~~~i~~ 572 (852)
T 4fdd_A 504 YDAIGTLADSVGHHLNKPEYIQMLMPPLI----QKWNMLK-DE----DKDL--FPLLECLSSVATALQSGFLPYCEPVYQ 572 (852)
T ss_dssp HHHHHHHHHHHGGGGCCHHHHHHHHHHHH----HHHHHSC-TT----CTTH--HHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHH----HHHHhcc-cc----cHHH--HHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 6777788877776653 25555555544 4454311 21 2222 25788888888887642 111222333
Q ss_pred hHHHHHHHhcc-------------cchhhHHHHHHHHHHHHHhcC-CCCCHHH--HHHHHHHHHHHhhhHhhhHhhhHHH
Q 002257 551 TLLPIMRRMLT-------------TDGQEVFEEVLEIVSYMTFFS-PTISLEM--WSLWPLMMEALADWAIDFFPNILVP 614 (946)
Q Consensus 551 ~l~p~i~~~l~-------------~~~~~~~~~~l~ll~~l~~~~-~~i~p~l--~~l~~~l~~~~~~~~~~~l~~~~~~ 614 (946)
.++..+...+. .+..++...++++++.++... ..+.|.+ -.+++.++..+.+...+.......+
T Consensus 573 ~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~ 652 (852)
T 4fdd_A 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL 652 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHH
Confidence 33444444331 112457778889999988765 3454444 3678888887764334555667777
Q ss_pred HHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHh-hh
Q 002257 615 LDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AE 693 (946)
Q Consensus 615 L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~-~~ 693 (946)
+..+....+..+. +|+..++..+.+.+... +.+.+..|+..++.+..+++..+.||++.++..++..+.+ ..
T Consensus 653 l~~l~~~~~~~~~-----~~l~~~lp~l~~~l~~~--~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~ 725 (852)
T 4fdd_A 653 LGDLTKACFQHVK-----PCIADFMPILGTNLNPE--FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT 725 (852)
T ss_dssp HHHHHHHCGGGTG-----GGHHHHHHHHHHTCCTT--SHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHhhHHHH-----HHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCC
Confidence 8887777777666 78999888888887432 2233457888899999999888999999999999998876 33
Q ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhccccCC
Q 002257 694 KSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQ 772 (946)
Q Consensus 694 ~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~~~~~ 772 (946)
...++...+..+.++...+|..+-.. ++.++..|+..++ +.....+|....-|||.++..+++.
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~~~~~~------l~~~~~~~~~~l~---------~~~d~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQEVAPM------LQQFIRPWCTSLR---------NIRDNEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGG------HHHHHHHHHHHHH---------TSCSSHHHHHHHHHHHHHHHHCGGG
T ss_pred CchHHHHHHHHHHHHHHhCHHHhCcc------HHHHHHHHHHHhc---------cccccHHHHHHHHHHHHHHHhChHh
Confidence 45677788888888888899866433 4579999999999 8888889999999999999987653
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=5.9e-33 Score=353.66 Aligned_cols=660 Identities=11% Similarity=0.141 Sum_probs=408.4
Q ss_pred hhhhHHHHHhcC---------ChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--hHHHHHHHHHHHHHhcc-c
Q 002257 2 VRDHILVFVAQV---------PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKYE-F 69 (946)
Q Consensus 2 Ir~~Ll~~l~~~---------~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i~k~~~-~ 69 (946)
||+.|++.+.+. ++.||++++.+|+.|+++|||++||++++.|++.++++ ...++|.+|..+++... +
T Consensus 92 ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~~ 171 (1049)
T 3m1i_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDF 171 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHh
Confidence 799999998642 47899999999999999999999999999999999755 34556666665554432 1
Q ss_pred CCC----cCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhh-hhhhhc-------------CC
Q 002257 70 KSD----EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL-EIPKQL-------------LD 131 (946)
Q Consensus 70 ~~~----~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~-~lp~~~-------------~~ 131 (946)
+.+ ..+.++...+...+|.++.++.+.++... ...++..+++++.+++.. ..+..+ .+
T Consensus 172 ~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~----~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~ 247 (1049)
T 3m1i_C 172 SAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS----SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS 247 (1049)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCC
Confidence 111 11223445555567777777777665421 245678888988765432 211111 12
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHH-----------HHHhCCCCCCChh-hHHHH
Q 002257 132 PNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRL-----------YTRFGDLKLQNPE-NRAFA 199 (946)
Q Consensus 132 ~~~l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l-----------~~~y~~~~~~~~~-~~~f~ 199 (946)
.+....|++.+..+++...+. .+.... .++.++.-.++..+ ...|+.+...+.+ ...++
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~----~~~~~~-----~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~ 318 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQ----DNDLIK-----RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLA 318 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT----TCHHHH-----HHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCc----chhhHH-----HHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHH
Confidence 334456777778887764431 110000 24444433333322 2233322111111 12333
Q ss_pred HHHH---Hhh---------HHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcc----CchhhhhchhhHHHHHHHH
Q 002257 200 QMFQ---KNY---------AGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS----KNSMYNLLQPRLDVLLFEI 263 (946)
Q Consensus 200 ~~f~---~~~---------~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~----~~~~~~~l~~~l~~li~~i 263 (946)
+.|. ..+ ....+..++..+-.... ..++.+...+++||.++++ .+..+..+++++..++..
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~--~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~- 395 (1049)
T 3m1i_C 319 MFLTTYLARNRALLESDESLRELLLNAHQYLIQLSK--IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLV- 395 (1049)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH-
Confidence 3331 111 01123334444333222 1257889999999999887 556677888999999975
Q ss_pred HhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCc
Q 002257 264 VFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPY 343 (946)
Q Consensus 264 i~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~ 343 (946)
+++.|++.+ |.+.+++||.||+++..++ +|.++.|.++.++|..++..++..+++.+++++.+.++. + ..+|
T Consensus 396 ll~~m~~~e-d~~~~~dd~~e~~r~~~~d-~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~----~--~~~W 467 (1049)
T 3m1i_C 396 IIENMVRPE-EVLVVENDEGEIVREFVKE-SDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG----S--EWSW 467 (1049)
T ss_dssp HHHTCCCCT-TCCEEECTTSCEEECSSCC-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS----S--SCCH
T ss_pred HHHhcCCCc-ceeeeeCCCCcchHhhhcc-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCC----C--CCCH
Confidence 558888854 4332344777787766554 355789999999999999888888888888887777652 1 1389
Q ss_pred hhHhHHHHHHHHHHhhhhcC--CcchHHHHHHHHHhcccCCC---CCccchhHHHHHHHHhhhccccCChhHHHHHHHHH
Q 002257 344 RQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSV 418 (946)
Q Consensus 344 ~~keaal~alg~ia~~l~~~--~~~~~~l~~~l~~~v~p~l~---~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l 418 (946)
+.+||+++++|++++++.+. +.+...+.+++.+ +|++. +++|.+|.++||++|+|+++....++.+..+++.+
T Consensus 468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~l 545 (1049)
T 3m1i_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545 (1049)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999876532 2333455555543 34443 36888998999999999986545668899999999
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHhcc------cccccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhC--Cc
Q 002257 419 VSGLRDPELPVRVDSVFALRSFVEACR------DLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG--EE 487 (946)
Q Consensus 419 ~~~L~d~~~~V~~~Aa~Al~~~~~~~~------~~~~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~--~~ 487 (946)
+++|.+++++|+..||.|+.+|++.+. .+..+.||++++++.|..++++.+.+. +++++..++...+ +.
T Consensus 546 l~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~ 625 (1049)
T 3m1i_C 546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE 625 (1049)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999899999999999999999852 112235999999999999999876655 4456666666665 34
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCC--CChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchh
Q 002257 488 MAPYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 565 (946)
Q Consensus 488 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~ 565 (946)
..||+..+++.+...+.++......++++ +.+.......+++++..++++++. .+.|.+..++. +..
T Consensus 626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~----------~f~p~~~~i~~-~~l 694 (1049)
T 3m1i_C 626 RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA----------DFYPQLGHIYY-NML 694 (1049)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGG----------GGHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHH-HHH
Confidence 67788888877776666655432223211 111111223567777777777653 23333333322 111
Q ss_pred hHHHHHHHHHHHHHh-cCC--CCCHHH---HHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCc--ccccccCCCchHHH
Q 002257 566 EVFEEVLEIVSYMTF-FSP--TISLEM---WSLWPLMMEALADWAIDFFPNILVPLDNYISRGT--AHFLTCKEPDYQQS 637 (946)
Q Consensus 566 ~~~~~~l~ll~~l~~-~~~--~i~p~l---~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~--~~~l~~~~~~~~~~ 637 (946)
.++.....++..... ... .-.|.+ ..+.|.+.+ .+.+|+.... +.....-.++.++.
T Consensus 695 ~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~---------------ll~~~~~~~~~l~~~~~~~~~~~l~~ 759 (1049)
T 3m1i_C 695 QLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILK---------------LVETYISKARNLDDVVKVLVEPLLNA 759 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHH---------------HHHHHHHHCSCHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHH---------------HHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 122222222222111 110 112222 233444433 3344433321 00000000134555
Q ss_pred HHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHhh
Q 002257 638 LWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR------AEKSYLKCLLVQVIADALYY 711 (946)
Q Consensus 638 i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~------~~~~~~~~~~l~v~~~~~~~ 711 (946)
+++.+.+..... .+ ..++.++..++..+++.+.++++.++..++.+.-. ...+.++..++.++.+++.+
T Consensus 760 ll~~~~~~~~~~--~~---~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~ 834 (1049)
T 3m1i_C 760 VLEDYMNNVPDA--RD---AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEK 834 (1049)
T ss_dssp HHHHHHHSCGGG--CC---THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccc--cc---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHh
Confidence 566655521111 11 45899999999999988899999999988887522 34677999999999988888
Q ss_pred CHHHHHH
Q 002257 712 NSSLTLS 718 (946)
Q Consensus 712 ~~~~~l~ 718 (946)
+|..++.
T Consensus 835 ~~~~l~~ 841 (1049)
T 3m1i_C 835 SFAAFLE 841 (1049)
T ss_dssp CTHHHHH
T ss_pred CHHHHHc
Confidence 8887664
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-31 Score=338.64 Aligned_cols=645 Identities=12% Similarity=0.140 Sum_probs=401.2
Q ss_pred hhhhHHHHHhc---CChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcch-------h--hHHHHHHHHHHHHHh-cc
Q 002257 2 VRDHILVFVAQ---VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD-------Q--QVYGALFVLRILSRK-YE 68 (946)
Q Consensus 2 Ir~~Ll~~l~~---~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s-------~--~~~~~L~~L~~i~k~-~~ 68 (946)
||+.|++.+.+ .++.||++++.+++.|++++|| .||++++.|++.+++ + ...++|.+|..+++. ++
T Consensus 83 ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~ 161 (971)
T 2x1g_F 83 LKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQV 161 (971)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhc
Confidence 79999999975 3789999999999999999999 999999999999987 4 467889999888864 34
Q ss_pred cCCCcCcchHHHHHHHHhHHHHHHHHHHhhccCC---ChhHHHHHHHHHHHhHHHHhh-hhhhhcCChhhHHHHHHHHH-
Q 002257 69 FKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNP---SLEVADLIKLICKIFWSSIYL-EIPKQLLDPNVFNAWMILFL- 143 (946)
Q Consensus 69 ~~~~~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~---~~~~~~~~~~~lki~~~~~~~-~lp~~~~~~~~l~~w~~~~~- 143 (946)
++....|..+...+...+|.++.++.+.++.... ......++..++|++...+.. .+|.. ....+++.+.
T Consensus 162 ~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-----~~~~ll~~l~~ 236 (971)
T 2x1g_F 162 IHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-----GCVTITAVLLE 236 (971)
T ss_dssp CCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-----GHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-----ccccHHHHHHh
Confidence 4432333455666666778877777776643211 112336788899999876654 44533 1233444333
Q ss_pred ---------------------------------HHhcCCCCCCCCCCChhhh--------h-hcchhHH-H------HHH
Q 002257 144 ---------------------------------NVLERPVPSEGEPADPEQR--------K-SWGWWKV-K------KWT 174 (946)
Q Consensus 144 ---------------------------------~il~~~~~~~~~~~d~~~~--------~-~~~~~k~-k------~~~ 174 (946)
.++..+-+.. ..... . ...+++. . ++.
T Consensus 237 L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~ 312 (971)
T 2x1g_F 237 VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN----YPKTAFVLIKMFLDSLSEITKTEWKRENDNEDI 312 (971)
T ss_dssp HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG----CHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHH
T ss_pred hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc----cHHHHHHHHHHHHHhHHHHHHHHhcccccchHH
Confidence 3332210000 00000 0 0000000 0 133
Q ss_pred HHHHHHHHHHhCCCCCCChhhHHHHHHH------HHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcc----
Q 002257 175 VHILNRLYTRFGDLKLQNPENRAFAQMF------QKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS---- 244 (946)
Q Consensus 175 ~~~l~~l~~~y~~~~~~~~~~~~f~~~f------~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~---- 244 (946)
.+.+.+++.+||.. ....|.+.+ ..+++..+++.++..... .+....++++...+++||.++++
T Consensus 313 ~~~l~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~-~~~~~~~~~v~~~~l~fw~~l~~~~~~ 386 (971)
T 2x1g_F 313 IVHIYMLFVSSVER-----HSTLLLSGITSADPELSILVHRIVQEILHCTDK-PGIYPVEESCSTMALAFWYMLQDEVFA 386 (971)
T ss_dssp HHHHHHHHHHHHHH-----THHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC-SSCTTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHhccCcccccHHHHHHHHHHHHHHcC-CCCCCcchhhhHHHHHHHHHHHHHHHh
Confidence 33344444444310 001111000 012233333333332211 11111357899999999988754
Q ss_pred ------CchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCccc
Q 002257 245 ------KNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKEN 318 (946)
Q Consensus 245 ------~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~ 318 (946)
.+..+..+++++..++..++.+...-+++|.+.| |++| + +++.+.|.++.+++..++..+++.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~--d~~e--~------~~f~~~R~~~~~~l~~~~~~~~~~~ 456 (971)
T 2x1g_F 387 MSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW--SSDD--L------ECFRCYRQDISDTFMYCYDVLNDYI 456 (971)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS--CHHH--H------HHHHHHHHHHHHHHHHHHTTCTTHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--CHhH--H------HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1334566788898888877755432222233333 5554 1 2456799999999999999998899
Q ss_pred HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC--CCccchhHHHHHH
Q 002257 319 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS--SPVGHLRAKAAWV 396 (946)
Q Consensus 319 l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~--~~~~~lr~ra~~~ 396 (946)
++.+++++.+.++++..++ .+|+.+||+++++|++++++.+.. ...++.++. +++.+. +++|.+|.++||+
T Consensus 457 l~~~~~~l~~~l~~~~~~~---~~w~~~eaal~~l~~iae~~~~~~--~~~l~~l~~--~l~~l~~~d~~~~vr~~a~~~ 529 (971)
T 2x1g_F 457 LEILAAMLDEAIADLQRHP---THWTKLEACIYSFQSVAEHFGGEE--KRQIPRLMR--VLAEIPYEKLNVKLLGTALET 529 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHTTTC--------CHHHHHHH--HHHHSCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHH--HHHhcCccccCHHHHHHHHHH
Confidence 9999999999988764333 489999999999999999987532 134556554 566666 4599999999999
Q ss_pred HHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh--hhhhh--
Q 002257 397 AGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--VENED-- 472 (946)
Q Consensus 397 l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~--~~~e~-- 472 (946)
+|+|+++....++++..+++.++++| + ++|+.+||.|+.+|++.. +..+.||++++++.|+.++++ .+.+.
T Consensus 530 l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~ 604 (971)
T 2x1g_F 530 MGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSV 604 (971)
T ss_dssp HHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999865455678999999999999 4 789999999999999874 677999999999999999987 33433
Q ss_pred -HHHHHHHHHHhhC-CcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCC---------
Q 002257 473 -LVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL--------- 541 (946)
Q Consensus 473 -l~~~L~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~--------- 541 (946)
++.++..++...+ ++..||+..++..+...+.++.+....+ ++.......+++++++++++++..
T Consensus 605 ~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~----~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~ 680 (971)
T 2x1g_F 605 RLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT----PAARIRTIFRLNMISTLFSSLNTDVDEQATDQP 680 (971)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C----HHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----hhhHHHHHHHHHHHHHHHhhcCCCcCccccccc
Confidence 5666666666554 7778899888888887777665421101 123345667889999999988542
Q ss_pred -hhHHHHHHhhHHHHHHHhcccc--hhhHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHH
Q 002257 542 -PHLFVQIEPTLLPIMRRMLTTD--GQEVFEEVLEIVSYMTFF-SPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDN 617 (946)
Q Consensus 542 -~~~~~~l~~~l~p~i~~~l~~~--~~~~~~~~l~ll~~l~~~-~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~ 617 (946)
++.+..+.+.++|++..+++.. ..++.+.++.+++.++.. .+.+.|.++.+++.+...+.+.. . ...+.++..
T Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~--~-~~~l~l~~~ 757 (971)
T 2x1g_F 681 IVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC--C-APTLEISKT 757 (971)
T ss_dssp ---CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C--C-HHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC--c-hHHHHHHHH
Confidence 3345667788999999988653 457899999999997754 36788899999999987776421 1 223444444
Q ss_pred HHhc-CcccccccCCCchHHHHHHHHHHHHcCC---CC--CCcccCchhhHHHHHHHHcccCc--hhc-hHHHHHHHHHH
Q 002257 618 YISR-GTAHFLTCKEPDYQQSLWSMVSSIMADK---NL--EDGDIEPAPKLIEVVFQNCKGQV--DHW-VEPYLRITVER 688 (946)
Q Consensus 618 ~i~~-~~~~~l~~~~~~~~~~i~~i~~~ll~~~---~~--~~~~~~~a~~ll~~il~~~~~~~--~~~-l~~il~~~~~~ 688 (946)
.+.. |.+.-....-.+.+..++..+-.++... .. ..+-....+.++..++.++|..+ .+. ++.++..++..
T Consensus 758 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~ 837 (971)
T 2x1g_F 758 AIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRG 837 (971)
T ss_dssp HHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHH
Confidence 4432 3221100000022222222222333221 01 11112456789999999999765 377 88889888888
Q ss_pred HHh
Q 002257 689 LRR 691 (946)
Q Consensus 689 L~~ 691 (946)
+..
T Consensus 838 l~~ 840 (971)
T 2x1g_F 838 MTL 840 (971)
T ss_dssp HTS
T ss_pred cCC
Confidence 764
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=7.3e-31 Score=333.14 Aligned_cols=659 Identities=12% Similarity=0.158 Sum_probs=413.2
Q ss_pred hhhhHHHHHhc---CChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcch------h--hHHHHHHHHHHHHHhcc-c
Q 002257 2 VRDHILVFVAQ---VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD------Q--QVYGALFVLRILSRKYE-F 69 (946)
Q Consensus 2 Ir~~Ll~~l~~---~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s------~--~~~~~L~~L~~i~k~~~-~ 69 (946)
||+.|++.+.+ .++.||++++.+|+.|+++|||++||++++.|++.+++ + ...++|.+|..+++... +
T Consensus 101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~ 180 (963)
T 2x19_B 101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTS 180 (963)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcc
Confidence 79999999975 47899999999999999999999999999999999986 4 56788999988886432 2
Q ss_pred CC-CcCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhh------------hhcCChhhHH
Q 002257 70 KS-DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIP------------KQLLDPNVFN 136 (946)
Q Consensus 70 ~~-~~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp------------~~~~~~~~l~ 136 (946)
+. .+.|..+...+...+|.++.++..+++....+ ..++..++|++...+..+.+ ..+.+.+...
T Consensus 181 ~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~---~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~ 257 (963)
T 2x19_B 181 RLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSP---SCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFD 257 (963)
T ss_dssp CC---------CCSGGGHHHHHHHHHHHHSCTTCC---HHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHH
Confidence 21 11122333333444666666666666543211 23677788888654332111 1122344567
Q ss_pred HHHHHHHHHhcCCCCCCCCCCChhhhhh-cc--------hhHH----HHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHH
Q 002257 137 AWMILFLNVLERPVPSEGEPADPEQRKS-WG--------WWKV----KKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQ 203 (946)
Q Consensus 137 ~w~~~~~~il~~~~~~~~~~~d~~~~~~-~~--------~~k~----k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~ 203 (946)
.|+..+..++..+.+.. -...... .+ +.+. ..|.++.+.+++.+||. .+. ..+.
T Consensus 258 ~a~~~l~~i~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~------~~~---~~l~ 324 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQR----YVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGE------NHS---RALL 324 (963)
T ss_dssp HHHHHHHHHHTCTTGGG----CHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH------HHH---HHHH
T ss_pred HHHHHHHHHHccccccc----CHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHH------HhH---HHHH
Confidence 78888888887532210 0000000 00 0000 01334444444444431 000 0111
Q ss_pred Hhh-HHHHHHHHHHHHHhhhC--Ccc-cCHHHHHHHHHHHHhhccC---------chhhhhchhhHHHHHHHHHhccccc
Q 002257 204 KNY-AGKILECHLNLLNRIRV--GGY-LPDRVTNLILQYLSNSISK---------NSMYNLLQPRLDVLLFEIVFPLMCF 270 (946)
Q Consensus 204 ~~~-~~~~l~~~~~~l~~~~~--~~~-~~d~~~~~~l~fl~~~~~~---------~~~~~~l~~~l~~li~~ii~p~l~l 270 (946)
... .+..+..+++.+-.... +.| .++++...+++||..+++. +..+..+++.+..++..++ +.|..
T Consensus 325 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll-~~~~~ 403 (963)
T 2x19_B 325 DQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLL-HKAQF 403 (963)
T ss_dssp HCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-HHHSC
T ss_pred cCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHcC
Confidence 000 01122333443332211 111 2467788999999988762 3455677889999987655 66665
Q ss_pred Chhh-HhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHH
Q 002257 271 NDND-QKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGA 349 (946)
Q Consensus 271 t~~d-~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaa 349 (946)
.+++ .+.|++|+. +++.+.|.++.++|..++...++.+++.+++++.+.++++.. ..+|+.+||+
T Consensus 404 p~~~~~~~~~~de~----------~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~----~~~w~~~eaa 469 (963)
T 2x19_B 404 PSDEEYGFWSSDEK----------EQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEE----PYSWQHTEAL 469 (963)
T ss_dssp CCHHHHHTSCHHHH----------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCC----SCCHHHHHHH
T ss_pred CCcccccCCChhHH----------HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCC----CCchHHHHHH
Confidence 4332 334443221 233456999999999999999888999999999999877622 1389999999
Q ss_pred HHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCch
Q 002257 350 LLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPV 429 (946)
Q Consensus 350 l~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V 429 (946)
++++|++++++.+.. ...+..++. +++.+.+++|.+|.++||++|+|+++....++.+..+++.+++.|++ ++|
T Consensus 470 l~al~~i~~~~~~~~--~~~l~~l~~--~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V 543 (963)
T 2x19_B 470 LYGFQSIAETIDVNY--SDVVPGLIG--LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PEL 543 (963)
T ss_dssp HHHHHHHTTSCCSSC--CSHHHHHHH--HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGG
T ss_pred HHHHHHHHhhcCchh--hHHHHHHHH--HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chH
Confidence 999999999986522 123444443 45566667999999999999999985434557899999999999976 789
Q ss_pred HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh--hhhh---hHHHHHHHHHHhhC-CcccccHHHHHHHHHHHH
Q 002257 430 RVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--VENE---DLVFTLETIVDKFG-EEMAPYALGLCQNLAAAF 503 (946)
Q Consensus 430 ~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~--~~~e---~l~~~L~~iv~~~~-~~i~p~~~~l~~~L~~~~ 503 (946)
+.+||.|+.++++. .+..+.||++++++.|..++++ .+.+ .++.++..++...+ ++..||...+++.+...+
T Consensus 544 ~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l 621 (963)
T 2x19_B 544 SVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQL 621 (963)
T ss_dssp HHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 4677999999999999999985 2333 35666777776665 778889999998888776
Q ss_pred HHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcC-------------------ChhHHHHHHhhHHHHHHHhcccc-
Q 002257 504 WRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-------------------LPHLFVQIEPTLLPIMRRMLTTD- 563 (946)
Q Consensus 504 ~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~-------------------~~~~~~~l~~~l~p~i~~~l~~~- 563 (946)
.++.+.. .++ +.......++++++.++++++. .+..+..+.+.++|++..+++..
T Consensus 622 ~~~~~~~-~~~----~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 696 (963)
T 2x19_B 622 EKLAEEI-PNP----SNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL 696 (963)
T ss_dssp HHHHSSC-SCH----HHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCC-CCH----HHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 6654321 111 3334456788999999999853 12345667888999998888653
Q ss_pred -hhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHh--cCcccccccCCCchHHHHH
Q 002257 564 -GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYIS--RGTAHFLTCKEPDYQQSLW 639 (946)
Q Consensus 564 -~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~--~~~~~~l~~~~~~~~~~i~ 639 (946)
..+..+.++.++..++... ..+.|.+..+++.++....+. ..+.++.++..++. ...+.+.. .-++.++.++
T Consensus 697 ~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---~~~~~l~l~~~li~~f~~~~~~~~-~~~~~l~~~~ 772 (963)
T 2x19_B 697 NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI---PQASALDLTRQLVHIFAHEPAHFP-PIEALFLLVT 772 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS---CCHHHHHHHHHHHHHHTTCTTTCH-HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC---CccHHHHHHHHHHHHhCCCcchHH-HHHHHHHHHH
Confidence 3467888899998887654 456666666666665544321 12345555666655 22211110 0001223333
Q ss_pred HHHHHHHc-CCCCCCcccCchhhHHHHHHHHcccCc--hhc-hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 002257 640 SMVSSIMA-DKNLEDGDIEPAPKLIEVVFQNCKGQV--DHW-VEPYLRITVERLRRAEKSYLKCLLVQVIADAL 709 (946)
Q Consensus 640 ~i~~~ll~-~~~~~~~~~~~a~~ll~~il~~~~~~~--~~~-l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~ 709 (946)
..+-.++. +.....+-....+.++..++.+++..+ .+. +..++..++..+.. .........+.++..++
T Consensus 773 ~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~l~~l~~l~ 845 (963)
T 2x19_B 773 SVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF-PEAPTVKASCGFFTELL 845 (963)
T ss_dssp HHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 32222332 111112224568899999999998754 355 77888877777754 23333333444444433
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.6e-30 Score=326.40 Aligned_cols=604 Identities=12% Similarity=0.209 Sum_probs=416.6
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCC-CCchhhHHHHHHhcchh----hHHHHHHHHHHHHHhcccCCCcCcc
Q 002257 2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLRILSRKYEFKSDEERT 76 (946)
Q Consensus 2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P-~~Wp~Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~~~~~~~~~ 76 (946)
||+.|+++|.++++.+|++++.+|+.|++++|| +.||+++|.|.+.++++ ..++++.++..+++.+... .+
T Consensus 96 ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~---~~- 171 (861)
T 2bpt_A 96 IKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQ---SQ- 171 (861)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTT---SS-
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChh---hh-
Confidence 789999999999999999999999999999999 59999999999999864 4579999999999986521 11
Q ss_pred hHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCC
Q 002257 77 PVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEP 156 (946)
Q Consensus 77 ~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~ 156 (946)
.+......++|.+ ...+.+.. ....++..+++++..++.. +...+.........++.+...++.
T Consensus 172 ~~~~~~~~ll~~l----~~~l~~~~---~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~-------- 235 (861)
T 2bpt_A 172 ALVSSSNNILIAI----VQGAQSTE---TSKAVRLAALNALADSLIF-IKNNMEREGERNYLMQVVCEATQA-------- 235 (861)
T ss_dssp TTGGGHHHHHHHH----HHHHSTTC---CCHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHH----HHhhcCCC---CCHHHHHHHHHHHHHHHHH-HHHHccChhHHHHHHHHHHHHhcC--------
Confidence 1112233334433 33333221 1356788999998876432 111111110111223333333211
Q ss_pred CChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHH-HHHHHHHHHHHhhhCCcccCHHHHHHH
Q 002257 157 ADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNLLNRIRVGGYLPDRVTNLI 235 (946)
Q Consensus 157 ~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~-~~l~~~~~~l~~~~~~~~~~d~~~~~~ 235 (946)
.+ +++|+++++++.++..+|+. ++.++++ .+++.++..+. ...+.+...+
T Consensus 236 ~~---------~~~r~~a~~~l~~l~~~~~~--------------~~~~~l~~~l~~~~~~~~~------~~~~~vr~~a 286 (861)
T 2bpt_A 236 ED---------IEVQAAAFGCLCKIMSKYYT--------------FMKPYMEQALYALTIATMK------SPNDKVASMT 286 (861)
T ss_dssp SC---------HHHHHHHHHHHHHHHHHHGG--------------GCHHHHHHTHHHHHHHHTT------CSSHHHHHHH
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHc------CCcHHHHHHH
Confidence 11 67889999999999998742 1233444 55554444332 1347899999
Q ss_pred HHHHHhhccCchhh---------------hhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHH
Q 002257 236 LQYLSNSISKNSMY---------------NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 300 (946)
Q Consensus 236 l~fl~~~~~~~~~~---------------~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R 300 (946)
++||..+++..... +.+++.+..++..++ ..| ++.+. |+ +++.+++|
T Consensus 287 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll-~~l--~~~~~-----d~----------~d~~~~~r 348 (861)
T 2bpt_A 287 VEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL-NLL--TRQNE-----DP----------EDDDWNVS 348 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH-HHT--TCCCC-----C-----------CCCCCHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHH-HHH--Hhccc-----cc----------ccccCcHH
Confidence 99999987653211 123344455555433 333 22221 10 12447899
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhccc
Q 002257 301 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP 380 (946)
Q Consensus 301 ~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p 380 (946)
.+|..++..++..+++.+++.+++++.+.+++ .+|+.|++|+.++|.+++++... .+...++. +...+++
T Consensus 349 ~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~~-~~~~~l~~-il~~l~~ 418 (861)
T 2bpt_A 349 MSAGACLQLFAQNCGNHILEPVLEFVEQNITA--------DNWRNREAAVMAFGSIMDGPDKV-QRTYYVHQ-ALPSILN 418 (861)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCHH-HHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHccHhHHHHHHHHHHHHcCC--------CChhHHHHHHHHHHHHHcCCCHH-HHHHHHHH-HHHHHHH
Confidence 99999999999999988999999999888764 27999999999999999775310 12223333 3356666
Q ss_pred CCCCCccchhHHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--cccccccchH
Q 002257 381 EFSSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DLNEIRPILP 455 (946)
Q Consensus 381 ~l~~~~~~lr~ra~~~l~~~~~~~---f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~--~~~~l~p~l~ 455 (946)
.+.++++.+|.+++|++|+++... +.+.+.+..+++.+++.|.|+ ..||..||.|+..+++... .++.+.||++
T Consensus 419 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~ 497 (861)
T 2bpt_A 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYP 497 (861)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 778899999999999999998632 223467899999999999886 7799999999999998753 2477899999
Q ss_pred HHHHHHHHHHhhhhh-----hhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhc--cCCCCCCChhhHHHHHHH
Q 002257 456 QLLDEFFKLMNEVEN-----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTA--EADEDADDPGALAAVGCL 528 (946)
Q Consensus 456 ~il~~Ll~ll~~~~~-----e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~--~~d~~~~~~~~~~~~~~l 528 (946)
.+++.|+.+++..+. .....++..++...++.+.||...+++.+...+.+..... ...+.+.+........++
T Consensus 498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence 999999999985442 2356788888998888888999888887776655432100 000000001223445788
Q ss_pred HHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchh-hHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhHhh
Q 002257 529 RAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAID 606 (946)
Q Consensus 529 ~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~-~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~~~~~ 606 (946)
+++..+++.++.. +..+.+.++|.+..+++.... ...+.++..++.++... ..+.|.+..++|.+.+.+......
T Consensus 578 ~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 578 TVLAAVIRKSPSS---VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHHCGGG---TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHhhhh---hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHH
Confidence 8999999987642 233445678888787776655 67888999999888654 456777888999988887532233
Q ss_pred hHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHH
Q 002257 607 FFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITV 686 (946)
Q Consensus 607 ~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~ 686 (946)
.....+.++........+.+. +|+..++..+.+.+.+++.+...+..++..+..++..+++.+.+|++.++..++
T Consensus 655 vr~~a~~~l~~l~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~ 729 (861)
T 2bpt_A 655 VSITAVGFIADISNSLEEDFR-----RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729 (861)
T ss_dssp HHHHHHHHHHHHHHHTGGGGH-----HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhcc-----chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334455566666555444454 688888888877886553334456678999999999999999999999999998
Q ss_pred HHHHh
Q 002257 687 ERLRR 691 (946)
Q Consensus 687 ~~L~~ 691 (946)
..+..
T Consensus 730 ~~~~~ 734 (861)
T 2bpt_A 730 AAQNT 734 (861)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 88763
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=1.2e-27 Score=300.65 Aligned_cols=600 Identities=13% Similarity=0.177 Sum_probs=407.6
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCC-CCchhhHHHHHHhcchh-----hHHHHHHHHHHHHHhcccCCCcCc
Q 002257 2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-----QVYGALFVLRILSRKYEFKSDEER 75 (946)
Q Consensus 2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P-~~Wp~Ll~~l~~~l~s~-----~~~~~L~~L~~i~k~~~~~~~~~~ 75 (946)
||+.|+++|.+++..+ ++++.+++.|+++++| ++||+++|.+.+.++++ ...++|.+|..+++.+.
T Consensus 91 ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~------- 162 (876)
T 1qgr_A 91 VKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID------- 162 (876)
T ss_dssp HHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-------
T ss_pred HHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-------
Confidence 7888999998888889 9999999999999999 99999999999999754 35799999999998753
Q ss_pred chHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCC
Q 002257 76 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGE 155 (946)
Q Consensus 76 ~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~ 155 (946)
...+...++.++..+.+.+.++. ....++..+++++..+... ++..+.........++.+...++.
T Consensus 163 ---~~~~~~~~~~ll~~l~~~l~~~~---~~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~il~~l~~~~~~------- 228 (876)
T 1qgr_A 163 ---PEQLQDKSNEILTAIIQGMRKEE---PSNNVKLAATNALLNSLEF-TKANFDKESERHFIMQVVCEATQC------- 228 (876)
T ss_dssp ---HHHHGGGHHHHHHHHHHHHSTTC---SCHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHHHHHHTTC-------
T ss_pred ---HhhHHhHHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHcCC-------
Confidence 01123334444444444444321 1346688899998876532 232221111011233333333211
Q ss_pred CCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHH-HHHHHHHHHHHhhhCCcccCHHHHHH
Q 002257 156 PADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNLLNRIRVGGYLPDRVTNL 234 (946)
Q Consensus 156 ~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~-~~l~~~~~~l~~~~~~~~~~d~~~~~ 234 (946)
.+ .++|..+++++..+..+|+. ++.++++ .+++.++..+. ...+.+...
T Consensus 229 -~~---------~~vr~~a~~~l~~l~~~~~~--------------~~~~~~~~~l~~~~~~~~~------~~~~~v~~~ 278 (876)
T 1qgr_A 229 -PD---------TRVRVAALQNLVKIMSLYYQ--------------YMETYMGPALFAITIEAMK------SDIDEVALQ 278 (876)
T ss_dssp -SS---------HHHHHHHHHHHHHHHHHSGG--------------GCHHHHTTTHHHHHHHHHT------CSSHHHHHH
T ss_pred -CC---------HHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHhc------CCchHHHHH
Confidence 11 46788999999999988642 1234455 56666555442 235789999
Q ss_pred HHHHHHhhccCch-------------------hhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhcccccc
Q 002257 235 ILQYLSNSISKNS-------------------MYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIED 295 (946)
Q Consensus 235 ~l~fl~~~~~~~~-------------------~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d 295 (946)
+++||..+++... .+...++++..++..++ ..+.-.++ |+ + ++
T Consensus 279 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll-~~l~~~~~-------d~--------~--~~ 340 (876)
T 1qgr_A 279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT-QTLTKQDE-------ND--------D--DD 340 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHH-HHTTCCCS-------SC--------C--TT
T ss_pred HHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHH-HHhhcccc-------cc--------c--cc
Confidence 9999998875421 12233445555555333 44432111 11 1 24
Q ss_pred ccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHH
Q 002257 296 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 375 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~ 375 (946)
.|++|.+|..++..++...++.+++.+++++.+.+++ .+|+.|++|+.++|.++.++... .+...+.. +.
T Consensus 341 ~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~~-~~~~~~~~-~l 410 (876)
T 1qgr_A 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN--------PDWRYRDAAVMAFGCILEGPEPS-QLKPLVIQ-AM 410 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCHH-HHHHHHHH-HH
T ss_pred ccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC--------CChHHHHHHHHHHHHHHcCCCHH-HHHHHHHH-HH
Confidence 5899999999999999999888899999988887764 28999999999999999875410 01112223 33
Q ss_pred HhcccCCCCCccchhHHHHHHHHhhhccccC---ChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-------
Q 002257 376 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------- 445 (946)
Q Consensus 376 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~---~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~------- 445 (946)
+.+++.++++++.+|.+|||++|+|+...-. ....+..+++.+++.|.++ ..||..|+.||.+++....
T Consensus 411 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~ 489 (876)
T 1qgr_A 411 PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVAD 489 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccc
Confidence 4556667889999999999999999874211 2357899999999999885 7799999999999998742
Q ss_pred -----cccccccchHHHHHHHHHHHhhhhh------hhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCC
Q 002257 446 -----DLNEIRPILPQLLDEFFKLMNEVEN------EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADE 514 (946)
Q Consensus 446 -----~~~~l~p~l~~il~~Ll~ll~~~~~------e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~ 514 (946)
..+.+.||++.+++.|+.++...+. .....++..++...+.+..||...+++.+...+........ ..
T Consensus 490 ~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~ 568 (876)
T 1qgr_A 490 DQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMES-HI 568 (876)
T ss_dssp SCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTT-SC
T ss_pred ccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence 2356899999999999999986532 23567888889988888888888888877765554432110 00
Q ss_pred CCCChh---hHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccch--hhHHHHHHHHHHHHHhcC-CCCCHH
Q 002257 515 DADDPG---ALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG--QEVFEEVLEIVSYMTFFS-PTISLE 588 (946)
Q Consensus 515 ~~~~~~---~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~--~~~~~~~l~ll~~l~~~~-~~i~p~ 588 (946)
..++++ +.....++.++..++..++. ..+..+.+.++|.+..++++.. ....+.++.+++.++... ..+.|.
T Consensus 569 ~~~~d~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 646 (876)
T 1qgr_A 569 QSTSDRIQFNDLQSLLCATLQNVLRKVQH--QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhCh--hhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHH
Confidence 011122 22234567777777776541 2344556778888888887653 356788999999988754 457777
Q ss_pred HHHHHHHHHHHHhhh-HhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHH
Q 002257 589 MWSLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVF 667 (946)
Q Consensus 589 l~~l~~~l~~~~~~~-~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il 667 (946)
+..++|.+...+... ..+.....+.++...+......+. +++..++..+.+.+.+...+...+..++..++.++
T Consensus 647 ~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 647 MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-----PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIA 721 (876)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHH
Confidence 888889888887642 233334455556555544334444 67888888888888653333344567889999999
Q ss_pred HHcccCchhchHHHHHHHHHHHH
Q 002257 668 QNCKGQVDHWVEPYLRITVERLR 690 (946)
Q Consensus 668 ~~~~~~~~~~l~~il~~~~~~L~ 690 (946)
..+|+.+.+|++.++..+...+.
T Consensus 722 ~~~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 722 LAIGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHT
T ss_pred HHhchhHHHHHHHHHHHHHHHHh
Confidence 99998899999999998877764
No 8
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.95 E-value=3.9e-24 Score=266.29 Aligned_cols=665 Identities=13% Similarity=0.119 Sum_probs=379.8
Q ss_pred hhhhHHHHHhc-----CChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh-h---HHHHHHHHHHHHHhcc-cC-
Q 002257 2 VRDHILVFVAQ-----VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q---VYGALFVLRILSRKYE-FK- 70 (946)
Q Consensus 2 Ir~~Ll~~l~~-----~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~-~---~~~~L~~L~~i~k~~~-~~- 70 (946)
||+.|++.+.. .++.||++++.+++.|+.++||..||++++++++.++++ . +...|++|..|.+... .+
T Consensus 86 lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 86 IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 78999999864 467899999999999999999999999999999999875 2 3566777776666643 11
Q ss_pred --CCc--Cc-chHHHHH-----HHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhh-hcCChhhHHHHH
Q 002257 71 --SDE--ER-TPVYRIV-----EETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QLLDPNVFNAWM 139 (946)
Q Consensus 71 --~~~--~~-~~l~~i~-----~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~-~~~~~~~l~~w~ 139 (946)
..+ .| ..+.+.+ +.+++..+.++.+..+.. ...++..+++++.+.+.- +|. .+.+ ..++
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~-----~~~l~~~~L~~l~s~i~w-i~~~~i~~----~~ll 235 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK-----NYGTVGLCLQVYAQWVSW-ININLIVN----EPCM 235 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTTT-SCHHHHHC----HHHH
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHhh-cCHHhhhc----chHH
Confidence 110 11 1223332 333555555555543211 235677888888776542 232 2211 3555
Q ss_pred HHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCC-----------------C----CChh-hHH
Q 002257 140 ILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLK-----------------L----QNPE-NRA 197 (946)
Q Consensus 140 ~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~-----------------~----~~~~-~~~ 197 (946)
+.+...++. ..++..++++|..++.|-..|. . -+.+ .+.
T Consensus 236 ~~l~~~L~~-------------------~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~ 296 (980)
T 3ibv_A 236 NLLYSFLQI-------------------EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEH 296 (980)
T ss_dssp HHHHHHTTS-------------------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHH
T ss_pred HHHHHHcCC-------------------hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHH
Confidence 555555532 1223444444444444321100 0 0111 122
Q ss_pred HHHHHHH---h-----------------hHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhccCch-------hhh
Q 002257 198 FAQMFQK---N-----------------YAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNS-------MYN 250 (946)
Q Consensus 198 f~~~f~~---~-----------------~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~-------~~~ 250 (946)
+++.+.. . -+...+..++..+-.+... .++.+...++.||+..+..-+ ...
T Consensus 297 la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~--~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~ 374 (980)
T 3ibv_A 297 VAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD--DYDETSTAVFPFLSDLLVSLRKESSSKELSA 374 (980)
T ss_dssp HHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC--SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCH
T ss_pred HHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHHHHHHhccccccccH
Confidence 2222210 0 0001122222222111111 246888889999988764311 234
Q ss_pred hchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhh
Q 002257 251 LLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIF 330 (946)
Q Consensus 251 ~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l 330 (946)
.+++++..++..++ .-|.+.+++ .|.+|. +.|+.+++...|.....+++.++.-.++.++..+..++...+
T Consensus 375 ~~~~~l~~Ll~~li-~k~~yp~d~--~~~~~~------d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l 445 (980)
T 3ibv_A 375 SLKEFLKSLLEAII-KKMKYDESQ--EWDDDP------DSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL 445 (980)
T ss_dssp HHHHHHHHHHHHHH-HTTSCCTTC--CCCCCS------SSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHccCCCcc--cccccc------chhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 56788889998655 788887764 365421 001112344478877777777766666767774444544444
Q ss_pred cccCCCCcCCCCchhHhHHHHHHHHHHhhhhc-------CCcchHHHHHHHHHhcccCC-CCCccchhHHHHHHHHhhhc
Q 002257 331 KRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-------TEPYKSELERMLVQHVFPEF-SSPVGHLRAKAAWVAGQYAH 402 (946)
Q Consensus 331 ~~~~~~~~~~~~~~~keaal~alg~ia~~l~~-------~~~~~~~l~~~l~~~v~p~l-~~~~~~lr~ra~~~l~~~~~ 402 (946)
++...+. ...+|+.+||++++++++++++.. .++..+.+.+++.+.+-... +.+||.+|..+||++|||++
T Consensus 446 ~~~l~~~-~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~ 524 (980)
T 3ibv_A 446 STAATLS-PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS 524 (980)
T ss_dssp HHHTTSC-HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG
T ss_pred HHHhccc-CCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4332211 113799999999999999999763 11233345565554433222 25899999999999999998
Q ss_pred cccCChhHHHHHHHHHHh--cCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh-h---hh------
Q 002257 403 INFSDQNNFRKALHSVVS--GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE-V---EN------ 470 (946)
Q Consensus 403 ~~f~~~~~~~~~~~~l~~--~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~-~---~~------ 470 (946)
+.-..++.+..+++.++. .+.+++..||..||.|+.+|++.+ +..+.||++++++.+-.++.. . +.
T Consensus 525 ~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~--~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~ 602 (980)
T 3ibv_A 525 FFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI--KKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVP 602 (980)
T ss_dssp GGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT--TTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSC
T ss_pred HHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh--hHHhhhHHHHHHHHHHHhhcCcCCCCCccccccc
Confidence 643456899999999999 898999999999999999999994 678899999999999888762 1 10
Q ss_pred --------------hhHHHHHHHHHHhhCC---cccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHH
Q 002257 471 --------------EDLVFTLETIVDKFGE---EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 533 (946)
Q Consensus 471 --------------e~l~~~L~~iv~~~~~---~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ 533 (946)
-.+++++..++...+. +...|...++..+...+.+..+....++ ++.. ..+.++.++++
T Consensus 603 ~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~---~~~~-~i~~~i~al~~ 678 (980)
T 3ibv_A 603 TLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL---ENII-SVYCSLMAIGN 678 (980)
T ss_dssp CHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-----CHHH-HHHHHHHHHHH
T ss_pred chhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc---cHHH-HHHHHHHHHHH
Confidence 1167788888877642 3344666666666665655554322111 1222 33344555566
Q ss_pred HHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhH--hhhHhhh
Q 002257 534 ILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWA--IDFFPNI 611 (946)
Q Consensus 534 ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~--~~~l~~~ 611 (946)
+.+.....+. . ..++.+.+++.++.++..+..|. ....+.+
T Consensus 679 lakgf~~~~~-------------------~------------------~~p~~~~f~~~~~~il~~l~~~~~~~~irea~ 721 (980)
T 3ibv_A 679 FAKGFPARGS-------------------E------------------EVAWLASFNKASDEIFLILDRMGFNEDIRGAV 721 (980)
T ss_dssp HHHTSCSCC--------------------C------------------CCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHH
T ss_pred HhccCCcccC-------------------C------------------CCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 5555432110 0 00122233344444443333221 2223333
Q ss_pred HHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHH---
Q 002257 612 LVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVER--- 688 (946)
Q Consensus 612 ~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~--- 688 (946)
..+++..+..=...++ +++..++..+-..+ +..+......+++.++..++..+.+.+..++..++++
T Consensus 722 ~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~-----~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~ 791 (980)
T 3ibv_A 722 RFTSGRIINVVGPDML-----PKVPQLISILLNSI-----DMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFS 791 (980)
T ss_dssp HHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHC-----CTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHhHH-----HHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433222244 55665555433222 1222345678888899998877655555555555544
Q ss_pred -HHhh--------hhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHHHH
Q 002257 689 -LRRA--------EKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCC 759 (946)
Q Consensus 689 -L~~~--------~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~ 759 (946)
|... ....++..++.++..++..+-..++-.-.+.+.++.++...+.... .+....-.|+++
T Consensus 792 ~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~---------~~~d~~~~K~a~ 862 (980)
T 3ibv_A 792 SLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFAN---------LVGEPATQKSSI 862 (980)
T ss_dssp HTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC--------------CHHHHHHH
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhc---------cCCChHHHHHHH
Confidence 4331 1233555666555555544422222111112456677777776655 667888999999
Q ss_pred HHHHHHhccc
Q 002257 760 LGLTSLLALT 769 (946)
Q Consensus 760 lal~~Ll~~~ 769 (946)
.-|+++...-
T Consensus 863 ~~l~~~v~~~ 872 (980)
T 3ibv_A 863 ALVSKMVSLW 872 (980)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999999763
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.93 E-value=4.6e-22 Score=247.68 Aligned_cols=656 Identities=12% Similarity=0.153 Sum_probs=358.2
Q ss_pred hhhhHHHHHhc---C------ChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--hHHHHHHHHHHHHHhc-cc
Q 002257 2 VRDHILVFVAQ---V------PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKY-EF 69 (946)
Q Consensus 2 Ir~~Ll~~l~~---~------~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i~k~~-~~ 69 (946)
||+.|++.+.. . ++.|+++++.+++.|+++|||+.||++++++++.++++ ....+|.+|..+.+.. ++
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~ 171 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDF 171 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 78999998853 1 46688889999999999999999999999999999877 5678888888887762 22
Q ss_pred CC---C-cCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhh-hc--------------C
Q 002257 70 KS---D-EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QL--------------L 130 (946)
Q Consensus 70 ~~---~-~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~-~~--------------~ 130 (946)
.. . ..+..+...+..-+|.++.++...++... ..++...+++++.+.+.- +|- .+ .
