Query 002258
Match_columns 946
No_of_seqs 361 out of 1091
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 20:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1948 Metalloproteinase-rela 100.0 4E-183 8E-188 1543.4 77.8 863 4-924 5-885 (1165)
2 KOG1948 Metalloproteinase-rela 100.0 7.2E-48 1.6E-52 439.7 61.9 746 47-911 129-960 (1165)
3 COG4932 Predicted outer membra 100.0 7E-26 1.5E-30 269.0 34.7 409 38-479 973-1416(1531)
4 COG4932 Predicted outer membra 99.9 1.3E-22 2.9E-27 241.4 35.1 399 144-578 981-1417(1531)
5 PF13620 CarboxypepD_reg: Carb 98.9 3.5E-09 7.5E-14 94.2 8.5 75 327-401 1-80 (82)
6 PF13620 CarboxypepD_reg: Carb 98.9 4.3E-09 9.2E-14 93.6 8.1 74 127-210 1-74 (82)
7 PF13715 DUF4480: Domain of un 98.3 4.3E-06 9.3E-11 75.4 9.3 58 327-385 1-60 (88)
8 PF05738 Cna_B: Cna protein B- 98.2 1.7E-06 3.6E-11 74.6 5.7 61 51-111 1-64 (70)
9 PF13715 DUF4480: Domain of un 98.2 9.6E-06 2.1E-10 73.1 10.9 58 127-196 1-58 (88)
10 PF05738 Cna_B: Cna protein B- 98.2 7.6E-06 1.6E-10 70.5 8.5 61 148-209 1-65 (70)
11 cd03863 M14_CPD_II The second 98.0 1.7E-05 3.7E-10 90.5 8.9 75 326-402 297-373 (375)
12 PF07210 DUF1416: Protein of u 98.0 2.9E-05 6.2E-10 67.5 7.9 58 127-194 9-66 (85)
13 cd06245 M14_CPD_III The third 97.9 4.4E-05 9.5E-10 86.9 9.2 67 326-394 287-353 (363)
14 cd03865 M14_CPE_H Peptidase M1 97.8 4.5E-05 9.7E-10 87.4 8.6 72 327-400 327-399 (402)
15 cd03864 M14_CPN Peptidase M14 97.8 5.2E-05 1.1E-09 87.0 8.9 67 326-394 316-383 (392)
16 cd03868 M14_CPD_I The first ca 97.6 0.00011 2.3E-09 84.5 8.2 67 326-393 296-363 (372)
17 PF07210 DUF1416: Protein of u 97.6 0.00028 6E-09 61.5 8.0 57 222-295 9-65 (85)
18 PF08400 phage_tail_N: Prophag 97.6 0.00037 8E-09 67.2 9.2 62 126-196 3-70 (134)
19 PF08400 phage_tail_N: Prophag 97.5 0.00028 6.2E-09 68.0 8.2 67 325-392 2-79 (134)
20 PRK15036 hydroxyisourate hydro 97.5 0.0002 4.4E-09 69.9 7.1 61 127-194 28-95 (137)
21 cd03866 M14_CPM Peptidase M14 97.5 0.00026 5.7E-09 81.1 9.0 64 326-391 295-361 (376)
22 cd03858 M14_CP_N-E_like Carbox 97.5 0.00032 6.9E-09 80.7 9.0 59 326-385 298-357 (374)
23 cd03863 M14_CPD_II The second 97.4 0.00049 1.1E-08 78.7 9.7 66 221-313 297-364 (375)
24 cd03867 M14_CPZ Peptidase M14- 97.4 0.00046 9.9E-09 79.8 8.6 64 326-391 318-382 (395)
25 cd06245 M14_CPD_III The third 97.2 0.0011 2.5E-08 75.5 9.5 67 126-209 287-353 (363)
26 cd03864 M14_CPN Peptidase M14 97.2 0.0011 2.4E-08 76.2 9.0 68 126-209 316-383 (392)
27 cd03866 M14_CPM Peptidase M14 97.1 0.0016 3.4E-08 74.8 9.6 68 126-207 295-362 (376)
28 COG2373 Large extracellular al 97.1 0.36 7.8E-06 64.6 32.2 184 144-346 316-535 (1621)
29 cd03865 M14_CPE_H Peptidase M1 97.1 0.002 4.3E-08 74.1 9.3 65 222-313 327-392 (402)
30 PRK15036 hydroxyisourate hydro 97.1 0.00091 2E-08 65.4 5.6 55 327-381 28-95 (137)
31 KOG2649 Zinc carboxypeptidase 97.0 0.0018 3.9E-08 73.9 7.7 75 327-403 379-454 (500)
32 cd03858 M14_CP_N-E_like Carbox 96.9 0.0047 1E-07 71.1 10.5 58 126-196 298-355 (374)
33 cd03868 M14_CPD_I The first ca 96.9 0.0035 7.5E-08 72.1 9.1 58 126-196 296-353 (372)
34 PF14686 fn3_3: Polysaccharide 96.9 0.0043 9.3E-08 57.0 7.9 60 127-192 4-70 (95)
35 cd00421 intradiol_dioxygenase 96.7 0.0038 8.2E-08 62.1 7.3 53 126-186 12-80 (146)
36 cd03869 M14_CPX_like Peptidase 96.7 0.0033 7.1E-08 72.3 7.0 64 327-392 330-394 (405)
37 PF14686 fn3_3: Polysaccharide 96.6 0.0056 1.2E-07 56.2 6.9 54 326-379 3-70 (95)
38 TIGR02962 hdxy_isourate hydrox 96.6 0.0052 1.1E-07 58.0 6.6 60 128-194 3-70 (112)
39 cd03867 M14_CPZ Peptidase M14- 96.6 0.009 1.9E-07 69.2 9.7 65 126-206 318-382 (395)
40 TIGR00864 PCC polycystin catio 96.5 7.3 0.00016 54.4 53.2 170 443-637 1831-2021(2740)
41 cd00421 intradiol_dioxygenase 96.5 0.0057 1.2E-07 60.9 6.4 48 326-373 12-80 (146)
42 COG3485 PcaH Protocatechuate 3 96.3 0.0063 1.4E-07 64.3 5.7 52 325-376 72-146 (226)
43 PF11974 MG1: Alpha-2-macroglo 96.2 0.016 3.4E-07 53.5 7.3 46 144-190 24-70 (97)
44 KOG0518 Actin-binding cytoskel 96.1 5.9 0.00013 49.9 53.1 128 54-193 392-529 (1113)
45 COG2373 Large extracellular al 96.0 11 0.00023 51.3 39.9 233 47-290 316-599 (1621)
46 PF00775 Dioxygenase_C: Dioxyg 95.9 0.012 2.6E-07 60.7 5.7 48 326-373 30-98 (183)
47 PF00775 Dioxygenase_C: Dioxyg 95.8 0.032 7E-07 57.6 8.3 68 221-289 30-99 (183)
48 cd03464 3,4-PCD_beta Protocate 95.8 0.012 2.6E-07 62.2 5.2 48 326-373 66-137 (220)
49 PF09430 DUF2012: Protein of u 95.7 0.024 5.1E-07 54.7 6.3 51 340-391 7-61 (123)
50 cd03459 3,4-PCD Protocatechuat 95.6 0.016 3.5E-07 58.3 4.9 48 326-373 16-87 (158)
51 cd03459 3,4-PCD Protocatechuat 95.6 0.033 7.1E-07 56.1 7.1 69 221-289 16-88 (158)
52 TIGR02962 hdxy_isourate hydrox 95.6 0.019 4E-07 54.3 4.9 54 328-381 3-70 (112)
53 cd05822 TLP_HIUase HIUase (5-h 95.5 0.038 8.2E-07 52.2 6.7 51 144-194 12-70 (112)
54 TIGR02465 chlorocat_1_2 chloro 95.5 0.014 3.1E-07 62.6 4.4 48 326-373 99-165 (246)
55 TIGR02422 protocat_beta protoc 95.4 0.024 5.1E-07 60.0 5.7 48 326-373 61-132 (220)
56 cd03463 3,4-PCD_alpha Protocat 95.4 0.037 8E-07 57.1 6.9 66 221-288 37-107 (185)
57 TIGR02438 catachol_actin catec 95.3 0.018 3.8E-07 62.9 4.6 48 326-373 133-199 (281)
58 cd03460 1,2-CTD Catechol 1,2 d 95.3 0.022 4.7E-07 62.3 5.0 48 326-373 125-191 (282)
59 cd03458 Catechol_intradiol_dio 95.3 0.025 5.5E-07 61.0 5.4 49 326-374 105-172 (256)
60 KOG0518 Actin-binding cytoskel 95.2 13 0.00028 47.1 48.2 26 354-379 625-652 (1113)
61 cd03463 3,4-PCD_alpha Protocat 95.2 0.029 6.4E-07 57.8 5.5 48 326-373 37-107 (185)
62 TIGR02439 catechol_proteo cate 95.2 0.024 5.2E-07 62.1 5.1 48 326-373 129-195 (285)
63 TIGR02465 chlorocat_1_2 chloro 95.2 0.039 8.6E-07 59.3 6.6 65 221-288 99-165 (246)
64 PF10670 DUF4198: Domain of un 95.2 0.076 1.6E-06 55.9 8.7 64 219-293 149-212 (215)
65 PF09430 DUF2012: Protein of u 95.2 0.057 1.2E-06 52.1 7.0 56 146-206 5-61 (123)
66 cd03458 Catechol_intradiol_dio 95.1 0.058 1.3E-06 58.3 7.7 55 126-188 105-173 (256)
67 COG3485 PcaH Protocatechuate 3 95.1 0.036 7.8E-07 58.7 6.0 62 125-194 72-151 (226)
68 cd03462 1,2-CCD chlorocatechol 95.1 0.022 4.7E-07 61.2 4.4 48 326-373 100-166 (247)
69 cd03461 1,2-HQD Hydroxyquinol 95.1 0.026 5.7E-07 61.6 5.1 48 326-373 121-187 (277)
70 cd05469 Transthyretin_like Tra 95.0 0.06 1.3E-06 50.8 6.4 60 128-194 3-70 (113)
71 TIGR02423 protocat_alph protoc 95.0 0.031 6.7E-07 58.0 4.9 48 326-373 40-111 (193)
72 COG2351 Transthyretin-like pro 95.0 0.045 9.8E-07 51.2 5.3 60 128-194 11-78 (124)
73 PF10670 DUF4198: Domain of un 94.9 0.083 1.8E-06 55.6 8.2 57 125-190 150-211 (215)
74 cd05821 TLP_Transthyretin Tran 94.9 0.058 1.3E-06 51.5 6.2 60 128-194 9-76 (121)
75 cd03464 3,4-PCD_beta Protocate 94.9 0.068 1.5E-06 56.5 7.2 68 221-288 66-137 (220)
76 TIGR02439 catechol_proteo cate 94.9 0.047 1E-06 59.9 6.2 67 221-289 129-196 (285)
77 cd03462 1,2-CCD chlorocatechol 94.8 0.058 1.3E-06 57.9 6.6 67 221-289 100-167 (247)
78 TIGR02423 protocat_alph protoc 94.8 0.075 1.6E-06 55.2 7.1 66 221-288 40-111 (193)
79 PF08308 PEGA: PEGA domain; I 94.8 0.11 2.4E-06 44.8 7.1 50 340-394 10-59 (71)
80 TIGR02438 catachol_actin catec 94.7 0.059 1.3E-06 58.9 6.5 67 221-289 133-200 (281)
81 TIGR02422 protocat_beta protoc 94.7 0.081 1.8E-06 56.0 7.3 69 221-289 61-133 (220)
82 smart00095 TR_THY Transthyreti 94.6 0.086 1.9E-06 50.4 6.4 60 128-194 6-73 (121)
83 PF00576 Transthyretin: HIUase 94.6 0.04 8.6E-07 52.1 4.1 59 128-193 3-70 (112)
84 cd03460 1,2-CTD Catechol 1,2 d 94.4 0.061 1.3E-06 58.9 5.6 55 126-188 125-193 (282)
85 cd03461 1,2-HQD Hydroxyquinol 94.2 0.083 1.8E-06 57.8 6.2 55 126-188 121-189 (277)
86 PF11974 MG1: Alpha-2-macroglo 94.1 0.17 3.7E-06 46.7 7.1 45 230-291 24-69 (97)
87 KOG2649 Zinc carboxypeptidase 94.0 0.12 2.5E-06 59.6 7.1 65 127-207 379-443 (500)
88 cd03869 M14_CPX_like Peptidase 93.9 0.16 3.6E-06 58.6 8.2 66 126-207 329-394 (405)
89 PF00576 Transthyretin: HIUase 93.3 0.22 4.7E-06 47.2 6.5 57 223-291 3-66 (112)
90 cd05822 TLP_HIUase HIUase (5-h 92.6 0.23 5E-06 47.0 5.5 53 328-380 3-69 (112)
91 COG1470 Predicted membrane pro 92.3 20 0.00043 41.8 21.2 55 328-384 189-244 (513)
92 PF02369 Big_1: Bacterial Ig-l 92.1 0.54 1.2E-05 43.6 7.3 55 326-380 25-91 (100)
93 KOG3006 Transthyretin and rela 91.7 0.38 8.3E-06 45.1 5.6 62 125-193 20-89 (132)
94 cd05821 TLP_Transthyretin Tran 91.5 0.48 1E-05 45.3 6.3 56 223-291 9-71 (121)
95 cd03457 intradiol_dioxygenase_ 91.2 0.34 7.3E-06 50.3 5.4 55 126-187 27-102 (188)
96 cd05469 Transthyretin_like Tra 91.2 0.59 1.3E-05 44.2 6.5 56 224-291 4-65 (113)
97 PF01060 DUF290: Transthyretin 90.8 0.56 1.2E-05 41.6 5.8 55 224-290 1-55 (80)
98 smart00634 BID_1 Bacterial Ig- 90.6 0.91 2E-05 41.3 7.2 55 327-381 21-86 (92)
99 smart00095 TR_THY Transthyreti 90.5 0.7 1.5E-05 44.3 6.4 56 223-291 6-68 (121)
100 PF01060 DUF290: Transthyretin 90.5 0.68 1.5E-05 41.1 6.0 38 145-182 8-49 (80)
101 PF02369 Big_1: Bacterial Ig-l 90.2 1.3 2.8E-05 41.1 7.8 62 126-195 25-93 (100)
102 TIGR00864 PCC polycystin catio 89.9 1.1E+02 0.0025 43.5 44.9 122 442-587 1660-1786(2740)
103 cd03457 intradiol_dioxygenase_ 89.9 0.91 2E-05 47.1 7.2 65 222-288 28-101 (188)
104 PF07495 Y_Y_Y: Y_Y_Y domain; 89.6 0.76 1.7E-05 38.6 5.4 41 532-577 24-65 (66)
105 COG2351 Transthyretin-like pro 88.4 0.87 1.9E-05 42.9 5.2 54 327-380 10-77 (124)
106 COG5266 CbiK ABC-type Co2+ tra 87.8 2.1 4.5E-05 45.8 8.2 73 220-295 171-243 (264)
107 COG5266 CbiK ABC-type Co2+ tra 86.4 2.4 5.3E-05 45.4 7.8 59 125-192 171-242 (264)
108 PF11589 DUF3244: Domain of un 86.0 2 4.4E-05 40.2 6.4 49 50-98 46-99 (106)
109 PF08308 PEGA: PEGA domain; I 85.2 2.7 5.9E-05 36.0 6.3 52 147-210 9-60 (71)
110 cd00222 CollagenBindB Collagen 84.8 53 0.0012 34.1 17.4 123 145-291 19-162 (187)
111 PF12866 DUF3823: Protein of u 84.7 9.6 0.00021 40.7 11.4 83 320-405 16-114 (222)
112 cd00222 CollagenBindB Collagen 84.3 56 0.0012 34.0 16.7 127 50-197 21-172 (187)
113 PF10794 DUF2606: Protein of u 84.2 2.7 5.8E-05 39.5 6.0 53 327-379 43-108 (131)
114 PF07495 Y_Y_Y: Y_Y_Y domain; 82.5 2.6 5.6E-05 35.4 5.0 25 270-294 24-49 (66)
115 PF01190 Pollen_Ole_e_I: Polle 81.9 2.4 5.2E-05 38.9 4.9 32 337-369 18-58 (97)
116 PF10794 DUF2606: Protein of u 77.9 8.5 0.00018 36.4 6.9 74 113-194 29-110 (131)
117 KOG3006 Transthyretin and rela 77.8 2.7 5.9E-05 39.6 3.8 57 324-380 19-89 (132)
118 TIGR03503 conserved hypothetic 76.3 1.2E+02 0.0026 35.0 17.0 45 440-491 169-219 (374)
119 PF06427 UDP-g_GGTase: UDP-glu 75.6 7.2 0.00016 41.3 6.7 70 84-160 126-200 (211)
120 PF01190 Pollen_Ole_e_I: Polle 75.3 8.1 0.00018 35.4 6.3 41 145-186 18-62 (97)
121 COG3188 FimD P pilus assembly 73.7 77 0.0017 40.6 16.3 139 220-370 651-800 (835)
122 PRK15207 long polar fimbrial o 72.8 47 0.001 42.7 14.3 107 268-375 698-811 (842)
123 PRK12813 flgD flagellar basal 72.8 16 0.00036 38.9 8.6 45 146-190 121-173 (223)
124 PF13860 FlgD_ig: FlgD Ig-like 71.6 11 0.00025 33.3 6.1 45 146-190 22-77 (81)
125 PF01835 A2M_N: MG2 domain; I 69.8 21 0.00047 32.4 7.8 42 150-191 37-86 (99)
126 PRK15310 fimbrial outer membra 69.6 38 0.00083 42.7 11.8 36 326-363 786-821 (895)
127 PRK06655 flgD flagellar basal 69.5 29 0.00062 37.2 9.6 45 146-190 123-178 (225)
128 smart00634 BID_1 Bacterial Ig- 68.3 14 0.00031 33.4 6.1 62 855-918 17-85 (92)
129 PRK15223 pilin outer membrane 66.3 72 0.0016 41.0 14.0 108 267-375 695-808 (836)
130 PRK15310 fimbrial outer membra 65.6 47 0.001 41.9 11.5 110 145-279 692-822 (895)
131 PRK15213 fimbrial outer membra 65.4 93 0.002 39.8 14.7 125 267-400 665-794 (797)
132 PF11589 DUF3244: Domain of un 65.1 24 0.00051 33.0 7.1 48 146-193 45-96 (106)
133 COG1470 Predicted membrane pro 64.2 3E+02 0.0065 32.6 33.6 89 533-632 216-309 (513)
134 PF09912 DUF2141: Uncharacteri 64.0 8.4 0.00018 36.5 3.9 36 531-572 38-73 (112)
135 PRK15284 putative fimbrial out 63.9 79 0.0017 40.9 13.7 107 268-375 706-817 (881)
136 PRK12813 flgD flagellar basal 62.6 43 0.00093 35.8 9.3 13 448-460 162-174 (223)
137 PRK06655 flgD flagellar basal 61.9 33 0.00071 36.8 8.3 13 448-460 167-179 (225)
138 PF14289 DUF4369: Domain of un 61.6 1.1E+02 0.0025 27.6 11.1 49 125-186 12-64 (106)
139 PRK15248 fimbrial outer membra 61.2 71 0.0015 41.1 12.6 107 268-375 710-821 (853)
140 PF13860 FlgD_ig: FlgD Ig-like 60.9 16 0.00036 32.3 5.0 43 51-93 24-77 (81)
141 PRK15217 fimbrial outer membra 59.6 98 0.0021 39.8 13.4 109 266-375 688-801 (826)
142 PRK15298 fimbrial outer membra 59.2 2.2E+02 0.0048 36.8 16.5 108 267-375 706-820 (848)
143 PF12866 DUF3823: Protein of u 59.1 67 0.0015 34.4 10.0 84 120-210 16-105 (222)
144 PRK15273 putative fimbrial out 58.8 1.1E+02 0.0025 39.5 13.8 107 268-375 683-794 (881)
145 PF13750 Big_3_3: Bacterial Ig 58.3 2.1E+02 0.0046 28.8 14.3 106 444-555 7-132 (158)
146 TIGR03503 conserved hypothetic 58.0 3.5E+02 0.0076 31.3 18.3 95 533-637 168-284 (374)
147 PRK15294 putative fimbrial out 57.8 1.1E+02 0.0024 39.5 13.5 107 268-375 701-814 (845)
148 PF14347 DUF4399: Domain of un 57.6 23 0.0005 32.0 5.3 48 331-379 25-72 (87)
149 PRK15304 putative fimbrial out 56.6 1.7E+02 0.0037 37.5 14.8 106 268-374 659-769 (801)
150 PRK12633 flgD flagellar basal 56.5 52 0.0011 35.4 8.7 14 448-461 170-183 (230)
151 PRK09619 flgD flagellar basal 55.9 46 0.00099 35.5 8.1 13 448-460 160-172 (218)
152 PF01835 A2M_N: MG2 domain; I 54.5 49 0.0011 30.1 7.2 25 354-378 57-86 (99)
153 PF11008 DUF2846: Protein of u 53.5 24 0.00052 33.5 5.1 38 340-378 40-77 (117)
154 PF05688 DUF824: Salmonella re 52.7 25 0.00054 28.0 4.0 31 858-888 13-43 (47)
155 PRK15207 long polar fimbrial o 52.5 79 0.0017 40.7 10.9 96 814-912 698-810 (842)
156 KOG1692 Putative cargo transpo 52.1 24 0.00051 36.4 4.9 60 50-110 53-112 (201)
157 KOG3306 Predicted membrane pro 52.0 21 0.00046 35.9 4.4 41 343-385 13-56 (185)
158 PRK09828 putative fimbrial out 51.1 1.4E+02 0.0031 38.6 13.0 107 268-375 718-829 (865)
159 PRK15235 outer membrane fimbri 49.9 1.9E+02 0.0042 37.1 13.7 108 267-375 668-784 (814)
160 PRK12633 flgD flagellar basal 49.2 39 0.00085 36.3 6.4 45 146-190 126-181 (230)
161 PRK12812 flgD flagellar basal 48.8 1.2E+02 0.0025 33.3 10.0 45 146-190 138-193 (259)
162 PF13953 PapC_C: PapC C-termin 48.7 33 0.00071 29.3 4.7 45 331-375 2-49 (68)
163 KOG1690 emp24/gp25L/p24 family 48.7 1E+02 0.0022 32.1 8.8 46 53-98 66-114 (215)
164 PF05751 FixH: FixH; InterPro 48.1 90 0.002 30.5 8.4 51 325-375 68-130 (146)
165 PRK14081 triple tyrosine motif 47.6 6.6E+02 0.014 31.4 50.9 196 348-554 425-647 (667)
166 PRK15235 outer membrane fimbri 46.7 1.1E+02 0.0024 39.3 10.8 98 813-912 668-783 (814)
167 PF13754 Big_3_4: Bacterial Ig 46.5 75 0.0016 25.8 6.2 42 68-109 5-50 (54)