T Consensus 172 ~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~----~~~l~~~~L~~l~s~l~W-I~i~~i~~~~ll~~l~~~~L~ 246 (1023)
T 4hat_C 172 SAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA----SSSLIVATLESLLRYLHW-IPYRYIYETNILELLSTKFMT 246 (1023)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTT-SCTHHHHSSSHHHHHHTHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHh-CCHHHhcchhHHHHHHHHHcC
Confidence 21 1 12346767777778888888888775432 234466777777664321 111 11 1
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHH-HH-------HHHHhCCCCCCChhh-HHHHHH
Q 002257 131 DPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHIL-NR-------LYTRFGDLKLQNPEN-RAFAQM 201 (946)
Q Consensus 131 ~~~~l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l-~~-------l~~~y~~~~~~~~~~-~~f~~~ 201 (946)
+++....-++.+..++....| .+...-. ...+.+=..++..+ .. +...|.....-+.+. +.++..
T Consensus 247 ~~~~r~~A~ecL~eIv~~~~~-----~~~~~~~-~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l 320 (1023)
T 4hat_C 247 SPDTRAITLKCLTEVSNLKIP-----QDNDLIK-RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMF 320 (1023)
T ss_dssp SHHHHHHHHHHHHHHHTSCCC-----SSCHHHH-HHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccccC-----CchHHHH-HHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHH
Confidence 111122222333444432211 0100000 00000000111111 00 001110000000110 111111
Q ss_pred H---HHhhH---------HHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhccCc----hhhhhchhhHHHHHHHHHh
Q 002257 202 F---QKNYA---------GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKN----SMYNLLQPRLDVLLFEIVF 265 (946)
Q Consensus 202 f---~~~~~---------~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~----~~~~~l~~~l~~li~~ii~ 265 (946)
| ...|. ..++...+..+-... ......+...+++||....+.- ..+..++|.+..++..++
T Consensus 321 ~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~--~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli- 397 (1023)
T 4hat_C 321 LTTYLARNRALLESDESLRELLLNAHQYLIQLS--KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVII- 397 (1023)
T ss_dssp HHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH-
Confidence 1 11111 122222222322222 1224577789999998876521 123457888888888665
Q ss_pred cccccChhhHhhhhcChHHHHHhhcc---ccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCC
Q 002257 266 PLMCFNDNDQKLWDEDPHEYVRKGYD---IIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKP 342 (946)
Q Consensus 266 p~l~lt~~d~e~we~Dp~efi~~~~d---~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~ 342 (946)
..|.+.++++ .+++|-.+++|.... ..+.+.+-| ++|..++.-.+..+++.+++.+.+.+.. +. .+
T Consensus 398 ~km~~P~e~~-ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~----~~--~~ 466 (1023)
T 4hat_C 398 ENMVRPEEVL-VVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDG----SE--WS 466 (1023)
T ss_dssp HSCCCCTTCC-EEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSS----TT--CC
T ss_pred HhcCCCcccc-cCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHhcC----CC--CC
Confidence 7888877432 233333232222211 111222334 7777777766666666666666555432 11 37
Q ss_pred chhHhHHHHHHHHHHhhhhcC--CcchHHHHHHHHHhcccCCC-----CCccchhHHHHHHHHhhhccccCChhHHHHHH
Q 002257 343 YRQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEFS-----SPVGHLRAKAAWVAGQYAHINFSDQNNFRKAL 415 (946)
Q Consensus 343 ~~~keaal~alg~ia~~l~~~--~~~~~~l~~~l~~~v~p~l~-----~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~ 415 (946)
|+.+||+++++|++++++.+. +++...+-+ .++.... ++.+.+|..+||++|+|+++.-..++.+..++
T Consensus 467 W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~----~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl 542 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIK----DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVI 542 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH----HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHH----HHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999987542 122222222 2222222 35677888999999999986444678999999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcc------cccccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhCC
Q 002257 416 HSVVSGLRDPELPVRVDSVFALRSFVEACR------DLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGE 486 (946)
Q Consensus 416 ~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~------~~~~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~~ 486 (946)
+.++..|.++++.|+..||.|+.++++.+. ......||++++++.+.......+.+. +..++..++...+.
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 999999988888899999999999999863 123447999999999999987766555 45666666666653
Q ss_pred c--ccccHHHHHHHHHHHHHHHHhhccCCCCC--CChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHh---
Q 002257 487 E--MAPYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRM--- 559 (946)
Q Consensus 487 ~--i~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~--- 559 (946)
. ...+...+++.+...+.++.+....||+. +.+.......++++++.+..+++. ...+.+. .++|.+..+
T Consensus 623 ~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~--~f~~~~~-~i~~~~l~~y~~ 699 (1023)
T 4hat_C 623 VAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA--DFYPQLG-HIYYNMLQLYRA 699 (1023)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG--GGHHHHH-HHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcH--HHHHHHH-HHHHHHHHHHHH
Confidence 2 22355555665565555555433334421 112222234567888888888753 1222221 222222211
Q ss_pred --------cccchh------------hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhH-----hhhHHH
Q 002257 560 --------LTTDGQ------------EVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFF-----PNILVP 614 (946)
Q Consensus 560 --------l~~~~~------------~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l-----~~~~~~ 614 (946)
...++. -.-.+++.++...+..+.......-.+.|.++..+..+-..+. +.++.+
T Consensus 700 ~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l 779 (1023)
T 4hat_C 700 VSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNC 779 (1023)
T ss_dssp HHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHH
Confidence 111110 2234567777777765533222233566777766553211111 223333
Q ss_pred HHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCc-c-cCchhhHHHHHHHHcccCc----hhchHHHHHHHHHH
Q 002257 615 LDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG-D-IEPAPKLIEVVFQNCKGQV----DHWVEPYLRITVER 688 (946)
Q Consensus 615 L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~-~-~~~a~~ll~~il~~~~~~~----~~~l~~il~~~~~~ 688 (946)
....+.+-.+.+. ..-+..++.+++---.+++. +..+. + +..-++|+..+..+++..+ .+.+..++..++-.
T Consensus 780 ~s~iv~~~~~~~~-~~~~~il~~vf~~Tl~mi~~-~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a 857 (1023)
T 4hat_C 780 MTTVVEKVGHMIP-QGVILILQSVFECTLDMINK-DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWA 857 (1023)
T ss_dssp HHHHHHHHGGGCH-HHHHHHHHHHHHHHHHHHSS-CSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhc-ccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHH
Confidence 3333433222222 00012333333333445543 22222 2 3456899999999998643 23555666666555
Q ss_pred HHh
Q 002257 689 LRR 691 (946)
Q Consensus 689 L~~ 691 (946)
+..
T Consensus 858 ~~h 860 (1023)
T 4hat_C 858 FKH 860 (1023)
T ss_dssp HTC
T ss_pred cCC
Confidence 554
No 10
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.90 E-value=1.4e-19 Score=223.92 Aligned_cols=656 Identities=11% Similarity=0.158 Sum_probs=350.9
Q ss_pred hhhhHHHHHhc---------CChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--hHHHHHHHHHHHHHh-ccc
Q 002257 2 VRDHILVFVAQ---------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRK-YEF 69 (946)
Q Consensus 2 Ir~~Ll~~l~~---------~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i~k~-~~~ 69 (946)
||+.|++.+.. .++.++++++.+++.|++++||+.||++++++++.++++ ....+|.+|..+.+. +.+
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~ 183 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDF 183 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 78999998853 246789999999999999999999999999999999766 677899999999987 333
Q ss_pred C---CC-cCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhh-hhhhhcCCh------------
Q 002257 70 K---SD-EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL-EIPKQLLDP------------ 132 (946)
Q Consensus 70 ~---~~-~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~-~lp~~~~~~------------ 132 (946)
+ .. ..+..+...+...+|.++.++...++... ...+...+++++..++.- .+ ..+.+.
T Consensus 184 ~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~----~~~lv~~~L~~L~~~~sWI~i-~~i~~~~ll~~L~~~~L~ 258 (1073)
T 3gjx_A 184 SSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ----NAPLVHATLETLLRFLNWIPL-GYIFETKLISTLIYKFLN 258 (1073)
T ss_dssp HHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHHHTSS
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHHHHHhcCH-HHhccchHHHHHHHHhcC
Confidence 1 11 12346777788889999999888776432 234455556665544321 11 111111
Q ss_pred --hhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHH-------HHHhCCCCCCChh----hHHHH
Q 002257 133 --NVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRL-------YTRFGDLKLQNPE----NRAFA 199 (946)
Q Consensus 133 --~~l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l-------~~~y~~~~~~~~~----~~~f~ 199 (946)
+....=++.+..++....+ +-++. ..++-..++..+..+ ...|.....-+.+ +..|.
T Consensus 259 ~~~~r~aA~dcL~eIv~k~~~------~~~~~----~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f 328 (1073)
T 3gjx_A 259 VPMFRNVSLKCLTEIAGVSVS------QYEEQ----FETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFL 328 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHSCSG------GGHHH----HHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcccc------chHHH----HHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHH
Confidence 1111112222233322110 00000 001111111111111 0111110000001 11111
Q ss_pred HHHHHhhHHHH---------HHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhccC-----------------------ch
Q 002257 200 QMFQKNYAGKI---------LECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISK-----------------------NS 247 (946)
Q Consensus 200 ~~f~~~~~~~~---------l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~-----------------------~~ 247 (946)
..|...|..-+ +...++.+-..+ ......+...+++||....+. +.
T Consensus 329 ~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s--~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~ 406 (1073)
T 3gjx_A 329 CTFLKEHGQLLEKRLNLREALMEALHYMLLVS--EVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPP 406 (1073)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCH
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 12222232211 111111111111 112457888899999765431 01
Q ss_pred hhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 002257 248 MYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIV 327 (946)
Q Consensus 248 ~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~ 327 (946)
.+..++|.+..+...+| ..|...++..- =++|..|.+|+...+. +.-+.+.+-.+++..++.-.+..+...+++.+.
T Consensus 407 ~~~~y~~i~~~L~~vlI-~~m~~P~ev~i-~e~e~ge~~re~~~d~-~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~ 483 (1073)
T 3gjx_A 407 RRQLYLTVLSKVRLLMV-SRMAKPEEVLV-VENDQGEVVREFMKDT-DSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQ 483 (1073)
T ss_dssp HHHTTHHHHHHHHHHHH-HTCCCSCCEEE-EECSSSCEEEEECSSC-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HhcCCCccccc-cCcccchHHHHHHhhc-chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22345666777776554 77776654321 1334444443322111 223455666667666665445556655555554
Q ss_pred HhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc--CCcchHHHHHHHHHhcccCCCC-----CccchhHHHHHHHHhh
Q 002257 328 GIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFSS-----PVGHLRAKAAWVAGQY 400 (946)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~--~~~~~~~l~~~l~~~v~p~l~~-----~~~~lr~ra~~~l~~~ 400 (946)
+.+.. + .-+|...||+++++|++|..+.. .+++...+- +.+++.... ..+.+++.+||++|||
T Consensus 484 ~~~~~----~--~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi----~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 484 NQVNG----T--EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVI----KDLLGLCEQKRGKDNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHTS----C--CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH----HHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHhcC----C--CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHH----HHHhcccccccccchhHHHHHHHHHHHhhh
Confidence 43322 1 12699999999999999965542 112222222 223222211 2467888899999999
Q ss_pred hccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc------ccccccchHHHHHHHHHHHhhhhhhh--
Q 002257 401 AHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD------LNEIRPILPQLLDEFFKLMNEVENED-- 472 (946)
Q Consensus 401 ~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~------~~~l~p~l~~il~~Ll~ll~~~~~e~-- 472 (946)
+++.-..++.+..++..++..+.+++..|+..||.|+..+++.+.. .....||+.+|++.+-......+.+.
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~ 633 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVH 633 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHH
Confidence 9864456789999999999999999999999999999999999741 12346899999999999888876665
Q ss_pred -HHHHHHHHHHhhCCcc--cccHHHHHHHHHHHHHHHHhhccCCCCC--CChhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 002257 473 -LVFTLETIVDKFGEEM--APYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSRLPHLFVQ 547 (946)
Q Consensus 473 -l~~~L~~iv~~~~~~i--~p~~~~l~~~L~~~~~~~~~~~~~d~~~--~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~ 547 (946)
+..++..++...+.+. ..+...+++.+...|.++..+...+++. +.+.......++++...+..+++. ...+.
T Consensus 634 ~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~--~f~~~ 711 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGH--PFVIQ 711 (1073)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCG--GGHHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcch--hHHHH
Confidence 4566666777766543 3345555555555555555432222211 112112233466766667777653 12222
Q ss_pred HHh---hHHHHHH---Hhc----ccch------------hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHh
Q 002257 548 IEP---TLLPIMR---RML----TTDG------------QEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAI 605 (946)
Q Consensus 548 l~~---~l~p~i~---~~l----~~~~------------~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~ 605 (946)
+.. .++.+.. ..+ ..++ --.-.+++.++...+..+.......-.+.|+++..+..+-.
T Consensus 712 ~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~ 791 (1073)
T 3gjx_A 712 LGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQ 791 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHh
Confidence 211 1111111 111 1100 01345667777777765432222233666777776543211
Q ss_pred hhH-----hhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCc-c-cCchhhHHHHHHHHcccCch---
Q 002257 606 DFF-----PNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG-D-IEPAPKLIEVVFQNCKGQVD--- 675 (946)
Q Consensus 606 ~~l-----~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~-~-~~~a~~ll~~il~~~~~~~~--- 675 (946)
.+. +.++.+....+.+-...+. ..-+..++.+++---.+++. ++.+. + +..-++|+..+..+|...+-
T Consensus 792 ~~~p~~r~~evL~l~s~iv~k~~~~~~-~~~~~il~~vf~~Tl~mi~~-~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~ 869 (1073)
T 3gjx_A 792 RNVPAAREPEVLSTMAIIVNKLGGHIT-AEIPQIFDAVFECTLNMINK-DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIP 869 (1073)
T ss_dssp HSCGGGCCTHHHHHHHHHHHHHGGGTG-GGHHHHHHHHHHHHHHHHSS-CSSSCHHHHHHHHHHHHHHHHHCGGGTTTSC
T ss_pred cCCcccccHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHhC-CcccCcHHHHHHHHHHHHHHHHHhHHHHcCC
Confidence 111 2334444444443222222 01113344444444455643 23222 2 34568999999999886432
Q ss_pred -hchHHHHHHHHHHHHh
Q 002257 676 -HWVEPYLRITVERLRR 691 (946)
Q Consensus 676 -~~l~~il~~~~~~L~~ 691 (946)
+.+..++..++-.+..
T Consensus 870 ~~~~~~~i~~i~wa~kh 886 (1073)
T 3gjx_A 870 PAQFKLVLDSIIWAFKH 886 (1073)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 3445555555555543
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.85 E-value=4.8e-20 Score=213.43 Aligned_cols=338 Identities=15% Similarity=0.238 Sum_probs=229.7
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCC-CCchhhHHHHHHhcch---h--hHHHHHHHHHHHHHhcccCCCcCc
Q 002257 2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQD---Q--QVYGALFVLRILSRKYEFKSDEER 75 (946)
Q Consensus 2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P-~~Wp~Ll~~l~~~l~s---~--~~~~~L~~L~~i~k~~~~~~~~~~ 75 (946)
||+.|+++|.++++.+ ++++.+|+.|+++++| +.||+++|.|++.+++ + ...+|+.+|..++++++..
T Consensus 91 ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~----- 164 (462)
T 1ibr_B 91 VKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE----- 164 (462)
T ss_dssp HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGG-----
T ss_pred HHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCch-----
Confidence 7899999999888899 9999999999999999 5999999999999975 3 4579999999999986421
Q ss_pred chHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHH--HHHHHHhcCCCCCC
Q 002257 76 TPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWM--ILFLNVLERPVPSE 153 (946)
Q Consensus 76 ~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~--~~~~~il~~~~~~~ 153 (946)
.+...++.++|.+ ...+.+.. ....++..+++++..++.. + .+++..|+ ..+...+....
T Consensus 165 -~~~~~~~~ll~~l----~~~l~~~~---~~~~vr~~a~~~l~~~~~~-----~--~~~~~~~~~~~~l~~~l~~~~--- 226 (462)
T 1ibr_B 165 -QLQDKSNEILTAI----IQGMRKEE---PSNNVKLAATNALLNSLEF-----T--KANFDKESERHFIMQVVCEAT--- 226 (462)
T ss_dssp -GTGGGHHHHHHHH----HHHHSTTC---CCHHHHHHHHHHHHHHTTT-----T--HHHHTSHHHHHHHHHHHHHHT---
T ss_pred -hhHhHHHHHHHHH----HHHhCCCC---CCHHHHHHHHHHHHHHHHH-----H--HHhhhhhHHHHHHHHHHHHhc---
Confidence 1122233344443 33343321 1356788899998876422 1 11222221 22233322111
Q ss_pred CCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHH-HHHHHHHHHHHhhhCCcccCHHHH
Q 002257 154 GEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNLLNRIRVGGYLPDRVT 232 (946)
Q Consensus 154 ~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~-~~l~~~~~~l~~~~~~~~~~d~~~ 232 (946)
.+++ ..+|+++++++..+..+|+. ++.+|++ .+++.++..+. ...+.+.
T Consensus 227 ---~~~~-------~~vr~~~~~~l~~l~~~~~~--------------~~~~~~~~~l~~~~~~~~~------~~~~~v~ 276 (462)
T 1ibr_B 227 ---QCPD-------TRVRVAALQNLVKIMSLYYQ--------------YMETYMGPALFAITIEAMK------SDIDEVA 276 (462)
T ss_dssp ---TCSS-------HHHHHHHHHHHHHHHHHCGG--------------GCTTTTTTTHHHHHHHHHH------CSSHHHH
T ss_pred ---CCCC-------HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHc------CCchHHH
Confidence 1111 46789999999999988642 1233455 55555544442 1357899
Q ss_pred HHHHHHHHhhccCc-------------------hhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhcccc
Q 002257 233 NLILQYLSNSISKN-------------------SMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDII 293 (946)
Q Consensus 233 ~~~l~fl~~~~~~~-------------------~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~ 293 (946)
..+++||..+++.. ..++.+++++..++..++ ..+. +.|.+ .+
T Consensus 277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~-~~l~--~~d~d---------------~~ 338 (462)
T 1ibr_B 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT-QTLT--KQDEN---------------DD 338 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH-HHTT--CCCSS---------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH-HHHH--hcccc---------------cc
Confidence 99999999987643 122344555566665432 3332 22211 11
Q ss_pred ccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc--CCcchHHHH
Q 002257 294 EDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ--TEPYKSELE 371 (946)
Q Consensus 294 ~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~--~~~~~~~l~ 371 (946)
++.|++|.+|..+|..++..+++.+++.+++++.+.+++ .+|+.|+||++++|.+++++.. ..++ +.
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~--------~~~~~r~aal~~l~~l~~~~~~~~~~~~---l~ 407 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN--------PDWRYRDAAVMAFGCILEGPEPSQLKPL---VI 407 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCTTTTCTT---TT
T ss_pred cccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHhcCCcHHHHHHH---HH
Confidence 345899999999999999999988999999999888864 2899999999999999987642 1222 22
Q ss_pred HHHHHhcccCCCCCccchhHHHHHHHHhhhccccC---ChhHHHHHHHHHHhcCC
Q 002257 372 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLR 423 (946)
Q Consensus 372 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~---~~~~~~~~~~~l~~~L~ 423 (946)
. +...+++.+++++|.+|.+|||++|++++.... .++++..+++.++++|+
T Consensus 408 ~-~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 408 Q-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp T-HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred H-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 2 345677778899999999999999999874322 23678999999998874
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.83 E-value=1.7e-17 Score=208.37 Aligned_cols=601 Identities=12% Similarity=0.109 Sum_probs=372.4
Q ss_pred hhHHHHHhc--CChhHHHHHHHHHHHHHhhc-------CCCCchhhHHH--------HHHhcchh--hHHHHHHHHHHHH
Q 002257 4 DHILVFVAQ--VPPLLRVQLGECLKTIIHAD-------YPEQWPHLLDW--------VKHNLQDQ--QVYGALFVLRILS 64 (946)
Q Consensus 4 ~~Ll~~l~~--~~~~ir~ql~~~is~Ia~~D-------~P~~Wp~Ll~~--------l~~~l~s~--~~~~~L~~L~~i~ 64 (946)
..|++.+.+ .+..+|...+.++......+ ++..|+.+.+. +++.+.++ .++++..++..|+
T Consensus 38 ~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~~~~~~~l~~i~ 117 (876)
T 1qgr_A 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIA 117 (876)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 456667765 45789999999999987655 34679888777 77777655 2388899999998
Q ss_pred HhcccCCCcCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHH
Q 002257 65 RKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLN 144 (946)
Q Consensus 65 k~~~~~~~~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~ 144 (946)
+..-. .+ .. +.++|.|.+.+ .++.. ...++..+++++..+...--|+.+ ...++..++.+..
T Consensus 118 ~~~~~--~~---~w----~~ll~~l~~~l----~~~~~---~~~~r~~al~~l~~l~~~~~~~~~--~~~~~~ll~~l~~ 179 (876)
T 1qgr_A 118 CAEIP--VN---QW----PELIPQLVANV----TNPNS---TEHMKESTLEAIGYICQDIDPEQL--QDKSNEILTAIIQ 179 (876)
T ss_dssp HHHGG--GT---CC----TTHHHHHHHHH----HCTTC---CHHHHHHHHHHHHHHHHHSCHHHH--GGGHHHHHHHHHH
T ss_pred HhhCc--cc---cc----HHHHHHHHHHH----hCCCC---CHHHHHHHHHHHHHHHHhcCHhhH--HhHHHHHHHHHHH
Confidence 86311 01 11 12344444333 22100 134567778887766533224444 3467788888887
Q ss_pred HhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 002257 145 VLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVG 224 (946)
Q Consensus 145 il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~ 224 (946)
.+..+-+ + +.+|..+++++..++...+ .. +.. ..+...+++.+...+ .
T Consensus 180 ~l~~~~~------~---------~~vr~~a~~~l~~~~~~~~------~~---~~~---~~~~~~il~~l~~~~---~-- 227 (876)
T 1qgr_A 180 GMRKEEP------S---------NNVKLAATNALLNSLEFTK------AN---FDK---ESERHFIMQVVCEAT---Q-- 227 (876)
T ss_dssp HHSTTCS------C---------HHHHHHHHHHHHHHGGGCH------HH---HTS---HHHHHHHHHHHHHHT---T--
T ss_pred hhcCCCC------C---------HHHHHHHHHHHHHHHHHHH------HH---HHh---HHHHHHHHHHHHHHc---C--
Confidence 7754210 1 4677889999887764211 00 000 000011333332222 1
Q ss_pred cccCHHHHHHHHHHHHhhccCchhhhhchhhHH-HHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHH
Q 002257 225 GYLPDRVTNLILQYLSNSISKNSMYNLLQPRLD-VLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTAS 303 (946)
Q Consensus 225 ~~~~d~~~~~~l~fl~~~~~~~~~~~~l~~~l~-~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa 303 (946)
...+++...+++.+..+++. .++.+.+++. .++..++ ..+. | +..+.|..|
T Consensus 228 -~~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~~~~-~~~~-----------~-------------~~~~v~~~a 279 (876)
T 1qgr_A 228 -CPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITI-EAMK-----------S-------------DIDEVALQG 279 (876)
T ss_dssp -CSSHHHHHHHHHHHHHHHHH--SGGGCHHHHTTTHHHHHH-HHHT-----------C-------------SSHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH-HHhc-----------C-------------CchHHHHHH
Confidence 12367888888888887653 3345666666 5555332 2111 0 112345555
Q ss_pred HHHHHHHHHhc------------------------CcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhh
Q 002257 304 MDFVSELVRKR------------------------GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 359 (946)
Q Consensus 304 ~~ll~~l~~~~------------------------~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~ 359 (946)
..++..+++.. .+..+..+++.+.+.+.....+. +.++|..|.+|..+++.++..
T Consensus 280 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~-~~~~~~~r~~a~~~l~~l~~~ 358 (876)
T 1qgr_A 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND-DDDDWNPCKAAGVCLMLLATC 358 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSC-CTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccc-cccccHHHHHHHHHHHHHHHH
Confidence 55555555431 01123445555556665432222 124799999999999999988
Q ss_pred hhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCCCCCCchHHHHHHH
Q 002257 360 LKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDPELPVRVDSVFA 436 (946)
Q Consensus 360 l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~---~~~~~~~~~l~~~L~d~~~~V~~~Aa~A 436 (946)
+.+ .. ++. +.+++...++++++.+|..|++++|.++... .+. .++..+++.+++.|.|++..||..|+.+
T Consensus 359 ~~~--~~---~~~-~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~ 431 (876)
T 1qgr_A 359 CED--DI---VPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGP-EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431 (876)
T ss_dssp HGG--GG---HHH-HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CcH--hh---HHH-HHHHHHHHccCCChHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 763 22 222 3345555677889999999999999998632 111 4577889999999999999999999999
Q ss_pred HHHHHHhcccccccccchHHHHHHHHHHHhhhh--hhhHHHHHHHHHHhhC--------------CcccccHHHHHHHHH
Q 002257 437 LRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE--NEDLVFTLETIVDKFG--------------EEMAPYALGLCQNLA 500 (946)
Q Consensus 437 l~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~--~e~l~~~L~~iv~~~~--------------~~i~p~~~~l~~~L~ 500 (946)
+.+++..........|+++.++..|+..++... .+....+|..++..++ +.+.||...+++.|.
T Consensus 432 l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~ 511 (876)
T 1qgr_A 432 VGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLL 511 (876)
T ss_dssp HHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHH
T ss_pred HHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHH
Confidence 999999853211256899999999999987621 1224566777777654 358899998888776
Q ss_pred HHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhccc-----------ch----h
Q 002257 501 AAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT-----------DG----Q 565 (946)
Q Consensus 501 ~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~-----------~~----~ 565 (946)
. ...... . +....+..++++++.++..++.. ...+...++|.+...+.. +. .
T Consensus 512 ~----~l~~~~--~----~~~~~r~~~~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~ 578 (876)
T 1qgr_A 512 E----TTDRPD--G----HQNNLRSSAYESLMEIVKNSAKD---CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN 578 (876)
T ss_dssp H----HTTSCS--S----CSTTHHHHHHHHHHHHHHTCCST---THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred H----HHhCcC--c----chhhHHHHHHHHHHHHHHHCchh---hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence 4 332111 0 11224457899999999988642 222344555555444331 11 2
Q ss_pred hHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHhhhH--hhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHH
Q 002257 566 EVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEALADWA--IDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSM 641 (946)
Q Consensus 566 ~~~~~~l~ll~~l~~~~~--~i~p~l~~l~~~l~~~~~~~~--~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i 641 (946)
+....++..+..++...+ .+.|.+..++|.++..+.... .......+.++.+++...+..|. +|+..++..
T Consensus 579 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~-----~~~~~~~~~ 653 (876)
T 1qgr_A 579 DLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL-----KYMEAFKPF 653 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGG-----GGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHH-----HHHHHHHHH
Confidence 344567788888876543 345667788888888876432 13445667778887765555555 788888888
Q ss_pred HHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Q 002257 642 VSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRA-EKSYLKCLLVQVIADAL 709 (946)
Q Consensus 642 ~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~-~~~~~~~~~l~v~~~~~ 709 (946)
+.+.+.+. .....+..++.++..++..++..+.++++.++..++..+... ....++...+..+..+.
T Consensus 654 l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 654 LGIGLKNY-AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIA 721 (876)
T ss_dssp HHHHHHHC-TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHcCc-chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHH
Confidence 88888643 122334568899999999998889999999999999998762 23445555555555544
No 13
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.82 E-value=2e-17 Score=211.58 Aligned_cols=429 Identities=12% Similarity=0.118 Sum_probs=263.6
Q ss_pred hhhhHHHHHhc-------CChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--hHHHHHHHHHHHHHhc---cc
Q 002257 2 VRDHILVFVAQ-------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKY---EF 69 (946)
Q Consensus 2 Ir~~Ll~~l~~-------~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~~~~L~~L~~i~k~~---~~ 69 (946)
||+.|++.+.+ .++.||++++.+|+.|+++|||++||+++++|++.++++ ...++|.+|..+++.. +.
T Consensus 90 Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~ 169 (1204)
T 3a6p_A 90 LKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQT 169 (1204)
T ss_dssp HHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccc
Confidence 79999999863 468899999999999999999999999999999999876 5689999999998763 22
Q ss_pred CCCcCcchHHHHHHHHhHHHHHHHHHHhhcc----------CCC----hhHHHHHHHHHHHhHHHHhhhhhh-hcCChhh
Q 002257 70 KSDEERTPVYRIVEETFHHLLNIFNRLVQIV----------NPS----LEVADLIKLICKIFWSSIYLEIPK-QLLDPNV 134 (946)
Q Consensus 70 ~~~~~~~~l~~i~~~~~p~L~~i~~~l~~~~----------~~~----~~~~~~~~~~lki~~~~~~~~lp~-~~~~~~~ 134 (946)
.....++.+...+...+|.++.++.+.++.. ..+ .....+...+++++.+++.- .|. .+.+ .
T Consensus 170 ~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W-i~~~~i~~--~ 246 (1204)
T 3a6p_A 170 LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW-VSMSHITA--E 246 (1204)
T ss_dssp SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT-SCHHHHHT--T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc-cCHHHHHh--c
Confidence 2222223455555544555555555444320 000 12456778888888765432 221 1111 1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCC--------------------------
Q 002257 135 FNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDL-------------------------- 188 (946)
Q Consensus 135 l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~-------------------------- 188 (946)
-..+++.+...++.+ +++..++++|+.++.+++.+
T Consensus 247 ~~~ll~~l~~~l~~~-------------------~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~ 307 (1204)
T 3a6p_A 247 NCKLLEILCLLLNEQ-------------------ELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAD 307 (1204)
T ss_dssp TSHHHHHHHHGGGCT-------------------TTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHcCCH-------------------HHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 123555555444321 11233334444333332111
Q ss_pred -CCCChhhH----HHHHHHHH------------------hhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhccC
Q 002257 189 -KLQNPENR----AFAQMFQK------------------NYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISK 245 (946)
Q Consensus 189 -~~~~~~~~----~f~~~f~~------------------~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~ 245 (946)
.-..++.. .+++.+.. ..+..+++.++.... . -++.+...+++||...++.
T Consensus 308 ~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~----~--~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 308 GGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTT----H--PSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHT----S--SCHHHHHHHHHHHHHHHSC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHh----C--ccHHhHHHHHHHHHHHHhc
Confidence 00011111 22222210 011122222222221 1 2567777889999987765
Q ss_pred ch--hhhhchhhHHHHHHHHH--hcccccChhhHhhhhcCh-HHHHHhhcccc----ccccCHHHHHHHHHHHHHHhcCc
Q 002257 246 NS--MYNLLQPRLDVLLFEIV--FPLMCFNDNDQKLWDEDP-HEYVRKGYDII----EDLYSPRTASMDFVSELVRKRGK 316 (946)
Q Consensus 246 ~~--~~~~l~~~l~~li~~ii--~p~l~lt~~d~e~we~Dp-~efi~~~~d~~----~d~~s~R~aa~~ll~~l~~~~~~ 316 (946)
.. ....+.+.++.++..+. +..+.+.+++.. | .+|...++|+. ..+.+-|+...++++.++...+.
T Consensus 382 ~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~-----~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~ 456 (1204)
T 3a6p_A 382 EILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDS-----PSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK 456 (1204)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSS-----THHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhcCccccCC-----cchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 32 12345677888877651 366677665421 1 12322222211 23577899999999999999988
Q ss_pred ccHHHHHHHHHHhhcccCCCC-----------------cCCCCchhHhHHHHHHHHHHhhhhc-C-CcchH--HHHHHHH
Q 002257 317 ENLQKFIQFIVGIFKRYDETP-----------------VEYKPYRQKDGALLAIGALCDKLKQ-T-EPYKS--ELERMLV 375 (946)
Q Consensus 317 ~~l~~ll~~i~~~l~~~~~~~-----------------~~~~~~~~keaal~alg~ia~~l~~-~-~~~~~--~l~~~l~ 375 (946)
..+..+.+++.+.+.+...+. .....|...||...+++++..++.+ . ++... -+...+
T Consensus 457 ~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll- 535 (1204)
T 3a6p_A 457 TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELL- 535 (1204)
T ss_dssp HHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH-
Confidence 888888888877766532211 1123689999999999999998843 1 11111 122333
Q ss_pred HhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCC------------CCchHHHHHHHHHHHHHh
Q 002257 376 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP------------ELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 376 ~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~------------~~~V~~~Aa~Al~~~~~~ 443 (946)
+.++ .++..+|.+|.|++-++|+|+.+.-+.++.+..+++.++..+.+. ...||..||.|+.+++..
T Consensus 536 ~~ll-~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~ 614 (1204)
T 3a6p_A 536 QMVL-NFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRD 614 (1204)
T ss_dssp HHHH-HCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-hCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3322 223368899999999999988753345688999999998877541 235999999999999998
Q ss_pred cccccccccchHHHHHHHHHHHhh
Q 002257 444 CRDLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 444 ~~~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
.++.+.||+++|.+.+-.++..
T Consensus 615 --~~~~L~p~~~~i~~~~~~~l~~ 636 (1204)
T 3a6p_A 615 --YPQLVLPNFDMLYNHVKQLLSN 636 (1204)
T ss_dssp --CHHHHGGGHHHHHHHHHHHHHS
T ss_pred --hhHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999888863
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=5.4e-17 Score=202.75 Aligned_cols=610 Identities=10% Similarity=0.073 Sum_probs=389.0
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHHHhhcCCC---------CchhhHHHHHHhcchh--hH-HHHHHHHHHHHHhcccCCC
Q 002257 5 HILVFVAQVPPLLRVQLGECLKTIIHADYPE---------QWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSD 72 (946)
Q Consensus 5 ~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~---------~Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~~ 72 (946)
.|++.+.+++..+|.....+++.|+.. +|. .++.++|.+++.++++ .+ ..|+.+|..+++..
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~-~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~----- 205 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR----- 205 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHH-HTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHH-hHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 455566677788899888999998864 343 2788999999988866 33 57888887766431
Q ss_pred cCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCC
Q 002257 73 EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPS 152 (946)
Q Consensus 73 ~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~ 152 (946)
...+...+..++|.+... .++. ...+++.+++++..+.. ..|+.+ ..++...++.+...++.
T Consensus 206 --~~~~~~~~~~~l~~l~~~----~~d~-----~~~vr~~a~~~L~~l~~-~~~~~~--~~~l~~l~~~l~~~~~~---- 267 (852)
T 4fdd_A 206 --TQALMLHIDSFIENLFAL----AGDE-----EPEVRKNVCRALVMLLE-VRMDRL--LPHMHNIVEYMLQRTQD---- 267 (852)
T ss_dssp --CHHHHTSHHHHHHHHHHH----HTCC-----CHHHHHHHHHHHHHHHH-HCHHHH--GGGHHHHHHHHHHHHTC----
T ss_pred --cHHHHHHHHHHHHHHHHH----cCCC-----CHHHHHHHHHHHHHHHH-hCHHHH--HHHHHHHHHHHHHHccC----
Confidence 112222333444444332 2221 34667888888876643 346655 34677777777777643
Q ss_pred CCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhh--------hC-
Q 002257 153 EGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRI--------RV- 223 (946)
Q Consensus 153 ~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~--------~~- 223 (946)
.+ ..++..+++.+..+.+. + ..+ .++.++++.++...+..+... ..
T Consensus 268 ----~~---------~~vr~~a~e~l~~l~~~----~----~~~----~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 268 ----QD---------ENVALEACEFWLTLAEQ----P----ICK----DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp ----SS---------HHHHHHHHHHHHHHTTS----T----THH----HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred ----Cc---------HHHHHHHHHHHHHHhcc----h----hHH----HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 12 24667777776655432 1 111 133556666666655544100 00
Q ss_pred ----------CcccCHHHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhcccc
Q 002257 224 ----------GGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDII 293 (946)
Q Consensus 224 ----------~~~~~d~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~ 293 (946)
..|.-.+....++..+..... +. .++.++..+. .. ..
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-----~~---~~~~l~~~l~-~~----------------------l~-- 369 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYR-----DE---LLPHILPLLK-EL----------------------LF-- 369 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHG-----GG---GHHHHHHHHH-HH----------------------HT--
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhcc-----HH---HHHHHHHHHH-HH----------------------hc--
Confidence 011001223333333333221 01 1222222111 11 11
Q ss_pred ccccCHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc--CCcchH
Q 002257 294 EDLYSPRTASMDFVSELVRKRGK---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ--TEPYKS 368 (946)
Q Consensus 294 ~d~~s~R~aa~~ll~~l~~~~~~---~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~--~~~~~~ 368 (946)
+..+..|.+|...+..+++..++ ..++.+++.+...+.. .++..|.++..++|.++..+.. ...+..
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d--------~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 441 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD--------KKALVRSITCWTLSRYAHWVVSQPPDTYLK 441 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTHHHHHHSCTTTTHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 12367899999999998875432 3556677766666643 2789999999999999987653 222322
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccc
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD 446 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~--~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~ 446 (946)
..+ +.++..+.++++-+|..|||.++.+++.. .+ ..++..+++.++.++++.+......+..|+..++.....
T Consensus 442 ---~ll-~~L~~~L~d~~~~vr~~a~~aL~~l~~~~-~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~ 516 (852)
T 4fdd_A 442 ---PLM-TELLKRILDSNKRVQEAACSAFATLEEEA-CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516 (852)
T ss_dssp ---HHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGG
T ss_pred ---HHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHh-hHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhh
Confidence 222 33444556788999999999999997521 11 146788888888888755444545567777777765321
Q ss_pred ccccccchHHHHHHHHHHHhhhh---h--hhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhc---cCCCC--C
Q 002257 447 LNEIRPILPQLLDEFFKLMNEVE---N--EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTA---EADED--A 516 (946)
Q Consensus 447 ~~~l~p~l~~il~~Ll~ll~~~~---~--e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~---~~d~~--~ 516 (946)
.-.-.+|++.++..+++..+... . ..+..++..++..++..+.||+..++..+...+...+... ..+++ +
T Consensus 517 ~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~ 596 (852)
T 4fdd_A 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE 596 (852)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccC
Confidence 11113578888888876554321 1 2367888889999999999999999888777665544210 11121 1
Q ss_pred CChhhHHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC-CCCCHHHHHHHH
Q 002257 517 DDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWP 594 (946)
Q Consensus 517 ~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~-~~i~p~l~~l~~ 594 (946)
.+++. +....+++++.+++.++.. ....+ .+.++|++..+++++..+..+.++.+++.+.... ..+.|.+..++|
T Consensus 597 ~~d~~-~~~~~l~~l~~l~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp 673 (852)
T 4fdd_A 597 APDKD-FMIVALDLLSGLAEGLGGN--IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMP 673 (852)
T ss_dssp CCCTH-HHHHHHHHHHHHHHHHGGG--GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred CCcch-HHHHHHHHHHHHHHHHhHh--HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11222 4456788899999988643 22222 2578999999998877888999999999998765 578888888999
Q ss_pred HHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCc
Q 002257 595 LMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQV 674 (946)
Q Consensus 595 ~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~ 674 (946)
.+.+.+...........+.++..+.....+.+. +|+..++..+.+++.++.........++.+++.+...+|..+
T Consensus 674 ~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~-----p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~ 748 (852)
T 4fdd_A 674 ILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ-----PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748 (852)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGG-----GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHhhHhHH-----HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHh
Confidence 998887533334444555666666555444454 788999998888987665544455678999999999988888
Q ss_pred hhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCHHHHH
Q 002257 675 DHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTL 717 (946)
Q Consensus 675 ~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~~~~l 717 (946)
.|+++.++..++..|........+...+.-++.++..||..++
T Consensus 749 ~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~ 791 (852)
T 4fdd_A 749 APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI 791 (852)
T ss_dssp GGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTG
T ss_pred CccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHH
Confidence 9999999999999998755556677777778888888998443
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.73 E-value=8.6e-14 Score=174.14 Aligned_cols=575 Identities=13% Similarity=0.158 Sum_probs=361.9
Q ss_pred HHHHhcC--ChhHHHHHHHHHHHHHhh---cCC--CCchhhHHHHHHhcchh--h-HHHHHHHHHHHHHhcccCCCcCcc
Q 002257 7 LVFVAQV--PPLLRVQLGECLKTIIHA---DYP--EQWPHLLDWVKHNLQDQ--Q-VYGALFVLRILSRKYEFKSDEERT 76 (946)
Q Consensus 7 l~~l~~~--~~~ir~ql~~~is~Ia~~---D~P--~~Wp~Ll~~l~~~l~s~--~-~~~~L~~L~~i~k~~~~~~~~~~~ 76 (946)
++++.++ +..||.....++..++.. .+. ..|+.+++.+.+.++++ . -..++.+|..+++.+. .
T Consensus 185 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~-------~ 257 (861)
T 2bpt_A 185 VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY-------T 257 (861)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG-------G
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-------H
Confidence 4445555 678999999998887532 222 23677899988888765 3 3689999999998763 1
Q ss_pred hHHHHHH-HHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhh----------------hhhcCChhhHHHHH
Q 002257 77 PVYRIVE-ETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEI----------------PKQLLDPNVFNAWM 139 (946)
Q Consensus 77 ~l~~i~~-~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~l----------------p~~~~~~~~l~~w~ 139 (946)
.+...+. .+++ ++...+.+. ...++..++..+..+..... |.++ ...+...+
T Consensus 258 ~~~~~l~~~l~~----~~~~~~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il 326 (861)
T 2bpt_A 258 FMKPYMEQALYA----LTIATMKSP-----NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA--LSSIKDVV 326 (861)
T ss_dssp GCHHHHHHTHHH----HHHHHTTCS-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH--HHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHcCC-----cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH--HHHHHHHH
Confidence 1222222 3333 333333221 23456666666555433210 1111 22345556
Q ss_pred HHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHH
Q 002257 140 ILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLN 219 (946)
Q Consensus 140 ~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~ 219 (946)
+.++..+..+.. ..++++ |.+++.+..++..+...+|. ..++.+++.+.+.+.
T Consensus 327 ~~ll~~l~~~~~----d~~d~~------~~~r~~a~~~L~~l~~~~~~-----------------~~~~~l~~~l~~~l~ 379 (861)
T 2bpt_A 327 PNLLNLLTRQNE----DPEDDD------WNVSMSAGACLQLFAQNCGN-----------------HILEPVLEFVEQNIT 379 (861)
T ss_dssp HHHHHHTTCCCC----C-CCCC------CHHHHHHHHHHHHHHHHHGG-----------------GGHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccc----cccccc------CcHHHHHHHHHHHHHHHccH-----------------hHHHHHHHHHHHHcC
Confidence 666666554210 011111 67888899999988887642 123444444444442
Q ss_pred hhhCCcccCHHHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCH
Q 002257 220 RIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSP 299 (946)
Q Consensus 220 ~~~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~ 299 (946)
... .+....++..+..+++... .+.+.++++.++..++ +.+. ||+ ..+
T Consensus 380 ---~~~---~~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~-~~l~-----------d~~-------------~~v 427 (861)
T 2bpt_A 380 ---ADN---WRNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSIL-NLMN-----------DQS-------------LQV 427 (861)
T ss_dssp ---CSS---HHHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHH-HGGG-----------CSC-------------HHH
T ss_pred ---CCC---hhHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH-HHcC-----------CCc-------------HHH
Confidence 122 3567777778888775421 1345666777666544 3321 221 335
Q ss_pred HHHHHHHHHHHHHhcC-----cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc--CCcchHHHHH
Q 002257 300 RTASMDFVSELVRKRG-----KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ--TEPYKSELER 372 (946)
Q Consensus 300 R~aa~~ll~~l~~~~~-----~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~--~~~~~~~l~~ 372 (946)
|.+|...+..++...+ ...++.+++.+...+.. +++.+.+|..+++.++..+.+ ...+...++.
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~---------~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~ 498 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD---------HPKVATNCSWTIINLVEQLAEATPSPIYNFYPA 498 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS---------CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc---------ChHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 6777888888887653 35677888877777643 368899999999999888642 1222223333
Q ss_pred HHHHhcccCCC--CCccchhHHHHHHHHhhhcccc-CChhHHHHHHHHHHhcCCC---------------CCCchHHHHH
Q 002257 373 MLVQHVFPEFS--SPVGHLRAKAAWVAGQYAHINF-SDQNNFRKALHSVVSGLRD---------------PELPVRVDSV 434 (946)
Q Consensus 373 ~l~~~v~p~l~--~~~~~lr~ra~~~l~~~~~~~f-~~~~~~~~~~~~l~~~L~d---------------~~~~V~~~Aa 434 (946)
++ +.+++.+. +.++-+|..++.+++.+....- .....+..+++.+++.|.+ ....+|..++
T Consensus 499 il-~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 499 LV-DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HH-HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence 22 34444454 3447899999999999965320 0113455666666665532 1344788999
Q ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh----hhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhc
Q 002257 435 FALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTA 510 (946)
Q Consensus 435 ~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~----e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~ 510 (946)
.+|..++... ...+.||++.+++.++.+++.... +....++..++...++.+.||...+++.|...+ +.
T Consensus 578 ~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l----~~- 650 (861)
T 2bpt_A 578 TVLAAVIRKS--PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL----NQ- 650 (861)
T ss_dssp HHHHHHHHHC--GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH----HC-
T ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh----cc-
Confidence 9999999884 457899999999999999976543 335567888888889999999999888777543 21
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccch--hhHHHHHHHHHHHHHhcC-CCCCH
Q 002257 511 EADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG--QEVFEEVLEIVSYMTFFS-PTISL 587 (946)
Q Consensus 511 ~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~--~~~~~~~l~ll~~l~~~~-~~i~p 587 (946)
.++ ..+...+.+++.++++++.. +..+.+.++|.+...++... .+..+.++..++.++... ..+.|
T Consensus 651 -~~~-------~vr~~a~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~ 719 (861)
T 2bpt_A 651 -VDS-------PVSITAVGFIADISNSLEED---FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIP 719 (861)
T ss_dssp -TTS-------HHHHHHHHHHHHHHHHTGGG---GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHH
T ss_pred -ccH-------HHHHHHHHHHHHHHHHhchh---ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHH
Confidence 121 13445677788888887632 34455677888877776543 578888999999888764 46777
Q ss_pred HHHHHHHHHHHHHhh-------hHhhhH----hhhHHHHHHHHhc-C--cccccccCCCchHHHHHHHHHHHHcCCC--C
Q 002257 588 EMWSLWPLMMEALAD-------WAIDFF----PNILVPLDNYISR-G--TAHFLTCKEPDYQQSLWSMVSSIMADKN--L 651 (946)
Q Consensus 588 ~l~~l~~~l~~~~~~-------~~~~~l----~~~~~~L~~~i~~-~--~~~~l~~~~~~~~~~i~~i~~~ll~~~~--~ 651 (946)
.+-.++|.+...+.. ...++. ...+..+...+.. + ++.+. +|+..++..+.+.+.+.. .