168 PRK05842 flgD flagellar basal 45.5 44 0.00096 37.2 6.1 44 147-190 164-220 (295)
169 PF11008 DUF2846: Protein of u 44.8 49 0.0011 31.4 5.7 40 71-111 55-94 (117)
170 smart00557 IG_FLMN Filamin-typ 43.8 60 0.0013 29.4 5.9 41 52-93 32-76 (93)
171 PF06488 L_lac_phage_MSP: Lact 43.8 2.7E+02 0.0059 29.1 10.9 43 417-459 236-285 (301)
172 PF13750 Big_3_3: Bacterial Ig 43.2 3.6E+02 0.0079 27.1 12.4 16 173-188 6-21 (158)
173 PRK15193 outer membrane usher 43.1 2.5E+02 0.0054 36.4 13.3 107 267-375 734-845 (876)
174 PF03785 Peptidase_C25_C: Pept 42.1 1.2E+02 0.0027 27.0 7.1 46 148-196 25-75 (81)
175 PF13115 YtkA: YtkA-like 42.1 72 0.0016 28.1 6.1 47 327-375 23-85 (86)
176 PF14289 DUF4369: Domain of un 42.1 1.2E+02 0.0027 27.4 7.9 41 52-93 24-68 (106)
177 PF09154 DUF1939: Domain of un 41.6 28 0.00061 28.9 3.0 32 155-187 25-56 (57)
178 PF13753 SWM_repeat: Putative 40.8 5.6E+02 0.012 28.6 16.2 49 325-376 62-117 (317)
179 PRK09619 flgD flagellar basal 40.8 47 0.001 35.4 5.3 42 51-93 122-171 (218)
180 PF04151 PPC: Bacterial pre-pe 40.6 66 0.0014 27.3 5.3 18 895-912 50-67 (70)
181 PRK12634 flgD flagellar basal 40.4 47 0.001 35.5 5.3 43 51-93 121-174 (221)
182 PRK15316 RatA-like protein; Pr 40.1 41 0.0009 45.4 5.5 76 826-902 1562-1668(2683)
183 PF13754 Big_3_4: Bacterial Ig 39.9 89 0.0019 25.4 5.7 27 435-461 5-34 (54)
184 KOG3306 Predicted membrane pro 38.9 79 0.0017 32.0 6.1 49 56-107 13-61 (185)
185 PF00041 fn3: Fibronectin type 38.8 2.4E+02 0.0052 23.8 9.3 26 529-554 49-75 (85)
186 PRK12634 flgD flagellar basal 38.3 75 0.0016 34.0 6.4 44 147-190 120-174 (221)
187 PF09154 DUF1939: Domain of un 37.8 62 0.0013 26.9 4.4 32 423-455 24-55 (57)
188 PRK15255 fimbrial outer membra 36.4 3.9E+02 0.0085 34.5 13.5 99 269-368 690-793 (829)
189 PRK12812 flgD flagellar basal 36.3 80 0.0017 34.6 6.3 43 51-93 140-193 (259)
190 COG4384 Mu-like prophage prote 34.9 2.4E+02 0.0051 29.2 8.8 49 145-194 61-110 (203)
191 PF10633 NPCBM_assoc: NPCBM-as 34.2 1.2E+02 0.0026 26.4 6.0 44 858-908 7-50 (78)
192 PF09912 DUF2141: Uncharacteri 33.9 81 0.0018 29.8 5.3 23 169-191 40-62 (112)
193 smart00557 IG_FLMN Filamin-typ 32.5 2.7E+02 0.0058 25.1 8.3 50 147-196 30-82 (93)
194 TIGR03000 plancto_dom_1 Planct 32.4 60 0.0013 28.5 3.7 36 341-376 11-49 (75)
195 PRK10301 hypothetical protein; 32.2 86 0.0019 30.3 5.2 43 48-90 55-104 (124)
196 PRK05842 flgD flagellar basal 31.9 93 0.002 34.7 6.0 43 51-93 165-220 (295)
197 PRK15248 fimbrial outer membra 31.6 2E+02 0.0043 37.2 9.8 94 814-912 710-820 (853)
198 KOG1690 emp24/gp25L/p24 family 31.6 1.5E+02 0.0033 30.9 7.0 35 162-196 80-116 (215)
199 KOG1879 UDP-glucose:glycoprote 31.2 1.6E+02 0.0036 38.7 8.6 111 72-190 987-1102(1470)
200 PRK15198 outer membrane usher 31.2 4.6E+02 0.0099 34.0 13.0 107 267-375 714-825 (860)
201 PF04234 CopC: CopC domain; I 30.9 96 0.0021 28.4 5.1 30 174-205 63-96 (97)
202 PF14054 DUF4249: Domain of un 29.7 1.2E+02 0.0026 33.5 6.6 56 146-203 58-120 (298)
203 PF10577 UPF0560: Uncharacteri 29.4 68 0.0015 40.1 4.8 53 785-847 14-67 (807)
204 PRK15223 pilin outer membrane 29.4 3.1E+02 0.0067 35.4 11.0 95 814-912 696-807 (836)
205 PF03785 Peptidase_C25_C: Pept 29.3 2.1E+02 0.0045 25.6 6.4 42 50-93 24-69 (81)
206 PF04234 CopC: CopC domain; I 27.7 28 0.0006 32.0 0.9 45 47-91 28-78 (97)
207 PF00041 fn3: Fibronectin type 27.2 2.8E+02 0.006 23.4 7.3 45 145-189 27-74 (85)
208 PRK15298 fimbrial outer membra 27.1 6.4E+02 0.014 32.7 13.2 96 814-912 707-819 (848)
209 PF00630 Filamin: Filamin/ABP2 26.5 1.2E+02 0.0025 27.5 4.9 41 52-93 42-90 (101)
210 PRK15304 putative fimbrial out 26.4 3.2E+02 0.0068 35.1 10.3 94 814-912 659-769 (801)
211 PRK13211 N-acetylglucosamine-b 26.4 3.9E+02 0.0084 32.0 10.2 45 326-377 341-387 (478)
212 KOG1692 Putative cargo transpo 26.3 79 0.0017 32.7 3.9 46 147-192 53-98 (201)
213 KOG1691 emp24/gp25L/p24 family 25.2 1.8E+02 0.004 30.6 6.4 48 149-196 60-109 (210)
214 PF11797 DUF3324: Protein of u 25.1 70 0.0015 31.5 3.3 24 542-570 102-125 (140)
215 KOG1691 emp24/gp25L/p24 family 24.8 2.5E+02 0.0055 29.6 7.3 42 52-93 60-101 (210)
216 PRK15284 putative fimbrial out 24.0 3.9E+02 0.0084 34.7 10.5 94 814-912 706-816 (881)
217 TIGR00868 hCaCC calcium-activa 23.9 1.1E+03 0.024 30.6 14.1 27 166-192 653-682 (863)
218 PRK15273 putative fimbrial out 22.7 4.4E+02 0.0095 34.3 10.6 94 814-912 683-793 (881)
219 PF13753 SWM_repeat: Putative 22.3 1.1E+03 0.024 26.2 24.9 38 150-189 75-117 (317)
220 PF06488 L_lac_phage_MSP: Lact 22.3 1.3E+02 0.0029 31.3 4.6 50 147-196 235-291 (301)
221 KOG3287 Membrane trafficking p 21.7 5.8E+02 0.013 27.2 9.1 42 150-191 72-113 (236)
222 PF10577 UPF0560: Uncharacteri 21.6 1.9E+02 0.0042 36.3 6.6 59 327-385 2-67 (807)
223 PF03404 Mo-co_dimer: Mo-co ox 20.6 3.8E+02 0.0082 26.1 7.3 55 325-379 28-101 (131)
224 PF14900 DUF4493: Domain of un 20.6 5.2E+02 0.011 27.6 9.2 35 445-480 59-95 (235)
225 PF10648 Gmad2: Immunoglobulin 20.5 4.1E+02 0.0089 24.0 7.0 39 151-189 31-79 (88)
226 COG2372 CopC Uncharacterized p 20.4 2.7E+02 0.0059 27.1 6.1 35 55-89 63-104 (127)
227 COG3188 FimD P pilus assembly 20.4 1.9E+03 0.042 28.3 15.8 103 165-286 693-801 (835)
No 1
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-183 Score=1543.36 Aligned_cols=863 Identities=40% Similarity=0.699 Sum_probs=785.7
Q ss_pred cchhhhhhhhhhhhcccCCCeEEeecceeeeccccccccccCCCCccccceEEEEEeCCCCEEEEEEeCC-CcEEEcCCC
Q 002258 4 RDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAP-NGYYFIPVY 82 (946)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~v~gcggfv~~~~~~~~~~~~~d~~i~~sgv~V~L~~~~G~~~~~t~t~~-nG~y~ip~l 82 (946)
--++++||++++..+.+++|+|+||||||| +|++||||.++|+|+|.+|.+|++|+|+| |||||||+|
T Consensus 5 ~~~~vvlLI~ls~~a~~sed~VvgCgGfVk-----------Sd~eidyS~ievkL~Tk~G~lKd~tdcaPsNGYfmIPvY 73 (1165)
T KOG1948|consen 5 CHMGVVLLILLSLLAPGSEDNVVGCGGFVK-----------SDSEIDYSQIEVKLLTKEGHLKDETDCAPSNGYFMIPVY 73 (1165)
T ss_pred eeehhhhhhhhhcccCCceeeEEeccceee-----------cCCccceeeEEEEEEeeccccccccccCCCCceEEEEEe
Confidence 347788899999999999999999999994 89999999999999999999999999999 999999999
Q ss_pred CCccEEEEEEcCCCcccCCceeEEEEcC--CCcCCCceeeEEEeCcEEEeEEEeccCCccccCCCCCCcceEEEEEeCCC
Q 002258 83 DKGSFVIKVNGPEGWSWNPDKVAVTVDD--TGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG 160 (946)
Q Consensus 83 ~~G~Y~l~v~~P~G~~~~p~~v~v~vd~--~~~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g 160 (946)
++|+|.|++++|.||+|+|++++++||+ |.|+.+.||||.|+||+|+|+|..+. +.+++||.|+|++..+
T Consensus 74 dKGdyiLkIspP~GwsfePd~Vel~vDGktd~Cs~n~DinFhftGFsv~GkVlgaa--------ggGpagV~velrs~e~ 145 (1165)
T KOG1948|consen 74 DKGDYILKISPPAGWSFEPDSVELKVDGKTDACSLNEDINFHFTGFSVRGKVLGAA--------GGGPAGVLVELRSQED 145 (1165)
T ss_pred cCCcEEEEecCCCCccccCceEEEEeccccccccCCCceEEEEeeeeEeeEEeecc--------CCCcccceeecccccC
Confidence 9999999999999999999999999997 79999999999999999999999873 4699999999998754
Q ss_pred cEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEEccCCeeeeeeeeccceEEeEEEeeCCCceeceEEE
Q 002258 161 DLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIY 240 (946)
Q Consensus 161 ~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v~~~~~~v~~~l~v~g~~v~G~V~~~G~Pi~Ga~V~ 240 (946)
.+++|.|+++|+|.|.+++||+|.|+++||.|.+..++++.|++...+..+++.|.+.||++.|+|+++++|+.|+.+.