T Consensus 720 ~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~-----~~~~~i~~~l~~~~~d~~~~~ 794 (861)
T 2bpt_A 720 YLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF-----PYVGTIFQFIAQVAEDPQLYS 794 (861)
T ss_dssp HHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG-----GGHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH-----HHHHHHHHHHHHHHcCcccCC
Confidence 788888888887652 011221 2334444444432 2 23333 688999998888875321 1
Q ss_pred CCcccCchhhHHHHHHHHc-ccCchhchH-HHHHHHHHHHHh
Q 002257 652 EDGDIEPAPKLIEVVFQNC-KGQVDHWVE-PYLRITVERLRR 691 (946)
Q Consensus 652 ~~~~~~~a~~ll~~il~~~-~~~~~~~l~-~il~~~~~~L~~ 691 (946)
++..+..|+.++..+...+ |+.+.++++ .++..++.++..
T Consensus 795 ~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 795 EDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhh
Confidence 3334567899999999999 668999999 899999998874
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.73 E-value=9.2e-16 Score=199.31 Aligned_cols=599 Identities=11% Similarity=0.079 Sum_probs=348.3
Q ss_pred hhhhHHHHHhcCChhHHHHHHHHHHHHHhhcCCC---------CchhhHHHHHHhcch-h---hHHHHHHHHHHHHHhcc
Q 002257 2 VRDHILVFVAQVPPLLRVQLGECLKTIIHADYPE---------QWPHLLDWVKHNLQD-Q---QVYGALFVLRILSRKYE 68 (946)
Q Consensus 2 Ir~~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~---------~Wp~Ll~~l~~~l~s-~---~~~~~L~~L~~i~k~~~ 68 (946)
|+..|+.+|.+++..+|...+.+++.|+..-.|. .||+++|.|.+.+.+ + ...+|+.+|..+++.+.
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~ 166 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 166 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence 4566777777888899999999999999876665 499999999999983 4 45899999999998753
Q ss_pred cCCCcCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcC
Q 002257 69 FKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLER 148 (946)
Q Consensus 69 ~~~~~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~ 148 (946)
.. +...++.+++.|+. .+.+. ...++..+++++..+... .++.+ ++.+++.+...+..
T Consensus 167 ~~-------l~~~~~~ll~~l~~----~L~~~-----~~~vR~~a~~al~~l~~~-~~~~~-----~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 167 GL-------LVNFHPSILTCLLP----QLTSP-----RLAVRKRTIIALGHLVMS-CGNIV-----FVDLIEHLLSELSK 224 (1230)
T ss_dssp SS-------CTTTHHHHHHHHGG----GGGCS-----SHHHHHHHHHHHHHHTTT-C---------CTTHHHHHHHHHHH
T ss_pred hH-------HHHHHHHHHHHHHH----HHcCC-----cHHHHHHHHHHHHHHHHh-cCHHH-----HHHHHHHHHHHhcc
Confidence 11 11112233333322 23322 235678888887766432 23222 22344445545433
Q ss_pred CCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccC
Q 002257 149 PVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 228 (946)
Q Consensus 149 ~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~ 228 (946)
.. + +..|+.+++++..+....|. .+.+|++.+++.++..+.. ....-
T Consensus 225 ~~-------~---------~~~r~~a~~~l~~l~~~~~~--------------~~~~~l~~l~~~ll~~l~d---~~~~v 271 (1230)
T 1u6g_C 225 ND-------S---------MSTTRTYIQCIAAISRQAGH--------------RIGEYLEKIIPLVVKFCNV---DDDEL 271 (1230)
T ss_dssp TC-------S---------SCSCTTHHHHHHHHHHHSSG--------------GGTTSCTTHHHHHHHHHSS---CCTTT
T ss_pred CC-------c---------hhHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHhcC---CCHHH
Confidence 21 1 12234567777777765432 1245666677777666632 11111
Q ss_pred HHHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhh----HhhhhcChH------HHH--Hhhc-ccccc
Q 002257 229 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDND----QKLWDEDPH------EYV--RKGY-DIIED 295 (946)
Q Consensus 229 d~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d----~e~we~Dp~------efi--~~~~-d~~~d 295 (946)
......++..|...+. +.+.|+++.++..++ ..+...++. .+.|.++.+ +.- ...+ +..+.
T Consensus 272 R~~a~~~l~~l~~~~~-----~~~~~~l~~li~~ll-~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 345 (1230)
T 1u6g_C 272 REYCIQAFESFVRRCP-----KEVYPHVSTIINICL-KYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345 (1230)
T ss_dssp HHHHHHHHHHHHHCTT-----CCCHHHHHHHHHHHT-TCCCCC------------------------------------C
T ss_pred HHHHHHHHHHHHHHCh-----HHHHHhHHHHHHHHH-HHhCCCCCCCCcccccccccccccccccchhhccccccccccc
Confidence 1344444555444322 346778888888544 666654321 111211110 000 0000 01112
Q ss_pred ccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCC-----------
Q 002257 296 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE----------- 364 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~----------- 364 (946)
.|.+|.+|...+..++...++ .+.++++-+...+..+... .+...|.+++.+++.+...+....
T Consensus 346 ~~~vR~~A~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~d----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 420 (1230)
T 1u6g_C 346 SWKVRRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRFKE----REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420 (1230)
T ss_dssp TTHHHHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTTSC----SSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred CHHHHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence 477899999999999987653 3333333333333332221 256778888888887765432100
Q ss_pred --cchHHHHHH---HHHhcccCCCCCccchhHHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCC--chHHHHHH
Q 002257 365 --PYKSELERM---LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPEL--PVRVDSVF 435 (946)
Q Consensus 365 --~~~~~l~~~---l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~--~~~~~~~~~~l~~~L~d~~~--~V~~~Aa~ 435 (946)
.-...+..+ +...+.+.++++++.+|..+|..++.+... ... ..++..+++.++..|.|+.. .|+..|+.
T Consensus 421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~-~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~ 499 (1230)
T 1u6g_C 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALS 499 (1230)
T ss_dssp CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHH
T ss_pred ccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-chhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 000111121 122233347788899999999999999763 111 15789999999999998764 68999999
Q ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHhhhhhh---hHHHHHHHHHHhhCC-------cccccHHHHHHHHHHHHHH
Q 002257 436 ALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGE-------EMAPYALGLCQNLAAAFWR 505 (946)
Q Consensus 436 Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e---~l~~~L~~iv~~~~~-------~i~p~~~~l~~~L~~~~~~ 505 (946)
++..++... .++.+.||++.++..|+..+++.... ....++..++..+++ .+.||...+++.+..
T Consensus 500 ~l~~~~~~~-~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~---- 574 (1230)
T 1u6g_C 500 CLYVILCNH-SPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK---- 574 (1230)
T ss_dssp HHHHHHHSS-CGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHhC-CHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH----
Confidence 999998764 35668899999999999888664322 234567777777776 778888888887764
Q ss_pred HHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCC--
Q 002257 506 CMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-- 583 (946)
Q Consensus 506 ~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~-- 583 (946)
.+... |+ + ...+...+.+++.++...+.. +....+.++|.+...+.++. ....+...++.+.....
T Consensus 575 ~l~~~--d~----~-~~vr~~a~~~lg~L~~~~g~~---~~~~~~~~l~~L~~~l~~e~--~r~~~~~al~~i~~~~~~~ 642 (1230)
T 1u6g_C 575 RLKAA--DI----D-QEVKERAISCMGQIICNLGDN---LGSDLPNTLQIFLERLKNEI--TRLTTVKALTLIAGSPLKI 642 (1230)
T ss_dssp HHSCS--SS----C-HHHHHHHHHHHHHHHHHTGGG---CCTHHHHHHHHHHHHTTSSS--HHHHHHHHHHHHTTCSSCC
T ss_pred HHhcc--CC----C-HHHHHHHHHHHHHHHHHhCch---hhhhHHHHHHHHHHHhccch--hHHHHHHHHHHHHhCcccc
Confidence 33211 21 2 235556778888998887542 12234567788877777643 22234555555554321
Q ss_pred CCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcC-CCCCCcccCchhhH
Q 002257 584 TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD-KNLEDGDIEPAPKL 662 (946)
Q Consensus 584 ~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~-~~~~~~~~~~a~~l 662 (946)
.+.+.+..++|.+...+.......-...+.++..++...+..+- .+.+..++..++.- ...+......++.+
T Consensus 643 ~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~-------~~~v~~~l~~ll~ll~~~D~~~~~~~~~~ 715 (1230)
T 1u6g_C 643 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT-------AAMIDAVLDELPPLISESDMHVSQMAISF 715 (1230)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC-------HHHHHHHHTTCGGGSCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCC-------HHHHHHHHHHHHhhcCcchHHHHHHHHHH
Confidence 44556668888888776533333444566777777766554332 12233333322211 01122223466777
Q ss_pred HHHHHHHcccCchhchHHHHHHHHHHHHh
Q 002257 663 IEVVFQNCKGQVDHWVEPYLRITVERLRR 691 (946)
Q Consensus 663 l~~il~~~~~~~~~~l~~il~~~~~~L~~ 691 (946)
+..++...+..+.++++.++..++..+..
T Consensus 716 L~~l~~~~~~~~~~~~~~~l~~~~~~l~~ 744 (1230)
T 1u6g_C 716 LTTLAKVYPSSLSKISGSILNELIGLVRS 744 (1230)
T ss_dssp HHHHTTSCGGGGGGTTTTTHHHHHHHHTC
T ss_pred HHHHHHhCchhHHHhHHhHHHHHHHHHcC
Confidence 88887777766666777777777766654
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.55 E-value=5.6e-12 Score=163.73 Aligned_cols=565 Identities=12% Similarity=0.093 Sum_probs=335.1
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh--hH-HHHHHHHHHHHHhcccCCCcCcchHHHH
Q 002257 5 HILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTPVYRI 81 (946)
Q Consensus 5 ~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~~~~~~~l~~i 81 (946)
.|++.|.+++..+|...+.+++.++..--+..|+.+++.|.+.+.++ .+ +++..+|..+++.+..... ........
T Consensus 52 ~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~-~~~~~~~~ 130 (1230)
T 1u6g_C 52 MILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS-GSALAANV 130 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc-ccchHHHH
Confidence 46666778889999999999999998654568899999999998766 33 6889999999987541100 00123345
Q ss_pred HHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCChhh
Q 002257 82 VEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQ 161 (946)
Q Consensus 82 ~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d~~~ 161 (946)
.+.++|.|+..+.. .. ...++..++.++..+.. ..++.+. ..++.+++.+...++.+ +
T Consensus 131 ~~~llp~L~~~l~~---~~-----~~~~~~~al~~l~~~~~-~~~~~l~--~~~~~ll~~l~~~L~~~--------~--- 188 (1230)
T 1u6g_C 131 CKKITGRLTSAIAK---QE-----DVSVQLEALDIMADMLS-RQGGLLV--NFHPSILTCLLPQLTSP--------R--- 188 (1230)
T ss_dssp HHHHHHHHHHHHSC---CS-----CHHHHHHHHHHHHHHHH-HTCSSCT--TTHHHHHHHHGGGGGCS--------S---
T ss_pred HHHHHHHHHHHHcC---CC-----chHHHHHHHHHHHHHHH-HhHhHHH--HHHHHHHHHHHHHHcCC--------c---
Confidence 56667766554431 11 23556777777766542 2344442 35677777777766431 1
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 002257 162 RKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSN 241 (946)
Q Consensus 162 ~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~ 241 (946)
..+|+.++.++..+....+. + + .+.+++.+++.+..... ......+++.+..
T Consensus 189 ------~~vR~~a~~al~~l~~~~~~-~------------~----~~~~l~~l~~~L~~~~~-----~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 189 ------LAVRKRTIIALGHLVMSCGN-I------------V----FVDLIEHLLSELSKNDS-----MSTTRTYIQCIAA 240 (1230)
T ss_dssp ------HHHHHHHHHHHHHHTTTC---------------------CTTHHHHHHHHHHHTCS-----SCSCTTHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhcCH-H------------H----HHHHHHHHHHHhccCCc-----hhHHHHHHHHHHH
Confidence 35788899988877653211 1 1 12234444444433211 1112222333333
Q ss_pred hccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCccc---
Q 002257 242 SISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKEN--- 318 (946)
Q Consensus 242 ~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~--- 318 (946)
++... .+.+.+++..++..++ ..+. | +....|.+|...+..+++..++.+
T Consensus 241 l~~~~--~~~~~~~l~~l~~~ll-~~l~-----------d-------------~~~~vR~~a~~~l~~l~~~~~~~~~~~ 293 (1230)
T 1u6g_C 241 ISRQA--GHRIGEYLEKIIPLVV-KFCN-----------V-------------DDDELREYCIQAFESFVRRCPKEVYPH 293 (1230)
T ss_dssp HHHHS--SGGGTTSCTTHHHHHH-HHHS-----------S-------------CCTTTHHHHHHHHHHHHHCTTCCCHHH
T ss_pred HHHHh--HHHHHHHHHHHHHHHH-HHhc-----------C-------------CCHHHHHHHHHHHHHHHHHChHHHHHh
Confidence 32211 1235566666655443 2221 0 114578899999999999887653
Q ss_pred HHHHHHHHHHhhcccCC-----------------CC------------cCCCCchhHhHHHHHHHHHHhhhhcCCcchHH
Q 002257 319 LQKFIQFIVGIFKRYDE-----------------TP------------VEYKPYRQKDGALLAIGALCDKLKQTEPYKSE 369 (946)
Q Consensus 319 l~~ll~~i~~~l~~~~~-----------------~~------------~~~~~~~~keaal~alg~ia~~l~~~~~~~~~ 369 (946)
++.+++.+...+..... .. .+...|+.|.+|..+++.++....+ .+...
T Consensus 294 l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~--~~~~~ 371 (1230)
T 1u6g_C 294 VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE--MLPEF 371 (1230)
T ss_dssp HHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT--THHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchh--HHHHH
Confidence 34444433333321000 00 0112599999999999999874221 11111
Q ss_pred HHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccC---------------C-----hhHHHHHHHHHHhcCCCCCCch
Q 002257 370 LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS---------------D-----QNNFRKALHSVVSGLRDPELPV 429 (946)
Q Consensus 370 l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~---------------~-----~~~~~~~~~~l~~~L~d~~~~V 429 (946)
++. +...+...+.+.++-+|..++..++.+....-. . ...+..+++.+.+.|++++..|
T Consensus 372 ~~~-l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~v 450 (1230)
T 1u6g_C 372 YKT-VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 450 (1230)
T ss_dssp HTT-THHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHH
T ss_pred HHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHH
Confidence 111 122334445677889999888877766431100 0 1345667777778899988899
Q ss_pred HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh--hhHHH---HHHHHHHhhCCc-ccccHHHHHHHHHHHH
Q 002257 430 RVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN--EDLVF---TLETIVDKFGEE-MAPYALGLCQNLAAAF 503 (946)
Q Consensus 430 ~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~--e~l~~---~L~~iv~~~~~~-i~p~~~~l~~~L~~~~ 503 (946)
|..++.++..++.. .+..+.||++.++..++..++.... +.... .+..++...+.+ +.||...+++.|..
T Consensus 451 r~~~~~~L~~l~~~--~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~-- 526 (1230)
T 1u6g_C 451 RQCCFNMLTELVNV--LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA-- 526 (1230)
T ss_dssp HHHHHHHHHHHHHH--STTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH--
T ss_pred HHHHHHHHHHHHHH--chhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH--
Confidence 99999999999988 4677889999999999999986432 22333 344444444433 67777777766653
Q ss_pred HHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcC----ChhHHHHHHhhHHHHHHHhcc--cchhhHHHHHHHHHHH
Q 002257 504 WRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR----LPHLFVQIEPTLLPIMRRMLT--TDGQEVFEEVLEIVSY 577 (946)
Q Consensus 504 ~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~----~~~~~~~l~~~l~p~i~~~l~--~~~~~~~~~~l~ll~~ 577 (946)
..+ |+ . ...+...+.++..+++.++. .+..+..+.+.++|.+...+. ....++.+.++..++.
T Consensus 527 --~l~----d~----~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~ 595 (1230)
T 1u6g_C 527 --CVG----DP----F-YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595 (1230)
T ss_dssp --HHT----CS----S-HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred --HHc----cc----c-hHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 232 22 2 22233467788888887754 112234455678888887773 3345677888899999
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhc-CcccccccCCCchHHHHHHHHHHHHcCCCCCCcc
Q 002257 578 MTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR-GTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGD 655 (946)
Q Consensus 578 l~~~~-~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~-~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~ 655 (946)
++... ..+.+.+..+++.+...+.+. ..-...+..+...... ++..+ ..++..++..+.+.+.+. +...
T Consensus 596 L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~-----~~~~~~i~~~L~~~l~~~--~~~~ 666 (1230)
T 1u6g_C 596 IICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDL-----RPVLGEGVPILASFLRKN--QRAL 666 (1230)
T ss_dssp HHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCC-----HHHHHHHHHHHHHHTTSC--CHHH
T ss_pred HHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccch-----HHHHHHHHHHHHHHHHhC--CHHH
Confidence 88775 456677777778777665421 1111223333322211 11111 267788888877777543 3333
Q ss_pred cCchhhHHHHHHHHcccCc
Q 002257 656 IEPAPKLIEVVFQNCKGQV 674 (946)
Q Consensus 656 ~~~a~~ll~~il~~~~~~~ 674 (946)
+..++..+..++.+.+..+
T Consensus 667 r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 667 KLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp HHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHhcccccC
Confidence 5578899999999987643
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.51 E-value=5.7e-12 Score=150.18 Aligned_cols=557 Identities=11% Similarity=0.071 Sum_probs=316.5
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHHHhhcCC-CCchhhHHHHHHhcchh-hH-HHHHHHHHHHHHhcccCCCcCcchHHHH
Q 002257 5 HILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-QV-YGALFVLRILSRKYEFKSDEERTPVYRI 81 (946)
Q Consensus 5 ~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P-~~Wp~Ll~~l~~~l~s~-~~-~~~L~~L~~i~k~~~~~~~~~~~~l~~i 81 (946)
.++..|.+++..+|...+..++.|+..--| ..|++++|.|.+.+..+ .+ ..+..+|..+++... . . ..
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~----~-~----~~ 84 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVG----G-P----EY 84 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGT----S-G----GG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC----c-H----HH
Confidence 467778889999999999999999986555 56999999999877443 33 455566655554321 1 0 11
Q ss_pred HHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCCCChhh
Q 002257 82 VEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQ 161 (946)
Q Consensus 82 ~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d~~~ 161 (946)
...++|.| ..+..+. ...++..++..+..+... +|.. ...+.+++++..+.+.
T Consensus 85 ~~~ll~~L----~~l~~~~-----~~~vR~~a~~~L~~l~~~-~~~~----~~~~~l~~~l~~l~~~------------- 137 (588)
T 1b3u_A 85 VHCLLPPL----ESLATVE-----ETVVRDKAVESLRAISHE-HSPS----DLEAHFVPLVKRLAGG------------- 137 (588)
T ss_dssp GGGGHHHH----HHHTTSS-----CHHHHHHHHHHHHHHHTT-SCHH----HHHHTHHHHHHHHHTC-------------
T ss_pred HHHHHHHH----HHHHhCc-----hHHHHHHHHHHHHHHHHH-CCHH----HHHHHHHHHHHHHhcC-------------
Confidence 22334443 3333322 345677777777665432 2321 1112234444444322
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHh
Q 002257 162 RKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSN 241 (946)
Q Consensus 162 ~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~ 241 (946)
+++..|..++.++..++...+ . ...+.+++.+...+.. .++.+...+++.|..
T Consensus 138 ----~~~~~R~~a~~~l~~~~~~~~------~-----------~~~~~l~~~l~~l~~d------~~~~VR~~a~~~l~~ 190 (588)
T 1b3u_A 138 ----DWFTSRTSACGLFSVCYPRVS------S-----------AVKAELRQYFRNLCSD------DTPMVRRAAASKLGE 190 (588)
T ss_dssp ----SSHHHHHHHGGGHHHHTTTSC------H-----------HHHHHHHHHHHHHHTC------SCHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHhcC------H-----------HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH
Confidence 125677888888776654321 1 1123344444343321 246778888888877
Q ss_pred hccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCc-ccHH
Q 002257 242 SISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGK-ENLQ 320 (946)
Q Consensus 242 ~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~-~~l~ 320 (946)
+++.-... . ..+.++ |.+. +. -.| +.+++|.+|...+..++...++ ...+
T Consensus 191 l~~~~~~~-~---~~~~l~-----~~l~------~~-~~d-------------~~~~vr~~a~~~l~~l~~~~~~~~~~~ 241 (588)
T 1b3u_A 191 FAKVLELD-N---VKSEII-----PMFS------NL-ASD-------------EQDSVRLLAVEACVNIAQLLPQEDLEA 241 (588)
T ss_dssp HHHTSCHH-H---HHHTHH-----HHHH------HH-HTC-------------SCHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhcHH-h---HHHHHH-----HHHH------HH-hcC-------------CcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 65432110 0 111122 2111 00 011 1256788899999999887754 2334
Q ss_pred HHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhh
Q 002257 321 KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 400 (946)
Q Consensus 321 ~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~ 400 (946)
.+++++...++. .+|+.|.++..++|.++..+... .+... +.+.+...++++++-+|..|++.++++
T Consensus 242 ~~~~~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~~~~-~~~~~----l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 242 LVMPTLRQAAED--------KSWRVRYMVADKFTELQKAVGPE-ITKTD----LVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp HTHHHHHHHHTC--------SSHHHHHHHHHTHHHHHHHHCHH-HHHHT----HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC--------CCHHHHHHHHHHHHHHHHHhCcc-cchhH----HHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 556666665542 38999999999999999875321 01112 223333345688999999999999999
Q ss_pred hccccCCh----hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh---H
Q 002257 401 AHINFSDQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---L 473 (946)
Q Consensus 401 ~~~~f~~~----~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~---l 473 (946)
+... .+. .....+++.+...++|++..||..|+.+|..+..... .+.. .+.++..+..+++..+.+. .
T Consensus 309 ~~~~-~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~---~~~l~p~l~~~l~d~~~~Vr~~a 383 (588)
T 1b3u_A 309 CENL-SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNT---IEHLLPLFLAQLKDECPEVRLNI 383 (588)
T ss_dssp HHTS-CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHH---HHHTHHHHHHHHTCSCHHHHHHH
T ss_pred HHHh-ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHH---HHHHHHHHHHHhCCCchHHHHHH
Confidence 8732 222 3577888999899999999999999999999887642 2222 2344455555555432222 2
Q ss_pred HHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHH
Q 002257 474 VFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLL 553 (946)
Q Consensus 474 ~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~ 553 (946)
..++..++..++.. .+.+.+...+..+.+ ++ ....+..+++++..+...++.. .+.+.++
T Consensus 384 ~~~l~~l~~~~~~~------~~~~~~lp~l~~~~~----d~-----~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~ 443 (588)
T 1b3u_A 384 ISNLDCVNEVIGIR------QLSQSLLPAIVELAE----DA-----KWRVRLAIIEYMPLLAGQLGVE-----FFDEKLN 443 (588)
T ss_dssp HTTCHHHHHHSCHH------HHHHHHHHHHHHHHT----CS-----SHHHHHHHHHHHHHHHHHHCGG-----GCCHHHH
T ss_pred HHHHHHHHHhcCHH------HHHHHHHHHHHHHhc----CC-----CchHHHHHHHHHHHHHHHcCHH-----HHHHHHH
Confidence 23344455444321 112223333333332 22 2344566788888888877532 1234678
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhc-CcccccccCCC
Q 002257 554 PIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR-GTAHFLTCKEP 632 (946)
Q Consensus 554 p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~-~~~~~l~~~~~ 632 (946)
|.+...+..+.....+.++..++.+....++ ...+..++|.+.....+.....-...+.++..+... |++
T Consensus 444 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-------- 514 (588)
T 1b3u_A 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-------- 514 (588)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH--------
Confidence 9988888877777888888888888754221 112336677766544321111222233344333322 111
Q ss_pred chHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002257 633 DYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVI 705 (946)
Q Consensus 633 ~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~ 705 (946)
.+...++..+.+.+.++ ....+..++..+..+...++.. ++.+.+..++.++.+.....++......+
T Consensus 515 ~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~~p~l~~l~~d~d~~vr~~a~~al 582 (588)
T 1b3u_A 515 ITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDVKYFAQEAL 582 (588)
T ss_dssp HHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCHH---HHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhchh---hhHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 24566677777777654 2334557788888888777543 22233333344455555556666554443
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.27 E-value=2.9e-09 Score=126.63 Aligned_cols=510 Identities=15% Similarity=0.130 Sum_probs=288.8
Q ss_pred hhHHHHHh---cCChhHHHHHHHHHHHHHhhc-CCCCchhhHHHHHHhcchh--hH-HHHHHHHHHHHHhcccCCCcCcc
Q 002257 4 DHILVFVA---QVPPLLRVQLGECLKTIIHAD-YPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERT 76 (946)
Q Consensus 4 ~~Ll~~l~---~~~~~ir~ql~~~is~Ia~~D-~P~~Wp~Ll~~l~~~l~s~--~~-~~~L~~L~~i~k~~~~~~~~~~~ 76 (946)
..+++.|. +.+..+|..++.+++.++.+- -+..|+.+++.|.+.+.++ .+ ..|..+|..+++.+.
T Consensus 48 ~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~-------- 119 (588)
T 1b3u_A 48 SELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-------- 119 (588)
T ss_dssp HTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC--------
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC--------
Confidence 34566553 566789999999998877542 2356899999998887655 33 588899999987642
Q ss_pred hHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhHHHHHHHHHHHhcCCCCCCCCC
Q 002257 77 PVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEP 156 (946)
Q Consensus 77 ~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~~~~~il~~~~~~~~~~ 156 (946)
+ ..+.+.++|.+ ..+.+++ ....+..+++++..+. ..++ ....+..++.+..+++.+
T Consensus 120 ~-~~~~~~l~~~l----~~l~~~~-----~~~~R~~a~~~l~~~~-~~~~-----~~~~~~l~~~l~~l~~d~------- 176 (588)
T 1b3u_A 120 P-SDLEAHFVPLV----KRLAGGD-----WFTSRTSACGLFSVCY-PRVS-----SAVKAELRQYFRNLCSDD------- 176 (588)
T ss_dssp H-HHHHHTHHHHH----HHHHTCS-----SHHHHHHHGGGHHHHT-TTSC-----HHHHHHHHHHHHHHHTCS-------
T ss_pred H-HHHHHHHHHHH----HHHhcCC-----CcHHHHHHHHHHHHHH-HhcC-----HHHHHHHHHHHHHHhCCC-------
Confidence 1 12223334433 3333321 2345666666665432 1122 123445566666665431
Q ss_pred CChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHH
Q 002257 157 ADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLIL 236 (946)
Q Consensus 157 ~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l 236 (946)
+ +.+|..+++.+..+....|. ..+.+.+++.+...+.. .++.+...++
T Consensus 177 -~---------~~VR~~a~~~l~~l~~~~~~----------------~~~~~~l~~~l~~~~~d------~~~~vr~~a~ 224 (588)
T 1b3u_A 177 -T---------PMVRRAAASKLGEFAKVLEL----------------DNVKSEIIPMFSNLASD------EQDSVRLLAV 224 (588)
T ss_dssp -C---------HHHHHHHHHHHHHHHHTSCH----------------HHHHHTHHHHHHHHHTC------SCHHHHTTHH
T ss_pred -C---------HHHHHHHHHHHHHHHHHhcH----------------HhHHHHHHHHHHHHhcC------CcHHHHHHHH
Confidence 1 45778899999988775431 11223344444444321 1245555555
Q ss_pred HHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCc
Q 002257 237 QYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGK 316 (946)
Q Consensus 237 ~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~ 316 (946)
..+..++..-.. +...+ .++ |.+. .-.+ +..+..|.+|...+..++...+.
T Consensus 225 ~~l~~l~~~~~~-~~~~~---~~~-----~~l~------------------~~~~--d~~~~vR~~a~~~l~~l~~~~~~ 275 (588)
T 1b3u_A 225 EACVNIAQLLPQ-EDLEA---LVM-----PTLR------------------QAAE--DKSWRVRYMVADKFTELQKAVGP 275 (588)
T ss_dssp HHHHHHHHHSCH-HHHHH---HTH-----HHHH------------------HHHT--CSSHHHHHHHHHTHHHHHHHHCH
T ss_pred HHHHHHHHhCCH-HHHHH---HHH-----HHHH------------------HHcc--CCCHHHHHHHHHHHHHHHHHhCc
Confidence 555544321110 00111 111 2111 0000 12367899999999999987654
Q ss_pred c-cHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHH
Q 002257 317 E-NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAW 395 (946)
Q Consensus 317 ~-~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~ 395 (946)
. ..+.+++.+.+.++. .+|..|.+|..++|.++..+.........+ +-+...+...++++++.+|..+++
T Consensus 276 ~~~~~~l~~~l~~~l~d--------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~d~~~~vR~~a~~ 346 (588)
T 1b3u_A 276 EITKTDLVPAFQNLMKD--------CEAEVRAAASHKVKEFCENLSADCRENVIM-SQILPCIKELVSDANQHVKSALAS 346 (588)
T ss_dssp HHHHHTHHHHHHHHHTC--------SSHHHHHHHHHHHHHHHHTSCTTTHHHHHH-HTHHHHHHHHHTCSCHHHHHHHHT
T ss_pred ccchhHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHHHHhChhhhhhHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3 234556666666643 278999999999999998765321000011 112233333456789999999999
Q ss_pred HHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh---hh
Q 002257 396 VAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---ED 472 (946)
Q Consensus 396 ~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~---e~ 472 (946)
.++.++... ........+++.+...++|++..||..|+.++..++.... .+. +.+.++..+..+++...- ..
T Consensus 347 ~l~~l~~~~-~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~---~~~~~lp~l~~~~~d~~~~vr~~ 421 (588)
T 1b3u_A 347 VIMGLSPIL-GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-IRQ---LSQSLLPAIVELAEDAKWRVRLA 421 (588)
T ss_dssp TGGGGHHHH-CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-HHH---HHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHh-hHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC-HHH---HHHHHHHHHHHHhcCCCchHHHH
Confidence 999997632 1223356778888888999888899999999999988642 111 334555666666544222 22
Q ss_pred HHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhH
Q 002257 473 LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTL 552 (946)
Q Consensus 473 l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l 552 (946)
...++..+...++.+. +...+++.+ .+..+ |+ + ...+...+.++..++..++.. .+.+.+
T Consensus 422 ~~~~l~~l~~~~~~~~--~~~~l~~~l----~~~l~----d~----~-~~Vr~~a~~~l~~l~~~~~~~-----~~~~~l 481 (588)
T 1b3u_A 422 IIEYMPLLAGQLGVEF--FDEKLNSLC----MAWLV----DH----V-YAIREAATSNLKKLVEKFGKE-----WAHATI 481 (588)
T ss_dssp HHHHHHHHHHHHCGGG--CCHHHHHHH----HHGGG----CS----S-HHHHHHHHHHHHHHHHHHCHH-----HHHHHT
T ss_pred HHHHHHHHHHHcCHHH--HHHHHHHHH----HHHhc----CC----c-HHHHHHHHHHHHHHHHHhCch-----hHHHHH
Confidence 4466666777766543 223333333 33332 22 2 234556778888888876532 123567
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCC
Q 002257 553 LPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEP 632 (946)
Q Consensus 553 ~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~ 632 (946)
+|.+...+..........++..++.+....+. ....-.++|.+.+.+.+.....-...+.+|..+...-...++
T Consensus 482 lp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----- 555 (588)
T 1b3u_A 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----- 555 (588)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH-----
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh-----
Confidence 88887776655555666677777776643210 112336777777665532223333455566555543222121
Q ss_pred chHHHHHHHHHHHHc
Q 002257 633 DYQQSLWSMVSSIMA 647 (946)
Q Consensus 633 ~~~~~i~~i~~~ll~ 647 (946)
.+.+...+.++++
T Consensus 556 --~~~~~p~l~~l~~ 568 (588)
T 1b3u_A 556 --QSEVKPILEKLTQ 568 (588)
T ss_dssp --HHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHcC
Confidence 2445556666554
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.18 E-value=9.5e-07 Score=111.60 Aligned_cols=588 Identities=13% Similarity=0.113 Sum_probs=311.4
Q ss_pred hHHHHHHHHHHHHHhhcCC-CCchhhHHHHHHhcchh-hHHHHHHHHHHHHHhcccCCCcCcchHHHHHHHHhHHHHHHH
Q 002257 16 LLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIF 93 (946)
Q Consensus 16 ~ir~ql~~~is~Ia~~D~P-~~Wp~Ll~~l~~~l~s~-~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~L~~i~ 93 (946)
.++.....++...+...++ ..++.+++.+.+.+... ....++.|+..++..+.. . .....+..++|.++...
T Consensus 217 ~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~---~---~~~~~~~~l~~~~~~~~ 290 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDA---Q---RYVNTLLKLIPLVLGLQ 290 (963)
T ss_dssp HHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTG---G---GCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHccccc---c---cCHHHHHHHHHHHHhhH
Confidence 3677777777666665665 46789999999988765 557899999999975421 0 12244555566555443
Q ss_pred HHHhhc-cCCChhHHHHHHHHHHHhHHHHhhhhhhhcC----ChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchh
Q 002257 94 NRLVQI-VNPSLEVADLIKLICKIFWSSIYLEIPKQLL----DPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWW 168 (946)
Q Consensus 94 ~~l~~~-~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~----~~~~l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~~~ 168 (946)
..+... .... . ...+.++++|..+... .+..+. ..+.+..+++.+..+...+.. ...+++.
T Consensus 291 ~~~~~~~~~~d--~-~~~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~---~~~~~~v------- 356 (963)
T 2x19_B 291 EQLRQAVQNGD--M-ETSHGICRIAVALGEN-HSRALLDQVEHWQSFLALVNMIMFCTGIPGH---YPVNETT------- 356 (963)
T ss_dssp HHHHHHHHTTC--H-HHHHHHHHHHHHHHHH-HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSC---TTTTCGG-------
T ss_pred HHHHHHHHCCC--H-HHHHHHHHHHHHHHHH-hHHHHHcCccchHHHHHHHHHHHHHHcCCCC---CCchhhh-------
Confidence 222110 0111 1 3345555666544322 122221 235677788877777654211 0112221
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCChhh-HHHHHHHHHhhHHHHHHHHHHHHHhhhCC----cccCH------HHHHHHHH
Q 002257 169 KVKKWTVHILNRLYTRFGDLKLQNPEN-RAFAQMFQKNYAGKILECHLNLLNRIRVG----GYLPD------RVTNLILQ 237 (946)
Q Consensus 169 k~k~~~~~~l~~l~~~y~~~~~~~~~~-~~f~~~f~~~~~~~~l~~~~~~l~~~~~~----~~~~d------~~~~~~l~ 237 (946)
...++.....+.+.+... .++. ..... ...++++.+++.++..+. +... .|..| .....+.+
T Consensus 357 --~~~~l~fw~~l~~~~~~~---~~~~~~~~~~-~~~~~l~~l~~~ll~~~~-~p~~~~~~~~~~de~~~~~~~r~~~~~ 429 (963)
T 2x19_B 357 --SSLTLTFWYTLQDDILSF---EAEKQAVYQQ-VYRPVYFQLVDVLLHKAQ-FPSDEEYGFWSSDEKEQFRIYRVDISD 429 (963)
T ss_dssp --GGGGHHHHHHHHHHHTTS---CHHHHHHHHH-HHHHHHHHHHHHHHHHHS-CCCHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHHHHhh---hhhhhHHHHH-HHHHHHHHHHHHHHHHHc-CCCcccccCCChhHHHHHHHHHHHHHH
Confidence 123444444454422110 1110 11222 224566666666655542 1110 01111 12223333
Q ss_pred HHHhhccCchhhhhch-hhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCc
Q 002257 238 YLSNSISKNSMYNLLQ-PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGK 316 (946)
Q Consensus 238 fl~~~~~~~~~~~~l~-~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~ 316 (946)
++..++. .+. ..++.+.. .+-.. ++.+. + ...|..|.||...+..+++...+
T Consensus 430 ~L~~~~~------~~~~~~l~~~~~-~l~~~-------l~~~~-----------~--~~~w~~~eaal~al~~i~~~~~~ 482 (963)
T 2x19_B 430 TLMYVYE------MLGAELLSNLYD-KLGRL-------LTSSE-----------E--PYSWQHTEALLYGFQSIAETIDV 482 (963)
T ss_dssp HHHHHHH------HHTHHHHHHHHH-HHHHH-------HHTCC-----------C--SCCHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHH------HccHHHHHHHHH-HHHHH-------HHhcC-----------C--CCchHHHHHHHHHHHHHHhhcCc
Confidence 3333221 111 11111111 11010 01110 1 12366788899999998886543
Q ss_pred ---ccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHH
Q 002257 317 ---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA 393 (946)
Q Consensus 317 ---~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra 393 (946)
..++.+++ .+.+... .+.+.|.+++.++|..+..+.....+ +... .+.++..+.+ |-+|.+|
T Consensus 483 ~~~~~l~~l~~----~l~~l~~-----~~~~vr~~~~~~l~~~~~~l~~~~~~---l~~v-l~~l~~~l~~--~~V~~~A 547 (963)
T 2x19_B 483 NYSDVVPGLIG----LIPRISI-----SNVQLADTVMFTIGALSEWLADHPVM---INSV-LPLVLHALGN--PELSVSS 547 (963)
T ss_dssp SCCSHHHHHHH----HGGGSCC-----CSHHHHHHHHHHHHHTHHHHHHCHHH---HTTT-HHHHHHHTTC--GGGHHHH
T ss_pred hhhHHHHHHHH----HHHhCCC-----CcHHHHHHHHHHHHHHHHHHHhCHHH---HHHH-HHHHHHHhCC--chHHHHH
Confidence 34444443 3333211 15679999999999999887643222 2221 2233344443 7899999
Q ss_pred HHHHHhhhccccCCh--hHHHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhh-
Q 002257 394 AWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV- 468 (946)
Q Consensus 394 ~~~l~~~~~~~f~~~--~~~~~~~~~l~~~L~d~--~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~- 468 (946)
|+.+.++++- .+.. .++..+++.+.+.+... +..++..+..|+..++.... .+...||+..+++.+...++..
T Consensus 548 ~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~ 625 (963)
T 2x19_B 548 VSTLKKICRE-CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLA 625 (963)
T ss_dssp HHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999752 1111 46777777777777643 34588889999999987632 4678888888888888776542
Q ss_pred ----hhh------hHHHHHHHHHHhhCCccc------------------ccHHHHHHHHHHHHHHHHhhccCCCCCCChh
Q 002257 469 ----ENE------DLVFTLETIVDKFGEEMA------------------PYALGLCQNLAAAFWRCMNTAEADEDADDPG 520 (946)
Q Consensus 469 ----~~e------~l~~~L~~iv~~~~~~i~------------------p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~ 520 (946)
+.+ ....+|..++..++.... .-...+.+.+...+.++.+....+
T Consensus 626 ~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 698 (963)
T 2x19_B 626 EEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLND------- 698 (963)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCc-------
Confidence 111 133455566666553221 012234444555554544421111
Q ss_pred hHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHh--cC-CCCCHHHHHHHHHHH
Q 002257 521 ALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF--FS-PTISLEMWSLWPLMM 597 (946)
Q Consensus 521 ~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~--~~-~~i~p~l~~l~~~l~ 597 (946)
....-.++..+..++..++.. +..+-+.+++.+....... . ....+.+++.++. .. +.+.|.+..++..++
T Consensus 699 ~~v~e~~~~~l~~~~~~~~~~---~~~~l~~~~~~l~~~~~~~--~-~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~ 772 (963)
T 2x19_B 699 AQVVEAVCAIFEKSVKTLLDD---FAPMVPQLCEMLGRMYSTI--P-QASALDLTRQLVHIFAHEPAHFPPIEALFLLVT 772 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSST---TGGGHHHHHHHHHHHHHHS--C-CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhccc---ccccHHHHHHHHHHHHHcC--C-ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 112223444555666655432 1122222233222222221 1 2346777777776 44 346676666665555
Q ss_pred HHH----hh---hHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHc
Q 002257 598 EAL----AD---WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 670 (946)
Q Consensus 598 ~~~----~~---~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~ 670 (946)
... .. ...+........+..++.+.+..++. .+..++.++..+...+... +......++..+..++.+.
T Consensus 773 ~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~--~~~~~~~i~~~~~~~l~~~--~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 773 SVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC--ERLDVKAVFQCAVLALKFP--EAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC--TTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhcC
Confidence 543 21 12566777888889999888888873 2223788888777777532 3333456788888888765
Q ss_pred cc--C----chhchHHHHHHHHHHHHh
Q 002257 671 KG--Q----VDHWVEPYLRITVERLRR 691 (946)
Q Consensus 671 ~~--~----~~~~l~~il~~~~~~L~~ 691 (946)
++ . +.++.+.++..++..+..
T Consensus 849 ~~~~~~~~~~~~~~~~l~~~l~~~l~~ 875 (963)
T 2x19_B 849 GEVESVGKVVQEDGRMLLIAVLEAIGG 875 (963)
T ss_dssp TSSCHHHHHTTTSHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 42 1 346777888888877765
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.17 E-value=1.8e-06 Score=108.99 Aligned_cols=569 Identities=11% Similarity=0.080 Sum_probs=293.2
Q ss_pred hHHHHHHHHHHHHHhh-cCC-CCchhhHHHHHHhc------------------chh-hHHHHHHHHHHHHHhcccCCCcC
Q 002257 16 LLRVQLGECLKTIIHA-DYP-EQWPHLLDWVKHNL------------------QDQ-QVYGALFVLRILSRKYEFKSDEE 74 (946)
Q Consensus 16 ~ir~ql~~~is~Ia~~-D~P-~~Wp~Ll~~l~~~l------------------~s~-~~~~~L~~L~~i~k~~~~~~~~~ 74 (946)
.++.+...+++..+.+ ..| +..+.+++.+.+ | .++ ....|+.|+..++.... .
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~--~--- 277 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPD--C--- 277 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSG--G---
T ss_pred hHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcc--c---
Confidence 6788888888877765 344 234568887777 5 122 34689999999997522 1
Q ss_pred cchHHHHHHHHhHHHHHHHHHHhhc-cCCChhHHHHHHHHHHHhHHHHhhhhhhhcC---------ChhhHHHHHHHHHH
Q 002257 75 RTPVYRIVEETFHHLLNIFNRLVQI-VNPSLEVADLIKLICKIFWSSIYLEIPKQLL---------DPNVFNAWMILFLN 144 (946)
Q Consensus 75 ~~~l~~i~~~~~p~L~~i~~~l~~~-~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~---------~~~~l~~w~~~~~~ 144 (946)
......+..++|.++.+....... .....+..+..+.++++|..+... .+..+. ..+.+...++.++.
T Consensus 278 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~ll~ 355 (971)
T 2x1g_F 278 -HNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER-HSTLLLSGITSADPELSILVHRIVQEILH 355 (971)
T ss_dssp -GGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH-THHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccccHHHHHHHHHHHH
Confidence 112345567777777765543211 111110012234445555443321 122221 12456666776666
Q ss_pred HhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 002257 145 VLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVG 224 (946)
Q Consensus 145 il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~ 224 (946)
+...+-. .+.++ .+...++.....+.+.+..... +....... ....++.+.+++.++..+. +...
T Consensus 356 ~~~~~~~---~~~~~---------~v~~~~l~fw~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~ll~~l~~~~~-~p~~ 420 (971)
T 2x1g_F 356 CTDKPGI---YPVEE---------SCSTMALAFWYMLQDEVFAMSN-DEQKHKCW-EYIKPLYAHLTRILVRKSE-QPDE 420 (971)
T ss_dssp HHHCSSC---TTTTC---------TTHHHHHHHHHHHHHHHHC--------CHHH-HHHHHHHHHHHHHHHHHTS-CCCT
T ss_pred HHcCCCC---CCcch---------hhhHHHHHHHHHHHHHHHhccc-ccchHHHH-HHHHHHHHHHHHHHHHHhc-CCCc
Confidence 6544211 01122 2335566666666553311000 00000011 1224455556666555442 2111
Q ss_pred ----cccCH------HHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccc
Q 002257 225 ----GYLPD------RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIE 294 (946)
Q Consensus 225 ----~~~~d------~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~ 294 (946)
.|..+ ..+..+.+++..++..-. +.+-+.+...+...+ ..+..+|
T Consensus 421 ~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~--~~~l~~~~~~l~~~l-----------~~~~~~~------------ 475 (971)
T 2x1g_F 421 KSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN--DYILEILAAMLDEAI-----------ADLQRHP------------ 475 (971)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT--THHHHHHHHHHHHHH-----------HHHHHCT------------
T ss_pred ccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH-----------HhccCCC------------
Confidence 11111 234445555554432111 011111111111111 1111111
Q ss_pred cccCHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHH
Q 002257 295 DLYSPRTASMDFVSELVRKRGK---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 371 (946)
Q Consensus 295 d~~s~R~aa~~ll~~l~~~~~~---~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~ 371 (946)
..|..|.||.-.+..+++...+ ..++.+++ .+.+...+ + ...+.|.+++.++|..++.+.+...+...+-
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~----~l~~l~~~--d-~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR----VLAEIPYE--K-LNVKLLGTALETMGSYCNWLMENPAYIPPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH----HHHHSCTT--T-SCHHHHHHHHHHHHHTHHHHC----CHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH----HHHhcCcc--c-cCHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 2367788999999998876532 34455555 33222111 1 1568999999999999988775444433332
Q ss_pred HHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCC--CCchHHHHHHHHHHHHHhcccc
Q 002257 372 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDP--ELPVRVDSVFALRSFVEACRDL 447 (946)
Q Consensus 372 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~~~~~~l~~~L~d~--~~~V~~~Aa~Al~~~~~~~~~~ 447 (946)
+ .++..+ + |-++.+||+.+.++++- .+.. .++..+++.+.+.++.+ +..++..+..|+..++..-. .
T Consensus 549 ~----~l~~~l-~--~~v~~~A~~al~~l~~~-~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~ 619 (971)
T 2x1g_F 549 N----LLVRGL-N--SSMSAQATLGLKELCRD-CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-P 619 (971)
T ss_dssp H----HHHHHH-H--SSCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-T
T ss_pred H----HHHHHh-C--hHHHHHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-H
Confidence 2 333344 2 77999999999999762 2111 35556666666666653 45688899999999987642 4
Q ss_pred cccccchHHHHHHHHHHHhhh------hh---hhHH---HHHHHHHHhhCC-------------cccccHHHHHHHHHHH
Q 002257 448 NEIRPILPQLLDEFFKLMNEV------EN---EDLV---FTLETIVDKFGE-------------EMAPYALGLCQNLAAA 502 (946)
Q Consensus 448 ~~l~p~l~~il~~Ll~ll~~~------~~---e~l~---~~L~~iv~~~~~-------------~i~p~~~~l~~~L~~~ 502 (946)
+...|++..+++.++..++.. +. ..+. .+|..++..++. .+.|+...+++.+.