T Consensus 146 -~iast~T~~~Gky~f~~iiPG~Yev~ashp~w~~~~ag~tvvev~~a~~~va~~f~VsGydl~gsv~s~s~P~~gv~~~ 224 (1165)
T KOG1948|consen 146 -PIASTKTEDGGKYEFRNIIPGKYEVSASHPAWECISAGKTVVEVKNAPVVVAPNFKVSGYDLEGSVRSESMPFVGVVMT 224 (1165)
T ss_pred -cceeeEecCCCeEEEEecCCCceEEeccCcceeEeecCcEEEEeCCCccccCCceEEEeeeeEEEEeccCCcccceEEE
Confidence 4899999999999999999999999999999999877777788877777788999999999999999999999999999
Q ss_pred EEECCCC---cccCCCCCC--CccCc-cceeeEEEecCCceEEECCcCCeeEEEEEEEcCCceEEEecCceEEEEEeccc
Q 002258 241 LYSDDVG---KVDCPQGSG--NALGE-RKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQH 314 (946)
Q Consensus 241 L~~~~~~---~~~c~~g~~--~~~~~-g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~ 314 (946)
|+..+.. ..+|..+.. +.+.. ...+|.+++|++|+|.|.++|+|.|++.+.|.+++..||++|..++++|+|++
T Consensus 225 l~s~~v~~~dvpkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGkY~l~a~y~ge~~~fdvSP~~l~v~Vehd~ 304 (1165)
T KOG1948|consen 225 LYSTSVIDLDVPKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGKYYLAASYVGEPKSFDVSPNPLKVVVEHDH 304 (1165)
T ss_pred EEEcccccccCCccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCCEEEEEEecCCceEEEeCCCceeEEEeccc
Confidence 9998753 445654421 22222 23689999999999999999999999999999999999999999999999999
Q ss_pred eeeeceeEEEeeEEEeEEEcC-CCCeeeceEEEEccEEeeEeCCCceEEEcc-cCCceEEEEEEeccceecceeeEEEcc
Q 002258 315 VTVPEKFQVTGFSVGGRVVDE-NDMGVEGVKILVDGHERSITDRDGYYKLDQ-VTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (946)
Q Consensus 315 ~~l~~~f~~~g~sV~G~V~d~-~G~pl~ga~V~l~G~~~~~TD~~G~f~~~~-L~pG~Y~I~a~~~~y~~~~~~~v~v~p 392 (946)
+++++.|+++||+|+|||++. +|.|++||.|.+||+..+.||++|+|+|+| +..|+|+|+|.+++++|++.. +++.|
T Consensus 305 lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvngk~~~kTdaqGyykLen~~t~gtytI~a~kehlqFstv~-~kv~p 383 (1165)
T KOG1948|consen 305 LQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNGKSGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTVH-AKVKP 383 (1165)
T ss_pred eeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcCcccceEcccceEEeeeeeccCcEEEEEeccceeeeeEE-EEecC
Confidence 999999999999999999987 899999999999999999999999999999 789999999999999999995 89999
Q ss_pred CcceeceEEEeeeEEEEEEEEcCCcccEEEEEEeCCCcccceeeeeCCc-eEEEEEEcCeeEEEEEEeeCCCCCCceEEc
Q 002258 393 NMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNN-GNFCFEVPPGEYRLSAMAATPESSSGILFL 471 (946)
Q Consensus 393 ~~~~i~dI~~~~~~v~G~V~~~~~~~~a~VtL~~~~~~~~~~~~~Td~~-G~F~f~l~pG~Y~v~~~~~~~e~~~G~~~~ 471 (946)
++++++||++..|+|||+|+... ..+.+.|+....+.+....+|++. |+|||.++||.|+|+++.++++.++|+.|.
T Consensus 384 ntasLpdI~a~~fdiCGqV~~~~--k~~nv~lt~~~s~~k~s~~~t~etdGsfCf~vppG~ytievl~~ta~~aagl~l~ 461 (1165)
T KOG1948|consen 384 NTASLPDITAQKFDICGQVEKSE--KGVNVKLTFTRSDDKRSLEITPETDGSFCFPVPPGLYTIEVLDKTASGAAGLLLT 461 (1165)
T ss_pred CccccccccccceeeeeEEEEcc--ccceeEEEEccCccccccccccccCCceeEEcCCccEEEEEeccCcccccccEee
Confidence 99999999999999999998655 445566654333333334445544 999999999999999999999999999999
Q ss_pred CCeEEEEE-cCcccceEEEEeeeEEEEEEEeccCCCCceEEEEEEcCcccccCCcceeEEEeeCCccEEEcccCCccEEE
Q 002258 472 PPYADVVV-KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRL 550 (946)
Q Consensus 472 p~~~~V~V-~~pv~~i~F~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~t~~~G~f~f~~v~PG~Y~v 550 (946)
|..++++| +.|+++|.|+|++++|+|+|+|++.|+ .+.|+|+..... ....+.++.+++.++|.|+|++||+|++
T Consensus 462 P~~~~veV~~~pv~ni~Fsqfranv~g~lsCl~tCg-~a~vtlq~la~G---q~~~~~vk~td~~~~ftF~nilPGkY~~ 537 (1165)
T KOG1948|consen 462 PRLLEVEVLKNPVTNIRFSQFRANVNGHLSCLGTCG-TATVTLQLLAAG---QTLVRSVKGTDESSVFTFENILPGKYSA 537 (1165)
T ss_pred eeeeeEEeecCcccceehhhhhhccceEEEeccCCC-ceeEEEEecccC---CcceeeEEEEeeccEEEeeccCCcceEE
Confidence 99999999 589999999999999999999999999 789999987332 1244566679999999999999999999
Q ss_pred EEEeeccccccCCCCeeEeeeeEEEEeecCccccceEEEeeeEEEEEecceeeEEEEeeCCCeee---EEecccceeEEe
Q 002258 551 EVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVP---LKVKKGSQHICV 627 (946)
Q Consensus 551 ~v~~~~~~~~~~~~~~cw~~~~~~v~V~~~~~~~i~f~q~Gy~~~i~~sh~~~~~~~~~~~~~~~---~~l~~G~~~~cv 627 (946)
+++ |+++|||++++|+++|.++|+.+|+|+|+|||++|++||+++++|+|+++...+ ++|.||.|+||+
T Consensus 538 ~i~--------d~~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~iisSH~a~~e~~h~dg~~en~~~lki~kgvn~iCv 609 (1165)
T KOG1948|consen 538 RID--------DNGRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQIISSHPAEIEWSHADGKQENGKTLKIGKGVNSICV 609 (1165)
T ss_pred Eec--------cCCCceeecceEEEEeecccccccceeeccEEEEEEecCceeeEEecCCCCCCCcceEEecCcceEEEc
Confidence 998 479999999999999999999999999999999999999999999999988776 899999999999
Q ss_pred cCCceeEEEecCCceecCCCceEEeCCCCceeEEEEEEEEEEEEEEEeecCCCccccCCcceEEEEecCCCceecccccc
Q 002258 628 ESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTAT 707 (946)
Q Consensus 628 ~~~G~y~~~~~~sC~~f~~~~~~~~t~~~~~i~l~a~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 707 (946)
++||.|.+.+ .+||.|+.+++++++..+.+.+++|+..+++|.|.++..+... ..+++++++++++..++.++....
T Consensus 610 ~kpGs~~~~~-~sc~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~-~s~~~k~v~e~~~~k~evit~~a~- 686 (1165)
T KOG1948|consen 610 PKPGSYDVSL-GSCYTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAA-VSIREKFVVEIQDIKSEVITREAQ- 686 (1165)
T ss_pred cCCccceeec-cceeecccCCceeecCCCcchHhHhhhhhhccceeeeeccccc-ccchhhhhhhhhhhcccccCcccc-
Confidence 9999999997 9999999999999999999999999999999999987755432 356788999999888888844332
Q ss_pred ccCCCCCCCCceeEEEEEEecCCCeEEEEecCCCCCCcceEEEecceEEEEEeCCCcccccceEEeeeeeEEeeeecCCC
Q 002258 708 LTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPL 787 (946)
Q Consensus 708 ~~~~~~~~~~~~~y~~~~~a~~g~~~~~~p~~~~~~~~~~llF~P~~~~~~v~~~~c~~~~~~f~~~~G~~i~G~v~P~l 787 (946)
..+-|. +.+.|+|.+||++||+|+|+|+| |.|||||++++++|+++ |+..+.+|.|++||||+|+|.|||
T Consensus 687 --~~avD~-G~f~yey~twas~gekl~ivPss------k~lLFyP~s~eavvS~d-C~~~a~~f~g~rGLfL~Gsi~Pal 756 (1165)
T KOG1948|consen 687 --VPAVDN-GRFTYEYPTWASSGEKLVIVPSS------KLLLFYPTSKEAVVSGD-CIENAVKFNGFRGLFLDGSIKPAL 756 (1165)
T ss_pred --cccccC-CcceEechhhcCCCceEEEeecc------ceeeecCCceEEEEecc-cchhheeecceeeEEEcceeccCC
Confidence 222222 68999999999999999999998 89999999999999876 999999999999999999999999
Q ss_pred CCeEEEEEecccchhhhccccceeEEEEeCCCceEEeCCCCCCceEEEEeccCCeEEeecC--CCceeEeeeeeEEEEEE
Q 002258 788 SGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG--PNSFSCQKLSQISVRIY 865 (946)
Q Consensus 788 ~gv~I~i~~~~~~~~~~~~~~~~~~~~~T~~~G~f~~gpl~~~~~y~~~A~k~gy~~~~~~--~~~F~a~kL~~i~v~v~ 865 (946)
+||+|+|+.++++ ++.+++.|+.+|.|++|||+++++|+++|+||||+|++.+ +++|+++||++|+|.|+
T Consensus 757 ega~Ikis~kkds--------~~~Iev~T~~~Gafk~GPl~~dl~yd~tA~kegyvft~~~~t~~sfqa~kl~~vsv~vk 828 (1165)
T KOG1948|consen 757 EGAVIKISLKKDS--------DVVIEVITNKDGAFKIGPLKRDLDYDITATKEGYVFTPTSPTPGSFQAVKLSQVSVKVK 828 (1165)
T ss_pred CCcEEEEEecCCC--------ceeEEEEEcCCCcEEecccccccccceeeccCceEEecCCCCccceeeeeeeEEEEEEe
Confidence 9999999999987 7999999999999999999999999999999999999987 49999999999999999
Q ss_pred ecCCCCCcccceEEEEecCCccccccccCCCceEEecccCCCceeeEeeeeeEEEEeec
Q 002258 866 SKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKLGTAACIQ 924 (946)
Q Consensus 866 d~~~~~~pl~gvllsLsg~~~yR~n~~t~~~G~~~f~~L~PG~Y~lr~~~kEy~f~~~~ 924 (946)
|++ ++||+||||||||+++||+|++|++||.++|++|+|||||||||||||+|+|.-
T Consensus 829 dea--~q~LpgvLLSLsGg~~yRsNlvtgdng~~nf~sLsPgqyylRpmlKEykFePst 885 (1165)
T KOG1948|consen 829 DEA--TQPLPGVLLSLSGGKDYRSNLVTGDNGHKNFVSLSPGQYYLRPMLKEYKFEPST 885 (1165)
T ss_pred ccC--CCcCCcEEEEEecCcchhhccccCCCceeEEeecCcchhhhhhHHHhcCcCCCc
Confidence 997 699999999999999999999999999999999999999999999999999974
No 2
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-48 Score=439.70 Aligned_cols=746 Identities=20% Similarity=0.269 Sum_probs=505.1
Q ss_pred CCccccceEEEEEeCCCCEEEEEEeCCCcEEEcCCCCCccEEEEEEcCCCcccCCceeE-EEEcCCCcCCCceeeEEEeC
Q 002258 47 ARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVA-VTVDDTGCNGNEDINFRFTG 125 (946)
Q Consensus 47 ~~i~~sgv~V~L~~~~G~~~~~t~t~~nG~y~ip~l~~G~Y~l~v~~P~G~~~~p~~v~-v~vd~~~~s~~~dinf~~~g 125 (946)
+..+.+||.|+|...++. +.+|.|+++|.|.+....||+|.|++++|. |.+....-+ +.+... +...+-+|.+.|
T Consensus 129 aggGpagV~velrs~e~~-iast~T~~~Gky~f~~iiPG~Yev~ashp~-w~~~~ag~tvvev~~a--~~~va~~f~VsG 204 (1165)
T KOG1948|consen 129 AGGGPAGVLVELRSQEDP-IASTKTEDGGKYEFRNIIPGKYEVSASHPA-WECISAGKTVVEVKNA--PVVVAPNFKVSG 204 (1165)
T ss_pred cCCCcccceeecccccCc-ceeeEecCCCeEEEEecCCCceEEeccCcc-eeEeecCcEEEEeCCC--ccccCCceEEEe
Confidence 345788999999988665 789999999999976558999999999999 988755444 333332 345667899999
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCC----------C------------cEEEEEEeCCCceEEEccccCce
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS----------G------------DLISSVITSSEGSYLFKNIIPGK 183 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~----------g------------~~v~~ttTd~~G~f~f~~l~pG~ 183 (946)
|.+.|+|.+. +.|+.|+.+.|+..+ | ...+.+.+|++|+|+|.+||.|.