T Consensus 620 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-- 697 (971)
T 2x1g_F 620 EEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFK-- 697 (971)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHH--
Confidence 666677766666666555432 11 2233 334444444432 23444444444333
Q ss_pred HHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC
Q 002257 503 FWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 582 (946)
Q Consensus 503 ~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~ 582 (946)
++.+....+ ......++..++.++..++.. +..+.+.++|.+...+++... ...+.+++.++...
T Consensus 698 --~~l~~~~~~-------~~v~e~~~~~~~~~~~~~~~~---~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~ 762 (971)
T 2x1g_F 698 --RIAEMWVEE-------IDVLEAACSAMKHAITNLRSS---FQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMF 762 (971)
T ss_dssp --HHHHHTTTC-------HHHHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTC
T ss_pred --HHHHhcccc-------HHHHHHHHHHHHHHHHhhhhh---ccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHh
Confidence 333321111 122334566777777776542 222345566777666665322 45788888888754
Q ss_pred C---CCCHHHHHHHHHHHHHHh----h-------hHhhhHhhhHHHHHHHHhcCcccccccCCCch-HHHHHHHHHHHHc
Q 002257 583 P---TISLEMWSLWPLMMEALA----D-------WAIDFFPNILVPLDNYISRGTAHFLTCKEPDY-QQSLWSMVSSIMA 647 (946)
Q Consensus 583 ~---~i~p~l~~l~~~l~~~~~----~-------~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~-~~~i~~i~~~ll~ 647 (946)
+ .+.+.+.+++..+...+. . ...+...+....+..++.+.+..++.. +. +..++......+.
T Consensus 763 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s---~~~l~~i~~~~~~~l~ 839 (971)
T 2x1g_F 763 FKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDK---TLAYDRLVFYAQRGMT 839 (971)
T ss_dssp CC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCT---TSCHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCC---cccHHHHHHHHHHHcC
Confidence 2 356667766666544421 1 124566777888899999999988743 55 7888887777775
Q ss_pred CCCCCCcccCchhhHHHHHHHHc
Q 002257 648 DKNLEDGDIEPAPKLIEVVFQNC 670 (946)
Q Consensus 648 ~~~~~~~~~~~a~~ll~~il~~~ 670 (946)
.+ +......++..+..++..-
T Consensus 840 ~~--~~~~~~s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 840 LP--ESGAIRNSIQFLTHFVMQS 860 (971)
T ss_dssp SS--CSSHHHHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHhcC
Confidence 33 2222345777777766653
No 22
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.01 E-value=3.7e-07 Score=104.78 Aligned_cols=322 Identities=12% Similarity=0.152 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHhc-CcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcc
Q 002257 301 TASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 379 (946)
Q Consensus 301 ~aa~~ll~~l~~~~-~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~ 379 (946)
..++..+..++... +....+.+++.+.+.+++.. .++..|++++.+++.++...... .....+.. +.+.+.
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~------~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~~-ll~~l~ 178 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN------STEHMKESTLEAIGYICQDIDPE-QLQDKSNE-ILTAII 178 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT------CCHHHHHHHHHHHHHHHHHSCGG-GTGGGHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHHHHhCCch-hhHhHHHH-HHHHHH
Confidence 45677788888764 33344667777777775410 16789999999999999865210 01112222 233444
Q ss_pred cCCCCC--ccchhHHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 380 PEFSSP--VGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 380 p~l~~~--~~~lr~ra~~~l~~~~~~~---f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
..++++ ++-+|..|+++++.+..+. +........+++.+...+.+++..||..|+.+|..++... .+.+.||+
T Consensus 179 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~ 256 (462)
T 1ibr_B 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY--YQYMETYM 256 (462)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC--GGGCTTTT
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 556665 7899999999999875421 1111112335777777788888899999999999999984 57788999
Q ss_pred H-HHHHHHHHHHhhhhhhhHHHHHH---HHHHhh------CC-----------cccccHHHHHHHHHHHHHHHHhhccCC
Q 002257 455 P-QLLDEFFKLMNEVENEDLVFTLE---TIVDKF------GE-----------EMAPYALGLCQNLAAAFWRCMNTAEAD 513 (946)
Q Consensus 455 ~-~il~~Ll~ll~~~~~e~l~~~L~---~iv~~~------~~-----------~i~p~~~~l~~~L~~~~~~~~~~~~~d 513 (946)
+ .+++.++..++..+.+....+++ .++... .+ ....+.......+...+.+.+...+
T Consensus 257 ~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d-- 334 (462)
T 1ibr_B 257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD-- 334 (462)
T ss_dssp TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcc--
Confidence 9 99998888876644443333333 333321 00 1111222222333333334443221
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCC--CCCHHHHH
Q 002257 514 EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWS 591 (946)
Q Consensus 514 ~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~--~i~p~l~~ 591 (946)
++.+++....+.....++..+...+++ .+.+.++|.+...++.........++..++.+..... .+.+.+..
T Consensus 335 ~d~~~~~~~~r~~a~~~L~~l~~~~~~------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~ 408 (462)
T 1ibr_B 335 ENDDDDDWNPCKAAGVCLMLLATCCED------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408 (462)
T ss_dssp SSCCTTCCSHHHHHHHHHHHHHHHTTT------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTT
T ss_pred cccccccchHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 111122223344566677777776652 2335678888888887767778889999999987542 45666677
Q ss_pred HHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHH
Q 002257 592 LWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVS 643 (946)
Q Consensus 592 l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~ 643 (946)
++|.+...+.+.....-...+.+|..+....+..+.. ++|+..++..+-
T Consensus 409 ~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~---~~~l~~ll~~Ll 457 (462)
T 1ibr_B 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN---DVYLAPLLQCLI 457 (462)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCS---TTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccccc---HHHHHHHHHHHH
Confidence 8888888876322333345566777776654443321 256777666544
No 23
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.96 E-value=5.3e-05 Score=95.31 Aligned_cols=362 Identities=14% Similarity=0.160 Sum_probs=196.9
Q ss_pred cCHHHHHHHHHHHHHHhcC-------cccHHHHH-HHHHHhhcc--c-----CCCCc--------CCCCchhHhHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRG-------KENLQKFI-QFIVGIFKR--Y-----DETPV--------EYKPYRQKDGALLAI 353 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~-------~~~l~~ll-~~i~~~l~~--~-----~~~~~--------~~~~~~~keaal~al 353 (946)
...+..|.+|+.++++.-. ...+..++ ..+...+.= . ..+|. +.+.|-.|.+|..++
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHH
Confidence 4567788899988875321 13444455 344444421 0 01111 123467788999999
Q ss_pred HHHHhhhhcCCcchHHHHHHHHHhcccCC--CCCccchhHHHHHHHHhhhccc--cCCh-h------HHHHHH-HHHHhc
Q 002257 354 GALCDKLKQTEPYKSELERMLVQHVFPEF--SSPVGHLRAKAAWVAGQYAHIN--FSDQ-N------NFRKAL-HSVVSG 421 (946)
Q Consensus 354 g~ia~~l~~~~~~~~~l~~~l~~~v~p~l--~~~~~~lr~ra~~~l~~~~~~~--f~~~-~------~~~~~~-~~l~~~ 421 (946)
..++....+ .....+-+++.+.+-..- .+++...|-.|+..+|.+++.. .... . .+..++ +.++..
T Consensus 386 ~~l~~~~~~--~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~ 463 (960)
T 1wa5_C 386 KELKEKNEV--LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPD 463 (960)
T ss_dssp HHHHHHCHH--HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHH
T ss_pred HHHHHHcch--hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHH
Confidence 988887542 122222233322221000 1344567788899999986420 1100 1 344433 345666
Q ss_pred CCCC---CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhh-----------
Q 002257 422 LRDP---ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKF----------- 484 (946)
Q Consensus 422 L~d~---~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~---e~l~~~L~~iv~~~----------- 484 (946)
|+++ ++.||..||.++.+|.+.. . ..++.++++.+++.+...+. .....++..+++..
T Consensus 464 l~~~~~~~p~vr~~a~~~lg~~~~~~-~----~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~ 538 (960)
T 1wa5_C 464 LTSNNIPHIILRVDAIKYIYTFRNQL-T----KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFH 538 (960)
T ss_dssp HHCSSCSCHHHHHHHHHHHHHTGGGS-C----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSC
T ss_pred hcCCCCCCceehHHHHHHHHHHHhhC-C----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccccc
Confidence 6666 7779999999999998864 1 23677788888777754321 22335666666532
Q ss_pred CCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCC-hhHHHHHHhhHHHHHHHhcccc
Q 002257 485 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL-PHLFVQIEPTLLPIMRRMLTTD 563 (946)
Q Consensus 485 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~-~~~~~~l~~~l~p~i~~~l~~~ 563 (946)
++.+.||+..+++.|...+.+. ...| .+......++++|..++...++. ...+..+.+.+...+..+.++.
T Consensus 539 ~~~l~p~l~~ll~~L~~ll~~~----~~~~----~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~ 610 (960)
T 1wa5_C 539 KEDISNSTEILLKNLIALILKH----GSSP----EKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP 610 (960)
T ss_dssp GGGTTTTHHHHHHHHHHHHHTT----CCCH----HHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhhhHHHHHHHHHHHHHhc----cCCC----CcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 3558899999999888544331 0000 00001125778888888877542 1133344444555555544432
Q ss_pred -hhhHHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHH
Q 002257 564 -GQEVFEEVLEIVSYMTFFS-P-TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWS 640 (946)
Q Consensus 564 -~~~~~~~~l~ll~~l~~~~-~-~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~ 640 (946)
...+..++++.++.++... + .+.+....++|.+...+..+..++.+.+..++...+... ..+- +++..++.
T Consensus 611 ~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~-----~~~~~~~~ 684 (960)
T 1wa5_C 611 SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIP-----ESIKPLAQ 684 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCC-----TTTGGGHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCC-----HHHHHHHH
Confidence 3467778999999998762 2 222233477787777776555677777777777777665 3332 44444444
Q ss_pred HHH--HHHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHH
Q 002257 641 MVS--SIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRI 684 (946)
Q Consensus 641 i~~--~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~ 684 (946)
.+. ..+... . -....+.++..++...+..+.+ +..++..
T Consensus 685 ~l~~~~~~~~~---~-~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~ 725 (960)
T 1wa5_C 685 PLLAPNVWELK---G-NIPAVTRLLKSFIKTDSSIFPD-LVPVLGI 725 (960)
T ss_dssp HHTSGGGGCCT---T-THHHHHHHHHHHHHHHGGGCSC-SHHHHHH
T ss_pred HHcCHHHhcCC---C-CchhHHHHHHHHHHhChHHHHH-HHHHHHH
Confidence 333 333221 1 1122445566666555444332 3444443
No 24
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.78 E-value=0.00062 Score=84.99 Aligned_cols=311 Identities=11% Similarity=0.113 Sum_probs=181.8
Q ss_pred CccchhHHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCC-----CCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 002257 385 PVGHLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLR-----DPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 456 (946)
Q Consensus 385 ~~~~lr~ra~~~l~~~~~~~f~~~---~~~~~~~~~l~~~L~-----d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~ 456 (946)
.+---|-++||++|..++.. .+. ..+.++++.+++.+. |+..+||..+|.++.++.+-.... ..++++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---~~~L~~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WNFLRT 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC---HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc---HHHHHH
Confidence 34567889999999998743 111 467788888888765 344567888899999887753211 246889
Q ss_pred HHHHHHHHHhhhh---hhhHHHHHHHHHHhhCCcc--------cccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHH
Q 002257 457 LLDEFFKLMNEVE---NEDLVFTLETIVDKFGEEM--------APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 525 (946)
Q Consensus 457 il~~Ll~ll~~~~---~e~l~~~L~~iv~~~~~~i--------~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 525 (946)
+++.|+..+.+.. .+....++..+++.++..+ .||..++++.+...+.+ -+ . ....
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~-------l~----~--~~~~ 607 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-------LQ----P--QQVH 607 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-------SC----H--HHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHh-------CC----H--HHHH
Confidence 9999999885431 2345567777777766444 68999988777644321 11 2 2345
Q ss_pred HHHHHHHHHHHhhcCCh---hHHHHHHhhHHHHHHHhccc---ch-----hhHHHHHHHHHHH---HHhcC-CCCCHHHH
Q 002257 526 GCLRAISTILESVSRLP---HLFVQIEPTLLPIMRRMLTT---DG-----QEVFEEVLEIVSY---MTFFS-PTISLEMW 590 (946)
Q Consensus 526 ~~l~ti~~ll~~~~~~~---~~~~~l~~~l~p~i~~~l~~---~~-----~~~~~~~l~ll~~---l~~~~-~~i~p~l~ 590 (946)
.+.+++++++.++.... +.+..+.+.+...+..+.+. +. .+-....+-++.. +.... .++.|.+.
T Consensus 608 ~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~ 687 (1023)
T 4hat_C 608 TFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG 687 (1023)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 78999999999975322 22222223333333333321 10 1123333334433 33222 45667777
Q ss_pred HHHHHHHHHHhhhHhhhH------------------------hhhHHHHHHHHhcCccc-ccccC-CCchHHHHHHHHHH
Q 002257 591 SLWPLMMEALADWAIDFF------------------------PNILVPLDNYISRGTAH-FLTCK-EPDYQQSLWSMVSS 644 (946)
Q Consensus 591 ~l~~~l~~~~~~~~~~~l------------------------~~~~~~L~~~i~~~~~~-~l~~~-~~~~~~~i~~i~~~ 644 (946)
.+|+.+++..... +..+ .++++++..|+.+.++. .+... -++.++.++.-+.+
T Consensus 688 ~i~~~~l~~y~~~-s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~ 766 (1023)
T 4hat_C 688 HIYYNMLQLYRAV-SSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN 766 (1023)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHh
Confidence 8888887664321 1111 12345566677665331 11000 01233333333332
Q ss_pred HHcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHH----HHHh--hhhhHHHHHHHHHHHHHHhhCHHHHHH
Q 002257 645 IMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVE----RLRR--AEKSYLKCLLVQVIADALYYNSSLTLS 718 (946)
Q Consensus 645 ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~----~L~~--~~~~~~~~~~l~v~~~~~~~~~~~~l~ 718 (946)
.. +...+ ..+..+...++.++++.+.+.++.|++.++. -+++ ...+..+..+...+.++..+.|..+++
T Consensus 767 ~~--~~~r~---~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~ 841 (1023)
T 4hat_C 767 NV--PDARD---AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE 841 (1023)
T ss_dssp SC--GGGCC---HHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHT
T ss_pred CC--hhhcc---HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHc
Confidence 21 11111 3578899999999998888888888887764 3333 456777877777777777666666553
No 25
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.58 E-value=4.7e-05 Score=96.74 Aligned_cols=384 Identities=10% Similarity=0.036 Sum_probs=207.1
Q ss_pred ccCHHHHHHHHHHHHHHhcCcc----cHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHH
Q 002257 296 LYSPRTASMDFVSELVRKRGKE----NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 371 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~~~~----~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~ 371 (946)
.|..|.||.-.+.++++...+. .++.+++++.+... ... +. ......+..++.++|..+..+..... .+.
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~-~~~-~~-~~~~~v~~~~~~~lgry~~~~~~~~~---~l~ 539 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV-KKR-GK-DNKAVVASDIMYVVGQYPRFLKAHWN---FLR 539 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT-SSC-SH-HHHHHHHHHHHHHHHHCHHHHHHCHH---HHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh-hhc-cc-cchHHHHHHHHHHHHHHHHHHHhHHH---HHH
Confidence 4677889999999887754332 34555555444221 110 10 01345555688899988877655322 233
Q ss_pred HHHHHhcccCCCCCccchhHHHHHHHHhhhccccCCh----------hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 002257 372 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ----------NNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 372 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~----------~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
..+ +.++..+.++++-+|.+||+.+.++++- .+.. .++..+++.+...+...+..-......|+..++
T Consensus 540 ~vl-~~ll~~l~~~~~~V~~~A~~al~~l~~~-~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 540 TVI-LKLFEFMHETHEGVQDMACDTFIKIVQK-CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp HHH-HHHHHHTTSSCHHHHHHHHHHHHHHHHH-HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333 4455567788999999999999999762 1110 245666666666665433333456677888887
Q ss_pred HhcccccccccchHHHHHHHHH----HHhhh--------hhh------hHHHHHHHHHHhhCCcccccHHHHHHHHHHHH
Q 002257 442 EACRDLNEIRPILPQLLDEFFK----LMNEV--------ENE------DLVFTLETIVDKFGEEMAPYALGLCQNLAAAF 503 (946)
Q Consensus 442 ~~~~~~~~l~p~l~~il~~Ll~----ll~~~--------~~e------~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~ 503 (946)
......+...+++..+++.+.. ++.+. +.+ .+..++.+++..++..+.|++..+...+...|
T Consensus 618 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~ 697 (1049)
T 3m1i_C 618 SEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY 697 (1049)
T ss_dssp HTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7643234566666665555443 33221 111 13456667788889999999888877665444
Q ss_pred HHHHh---hc--cCCCCCCChhh--HHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhccc---chhh-HHHHH
Q 002257 504 WRCMN---TA--EADEDADDPGA--LAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTT---DGQE-VFEEV 571 (946)
Q Consensus 504 ~~~~~---~~--~~d~~~~~~~~--~~~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~---~~~~-~~~~~ 571 (946)
...+. .. ..++.. ...+ .....+...+..+++............ .+.+-|++..++.. .... -.+++
T Consensus 698 ~~~~~~~~~~~~~~g~~~-~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~ 776 (1049)
T 3m1i_C 698 RAVSSMISAQVAAEGLIA-TKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEV 776 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGG-GGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHH
T ss_pred HHHHHHHHHHHHccCchh-hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHH
Confidence 33221 10 001000 0000 111223333334444331111111111 11122222222221 1110 11568
Q ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhh-------hHhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHH
Q 002257 572 LEIVSYMTFFS-PTISLEMWSLWPLMMEALAD-------WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVS 643 (946)
Q Consensus 572 l~ll~~l~~~~-~~i~p~l~~l~~~l~~~~~~-------~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~ 643 (946)
+.+++.++... ..+.|.+..+++.++.+... ...+....+..++..++.+.+..|+. ..+.....+++.+.
T Consensus 777 l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~-~~~~~~~~v~~~~~ 855 (1049)
T 3m1i_C 777 LNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLE-LPPAAFKLFVDAIC 855 (1049)
T ss_dssp HHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHH-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHc-CCHHHHHHHHHHHH
Confidence 88888887654 45667666777777666411 12456677788888888888887762 12233566666555
Q ss_pred HHHcCCCCCCcccCchhhHHHHHHHHccc--C-------chhchHHHHHHHHHHHHh
Q 002257 644 SIMADKNLEDGDIEPAPKLIEVVFQNCKG--Q-------VDHWVEPYLRITVERLRR 691 (946)
Q Consensus 644 ~ll~~~~~~~~~~~~a~~ll~~il~~~~~--~-------~~~~l~~il~~~~~~L~~ 691 (946)
..+..+ +......|++.+..++.+... . +..|...++..++..+.+
T Consensus 856 ~al~~~--~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~ 910 (1049)
T 3m1i_C 856 WAFKHN--NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTD 910 (1049)
T ss_dssp HHHTCC--SHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhCCC--CchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566433 233345677888888877542 1 123445566666666654
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.47 E-value=3.5e-05 Score=87.87 Aligned_cols=344 Identities=9% Similarity=0.059 Sum_probs=193.5
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCc------hhhHHHHHHhcchh----hHHHHHHHHHHHHHhcccCCCcC
Q 002257 5 HILVFVAQVPPLLRVQLGECLKTIIHADYPEQW------PHLLDWVKHNLQDQ----QVYGALFVLRILSRKYEFKSDEE 74 (946)
Q Consensus 5 ~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~W------p~Ll~~l~~~l~s~----~~~~~L~~L~~i~k~~~~~~~~~ 74 (946)
.|++.|.+++..+|...+.++.+++.......+ +.++|.|++.++++ ....|+.+|..++..-. +
T Consensus 24 ~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~----~- 98 (450)
T 2jdq_A 24 DMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS----L- 98 (450)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH----H-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH----H-
Confidence 467777788899999999999998763322212 26889999998765 34688888888886310 1
Q ss_pred cchHHHHH-HHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhhcCChhhH--HHHHHHHHHHhcCCCC
Q 002257 75 RTPVYRIV-EETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVF--NAWMILFLNVLERPVP 151 (946)
Q Consensus 75 ~~~l~~i~-~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l--~~w~~~~~~il~~~~~ 151 (946)
....++ ...+|.|..++ .++ ...++..++.++..+.... |..- +.+ ..-++.+..++...
T Consensus 99 --~~~~~~~~~~i~~L~~lL----~~~-----~~~vr~~a~~~L~~l~~~~-~~~~---~~~~~~~~i~~L~~~l~~~-- 161 (450)
T 2jdq_A 99 --QTRIVIQAGAVPIFIELL----SSE-----FEDVQEQAVWALGNIAGDS-TMCR---DYVLDCNILPPLLQLFSKQ-- 161 (450)
T ss_dssp --HHHHHHHTTHHHHHHHHT----TCS-----CHHHHHHHHHHHHHHHTTC-HHHH---HHHHHTTCHHHHHHHTTSC--
T ss_pred --HHHHHHhCCCHHHHHHHH----cCC-----CHHHHHHHHHHHHHHccCC-HHHH---HHHHHCCCHHHHHHHhcCC--
Confidence 111121 23455554443 322 3456777888877664321 2110 000 01234445555421
Q ss_pred CCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHH
Q 002257 152 SEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRV 231 (946)
Q Consensus 152 ~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~ 231 (946)
.+ +.++..++.++..+... ..|.. ... + ...+++....++.. .++.+
T Consensus 162 -----~~---------~~v~~~a~~~L~~l~~~-~~~~~-~~~-------~----~~~~l~~L~~~l~~------~~~~v 208 (450)
T 2jdq_A 162 -----NR---------LTMTRNAVWALSNLCRG-KSPPP-EFA-------K----VSPCLNVLSWLLFV------SDTDV 208 (450)
T ss_dssp -----CC---------HHHHHHHHHHHHHHHCC-SSSCC-CGG-------G----TGGGHHHHHHHTTC------CCHHH
T ss_pred -----CC---------HHHHHHHHHHHHHHhCC-CCCCC-CHH-------H----HHHHHHHHHHHHcc------CCHHH
Confidence 11 45677788887766642 11221 111 1 12233333444421 23577
Q ss_pred HHHHHHHHHhhccCch-hhhhc-h-hhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHH
Q 002257 232 TNLILQYLSNSISKNS-MYNLL-Q-PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 308 (946)
Q Consensus 232 ~~~~l~fl~~~~~~~~-~~~~l-~-~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~ 308 (946)
...++..+..++.... ..+.+ . +.++.++. .+. + .....|..|...|.
T Consensus 209 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-----ll~-----------~-------------~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 209 LADACWALSYLSDGPNDKIQAVIDAGVCRRLVE-----LLM-----------H-------------NDYKVVSPALRAVG 259 (450)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHH-----HTT-----------C-------------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHH-----HHC-----------C-------------CchhHHHHHHHHHH
Confidence 7777778877765432 11111 1 11222222 111 0 11345777888888
Q ss_pred HHHHhcCcc---cH-HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCC
Q 002257 309 ELVRKRGKE---NL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS 384 (946)
Q Consensus 309 ~l~~~~~~~---~l-~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~ 384 (946)
.++...+.. ++ ..+++.+.+.++. .++..|.+|+.++|.++.+..+. ...-++.-+...++..+.+
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------~~~~vr~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSS--------PKESIKKEACWTISNITAGNRAQ--IQTVIDANIFPALISILQT 329 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTC--------SSHHHHHHHHHHHHHHTTSCHHH--HHHHHHTTHHHHHHHHHHH
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcC--------CCHHHHHHHHHHHHHHHcCCHHH--HHHHHHCCCHHHHHHHHhc
Confidence 877643211 11 0234445555543 26899999999999998652210 0000100112233334456
Q ss_pred CccchhHHHHHHHHhhhccccCChhHH-----HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 385 PVGHLRAKAAWVAGQYAHINFSDQNNF-----RKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 385 ~~~~lr~ra~~~l~~~~~~~f~~~~~~-----~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
+++-+|..|||+++.++... +++.. ..+++.+++.+.+++..|+..|+.||.+++...
T Consensus 330 ~~~~v~~~a~~~L~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 330 AEFRTRKEAAWAITNATSGG--SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCC--CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 78899999999999997521 22222 247888999999888899999999999999864
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.46 E-value=9.3e-07 Score=92.07 Aligned_cols=180 Identities=8% Similarity=0.029 Sum_probs=131.7
Q ss_pred CCchhHhHHHHHHHH-HHhhhhcC----CcchHHHHHHHHHhcccCC-CCCccchhHHHHHHHHhhhccccC-C--h-hH
Q 002257 341 KPYRQKDGALLAIGA-LCDKLKQT----EPYKSELERMLVQHVFPEF-SSPVGHLRAKAAWVAGQYAHINFS-D--Q-NN 410 (946)
Q Consensus 341 ~~~~~keaal~alg~-ia~~l~~~----~~~~~~l~~~l~~~v~p~l-~~~~~~lr~ra~~~l~~~~~~~f~-~--~-~~ 410 (946)
.+|+.|.+|+..++. +.+++.+. .+|. .+ ...+.+.+ +++++.+|..||.++|+++.. ++ + . .+
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~----~~-~~~L~~~l~~D~n~~v~~~A~~al~~la~~-l~~~~f~~~y 101 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS----NL-LGIYGHIIQKDANIQAVALAAQSVELICDK-LKTPGFSKDY 101 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH----HH-HHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HCTTTSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHH----HH-HHHHHHHhccCCCHHHHHHHHHHHHHHHHh-cccccccHHH
Confidence 399999999999999 88764332 2332 22 23445566 588999999999999999762 22 1 1 47
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhC--
Q 002257 411 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKFG-- 485 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~---e~l~~~L~~iv~~~~-- 485 (946)
+..+++.++..+.|....|+..|..|+..++...+ +....+|++.+++.|+..++.... +....+|.+++...+
T Consensus 102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 88999999999999888999999999999999852 333445599999999999976432 335566677777766
Q ss_pred -CcccccH-HHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcC
Q 002257 486 -EEMAPYA-LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR 540 (946)
Q Consensus 486 -~~i~p~~-~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~ 540 (946)
..+.||. ..+++.|.. ++. | .....+....++++.+.+.+++
T Consensus 181 ~~~l~~~l~~~iip~l~~----~l~----D-----~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQ----IVN----D-----TQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp SHHHHHHHTTTHHHHHHH----HHT----C-----SSHHHHHHHHHHHHHHHHHHCS
T ss_pred chhHHHHHHHHHHHHHHH----Hhc----C-----CCHHHHHHHHHHHHHHHHHhCH
Confidence 3466777 778777764 332 2 2344566788889999888875
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.30 E-value=1.9e-05 Score=92.37 Aligned_cols=299 Identities=13% Similarity=0.108 Sum_probs=170.1
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHH-----HHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQ-----KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 371 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~-----~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~ 371 (946)
...|..|...|..++...+..... .+++.+.+.+... .++..++.|+.+++.++.+-.+.... -++
T Consensus 88 ~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~-------~~~~v~~~A~~~L~~l~~~~~~~~~~--~~~ 158 (528)
T 4b8j_A 88 NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE-------DFPQLQFEAAWALTNIASGTSENTKV--VID 158 (528)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT-------TCHHHHHHHHHHHHHHHTSCHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC-------CCHHHHHHHHHHHHHHhCCCHHHHHH--HHh
Confidence 345777777777776543211111 1233344555431 14788999999999999752221000 000
Q ss_pred HHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhH---HH--HHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhcc
Q 002257 372 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN---FR--KALHSVVSGL-RDPELPVRVDSVFALRSFVEACR 445 (946)
Q Consensus 372 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~---~~--~~~~~l~~~L-~d~~~~V~~~Aa~Al~~~~~~~~ 445 (946)
.-....++..+.++++-+|..|+|+++.++.. ++.. .. .+++.+++.| .+.+..|+..|+.+|.+++....
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGD---SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT---CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC---ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 01123344456678899999999999999752 2222 22 2678899999 46788899999999999998742
Q ss_pred cccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHH-HHHHHHHHHHhhccCCCCCCChhhHHH
Q 002257 446 DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAA 524 (946)
Q Consensus 446 ~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~ 524 (946)
..-......++..|..++...+.+....++..+..... .-......+.. .++..+..++. ++ + ....
T Consensus 236 --~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~----~~----~-~~v~ 303 (528)
T 4b8j_A 236 --QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD-GTNDKIQAVIEAGVCPRLVELLL----HP----S-PSVL 303 (528)
T ss_dssp --CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS-SCHHHHHHHHHTTCHHHHHHHTT----CS----C-HHHH
T ss_pred --CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHcCHHHHHHHHHc----CC----C-hhHH
Confidence 22223446677788888876555555555555433222 11111111111 12223334443 21 1 2233
Q ss_pred HHHHHHHHHHHHhhcCChhHHHH-HHhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHH
Q 002257 525 VGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEAL 600 (946)
Q Consensus 525 ~~~l~ti~~ll~~~~~~~~~~~~-l~~~l~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~ 600 (946)
...+.+++.+... .+..... +...++|.+..+|... ......++...++.+....+..-..+. .++|.++..+
T Consensus 304 ~~a~~~L~nl~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL 380 (528)
T 4b8j_A 304 IPALRTVGNIVTG---DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHHHTTS---CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
Confidence 3455555555442 2222222 3355788888888877 678888899999998753211101111 4567777776
Q ss_pred hhhHhhhHhhhHHHHHHHHhcC
Q 002257 601 ADWAIDFFPNILVPLDNYISRG 622 (946)
Q Consensus 601 ~~~~~~~l~~~~~~L~~~i~~~ 622 (946)
.+.........+.+|.++...+
T Consensus 381 ~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 381 QTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHcCC
Confidence 6433455556677777777664
No 29
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.28 E-value=3.2e-05 Score=91.55 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=106.2
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
.+.|+.+.-.+..+++..++ .. -.+.+.+.+-.+++ |...|-.|+.++|.+... .+.+.+..
T Consensus 63 ~~~Krl~yl~l~~~~~~~~e-~~----~l~~n~l~kdL~~~----n~~ir~~AL~~L~~i~~~---------~~~~~l~~ 124 (591)
T 2vgl_B 63 LELKKLVYLYLMNYAKSQPD-MA----IMAVNSFVKDCEDP----NPLIRALAVRTMGCIRVD---------KITEYLCE 124 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSHH-HH----HTTHHHHGGGSSSS----SHHHHHHHHHHHHTCCSG---------GGHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCch-HH----HHHHHHHHHHcCCC----CHHHHHHHHHHHHcCChH---------HHHHHHHH
Confidence 45577776667776665433 21 12223333323322 778899999999887522 22333445
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHH--HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR--KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~--~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
.+...+.+++|++|..|+++++++... .++... .+++.+.+.|.|++..|+..|+.||..++.... .....+..
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~---~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~-~~~~~~l~ 200 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDI---NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP-NSNLLDLN 200 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHS---SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC-SCCSCCCH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhh---ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC-Cccchhcc
Confidence 566677899999999999999999762 233444 588999999999999999999999999887642 22145566
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHH
Q 002257 455 PQLLDEFFKLMNEVENEDLVFTLE 478 (946)
Q Consensus 455 ~~il~~Ll~ll~~~~~e~l~~~L~ 478 (946)
+..+..|++.+.+.+.-....++.
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~ 224 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILD 224 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHH
Confidence 777888887776544333334443
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.23 E-value=0.00025 Score=80.63 Aligned_cols=343 Identities=11% Similarity=0.061 Sum_probs=184.3
Q ss_pred cCHHHHHHHHHHHHHHhcCcc----cHH--HHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKE----NLQ--KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 370 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~----~l~--~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l 370 (946)
...|..|...|..++...... .+. .+++.+.+.+++. .++..+..|..+++.++.+-.+.... -+
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~--~~ 104 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK-------ENCTLQFESAWVLTNIASGNSLQTRI--VI 104 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT-------TCHHHHHHHHHHHHHHHSSCHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC-------CCHHHHHHHHHHHHHHhcCCHHHHHH--HH
Confidence 346777888888776522111 111 2344444555431 15688889999999888642110000 00
Q ss_pred HHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHH-----HHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhc
Q 002257 371 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKALHSVVSGLRD-PELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 371 ~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~-----~~~~~~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~ 444 (946)
..-..+.++..++++++-+|..|+|+++.++.. .++.. ..+++.+++.+.+ .+..||..|+.+|.+++...
T Consensus 105 ~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD---STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 111223344456778999999999999999762 22221 2467888999984 67889999999999999764
Q ss_pred ccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHH-HHHHHHHHHHHhhccCCCCCCChhhHH
Q 002257 445 RDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALA 523 (946)
Q Consensus 445 ~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~ 523 (946)
. +..-...+..++..|+.++...+.+....++..+..-.. .-.+....+. ..++..+..++. ++ + ...
T Consensus 182 ~-~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~----~~----~-~~v 250 (450)
T 2jdq_A 182 S-PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD-GPNDKIQAVIDAGVCRRLVELLM----HN----D-YKV 250 (450)
T ss_dssp S-SCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS-SSHHHHHHHHHTTTHHHHHHHTT----CS----C-HHH
T ss_pred C-CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC-CCcHHHHHHHHcCcHHHHHHHHC----CC----c-hhH
Confidence 1 111122335566777777765444333344443332222 1111111111 112223334443 21 1 122
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHH-HHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHH
Q 002257 524 AVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEAL 600 (946)
Q Consensus 524 ~~~~l~ti~~ll~~~~~~~~~~~~-l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~ 600 (946)
....+.++..+... .+..... +...++|.+...++.+.......++..++.+....+.....+. .++|.+...+
T Consensus 251 ~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l 327 (450)
T 2jdq_A 251 VSPALRAVGNIVTG---DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL 327 (450)
T ss_dssp HHHHHHHHHHHTTS---CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC---ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 33445555555432 2322222 2345888888889887777888899999888753211111121 4667777776
Q ss_pred hhhHhhhHhhhHHHHHHHHhcCcccccccCCCchH-HHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcc
Q 002257 601 ADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQ-QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCK 671 (946)
Q Consensus 601 ~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~-~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~ 671 (946)
.+...+.-...+.+|.++...+...... ..+ ..++..+..++.+. +......++..+..++...+
T Consensus 328 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~----~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 328 QTAEFRTRKEAAWAITNATSGGSAEQIK----YLVELGCIKPLCDLLTVM--DSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHCCHHHHH----HHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCHHHHH----HHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhch
Confidence 6333444456667777776653221110 111 12444455566543 22334456666776666543
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.21 E-value=6.9e-06 Score=96.14 Aligned_cols=341 Identities=13% Similarity=0.141 Sum_probs=182.7
Q ss_pred CHHHHHHHHHHHHHHhcCcccH-----HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHH
Q 002257 298 SPRTASMDFVSELVRKRGKENL-----QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 372 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~~~~l-----~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~ 372 (946)
..|..|...|..++...+.... ..+++.+.+.+... .++..+..|..+++.++.+-.+..... +..
T Consensus 102 ~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~-------~~~~v~~~A~~~L~~l~~~~~~~~~~~--~~~ 172 (530)
T 1wa5_B 102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-------QPEMLQLEAAWALTNIASGTSAQTKVV--VDA 172 (530)
T ss_dssp HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-------SCHHHHHHHHHHHHHHTTSCHHHHHHH--HHT
T ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC-------CCHHHHHHHHHHHHHHhCCCHHHHHHH--HHC
Confidence 3466667777766543211111 11234444555431 267889999999999987522100000 000
Q ss_pred HHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhH-----HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccc
Q 002257 373 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN-----FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL 447 (946)
Q Consensus 373 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~-----~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~ 447 (946)
-....++..+.++++-+|..|+|+++.++.. +++. ...+++.++..|.+.+..|+..|+.+|.+++.... +
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~ 248 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGD---STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK-P 248 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS-S
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---CccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC-C
Confidence 0011222234457889999999999999752 1211 12468888999988888899999999999998641 1
Q ss_pred cccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHH-HHHHHHHHHHhhccCCCCCCChhhHHHHH
Q 002257 448 NEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAAVG 526 (946)
Q Consensus 448 ~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 526 (946)
..-......++..|+.++...+.+....++..+..-.... ......+.. .++..+..++. ++ + ......
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~----~~----~-~~v~~~ 318 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKRLVELLS----HE----S-TLVQTP 318 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHGGG----CS----C-HHHHHH
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhcCcHHHHHHHHC----CC----C-hhhHHH
Confidence 1112344566777777776654444444444443222110 001111111 12233334443 21 1 223334
Q ss_pred HHHHHHHHHHhhcCChhHHHH-HHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhh
Q 002257 527 CLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADW 603 (946)
Q Consensus 527 ~l~ti~~ll~~~~~~~~~~~~-l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~ 603 (946)
++.+++.+... .+..... +...++|.+...|..........++..++.+....+..-..+. .++|.++..+...
T Consensus 319 a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 395 (530)
T 1wa5_B 319 ALRAVGNIVTG---NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395 (530)
T ss_dssp HHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcC---CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence 55555555432 2222222 3356889999999887777888899999888753321111121 4667777776533
Q ss_pred HhhhHhhhHHHHHHHHhcCcc--cccccCCCchH--HHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcc
Q 002257 604 AIDFFPNILVPLDNYISRGTA--HFLTCKEPDYQ--QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCK 671 (946)
Q Consensus 604 ~~~~l~~~~~~L~~~i~~~~~--~~l~~~~~~~~--~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~ 671 (946)
....-...+.+|.++...+.. ... .++ ..++..+..++.+. +......++..+..++...+
T Consensus 396 ~~~v~~~a~~aL~~l~~~~~~~~~~~-----~~l~~~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 396 EYKTKKEACWAISNASSGGLQRPDII-----RYLVSQGCIKPLCDLLEIA--DNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCTHHH-----HHHHHTTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCcHHHH-----HHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhh
Confidence 345556677778887766532 111 111 11333444455432 22233456666776666543
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.20 E-value=2.4e-05 Score=81.16 Aligned_cols=184 Identities=12% Similarity=0.175 Sum_probs=137.3
Q ss_pred ccCHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHhhc-ccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHH
Q 002257 296 LYSPRTASMDFVSELVRKRGK---ENLQKFIQFIVGIFK-RYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 371 (946)
Q Consensus 296 ~~s~R~aa~~ll~~l~~~~~~---~~l~~ll~~i~~~l~-~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~ 371 (946)
.|..|.+|...|..+++..++ ..+..+++.+...+. . .+...+.+|+.++|.++..+.. .+...++
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd--------~~~~V~~~a~~~l~~la~~l~~--~~~~~~~ 97 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD--------SNVVLVAMAGKCLALLAKGLAK--RFSNYAS 97 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHHHHGG--GGHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHHHHHHhh--hHHHHHH
Confidence 488899999999999886322 233566777767764 3 2778999999999999988754 2322333
Q ss_pred HHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 002257 372 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 451 (946)
Q Consensus 372 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~ 451 (946)
. +...++..+.++.+.+|..|+-++..+.... ....+++.+...|.+.+..||..++..|..++..........
T Consensus 98 ~-ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-----~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~ 171 (242)
T 2qk2_A 98 A-CVPSLLEKFKEKKPNVVTALREAIDAIYAST-----SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK 171 (242)
T ss_dssp H-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred H-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence 3 3455666678899999999999999886632 256788999999998888999999999999887753234578
Q ss_pred cchHHHHHHHHHHHhhhhhh---hHHHHHHHHHHhhCCc-ccccHHHH
Q 002257 452 PILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEE-MAPYALGL 495 (946)
Q Consensus 452 p~l~~il~~Ll~ll~~~~~e---~l~~~L~~iv~~~~~~-i~p~~~~l 495 (946)
++++.++..|..++++...+ ....++..++..++++ +.||...+
T Consensus 172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 99999999999999765443 3457777777777765 66766655
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.16 E-value=4.8e-05 Score=88.87 Aligned_cols=261 Identities=15% Similarity=0.091 Sum_probs=140.8
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCc-cchhHHHHHHHHhhhccccCChhHHH-----HHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFR-----KAL 415 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~-~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~ 415 (946)
++..+..|..+++.++..-.. .+...-+..-....++..+.+++ +-+|..|+|+++.++.. +++... .++
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~---~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERS-PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG---TSENTKVVIDHGAV 162 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSS-CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHhcCCCC-chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CHHHHHHHHhCCcH
Confidence 677888888888887654221 11110010001122223345554 89999999999999762 222222 378
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhh-hhhhHHHHHHHHHHhhCCcccccHH
Q 002257 416 HSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEV-ENEDLVFTLETIVDKFGEEMAPYAL 493 (946)
Q Consensus 416 ~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~-~~e~l~~~L~~iv~~~~~~i~p~~~ 493 (946)
+.++..|.+++..|+..|+.||.+++.... ....+.. ..++..|+.++... +.+....++..+..-....-.+- .
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~--~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~ 239 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA--NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-F 239 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH--TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-H
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH--CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-H
Confidence 889999999888999999999999987632 1111111 12566677777433 23333344444433222211111 1
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHH-HHhhHHHHHHHhcccchhhHHHHHH
Q 002257 494 GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVL 572 (946)
Q Consensus 494 ~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~-l~~~l~p~i~~~l~~~~~~~~~~~l 572 (946)
.+...++..+.+++. ++ + ......++.++..+.. ..+..... +...++|.+..+|..........++
T Consensus 240 ~~~~~~l~~L~~lL~----~~----~-~~v~~~a~~aL~~l~~---~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 240 EQTRPALPALARLIH----SN----D-EEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp HHHTTHHHHHHHHTT----CC----C-HHHHHHHHHHHHHHTS---SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC----CC----C-HHHHHHHHHHHHHHHc---CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 122223333334443 11 1 1122234444444432 22222222 3446788888999887778888899
Q ss_pred HHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhh-HhhhHhhhHHHHHHHHhc
Q 002257 573 EIVSYMTFFSPTISLEMW--SLWPLMMEALADW-AIDFFPNILVPLDNYISR 621 (946)
Q Consensus 573 ~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~-~~~~l~~~~~~L~~~i~~ 621 (946)
..++.+....+.....+. .++|.+...+... ........+.+|.++...
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 999988753321111111 3466666666533 334445566677776543
No 34
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.13 E-value=0.00033 Score=83.18 Aligned_cols=110 Identities=23% Similarity=0.170 Sum_probs=78.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
|...|-.|+.++|.++.. .+-+-+...|...+.+++|++|..|+++++++... .++....+++.+...
T Consensus 120 n~~vr~lAL~~L~~i~~~---------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~---~p~~v~~~~~~l~~l 187 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGSS---------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK---VPELMEMFLPATKNL 187 (618)
T ss_dssp SSHHHHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH---CGGGGGGGGGGTTTS
T ss_pred CHhHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH---ChHHHHHHHHHHHHH
Confidence 678899999999998743 22222344555566789999999999999999762 345666778888888
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFK 463 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ 463 (946)
|.|.++.|+..|+.+|..++.... ....+.+.++.+++.|-.
T Consensus 188 L~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~ 230 (618)
T 1w63_A 188 LNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKN 230 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHH
T ss_pred hCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876531 112344545555544443
No 35
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.10 E-value=0.00067 Score=80.18 Aligned_cols=245 Identities=10% Similarity=0.093 Sum_probs=149.0
Q ss_pred HHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCc
Q 002257 286 VRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP 365 (946)
Q Consensus 286 i~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~ 365 (946)
++++.+.. +....+.+...++..+.. |..+-. .+..+...+++ ++...|..++.+++.++..-.
T Consensus 18 i~~~L~~~-~~~~k~~~~~kli~~~~~--G~d~~~-~~~~vi~l~~s--------~~~~~Krl~yl~l~~~~~~~~---- 81 (591)
T 2vgl_B 18 LKAELNNE-KKEKRKEAVKKVIAAMTV--GKDVSS-LFPDVVNCMQT--------DNLELKKLVYLYLMNYAKSQP---- 81 (591)
T ss_dssp HHHHTTSS-CHHHHHHHHHHHHHHHHT--TCCCGG-GHHHHHHTTSS--------SCHHHHHHHHHHHHHHHHHSH----
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHHHC--CCChHH-HHHHHHHHhCC--------CCHHHHHHHHHHHHHHcccCc----
Confidence 45554432 223345555565544433 333322 23333345443 277889999999998876521
Q ss_pred chHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc
Q 002257 366 YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 445 (946)
Q Consensus 366 ~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~ 445 (946)
++-....+.+..++++++|.+|+.|+.++|.+. .++....+++.+.+++.|+++.||..|+.|+..++...
T Consensus 82 ---e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~- 152 (591)
T 2vgl_B 82 ---DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN- 152 (591)
T ss_dssp ---HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-
T ss_pred ---hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-
Confidence 222334567777899999999999999997775 45788889999999999999999999999999999853
Q ss_pred cccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCc----ccccHHHHHHHHHHHHHHHHhhccCCCCCCChhh
Q 002257 446 DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE----MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 521 (946)
Q Consensus 446 ~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~----i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 521 (946)
++.+.. ..+++.+..++++.+......++..+.+...+. ..+.....+.+|...+.. .+ +
T Consensus 153 -p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~------~~-------~ 216 (591)
T 2vgl_B 153 -AQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE------CT-------E 216 (591)
T ss_dssp -CCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH------CC-------H
T ss_pred -hhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC------CC-------c
Confidence 343322 357788888887554444455556555544332 234444555555432211 11 2
Q ss_pred HHHHHHHHHHHHHHHhhcC-ChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002257 522 LAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 579 (946)
Q Consensus 522 ~~~~~~l~ti~~ll~~~~~-~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~ 579 (946)
.....+++++ ..+.. .+. ....++|.+...+++......-++...+..+.
T Consensus 217 ~~q~~il~~l----~~l~~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 217 WGQIFILDCL----SNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp HHHHHHHHHH----HTSCCCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHH----HHhCCCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 3333444433 33322 221 12356777777777766667767777666654
No 36
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.09 E-value=0.0098 Score=74.09 Aligned_cols=115 Identities=15% Similarity=0.237 Sum_probs=88.2
Q ss_pred HHHHHHHhhhccccCC--------hhHHHHHHHHHHhcCC--CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHH
Q 002257 392 KAAWVAGQYAHINFSD--------QNNFRKALHSVVSGLR--DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 461 (946)
Q Consensus 392 ra~~~l~~~~~~~f~~--------~~~~~~~~~~l~~~L~--d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~L 461 (946)
..+-.+|.+++ .|++ .+.+.++++.++..|. ..+..||..++.++++++.. ....+.|+++++++.+
T Consensus 671 ~~i~al~~lak-gf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~--lg~~~~p~lp~~i~~l 747 (980)
T 3ibv_A 671 CSLMAIGNFAK-GFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV--VGPDMLPKVPQLISIL 747 (980)
T ss_dssp HHHHHHHHHHH-TSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT--THHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHhc-cCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH--ccHhHHHHHHHHHHHH
Confidence 44566677765 2422 1456677777766665 45688999999999999998 5677999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhh
Q 002257 462 FKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT 509 (946)
Q Consensus 462 l~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~ 509 (946)
+.-.+..+.-.....+..++..|+.++.|+...+...+......+.++
T Consensus 748 l~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~ 795 (980)
T 3ibv_A 748 LNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSA 795 (980)
T ss_dssp HHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 965455555667789999999999999999888888887766666653
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.06 E-value=0.00012 Score=85.49 Aligned_cols=303 Identities=11% Similarity=0.070 Sum_probs=157.2
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCC-ccchhHHHHHHHHhhhccccCChhHH-----HHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP-VGHLRAKAAWVAGQYAHINFSDQNNF-----RKAL 415 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~-~~~lr~ra~~~l~~~~~~~f~~~~~~-----~~~~ 415 (946)
++..+..|+.+++.+...-. ..+...-+..-+...++..+.++ ++-+|..|+|+++.++.. +++.. ..++
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~-~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~---~~~~~~~~~~~g~i 175 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREH-RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG---TSAQTKVVVDADAV 175 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSS-SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhCCCC-CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---CHHHHHHHHHCCCH
Confidence 56777788888877654311 11111011111123334456665 899999999999999762 12222 2457
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCc-ccccHH
Q 002257 416 HSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE-MAPYAL 493 (946)
Q Consensus 416 ~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~-i~p~~~ 493 (946)
+.+++.|.+++..||..|+.+|.+++.... ....+.. ..++..|+.++...+.+....++..+..-.... -.+ ..