T Consensus 205 ydl~gsv~s~---------s~P~~gv~~~l~s~~v~~~dvpkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGk 275 (1165)
T KOG1948|consen 205 YDLEGSVRSE---------SMPFVGVVMTLYSTSVIDLDVPKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGK 275 (1165)
T ss_pred eeeEEEEecc---------CCcccceEEEEEEcccccccCCccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCC
Confidence 9999999885 579999999997543 1 23678999999999999999999
Q ss_pred EEEEEecCCce--EEeecc-EEEEEccCCeeeeeeeeccceEEeEEEee--CCCceeceEEEEEECCCCcccCCCCCCCc
Q 002258 184 YKLRASHPNLS--VEVRGS-TEVELGFENGEVDDIFFAPGYEIRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNA 258 (946)
Q Consensus 184 Y~l~~~~~g~~--~~~~~~-~~v~v~~~~~~v~~~l~v~g~~v~G~V~~--~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~ 258 (946)
|.|.+.+-|.. +.+.|. ..|+|.++.+.+++.|.+.|++++|||+. .|.|++||.|.+...
T Consensus 276 Y~l~a~y~ge~~~fdvSP~~l~v~Vehd~lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvngk-------------- 341 (1165)
T KOG1948|consen 276 YYLAASYVGEPKSFDVSPNPLKVVVEHDHLQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNGK-------------- 341 (1165)
T ss_pred EEEEEEecCCceEEEeCCCceeEEEeccceeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcCc--------------
Confidence 99999987654 334444 78999999999999999999999999995 589999999988765
Q ss_pred cCccceeeEEEecCCceEEECC-cCCeeEEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEEeeEEEeEEEcCCC
Q 002258 259 LGERKALCHAVSDADGKFMFKS-VPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDEND 337 (946)
Q Consensus 259 ~~~g~~~~~~~TD~~G~f~f~~-Lp~G~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~d~~G 337 (946)
-...||++|.|++++ +..|+|+|.+ +.++++|+ .+.+.|..+...+++ +.+.+|.|||+|.-..
T Consensus 342 -------~~~kTdaqGyykLen~~t~gtytI~a--~kehlqFs----tv~~kv~pntasLpd-I~a~~fdiCGqV~~~~- 406 (1165)
T KOG1948|consen 342 -------SGGKTDAQGYYKLENLKTDGTYTITA--KKEHLQFS----TVHAKVKPNTASLPD-ITAQKFDICGQVEKSE- 406 (1165)
T ss_pred -------ccceEcccceEEeeeeeccCcEEEEE--eccceeee----eEEEEecCCcccccc-ccccceeeeeEEEEcc-
Confidence 457899999999999 8899999999 67777776 345677777777875 8888999999996542
Q ss_pred CeeeceEEEE-----ccEEee-EeCCC-ceEEEcccCCceEEEEEEeccceecceeeEEEccCc-------ceeceEEEe
Q 002258 338 MGVEGVKILV-----DGHERS-ITDRD-GYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM-------ASIADIKAI 403 (946)
Q Consensus 338 ~pl~ga~V~l-----~G~~~~-~TD~~-G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~~-------~~i~dI~~~ 403 (946)
-++.+.+ +.+... .|++. |.||| .++||.|+|++.... .+.++++.+.|.. ..+.+|.|+
T Consensus 407 ---k~~nv~lt~~~s~~k~s~~~t~etdGsfCf-~vppG~ytievl~~t--a~~aagl~l~P~~~~veV~~~pv~ni~Fs 480 (1165)
T KOG1948|consen 407 ---KGVNVKLTFTRSDDKRSLEITPETDGSFCF-PVPPGLYTIEVLDKT--ASGAAGLLLTPRLLEVEVLKNPVTNIRFS 480 (1165)
T ss_pred ---ccceeEEEEccCccccccccccccCCceeE-EcCCccEEEEEeccC--cccccccEeeeeeeeEEeecCcccceehh
Confidence 2344443 333332 44443 99999 999999999987654 2222234444433 245589998
Q ss_pred ee--EEEEEEEEcCCcccEEEEEEeC-CCccc-ceeeeeCCceEEEEE-EcCeeEEEEEEeeCCCCCCceEEcCCeEEEE
Q 002258 404 SY--DICGVVRTVGSGNKVKVALTHG-PDKVK-PQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVV 478 (946)
Q Consensus 404 ~~--~v~G~V~~~~~~~~a~VtL~~~-~~~~~-~~~~~Td~~G~F~f~-l~pG~Y~v~~~~~~~e~~~G~~~~p~~~~V~ 478 (946)
++ +++|.|.|...|+.+.|+|... .+... .....+|+.+.|.|+ +.||+|++++... ..|||...+++++
T Consensus 481 qfranv~g~lsCl~tCg~a~vtlq~la~Gq~~~~~vk~td~~~~ftF~nilPGkY~~~i~d~-----~~wCwe~ss~~ln 555 (1165)
T KOG1948|consen 481 QFRANVNGHLSCLGTCGTATVTLQLLAAGQTLVRSVKGTDESSVFTFENILPGKYSARIDDN-----GRWCWEKSSMTLN 555 (1165)
T ss_pred hhhhccceEEEeccCCCceeEEEEecccCCcceeeEEEEeeccEEEeeccCCcceEEEeccC-----CCceeecceEEEE
Confidence 87 9999999999999999999632 23222 345678999999999 9999999999841 2699999999999
Q ss_pred E-cCcccceEEEEeeeEEEEEEEeccCCCCceEEEEEEcCcccccCCcceeEEEeeCCccEEEcccCCccEEEEEEeecc
Q 002258 479 V-KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSR 557 (946)
Q Consensus 479 V-~~pv~~i~F~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~t~~~G~f~f~~v~PG~Y~v~v~~~~~ 557 (946)
| .+++..|.|.|.+++++ |..+|.+++.....++ -......+++..+-.+||++. ||.|-+...
T Consensus 556 V~~~d~~aieFvqkGy~~~--------iisSH~a~~e~~h~dg-~~en~~~lki~kgvn~iCv~k--pGs~~~~~~---- 620 (1165)
T KOG1948|consen 556 VEQSDTQAIEFVQKGYAAQ--------IISSHPAEIEWSHADG-KQENGKTLKIGKGVNSICVPK--PGSYDVSLG---- 620 (1165)
T ss_pred eecccccccceeeccEEEE--------EEecCceeeEEecCCC-CCCCcceEEecCcceEEEccC--Cccceeecc----
Confidence 9 57788999999999998 5557888887665432 022345678888899999999 999998875
Q ss_pred ccccCCCCeeEeeeeEEEEeecCcc---ccceEEEeeeEEEEEecce-eeE------EEEeeCCCeee-----EEecccc
Q 002258 558 EASSMEDNWCWEQSFIGVDVGTNDV---KGVEFVQKGYWLNVISTHD-VDA------YMTQQDGSHVP-----LKVKKGS 622 (946)
Q Consensus 558 ~~~~~~~~~cw~~~~~~v~V~~~~~---~~i~f~q~Gy~~~i~~sh~-~~~------~~~~~~~~~~~-----~~l~~G~ 622 (946)
.|+-|+.++..++|..+.+ .++--.-+|-.....++.. ... ++.+-.++.++ ..+-.|.
T Consensus 621 ------sc~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~~s~~~k~v~e~~~~k~evit~~a~~~avD~G~ 694 (1165)
T KOG1948|consen 621 ------SCYTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAAVSIREKFVVEIQDIKSEVITREAQVPAVDNGR 694 (1165)
T ss_pred ------ceeecccCCceeecCCCcchHhHhhhhhhccceeeeecccccccchhhhhhhhhhhcccccCcccccccccCCc
Confidence 6899999999999875431 2222222232222222222 111 11111111100 1111122
Q ss_pred eeEE---ecCCce-eEEEecCCceecCCCceEEeCCCCce---eEEEEEEEE-EEEEEEEeecCCCccccCCcceEEEEe
Q 002258 623 QHIC---VESPGV-HNLHFVNPCVFFGSPVLKMDTSNPSP---IYLKGEKYQ-LRGHINVQSRSPIGVHELPENIIVDIL 694 (946)
Q Consensus 623 ~~~c---v~~~G~-y~~~~~~sC~~f~~~~~~~~t~~~~~---i~l~a~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~~~ 694 (946)
..+- .-++|. -.|+|+.--.-|.+++...-.+.+++ +.+++.+.+ +.|+|. |. + +++.+++.
T Consensus 695 f~yey~twas~gekl~ivPssk~lLFyP~s~eavvS~dC~~~a~~f~g~rGLfL~Gsi~------Pa---l-ega~Ikis 764 (1165)
T KOG1948|consen 695 FTYEYPTWASSGEKLVIVPSSKLLLFYPTSKEAVVSGDCIENAVKFNGFRGLFLDGSIK------PA---L-EGAVIKIS 764 (1165)
T ss_pred ceEechhhcCCCceEEEeeccceeeecCCceEEEEecccchhheeecceeeEEEcceec------cC---C-CCcEEEEE
Confidence 1111 113343 44555333334777766666666654 345555554 456663 21 1 34444443
Q ss_pred cCCCceeccccccccCCCCCCCCceeEEEEEEecCCCeEEEEecCCCCCCcceEEEecceEEEEEeCCCcccccceEEee
Q 002258 695 NGDGSISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGR 774 (946)
Q Consensus 695 ~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~a~~g~~~~~~p~~~~~~~~~~llF~P~~~~~~v~~~~c~~~~~~f~~~ 774 (946)
.++...+- -..+. +..+.|.+-.. .....++++..- +-..|.|.+... .+|+..- -+.
T Consensus 765 ~kkds~~~--Iev~T------~~~Gafk~GPl-~~dl~yd~tA~k------egyvft~~~~t~----~sfqa~k---l~~ 822 (1165)
T KOG1948|consen 765 LKKDSDVV--IEVIT------NKDGAFKIGPL-KRDLDYDITATK------EGYVFTPTSPTP----GSFQAVK---LSQ 822 (1165)
T ss_pred ecCCCcee--EEEEE------cCCCcEEeccc-ccccccceeecc------CceEEecCCCCc----cceeeee---eeE
Confidence 22222110 00000 01122222111 011222333322 122332222110 0122200 011
Q ss_pred eeeEEeeeecCCCCCeEEEEEecccchhhhccccceeEEEEeCCCceEEeCCCCCCceEEEEeccCCeEEeecC------
Q 002258 775 LGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG------ 848 (946)
Q Consensus 775 ~G~~i~G~v~P~l~gv~I~i~~~~~~~~~~~~~~~~~~~~~T~~~G~f~~gpl~~~~~y~~~A~k~gy~~~~~~------ 848 (946)
.-+-+.....-||+||-..|+- +. +-+-..+|+++|.+.|-.|.+ .+|.+.+-..-|.|++..
T Consensus 823 vsv~vkdea~q~LpgvLLSLsG--g~--------~yRsNlvtgdng~~nf~sLsP-gqyylRpmlKEykFePst~mIevk 891 (1165)
T KOG1948|consen 823 VSVKVKDEATQPLPGVLLSLSG--GK--------DYRSNLVTGDNGHKNFVSLSP-GQYYLRPMLKEYKFEPSTSMIEVK 891 (1165)
T ss_pred EEEEEeccCCCcCCcEEEEEec--Cc--------chhhccccCCCceeEEeecCc-chhhhhhHHHhcCcCCCceeEEec
Confidence 1223445555789999888863 21 345577999999999999999 899999988889999731
Q ss_pred -----CCceeEeeee-eEEEEEEecCCCCCcccceEEE-EecC-CccccccccCCCceEEecccCCCceee
Q 002258 849 -----PNSFSCQKLS-QISVRIYSKDDAGEPIPSVLLS-LSGD-DGYRNNSVSWAGGSFHFDNLFPGNFYL 911 (946)
Q Consensus 849 -----~~~F~a~kL~-~i~v~v~d~~~~~~pl~gvlls-Lsg~-~~yR~n~~t~~~G~~~f~~L~PG~Y~l 911 (946)
+..|.+.+.+ ++=-+|..- +|+|..||-+- +|.+ +.|-.-..|++||++.+..|-||-=|.
T Consensus 892 eGq~~~vvl~gkRvAySayGtvssL--sGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~ 960 (1165)
T KOG1948|consen 892 EGQHENVVLKGKRVAYSAYGTVSSL--SGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQ 960 (1165)
T ss_pred cCceEEEEEEEEEEEEEeeeehhhc--cCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEE
Confidence 1457777765 555666544 49999999998 5555 478888999999999999999996554
No 3
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=7e-26 Score=269.03 Aligned_cols=409 Identities=17% Similarity=0.268 Sum_probs=290.8
Q ss_pred cccccccCCCCccccceEEEEEeCCCCEEEEE-EeCCCcEEEcCCCCCccEEE-EEEcCCCcccC-CceeEEEEcCCCcC
Q 002258 38 LIKSRKATDARLDYSHVTVELRTLDGLVKEST-QCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWN-PDKVAVTVDDTGCN 114 (946)
Q Consensus 38 ~~~~~~~~d~~i~~sgv~V~L~~~~G~~~~~t-~t~~nG~y~ip~l~~G~Y~l-~v~~P~G~~~~-p~~v~v~vd~~~~s 114 (946)
+.|..| .+..-.++|++++||+..|....+. +|+.+|.+.+..|.-|+|.| +.++|.||... -.+.+++|+..
T Consensus 973 iTKvDk-a~~~k~LeGA~F~Lyd~~Ge~~~reitT~~dGkl~~~nL~~~dY~LiETkAPtGY~l~~~dgkeiTI~~s--- 1048 (1531)
T COG4932 973 ITKVDK-ADTGKKLEGAKFQLYDSEGEKLGREITTDEDGKLTFDNLQYGDYKLIETKAPTGYTLDYKDGKEITISAS--- 1048 (1531)
T ss_pred EeccCc-ccccccccccEEEEEecCCceeeeeeeecccceeeecccccceeEEEEccCCcceeeccCcccEEEEecC---
Confidence 444444 3334458999999999999876665 67779999999999999998 78899999987 55566666542
Q ss_pred CCceeeEEEeCcEEEeEE-EeccCCccccCCCCCCcceEEEEEeCCCcEEEE-EEeCCCceEEEccccCceEEEEEec--
Q 002258 115 GNEDINFRFTGFTLLGRV-VGAIGGESCLDKGGGPSNVNVELLSHSGDLISS-VITSSEGSYLFKNIIPGKYKLRASH-- 190 (946)
Q Consensus 115 ~~~dinf~~~g~~IsG~V-~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~-ttTd~~G~f~f~~l~pG~Y~l~~~~-- 190 (946)
+..+-.....-...|.| +.+. |+++++-|+||.++|.+.+|..+++ .+||++|.-.+.+|.||+|.+.+.+
T Consensus 1049 -g~Ei~vtkeN~~~~g~V~L~K~----D~at~~~LaGA~FeLQdk~G~~l~enL~TD~~G~v~itdLaPGDYqfVEtkAP 1123 (1531)
T COG4932 1049 -GKEIFVTKENEAKKGSVQLTKK----DSATGATLAGAEFELQDKDGNTLQENLTTDEDGKVEITDLAPGDYQFVETKAP 1123 (1531)
T ss_pred -CceeEEeecccccccceeEEEe----cccccccccCceEEEeeccCcchhhhccccccCcEEeccccCCceeeEEecCC
Confidence 33333333344445554 2221 2347899999999999999977776 8999999999999999999998854
Q ss_pred CCceEEeeccEEEEEccCCee---e-eeeeeccceEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCCccCcccee
Q 002258 191 PNLSVEVRGSTEVELGFENGE---V-DDIFFAPGYEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKAL 265 (946)
Q Consensus 191 ~g~~~~~~~~~~v~v~~~~~~---v-~~~l~v~g~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~ 265 (946)
.||.+... ...|++...... + ......+|...--+|.+ .+.+|+||+|.|.+.+++.+ .
T Consensus 1124 tGY~Ldat-PV~FtI~eeq~e~~~vtKeN~~~~GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~V---------------q 1187 (1531)
T COG4932 1124 TGYILDAT-PVNFTISEEQDEAAKVTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTLV---------------Q 1187 (1531)
T ss_pred ceeEecCc-cceeEeeccCCceeEEeecccccccceEEEEecccccccccCcEEEEEcCCCcEe---------------e
Confidence 48988733 356666633322 1 11222233222223333 48999999999999987643 3
Q ss_pred eEEEecCCceEEECCcCCeeEEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEEeeEEEeEEE----c-CCCCee
Q 002258 266 CHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVV----D-ENDMGV 340 (946)
Q Consensus 266 ~~~~TD~~G~f~f~~Lp~G~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~----d-~~G~pl 340 (946)
...+||++|+..+.+|.||+|.+.+......+.++..|.. |++..++.... ......-.+.|.|+ | ..+..+
T Consensus 1188 egLtTD~nG~i~VtdL~PGdYqFVETkAP~GY~LdatP~~--FtI~~~q~ev~-~V~~en~~~pgsv~L~k~d~~~~~~l 1264 (1531)
T COG4932 1188 EGLTTDENGKINVTDLAPGDYQFVETKAPTGYILDATPTP--FTIEFNQEEVV-KVVKENTAIPGSVVLTKKDSDTGAAL 1264 (1531)
T ss_pred ccceecCCCcEEecccCCcceeeeeecCCcceeeccccce--eEEecccccee-EEeeccccCCCCceeeccCCCccccc
Confidence 5679999999999999999999999877767777766654 66655443221 12223345667665 3 268889
Q ss_pred eceEEEE---ccEEe---eEeCCCceEEEcccCCceEEEEEEe--ccceecceeeEEEcc--CcceeceEEEeeeEEEEE
Q 002258 341 EGVKILV---DGHER---SITDRDGYYKLDQVTSNRYTIEAVK--VHYKFNKLKEYMVLP--NMASIADIKAISYDICGV 410 (946)
Q Consensus 341 ~ga~V~l---~G~~~---~~TD~~G~f~~~~L~pG~Y~I~a~~--~~y~~~~~~~v~v~p--~~~~i~dI~~~~~~v~G~ 410 (946)
+||.+.| +|..+ .+||+.|.....+|.||.|+.-..+ .||..+..+ +.++. +......+...+-.+.|.
T Consensus 1265 ~~a~fkl~~~eg~~vqe~L~td~~Gei~v~dlkpGdyqfVETkAp~Gy~L~a~p-v~ftI~~~q~e~~kV~~~n~~~~gs 1343 (1531)
T COG4932 1265 SGAEFKLLDAEGTTVQEGLTTDETGEIVVADLKPGDYQFVETKAPEGYILDATP-VNFTIEFNQEEAVKVTKENDAKTGS 1343 (1531)
T ss_pred CCCceeeecCCCcEeccCceecCCCcEEecccCCCcccceEccCCcceEEeecc-eeEEEEecccccEEEEEeecccccc
Confidence 9999998 55544 4999999999999999999975443 457666552 33332 222333455555567777
Q ss_pred EEEcC-------CcccEEEEEEeCCCcccceeeeeCCceEEEEE-EcCeeEEEEEEeeCCCCCCceEEcCCeEEEEE
Q 002258 411 VRTVG-------SGNKVKVALTHGPDKVKPQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVV 479 (946)
Q Consensus 411 V~~~~-------~~~~a~VtL~~~~~~~~~~~~~Td~~G~F~f~-l~pG~Y~v~~~~~~~e~~~G~~~~p~~~~V~V 479 (946)
|...+ ...+|...|.+..++......+||++|...+. |+||.|++.+++. +.||.+....+++++
T Consensus 1344 v~l~k~d~~~~~~LegA~F~l~de~g~ilke~l~t~~nG~l~v~dLaPGdYqfvETkA----PtgY~Ld~tpv~FTI 1416 (1531)
T COG4932 1344 VVLTKLDSSSGVTLEGAEFELLDEEGNILKEGLVTDENGQLLVDDLAPGDYQFVETKA----PTGYELDATPVDFTI 1416 (1531)
T ss_pred EEEEEeecccCccccCcEEEEEcccCceehhcceeCCCCcEEEeecCCCceeeEEccC----CcceeccCCceEEEE
Confidence 76432 23567777777777665677899999999999 9999999999874 359999888888877
No 4
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.3e-22 Score=241.44 Aligned_cols=399 Identities=17% Similarity=0.269 Sum_probs=275.8
Q ss_pred CCCCCcceEEEEEeCCCcE-EEEEEeCCCceEEEccccCceEEEEEec--CCceEEeeccEEEEEccCCeeeeeeeeccc
Q 002258 144 KGGGPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFENGEVDDIFFAPG 220 (946)
Q Consensus 144 ~g~plaGv~V~L~~~~g~~-v~~ttTd~~G~f~f~~l~pG~Y~l~~~~--~g~~~~~~~~~~v~v~~~~~~v~~~l~v~g 220 (946)
.+..++|+.+.|++..|+. .+..+||++|...|.+|.-|+|.|.+++ .||.+.......++|......+ .+....