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~ 252 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ--CNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP-DW 252 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC-CH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH--cCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC-cH
Confidence 888888888888999999999999997631 1111111 135666777776633333344444443332211 011 11
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHHHHH
Q 002257 494 GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVL 572 (946)
Q Consensus 494 ~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~~~l 572 (946)
.....++..+.+++. ++ + .......+.++..+... .++....+ ...++|.+...+..........++
T Consensus 253 ~~~~~~l~~L~~lL~----~~----d-~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~ 320 (530)
T 1wa5_B 253 SVVSQALPTLAKLIY----SM----D-TETLVDACWAISYLSDG---PQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320 (530)
T ss_dssp HHHGGGHHHHHHHTT----CC----C-HHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHc----CC----C-HHHHHHHHHHHHHHhCC---CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHH
Confidence 122233334445543 21 1 12233344445444432 23323333 346788888888877777888899
Q ss_pred HHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCcccccccCCCchH-HHHHHHHHHHHcCC
Q 002257 573 EIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQ-QSLWSMVSSIMADK 649 (946)
Q Consensus 573 ~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~-~~i~~i~~~ll~~~ 649 (946)
..++.+....+.....+. .++|.+...+...........+.+|.++...+++..- ..+ ..++..+.+++.+.
T Consensus 321 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~-----~~~~~~~l~~L~~lL~~~ 395 (530)
T 1wa5_B 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-----AVIDANLIPPLVKLLEVA 395 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH-----HHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH-----HHHHCCCHHHHHHHHhcC
Confidence 999888754321111111 3566666666533233444555666665543332210 011 11223333344332
Q ss_pred CCCCcccCchhhHHHHHHHHc
Q 002257 650 NLEDGDIEPAPKLIEVVFQNC 670 (946)
Q Consensus 650 ~~~~~~~~~a~~ll~~il~~~ 670 (946)
+...+..|+..+..+....
T Consensus 396 --~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 396 --EYKTKKEACWAISNASSGG 414 (530)
T ss_dssp --CHHHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHHHhcC
Confidence 2223445666776666653
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.95 E-value=5.9e-05 Score=78.14 Aligned_cols=172 Identities=12% Similarity=0.107 Sum_probs=119.2
Q ss_pred CCchhHhHHHHHHHHHHhhhhc--CCcchHHHHHHHHHhcccCCC-CCccchhHHHHHHHHhhhccccCC--hhHHHHHH
Q 002257 341 KPYRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSD--QNNFRKAL 415 (946)
Q Consensus 341 ~~~~~keaal~alg~ia~~l~~--~~~~~~~l~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~--~~~~~~~~ 415 (946)
++|+.|.+|+..++.+..+..+ ...+. .+ .+.+...+. ++++-+|..||.++|.++.. +.+ ..+...++
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~-~i----~~~L~~~l~kd~~~~V~~~a~~~l~~la~~-l~~~~~~~~~~il 100 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYG-AL----VSALKKVITKDSNVVLVAMAGKCLALLAKG-LAKRFSNYASACV 100 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCH-HH----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHH-HH----HHHHHHHhccCCCHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHH
Confidence 3899999999999999887432 22232 33 233444564 78999999999999999752 212 15788999
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhCC--cccc
Q 002257 416 HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGE--EMAP 490 (946)
Q Consensus 416 ~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~~--~i~p 490 (946)
+.++..+.|++..||..|+.||..++... .++.+++.++..++...... ....|..++..++. ...+
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYAST--------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 99999999999999999999999998763 25678888888876543322 34445555555542 2456
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhc
Q 002257 491 YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 539 (946)
Q Consensus 491 ~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~ 539 (946)
+...+++.|.. ++. | .+...+....++++.+...++
T Consensus 173 ~l~~l~p~l~~----~l~----D-----~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 173 LLKLLTTSLVK----TLN----E-----PDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHH----HHT----S-----SCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----Hhc----C-----CChHHHHHHHHHHHHHHHHcC
Confidence 66666666653 332 2 223455667888888888776
No 39
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00025 Score=73.56 Aligned_cols=183 Identities=9% Similarity=0.080 Sum_probs=138.1
Q ss_pred CCCccchhHHHHHHHHh-hhc-c-ccCC-hhHHHHHHHHHHhcC-CCCCCchHHHHHHHHHHHHHhcccc-cccc-cchH
Q 002257 383 SSPVGHLRAKAAWVAGQ-YAH-I-NFSD-QNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDL-NEIR-PILP 455 (946)
Q Consensus 383 ~~~~~~lr~ra~~~l~~-~~~-~-~f~~-~~~~~~~~~~l~~~L-~d~~~~V~~~Aa~Al~~~~~~~~~~-~~l~-p~l~ 455 (946)
++...--|..|...++. +.+ . .... ...+..++..+.+.| .|++..|+..|+.||..++.. .. ..+. ||..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~--l~~~~f~~~y~~ 103 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK--LKTPGFSKDYVS 103 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HCTTTSCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccccccHHHHH
Confidence 46778888888888888 753 1 1221 224467899999999 699999999999999999977 45 6898 9999
Q ss_pred HHHHHHHHHHhhhhh---hhHHHHHHHHHHhhCCccccc--HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHH
Q 002257 456 QLLDEFFKLMNEVEN---EDLVFTLETIVDKFGEEMAPY--ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRA 530 (946)
Q Consensus 456 ~il~~Ll~ll~~~~~---e~l~~~L~~iv~~~~~~i~p~--~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~t 530 (946)
.++..++..+++... +....++..+++...+ ..++ ...++..|.. .++ + .++....+++.+
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~----~l~----~-----k~~~vk~~al~~ 169 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILE----HMK----H-----KTPQIRMECTQL 169 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHH----HTT----C-----SSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHH----HHc----C-----CChHHHHHHHHH
Confidence 999999999987432 4466788888887754 2343 7778877763 232 1 234567788999
Q ss_pred HHHHHHhhcCChhHHHHHH-hhHHHHHHHhcccchhhHHHHHHHHHHHHHhc
Q 002257 531 ISTILESVSRLPHLFVQIE-PTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 581 (946)
Q Consensus 531 i~~ll~~~~~~~~~~~~l~-~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~ 581 (946)
|..++...+..|..+.... ..++|.+..++.....+..+.+.+.++.+...
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999988665555565666 78999999999887888999999999988754
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.83 E-value=0.0014 Score=77.55 Aligned_cols=176 Identities=13% Similarity=0.078 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHh
Q 002257 298 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 377 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~ 377 (946)
..+.+-..++.-.. .|.++-.. +..+...+++ ++...|-.+|.+++.++..-. ++--...+.
T Consensus 54 ~k~~~l~Kli~l~~--~G~d~s~~-~~~vvkl~~s--------~~~~~Krl~YL~l~~~~~~~~-------e~~~L~iN~ 115 (621)
T 2vgl_A 54 SKKKYVCKLLFIFL--LGHDIDFG-HMEAVNLLSS--------NRYTEKQIGYLFISVLVNSNS-------ELIRLINNA 115 (621)
T ss_dssp HHHHHHHHHHHHHH--HSCCCCSC-HHHHHHGGGC--------SCHHHHHHHHHHHHHSCCCCH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCCCchh-HHHHHHHhcC--------CCHHHHHHHHHHHHHHccCCc-------HHHHHHHHH
Confidence 34444455544333 24433322 3333345554 278999999999998886521 333445667
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcC--CCCCCchHHHHHHHHHHHHHhcccccccccchH
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL--RDPELPVRVDSVFALRSFVEACRDLNEIRPILP 455 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L--~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~ 455 (946)
+..++++++|++|+-|+.++|.+. .++....+++.+.++| .|.++.||-.|+.|+.+++... ++.+.+ +
T Consensus 116 l~kDl~~~n~~ir~lALr~L~~i~-----~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~--~ 186 (621)
T 2vgl_A 116 IKNDLASRNPTFMGLALHCIANVG-----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPM--G 186 (621)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHC-----CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCC--C
T ss_pred HHHhcCCCCHHHHHHHHHHhhccC-----CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCc--h
Confidence 777889999999999999998885 3678999999999999 8999999999999999999963 444442 3
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhh---CCcccccHHHHHHHHH
Q 002257 456 QLLDEFFKLMNEVENEDLVFTLETIVDKF---GEEMAPYALGLCQNLA 500 (946)
Q Consensus 456 ~il~~Ll~ll~~~~~e~l~~~L~~iv~~~---~~~i~p~~~~l~~~L~ 500 (946)
.+++.+..++++.+......++..+.+.. .+.+.++.+.++..|.
T Consensus 187 ~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~ 234 (621)
T 2vgl_A 187 DWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLS 234 (621)
T ss_dssp SCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 45666666776544433334444333322 2334445555544443
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.70 E-value=0.0093 Score=70.65 Aligned_cols=238 Identities=14% Similarity=0.104 Sum_probs=129.9
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
.+.|.+|...|..++...++ .+......+...+.. ++...|..|+-+++.++.. .+ .. .+- .
T Consensus 327 ~~vr~~aL~~L~~i~~~~p~-~~~~~~~~i~~~l~d--------~d~~Ir~~alelL~~l~~~---~n-v~-~iv----~ 388 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQTDHN-AVQRHRSTIVDCLKD--------LDVSIKRRAMELSFALVNG---NN-IR-GMM----K 388 (618)
T ss_dssp TTTHHHHHHHHHHHHHHHHH-HHGGGHHHHHHGGGS--------SCHHHHHHHHHHHHHHCCS---SS-TH-HHH----H
T ss_pred CchHHHHHHHHHHHHhhCHH-HHHHHHHHHHHHccC--------CChhHHHHHHHHHHHHccc---cc-HH-HHH----H
Confidence 46788888888888877643 333333444455543 2556777788877777653 11 11 111 1
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHH
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 456 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~ 456 (946)
.+...+.+..+-+|..++..+|+.+. +|.+ ....+++.+++.|.+....|+..++.++..++... +.++ ..
T Consensus 389 eL~~~l~~~d~e~r~~~v~~I~~la~-k~~~--~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~---p~l~---~~ 459 (618)
T 1w63_A 389 ELLYFLDSCEPEFKADCASGIFLAAE-KYAP--SKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS---VEMH---AY 459 (618)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHH-SSCC--CHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS---CSTH---HH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH-HhCc--cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC---hhHH---HH
Confidence 22222334567789999999999986 4432 46677888888887655556677888888888763 2222 23
Q ss_pred HHHHHHHHHhh-hhhhhHHHHHHHHHHhhCCccc--------cc---HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHH
Q 002257 457 LLDEFFKLMNE-VENEDLVFTLETIVDKFGEEMA--------PY---ALGLCQNLAAAFWRCMNTAEADEDADDPGALAA 524 (946)
Q Consensus 457 il~~Ll~ll~~-~~~e~l~~~L~~iv~~~~~~i~--------p~---~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~ 524 (946)
++..|+.++.. ...+.+..++--++..|++.+. |. -..+...| ..+.+.. . +.+...
T Consensus 460 ~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~--~-----~~~~vr 528 (618)
T 1w63_A 460 TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDIL----ESVLISN--M-----STSVTR 528 (618)
T ss_dssp HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHH----HHHHHST--T-----CCHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHH----HHHHhcc--C-----CCHHHH
Confidence 56666666654 3344444444344444433221 21 11122222 2222210 0 122344
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002257 525 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 579 (946)
Q Consensus 525 ~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~ 579 (946)
..++.++..+.... |+. .+.+..++....++...|+-+-+.+.|..+.
T Consensus 529 ~~~lta~~Kl~~~~---~~~----~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 529 GYALTAIMKLSTRF---TCT----VNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHHTTC---SSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---cch----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 55666665555432 322 2344455555555555677777777776654
No 42
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.58 E-value=0.073 Score=63.90 Aligned_cols=237 Identities=9% Similarity=-0.001 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHH
Q 002257 319 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 398 (946)
Q Consensus 319 l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 398 (946)
+..+.+.+...|.+.. .+...++-|+-+++.++..-..+..+..+ .. +...++..++++++-++..|.|.++
T Consensus 375 i~~Lv~~l~~lL~~~~------~d~~v~~~AveaLayLS~~~~vk~~lv~d-~g-~Ip~LV~LL~s~d~~i~~~al~~L~ 446 (810)
T 3now_A 375 ALKLAEACRRFLIKPG------KDKDIRRWAADGLAYLTLDAECKEKLIED-KA-SIHALMDLARGGNQSCLYGVVTTFV 446 (810)
T ss_dssp HHHHHHHHHHHHHCSS------CCSSHHHHHHHHHHHHTTSHHHHHHHHHC-HH-HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC------CCHHHHHHHHHHHHHHhCCcHHHHHHHHc-cc-hHHHHHHHhCCCChHHHHHHHHHHH
Confidence 5566777777776521 13456788888888877653211111110 11 2233344456678889999999999
Q ss_pred hhhccc--------------cCCh-----------hHHH---------HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 399 QYAHIN--------------FSDQ-----------NNFR---------KALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 399 ~~~~~~--------------f~~~-----------~~~~---------~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
..+.-. |..+ +... -+++.++++|.+++..||..|+.||.++..+.
T Consensus 447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~ 526 (810)
T 3now_A 447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK 526 (810)
T ss_dssp HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH
T ss_pred HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH
Confidence 997521 1000 0111 25788899999888899999999999998654
Q ss_pred ccccccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhCCcc-ccc--HHHHHHHHHHHHHHHHhhccCCCCCCC
Q 002257 445 RDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEM-APY--ALGLCQNLAAAFWRCMNTAEADEDADD 518 (946)
Q Consensus 445 ~~~~~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~~~i-~p~--~~~l~~~L~~~~~~~~~~~~~d~~~~~ 518 (946)
+....+... ..+..|+.++..-.... ...+|..+........ .+- ....++.|+ +++.. +.
T Consensus 527 ~~r~~Vv~~--Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv----~LL~~---~~---- 593 (810)
T 3now_A 527 ELRGKVVQE--GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLL----NLLQQ---DC---- 593 (810)
T ss_dssp HHHHHHHHT--THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHH----HTTST---TS----
T ss_pred HHHHHHHHC--CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHH----HHhCC---CC----
Confidence 322322221 34556666665533332 3344555443322221 110 112233333 44431 11
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCChhHHHH-HHhhHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 002257 519 PGALAAVGCLRAISTILESVSRLPHLFVQ-IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 580 (946)
Q Consensus 519 ~~~~~~~~~l~ti~~ll~~~~~~~~~~~~-l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~ 580 (946)
........+.+++.+... .++.... ++.-.+|.+...+..+.......+..+++.+..
T Consensus 594 -~~l~~~eAl~AL~NLa~~---~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 594 -TALENFESLMALTNLASM---NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp -CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 111111223344444332 2222222 334568888888877777788899999999874
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.53 E-value=0.0056 Score=72.45 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=86.7
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCC--CCCccchhHHHHHHHHhhhccccCChhHHH--HHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF--SSPVGHLRAKAAWVAGQYAHINFSDQNNFR--KALHS 417 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l--~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~--~~~~~ 417 (946)
|...|-.|++++|.+... .+-+-+...|...+ .+++|++|.+|+.++.++... .|+... ..++.
T Consensus 124 n~~ir~lALr~L~~i~~~---------e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~---~p~~~~~~~~~~~ 191 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGSR---------EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT---SPDLVPMGDWTSR 191 (621)
T ss_dssp CHHHHHHHHHHHHHHCCH---------HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---CGGGCCCCSCHHH
T ss_pred CHHHHHHHHHHhhccCCH---------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh---ChhhcCchhHHHH
Confidence 678899999999998642 22233445555566 789999999999999998762 344444 67888
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh
Q 002257 418 VVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 418 l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
+.++|.|+++-|+..|+.++..++... ++.+.++++.+++.|.+++..
T Consensus 192 l~~lL~d~d~~V~~~a~~~l~~i~~~~--~~~~~~~~~~~~~~L~~ll~~ 239 (621)
T 2vgl_A 192 VVHLLNDQHLGVVTAATSLITTLAQKN--PEEFKTSVSLAVSRLSRIVTS 239 (621)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHC--HHHHTTHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHhC
Confidence 888899999999999999999998873 456788888888888877643
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.52 E-value=0.0041 Score=71.92 Aligned_cols=260 Identities=16% Similarity=0.157 Sum_probs=143.9
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHH-----HHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRK-----ALH 416 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~-----~~~ 416 (946)
+...+..|..+|+.++.+-.+.... -++.-....++..|.++++-+|..|+|+++.++.- .++.... .++
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~~--vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d---~~~~r~~v~~~G~i~ 188 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTKA--VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD---GSAFRDLVIKHGAID 188 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHH--HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHH--HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHcCChH
Confidence 4567788889999998653221100 01111123344456789999999999999999751 2322222 467
Q ss_pred HHHhcCCCCCC-----chHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCc--cc
Q 002257 417 SVVSGLRDPEL-----PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE--MA 489 (946)
Q Consensus 417 ~l~~~L~d~~~-----~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~--i~ 489 (946)
.++..|.+++. .+...|+.++.+++........ ......++..|..++...+.+....+...+..-.... ..
T Consensus 189 ~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 189 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp HHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCC-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhH-HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhH
Confidence 78888875432 2456788899998886532221 1234667788888887666555555544443322111 00
Q ss_pred ccH--HHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHH-HHHHhhHHHHHHHhcccchhh
Q 002257 490 PYA--LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLF-VQIEPTLLPIMRRMLTTDGQE 566 (946)
Q Consensus 490 p~~--~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~-~~l~~~l~p~i~~~l~~~~~~ 566 (946)
... ..+++.|+ .++.. + + .......+.++..+... ++... .-+....+|.+...+.+....
T Consensus 268 ~~i~~~g~i~~Lv----~lL~~----~----~-~~v~~~al~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~ 331 (510)
T 3ul1_B 268 EMVVKKGVVPQLV----KLLGA----T----E-LPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTN 331 (510)
T ss_dssp HHHHTTTCHHHHH----HHHTC----S----C-HHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGCC-CTTCSSHH
T ss_pred HHHHhcccchhhh----hhhcC----C----C-hhhhhHHHHHHHHhhcC---CHHHHHHHhhccchHHHHHHhcCCCHH
Confidence 000 01122333 33431 1 1 12233445555555432 22222 223455677777888877777
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCc
Q 002257 567 VFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGT 623 (946)
Q Consensus 567 ~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~ 623 (946)
...++.-.++.+....+.....+. .++|.+...+.+...+.-.....+|.|+...+.
T Consensus 332 v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~ 390 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC
Confidence 888888888888653321111122 466777777764334555566677777776654
No 45
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.50 E-value=0.082 Score=64.32 Aligned_cols=365 Identities=11% Similarity=0.066 Sum_probs=175.8
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCchhhHHHHHHhcchh---hHHHHHHHHHHHHHhcccCCCcCcchHHHH
Q 002257 5 HILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEERTPVYRI 81 (946)
Q Consensus 5 ~Ll~~l~~~~~~ir~ql~~~is~Ia~~D~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i 81 (946)
.+++.|.+++..+|..++..+..+.+...+ ...+|.|+++|.++ ....|+.+|..+++.-. .-..+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~---~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~--------~~~~i 187 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDDAELA---TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA--------SRHAI 187 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH--------HHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhHHHHH---hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh--------hHHHH
Confidence 466677778888888888888877655444 34666666767655 34688899999987421 01111
Q ss_pred H--HHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhh-hcCChhhHHHHHHHHHHHhcCCCCCCCCCCC
Q 002257 82 V--EETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QLLDPNVFNAWMILFLNVLERPVPSEGEPAD 158 (946)
Q Consensus 82 ~--~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~-~~~~~~~l~~w~~~~~~il~~~~~~~~~~~d 158 (946)
. ...++.|..++.. .. ..+++..++++++.+....-+. .+... .-++.+..++..+ +
T Consensus 188 ~~~~~~i~~Lv~~L~~---~~-----d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~----g~I~~Lv~lL~~~--------~ 247 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQN---TN-----DVETARCTSGTLHNLSHHREGLLAIFKS----GGIPALVNMLGSP--------V 247 (780)
T ss_dssp TTCHHHHHHHHHHHHH---CC-----CHHHHHHHHHHHHHHHTSHHHHHHHHHT----THHHHHHHHTTCS--------C
T ss_pred HhccChHHHHHHHHcC---CC-----CHHHHHHHHHHHHHHhCCchhHHHHHHc----CCHHHHHHHHcCC--------C
Confidence 1 2345555555442 11 2455777777777654331111 11000 2344555665431 2
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHH
Q 002257 159 PEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQY 238 (946)
Q Consensus 159 ~~~~~~~~~~k~k~~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~f 238 (946)
..++..++.+|..+...+.. .+.. +.. ...+.....++.. . +.++...++..
T Consensus 248 ---------~~v~~~A~~aL~nLa~~~~~-------~~~~---v~~---~g~v~~Lv~lL~~---~---~~~v~~~a~~a 299 (780)
T 2z6g_A 248 ---------DSVLFHAITTLHNLLLHQEG-------AKMA---VRL---AGGLQKMVALLNK---T---NVKFLAITTDC 299 (780)
T ss_dssp ---------HHHHHHHHHHHHHHHHHSTT-------HHHH---HHH---TTHHHHHHHGGGC---C---CHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhCCChh-------hHHH---HHH---cCCHHHHHHHHhc---C---CHHHHHHHHHH
Confidence 34678888888888765321 0000 100 1233333333322 1 12333333222
Q ss_pred HHhhc-cCchhhhhc-h-hhHHHHHHHH--------------HhcccccChhhHh-hhhcChHHHHHhhccccccccCHH
Q 002257 239 LSNSI-SKNSMYNLL-Q-PRLDVLLFEI--------------VFPLMCFNDNDQK-LWDEDPHEYVRKGYDIIEDLYSPR 300 (946)
Q Consensus 239 l~~~~-~~~~~~~~l-~-~~l~~li~~i--------------i~p~l~lt~~d~e-~we~Dp~efi~~~~d~~~d~~s~R 300 (946)
+...+ .+......+ . ..++.++..+ ++.+++...+... ..+..--.-+..-... .....+
T Consensus 300 L~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~--~~~~~~ 377 (780)
T 2z6g_A 300 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLV 377 (780)
T ss_dssp HHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTC--SCHHHH
T ss_pred HHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcC--CchHHH
Confidence 22211 111111111 1 1111111100 0011111111000 0000000111111111 112345
Q ss_pred HHHHHHHHHHHHhcCc-ccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCc-c--hHHHHHHHHH
Q 002257 301 TASMDFVSELVRKRGK-ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP-Y--KSELERMLVQ 376 (946)
Q Consensus 301 ~aa~~ll~~l~~~~~~-~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~-~--~~~l~~~l~~ 376 (946)
..|...|..|+...++ .....+++.+.+.+.. .+|..++.|..+++.++.+-.+... + ..-++
T Consensus 378 ~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~--------~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~----- 444 (780)
T 2z6g_A 378 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS--------DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE----- 444 (780)
T ss_dssp HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH-----
T ss_pred HHHHHHHHHHhccchhhhhhhhHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH-----
Confidence 5567778888765432 2234556666666653 3789999999999999765211000 0 00111
Q ss_pred hcccCCCC-Cc-cchhHHHHHHHHhhhccccCChhH------HHHHHHHHHhcCCCCCC-chHHHHHHHHHHHHHhc
Q 002257 377 HVFPEFSS-PV-GHLRAKAAWVAGQYAHINFSDQNN------FRKALHSVVSGLRDPEL-PVRVDSVFALRSFVEAC 444 (946)
Q Consensus 377 ~v~p~l~~-~~-~~lr~ra~~~l~~~~~~~f~~~~~------~~~~~~~l~~~L~d~~~-~V~~~Aa~Al~~~~~~~ 444 (946)
.++..+.+ .. .-+|..|+|+++.++... ...+. ....++.+++.|.+++. .|+..||.+|.++....
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~-~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRH-QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 11122222 22 379999999999996421 11111 12357888999987665 79999999999998653
No 46
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.49 E-value=0.0058 Score=76.06 Aligned_cols=306 Identities=8% Similarity=0.113 Sum_probs=172.1
Q ss_pred ccchhHHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCCCC-----CCchHHHHHHHHHHHHHhcccccccccchHHH
Q 002257 386 VGHLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDP-----ELPVRVDSVFALRSFVEACRDLNEIRPILPQL 457 (946)
Q Consensus 386 ~~~lr~ra~~~l~~~~~~~f~~~---~~~~~~~~~l~~~L~d~-----~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~i 457 (946)
+.--+-++||.+|..+... .++ ..+.++++.+++....+ ..+|+...+..+.++.+--. .. ..+++++
T Consensus 492 sW~~lea~~~aigaIag~~-~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~--~h-~~~L~~v 567 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAM-HEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR--AH-WKFLKTV 567 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH--HC-HHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcC-CcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH--hC-HHHHHHH
Confidence 4557889999999998632 221 46778888887765322 23455556667776655421 11 3478889
Q ss_pred HHHHHHHHhhhhh---hhHHHHHHHHHHhhCCcc--------cccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHH
Q 002257 458 LDEFFKLMNEVEN---EDLVFTLETIVDKFGEEM--------APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVG 526 (946)
Q Consensus 458 l~~Ll~ll~~~~~---e~l~~~L~~iv~~~~~~i--------~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 526 (946)
++.|+..+.+... +....++..+.+..+..+ .||..++...+...+..+ .+.....
T Consensus 568 l~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-------------~~~~~~~ 634 (1073)
T 3gjx_A 568 VNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-------------QPQQVHT 634 (1073)
T ss_dssp HHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-------------CHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-------------CHHHHHH
Confidence 9999998876433 334577888887776554 678888887776443221 1224567
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhhHHHHH----HHhccc---c-----hhhHHHHHHHHHHHHH---hc-CCCCCHHHH
Q 002257 527 CLRAISTILESVSRLPHLFVQIEPTLLPIM----RRMLTT---D-----GQEVFEEVLEIVSYMT---FF-SPTISLEMW 590 (946)
Q Consensus 527 ~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i----~~~l~~---~-----~~~~~~~~l~ll~~l~---~~-~~~i~p~l~ 590 (946)
+.++++.++.++.... ....+.+.++|.. ..+.++ + ..+.+....-++.... .. ..+.-|.+.
T Consensus 635 lyeav~~vi~~~p~~~-~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~ 713 (1073)
T 3gjx_A 635 FYEAVGYMIGAQTDQT-VQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLG 713 (1073)
T ss_dssp HHHHHHHHHTTCCCHH-HHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHH
Confidence 8999999999875421 1222333333333 333321 0 0122344444444322 22 135566666
Q ss_pred HHHHHHHHHHhhh-----------Hh---h---------hHhhhHHHHHHHHhcCccc--ccccCCCchHHHHHHHHHHH
Q 002257 591 SLWPLMMEALADW-----------AI---D---------FFPNILVPLDNYISRGTAH--FLTCKEPDYQQSLWSMVSSI 645 (946)
Q Consensus 591 ~l~~~l~~~~~~~-----------~~---~---------~l~~~~~~L~~~i~~~~~~--~l~~~~~~~~~~i~~i~~~l 645 (946)
.+|+.+++..... |. . .=.++++++..|+.++.+. +...=-++.++.++.-+.+.
T Consensus 714 ~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~ 793 (1073)
T 3gjx_A 714 RIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRN 793 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcC
Confidence 7777776553210 00 0 0112334566677766431 11000023444444444432
Q ss_pred HcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHH----HHh--hhhhHHHHHHHHHHHHHHhhCHH
Q 002257 646 MADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVER----LRR--AEKSYLKCLLVQVIADALYYNSS 714 (946)
Q Consensus 646 l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~----L~~--~~~~~~~~~~l~v~~~~~~~~~~ 714 (946)
. +...+ ..+..++.+++.+++..+.+.++.|++.++.. +.. ...+..|..+.....++..+.+.
T Consensus 794 ~--p~~r~---~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~ 863 (1073)
T 3gjx_A 794 V--PAARE---PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFP 863 (1073)
T ss_dssp C--GGGCC---THHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred C--ccccc---HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhH
Confidence 1 11112 35889999999999998889999988887653 322 44566666665555554444443
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.42 E-value=0.0066 Score=70.55 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=143.6
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHH-----HHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRK-----ALH 416 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~-----~~~ 416 (946)
+...+..|..+++.++.+-.+.... -++.-....++..+.++++-+|..|+|++|.++.. +++.... +++
T Consensus 133 ~~~~q~~Aa~aL~nia~~~~~~~~~--vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~---~~~~r~~i~~~g~i~ 207 (529)
T 3tpo_A 133 CSPIQFESAWALTNIASGTSEQTKA--VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA---GSAFRDLVIKHGAID 207 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHH--HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHH--HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc---CHHHHHHHHHcCCcH
Confidence 5667777888999998763221000 01111223344457789999999999999999752 3333332 467
Q ss_pred HHHhcCCCCCC-----chHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCC--ccc
Q 002257 417 SVVSGLRDPEL-----PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE--EMA 489 (946)
Q Consensus 417 ~l~~~L~d~~~-----~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~--~i~ 489 (946)
.++..|.+++. .+...|+.++.+++........ ......++..|..++...+.+....+...+...... +..
T Consensus 208 ~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~ 286 (529)
T 3tpo_A 208 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI 286 (529)
T ss_dssp HHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhh-HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhH
Confidence 78888875432 2455788899998876532221 123456778888888766655555554444322211 000
Q ss_pred ccH--HHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHH-HHHHhhHHHHHHHhcccchhh
Q 002257 490 PYA--LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLF-VQIEPTLLPIMRRMLTTDGQE 566 (946)
Q Consensus 490 p~~--~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~-~~l~~~l~p~i~~~l~~~~~~ 566 (946)
... ..+++.|+ .++. .+ + .......+.++..++.. ++... .-+..-.+|.+..++......
T Consensus 287 ~~v~~~g~i~~Lv----~lL~----~~----~-~~v~~~a~~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~ 350 (529)
T 3tpo_A 287 EMVVKKGVVPQLV----KLLG----AT----E-LPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTN 350 (529)
T ss_dssp HHHHTTTCHHHHH----HHHT----CS----C-HHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGHHHHTTCSSHH
T ss_pred HHHHhccchHHHH----HHhc----CC----C-hhHHHHHHHHHHHHHcc---chHHHHHHhhcccHHHHHHHHcCCCHH
Confidence 000 01222333 3333 11 1 12233455555555432 22222 223455778888888887778
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhhhHHHHHHHHhcCc
Q 002257 567 VFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGT 623 (946)
Q Consensus 567 ~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~ 623 (946)
...++.-.++.+....+.....+. .++|.+...+.+...+.-...+.+|.|+...+.
T Consensus 351 i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 351 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 888888888888754321111111 356667666654334444555666777665543
No 48
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.36 E-value=0.11 Score=62.34 Aligned_cols=402 Identities=8% Similarity=0.010 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHhC--CCCC-CChhhHHHHHHHHHhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhccCchh
Q 002257 172 KWTVHILNRLYTRFG--DLKL-QNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSM 248 (946)
Q Consensus 172 ~~~~~~l~~l~~~y~--~~~~-~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~~ 248 (946)
..++.++.+++.-+. ..+. ..++ +...+.. ..-+..++...+.++.. ..++-.-+-.+++.+...+-++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~l~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~ 183 (810)
T 3now_A 110 STAQFCLQTILNALSGLKNKPDSKPD-KELCTRN-NREIDTLLTCLVYSITD----RTISGAARDGVIELITRNVHYTAL 183 (810)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTCCCC-HHHHHHT-HHHHHHHHHHHHHHHTC----TTSCHHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHHhccccccccCCc-HHHHhhh-hhHHHHHHHHHHHHhhc----cccChhhHHHHHHHHHHhCCcccc
Confidence 456777777776652 1221 1111 2222222 11233344444444432 335667778888888876644421
Q ss_pred ----hhhchhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcC-----cccH
Q 002257 249 ----YNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG-----KENL 319 (946)
Q Consensus 249 ----~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~-----~~~l 319 (946)
|-....-+..++...- .+. .+.. | ... .-..+.|..|.-++..+-+..+ +..-
T Consensus 184 ~~~~~~~~~~g~~~~l~v~~--~~~-------~~~~-~-----~~~---~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~ 245 (810)
T 3now_A 184 EWAERLVEIRGLCRLLDVCS--ELE-------DYKY-E-----SAM---DITGSSSTIASVCLARIYENMYYDEAKARFT 245 (810)
T ss_dssp THHHHHHHTTHHHHHHHHHT--CCS-------SSCC-S-----SCC---CCCTTHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred ccccchhhHhhHHHHHHHHh--cCc-------cccc-c-----ccC---CCChhHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 1111223444444211 000 0000 0 011 1235567777777777766543 2333
Q ss_pred HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHh
Q 002257 320 QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQ 399 (946)
Q Consensus 320 ~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~ 399 (946)
..+-.|+...+... +.-.+=-|..+++.+..+..+.......-+.+ ...+++.++++++.++..|+|.++.
T Consensus 246 ~~~~~~~~~~~~~~--------~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~-v~~li~Ll~s~~~~~q~~A~~al~~ 316 (810)
T 3now_A 246 DQIDEYIKDKLLAP--------DMESKVRVTVAITALLNGPLDVGNQVVAREGI-LQMILAMATTDDELQQRVACECLIA 316 (810)
T ss_dssp HHHHHHHHHHHSSC--------CHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTH-HHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC--------ChHhHHHHHHHHHHHhcCCHHHHHHHHhccch-HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45556777766441 22223334666666665543311000000122 2344456678899999999999999
Q ss_pred hhccc-cCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--cc-cccc-cchHHHHHHHHHHHhhh--hhhh
Q 002257 400 YAHIN-FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DL-NEIR-PILPQLLDEFFKLMNEV--ENED 472 (946)
Q Consensus 400 ~~~~~-f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~--~~-~~l~-p~l~~il~~Ll~ll~~~--~~e~ 472 (946)
.+.-. .+. -....-.+.+...+.+.+..+|..|+.+|+++-.... .+ ..+. .-+.+++..|.+++... +.+.
T Consensus 317 aa~~~~~R~-~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v 395 (810)
T 3now_A 317 ASSKKDKAK-ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDI 395 (810)
T ss_dssp HTTSHHHHH-TTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSH
T ss_pred HcCCcHHHH-HHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHH
Confidence 86521 111 1222334888888887777899999999999864321 11 2222 22678888888888775 5666
Q ss_pred HHHHHHHHHHhhC-Ccccc-cH--HHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCC-------
Q 002257 473 LVFTLETIVDKFG-EEMAP-YA--LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL------- 541 (946)
Q Consensus 473 l~~~L~~iv~~~~-~~i~p-~~--~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~------- 541 (946)
...+++.+..-.. ..... +. ...++.|+ .+.++ .+ .....+++.+++.|...-...
T Consensus 396 ~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV----~LL~s--~d-------~~i~~~al~~L~NLt~~~d~q~~~~~l~ 462 (810)
T 3now_A 396 RRWAADGLAYLTLDAECKEKLIEDKASIHALM----DLARG--GN-------QSCLYGVVTTFVNLCNAYEKQEMLPEMI 462 (810)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH----HHHHT--TC-------GGGHHHHHHHHHHHTTCSCCCCCCCSCG
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHccchHHHHH----HHhCC--CC-------hHHHHHHHHHHHHHcCCchhhhhhHHHH
Confidence 6677766643321 11111 11 12333343 34432 11 123346677777776532100
Q ss_pred ----------h---------hH----HHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHH
Q 002257 542 ----------P---------HL----FVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLM 596 (946)
Q Consensus 542 ----------~---------~~----~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l 596 (946)
| .+ -.-++.-.+|.+..++........+.+...+..+..... .-..+. ...|.|
T Consensus 463 ~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~-~r~~Vv~~Gaip~L 541 (810)
T 3now_A 463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQEGGVKAL 541 (810)
T ss_dssp GGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHH
T ss_pred HHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHH
Confidence 0 01 112344578999999988878888999999998873211 111122 356777
Q ss_pred HHHHhhhHhhhHhhhHHHHHHHHhc
Q 002257 597 MEALADWAIDFFPNILVPLDNYISR 621 (946)
Q Consensus 597 ~~~~~~~~~~~l~~~~~~L~~~i~~ 621 (946)
+..+.+.....-.....+|.+....
T Consensus 542 v~LL~s~~~~~k~~Aa~AL~nL~~~ 566 (810)
T 3now_A 542 LRMALEGTEKGKRHATQALARIGIT 566 (810)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHhcC
Confidence 7776532223334555666665543
No 49
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.33 E-value=0.0045 Score=63.71 Aligned_cols=222 Identities=11% Similarity=0.094 Sum_probs=131.0
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHH-----HHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALH 416 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~ 416 (946)
+...+..|+.+++.++..-.+.. ..-++.-....++..+.++++-+|..|+|+++.++.. +++... ..++
T Consensus 15 ~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGPASAI--KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG---PDEAIKAIVDAGGVE 89 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHHH--HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---ChHHHHHHHHCCCHH
Confidence 56778889999988876532100 0001111223444556778899999999999999752 222222 3688
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHH
Q 002257 417 SVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGL 495 (946)
Q Consensus 417 ~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l 495 (946)
.++..|.+++..|+..|+.+|.++..... ....+.. ...++.|+.++...+.+....++..+..-.... ......+
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~ 166 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAI 166 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 99999998889999999999999995421 1111111 246777777777655444444544443322211 0000111
Q ss_pred H-HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHHHHHH
Q 002257 496 C-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVLE 573 (946)
Q Consensus 496 ~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~~~l~ 573 (946)
. ...+..+..+.. ++ + .......+.++..+.. ..+.....+ ...++|.+...++.+..+..+.++.
T Consensus 167 ~~~~~i~~L~~ll~----~~----~-~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 234 (252)
T 4hxt_A 167 VDAGGVEVLVKLLT----ST----D-SEVQKEAARALANIAS---GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQR 234 (252)
T ss_dssp HHTTHHHHHHHHTT----CS----C-HHHHHHHHHHHHHHTT---SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHCcCHHHHHHHHC----CC----C-HHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHH
Confidence 1 112233334443 11 1 2233344555555543 244333333 4568899999998877788999999
Q ss_pred HHHHHHhcCC
Q 002257 574 IVSYMTFFSP 583 (946)
Q Consensus 574 ll~~l~~~~~ 583 (946)
.+..+....+
T Consensus 235 ~L~~l~~~~~ 244 (252)
T 4hxt_A 235 ALENIKSGGW 244 (252)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHcCCC
Confidence 9999987654
No 50
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.10 E-value=0.0071 Score=69.92 Aligned_cols=333 Identities=12% Similarity=0.109 Sum_probs=155.6
Q ss_pred CCCCCccchhHHHHHHHHhhhccccCCh-hHHH--HHHHHHHhcCCCC-CCchHHHHHHHHHHHHHhcccccccccchH-
Q 002257 381 EFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFR--KALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILP- 455 (946)
Q Consensus 381 ~l~~~~~~lr~ra~~~l~~~~~~~f~~~-~~~~--~~~~~l~~~L~d~-~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~- 455 (946)
.+++..+-.+..|+..+.+.....-.+| +... -+++.++++|... +..|+..||.||.++..... +.-+..+.
T Consensus 65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~--e~~~~vv~~ 142 (510)
T 3ul1_B 65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS--EQTKAVVDG 142 (510)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH--HHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHC
Confidence 3567788888888888877643222233 2222 2689999999755 45699999999999986531 21111111
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHH-HHH-HHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHH
Q 002257 456 QLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALG-LCQ-NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 533 (946)
Q Consensus 456 ~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~-l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ 533 (946)
..+..|+.++..-+.+....++..+-.-..+. |.... +.. .....+..++... +. ..........+..+++.
T Consensus 143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~--~~~r~~v~~~G~i~~Ll~lL~~~--~~--~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 143 GAIPAFISLLASPHAHISEQAVWALGNIAGDG--SAFRDLVIKHGAIDPLLALLAVP--DL--STLACGYLRNLTWTLSN 216 (510)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHHTCSS--CG--GGSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHcCChHHHHHHHHhc--cc--hhhhHHHHHHHHHHHHH
Confidence 25666777776544443334444332222221 11111 111 0122222343311 10 00000011122233333
Q ss_pred HHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhhh
Q 002257 534 ILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNI 611 (946)
Q Consensus 534 ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~~~~~l~~~ 611 (946)
+.+.-...+. . .....++|.+...+..+..+....+...+..+..........+. .+.|.+...+...........
T Consensus 217 l~~~~~~~~~-~-~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 217 LCRNKNPAPP-L-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp HHCCCSSCCC-H-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HhhcccchhH-H-HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHH
Confidence 3332111111 1 22346789999999888778888888888887643211111111 345667766654334455556
Q ss_pred HHHHHHHHhcCcccccccCCCchH-HHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhch-HHHHHHHHHHH
Q 002257 612 LVPLDNYISRGTAHFLTCKEPDYQ-QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWV-EPYLRITVERL 689 (946)
Q Consensus 612 ~~~L~~~i~~~~~~~l~~~~~~~~-~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l-~~il~~~~~~L 689 (946)
+.+|.+........-. ..+ ..++..+.+++.++ +...+..|+..+..+....+......+ ..++..++..+
T Consensus 295 l~aL~nl~~~~~~~~~-----~i~~~g~l~~L~~LL~~~--~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL 367 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQ-----KVIDAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL 367 (510)
T ss_dssp HHHHHHHTTSCHHHHH-----HHHHTTGGGGCC-CTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHH-----HHhhccchHHHHHHhcCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHH
Confidence 6677665443321100 000 00112223344332 222234455555554432222111111 12444444444
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhCHHHHHHHHHhcCchHHHHH
Q 002257 690 RRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFN 731 (946)
Q Consensus 690 ~~~~~~~~~~~~l~v~~~~~~~~~~~~l~~L~~~~~~~~~~~ 731 (946)
.+ .+..++......+..+.......-...|-+.|+...+..
T Consensus 368 ~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~ 408 (510)
T 3ul1_B 368 SK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408 (510)
T ss_dssp HS-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence 43 234455555556666555433333334444466655544
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.02 E-value=0.0043 Score=64.09 Aligned_cols=218 Identities=12% Similarity=0.145 Sum_probs=121.0
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHH-----HHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALH 416 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~ 416 (946)
+...+..|..++..+...-.+. ...-++.-....++..++++++-+|..|+|+++.++.. +++... ..++
T Consensus 25 ~~~~~~~a~~~L~~~l~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSDGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQIQAVIDAGALP 99 (252)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH--HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCch--HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHH
Confidence 5567777777775544331110 00001111223444556777899999999999999752 222222 2788
Q ss_pred HHHhcCCCCCCchHHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHH
Q 002257 417 SVVSGLRDPELPVRVDSVFALRSFVEACRDL-NEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGL 495 (946)
Q Consensus 417 ~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~-~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l 495 (946)
.+++.|.+++..|+..|+.+|.++....... ..+. -...++.|+.++...+.+....++..+..-.... ......+
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~ 176 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI--DAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAV 176 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHH--HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHH
Confidence 9999999888899999999999998764321 1111 1246777888886654444444444443332211 0011111
Q ss_pred H-HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHHHHHH
Q 002257 496 C-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVLE 573 (946)
Q Consensus 496 ~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~~~l~ 573 (946)
. ...+..+.++.+ ++ + .......+.++..+.. ..+.....+ +...+|.+...+.....+....+..
T Consensus 177 ~~~~~i~~L~~ll~----~~----~-~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~ 244 (252)
T 4db8_A 177 IDAGALPALVQLLS----SP----N-EQILQEALWALSNIAS---GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244 (252)
T ss_dssp HHTTCHHHHHHGGG----CS----S-HHHHHHHHHHHHHHTT---SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHH
T ss_pred HHCCCHHHHHHHHC----CC----C-HHHHHHHHHHHHHHhc---CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHH
Confidence 1 112233334443 21 1 1223344555555542 234333333 3457888888888776677777777
Q ss_pred HHHHHH
Q 002257 574 IVSYMT 579 (946)
Q Consensus 574 ll~~l~ 579 (946)
.+..+.
T Consensus 245 ~L~~l~ 250 (252)
T 4db8_A 245 ALEKLQ 250 (252)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 776653
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.98 E-value=0.0078 Score=69.96 Aligned_cols=331 Identities=12% Similarity=0.096 Sum_probs=156.6
Q ss_pred CCCCccchhHHHHHHHHhhhccccCCh-hH--HHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcc-cccccccchHH
Q 002257 382 FSSPVGHLRAKAAWVAGQYAHINFSDQ-NN--FRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACR-DLNEIRPILPQ 456 (946)
Q Consensus 382 l~~~~~~lr~ra~~~l~~~~~~~f~~~-~~--~~~~~~~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~ 456 (946)
+.++.+-.+-.|+..+.++-...-.++ +. -.-+++.++++|.. .+..++..||.||.++..... ....+. -..
T Consensus 85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv--~~G 162 (529)
T 3tpo_A 85 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV--DGG 162 (529)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH--HTT
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH--HCC
Confidence 456677777777777766532221122 11 22478889999974 456699999999999987642 111111 113
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHH-HHHH-HHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHH
Q 002257 457 LLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALG-LCQN-LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 534 (946)
Q Consensus 457 il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~-l~~~-L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~l 534 (946)
.+..|+.++...+.+....++..+-.-..+. |.... +... .+..+..++.. ++...........+..+++.+
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~--~~~r~~i~~~g~i~~Ll~lL~~----~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAGAG--SAFRDLVIKHGAIDPLLALLAV----PDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTCHHHHHHTTCS----SCGGGSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhccC--HHHHHHHHHcCCcHHHHHHHhc----cchhHhHHHHHHHHHHHHHHH
Confidence 5666777776654444444444332222221 11111 1110 12222233331 100000000111222333333
Q ss_pred HHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhhhH
Q 002257 535 LESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNIL 612 (946)
Q Consensus 535 l~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~~~~~l~~~~ 612 (946)
.+.-...+. ......++|.+...+..+..+...+++..+..+..........+. .+.|.+...+.+.........+
T Consensus 237 ~~~~~~~~~--~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 237 CRNKNPAPP--LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HCCCTTCCC--HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred Hhcccchhh--HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 322111111 122345789999999888778888888888877753311111111 3556777766543344555666
Q ss_pred HHHHHHHhcCcccccccCCCchH-HHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhchH-HHHHHHHHHHH
Q 002257 613 VPLDNYISRGTAHFLTCKEPDYQ-QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVE-PYLRITVERLR 690 (946)
Q Consensus 613 ~~L~~~i~~~~~~~l~~~~~~~~-~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~-~il~~~~~~L~ 690 (946)
.+|.+........ .. ..+ ...+..+.+++.++ +...+..|+..+..+....+......+. .++..++..+.