T Consensus 981 ~~k~LeGA~F~Lyd~~Ge~~~reitT~~dGkl~~~nL~~~dY~LiETkAPtGY~l~~~dgkeiTI~~sg~Ei--~vtkeN 1058 (1531)
T COG4932 981 TGKKLEGAKFQLYDSEGEKLGREITTDEDGKLTFDNLQYGDYKLIETKAPTGYTLDYKDGKEITISASGKEI--FVTKEN 1058 (1531)
T ss_pred ccccccccEEEEEecCCceeeeeeeecccceeeecccccceeEEEEccCCcceeeccCcccEEEEecCCcee--EEeecc
Confidence 4789999999999998854 6789999999999999999999999865 4887663333566666543321 011111
Q ss_pred eEEeEE-----Eee-CCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEEEEEcC
Q 002258 221 YEIRGL-----VVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKG 294 (946)
Q Consensus 221 ~~v~G~-----V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~~~~~ 294 (946)
-...|. +.+ .|+-|+||.|.|.+.++..+ ....+||++|...+.+|.||+|++++....
T Consensus 1059 ~~~~g~V~L~K~D~at~~~LaGA~FeLQdk~G~~l---------------~enL~TD~~G~v~itdLaPGDYqfVEtkAP 1123 (1531)
T COG4932 1059 EAKKGSVQLTKKDSATGATLAGAEFELQDKDGNTL---------------QENLTTDEDGKVEITDLAPGDYQFVETKAP 1123 (1531)
T ss_pred cccccceeEEEecccccccccCceEEEeeccCcch---------------hhhccccccCcEEeccccCCceeeEEecCC
Confidence 112232 222 49999999999999976432 245899999999999999999999997666
Q ss_pred CceEEEecCceEEEEEeccceeeeceeEEEeeEEEeEE----EcC-CCCeeeceEEEE---ccEEe---eEeCCCceEEE
Q 002258 295 ENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRV----VDE-NDMGVEGVKILV---DGHER---SITDRDGYYKL 363 (946)
Q Consensus 295 ~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V----~d~-~G~pl~ga~V~l---~G~~~---~~TD~~G~f~~ 363 (946)
.++.+|-.|.. |++...+-.. ...........|.| +|+ .+.+|+||.+.| +|+.+ .+||++|...+
T Consensus 1124 tGY~LdatPV~--FtI~eeq~e~-~~vtKeN~~~~GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~V 1200 (1531)
T COG4932 1124 TGYILDATPVN--FTISEEQDEA-AKVTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTLVQEGLTTDENGKINV 1200 (1531)
T ss_pred ceeEecCccce--eEeeccCCce-eEEeecccccccceEEEEecccccccccCcEEEEEcCCCcEeeccceecCCCcEEe
Confidence 66666666654 5554221111 01222222344444 465 789999999999 67766 49999999999
Q ss_pred cccCCceEEEEEEe--ccceeccee-eEEEccCcceeceEEEeeeEEEEEEEEcCC-------cccEEEEEEeCCCcccc
Q 002258 364 DQVTSNRYTIEAVK--VHYKFNKLK-EYMVLPNMASIADIKAISYDICGVVRTVGS-------GNKVKVALTHGPDKVKP 433 (946)
Q Consensus 364 ~~L~pG~Y~I~a~~--~~y~~~~~~-~v~v~p~~~~i~dI~~~~~~v~G~V~~~~~-------~~~a~VtL~~~~~~~~~ 433 (946)
.+|.||+|++-..+ .+|..+..+ .+.+.-++.++.-|+.+...+.|+|...+. .+.|...|.+..+....
T Consensus 1201 tdL~PGdYqFVETkAP~GY~LdatP~~FtI~~~q~ev~~V~~en~~~pgsv~L~k~d~~~~~~l~~a~fkl~~~eg~~vq 1280 (1531)
T COG4932 1201 TDLAPGDYQFVETKAPTGYILDATPTPFTIEFNQEEVVKVVKENTAIPGSVVLTKKDSDTGAALSGAEFKLLDAEGTTVQ 1280 (1531)
T ss_pred cccCCcceeeeeecCCcceeeccccceeEEeccccceeEEeeccccCCCCceeeccCCCcccccCCCceeeecCCCcEec
Confidence 99999999975543 357666542 244444445555566666677888875432 24556666666655444
Q ss_pred eeeeeCCceEEEEE-EcCeeEEEEEEeeCCCCCCceEEcCCeEEEEEc-CcccceEEEEeeeEEEEEEEecc--C----C
Q 002258 434 QVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVK-SPLLNIEFSQALVNVLGNVACKE--R----C 505 (946)
Q Consensus 434 ~~~~Td~~G~F~f~-l~pG~Y~v~~~~~~~e~~~G~~~~p~~~~V~V~-~pv~~i~F~q~~a~V~G~V~~~~--~----~ 505 (946)
...+||++|..... |.||.|++.+++. +.||.+...++.+++. +....+......-.+.|.|.... . .
T Consensus 1281 e~L~td~~Gei~v~dlkpGdyqfVETkA----p~Gy~L~a~pv~ftI~~~q~e~~kV~~~n~~~~gsv~l~k~d~~~~~~ 1356 (1531)
T COG4932 1281 EGLTTDETGEIVVADLKPGDYQFVETKA----PEGYILDATPVNFTIEFNQEEAVKVTKENDAKTGSVVLTKLDSSSGVT 1356 (1531)
T ss_pred cCceecCCCcEEecccCCCcccceEccC----CcceEEeecceeEEEEecccccEEEEEeeccccccEEEEEeecccCcc
Confidence 67789999999999 9999999998874 2489888887777773 22222222222223445555432 1 1
Q ss_pred CCceEEEEEEcCcccccCCcceeEEEeeCCccEEEcccCCccEEEEEEeeccccccCCCCeeEeeeeEEEEee
Q 002258 506 GPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVG 578 (946)
Q Consensus 506 ~~~~~VtL~~~~~~~~~~~~~~~~~~t~~~G~f~f~~v~PG~Y~v~v~~~~~~~~~~~~~~cw~~~~~~v~V~ 578 (946)
..++.+.|+...+. ..+.--.++++|+..+.||+||.|.+...++ +..+-.+.+.+++++.
T Consensus 1357 LegA~F~l~de~g~-----ilke~l~t~~nG~l~v~dLaPGdYqfvETkA-------PtgY~Ld~tpv~FTIe 1417 (1531)
T COG4932 1357 LEGAEFELLDEEGN-----ILKEGLVTDENGQLLVDDLAPGDYQFVETKA-------PTGYELDATPVDFTIE 1417 (1531)
T ss_pred ccCcEEEEEcccCc-----eehhcceeCCCCcEEEeecCCCceeeEEccC-------CcceeccCCceEEEEE
Confidence 23678888766553 1121223899999999999999999999865 6788999999988854
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.93 E-value=3.5e-09 Score=94.20 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=53.8
Q ss_pred EEEeEEEcCCCCeeeceEEEEc----cEE-eeEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEccCcceeceEE
Q 002258 327 SVGGRVVDENDMGVEGVKILVD----GHE-RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIK 401 (946)
Q Consensus 327 sV~G~V~d~~G~pl~ga~V~l~----G~~-~~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~~~~i~dI~ 401 (946)
+|+|+|+|++|+||+||.|.|. +.. .+.||++|+|.|.+|+||+|+|++.+++|.......+.+.++...-.+|.
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~~i~ 80 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTTTVDIT 80 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEEE--EE
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEEEEEEE
Confidence 5899999999999999999992 222 26999999999999999999999999998766553467776543333444
No 6
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.90 E-value=4.3e-09 Score=93.61 Aligned_cols=74 Identities=27% Similarity=0.465 Sum_probs=56.0
Q ss_pred EEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEEc
Q 002258 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (946)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v~ 206 (946)
+|+|+|.+. +|.|++||+|.|.+.++....+++||++|+|+|.+|+||+|.|.+.++||.... ...+.+.
T Consensus 1 tI~G~V~d~--------~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~--~~~v~v~ 70 (82)
T PF13620_consen 1 TISGTVTDA--------TGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQT--QENVTVT 70 (82)
T ss_dssp -EEEEEEET--------TSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EE--EEEEEES
T ss_pred CEEEEEEcC--------CCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEE--EEEEEEe
Confidence 589999986 379999999999987777788999999999999999999999999999998652 1257776
Q ss_pred cCCe
Q 002258 207 FENG 210 (946)
Q Consensus 207 ~~~~ 210 (946)
.+..
T Consensus 71 ~~~~ 74 (82)
T PF13620_consen 71 AGQT 74 (82)
T ss_dssp SSSE
T ss_pred CCCE
Confidence 6544
No 7
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.27 E-value=4.3e-06 Score=75.43 Aligned_cols=58 Identities=19% Similarity=0.530 Sum_probs=50.4
Q ss_pred EEEeEEEcCC-CCeeeceEEEE-ccEEeeEeCCCceEEEcccCCceEEEEEEeccceecce
Q 002258 327 SVGGRVVDEN-DMGVEGVKILV-DGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 385 (946)
Q Consensus 327 sV~G~V~d~~-G~pl~ga~V~l-~G~~~~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~ 385 (946)
+|+|+|+|.. +.||++|.|.+ +....+.||++|+|.|. +++|.|+|.++..+|.....
T Consensus 1 ti~G~V~d~~t~~pl~~a~V~~~~~~~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~~~ 60 (88)
T PF13715_consen 1 TISGKVVDSDTGEPLPGATVYLKNTKKGTVTDENGRFSIK-LPEGDYTLKISYIGYETKTI 60 (88)
T ss_pred CEEEEEEECCCCCCccCeEEEEeCCcceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEEEE
Confidence 4799999995 99999999999 44456799999999997 99999999999999765543
No 8
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=98.24 E-value=1.7e-06 Score=74.61 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=52.8
Q ss_pred ccceEEEEEeCCCCEEEE--EEeCCCcEEEcCCCCCccEEE-EEEcCCCcccCCceeEEEEcCC
Q 002258 51 YSHVTVELRTLDGLVKES--TQCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWNPDKVAVTVDDT 111 (946)
Q Consensus 51 ~sgv~V~L~~~~G~~~~~--t~t~~nG~y~ip~l~~G~Y~l-~v~~P~G~~~~p~~v~v~vd~~ 111 (946)
|+||+|+|++.++..... ..|+.+|.|.+..|++|.|.| +..+|.||...+....+.+..+
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~ 64 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITED 64 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTT
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecC
Confidence 579999999999988776 788999999999999999999 4667999999988887777654
No 9
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.24 E-value=9.6e-06 Score=73.13 Aligned_cols=58 Identities=24% Similarity=0.372 Sum_probs=50.9
Q ss_pred EEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEE
Q 002258 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (946)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~ 196 (946)
+|+|+|++.. ++.|++||+|.+.+.+ ..+.||++|+|+|. +++|.|.|.+++.||...