T Consensus 315 ~aL~nl~~~~~~~-~~----~i~~~g~l~~L~~LL~~~--~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~ 387 (529)
T 3tpo_A 315 RAIGNIVTGTDEQ-TQ----KVIDAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 387 (529)
T ss_dssp HHHHHHTTSCHHH-HH----HHHHTTGGGGHHHHTTCS--SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHccchHH-HH----HHhhcccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc
Confidence 7777765433221 00 000 11233445566543 2333445666666655433222111111 24444444444
Q ss_pred hhhhhHHHHHHHHHHHHHHhh-CHHHHHHHHHhcCchHHHHH
Q 002257 691 RAEKSYLKCLLVQVIADALYY-NSSLTLSILHKLGVATEVFN 731 (946)
Q Consensus 691 ~~~~~~~~~~~l~v~~~~~~~-~~~~~l~~L~~~~~~~~~~~ 731 (946)
+ ....++......+.++... ++.... .|-+.|+...+..
T Consensus 388 ~-~~~~v~~~A~~aL~nl~~~~~~~~~~-~l~~~g~i~~L~~ 427 (529)
T 3tpo_A 388 K-ADFKTQKAAAWAITNYTSGGTVEQIV-YLVHCGIIEPLMN 427 (529)
T ss_dssp S-SCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHTTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHcCCCHHHHH-HHHHCcCHHHHHH
Confidence 4 2334455555555555544 444433 3434455554443
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.97 E-value=0.008 Score=61.79 Aligned_cols=184 Identities=11% Similarity=0.111 Sum_probs=108.0
Q ss_pred ccCCCCCccchhHHHHHHHHhhhccccCChhHHH-----HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc-cccccccc
Q 002257 379 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALHSVVSGLRDPELPVRVDSVFALRSFVEAC-RDLNEIRP 452 (946)
Q Consensus 379 ~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~-~~~~~l~p 452 (946)
+..++++++-+|..|+|.++.++... ++... .+++.+++.|.+++..|+..|+.+|.++.... +....+.
T Consensus 8 ~~~L~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 83 (252)
T 4hxt_A 8 VKLLTSTDSETQKEAARDLAEIASGP---ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV- 83 (252)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCC---cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH-
Confidence 34466777999999999999997522 22222 37888999999888889999999999998762 1122221
Q ss_pred chHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHH-HHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHH
Q 002257 453 ILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAI 531 (946)
Q Consensus 453 ~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti 531 (946)
-...++.|+.+++..+.+....++..+..-.... ......+.. ..+..+.++.+ ++ + .......+.++
T Consensus 84 -~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~----~~----~-~~~~~~a~~~L 152 (252)
T 4hxt_A 84 -DAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLT----ST----D-SEVQKEAARAL 152 (252)
T ss_dssp -HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTT----CS----C-HHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHc----CC----C-HHHHHHHHHHH
Confidence 1135677777777544444444444443322111 111111111 12233334443 21 1 22333455555
Q ss_pred HHHHHhhcCChhHH-HHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 002257 532 STILESVSRLPHLF-VQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 580 (946)
Q Consensus 532 ~~ll~~~~~~~~~~-~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~ 580 (946)
..+... .+... .-+....+|.+...+..+.......++..+..+..
T Consensus 153 ~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 153 ANIASG---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHTTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHcC---CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 555432 33222 22345688999999988777888889988888875
No 54
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.77 E-value=0.043 Score=66.84 Aligned_cols=289 Identities=14% Similarity=0.060 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHh
Q 002257 298 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 377 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~ 377 (946)
..|.++..++..... ..+....++.+...+.. .+...|+.|+.+++.++..-....... ..... ...
T Consensus 130 ~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~--------~d~~vr~~A~~~L~~L~~~~~~~~~i~-~~~~~-i~~ 196 (780)
T 2z6g_A 130 MLKHAVVNLINYQDD---AELATRAIPELTKLLND--------EDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQM-VSA 196 (780)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHHTSHHHHHHHT-TCHHH-HHH
T ss_pred HHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCC--------CCHHHHHHHHHHHHHHhCCChhHHHHH-hccCh-HHH
Confidence 356677777664422 12223344444555543 267889999999999986422110000 00011 112
Q ss_pred cccCCC-CCccchhHHHHHHHHhhhccccCChhH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 378 VFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 378 v~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~--~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
++..|. +.++-+|..|++++..++... .+... -..+++.++..|++++..|+..|+.||.+++.... +.-....
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~--~~~~~v~ 273 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE--GAKMAVR 273 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST--THHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh--hhHHHHH
Confidence 222333 347889999999999876521 00011 12478889999998888899999999999998742 1111111
Q ss_pred -HHHHHHHHHHHhhhhhhhH---HHHHHHHHHhhCCccccc--HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHH
Q 002257 455 -PQLLDEFFKLMNEVENEDL---VFTLETIVDKFGEEMAPY--ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCL 528 (946)
Q Consensus 455 -~~il~~Ll~ll~~~~~e~l---~~~L~~iv~~~~~~i~p~--~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 528 (946)
..++..|+.++...+.+.. ..+|..+... .++.... ....+..|+ ++++.. ++ +. ....+.
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~e~~~~i~~~~~i~~Lv----~lL~~~--~~----~~--~~~~a~ 340 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKLIILASGGPQALV----NIMRTY--TY----EK--LLWTTS 340 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHTTTHHHHHH----HHHTTC--CC----HH--HHHHHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCCHHHHH----HHHhcC--CH----HH--HHHHHH
Confidence 2467777888865332222 2233322210 0110000 001122233 344321 11 11 111122
Q ss_pred HHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhh
Q 002257 529 RAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDF 607 (946)
Q Consensus 529 ~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~ 607 (946)
.++..+ ...+.....+ ..-++|.+...+..........+...+..+....+.. .....++|.+...+.......
T Consensus 341 ~aL~~L----s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v 415 (780)
T 2z6g_A 341 RVLKVL----SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINV 415 (780)
T ss_dssp HHHHHH----HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHh----hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-hhhhhHHHHHHHHHcCCCHHH
Confidence 222222 2222223333 3457788888887776678888888888887654321 123456777777766433444
Q ss_pred HhhhHHHHHHHHh
Q 002257 608 FPNILVPLDNYIS 620 (946)
Q Consensus 608 l~~~~~~L~~~i~ 620 (946)
....+.+|.+...
T Consensus 416 r~~A~~aL~~L~~ 428 (780)
T 2z6g_A 416 VTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHh
Confidence 5555666666543
No 55
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.67 E-value=2.6 Score=53.71 Aligned_cols=272 Identities=10% Similarity=0.035 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHHhhh---h-------------
Q 002257 408 QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDEFFKLMNEV---E------------- 469 (946)
Q Consensus 408 ~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~--~~~~l~p~l~~il~~Ll~ll~~~---~------------- 469 (946)
...+..+++.++.++++++..|...++.-...+++... ..+.+.|+++.+++.+...+.+. +
T Consensus 346 ~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D 425 (1204)
T 3a6p_A 346 PSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFD 425 (1204)
T ss_dssp CTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcc
Confidence 45788999999999998888888888888888877642 23457788888888874433221 0
Q ss_pred h----h--h--------HHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhc-c---CCCC-------C-CChhhHH
Q 002257 470 N----E--D--------LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTA-E---ADED-------A-DDPGALA 523 (946)
Q Consensus 470 ~----e--~--------l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~-~---~d~~-------~-~~~~~~~ 523 (946)
. | . +..++..++....+...++....+ ...+....... . .+.. . .......
T Consensus 426 ~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 502 (1204)
T 3a6p_A 426 FDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWL---KYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQ 502 (1204)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH---HHHHTCC-----------------CCSCSSSHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHHHhhhhcccccccccccccccccccCcCCHHHHH
Confidence 0 0 0 112333333333222222222211 11111100000 0 0000 0 0011111
Q ss_pred HHHHHHHHHHHHHhh---cCChhHHHHHHhhHHHHHHHhcc--cchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 002257 524 AVGCLRAISTILESV---SRLPHLFVQIEPTLLPIMRRMLT--TDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMME 598 (946)
Q Consensus 524 ~~~~l~ti~~ll~~~---~~~~~~~~~l~~~l~p~i~~~l~--~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~ 598 (946)
.-+.+..+..+++.+ ...++.-..+.+.+++ .++. ....-...-.+.+|+.+......-++.+..++..++.
T Consensus 503 ~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~---~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~ 579 (1204)
T 3a6p_A 503 WEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ---MVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFS 579 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH---HHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHH---HHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 112222233333332 1111111112222333 3333 2233455667888887776643333445567777766
Q ss_pred HHhhh------------HhhhHhhhHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCC-CCCcccCchhhHHHH
Q 002257 599 ALADW------------AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKN-LEDGDIEPAPKLIEV 665 (946)
Q Consensus 599 ~~~~~------------~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~-~~~~~~~~a~~ll~~ 665 (946)
.+... ..+.-..+..++..+....++.++ +|++.+...+..++.+.. ....+......-+..
T Consensus 580 ~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~-----p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ 654 (1204)
T 3a6p_A 580 SVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL-----PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVL 654 (1204)
T ss_dssp HHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG-----GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHH
T ss_pred hhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHH
Confidence 65421 123334455666666667777777 799999999988886554 444333333333333
Q ss_pred HHHHccc--CchhchHHHHHHHHHHHH
Q 002257 666 VFQNCKG--QVDHWVEPYLRITVERLR 690 (946)
Q Consensus 666 il~~~~~--~~~~~l~~il~~~~~~L~ 690 (946)
+....++ ....|+..++.-+++++.
T Consensus 655 ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 655 ISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3222233 234456666666666554
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.67 E-value=0.022 Score=60.29 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHHhcCc--------ccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHH
Q 002257 298 SPRTASMDFVSELVRKRGK--------ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSE 369 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~~--------~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~ 369 (946)
.+|..|...|..++...+. ..+++++ +.|.+. + +-..|..|+++++.++.+-.. .
T Consensus 97 ~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll----~LL~~~---~----~~~v~~~A~~ALsnl~~~~~~------~ 159 (296)
T 1xqr_A 97 GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL----RLLDRD---A----CDTVRVKALFAISCLVREQEA------G 159 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH----HHHHHC---S----CHHHHHHHHHHHHHHHTTCHH------H
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH----HHHccC---C----CHHHHHHHHHHHHHHHcCCcH------H
Confidence 3577778888887764321 2334444 445431 1 346788999999998865221 1
Q ss_pred HHHHH----HHhcccCCCCCccchhHHHHHHHHhhhccccCCh--hHHH--HHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 002257 370 LERML----VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFR--KALHSVVSGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 370 l~~~l----~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~--~~~~--~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
...|. ...++..++++.+-+|.+|||+++.++... +. +.+. -+++.++.+|.+++..|+..|+.||.+++
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 11111 123333456788999999999999987531 11 2222 37788899999889999999999999999
Q ss_pred Hhc
Q 002257 442 EAC 444 (946)
Q Consensus 442 ~~~ 444 (946)
...
T Consensus 238 ~~~ 240 (296)
T 1xqr_A 238 TDF 240 (296)
T ss_dssp TTC
T ss_pred hCC
Confidence 873
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.59 E-value=0.0084 Score=59.92 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=98.3
Q ss_pred cCHHHHHHHHHHHHHHhcCcc---cH-HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKE---NL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 372 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~---~l-~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~ 372 (946)
...|..|...|..++...+.. +. ...++.+.+.+.+ .+...++.|+.+++.++.+-.+.... -++.
T Consensus 26 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~--i~~~ 95 (210)
T 4db6_A 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQA--VIDA 95 (210)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSCHHHHHH--HHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCcHHHHH--HHHC
Confidence 557888888898888543221 11 0234444556554 26788999999999998542110000 0000
Q ss_pred HHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHH-----HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-c
Q 002257 373 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNF-----RKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-D 446 (946)
Q Consensus 373 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~-----~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-~ 446 (946)
-....++..+.++++-+|..|+|+++.++.. +++.. ..+++.+++.|.+++..|+..|+.||.+++.... .
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 0123344456778899999999999999752 23222 2468899999998888999999999999998631 1
Q ss_pred ccccccchHHHHHHHHHHHhhh
Q 002257 447 LNEIRPILPQLLDEFFKLMNEV 468 (946)
Q Consensus 447 ~~~l~p~l~~il~~Ll~ll~~~ 468 (946)
...+. -...++.|..++...
T Consensus 173 ~~~~~--~~g~i~~L~~ll~~~ 192 (210)
T 4db6_A 173 KQAVK--EAGALEKLEQLQSHE 192 (210)
T ss_dssp HHHHH--HTTHHHHHHHGGGCS
T ss_pred HHHHH--HCCCHHHHHHHHhCC
Confidence 11111 113566666766643
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.50 E-value=0.014 Score=58.15 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=107.8
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHH-----HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-ccccc
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEI 450 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-~~~~l 450 (946)
.+.+.++++++-+|..|+|.++.++.. +++... .+++.+++.|.+++..|+..|+.+|.++..... ....+
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASG---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 444557788999999999999999742 222222 467899999998888999999999999985431 11111
Q ss_pred ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHH-HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHH
Q 002257 451 RPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 529 (946)
Q Consensus 451 ~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 529 (946)
.. ...+..|+.+++..+.+....++..+..-.... ......+. ...+..+.++.+. + + .......+.
T Consensus 93 ~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~----~----~-~~v~~~a~~ 160 (210)
T 4db6_A 93 ID--AGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS----P----N-EQILQEALW 160 (210)
T ss_dssp HH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTC----S----C-HHHHHHHHH
T ss_pred HH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCcHHHHHHHHcC----C----C-HHHHHHHHH
Confidence 10 135666777776654444344444333222111 11111111 1123333344431 1 1 123334455
Q ss_pred HHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002257 530 AISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 579 (946)
Q Consensus 530 ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~ 579 (946)
++..+... .+.....+ +.-.+|.+...+..+..+..+.+...+..+.
T Consensus 161 aL~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 161 ALSNIASG---GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTS---CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcC---CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 55555542 23323333 4467888888888777788888888887764
No 59
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.49 E-value=0.12 Score=61.59 Aligned_cols=255 Identities=15% Similarity=0.064 Sum_probs=138.9
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCC-CccchhHHHHHHHHhhhccccCChhHHH-----HHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQYAHINFSDQNNFR-----KAL 415 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~ 415 (946)
+...|+.|..+++.++..-....... .....+ ..++..+.+ +.+-+|..|+..+..++.. .+... ..+
T Consensus 27 ~~~vr~~A~~~L~~La~~~~~~~~i~-~~~~~i-~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~----~~~~~~i~~~g~i 100 (644)
T 2z6h_A 27 DQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMV-SAIVRTMQNTNDVETARCTAGTLHNLSHH----REGLLAIFKSGGI 100 (644)
T ss_dssp CHHHHHHHHHHHHHHHTSTTHHHHHT-TCHHHH-HHHHHHHHSCCCHHHHHHHHHHHHHHTTS----HHHHHHHHTTTHH
T ss_pred CHHHHHHHHHHHHHHHCCChhHHHHH-hccChH-HHHHHHHhcCCCHHHHHHHHHHHHHHhcC----hhhHHHHHHcCCH
Confidence 67899999999999987532110000 000111 122223333 4788999999999887652 22221 367
Q ss_pred HHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch-HHHHHHHHHHHhhhhhhhHH---HHHHHHHHhhCCccccc
Q 002257 416 HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEEMAPY 491 (946)
Q Consensus 416 ~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l-~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~~~~~i~p~ 491 (946)
+.+++.|.+++..|+..|+.+|.+++...+ +...... ...+..|+.++.....+... .+|..+.... ++ .
T Consensus 101 ~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~--~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~-~~---~ 174 (644)
T 2z6h_A 101 PALVKMLGSPVDSVLFYAITTLHNLLLHQE--GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN-QE---S 174 (644)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHST--THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HH---H
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhCcc--hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC-cH---H
Confidence 889999998888899999999999998742 1111111 34677777777654322222 2333332110 10 0
Q ss_pred HHHHHH-HHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHH
Q 002257 492 ALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFE 569 (946)
Q Consensus 492 ~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~ 569 (946)
...+.. ..+..+.++++.. +. +. .......++..+...+.....+ ..-.+|.+...+......+..
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~--~~----~~------~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~ 242 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTY--TY----EK------LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTC--CC----HH------HHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcC--Ch----HH------HHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 001110 1122333444421 11 11 1122223333333334333333 344788888888777778888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhc
Q 002257 570 EVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR 621 (946)
Q Consensus 570 ~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~ 621 (946)
.++..+..+....+.. .....++|.++..+.+.+.+.......+|.+....
T Consensus 243 ~a~~~L~nL~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 243 NCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHHHGGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8898888887654321 12346778888777643344555556666665443
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.41 E-value=0.022 Score=60.24 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=63.5
Q ss_pred hccc-CCCCCccchhHHHHHHHHhhhccccCChhH---H--HHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccc
Q 002257 377 HVFP-EFSSPVGHLRAKAAWVAGQYAHINFSDQNN---F--RKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNE 449 (946)
Q Consensus 377 ~v~p-~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~---~--~~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~~~~~~ 449 (946)
.+++ .|.++++-+|..|+|++|..+.- ++.. . ...++.++++|. +++..|+..|+.||.+++.... +.
T Consensus 85 ~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~---n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~--~~ 159 (296)
T 1xqr_A 85 LLVGRYLEAGAAGLRWRAAQLIGTCSQN---VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE--AG 159 (296)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH--HH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc--HH
Confidence 3445 67889999999999999999752 2221 1 146788888887 4577899999999999998642 21
Q ss_pred cccch-HHHHHHHHHHHhhhhhhhHHHH
Q 002257 450 IRPIL-PQLLDEFFKLMNEVENEDLVFT 476 (946)
Q Consensus 450 l~p~l-~~il~~Ll~ll~~~~~e~l~~~ 476 (946)
...++ ...+..|..+++..+......+
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 21221 1456667777765444443333
No 61
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.40 E-value=0.15 Score=60.54 Aligned_cols=306 Identities=8% Similarity=0.025 Sum_probs=152.0
Q ss_pred CCCCCccchhHHHHHHHHhhhccccCCh-h-H--HHHHHHHHHhcCCC-CCCchHHHHHHHHHHHHHhcccccccccchH
Q 002257 381 EFSSPVGHLRAKAAWVAGQYAHINFSDQ-N-N--FRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILP 455 (946)
Q Consensus 381 ~l~~~~~~lr~ra~~~l~~~~~~~f~~~-~-~--~~~~~~~l~~~L~d-~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~ 455 (946)
.++++++.+|.+|+.++++++... .. . . ...+++.+++.|.+ ++..++..|+.+|..+....+....+.. .
T Consensus 22 lL~~~~~~vr~~A~~~L~~La~~~--~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~--~ 97 (644)
T 2z6h_A 22 LLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK--S 97 (644)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTST--THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT--T
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCC--hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH--c
Confidence 345788999999999999998622 21 1 1 13578888888875 4778999999999988765432222222 2
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHH-HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHH
Q 002257 456 QLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC-QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 534 (946)
Q Consensus 456 ~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~-~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~l 534 (946)
..+..|+.+++..+.+....++..+..-.... .+....+. ...+..+.++++. + + .........++..+
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~----~----~-~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNK----T----N-VKFLAITTDCLQIL 167 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGC----C----C-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCc----C----C-HHHHHHHHHHHHHH
Confidence 46777888887654444444444443222110 01111111 1122333344442 1 1 11122223333333
Q ss_pred HHhhcCChhHHHH-HHhhHHHHHHHhcccch-hhHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhhhHhhhHhh
Q 002257 535 LESVSRLPHLFVQ-IEPTLLPIMRRMLTTDG-QEVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPN 610 (946)
Q Consensus 535 l~~~~~~~~~~~~-l~~~l~p~i~~~l~~~~-~~~~~~~l~ll~~l~~~~~~i~p~l~--~l~~~l~~~~~~~~~~~l~~ 610 (946)
... +++.... ...-.+|.+..++.... ......+..++..+... +..-..+. ...|.+...+..........
T Consensus 168 a~~---~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 243 (644)
T 2z6h_A 168 AYG---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243 (644)
T ss_dssp HTT---CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHHHHH
T ss_pred Hhc---CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 321 2222222 23346777777776543 34455666666666532 22222222 24566665554333455566
Q ss_pred hHHHHHHHHhcCcccccccCCCchHHHHHHHHHHHHcCCCCCCcccCchhhHHHHHHHHcccCchhch-HHHHHHHHHHH
Q 002257 611 ILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWV-EPYLRITVERL 689 (946)
Q Consensus 611 ~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l-~~il~~~~~~L 689 (946)
++.+|.+.....+.. .....++..+.+++.+. +......++..+..+..+-+......+ ...+..++..+
T Consensus 244 a~~~L~nL~~~~~~~-------~~~~~~i~~Lv~lL~~~--d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL 314 (644)
T 2z6h_A 244 CLWTLRNLSDAATKQ-------EGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314 (644)
T ss_dssp HHHHHHHHGGGCTTC-------CSCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhhcchhh-------hhhhhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH
Confidence 677777765443321 12345566666677543 233344566666555432211111111 12344445555
Q ss_pred Hhhh-hhHHHHHHHHHHHHHHhhCH
Q 002257 690 RRAE-KSYLKCLLVQVIADALYYNS 713 (946)
Q Consensus 690 ~~~~-~~~~~~~~l~v~~~~~~~~~ 713 (946)
.... ...++...+..+.++...++
T Consensus 315 ~~~~~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 315 LRAGDREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HccCCcHHHHHHHHHHHHHHhcCCc
Confidence 4422 24555556666666554444
No 62
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.35 E-value=0.0069 Score=62.50 Aligned_cols=172 Identities=14% Similarity=0.161 Sum_probs=100.2
Q ss_pred cCHHHHHHHHHHHHHHhcCc---ccH-HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGK---ENL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 372 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~---~~l-~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~ 372 (946)
...|..|...|..+...... .+. ...++.+.+.+++. +...+..|+.+++.++.+-.+.... -++.
T Consensus 26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~--i~~~ 95 (252)
T 4db8_A 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP--------NEQILQEALWALSNIASGGNEQIQA--VIDA 95 (252)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS--------CHHHHHHHHHHHHHHTTSCHHHHHH--HHHT
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC--------CHHHHHHHHHHHHHHhcCCHHHHHH--HHHc
Confidence 56777777777554443211 111 12334445666542 5788999999999998742221000 0111
Q ss_pred HHHHhcccCCCCCccchhHHHHHHHHhhhccccCC-hhH-HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccc
Q 002257 373 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD-QNN-FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI 450 (946)
Q Consensus 373 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~-~~~-~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l 450 (946)
-....++..++++++-+|..|+|+++.++...-.. ... -..+++.+++.|.+++..|+..|+.+|.++..... +..
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~ 173 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQI 173 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh--HHH
Confidence 12234445567788999999999999997521000 011 12378899999998889999999999999987531 111
Q ss_pred ccc-hHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 002257 451 RPI-LPQLLDEFFKLMNEVENEDLVFTLETI 480 (946)
Q Consensus 451 ~p~-l~~il~~Ll~ll~~~~~e~l~~~L~~i 480 (946)
... -..++..|+.++...+.+....++..+
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 204 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWAL 204 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 110 123566667777654333333444333
No 63
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.02 E-value=0.27 Score=56.57 Aligned_cols=258 Identities=15% Similarity=0.078 Sum_probs=138.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC-CCccchhHHHHHHHHhhhccccCChhHH--HHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNF--RKALHSV 418 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~~--~~~~~~l 418 (946)
+...++.|..+++.++..-....... .-...+ ..++..+. ++++.+|..|++.++.++... .+.... ...++.+
T Consensus 30 ~~~v~~~A~~~L~~l~~~~~~~~~~~-~~~~~i-~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g~i~~L 106 (529)
T 1jdh_A 30 DQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMV-SAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPAL 106 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHH-TCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccHHHHH-hCcchH-HHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-hhHHHHHHcCCHHHH
Confidence 67889999999999886422110000 000111 11222233 357889999999999986521 001111 1367889
Q ss_pred HhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhhhhhhhHH---HHHHHHHHhhCCcccccHHH
Q 002257 419 VSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLV---FTLETIVDKFGEEMAPYALG 494 (946)
Q Consensus 419 ~~~L~d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~~~~e~l~---~~L~~iv~~~~~~i~p~~~~ 494 (946)
++.|.+++..|+..|+.+|.+++...+ ....+. -...++.|+.++.....+... .+|..+... .++. ...
T Consensus 107 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~-~~~~---~~~ 180 (529)
T 1jdh_A 107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQES---KLI 180 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH--HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHH---HHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-CHHH---HHH
Confidence 999998888899999999999998742 111121 134667777777653322222 233322210 0110 001
Q ss_pred HHH-HHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHHHHH
Q 002257 495 LCQ-NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVL 572 (946)
Q Consensus 495 l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~~~l 572 (946)
+.. ..+..+.++++.. ++ .. .......++..+...+.....+ ....+|.+...+.....++...+.
T Consensus 181 i~~~~~i~~L~~ll~~~--~~----~~------~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTY--TY----EK------LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HHHTTHHHHHHHHHHHC--CC----HH------HHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhC--Ch----HH------HHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 110 0112222333321 11 11 1122223334443344333333 345788888888877777888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhc
Q 002257 573 EIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR 621 (946)
Q Consensus 573 ~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~ 621 (946)
..+..+....+... ....++|.+.+.+.+.+.+.......+|.+....
T Consensus 249 ~~L~~l~~~~~~~~-~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 249 WTLRNLSDAATKQE-GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHHHHTTCTTCS-CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCChhhH-HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 88888876543211 2346778888777644445555566666665443
No 64
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.84 E-value=2.9 Score=46.01 Aligned_cols=296 Identities=13% Similarity=0.153 Sum_probs=161.3
Q ss_pred CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 002257 384 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 463 (946)
Q Consensus 384 ~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ 463 (946)
...+-.|.=|+.+|++|-. .| |+.....+.+.+.+..|.+.-||..|...|-.+|.+ .+++.+...|.+
T Consensus 39 kg~~k~K~LaaQ~I~kffk-~F--P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFK-HF--PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--------ENLPRVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGG-GC--GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--------TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-hC--hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--------hhhhhHHHHHHH
Confidence 3567889999999999965 34 468899999999999999999999999999988865 357888888888
Q ss_pred HHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChh
Q 002257 464 LMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPH 543 (946)
Q Consensus 464 ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~ 543 (946)
+++.-+...+..+=.++++.++-+-. ..|...|.++.+. + ...+..++.-|..-+..+....
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk-------~tl~~lf~~i~~~---~-------e~~Rer~lkFi~~kl~~l~~~~- 169 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK-------GTLGGLFSQILQG---E-------DIVRERAIKFLSTKLKTLPDEV- 169 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHS---C-------HHHHHHHHHHHHHHGGGSCTTT-
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH-------HHHHHHHHHHccc---c-------hHHHHHHHHHHHHHHhhcchhh-
Confidence 88865544444443444443332211 1222333343331 1 2345567777766666654321
Q ss_pred HHHHHHhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh------hHhhhHhhhHHHHH
Q 002257 544 LFVQIEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALAD------WAIDFFPNILVPLD 616 (946)
Q Consensus 544 ~~~~l~~~l~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~------~~~~~l~~~~~~L~ 616 (946)
....++..+.-.+..+|+.- ..+| .-.++++..+-.. +.+ +...++.+.+..-..- .+.+.+..++.|+.
T Consensus 170 l~~E~E~~i~~~ikK~L~DVT~~EF-~L~m~lL~~lkl~-~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~ 246 (507)
T 3u0r_A 170 LTKEVEELILTESKKVLEDVTGEEF-VLFMKILSGLKSL-QTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTR 246 (507)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCHHHH-HHHHHHHHTSGGG-SSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHhcccc-cCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHH
Confidence 23567788888888888542 2232 2233444332111 233 3445555555544210 12456666666665
Q ss_pred HHHhcCcccccccCCCchHHHHHHHHHHHHcC-CCCCC-----cccCchhhHHHHHHHHccc--CchhchHHHHHHHHHH
Q 002257 617 NYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD-KNLED-----GDIEPAPKLIEVVFQNCKG--QVDHWVEPYLRITVER 688 (946)
Q Consensus 617 ~~i~~~~~~~l~~~~~~~~~~i~~i~~~ll~~-~~~~~-----~~~~~a~~ll~~il~~~~~--~~~~~l~~il~~~~~~ 688 (946)
.-+-+-.... +...+++. +|.+++-. ..+.+ ..+....+++..+..+++. ...+.++.++..++..
T Consensus 247 ~ALP~FS~~v---~StkFv~y---~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~y 320 (507)
T 3u0r_A 247 QAVPLFSKNV---HSTRFVTY---FCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEY 320 (507)
T ss_dssp HHGGGCBTTB---CCHHHHHH---HHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCC---ChHHHHHH---HHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHH
Confidence 5332211111 11123333 33444410 01111 1233334444444444442 3445666666666554
Q ss_pred HHh-h-----------hhh----HHHHHHHHHHHHHHhhCHHHHH
Q 002257 689 LRR-A-----------EKS----YLKCLLVQVIADALYYNSSLTL 717 (946)
Q Consensus 689 L~~-~-----------~~~----~~~~~~l~v~~~~~~~~~~~~l 717 (946)
+-. + ..+ ...-.++++|..+....|+.+.
T Consensus 321 mP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~ 365 (507)
T 3u0r_A 321 MPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLT 365 (507)
T ss_dssp SCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHH
T ss_pred CCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhc
Confidence 411 1 111 2234466677777777888773
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.77 E-value=0.072 Score=65.02 Aligned_cols=209 Identities=16% Similarity=0.210 Sum_probs=128.4
Q ss_pred HHHHHHHHhhhccc-cCC--hhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh
Q 002257 391 AKAAWVAGQYAHIN-FSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 391 ~ra~~~l~~~~~~~-f~~--~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
..||..++..+... -.+ +.++..+++.++....|...+||..|..|+..++... .++.+.-.+|.++..+-.--+-
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~kw 148 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV-NPVAIKALLPHLTNAIVETNKW 148 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHhccccch
Confidence 88999999887521 111 2566678899999999999999999999999999986 3455544444444443111111
Q ss_pred hhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 002257 468 VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ 547 (946)
Q Consensus 468 ~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~ 547 (946)
..-.....++..+++...+.+.-..+++++.+...+ | | -++-....-..|+..+...+++ .+
T Consensus 149 ~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~-----d-----~k~~v~~~~~~~~~~~~~~~~n-~d---- 210 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM---W-----D-----TKKEVKAAATAAMTKATETVDN-KD---- 210 (986)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHT---T-----C-----SSHHHHHHHHHHHHHHGGGCCC-TT----
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhc---c-----c-----CcHHHHHHHHHHHHHHHhcCCC-cc----
Confidence 233445677888887766666666666666555322 2 1 1222233344556666655543 22
Q ss_pred HHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhHhhhHhhhHHHHHHHHhc
Q 002257 548 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR 621 (946)
Q Consensus 548 l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l~~l~~~l~~~~~~~~~~~l~~~~~~L~~~i~~ 621 (946)
+ +.++|.+..|+.++.. .++++..|++.++...-=+|.+--+-|.|...+.......=.....+++|..+.
T Consensus 211 ~-~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 211 I-ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp T-GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred h-hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 2 3578999999887633 889999999888765444566666677777666421111213344555665443
No 66
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.63 E-value=0.073 Score=53.02 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=100.4
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
++..|..|+.++|.+... . -+ +.+ +..+.++++.+|..|++.+|++.. + ..++.++..
T Consensus 32 ~~~vR~~A~~~L~~~~~~-----~---~~-~~L----~~~l~~~~~~vr~~a~~aL~~~~~-----~----~~~~~L~~~ 89 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-----R---AV-EPL----IKALKDEDAWVRRAAADALGQIGD-----E----RAVEPLIKA 89 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-----G---GH-HHH----HHHTTCSCHHHHHHHHHHHHHHCC-----G----GGHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-----c---HH-HHH----HHHHcCCCHHHHHHHHHHHHhhCC-----H----HHHHHHHHH
Confidence 789999999999987641 1 11 112 234567899999999999998864 2 245667778
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 501 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~ 501 (946)
|.|++..||..|+.+|..+-.. ..+..|..+++..+.+.-..++..+...-..+ .+..|.
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-------~~~~L~- 149 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGDE------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDER-------AVEPLI- 149 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-------GHHHHH-
T ss_pred HcCCCHHHHHHHHHHHHHhCcH------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-------HHHHHH-
Confidence 8899999999999999876321 23444555555444333445555443332221 122222
Q ss_pred HHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 002257 502 AFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 580 (946)
Q Consensus 502 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~ 580 (946)
.+.+ |+ + ...+.....++..+ + . +...|.+...++.+.......+.+.|..+-.
T Consensus 150 ---~~l~----d~----~-~~vr~~a~~aL~~~----~-~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 150 ---KALK----DE----D-GWVRQSAADALGEI----G-G--------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp ---HHTT----CS----S-HHHHHHHHHHHHHH----C-S--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred ---HHHc----CC----C-HHHHHHHHHHHHHh----C-c--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 2232 32 2 23344444444443 2 2 2355666666666666667777777666543
No 67
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.60 E-value=0.14 Score=50.52 Aligned_cols=91 Identities=21% Similarity=0.312 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhh
Q 002257 321 KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 400 (946)
Q Consensus 321 ~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~ 400 (946)
...+.+.+.|.+ .++..|..|+.++|.+... . .++. + +..+.++++.+|..|++.+|++
T Consensus 14 ~~~~~~i~~L~~--------~~~~vr~~A~~~L~~~~~~-----~---~~~~-L----~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 14 EKVEMYIKNLQD--------DSYYVRRAAAYALGKIGDE-----R---AVEP-L----IKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp HHHHHHHHHTTC--------SCHHHHHHHHHHHHHHCCG-----G---GHHH-H----HHHTTCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcC--------CCHHHHHHHHHHHHhcCCh-----h---HHHH-H----HHHHcCCCHHHHHHHHHHHHhh
Confidence 344455566654 2789999999999987642 1 1212 2 2345678999999999999988
Q ss_pred hccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 002257 401 AHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 401 ~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
.. + ..++.++..|.|++..||..|+.+|..+-
T Consensus 73 ~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 73 GD-----E----RAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CC-----G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CC-----H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 54 2 24567777888998999999999998863
No 68
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.47 E-value=0.039 Score=54.59 Aligned_cols=108 Identities=22% Similarity=0.334 Sum_probs=75.0
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
...|..|...|..+. ....++.+. +.+.. .++..|..|+.++|.+... . -+ +.+
T Consensus 28 ~~vr~~A~~~L~~~~---~~~~~~~L~----~~l~~--------~~~~vr~~a~~~L~~~~~~-----~---~~-~~L-- 81 (201)
T 3ltj_A 28 YYVRRAAAYALGKIG---DERAVEPLI----KALKD--------EDAWVRRAAADALGQIGDE-----R---AV-EPL-- 81 (201)
T ss_dssp HHHHHHHHHHHHHHC---CGGGHHHHH----HHTTC--------SSHHHHHHHHHHHHHHCCG-----G---GH-HHH--
T ss_pred HHHHHHHHHHHHhcC---ChhHHHHHH----HHHcC--------CCHHHHHHHHHHHHhhCCH-----H---HH-HHH--
Confidence 567887777776542 234444444 45543 2788999999999887532 1 11 112
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
...+.++++.+|..|++.++++.. + ..++.++..|.|++..||..|+.+|..+-
T Consensus 82 --~~~l~d~~~~vr~~a~~aL~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 82 --IKALKDEDGWVRQSAAVALGQIGD-----E----RAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp --HHHTTCSSHHHHHHHHHHHHHHCC-----G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred --HHHHcCCCHHHHHHHHHHHHHhCc-----H----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 224568899999999999998854 2 24566777888999999999999999873
No 69
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.37 E-value=0.073 Score=55.74 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHh
Q 002257 298 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 377 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~ 377 (946)
..|..|...|..+.. ....++.+++.+...+.+. .++..|.+++.++|.+...... ....+ ...
T Consensus 69 ~vR~~A~~aL~~l~~--~~~~~~~l~~~L~~~~~~d-------~~~~vr~~a~~aL~~l~~~~~~---~~~~~----~~~ 132 (280)
T 1oyz_A 69 IRRDIGAFILGQIKI--CKKCEDNVFNILNNMALND-------KSACVRATAIESTAQRCKKNPI---YSPKI----VEQ 132 (280)
T ss_dssp HHHHHHHHHHHHSCC--CTTTHHHHHHHHHHHHHHC-------SCHHHHHHHHHHHHHHHHHCGG---GHHHH----HHH
T ss_pred HHHHHHHHHHHHhcc--ccccchHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCc---ccHHH----HHH
Confidence 356667766655431 2334555555554332221 2788999999999998754211 11122 233
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHH
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 457 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~i 457 (946)
+...++++++.+|..|++.+|++.. + ..++.++..+.|++..||..|+.||..+-. .-+.+
T Consensus 133 L~~~l~d~~~~vR~~a~~aL~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~ 193 (280)
T 1oyz_A 133 SQITAFDKSTNVRRATAFAISVIND-----K----ATIPLLINLLKDPNGDVRNWAAFAININKY----------DNSDI 193 (280)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHTC------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC----------CCHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHhcCC-----H----HHHHHHHHHHcCCCHHHHHHHHHHHHhhcc----------CcHHH
Confidence 3445678999999999999998764 1 246677788889989999999999987621 12356
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHH
Q 002257 458 LDEFFKLMNEVENEDLVFTLETIVD 482 (946)
Q Consensus 458 l~~Ll~ll~~~~~e~l~~~L~~iv~ 482 (946)
+..|..+++..+.+.-..++..+..
T Consensus 194 ~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 194 RDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 6677777765443333445544433
No 70
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.31 E-value=0.34 Score=55.65 Aligned_cols=256 Identities=12% Similarity=0.088 Sum_probs=137.5
Q ss_pred cCHHHHHHHHHHHHHHhcCc--ccH--HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHH-H
Q 002257 297 YSPRTASMDFVSELVRKRGK--ENL--QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL-E 371 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~--~~l--~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l-~ 371 (946)
...|..|...|..++..... .++ +..++.+...+.+. .+|..+..+..+++.++..-. ....+ +
T Consensus 31 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-------~~~~~~~~a~~~L~~ls~~~~----~~~~i~~ 99 (529)
T 1jdh_A 31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTAGTLHNLSHHRE----GLLAIFK 99 (529)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTTSHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcCch----hHHHHHH
Confidence 34577788888888764321 111 12344444555431 267888888888888765411 00000 0
Q ss_pred HHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhH--HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc-cccc
Q 002257 372 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC-RDLN 448 (946)
Q Consensus 372 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~--~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~-~~~~ 448 (946)
.-....++..++++.+-+|..|+|.++..+...-..... -..+++.+++.|.+++..++..|+.+|.++.... +...
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~ 179 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 001123333466778999999999999997532011111 2457889999999888889999999999887642 1122
Q ss_pred ccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHH-HHHHHHHHHHhhccCCCCCCChhhHHHHHH
Q 002257 449 EIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ-NLAAAFWRCMNTAEADEDADDPGALAAVGC 527 (946)
Q Consensus 449 ~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~-~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 527 (946)
.+... ..++.|+.++...+.+........++..+... ......+.. ..+..+.++.+ ++ + ......+
T Consensus 180 ~i~~~--~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~----~~----~-~~~~~~a 247 (529)
T 1jdh_A 180 IILAS--GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLT----DP----S-QRLVQNC 247 (529)
T ss_dssp HHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTT----SS----C-HHHHHHH
T ss_pred HHHHC--CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHh----CC----C-hHHHHHH
Confidence 22111 34566666776555444443333333222211 001111111 12222223332 11 1 1122334
Q ss_pred HHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 002257 528 LRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 580 (946)
Q Consensus 528 l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~ 580 (946)
+.++..+...... .. ....++|.+...+..+..+....+...+..+..
T Consensus 248 ~~~L~~l~~~~~~-~~----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 248 LWTLRNLSDAATK-QE----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHHHHTTCTT-CS----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCChh-hH----HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 5555555443211 11 123567888888877777888888888888864
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.27 E-value=0.069 Score=53.18 Aligned_cols=107 Identities=22% Similarity=0.341 Sum_probs=74.5
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
...|..|...|..+. ....++.+. +.+.. .++..|..++.++|.+... .. + +.+
T Consensus 33 ~~vR~~A~~~L~~~~---~~~~~~~L~----~~l~~--------~~~~vr~~a~~aL~~~~~~-----~~---~-~~L-- 86 (211)
T 3ltm_A 33 YYVRRAAAYALGKIG---DERAVEPLI----KALKD--------EDAWVRRAAADALGQIGDE-----RA---V-EPL-- 86 (211)
T ss_dssp HHHHHHHHHHHHHHC---CGGGHHHHH----HHTTC--------SCHHHHHHHHHHHHHHCCG-----GG---H-HHH--
T ss_pred HHHHHHHHHHHHHhC---CccHHHHHH----HHHcC--------CCHHHHHHHHHHHHhhCCH-----HH---H-HHH--
Confidence 556777776665542 234444444 45543 2788999999999987632 11 1 222
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 440 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~ 440 (946)
...+.++++.+|..|++.++++.. + ..++.++..|.|++..||..|+.+|..+
T Consensus 87 --~~~l~~~~~~vr~~a~~aL~~~~~-----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 87 --IKALKDEDGWVRQSAAVALGQIGD-----E----RAVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp --HHHTTCSSHHHHHHHHHHHHHHCC-----G----GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred --HHHHcCCCHHHHHHHHHHHHHhCc-----H----HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 234578899999999999998864 2 2456777888899999999999999987
No 72
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.17 E-value=1 Score=55.08 Aligned_cols=224 Identities=12% Similarity=0.187 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHhhhhcCCcchHHHHHHHHH---hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 002257 347 DGALLAIGALCDKLKQTEPYKSELERMLVQ---HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 423 (946)
Q Consensus 347 eaal~alg~ia~~l~~~~~~~~~l~~~l~~---~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~ 423 (946)
|+|+.+++.++....... .+|+++.. .++-.+.+...-+|..|-..+..+.... +++....+++.+++.|.
T Consensus 70 ~~a~~~~~~~~~~~~~~~----~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~--~~~a~~~~~~~~~~~~~ 143 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSP----SVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV--NPVAIKALLPHLTNAIV 143 (986)
T ss_dssp HHHHHHHHHHTCTTTCCT----TTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC----CcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHhc
Confidence 999999999997654322 23555543 2222344667789999888877776533 66677999999999997
Q ss_pred CC-CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhH---HHHHHHHHHhhC-CcccccHHHHHHH
Q 002257 424 DP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDL---VFTLETIVDKFG-EEMAPYALGLCQN 498 (946)
Q Consensus 424 d~-~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l---~~~L~~iv~~~~-~~i~p~~~~l~~~ 498 (946)
+. .-..++.|...+..+.+. .++.+.-.++.++..+...|-....|.- ..+|..++...+ .+|.|+.+.|+..
T Consensus 144 ~~~kw~~k~~~l~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~ 221 (986)
T 2iw3_A 144 ETNKWQEKIAILAAFSAMVDA--AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQC 221 (986)
T ss_dssp HCCCHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHH--hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHH
Confidence 54 457999999999999987 4788899999999999999988766653 456666666554 6799999998876
Q ss_pred HHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHH
Q 002257 499 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM 578 (946)
Q Consensus 499 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l 578 (946)
+. +|+ + +-+|+..+ .+..-..++...--..+.|++...|.......-.-+.-++.+|
T Consensus 222 ~~------------~p~---~-------~~~~~~~l-~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~ 278 (986)
T 2iw3_A 222 IA------------DPT---E-------VPETVHLL-GATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNM 278 (986)
T ss_dssp HH------------CTT---H-------HHHHHHHH-TTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred hc------------Chh---h-------hHHHHHHh-hcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcch
Confidence 65 551 1 22232222 2211111112222346899999999766544445666677777
Q ss_pred HhcCC---CCCHHHHHHHHHHHHHHh
Q 002257 579 TFFSP---TISLEMWSLWPLMMEALA 601 (946)
Q Consensus 579 ~~~~~---~i~p~l~~l~~~l~~~~~ 601 (946)
.+.-. .+.|.+..++|-+-+...
T Consensus 279 ~~lv~~~~~~~~f~~~l~p~~~~~~~ 304 (986)
T 2iw3_A 279 CKLVEDPQVIAPFLGKLLPGLKSNFA 304 (986)
T ss_dssp HTTCCCHHHHHHHHTTTHHHHHHHTT
T ss_pred hhhcCCHHHHhhhhhhhhhHHHHHhh
Confidence 65431 233445566666655544
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.09 E-value=1 Score=50.81 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=77.0
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHH-HHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHH-----H
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSE-LERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-----L 415 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~-l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~-----~ 415 (946)
++..+..|..+++.++.+- .+.... ++.-....++..+.++++-++..|+|.+..++.. +++....+ +
T Consensus 15 ~~~~q~~A~~~L~~l~~~~---~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~---~~~~k~~i~~~G~i 88 (457)
T 1xm9_A 15 DEKYQAIGAYYIQHTCFQD---ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR---STTNKLETRRQNGI 88 (457)
T ss_dssp CTHHHHHHHHHHHHHTSSC---SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHcCC---hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCH
Confidence 5677888888888877431 111101 1111123444456788899999999999999752 34444444 7
Q ss_pred HHHHhcCC-CCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHH
Q 002257 416 HSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 465 (946)
Q Consensus 416 ~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll 465 (946)
+.++++|. +.+..++..|+.||.++....+.+..+. ...+..|+.++
T Consensus 89 ~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~---~g~i~~Lv~ll 136 (457)
T 1xm9_A 89 REAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI---ADALPVLADRV 136 (457)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH---HHHHHHHHHHT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH---hccHHHHHHHH
Confidence 88999998 6778899999999999998743333332 25667777777
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.08 E-value=0.43 Score=51.76 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=113.7
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchH--HHHHHHHHhcccC------C-CCCccchhHHHHHHHHhhhccccCChhHH-
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKS--ELERMLVQHVFPE------F-SSPVGHLRAKAAWVAGQYAHINFSDQNNF- 411 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~--~l~~~l~~~v~p~------l-~~~~~~lr~ra~~~l~~~~~~~f~~~~~~- 411 (946)
.-..+..|+.+|+-++..- +..+... ...+.+...+..+ . .+.++-+|..|+|.++..+.-.-......
T Consensus 45 ~~~~~~~A~~aL~nls~d~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3466678889999888651 1111100 0111122222111 0 12357799999999999874210001111
Q ss_pred --HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc--ccccccccchHHHHHHHHHHHhhhh-hhhHH---HHHHHHHHh
Q 002257 412 --RKALHSVVSGLRDPELPVRVDSVFALRSFVEAC--RDLNEIRPILPQLLDEFFKLMNEVE-NEDLV---FTLETIVDK 483 (946)
Q Consensus 412 --~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~--~~~~~l~p~l~~il~~Ll~ll~~~~-~e~l~---~~L~~iv~~ 483 (946)
.-+++.+++.|.+++..|+..|+.||.++.... ..+..+.. ...+..|+.++.... .+... .+|..+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH--CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 235889999999888899999999999998641 12333321 124555555543322 22232 333333221
Q ss_pred hCCcccccHHHHH--HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHH-HhhHHHHHHHhc
Q 002257 484 FGEEMAPYALGLC--QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRML 560 (946)
Q Consensus 484 ~~~~i~p~~~~l~--~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l 560 (946)
.++..+ .++ ...+..+.+++... ++....+-...+.+++..++..+. ..++....+ +.-.+|.+...|
T Consensus 202 -~~~nk~---~i~~~~Gai~~Lv~lL~~~--~~~~~~~v~~~A~~aL~nLs~~~a---~~~~~~~~i~~~g~i~~Lv~lL 272 (354)
T 3nmw_A 202 -CTENKA---DICAVDGALAFLVGTLTYR--SQTNTLAIIESGGGILRNVSSLIA---TNEDHRQILRENNCLQTLLQHL 272 (354)
T ss_dssp -CHHHHH---HHHHSTTHHHHHHHHTTCC--CSSSCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHTTTHHHHHHHHT
T ss_pred -ChhhhH---HHHHhcCcHHHHHHHhccC--CCcccHHHHHHHHHHHHHHHhhcc---CCHHHHHHHHHcCCHHHHHHHH
Confidence 111111 111 11222233444321 110000111223344444433221 233333333 344788888888
Q ss_pred ccchhhHHHHHHHHHHHHHh
Q 002257 561 TTDGQEVFEEVLEIVSYMTF 580 (946)
Q Consensus 561 ~~~~~~~~~~~l~ll~~l~~ 580 (946)
........+++.-.+..+..
T Consensus 273 ~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 273 KSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp TCSCHHHHHHHHHHHHHHTS
T ss_pred cCCChHHHHHHHHHHHHHhC
Confidence 88777788888888888763
No 75
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.60 E-value=0.1 Score=54.63 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=79.4
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
..+|.+|...|..+....+ ...+.+.+.+...++. .++..|.+|..++|.+... ... +
T Consensus 105 ~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d--------~~~~vR~~a~~aL~~~~~~-----~~~----~---- 162 (280)
T 1oyz_A 105 ACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFD--------KSTNVRRATAFAISVINDK-----ATI----P---- 162 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHTC--------CCH----H----
T ss_pred HHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhC--------CCHHHHHHHHHHHHhcCCH-----HHH----H----
Confidence 4478888888888875432 1223445555555543 2788999999999976542 111 1
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHH
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~ 441 (946)
.+...+.++++.+|..|+|.+|++.. . + ..+++.++..+.|++..||..|+.+|..+-
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~-~--~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKY-D--N----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTC-C--C----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcc-C--c----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 12223567889999999999999853 1 2 246778888899999999999999998764
No 76
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=94.42 E-value=9.3 Score=43.99 Aligned_cols=360 Identities=10% Similarity=0.104 Sum_probs=171.2
Q ss_pred CCCCCccchhHHHHHHHHhhhccccCChhHHH-----HHHHHHHhcCCCCCCchHHHHHHHHHHHHHh--cccccccccc
Q 002257 381 EFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALHSVVSGLRDPELPVRVDSVFALRSFVEA--CRDLNEIRPI 453 (946)
Q Consensus 381 ~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~--~~~~~~l~p~ 453 (946)
.|.++++-++..|+|.+...+. .+.+... -.++.+++.|.+++..|+..|+.||.++... .+.+..+...
T Consensus 56 ~L~s~~~~~q~~Aa~~L~~La~---~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~ 132 (584)
T 3l6x_A 56 MLGFRLDAVKSNAAAYLQHLCY---RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC 132 (584)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHc---CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc
Confidence 4567788899999999988863 1232222 3578999999988899999999999999863 2234444332
Q ss_pred hHHHHHHHHHHHhhhhh----hhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHH---hhccCCCCCCChhhHH--H
Q 002257 454 LPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCM---NTAEADEDADDPGALA--A 524 (946)
Q Consensus 454 l~~il~~Ll~ll~~~~~----e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~---~~~~~d~~~~~~~~~~--~ 524 (946)
..+..|+.++..... +....+|-.+.. .+. .-..++..-+..+.++. ..+-.+......+... -
T Consensus 133 --GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~--~~~---~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 133 --DGVPALVRLLRKARDMDLTEVITGTLWNLSS--HDS---IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp --THHHHHHHHHHHCCSHHHHHHHHHHHHHHTT--SGG---GHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred --CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cch---hhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 355666666664322 222334444322 111 11112111112222221 0000000000000000 0
Q ss_pred HHHHHHHHHHHHhhcC-ChhHHHHHH--hhHHHHHHHhccc------chhhHHHHHHHHHHHHHhcC----CCC------
Q 002257 525 VGCLRAISTILESVSR-LPHLFVQIE--PTLLPIMRRMLTT------DGQEVFEEVLEIVSYMTFFS----PTI------ 585 (946)
Q Consensus 525 ~~~l~ti~~ll~~~~~-~~~~~~~l~--~~l~p~i~~~l~~------~~~~~~~~~l~ll~~l~~~~----~~i------ 585 (946)
..++.....+++.+.. .++....+. .-+++.+...++. ......+.++-.|..+.+.. +..
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 1334444455555533 222222222 1233333333332 22346677777777666542 100
Q ss_pred ---------------CHHHH--HHHHHHHHHHhh-hHhhhHhhhHHHHHHHHhcCcccccccCCCchH--HHHHHHHHHH
Q 002257 586 ---------------SLEMW--SLWPLMMEALAD-WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQ--QSLWSMVSSI 645 (946)
Q Consensus 586 ---------------~p~l~--~l~~~l~~~~~~-~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~--~~i~~i~~~l 645 (946)
-+.+| ...+.++..+.. ...........+|.|....... .-. .....+ +..+..+.++
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~-~~~-~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT-YGR-YIRSALRQEKALSAIADL 363 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH-HHH-HHHHHHTSHHHHHHHHHG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc-ccH-HHHHHHHHcCcHHHHHHH
Confidence 01223 345666666542 2245556666777775432211 000 000011 3345666777
Q ss_pred HcCCCCCCcccCchhhHHHHHHHHcccCchhchHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHhhCHHHHHH
Q 002257 646 MADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE-------KSYLKCLLVQVIADALYYNSSLTLS 718 (946)
Q Consensus 646 l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~L~~~~-------~~~~~~~~l~v~~~~~~~~~~~~l~ 718 (946)
|.+. ++.....|+..+..+...-..+ ..+-...+..+++.|.... ...+....+..+..++..++...-.
T Consensus 364 L~s~--~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~ 440 (584)
T 3l6x_A 364 LTNE--HERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440 (584)
T ss_dssp GGCS--CHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCC--CHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 7654 3333455677766665432211 1111233333433333321 1234444555555555667887776
Q ss_pred HHHhcCchHHHHHHHHHhHHHHhhhccccccccchhhHHHHHHHHHHhcc
Q 002257 719 ILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL 768 (946)
Q Consensus 719 ~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~Ll~~ 768 (946)
+.+. |....+... +.. +-.....+|.....|+.+...
T Consensus 441 I~~~-g~I~~Lv~L-L~s-----------~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 441 LRET-QGIEKLVLI-NKS-----------GNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHT-THHHHHHHH-HTC-----------SSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHC-CChHHHHHH-HhC-----------CCCChHHHHHHHHHHHHHHcC
Confidence 6665 455444432 211 112456788888888888754
No 77
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.16 E-value=5.3 Score=46.00 Aligned_cols=333 Identities=11% Similarity=0.090 Sum_probs=161.4
Q ss_pred cccCCCCCccchhHHHHHHHHhhhccccCChhHHH------HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR------KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 451 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~------~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~ 451 (946)
++..|++...++|.-+..++...+... +...-. .-++.++..|.|+.-++|-.|...|..+.... ..++
T Consensus 127 Ll~lL~~~df~vR~~alqlL~~L~~~r--~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n---~~iQ 201 (651)
T 3grl_A 127 LLSLLEEFDFHVRWPGVKLLTSLLKQL--GPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN---GAIQ 201 (651)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHhcC--cHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC---HHHH
Confidence 344567788899999999999887532 221222 35677889999988999999999999998874 2333
Q ss_pred cc--hHHHHHHHHHHHhhhhh----hhHHHHHHHHHHhhCCcc--cccHHH--HHHHHHHHHHHHHhhccCCCCCC--Ch
Q 002257 452 PI--LPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEM--APYALG--LCQNLAAAFWRCMNTAEADEDAD--DP 519 (946)
Q Consensus 452 p~--l~~il~~Ll~ll~~~~~----e~l~~~L~~iv~~~~~~i--~p~~~~--l~~~L~~~~~~~~~~~~~d~~~~--~~ 519 (946)
.. .+..++.|+.++..-+. ..+-.|+.-+..-.+.+. ..|..+ .+++|. .+.+. +++... +.
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~----~LL~~--~~~~~~W~~Q 275 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMK----PWFEV--GDENSGWSAQ 275 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGG----GGGCC--CSCSSCCCHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH----HHhCC--CccccccHHH
Confidence 22 23567888888865322 123344444332222210 001110 111121 11111 011000 11
Q ss_pred hhHHHHHHHHHHHHHHHhhcC---ChhHHHHH-H-hhHHHHHHHhcccc-hhhHHHHHHHHHHHHHhcCCC---------
Q 002257 520 GALAAVGCLRAISTILESVSR---LPHLFVQI-E-PTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFSPT--------- 584 (946)
Q Consensus 520 ~~~~~~~~l~ti~~ll~~~~~---~~~~~~~l-~-~~l~p~i~~~l~~~-~~~~~~~~l~ll~~l~~~~~~--------- 584 (946)
+..-..+.+++|..++..-+. .+..-..+ . ..+.+++...+... ......+++..++.+++..+.
T Consensus 276 k~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 276 KVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 222223345555444443111 11111122 1 22344445445433 235667777777776654310
Q ss_pred ---CC--HHHHHHHHHHHHHHhh-hHhhhHhhhHHHHHHHHhcCcc---c----ccccC-----CC-chHHHHHHHHHHH
Q 002257 585 ---IS--LEMWSLWPLMMEALAD-WAIDFFPNILVPLDNYISRGTA---H----FLTCK-----EP-DYQQSLWSMVSSI 645 (946)
Q Consensus 585 ---i~--p~l~~l~~~l~~~~~~-~~~~~l~~~~~~L~~~i~~~~~---~----~l~~~-----~~-~~~~~i~~i~~~l 645 (946)
.+ |.+.. .++....+ ...+.--+...++++|+....+ . ++... ++ +.... ++..+
T Consensus 356 vp~~~~~p~li~---lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~l---l~~~l 429 (651)
T 3grl_A 356 APSNPPRPAIVV---LLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQL---LCGGL 429 (651)
T ss_dssp ESSSSCEEHHHH---HHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHH---HHHHH
T ss_pred CCCCCCcChHHH---HHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchh---hhhhh
Confidence 00 11222 22222211 1123334566788888766542 1 22110 00 11111 12222
Q ss_pred HcCCCCCCcccCchhhHHHHHHHHccc------------CchhchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhCH
Q 002257 646 MADKNLEDGDIEPAPKLIEVVFQNCKG------------QVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNS 713 (946)
Q Consensus 646 l~~~~~~~~~~~~a~~ll~~il~~~~~------------~~~~~l~~il~~~~~~L~~~~~~~~~~~~l~v~~~~~~~~~ 713 (946)
+ + .+....++|+-++..++...+. ..+.-....++.+...|........+..++.+.+.-++-+|
T Consensus 430 ~-s--~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p 506 (651)
T 3grl_A 430 F-S--TDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP 506 (651)
T ss_dssp T-S--SCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH
T ss_pred c-c--CchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh
Confidence 2 2 1333446677666666654321 11111123455544444443344566667777777778899
Q ss_pred HHHHHHHHhcCchHHHH
Q 002257 714 SLTLSILHKLGVATEVF 730 (946)
Q Consensus 714 ~~~l~~L~~~~~~~~~~ 730 (946)
.++-++|.+...+..+.
T Consensus 507 ~AV~dFL~~~s~l~~L~ 523 (651)
T 3grl_A 507 IAVTHFLHNSANVPFLT 523 (651)
T ss_dssp HHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHcCCchHHHHH
Confidence 99999998754443333
No 78
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.10 E-value=0.68 Score=43.81 Aligned_cols=135 Identities=14% Similarity=0.174 Sum_probs=85.3
Q ss_pred cccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhh--------------
Q 002257 295 DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL-------------- 360 (946)
Q Consensus 295 d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l-------------- 360 (946)
|.|+++.-|..++.++++.+++ ...++..-+..++.... ..-.--..-.++|.++..-
T Consensus 44 DlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksE-------aIpltqeIa~a~G~la~i~Pe~v~~vVp~lfan 115 (253)
T 2db0_A 44 DLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSE-------AIPLTQEIAKAFGQMAKEKPELVKSMIPVLFAN 115 (253)
T ss_dssp SCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCC-------SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcc-------cCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHH
Confidence 5699999999999999998854 44444444444444321 1122222333444444320
Q ss_pred -------------------hcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 361 -------------------KQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 361 -------------------~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
...+ +.+...+..-+...+.|++..=|..|+.|+|-.++- ...+....++-++..
T Consensus 116 yrigd~kikIn~~yaLeeIaran---P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen---~~~yv~PfLprL~aL 189 (253)
T 2db0_A 116 YRIGDEKTKINVSYALEEIAKAN---PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN---SFKYVNPFLPRIINL 189 (253)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT---THHHHGGGHHHHHGG
T ss_pred HhcCCccceecHHHHHHHHHHhC---hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc---CccccCcchHHHHHH
Confidence 0001 112222333444456678888888888888888762 235777788888999
Q ss_pred CCCCCCchHHHHHHHHHHHHHh
Q 002257 422 LRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
|.|.+-.||.+|..+|..+...
T Consensus 190 L~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 190 LHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTS
T ss_pred HcCcchhhhHHHHHHHHHHHHc
Confidence 9888889999999998888775
No 79
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=94.06 E-value=1.1 Score=51.61 Aligned_cols=158 Identities=13% Similarity=0.082 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHhcCc---ccHH-HHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhh-hcCCcchHHHHHH
Q 002257 299 PRTASMDFVSELVRKRGK---ENLQ-KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL-KQTEPYKSELERM 373 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~~~---~~l~-~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l-~~~~~~~~~l~~~ 373 (946)
.+..|+..|..++..... .+.. -.++.+.+.|.+. +...++.|..+|+.++.+- .+.+..... .-
T Consensus 64 ~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~--------~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~--~G 133 (584)
T 3l6x_A 64 VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP--------KKEVHLGACGALKNISFGRDQDNKIAIKN--CD 133 (584)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS--------SHHHHHHHHHHHHHHTSSSCHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC--------CHHHHHHHHHHHHHHHccCCHHHHHHHHH--cC
Confidence 344455667777653211 1111 1234445666542 6688999999999998641 111000000 00
Q ss_pred HHHhcccCCCC-CccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcC-----------------C-CCCCchHHHHH
Q 002257 374 LVQHVFPEFSS-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-----------------R-DPELPVRVDSV 434 (946)
Q Consensus 374 l~~~v~p~l~~-~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L-----------------~-d~~~~V~~~Aa 434 (946)
-...++..|.+ ..+-++..|++++...+...-.........++.+++.+ . ..+.-|+..|+
T Consensus 134 aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa 213 (584)
T 3l6x_A 134 GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTA 213 (584)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHH
Confidence 01122222333 45678888888887776522111133345566676655 1 12457999999
Q ss_pred HHHHHHHHhcc-cccccccchHHHHHHHHHHHhh
Q 002257 435 FALRSFVEACR-DLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 435 ~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
.+|.++....+ .+..+... +.++..|+.+++.
T Consensus 214 ~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 214 GCLRNVSSERSEARRKLREC-DGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHH
Confidence 99999986532 13333321 2344555555543
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.75 E-value=0.097 Score=47.71 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=56.8
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+|..|..|+.++|.+... .-+ +.+. ..+.++++.+|..|+|.+|++.. ...++.++..
T Consensus 55 ~~~vR~~A~~aL~~~~~~--------~a~-~~L~----~~L~d~~~~VR~~A~~aL~~~~~---------~~a~~~L~~~ 112 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQDE--------RAV-EPLI----KLLEDDSGFVRSGAARSLEQIGG---------ERVRAAMEKL 112 (131)
T ss_dssp CHHHHHHHHHHHGGGCSH--------HHH-HHHH----HHHHHCCTHHHHHHHHHHHHHCS---------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCH--------HHH-HHHH----HHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHH
Confidence 789999999999887632 011 1122 22357899999999999998863 2356777888
Q ss_pred CCCCCCchHHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRS 439 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~ 439 (946)
+.|++..||..|+.||..
T Consensus 113 l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 113 AETGTGFARKVAVNYLET 130 (131)
T ss_dssp TTSCCTHHHHHHHHHGGG
T ss_pred HhCCCHHHHHHHHHHHHh
Confidence 888899999999999864
No 81
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.41 Score=50.00 Aligned_cols=196 Identities=11% Similarity=0.119 Sum_probs=112.6
Q ss_pred hhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCccc--------HHHHHHHHHHhhcccCCCCcCCCCc
Q 002257 272 DNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKEN--------LQKFIQFIVGIFKRYDETPVEYKPY 343 (946)
Q Consensus 272 ~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~--------l~~ll~~i~~~l~~~~~~~~~~~~~ 343 (946)
.+|.+.|..=|- .+... +-.|..|..|.+-+..+....+... +..+...+...+.. .|.
T Consensus 3 ~~e~~d~sklpl---~e~l~--sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D--------sN~ 69 (278)
T 4ffb_C 3 GEEEVDYTTLPL---EERLT--YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD--------SNV 69 (278)
T ss_dssp --------CCCH---HHHTT--CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC--------SSH
T ss_pred CcchhhhhcCCH---HHhcc--cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc--------chH
Confidence 344455655552 22322 2348889999887777665432211 11112222233322 277
Q ss_pred hhHhHHHHHHHHHHhhhhcCCcchH----HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHH
Q 002257 344 RQKDGALLAIGALCDKLKQTEPYKS----ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVV 419 (946)
Q Consensus 344 ~~keaal~alg~ia~~l~~~~~~~~----~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~ 419 (946)
...+.++.++..++..+........ .+..++...+--.+.+..+-+|..|.-++-.+..... ....+++.++
T Consensus 70 ~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----~~~~~~e~l~ 145 (278)
T 4ffb_C 70 VAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----SITQSVELVI 145 (278)
T ss_dssp HHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----SSHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----cHHHHHHHHH
Confidence 8889999999988876542111111 1122221111123567788899999888877765321 2334677888
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccc-cccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Q 002257 420 SGLRDPELPVRVDSVFALRSFVEACRDL-NEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF 484 (946)
Q Consensus 420 ~~L~d~~~~V~~~Aa~Al~~~~~~~~~~-~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~ 484 (946)
..+.+.++.|+..++..|.+++...... -..++.++.++..+..+++..+.+.-..+++.+++.|
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 8898888999999999999999875322 2346678888888888888776655455555554443
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.51 E-value=0.22 Score=53.64 Aligned_cols=109 Identities=7% Similarity=0.099 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHh
Q 002257 320 QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQ 399 (946)
Q Consensus 320 ~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~ 399 (946)
..++.-+...+++ ++...|--+|+.+..++.. .+ ... +..+.+..++++++|++|+-|+.++++
T Consensus 67 t~lf~~v~kl~~s--------~d~~lKrLvYLyl~~~~~~-~~--e~i-----Lv~Nsl~kDl~~~N~~iR~lALRtL~~ 130 (355)
T 3tjz_B 67 TEAFFAMTKLFQS--------NDPTLRRMCYLTIKEMSCI-AE--DVI-----IVTSSLTKDMTGKEDSYRGPAVRALCQ 130 (355)
T ss_dssp HHHHHHHHGGGGC--------CCHHHHHHHHHHHHHHTTT-SS--CGG-----GGHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--------CCHHHHHHHHHHHHHhCCC-HH--HHH-----HHHHHHHhhcCCCcHhHHHHHHHHHhc
Confidence 3445445566654 2778888888888887765 11 111 234566667889999999999999988
Q ss_pred hhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc
Q 002257 400 YAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 451 (946)
Q Consensus 400 ~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~ 451 (946)
... ++....+.+.+-++|.|.++-||-.|+.|...++.. .++.++
T Consensus 131 I~~-----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe~v~ 175 (355)
T 3tjz_B 131 ITD-----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFDVVK 175 (355)
T ss_dssp HCC-----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHHHHH
T ss_pred CCC-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHHHHH
Confidence 854 468889999999999999999999999999888776 344443
No 83
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=93.38 E-value=16 Score=43.17 Aligned_cols=122 Identities=9% Similarity=0.067 Sum_probs=73.9
Q ss_pred hhHhHHHHHHHHHHhhhhc-CCcchH-HHH-HHHHHhcccCCCCCccchhHHHHHHHHhhhcc------ccCChh--HHH
Q 002257 344 RQKDGALLAIGALCDKLKQ-TEPYKS-ELE-RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI------NFSDQN--NFR 412 (946)
Q Consensus 344 ~~keaal~alg~ia~~l~~-~~~~~~-~l~-~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~------~f~~~~--~~~ 412 (946)
..+.-|++|++.+|..=.. ..+... -+. .-..+.+...+.+++..+|+.|||+++.++.. +|-+.+ ...
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhh
Confidence 5588899999998875210 000100 111 01123344445578899999999999998531 221111 112
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc--cccccccchHHHHHHHHHHHhh
Q 002257 413 KALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 413 ~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~--~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
.-++.++..+...+..+|..|+.||.++....+ ....+. .+..++.++.++.+
T Consensus 654 ~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~--~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 654 RNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT--KKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH--ccccHHHHHHHHhc
Confidence 347888999988899999999999999865321 111111 13566677777766
No 84
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.21 E-value=2.2 Score=47.97 Aligned_cols=157 Identities=10% Similarity=0.077 Sum_probs=87.1
Q ss_pred cCHHHHHHHHHHHHHHhcCc---ccH-HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHH-H
Q 002257 297 YSPRTASMDFVSELVRKRGK---ENL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL-E 371 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~---~~l-~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l-~ 371 (946)
...+..|...|..++...+. .+. .-.++.+.+.|.+ .+...++.|..+++.++..-.+. +..+ +
T Consensus 16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s--------~~~~~~~~A~~aL~nLa~~~~~~---k~~i~~ 84 (457)
T 1xm9_A 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS--------PNQNVQQAAAGALRNLVFRSTTN---KLETRR 84 (457)
T ss_dssp THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHSSCHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCHHH---HHHHHH
Confidence 34577778888888754321 111 1123444455553 15678899999999998641110 0000 0
Q ss_pred HHHHHhcccCCC-CCccchhHHHHHHHHhhhccccCCh-hHHHHHHHHHHhcC--------CCC--------CCchHHHH
Q 002257 372 RMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGL--------RDP--------ELPVRVDS 433 (946)
Q Consensus 372 ~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~-~~~~~~~~~l~~~L--------~d~--------~~~V~~~A 433 (946)
.--...++..+. ++++-+|..|+|+++..+... ... ......++.+++.| .++ +..|...|
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 000112222345 567889999999999998632 111 23337788888888 222 23456699
Q ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHHHh
Q 002257 434 VFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 466 (946)
Q Consensus 434 a~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~ 466 (946)
+.||.+++...+....+... +.+++.|+.++.
T Consensus 164 ~~aL~nLs~~~~~~~~i~~~-~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 164 TGCLRNLSSADAGRQTMRNY-SGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHTTSHHHHHHHTTS-TTHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHc-CCCHHHHHHHHH
Confidence 99999999763333333311 134444555554
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=91.90 E-value=0.16 Score=46.24 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=56.3
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 421 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~ 421 (946)
+|..|.+|+.++|.+... .+ +.+ ...++++++.+|..|+|.+|++.. + ..++.++..
T Consensus 25 ~~~vR~~A~~~L~~~~~~---------~~-~~L----~~~L~d~~~~vR~~A~~aL~~~~~-----~----~a~~~L~~~ 81 (131)
T 1te4_A 25 NKWVRRDVSTALSRMGDE---------AF-EPL----LESLSNEDWRIRGAAAWIIGNFQD-----E----RAVEPLIKL 81 (131)
T ss_dssp CCCSSSSCCSSTTSCSST---------TH-HHH----HHGGGCSCHHHHHHHHHHHGGGCS-----H----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCch---------HH-HHH----HHHHcCCCHHHHHHHHHHHHhcCC-----H----HHHHHHHHH
Confidence 677788888887754321 12 222 234568899999999999988753 2 346667777
Q ss_pred CCCCCCchHHHHHHHHHHHH
Q 002257 422 LRDPELPVRVDSVFALRSFV 441 (946)
Q Consensus 422 L~d~~~~V~~~Aa~Al~~~~ 441 (946)
|.|++..||..|+.||..+-
T Consensus 82 L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 82 LEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHCCTHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHhC
Confidence 78899999999999999764
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.62 E-value=2.9 Score=46.81 Aligned_cols=183 Identities=12% Similarity=0.103 Sum_probs=97.1
Q ss_pred CccchhHHHHHHHHhhhccccCCh--hHH---HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc--ccccccccchHHH
Q 002257 385 PVGHLRAKAAWVAGQYAHINFSDQ--NNF---RKALHSVVSGLRDPELPVRVDSVFALRSFVEAC--RDLNEIRPILPQL 457 (946)
Q Consensus 385 ~~~~lr~ra~~~l~~~~~~~f~~~--~~~---~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~--~~~~~l~p~l~~i 457 (946)
.++-++..|+|.++..+.-. ++ ... .-+++.+++.|.+++..|+..|+.||.++.... ..+..+.. ...
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~--~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~--~Ga 287 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGS 287 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH--TTH
T ss_pred CCHHHHHHHHHHHHHHhCCC--cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCC
Confidence 35778999999999987422 11 122 245889999999888899999999999987631 12233321 134
Q ss_pred HHHHHHHHhhhhh-hhHH---HHHHHHHHhhCCcccccHHHHH--HHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHH
Q 002257 458 LDEFFKLMNEVEN-EDLV---FTLETIVDKFGEEMAPYALGLC--QNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAI 531 (946)
Q Consensus 458 l~~Ll~ll~~~~~-e~l~---~~L~~iv~~~~~~i~p~~~~l~--~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti 531 (946)
+..|+.++..... +... .+|..+.... ++..+ .++ ...+..+.+++......+ ..+-...+.+++..+
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~-~~nk~---~I~~~~Gal~~Lv~LL~~~~~~~--~~~v~~~A~~aL~nL 361 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHC-TENKA---DICAVDGALAFLVGTLTYRSQTN--TLAIIESGGGILRNV 361 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC-HHHHH---HHHHSTTHHHHHHHHTTCCCSSS--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-HHHHH---HHHHhcCcHHHHHHHhcCCCCcc--hHHHHHHHHHHHHHH
Confidence 5566665433322 2222 3444443311 11111 111 112222334443211000 000111233344433
Q ss_pred HHHHHhhcCChhHHHHH-HhhHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 002257 532 STILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 580 (946)
Q Consensus 532 ~~ll~~~~~~~~~~~~l-~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~ 580 (946)
+.. +...++....+ +.-.+|.+...|........+++.-.+..+..
T Consensus 362 s~~---~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 362 SSL---IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHH---HTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred Hhc---ccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 322 11233333333 34578888888888777788888888888864
No 87
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=91.44 E-value=7.7 Score=38.44 Aligned_cols=200 Identities=13% Similarity=0.121 Sum_probs=114.7
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccc--cCChhHHHHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--FSDQNNFRKALHSVV 419 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~--f~~~~~~~~~~~~l~ 419 (946)
.|+.|++.=.+.+. + . .+ ..+...+.+..+.+|.||...++..-+-. -........+++.++
T Consensus 18 sWkiK~a~ela~~~------e------~---~l-~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI 81 (265)
T 3b2a_A 18 SWQILDAVSLALED------K------R---AL-FLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFI 81 (265)
T ss_dssp TTCHHHHHHHHHHC------H------H---HH-HHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhc------h------h---HH-HHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 79999987443221 0 1 11 23445567889999999999999984410 012256788999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHHHHH
Q 002257 420 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNL 499 (946)
Q Consensus 420 ~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L 499 (946)
..+.+++-.|.+.|..||+++++.-+..+ .-..-++..|..++. ..++.+..-........ .+......+...+
T Consensus 82 ~llk~~dEkval~A~r~L~~LLe~vpL~~---~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l 155 (265)
T 3b2a_A 82 NALSQENEKVTIKALRALGYLVKDVPMGS---KTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL--QPLEDSKLVRTYI 155 (265)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHTTCCBCH---HHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC--CBSCCCHHHHHHH
T ss_pred HHHhccchhHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC--CcccchHHHHHHH
Confidence 99999999999999999999999853111 122334555555554 23333222222222222 3333444554444
Q ss_pred HHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 002257 500 AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMT 579 (946)
Q Consensus 500 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~ 579 (946)
. +++++ +|+ ..-+.+ +..+..+... ..+|++.. .++.=+...++++...+.+-++..+..++
T Consensus 156 ~----sLl~S--kd~------~vK~ag-l~~L~eia~~-S~D~~i~~----~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 156 N----ELVVS--PDL------YTKVAG-FCLFLNMLNS-SADSGHLT----LILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp H----HHHTC--SSH------HHHHHH-HHHHHHHGGG-CSSCCCGG----GTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred H----HHHhC--CCh------hHHHHH-HHHHHHhhcc-cCCHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4 45531 232 222222 2333333322 22333332 33444566677777778888999988887
Q ss_pred hc
Q 002257 580 FF 581 (946)
Q Consensus 580 ~~ 581 (946)
.+
T Consensus 218 s~ 219 (265)
T 3b2a_A 218 SF 219 (265)
T ss_dssp TS
T ss_pred cC
Confidence 43
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=91.03 E-value=0.46 Score=51.14 Aligned_cols=125 Identities=7% Similarity=0.008 Sum_probs=85.5
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
...|+-.--.+..+++. +++++ .+.+.+..-++. | |...|=.|++++|.+... .+...+ ..
T Consensus 82 ~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~----~----N~~iR~lALRtL~~I~~~-----~m~~~l----~~ 142 (355)
T 3tjz_B 82 PTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTG----K----EDSYRGPAVRALCQITDS-----TMLQAI----ER 142 (355)
T ss_dssp HHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHS----S----CHHHHHHHHHHHHHHCCT-----TTHHHH----HH
T ss_pred HHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCC----C----cHhHHHHHHHHHhcCCCH-----HHHHHH----HH
Confidence 34455555555555554 45554 333333333332 2 678999999999998754 222233 44
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
++...+.+.+|++|..|+.++.+.... .|+.....++.+-..+.|.+.-|...|..++..+...
T Consensus 143 ~lk~~L~d~~pyVRk~A~l~~~kL~~~---~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 143 YMKQAIVDKVPSVSSSALVSSLHLLKC---SFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTT---CHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 555567899999999999999887542 4677778888888899998888888888877777654
No 89
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=90.69 E-value=11 Score=45.18 Aligned_cols=104 Identities=8% Similarity=-0.013 Sum_probs=63.5
Q ss_pred HHHhcccCCCCCccchhHHHHHHHHhhhccccCC---hhHHHHHHHHHHhcCCC--CCCchH-HHHHHHHHHHHHhcccc
Q 002257 374 LVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD---QNNFRKALHSVVSGLRD--PELPVR-VDSVFALRSFVEACRDL 447 (946)
Q Consensus 374 l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~---~~~~~~~~~~l~~~L~d--~~~~V~-~~Aa~Al~~~~~~~~~~ 447 (946)
+.+.++..+.+.++-+...++.++..++.+. | .-.++.+++.+...|.. -.-+=| .+|..+|..++.---..
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~--P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~ 417 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELD--PSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMD 417 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcC--CCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 3344444455778888888899998888643 5 45556666666666654 222323 34566666655543233
Q ss_pred cccccchHHHHHHHHHHHhhhhhhhHHHHHHH
Q 002257 448 NEIRPILPQLLDEFFKLMNEVENEDLVFTLET 479 (946)
Q Consensus 448 ~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~ 479 (946)
...++|+.++|..++.-++-.+..--..+++-
T Consensus 418 ~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~f 449 (799)
T 1vsy_4 418 KLYRVHITNVLSMLVSKLDMNDTNLTSNLING 449 (799)
T ss_dssp TTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCcccHHHHHHHHHH
Confidence 45788999999988887765554443333333
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.49 E-value=3.6 Score=46.10 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=99.2
Q ss_pred ccccCHHHHHHHHHHHHHHhcCc----------c-cHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhc
Q 002257 294 EDLYSPRTASMDFVSELVRKRGK----------E-NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ 362 (946)
Q Consensus 294 ~d~~s~R~aa~~ll~~l~~~~~~----------~-~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~ 362 (946)
+..|..|.-|+--|+.+.+.-+. . .+..+.-+....+..|.++. --.-.||+|-.++|++ ..+.+
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDq---VVAPVRETaAQtLGaL-~hLp~ 260 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDR---TVAPVRDAAAYLLSRI-YPLIG 260 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSS---CBCHHHHHHHHHHHHH-TTTSC
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCe---eeeehHHHHHHHHHHH-HhCCh
Confidence 34588899888888888876532 1 11122222233344453322 2457899999999998 66554
Q ss_pred CCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHH
Q 002257 363 TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 442 (946)
Q Consensus 363 ~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~ 442 (946)
. + .-+..++ ..+..+.=-+|-.+..-+..+.+.. . + +..++++++..|+|.+-=||..||.+|..+.
T Consensus 261 e--~-~IL~qLV-----~~l~~~~WEVRHGGLLGLKYL~DLL--~-~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA- 327 (800)
T 3oc3_A 261 P--N-DIIEQLV-----GFLDSGDWQVQFSGLIALGYLKEFV--E-D-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP- 327 (800)
T ss_dssp S--C-CHHHHHT-----TGGGCSCHHHHHHHHHHHHHTGGGC--C-C-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-
T ss_pred h--H-HHHHHHH-----hhcCCCCeeehhhhHHHHHHHHHHH--H-H-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-
Confidence 3 2 1232322 1222222225555555555554332 2 1 8899999999999998889999999988766
Q ss_pred hcccccccccchHHHHHHHHHHHhhhh-----hhhHHHHHHHHHH
Q 002257 443 ACRDLNEIRPILPQLLDEFFKLMNEVE-----NEDLVFTLETIVD 482 (946)
Q Consensus 443 ~~~~~~~l~p~l~~il~~Ll~ll~~~~-----~e~l~~~L~~iv~ 482 (946)
....++.++..|-..+.+.+ .-.+|..|..++.
T Consensus 328 -------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 328 -------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp -------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred -------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 12346677777777776542 1235566666554
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=88.85 E-value=11 Score=35.72 Aligned_cols=162 Identities=16% Similarity=0.267 Sum_probs=107.5
Q ss_pred CCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC-CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHH
Q 002257 341 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVV 419 (946)
Q Consensus 341 ~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~ 419 (946)
+-|..+-.|+..+..++....+ -.++.+. .++-.++ |..--+-......+|+.+.+ .|+....+++.+.
T Consensus 44 DlwtV~kNAl~vi~~i~~~~~e------l~epl~~-kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe~v~~vVp~lf 113 (253)
T 2db0_A 44 DLWTVVKNAISIIMVIAKTRED------LYEPMLK-KLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPELVKSMIPVLF 113 (253)
T ss_dssp SCHHHHHHHHHHHHHHHTTCGG------GHHHHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHhHH------HHHHHHH-HHHHHHhhcccCchHHHHHHHHhHHHHh---CHHHHHhhHHHHH
Confidence 3699999999999998876443 2233222 2222333 44333545556678888874 4689999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCC----cccccHHHH
Q 002257 420 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE----EMAPYALGL 495 (946)
Q Consensus 420 ~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~----~i~p~~~~l 495 (946)
....-.+...|+.-+.||..+.... ++ .++.+...++.++..-+..+-..+|+ ++...++ .+.||.+.+
T Consensus 114 anyrigd~kikIn~~yaLeeIaran--P~----l~~~v~rdi~smltskd~~Dkl~aLn-Fi~alGen~~~yv~PfLprL 186 (253)
T 2db0_A 114 ANYRIGDEKTKINVSYALEEIAKAN--PM----LMASIVRDFMSMLSSKNREDKLTALN-FIEAMGENSFKYVNPFLPRI 186 (253)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHHHC--HH----HHHHHHHHHHHHTSCSSHHHHHHHHH-HHHTCCTTTHHHHGGGHHHH
T ss_pred HHHhcCCccceecHHHHHHHHHHhC--hH----HHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHhccCccccCcchHHH
Confidence 9987667889999999999999874 22 35678888888887555555555554 3445554 356666665
Q ss_pred HHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHH
Q 002257 496 CQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 536 (946)
Q Consensus 496 ~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~ 536 (946)
..-|. | ...+.+.+..+|+..+..
T Consensus 187 ~aLL~------------D-----~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 187 INLLH------------D-----GDEIVRASAVEALVHLAT 210 (253)
T ss_dssp HGGGG------------C-----SSHHHHHHHHHHHHHHHT
T ss_pred HHHHc------------C-----cchhhhHHHHHHHHHHHH
Confidence 44221 2 345777788888877755
No 92
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.20 E-value=2.7 Score=41.84 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=87.2
Q ss_pred cccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHH
Q 002257 295 DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 374 (946)
Q Consensus 295 d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l 374 (946)
+.+++|..|..+|..+ . ....+++++...+... ++|+.+|.+-.+++-++....-. .....+..|
T Consensus 83 ~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D-------~~WrVre~lA~a~~~~~~~~~pe-~~l~~~~~W- 147 (240)
T 3l9t_A 83 DVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKD-------NNWRVQEVLAKAFDEFCKKIEYK-KALPIIDEW- 147 (240)
T ss_dssp SSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGC-------SCHHHHHHHHHHHHHHHHHHCTT-TTHHHHHHH-
T ss_pred cchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCC-------CCccHHHHHHHHHHHHHHhcCHH-HHHHHHHHH-
Confidence 3478999999977665 2 2256777777655431 48999999988888776421111 112233333
Q ss_pred HHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 375 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 375 ~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
..++++.+|+.|+...--|+... ........+++.+-.+..|++.-||-+-+.+|+.+...
T Consensus 148 -------~~d~n~~VRR~Ase~~rpW~~~~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 148 -------LKSSNLHTRRAATEGLRIWTNRP-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -------HHCSSHHHHHHHHHHTCSGGGST-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -------hcCCCHHHHHHHHHhhHHHhccc-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 35799999999998876676531 12245667888888888899999999999999987765
No 93
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.21 E-value=56 Score=39.62 Aligned_cols=116 Identities=13% Similarity=0.158 Sum_probs=70.2
Q ss_pred CchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCC--CC--CccchhHHHHHHHHhhhccccCChhHHHHHHHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEF--SS--PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHS 417 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l--~~--~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~ 417 (946)
+-..|-||++++|.+..+..+ ..-..|.+++...= .. +++.+|..||.-+|...--. .++ .+++.
T Consensus 408 ~~~ik~GAllaLGli~ag~~~------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS-~~e----ev~e~ 476 (963)
T 4ady_A 408 SRFIKGGSLYGLGLIYAGFGR------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS-ANI----EVYEA 476 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTTTH------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC-CCH----HHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC-CCH----HHHHH
Confidence 567899999999999887543 12233444432110 01 15889999999999853111 123 45666
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHH
Q 002257 418 VVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFT 476 (946)
Q Consensus 418 l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~ 476 (946)
+...|.+.+..++..|+.||..+.-.... ..+++.|+..+.+.+.+.+.+.
T Consensus 477 L~~~L~dd~~~~~~~AalALGli~vGTgn--------~~ai~~LL~~~~e~~~e~vrR~ 527 (963)
T 4ady_A 477 LKEVLYNDSATSGEAAALGMGLCMLGTGK--------PEAIHDMFTYSQETQHGNITRG 527 (963)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCCC--------HHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcccCC--------HHHHHHHHHHHhccCcHHHHHH
Confidence 66666665567888999999876543211 2355556665555555555443
No 94
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=83.90 E-value=5.3 Score=43.03 Aligned_cols=139 Identities=11% Similarity=0.081 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhc-C--cccH--HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHH-HH
Q 002257 299 PRTASMDFVSELVRKR-G--KENL--QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL-ER 372 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~-~--~~~l--~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l-~~ 372 (946)
.+..|...|..|+... + ..+. .-.++.+...+.... +..++..++.|..++..++..+......+..+ +.
T Consensus 187 ~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~----~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 262 (354)
T 3nmw_A 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS----QTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC----SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC----CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc
Confidence 3455666677776522 1 1111 123444556664321 11134567778788887775321110010000 00
Q ss_pred HHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHH-----HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 373 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 373 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
-....++..+.++..-+|..|+|+++.++.- +++... -+++.+++.|.+.+..++..|+.||.+++...
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCC---CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 0122333445677778999999999999731 333332 34788999998888899999999999999874
No 95
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=83.87 E-value=76 Score=37.51 Aligned_cols=252 Identities=15% Similarity=0.115 Sum_probs=130.5
Q ss_pred CCCCccchhHHHHHHHHhhhccc-cCChhHH-HHHHHHHHhcCCCCCC---chHHHHHHHHHHHHHhcccccccccc-hH
Q 002257 382 FSSPVGHLRAKAAWVAGQYAHIN-FSDQNNF-RKALHSVVSGLRDPEL---PVRVDSVFALRSFVEACRDLNEIRPI-LP 455 (946)
Q Consensus 382 l~~~~~~lr~ra~~~l~~~~~~~-f~~~~~~-~~~~~~l~~~L~d~~~---~V~~~Aa~Al~~~~~~~~~~~~l~p~-l~ 455 (946)
+.++.+-+|..|+|.++.++.-. .+. ... .-.++.+++.|.+... .+|..|+.||.+++-..++...+..+ ..
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d~~~R~-~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRSKNFIP-QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTSGGGHH-HHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 45678899999999999997521 010 111 2357888888876533 38999999999998654322223211 12
Q ss_pred HHHHHHHHHHhh-hhhh-------------hHHHHHHHHHHhh--C----CcccccHHHHHH--HHHHHHHHHHhhccCC
Q 002257 456 QLLDEFFKLMNE-VENE-------------DLVFTLETIVDKF--G----EEMAPYALGLCQ--NLAAAFWRCMNTAEAD 513 (946)
Q Consensus 456 ~il~~Ll~ll~~-~~~e-------------~l~~~L~~iv~~~--~----~~i~p~~~~l~~--~L~~~~~~~~~~~~~d 513 (946)
..+..|+.++.. .+.+ ....++.++..-. . +++. ..++. .....+..++. +
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r---~~Ii~~~ga~~~L~~LL~----s 617 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC---KHIVSTKVYWSTIENLML----D 617 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH---HHHHHSHHHHHHHHHGGG----C
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH---HHHHHhcCHHHHHHHHHh----C
Confidence 677778888762 1211 1334555542222 1 1221 12222 12233334443 1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhcCChhHH-HHHH----hh---HHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCC
Q 002257 514 EDADDPGALAAVGCLRAISTILESVSRLPHLF-VQIE----PT---LLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTI 585 (946)
Q Consensus 514 ~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~-~~l~----~~---l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i 585 (946)
++.+..-...++++.+... |+.. ..+. +. -++++...++.+..+....+.-.+..++...+.+
T Consensus 618 -----~n~~VrrAA~elI~NL~~~----~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i 688 (778)
T 3opb_A 618 -----ENVPLQRSTLELISNMMSH----PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688 (778)
T ss_dssp -----SSHHHHHHHHHHHHHHHTS----GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred -----CCHHHHHHHHHHHHHHhCC----cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH
Confidence 2234444566777777653 2211 1221 11 2667777777766666666666666654322222
Q ss_pred CHHH---HHHHHHHHHHHhh--hHhhhHhhhHHHHHHHHhcCcccccccCCCchH--HHHHHHHHHHHcCCC
Q 002257 586 SLEM---WSLWPLMMEALAD--WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQ--QSLWSMVSSIMADKN 650 (946)
Q Consensus 586 ~p~l---~~l~~~l~~~~~~--~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~--~~i~~i~~~ll~~~~ 650 (946)
...+ ...++.++..+.. .+.+.....+.++.|.+.+.++..-...-..+. ....+.+.+.+.+.+
T Consensus 689 a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 689 AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 1111 2345555666554 345666677788888887543321100000111 334456666776553
No 96
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.49 E-value=7.8 Score=46.90 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=56.6
Q ss_pred CCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHH
Q 002257 383 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 462 (946)
Q Consensus 383 ~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll 462 (946)
.+.+|.+|+.|++.+|..+--. + ...++..+...+.|++.-||..|+.||..+.-. ..+...|.+..++..|.
T Consensus 622 ~~~d~~VR~gAalALGli~aGn--~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g--tnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGK--G---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ--QTEKLNPQVADINKNFL 694 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSS--C---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT--CCTTTCTTHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCC--C---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC--CccccchHHHHHHHHHH
Confidence 3567889999999998886422 2 245566666667788888999999999887765 34566678888888877
Q ss_pred HHHhh
Q 002257 463 KLMNE 467 (946)
Q Consensus 463 ~ll~~ 467 (946)
+...+
T Consensus 695 ~~~~d 699 (963)
T 4ady_A 695 SVITN 699 (963)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 77654
No 97
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=82.13 E-value=11 Score=43.34 Aligned_cols=197 Identities=11% Similarity=0.166 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh--hhhhhHHHHHHHHHHhhC
Q 002257 409 NNFRKALHSVVSGLRDPELP-VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--VENEDLVFTLETIVDKFG 485 (946)
Q Consensus 409 ~~~~~~~~~l~~~L~d~~~~-V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~--~~~e~l~~~L~~iv~~~~ 485 (946)
+.....++.++..+++..+. =|-.|+.+|+.|.... +..+. ..-|..|+..+++ .+.|.+..+|+++...+.
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y--~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~ 91 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY--RLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIIS 91 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT--TTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh--HHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 45556666666666543333 5777888888776543 23222 2234445555544 244556667777755443
Q ss_pred Ccccc------------cHHHHHHHH------HHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 002257 486 EEMAP------------YALGLCQNL------AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ 547 (946)
Q Consensus 486 ~~i~p------------~~~~l~~~L------~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~ 547 (946)
..-.+ .+...+..+ +..+..++++ +....+.+.++.+..++.. .|+-++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~---------~df~vR~~alqlL~~L~~~---r~~~~Q~ 159 (651)
T 3grl_A 92 NDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE---------FDFHVRWPGVKLLTSLLKQ---LGPQVQQ 159 (651)
T ss_dssp CC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHH---SHHHHHH
T ss_pred CCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC---------ccHHHHHHHHHHHHHHHhc---CcHHHHH
Confidence 21110 111111111 1122233321 1123445566667677765 3321111
Q ss_pred -H--HhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHHhhhH----hhhHhhhHHHHHHH
Q 002257 548 -I--EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM--WSLWPLMMEALADWA----IDFFPNILVPLDNY 618 (946)
Q Consensus 548 -l--~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~~~i~p~l--~~l~~~l~~~~~~~~----~~~l~~~~~~L~~~ 618 (946)
+ .+.-+|.+..+|+.+...+..+++.++..++...+.+-..+ ...|+.+++.+...+ ...+++++.+|.|.
T Consensus 160 ~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nL 239 (651)
T 3grl_A 160 IILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239 (651)
T ss_dssp HHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 1 23567888888887777788999999999997654333222 256888888876432 34567777777776
Q ss_pred HhcC
Q 002257 619 ISRG 622 (946)
Q Consensus 619 i~~~ 622 (946)
+++.
T Consensus 240 Lr~N 243 (651)
T 3grl_A 240 LKNN 243 (651)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 5544
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=82.07 E-value=5.8 Score=40.96 Aligned_cols=150 Identities=7% Similarity=0.095 Sum_probs=81.7
Q ss_pred HHhcCCCCCCchHHHHHHHHHHHHHhcccc----cccccchHHHHHHHHH-HHhhhhhhhHHHHHHHHHHhhCCcccccH
Q 002257 418 VVSGLRDPELPVRVDSVFALRSFVEACRDL----NEIRPILPQLLDEFFK-LMNEVENEDLVFTLETIVDKFGEEMAPYA 492 (946)
Q Consensus 418 l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~----~~l~p~l~~il~~Ll~-ll~~~~~e~l~~~L~~iv~~~~~~i~p~~ 492 (946)
+-..+.|.+..|...|+.++..++...... ....+++..++..|+. .+.....-....+++.+...+... .+ .
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~-~ 137 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TS-I 137 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SS-S
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-Cc-H
Confidence 345667888999999999999998864311 2233444555555543 122221112222333332222111 11 1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHH
Q 002257 493 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVL 572 (946)
Q Consensus 493 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l 572 (946)
..+.+.+. ..++ . .++....+++..+..++...+...-........+++.+..++.....+..+.+.
T Consensus 138 ~~~~e~l~----~~l~--~-------Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~ 204 (278)
T 4ffb_C 138 TQSVELVI----PFFE--K-------KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTM 204 (278)
T ss_dssp HHHHHHHG----GGGG--C-------SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHH----HHHh--c-------cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 12222222 1121 1 234566788999999998764321112223345666777778777788999999
Q ss_pred HHHHHHHhcC
Q 002257 573 EIVSYMTFFS 582 (946)
Q Consensus 573 ~ll~~l~~~~ 582 (946)
.++..+-...
T Consensus 205 ~l~~~ly~~~ 214 (278)
T 4ffb_C 205 NLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHh
Confidence 9998886543
No 99
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=81.38 E-value=76 Score=37.94 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHhh---hhhhhHHHHHHHHH
Q 002257 411 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIV 481 (946)
Q Consensus 411 ~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~-~~~~l~p~l~~il~~Ll~ll~~---~~~e~l~~~L~~iv 481 (946)
...+++.+...+.+.+..|..+++.|++.++.... .++.+ +|.+++.+...+.. .+.-.+..+|+++.
T Consensus 337 V~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV---lP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 337 VEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI---YDKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH---HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee---hHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 34455666667778889999999999999998631 11444 55688888888765 33334555555543
No 100
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=77.37 E-value=11 Score=42.19 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHhc-C--cccH--HHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHH-H
Q 002257 298 SPRTASMDFVSELVRKR-G--KENL--QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL-E 371 (946)
Q Consensus 298 s~R~aa~~ll~~l~~~~-~--~~~l--~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l-~ 371 (946)
..+..|...|..|+.+. . ..+. .-.++.+.+.+.... +..++..++.|..++..++..+.........+ +
T Consensus 302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~----~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~ 377 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS----QTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCC----SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCC----CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 45666777788887632 1 1111 123444556664321 11133567777778877775321111111011 0
Q ss_pred HHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHH-----HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 372 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 372 ~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
.-....++..+.+...-++..|+|+++.++.- +++... -+++.+++.|.+.+..++..|+.||.+++...
T Consensus 378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~---~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS---CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cccHHHHHHHHcCCChHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 00122344456677778999999999999741 232322 34788899998888889999999999999874
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=77.13 E-value=22 Score=36.24 Aligned_cols=173 Identities=12% Similarity=0.181 Sum_probs=102.8
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHH---HHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCC-cchHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQK---FIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PYKSELER 372 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~---ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~-~~~~~l~~ 372 (946)
+.-|.+|.+.|.......++.++.. ++..+.-.+-. .|...--.++-++..+...+.+.. .+...-..
T Consensus 60 ~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d--------~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 60 FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFE--------TNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTS--------CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3446666666666555444433322 34444322222 155556677777777766665422 12211113
Q ss_pred HHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhccccccccc
Q 002257 373 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 452 (946)
Q Consensus 373 ~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p 452 (946)
.+..+++--+.++..-+|..+-.++-.+..+. + ...+++.+++.+.+.+..+|..++..+..+++..... |
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~--~---~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~ 202 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV--G---PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----P 202 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH--C---HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----G
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC--C---HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----c
Confidence 34455555566777778999888887776532 3 2346777888888889999999999999999986432 2
Q ss_pred chHHHH---HHHHHHHhhhhhhhHHHHHHHHHHhh---CCcc
Q 002257 453 ILPQLL---DEFFKLMNEVENEDLVFTLETIVDKF---GEEM 488 (946)
Q Consensus 453 ~l~~il---~~Ll~ll~~~~~e~l~~~L~~iv~~~---~~~i 488 (946)
...+ ..+.+++++.+...--.++.++++.| |+.+
T Consensus 203 --~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 203 --LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp --GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred --cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 1134 56667777665555445555555444 5544
No 102
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=75.13 E-value=46 Score=33.03 Aligned_cols=146 Identities=12% Similarity=0.190 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccc-cchHHHHHHHHHHHhhhhhhhH---HHHHHHHHHhhCCc
Q 002257 412 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR-PILPQLLDEFFKLMNEVENEDL---VFTLETIVDKFGEE 487 (946)
Q Consensus 412 ~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~-p~l~~il~~Ll~ll~~~~~e~l---~~~L~~iv~~~~~~ 487 (946)
...+..+.+.|.+.|..|+..|..+|+.++... ...++ ..+..++..+..++.+-+.-.. ++||..+++.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~--~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~---- 105 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRA--DSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD---- 105 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT----
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC----
Confidence 357888889999999999999999999999873 22222 4466677777777644332222 3445555432
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhH
Q 002257 488 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 567 (946)
Q Consensus 488 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~ 567 (946)
.|..+.-...+..++..+.++ .+.+...+..+.++.+ +-.... ..+...+...+.+...+.
T Consensus 106 -vpL~~~~y~Kl~~aL~dlik~---------~~~il~~eaae~Lgkl-kv~~~~--------~~V~~~l~sLl~Skd~~v 166 (265)
T 3b2a_A 106 -VPMGSKTFLKAAKTLVSLLES---------PDDMMRIETIDVLSKL-QPLEDS--------KLVRTYINELVVSPDLYT 166 (265)
T ss_dssp -CCBCHHHHHHHHHHHHHHTTS---------CCHHHHHHHHHHHHHC-CBSCCC--------HHHHHHHHHHHTCSSHHH
T ss_pred -CCCCHHHHHHHHHHHHHHhcC---------CCchHHHHHHHHhCcC-Ccccch--------HHHHHHHHHHHhCCChhH
Confidence 234444445566666666552 1123333444444443 111111 233444444444444445
Q ss_pred HHHHHHHHHHHHhcC
Q 002257 568 FEEVLEIVSYMTFFS 582 (946)
Q Consensus 568 ~~~~l~ll~~l~~~~ 582 (946)
-.-|+.++..+.-++
T Consensus 167 K~agl~~L~eia~~S 181 (265)
T 3b2a_A 167 KVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhhccc
Confidence 555666666665443
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=74.24 E-value=9.2 Score=45.35 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=45.8
Q ss_pred CCCCccchhHHHHHHHHhhhccccCChh-----HHHHHHHH-HHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 382 FSSPVGHLRAKAAWVAGQYAHINFSDQN-----NFRKALHS-VVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 382 l~~~~~~lr~ra~~~l~~~~~~~f~~~~-----~~~~~~~~-l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
|+++.+-.|..||+.++.++. ++. ....++.. +..+|.|++..||..|+.||++++...
T Consensus 43 L~S~~~~~r~~A~~al~~l~~----~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQ----DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTT----SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHc----CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 568899999999999999975 232 22234544 456688999999999999999998763
No 104
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=72.55 E-value=31 Score=39.75 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=9.1
Q ss_pred hchHHHHHHHHHHHHh
Q 002257 676 HWVEPYLRITVERLRR 691 (946)
Q Consensus 676 ~~l~~il~~~~~~L~~ 691 (946)
.|+..++..+++.+..
T Consensus 171 ~yl~~vl~mLV~~F~~ 186 (649)
T 3tj1_A 171 KWWQDVSMILVSCFIL 186 (649)
T ss_dssp GGHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhccC
Confidence 4566666666655543
No 105
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=72.23 E-value=34 Score=38.50 Aligned_cols=189 Identities=14% Similarity=0.206 Sum_probs=97.7
Q ss_pred CchhHhHHHHHHHHHHhhhhc---C-CcchHHHH-HHHHHhcccCCC---C--CccchhHHHHHHHHhhhccccCChhHH
Q 002257 342 PYRQKDGALLAIGALCDKLKQ---T-EPYKSELE-RMLVQHVFPEFS---S--PVGHLRAKAAWVAGQYAHINFSDQNNF 411 (946)
Q Consensus 342 ~~~~keaal~alg~ia~~l~~---~-~~~~~~l~-~~l~~~v~p~l~---~--~~~~lr~ra~~~l~~~~~~~f~~~~~~ 411 (946)
.|-.|.||-.++..+...-.. . .....++. ..+.-..+--|. + .-.-+|-.|+.++|.. ... +++
T Consensus 187 ~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hL--p~e-- 261 (800)
T 3oc3_A 187 EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPL--IGP-- 261 (800)
T ss_dssp SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTT--SCS--
T ss_pred chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhC--Chh--
Confidence 899999999998877654311 0 00000111 112111111122 2 2345888888888887 422 333
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCccccc
Q 002257 412 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPY 491 (946)
Q Consensus 412 ~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~ 491 (946)
.+++..++..+..+.=-||-.+..+|+.+ . +.+.. ++.++..++..+++.+.|...-+-++++-.. .|
T Consensus 262 ~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~-----DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA----~p- 329 (800)
T 3oc3_A 262 NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K-----EFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP----IT- 329 (800)
T ss_dssp CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G-----GGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC----CS-
T ss_pred HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H-----HHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc----ch-
Confidence 24444444444455566888899999987 1 22222 7888888888887765544444444443322 22
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHHHHHHHHHHHhhc---CChhHHHHHHhhHHHHHHHhc
Q 002257 492 ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS---RLPHLFVQIEPTLLPIMRRML 560 (946)
Q Consensus 492 ~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ti~~ll~~~~---~~~~~~~~l~~~l~p~i~~~l 560 (946)
+-+..+...+|..+.+. | +-+....++++.++.++..-. ..| .+.+.++|.+.+.+
T Consensus 330 --~~l~~LL~iLWd~L~~L--D-----DLSASTgSVMdLLAkL~s~p~~a~~dp----~LVPRL~PFLRHtI 388 (800)
T 3oc3_A 330 --DSLDLVLEKCWKNIESE--E-----LISVSKTSNLSLLTKIYRENPELSIPP----ERLKDIFPCFTSPV 388 (800)
T ss_dssp --STHHHHHHHHHHHHHTC--C-----SCCTTHHHHHHHHHHHHHHCTTCCCCS----GGGGGTGGGGTCSS
T ss_pred --hhHHHHHHHHHHHhhhh--c-----ccchhhHHHHHHHHHHHcCCcccccCh----HHHHHHHhhhcCCc
Confidence 22344555555555422 1 111222345555556555421 122 45566666655543
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=71.95 E-value=9.4 Score=39.00 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCCccchhHHHHHHHH
Q 002257 319 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 398 (946)
Q Consensus 319 l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~ 398 (946)
...+++++...+... .-+.|+++-.++-.+..... . +.+..++...+++.+...|.-++..++
T Consensus 130 a~~~lP~LveKlGd~--------k~~vR~~~r~il~~l~~v~~------~---~~v~~~l~~g~ksKN~R~R~e~l~~l~ 192 (266)
T 2of3_A 130 VSAFVPYLLLKTGEA--------KDNMRTSVRDIVNVLSDVVG------P---LKMTPMLLDALKSKNARQRSECLLVIE 192 (266)
T ss_dssp HHHHHHHHHHGGGCS--------SHHHHHHHHHHHHHHHHHHC------H---HHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------hHHHHHHHHHHHHHHHHHCC------H---HHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 456777777766432 34678888877766654321 1 112344555678889999999998888
Q ss_pred hhhccccCChhHHHHHH---HHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 399 QYAHINFSDQNNFRKAL---HSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 399 ~~~~~~f~~~~~~~~~~---~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
..-+- +-.+ ....+ +.+.+++.|++.-||-.|..|+..+....
T Consensus 193 ~li~~-~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 193 YYITN-AGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHHH-HCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-cCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 87431 1111 12355 99999999999999999999999888763
No 107
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=68.68 E-value=26 Score=33.80 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=78.7
Q ss_pred HhhHHHHHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhccCchhhhhchhhHHHHHHHHHhcccccChhhHhhhhcChH
Q 002257 204 KNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPH 283 (946)
Q Consensus 204 ~~~~~~~l~~~~~~l~~~~~~~~~~d~~~~~~l~fl~~~~~~~~~~~~l~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~ 283 (946)
.+.+|-|++.+-+-+...- .+-..+...++...+.+.++.. .+.|++-.++..++ -.+ ++.+
T Consensus 39 ~~LlPyf~~fI~~~v~~nl----~~l~~L~~lm~~~~ALl~N~~l--~lepYlH~LipsvL-tCl-l~k~---------- 100 (196)
T 4atg_A 39 QQLVPYFIQHISELILKSF----KEAEVLKTCIALYFSLIKNKHV--FIDPYLHQILPSLL-TCV-IGKS---------- 100 (196)
T ss_dssp TTTHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHCTTC--CCGGGHHHHHHHHH-HHH-HCTT----------
T ss_pred hhhHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHH-HHH-Hhcc----------
Confidence 4566767766665554321 1346788889999998888764 46777666666544 221 1111
Q ss_pred HHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhh
Q 002257 284 EYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL 360 (946)
Q Consensus 284 efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l 360 (946)
... . ..|.-|++++..++.+++... +.+-+-+...+.+...+|. ......+||+..++.++...
T Consensus 101 ------l~~--~--~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~--~~l~t~YGAi~GL~~lG~~~ 164 (196)
T 4atg_A 101 ------IVD--D--DVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPN--RSEDSQYGALYCLSILSKNV 164 (196)
T ss_dssp ------CCC--H--HHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTT--SCHHHHHHHHHHHHHHCHHH
T ss_pred ------cCH--H--HHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHHhHHHH
Confidence 110 0 689999999999999986521 2334444444443333343 36788999999999888753
No 108
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=60.49 E-value=67 Score=39.53 Aligned_cols=126 Identities=18% Similarity=0.217 Sum_probs=74.7
Q ss_pred HHHHHHHHhcccCCC-CCccchhHHHHHHHHhh--hccccCChhHHHHHHHHHHhcCCCCC-CchHHHHHHHHHHHHHhc
Q 002257 369 ELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQY--AHINFSDQNNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~-~~~~~lr~ra~~~l~~~--~~~~f~~~~~~~~~~~~l~~~L~d~~-~~V~~~Aa~Al~~~~~~~ 444 (946)
.++.++ ..+....+ +++- .|.+++-++..| ....+-..+....++..++++|.|+. +-||..|+.+|..++...
T Consensus 798 ~~~~~l-~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 798 HVAAIV-DYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHH-HHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 444444 44554454 3445 888888886655 22222233455789999999999999 889999999999998763
Q ss_pred ccccccccchHHHHHHHHHHHhh---------------hhhhhHHHHHHHHHHhhCCcc--cccHHHHHHHHH
Q 002257 445 RDLNEIRPILPQLLDEFFKLMNE---------------VENEDLVFTLETIVDKFGEEM--APYALGLCQNLA 500 (946)
Q Consensus 445 ~~~~~l~p~l~~il~~Ll~ll~~---------------~~~e~l~~~L~~iv~~~~~~i--~p~~~~l~~~L~ 500 (946)
....... .++..+.....+ ..--.-+..|.++|..+.=.+ -|+.++++..|+
T Consensus 876 ~~~~~~~----~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 876 KEEQPLL----SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp CSHHHHH----HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHH
T ss_pred CchhhHH----HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Confidence 0101111 233322222211 011112355777888877665 457777776554
No 109
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=59.39 E-value=1e+02 Score=29.58 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhcC-cccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhh-cCCcchHHHHHHHHH
Q 002257 299 PRTASMDFVSELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK-QTEPYKSELERMLVQ 376 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~~-~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~-~~~~~~~~l~~~l~~ 376 (946)
.|.+|.. +|...-| .+.+|.+..|+.+-+.... .|+......+.++.++...-. ...+|.-++-+-+.+
T Consensus 24 ~r~~aL~---sL~~D~gL~~LlPyf~~fI~~~v~~nl------~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLt 94 (196)
T 4atg_A 24 MKDIAIE---CLEKESGLQQLVPYFIQHISELILKSF------KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLT 94 (196)
T ss_dssp THHHHHH---HHHHCSSCTTTHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHH
T ss_pred HHHHHHH---HHhcCCChhhhHHHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 4554443 4444333 4677777777776665421 255555555555555544311 112333222221222
Q ss_pred hccc-CCCCCccchhHHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHhcccccccc
Q 002257 377 HVFP-EFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPE--LPVRVDSVFALRSFVEACRDLNEIR 451 (946)
Q Consensus 377 ~v~p-~l~~~~~~lr~ra~~~l~~~~~~~f~~--~~~~~~~~~~l~~~L~d~~--~~V~~~Aa~Al~~~~~~~~~~~~l~ 451 (946)
-++. .+. +. -+|.-|..+++..+. .|.+ +.....+...+.+.+.|+. +..+..|..+|..+=... ....+-
T Consensus 95 Cll~k~l~-~~-~LRd~AA~lL~~I~~-~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~-vr~~ll 170 (196)
T 4atg_A 95 CVIGKSIV-DD-DVRKMSADIVKYIYD-TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNV-VNTVIR 170 (196)
T ss_dssp HHHCTTCC-CH-HHHHHHHHHHHHHHH-HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHH-HHTHHH
T ss_pred HHHhcccC-HH-HHHHHHHHHHHHHHH-HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHH-HHHhhh
Confidence 2211 111 22 799999999999875 3433 4677889999999988764 457788888888764432 333444
Q ss_pred cchHHHHH
Q 002257 452 PILPQLLD 459 (946)
Q Consensus 452 p~l~~il~ 459 (946)
|+++.+..
T Consensus 171 P~l~~~~~ 178 (196)
T 4atg_A 171 EHAEEYKR 178 (196)
T ss_dssp HHHHHHHH
T ss_pred cCHHHHHH
Confidence 65555543
No 110
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=57.38 E-value=1.9e+02 Score=30.19 Aligned_cols=121 Identities=14% Similarity=0.157 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHHHh----hhhhhhHHHHHHHHHHhhCCcccccHHHHHHHHHHHHHHHHhhccCCCCCCChhhHHHHHH
Q 002257 452 PILPQLLDEFFKLMN----EVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGC 527 (946)
Q Consensus 452 p~l~~il~~Ll~ll~----~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 527 (946)
.++|++++..+.=-+ ..-...+..++.+++.++++.+.|+.+.+...+...-...++. |- ++.+-.+...
T Consensus 69 ~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~---df---~eyPehR~~F 142 (321)
T 1w9c_A 69 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK---DF---EEYPEHRTNF 142 (321)
T ss_dssp HTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSS---TT---TCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc---cc---ccChHHHHHH
Confidence 345555554433222 2333557889999999999999999999999988877777752 32 2445566677
Q ss_pred HHHHHHHHHhhcC-----ChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHHHhcC
Q 002257 528 LRAISTILESVSR-----LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 582 (946)
Q Consensus 528 l~ti~~ll~~~~~-----~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l~~~~ 582 (946)
+..+..+...+=. .|+.+ ..++.-+.-.++....+..+-++.++..++.+.
T Consensus 143 f~LL~ai~~~cF~al~~lp~~~f----klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 143 FLLLQAVNSHCFPAFLAIPPTQF----KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHHHHHHHCTTHHHHSCHHHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHH----HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 7777777765311 12111 223444445566666678888888888777553
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=52.46 E-value=24 Score=35.17 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=55.1
Q ss_pred cCCCCCcc--chhHHHHHHHHhhhccccCChhHHH-----HHHHHHHhcCCCCCCchHHHHHHHHHHHHHh-cccccccc
Q 002257 380 PEFSSPVG--HLRAKAAWVAGQYAHINFSDQNNFR-----KALHSVVSGLRDPELPVRVDSVFALRSFVEA-CRDLNEIR 451 (946)
Q Consensus 380 p~l~~~~~--~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~-~~~~~~l~ 451 (946)
..|+++.+ -++..|++.+...+.- +++... -.++.+++.|.+++..|+..|+.||.++... .+.+..+.
T Consensus 15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~---~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~ 91 (233)
T 3tt9_A 15 SMLEADHMLPSRISAAATFIQHECFQ---KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVA 91 (233)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHcC---CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35666666 7888899998877631 222222 3578999999988889999999999999864 22333333
Q ss_pred cchHHHHHHHHHHHhh
Q 002257 452 PILPQLLDEFFKLMNE 467 (946)
Q Consensus 452 p~l~~il~~Ll~ll~~ 467 (946)
.. ..+..|.+++..
T Consensus 92 ~~--GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 92 EL--NGVPRLLQVLKQ 105 (233)
T ss_dssp HT--THHHHHHHHHHH
T ss_pred Hc--CCHHHHHHHHcc
Confidence 21 345555555543
No 112
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=52.40 E-value=2.5e+02 Score=30.23 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCC-ccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCC
Q 002257 348 GALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP-VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPE 426 (946)
Q Consensus 348 aal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~-~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~ 426 (946)
-.|-.+|++..|..- |++..-..|+.+.++|.-+.+ ...-...-..|+.+|.+ + ++.....++.+++++=--.+
T Consensus 190 eLLeilgsIinGfa~--PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~e-K--Dp~L~~~vi~~LLk~WP~tn 264 (403)
T 3fga_B 190 ELLEILGSIINGFAL--PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE-K--DSTLTEPVVMALLKYWPKTH 264 (403)
T ss_dssp HHHHHHHHHHHHCCS--SCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHH-H--CGGGHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcccCC--CchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-h--CchhHHHHHHHHHHhCCCCC
Confidence 477788888888542 344456688999999987643 33444455667777754 2 67788889999998875444
Q ss_pred CchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhh
Q 002257 427 LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 468 (946)
Q Consensus 427 ~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~ 468 (946)
..-.+.=..=+..+++.. .++.+.+...+++..+...+...
T Consensus 265 s~KevlFL~Ele~iLe~~-~~~~f~~i~~~lf~~la~ci~S~ 305 (403)
T 3fga_B 265 SPKEVMFLNELEEILDVI-EPSEFVKIMEPLFRQLAKCVSSP 305 (403)
T ss_dssp HHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHCCC
Confidence 444444555566666654 45667777777777777777653
No 113
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=51.47 E-value=22 Score=35.44 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=48.4
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHH-----HHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhc
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFR-----KALHSVVSGLR-DPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~-----~~~~~l~~~L~-d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
.++..|.++++-+|..|+|.+..++.- +++... -.++.+++.|. ..+..++..|+.||.++....
T Consensus 56 ~LV~lL~s~~~~vq~~Aa~aL~nLa~~---~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 56 KLLQLLKVQNEDVQRAVCGALRNLVFE---DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 344456788899999999999998741 333322 25788888887 467789999999999987653
No 114
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=48.58 E-value=30 Score=34.48 Aligned_cols=127 Identities=9% Similarity=0.111 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHH-HHHHHHHHhhhhcCCc-chHHHHHHHHH
Q 002257 299 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGA-LLAIGALCDKLKQTEP-YKSELERMLVQ 376 (946)
Q Consensus 299 ~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaa-l~alg~ia~~l~~~~~-~~~~l~~~l~~ 376 (946)
.|-+|..++....+......++ .+...+.. ..||..-|.. -.++|.+... ... ....+..
T Consensus 77 ~r~~ai~~l~~~~k~~~~~~l~----~~~~~l~~-------~~nWd~~D~~a~~~~g~~~~~---~p~~~~~~l~~---- 138 (232)
T 3jxy_A 77 FQAAALDIMQKYKKHINETHIP----FLEELIVT-------KSWWDSVDSIVPTFLGDIFLK---HPELISAYIPK---- 138 (232)
T ss_dssp HHHHHHHHHHHTGGGCCGGGHH----HHHHHHTS-------SCCHHHHHHHTTTHHHHHHHH---CGGGGGGTHHH----
T ss_pred HHHHHHHHHHHHHHhCCHHHHH----HHHHHHcc-------CCChHHHHHhhHHHHHHHHHH---CHHHHHHHHHH----
Confidence 6888888776544333333333 33344432 1389999976 3455544332 111 1112223
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
-..|+++++|+.|+.+.-. +........++..+..++.|++.-|+...+.+|+.+... .++.+.+|+
T Consensus 139 ----W~~s~~~w~rR~ai~~~l~-----~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~--~p~~v~~fl 205 (232)
T 3jxy_A 139 ----WIASDNIWLQRAAILFQLK-----YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT--NPDVVWEYV 205 (232)
T ss_dssp ----HHHSSCHHHHHHHHHTTTT-----CGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT--CHHHHHHHH
T ss_pred ----HhcCCchHHHHHHHHHHHH-----HHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh--CHHHHHHHH
Confidence 3357899999988765522 222234456667777788899999999999999987765 345555554
No 115
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=46.61 E-value=20 Score=35.47 Aligned_cols=130 Identities=9% Similarity=0.040 Sum_probs=78.6
Q ss_pred cCHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 002257 297 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 376 (946)
Q Consensus 297 ~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~ 376 (946)
+--|-+|..++....+.. .+..+.++...+.. ..||..-|..-.++|.+... ... .+. .
T Consensus 69 ~E~r~la~~~l~~~~~~~----~~~~l~~~~~~l~~-------~~nWd~~D~~a~~~~~~~~~---~~~---~~~----~ 127 (220)
T 2b6c_A 69 REYQYVAIDLALQNVQRF----SLEEVVAFKAYVPQ-------KAWWDSVDAWRKFFGSWVAL---HLT---ELP----T 127 (220)
T ss_dssp HHHHHHHHHHHHHTGGGC----CHHHHHHGGGGTTT-------TCSHHHHHHHHHHHHHHHHH---SGG---GHH----H
T ss_pred hHHHHHHHHHHHHHHhhC----CHHHHHHHHHHhcc-------CCcHHHHHHHHHHHHHHHHH---ChH---HHH----H
Confidence 335777887776543221 22334433344432 13999999865545544322 211 121 2
Q ss_pred hcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 377 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 377 ~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
.+..-..|++.++|+.|+... ..+........+++.+-.++.|++.-|+...+.+|+.+... .++.+.+|+
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~-----l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~--~~~~v~~fl 198 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQ-----LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT--NPQWVEELM 198 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTT-----TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT--CHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh--CHHHHHHHH
Confidence 233446789999999998755 22333345566777777788999999999999999987765 344454544
No 116
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=43.89 E-value=95 Score=32.53 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhc--ccc--CCh-hHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH--INF--SDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 443 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~--~~f--~~~-~~~~~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~ 443 (946)
+.+.|+..+- ..+.+++-+.|+.++.++|.+-- ..+ ... -.-..-+..++++|.|++.-+|..|-+-++-|+.+
T Consensus 206 nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 206 HYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp THHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 4455565544 46788999999999999999832 110 000 01234578889999999999999999999999998
Q ss_pred ccccc
Q 002257 444 CRDLN 448 (946)
Q Consensus 444 ~~~~~ 448 (946)
+.-+.
T Consensus 285 P~K~~ 289 (341)
T 1upk_A 285 PNKTQ 289 (341)
T ss_dssp SSCCH
T ss_pred CCCCh
Confidence 65333
No 117
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=43.65 E-value=1.7e+02 Score=31.47 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHHH--Hhc-CCCCCHHHHHHHHHHHHHHh-h
Q 002257 527 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM--TFF-SPTISLEMWSLWPLMMEALA-D 602 (946)
Q Consensus 527 ~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~l--~~~-~~~i~p~l~~l~~~l~~~~~-~ 602 (946)
.++-+..++..+ .|+-+..+...++..+..|+.+......+.|+.+|..= +.. .......+.-+||.+.+... .
T Consensus 271 FL~Ele~iLe~~--~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~H 348 (403)
T 3fga_B 271 FLNELEEILDVI--EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTH 348 (403)
T ss_dssp HHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 455566777765 45567778888888899999988777888888887542 110 01111122244444444322 2
Q ss_pred hHhhhHhhhHHHHHHHHhcCccccc
Q 002257 603 WAIDFFPNILVPLDNYISRGTAHFL 627 (946)
Q Consensus 603 ~~~~~l~~~~~~L~~~i~~~~~~~l 627 (946)
|....-.....+++.+...++.-|-
T Consensus 349 Wn~~v~~l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 349 WNKTIHGLIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred cCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 5544445555666666666665443
No 118
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=40.37 E-value=3e+02 Score=31.62 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=43.6
Q ss_pred HHHHHHHHhcccCCCCCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHhc
Q 002257 369 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPE--LPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 369 ~l~~~l~~~v~p~l~~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~~--~~V~~~Aa~Al~~~~~~~ 444 (946)
.+-..|.++|+|...+.| ++--.+|+. . + .++....++..+++...+++ .++|..|+.-|..|+-..
T Consensus 385 ~Ll~~F~~~ILpT~~sr~--vQFl~Fy~c----s--~-~~~~~~~Fl~~L~~~~~~~~~~~~~RqaAaaYLaSflARA 453 (649)
T 3tj1_A 385 TLTTLFKTHVLPTYYTRS--IQYIMFHVS----Q--Q-QLELMDSFLVTLIDISFAVNEAAEKKIKSLQYLGSYIARA 453 (649)
T ss_dssp HHHHHHHHTTTTSCSCSS--TTHHHHHHH----T--T-SHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHhccccccCcc--HHHHHHHHH----h--C-CHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 445668889999876533 332222222 2 2 34566777777877776553 457899999999998764
No 119
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=37.36 E-value=3.2e+02 Score=29.91 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHhhHHHHHHHhcccchhhHHHHHHHHHHH
Q 002257 527 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSY 577 (946)
Q Consensus 527 ~l~ti~~ll~~~~~~~~~~~~l~~~l~p~i~~~l~~~~~~~~~~~l~ll~~ 577 (946)
.++-+..++..+ .|+-+..+...++..+..|++.......+.|+.+|..
T Consensus 304 FL~eleeile~~--~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N 352 (449)
T 2npp_B 304 FLNELEEILDVI--EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN 352 (449)
T ss_dssp HHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC
Confidence 456666777665 4556777778888889999998877788888888764
No 120
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=34.97 E-value=1e+02 Score=36.12 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHHHhc
Q 002257 414 ALHSVVSGLRDPELPVRVDSVFALRSFVEAC 444 (946)
Q Consensus 414 ~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~ 444 (946)
++| +++.|++++..+|..||.||.+++.+.
T Consensus 36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~~~ 65 (684)
T 4gmo_A 36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQDA 65 (684)
T ss_dssp THH-HHHHHSSSCCSHHHHHHHHHHHHTTSH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHHcCc
Confidence 344 456688999999999999999999764
No 121
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=33.08 E-value=5.3e+02 Score=28.39 Aligned_cols=121 Identities=7% Similarity=0.082 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCC
Q 002257 304 MDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS 383 (946)
Q Consensus 304 ~~ll~~l~~~~~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~ 383 (946)
..++.-|.......++..++..+..+++.. | .-++...++. ....++ ...+.. .+.
T Consensus 80 ~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~---~-------~~~~~~~~f~------~~~~~~----~~l~~~----~~~ 135 (480)
T 1ho8_A 80 IPLIHLLSTSDNEDCKKSVQNLIAELLSSD---K-------YGDDTVKFFQ------EDPKQL----EQLFDV----SLK 135 (480)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHCS---S-------SSHHHHHHHH------HCTTHH----HHHHHH----CSC
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHhcC---c-------chHHHHHHHh------hCcccc----hHHHHH----Hhc
Confidence 335555555555778888888888888752 1 1111111111 111111 122222 224
Q ss_pred CCccchhHHHHHHHHhhhccccCChhHHHHHHH--HHHhcCCCC-CCchHHHHHHHHHHHHHhccccc
Q 002257 384 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALH--SVVSGLRDP-ELPVRVDSVFALRSFVEACRDLN 448 (946)
Q Consensus 384 ~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~--~l~~~L~d~-~~~V~~~Aa~Al~~~~~~~~~~~ 448 (946)
.+.++..-.++.+++..+...+.+.+.+..++. -++..|... +...+..|+.+++.++..++.+.
T Consensus 136 ~dd~~~ll~a~~l~~ll~~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~ 203 (480)
T 1ho8_A 136 GDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRD 203 (480)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred ccchHHHHHHHHHHHHHhccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHH
Confidence 566777777777776665433444566666666 556666542 34556778999998888765333
No 122
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=32.73 E-value=5.2e+02 Score=28.21 Aligned_cols=115 Identities=15% Similarity=0.235 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhhhhcCCcchHHHHHHHHHhcccCCCCC-ccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCC
Q 002257 347 DGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP-VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP 425 (946)
Q Consensus 347 eaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p~l~~~-~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d~ 425 (946)
.-.|-.+|++..|..- +++..-..|+.+.++|..+.+ ...-...-..|+.+|.+ + ++.....++.+++++=--.
T Consensus 222 aeLLeilgSIinGfa~--PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~e-K--Dp~L~~~vi~~LLk~WP~t 296 (449)
T 2npp_B 222 AELLEILGSIINGFAL--PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLE-K--DSTLTEPVVMALLKYWPKT 296 (449)
T ss_dssp HHHHHHHHHHHSSCCS--SCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHH-H--CGGGHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHh-c--CcHhHHHHHHHHHHhCCCC
Confidence 3567788888877532 344456688999999987753 33344455567777755 2 6678888999999886544
Q ss_pred CCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhh
Q 002257 426 ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 467 (946)
Q Consensus 426 ~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~ 467 (946)
+..-.+.-..=|..+++.. .++.++....+++..+...++.
T Consensus 297 ns~KevlFL~eleeile~~-~~~ef~~i~~~lF~~la~ci~S 337 (449)
T 2npp_B 297 HSPKEVMFLNELEEILDVI-EPSEFVKIMEPLFRQLAKCVSS 337 (449)
T ss_dssp CHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHcC
Confidence 4444454555566666654 4566777777777777777765
No 123
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=31.29 E-value=2.2e+02 Score=28.58 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhccCchhhhhc-hhhHHHHHHHHHhcccccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHH
Q 002257 230 RVTNLILQYLSNSISKNSMYNLL-QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 308 (946)
Q Consensus 230 ~~~~~~l~fl~~~~~~~~~~~~l-~~~l~~li~~ii~p~l~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~ 308 (946)
.-++.++..+..++++++++..| +.++ ...++|++-.+... .|-||+ |-++..++.
T Consensus 71 nRVcnaLaLlQcvAshpetr~~Fl~a~i----plyLyPfL~t~sk~------r~fE~L-------------RLtsLGVIg 127 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPETRSAFLAAHI----PLFLYPFLHTVSKT------RPFEYL-------------RLTSLGVIG 127 (268)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHHHTTG----GGGTHHHHHCCCCS------HHHHHH-------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCcchhhHHHHccc----hHHhhhhhccccCC------Ccchhh-------------hhhHHHHHH
Confidence 45788899999999999887654 3333 33456887766653 355554 555666777
Q ss_pred HHHHhcCcccHHH-----HHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhh------hhcCCcchHHHHHHHHHh
Q 002257 309 ELVRKRGKENLQK-----FIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK------LKQTEPYKSELERMLVQH 377 (946)
Q Consensus 309 ~l~~~~~~~~l~~-----ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~------l~~~~~~~~~l~~~l~~~ 377 (946)
++++.-..++... +++.|-..++.. .-..|-.|.+.+.-+-.. +....+--..+...+.+.
T Consensus 128 aLvK~dd~eVi~fLL~tEiiplCLrime~G--------selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~m 199 (268)
T 2fv2_A 128 ALVKTDEQEVINFLLTTEIIPLCLRIMESG--------SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKM 199 (268)
T ss_dssp HHGGGCCHHHHHHHHHTTHHHHHHHHHHHS--------CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHhhhHHHHHHHHHhhc--------cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHH
Confidence 7776544443332 334444444432 234455555555544322 111111111333444444
Q ss_pred cccCCCCCccchhHHHHHHHHhhhc
Q 002257 378 VFPEFSSPVGHLRAKAAWVAGQYAH 402 (946)
Q Consensus 378 v~p~l~~~~~~lr~ra~~~l~~~~~ 402 (946)
|.....++++.|-.-.+.|.-+.++
T Consensus 200 V~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 200 VLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhc
Confidence 4444445666666666666666654
No 124
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=30.24 E-value=4.7e+02 Score=26.90 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=76.4
Q ss_pred cCChhHHHHHHHHHHHHHhhcCC------CCchhhHHHHHHhcchh----------hHHHHHHHHHHHHHh-cccCCCcC
Q 002257 12 QVPPLLRVQLGECLKTIIHADYP------EQWPHLLDWVKHNLQDQ----------QVYGALFVLRILSRK-YEFKSDEE 74 (946)
Q Consensus 12 ~~~~~ir~ql~~~is~Ia~~D~P------~~Wp~Ll~~l~~~l~s~----------~~~~~L~~L~~i~k~-~~~~~~~~ 74 (946)
..+..+|.+.+.+|+.-.+..=| +.||.++..+...|... .+-+-|.+++.+.+. +.|. ..
T Consensus 81 ~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-~~- 158 (315)
T 3qml_C 81 NLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-IY- 158 (315)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC---C-
T ss_pred cCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-hc-
Confidence 46677888888888776665411 36999999988777542 234566666676665 2221 01
Q ss_pred cchHHHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHHHhhhhhhh------cCC------hhhHHHHHHHH
Q 002257 75 RTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQ------LLD------PNVFNAWMILF 142 (946)
Q Consensus 75 ~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~~~~~~lki~~~~~~~~lp~~------~~~------~~~l~~w~~~~ 142 (946)
. +..|.+++... .. ....-..++.++.++|.. ++|.. ... ....+.|.+.+
T Consensus 159 --~--------m~~L~~ly~~~-~~--d~~~k~Kvl~li~d~f~~----~~~~~~~~~~~~~kR~~e~~~~~~q~w~~~~ 221 (315)
T 3qml_C 159 --S--------TVVLQNVYERN-NK--DKQLQIKVLELISKILKA----DMYENDDTNLILFKRNAENWSSNLQEWANEF 221 (315)
T ss_dssp --C--------HHHHHHHHHHT-TT--CHHHHHHHHHHHHHHHHH----HTTC-------------------CHHHHHHH
T ss_pred --c--------HHHHHHHHccC-CC--CHHHHHHHHHHHHHHccc----ccccccccccchhhhcccccCchHHHHHHHH
Confidence 1 23344444421 10 111123345566666641 12211 110 13466799999
Q ss_pred HHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhC
Q 002257 143 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFG 186 (946)
Q Consensus 143 ~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~ 186 (946)
-.+++... .|+. .+ +..|..|..+-..||
T Consensus 222 q~~iq~k~------~dE~--------~~-r~fF~~L~~ik~~~~ 250 (315)
T 3qml_C 222 QEMVQNKS------IDEL--------HT-RTFFDTLYNLKKIFK 250 (315)
T ss_dssp HHHHTCTT------SCHH--------HH-HHHHHHHHHHHHHHG
T ss_pred HHHHhccc------cCHH--------HH-HHHHHHHHHHHHhcc
Confidence 99887632 2432 22 557888888888875
No 125
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=29.54 E-value=5e+02 Score=26.94 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=77.3
Q ss_pred chhhHHHHHHhcc----hh----hHHHHHHHHHHHHHhcccCCCcCcchHHHHHHHHhHHHHHHHHHHhhccCCChhHHH
Q 002257 37 WPHLLDWVKHNLQ----DQ----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVAD 108 (946)
Q Consensus 37 Wp~Ll~~l~~~l~----s~----~~~~~L~~L~~i~k~~~~~~~~~~~~l~~i~~~~~p~L~~i~~~l~~~~~~~~~~~~ 108 (946)
+.+++|.|++.+= ++ +--..|.++..+++++.-.. ...+..|++.+|.+=+.+.++-. .+-++
T Consensus 67 ~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i---~~~vp~Il~~VFe~TL~MI~~df------~eyPe 137 (321)
T 1w9c_A 67 AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI---TAEIPQIFDAVFECTLNMINKDF------EEYPE 137 (321)
T ss_dssp HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGG---GGGHHHHHHHHHHHHHHHHSSTT------TCSHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHhccc------ccChH
Confidence 6667777765442 22 33578888899998876221 12455666666654444333211 12344
Q ss_pred HHHHHHHHhHHHHhhhhhhhc-CChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCC
Q 002257 109 LIKLICKIFWSSIYLEIPKQL-LDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGD 187 (946)
Q Consensus 109 ~~~~~lki~~~~~~~~lp~~~-~~~~~l~~w~~~~~~il~~~~~~~~~~~d~~~~~~~~~~k~k~~~~~~l~~l~~~y~~ 187 (946)
.+.--.|.++.++..-.+..+ ..++.+...++.+.-.+..+. ..+.-..++++..++.+.++
T Consensus 138 hR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~-----------------r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 138 HRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTM-----------------RNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSS-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCC-----------------chHHHHHHHHHHHHHHHHhc
Confidence 444444444444433333222 123445555555444443321 12333455666666665421
Q ss_pred CCCCChhhHHHHHHHHHhhHHHHHHHHHHHHHh
Q 002257 188 LKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 220 (946)
Q Consensus 188 ~~~~~~~~~~f~~~f~~~~~~~~l~~~~~~l~~ 220 (946)
..+++..|..+|.-.+++-++..+.-
T Consensus 201 -------~~~~~~~Fy~~fy~~il~~if~VlTD 226 (321)
T 1w9c_A 201 -------EEAAAQSFYQTYFCDILQHIFSVVTD 226 (321)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -------ChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12456666666666677777777754
No 126
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=29.47 E-value=2.3e+02 Score=25.63 Aligned_cols=89 Identities=13% Similarity=0.221 Sum_probs=58.6
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHhhhhhhh---HHHHHHHHHHhhCCc--
Q 002257 413 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEE-- 487 (946)
Q Consensus 413 ~~~~~l~~~L~d~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l~~il~~Ll~ll~~~~~e~---l~~~L~~iv~~~~~~-- 487 (946)
.-|...++-|.+..+++.-..+..|..++.... .+...|++.+.+-+.++..+. .+.++.+|+...+.+
T Consensus 5 ~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~------~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~ 78 (145)
T 3d9j_A 5 KTFNSELYSLNDYKPPISKAKMTQITKAAIKAI------KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFG 78 (145)
T ss_dssp HHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcC
Confidence 345555666655444565566666666665421 255667777777777766555 568888888887653
Q ss_pred --ccccHHHHHHHHHHHHHHHH
Q 002257 488 --MAPYALGLCQNLAAAFWRCM 507 (946)
Q Consensus 488 --i~p~~~~l~~~L~~~~~~~~ 507 (946)
..+|+..+...|...|..+.
T Consensus 79 ~~~~~f~~~F~~~L~~~f~~~~ 100 (145)
T 3d9j_A 79 QEKDVFAPRFSNNIISTFQNLY 100 (145)
T ss_dssp TTTCSHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHHHHHHH
Confidence 34788888888888876654
No 127
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=27.99 E-value=26 Score=37.03 Aligned_cols=9 Identities=11% Similarity=0.619 Sum_probs=4.1
Q ss_pred HHHHHHccc
Q 002257 664 EVVFQNCKG 672 (946)
Q Consensus 664 ~~il~~~~~ 672 (946)
..|+.++|.
T Consensus 167 ~~mv~r~P~ 175 (335)
T 4fp9_B 167 TKILHSCPS 175 (335)
T ss_dssp HHHHHHCGG
T ss_pred HHHHHhCCh
Confidence 344445544
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.14 E-value=4.9e+02 Score=32.11 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=84.1
Q ss_pred HHHHHHHHHhc---CcccHHHHHHHHHHhhcccCCCCcCCCCchhHhHHHHHHHHHHhhhhcCCcchHHHHHHHHHhccc
Q 002257 304 MDFVSELVRKR---GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFP 380 (946)
Q Consensus 304 ~~ll~~l~~~~---~~~~l~~ll~~i~~~l~~~~~~~~~~~~~~~keaal~alg~ia~~l~~~~~~~~~l~~~l~~~v~p 380 (946)
+.++...|... +.+.++.+..++.+.+++ .+...+-.+|.+||.++.- . .+. .+..+ ++
T Consensus 420 gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~--------~~~~~~~~~LkaLGN~g~p--~------~l~-~l~~~-l~ 481 (1056)
T 1lsh_A 420 GSLVFRYCANTVSCPDELLQPLHDLLSQSSDR--------AKEEEIVLALKALGNAGQP--N------SIK-KIQRF-LP 481 (1056)
T ss_dssp HHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTCG--G------GHH-HHHTT-ST
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc--------CChHHHHHHHHHhhccCCh--h------HHH-HHHHh-hc
Confidence 44444444432 234566666666555543 1456677888888888753 1 122 23333 33
Q ss_pred CCC----CCccchhHHHHHHHHhhhccccCChhHHHHHHHHHHhcCCC--CCCchHHHHHHHHHHHHHhcccccccccch
Q 002257 381 EFS----SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALRSFVEACRDLNEIRPIL 454 (946)
Q Consensus 381 ~l~----~~~~~lr~ra~~~l~~~~~~~f~~~~~~~~~~~~l~~~L~d--~~~~V~~~Aa~Al~~~~~~~~~~~~l~p~l 454 (946)
... +....+|..|+|.+.+++.. .+. .+-+.+++...| .+.-||+.|+..| ++.. |-
T Consensus 482 ~~~~~~~~~~~rvr~aAi~ALr~~~~~---~p~---~v~~il~~i~~n~~e~~EvRiaA~~~L---m~t~-------P~- 544 (1056)
T 1lsh_A 482 GQGKSLDEYSTRVQAEAIMALRNIAKR---DPR---KVQEIVLPIFLNVAIKSELRIRSCIVF---FESK-------PS- 544 (1056)
T ss_dssp TSSSCCCCSCHHHHHHHHHTTTTGGGT---CHH---HHHHHHHHHHHCTTSCHHHHHHHHHHH---HHTC-------CC-
T ss_pred CccccccccchHHHHHHHHHHHHhhhh---chH---HHHHHHHHHhcCCCCChHHHHHHHHHH---HHHC-------cC-
Confidence 321 23456888899999888641 222 233444444433 4566898888775 3321 10
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhhCCcccccHHHHH
Q 002257 455 PQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLC 496 (946)
Q Consensus 455 ~~il~~Ll~ll~~~~~e~l~~~L~~iv~~~~~~i~p~~~~l~ 496 (946)
..+++.+...+..-.+..+...+.+.+..+.+.-.|....+.
T Consensus 545 ~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la 586 (1056)
T 1lsh_A 545 VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVA 586 (1056)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 135556666555433444555555555555555555444443
No 129
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=21.37 E-value=67 Score=27.16 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=32.7
Q ss_pred HHhccc--ccChhhHhhhhcChHHHHHhhccccccccCHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 002257 263 IVFPLM--CFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFI 326 (946)
Q Consensus 263 ii~p~l--~lt~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~l~~~~~~~~l~~ll~~i 326 (946)
-|+|+| +++++|.|. |+.. .....++.||..||..|.+..+...+..++..+
T Consensus 32 ~IL~~L~~~L~~~d~E~--------I~a~----~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~AL 85 (100)
T 2lwd_A 32 DIISDLSECLINQECEE--------ILQI----CSTKGMMAGAEKLVECLLRSDKENWPKTLKLAL 85 (100)
T ss_dssp TTHHHHTTTSCHHHHHH--------HHHH----HHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHH--------HHHH----HHccChHHHHHHHHHHHHhcCcCCcHHHHHHHH
Confidence 345666 677776543 4333 133678999999999998754455555555433
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=21.32 E-value=39 Score=36.35 Aligned_cols=8 Identities=0% Similarity=0.102 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 002257 783 RATLDLLV 790 (946)
Q Consensus 783 ~~~~~ll~ 790 (946)
..+...+.
T Consensus 323 ~~l~~~l~ 330 (386)
T 2ca6_A 323 DEIREVFS 330 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 33333343
Done!