T Consensus 1 ti~G~V~d~~-------t~~pl~~a~V~~~~~~----~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~ 58 (88)
T PF13715_consen 1 TISGKVVDSD-------TGEPLPGATVYLKNTK----KGTVTDENGRFSIK-LPEGDYTLKISYIGYETK 58 (88)
T ss_pred CEEEEEEECC-------CCCCccCeEEEEeCCc----ceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEE
Confidence 4899999862 4799999999998543 57899999999999 999999999999999855
No 10
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=98.18 E-value=7.6e-06 Score=70.50 Aligned_cols=61 Identities=25% Similarity=0.480 Sum_probs=48.8
Q ss_pred CcceEEEEEeCCCcEEEE--EEeCCCceEEEccccCceEEEEEec--CCceEEeeccEEEEEccCC
Q 002258 148 PSNVNVELLSHSGDLISS--VITSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFEN 209 (946)
Q Consensus 148 laGv~V~L~~~~g~~v~~--ttTd~~G~f~f~~l~pG~Y~l~~~~--~g~~~~~~~~~~v~v~~~~ 209 (946)
|+||+|+|++.++..... .+||++|.|.|.+|+||+|.|.+.. +||... .....+.+..++
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~-~~~~~~~i~~~~ 65 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLD-DTPYEFTITEDG 65 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEE-ECEEEEEECTTS
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEEC-CCceEEEEecCC
Confidence 689999999999876665 9999999999999999999999865 578766 333556665544
No 11
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.99 E-value=1.7e-05 Score=90.49 Aligned_cols=75 Identities=21% Similarity=0.189 Sum_probs=60.3
Q ss_pred eEEEeEEEcC-CCCeeeceEEEEccEEe-eEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEccCcceeceEEE
Q 002258 326 FSVGGRVVDE-NDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKA 402 (946)
Q Consensus 326 ~sV~G~V~d~-~G~pl~ga~V~l~G~~~-~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~~~~i~dI~~ 402 (946)
..|.|+|+|. +|+||+||+|.|.|... ++||.+|.|.+ .|+||+|+|+++..+|..... .+.+.++.....++.+
T Consensus 297 ~gI~G~V~D~~~g~pl~~AtV~V~g~~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~~~~~-~v~V~~~~~~~~~~~L 373 (375)
T cd03863 297 RGVRGFVLDATDGRGILNATISVADINHPVTTYKDGDYWR-LLVPGTYKVTASARGYDPVTK-TVEVDSKGAVQVNFTL 373 (375)
T ss_pred CeEEEEEEeCCCCCCCCCeEEEEecCcCceEECCCccEEE-ccCCeeEEEEEEEcCcccEEE-EEEEcCCCcEEEEEEe
Confidence 4799999997 79999999999976543 69999999999 799999999999999876665 4666665443334443
No 12
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.98 E-value=2.9e-05 Score=67.48 Aligned_cols=58 Identities=31% Similarity=0.509 Sum_probs=52.2
Q ss_pred EEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCce
Q 002258 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLS 194 (946)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~ 194 (946)
.|+|+|+.. |+|++|+-|+|+|.+|+...+..|+++|.|+|. ..||+++|++.+++-.
T Consensus 9 VItG~V~~~---------G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFf-aapG~WtvRal~~~g~ 66 (85)
T PF07210_consen 9 VITGRVTRD---------GEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFF-AAPGSWTVRALSRGGN 66 (85)
T ss_pred EEEEEEecC---------CcCCCCeEEEEEcCCCCeEEEEEecCCccEEEE-eCCCceEEEEEccCCC
Confidence 489999942 699999999999999999999999999999999 8999999999877543
No 13
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.86 E-value=4.4e-05 Score=86.94 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=56.4
Q ss_pred eEEEeEEEcCCCCeeeceEEEEccEEeeEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEccCc
Q 002258 326 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 394 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l~G~~~~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~~ 394 (946)
..|+|+|+|.+|+||+||+|.+.|...++||.+|.|.+. |+||+|+|+++..+|..... .+.+..+.
T Consensus 287 ~gI~G~V~d~~g~pi~~A~V~v~g~~~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~~~~~-~V~v~~~~ 353 (363)
T cd06245 287 KGVHGVVTDKAGKPISGATIVLNGGHRVYTKEGGYFHVL-LAPGQHNINVIAEGYQQEHL-PVVVSHDE 353 (363)
T ss_pred cEEEEEEEcCCCCCccceEEEEeCCCceEeCCCcEEEEe-cCCceEEEEEEEeCceeEEE-EEEEcCCC
Confidence 479999999999999999999966545689999999995 99999999999999876554 35555543
No 14
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.83 E-value=4.5e-05 Score=87.35 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=57.9
Q ss_pred EEEeEEEcCCCCeeeceEEEEccEEe-eEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEccCcceeceE
Q 002258 327 SVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADI 400 (946)
Q Consensus 327 sV~G~V~d~~G~pl~ga~V~l~G~~~-~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~~~~i~dI 400 (946)
.|.|+|.|..|.||++|+|.+.|... .+||.+|.|.+ .|+||+|+|++++.+|..... .+.+..+.....|+
T Consensus 327 gI~G~V~D~~g~pI~~AtV~V~g~~~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~~~~~-~V~V~~~~~~~vdf 399 (402)
T cd03865 327 GVKGFVKDLQGNPIANATISVEGIDHDITSAKDGDYWR-LLAPGNYKLTASAPGYLAVVK-KVAVPYSPAVRVDF 399 (402)
T ss_pred ceEEEEECCCCCcCCCeEEEEEcCccccEECCCeeEEE-CCCCEEEEEEEEecCcccEEE-EEEEcCCCcEEEeE
Confidence 49999999989999999999966543 58999999998 999999999999999876543 56665544333343
No 15
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.81 E-value=5.2e-05 Score=86.97 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=56.6
Q ss_pred eEEEeEEEcCCCCeeeceEEEEccEEe-eEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEccCc
Q 002258 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 394 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l~G~~~-~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~~ 394 (946)
..|.|+|.|.+|.||++|+|.+.|... ++||.+|.| +..|+||+|+|++++.+|..... .+.+....
T Consensus 316 ~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~t~-~v~V~~~~ 383 (392)
T cd03864 316 QGIKGMVTDENNNGIANAVISVSGISHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPSTV-TVTVGPAE 383 (392)
T ss_pred CeEEEEEECCCCCccCCeEEEEECCccceEECCCCcE-EecCCCeeEEEEEEEcCceeEEE-EEEEcCCC
Confidence 479999999999999999999977544 689999999 88999999999999999876655 35665543
No 16
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.65 E-value=0.00011 Score=84.47 Aligned_cols=67 Identities=27% Similarity=0.327 Sum_probs=54.9
Q ss_pred eEEEeEEEcCCCCeeeceEEEEccE-EeeEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEccC
Q 002258 326 FSVGGRVVDENDMGVEGVKILVDGH-ERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPN 393 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l~G~-~~~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~ 393 (946)
..|.|+|.|.+|+|++||+|.+.+. ..++||++|.|.. .|+||+|+|+++..+|.......+.+..+
T Consensus 296 ~~i~G~V~d~~g~pv~~A~V~v~~~~~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~g 363 (372)
T cd03868 296 IGVKGFVRDASGNPIEDATIMVAGIDHNVTTAKFGDYWR-LLLPGTYTITAVAPGYEPSTVTDVVVKEG 363 (372)
T ss_pred CceEEEEEcCCCCcCCCcEEEEEecccceEeCCCceEEe-cCCCEEEEEEEEecCCCceEEeeEEEcCC
Confidence 4799999999999999999999554 3369999999985 89999999999999976655544445444
No 17
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.60 E-value=0.00028 Score=61.49 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=48.9
Q ss_pred EEeEEEeeCCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEEEEEcCC
Q 002258 222 EIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGE 295 (946)
Q Consensus 222 ~v~G~V~~~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~~~~~~ 295 (946)
.|+|+|+.+|+|++||.|+|.+.++ +......|.++|.|+|- -.||+++|++..++.
T Consensus 9 VItG~V~~~G~Pv~gAyVRLLD~sg----------------EFtaEvvts~~G~FRFf-aapG~WtvRal~~~g 65 (85)
T PF07210_consen 9 VITGRVTRDGEPVGGAYVRLLDSSG----------------EFTAEVVTSATGDFRFF-AAPGSWTVRALSRGG 65 (85)
T ss_pred EEEEEEecCCcCCCCeEEEEEcCCC----------------CeEEEEEecCCccEEEE-eCCCceEEEEEccCC
Confidence 5799999999999999999998854 35688999999999996 778999999965544
No 18
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.57 E-value=0.00037 Score=67.18 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=51.6
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCC------cEEEEEEeCCCceEEEccccCceEEEEEecCCceEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG------DLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g------~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~ 196 (946)
..|+|...+. .|.|++|++|+|..... ..+.+..||++|.|+|+ +.||.|.|.....||...
T Consensus 3 V~ISGvL~dg--------~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~~~ 70 (134)
T PF08400_consen 3 VKISGVLKDG--------AGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRPPV 70 (134)
T ss_pred EEEEEEEeCC--------CCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCCce
Confidence 4688977763 48999999999986543 34678899999999999 999999999999988654
No 19
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.55 E-value=0.00028 Score=67.96 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=51.6
Q ss_pred eeEEEeEEEcCCCCeeeceEEEE----ccEEe-------eEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEcc
Q 002258 325 GFSVGGRVVDENDMGVEGVKILV----DGHER-------SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (946)
Q Consensus 325 g~sV~G~V~d~~G~pl~ga~V~l----~G~~~-------~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p 392 (946)
...|+|...|+.|+|++|+.|.| +-..+ ..||++|+|.| ++.||.|.|.+..+++.+.-.-.+.+.+
T Consensus 2 sV~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~-~~epG~Y~V~l~~~g~~~~~vG~I~V~~ 79 (134)
T PF08400_consen 2 SVKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSF-DVEPGVYRVTLKVEGRPPVYVGDITVYE 79 (134)
T ss_pred eEEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEE-EecCCeEEEEEEECCCCceeEEEEEEec
Confidence 35799999999999999999999 22211 38999999999 9999999999998886433322334443
No 20
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=97.53 E-value=0.0002 Score=69.92 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=51.5
Q ss_pred EEEeEEEeccCCccccCCCCCCcceEEEEEeCCC---cEEEEEEeCCCceEEE---c-cccCceEEEEEecCCce
Q 002258 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF---K-NIIPGKYKLRASHPNLS 194 (946)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g---~~v~~ttTd~~G~f~f---~-~l~pG~Y~l~~~~~g~~ 194 (946)
.|++.|++.. +|.|++||.|+|...++ +.+.+++||+||++.+ . .+.||.|+|.....+|-
T Consensus 28 ~Is~HVLDt~-------~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf 95 (137)
T PRK15036 28 ILSVHILNQQ-------TGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYF 95 (137)
T ss_pred CeEEEEEeCC-------CCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhh
Confidence 5999999863 58999999999986543 5688999999999986 2 37899999999888875
No 21
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=97.52 E-value=0.00026 Score=81.07 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=52.7
Q ss_pred eEEEeEEEcCCCCeeeceEEEEccEE---eeEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEc
Q 002258 326 FSVGGRVVDENDMGVEGVKILVDGHE---RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVL 391 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l~G~~---~~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~ 391 (946)
..|.|+|+|.+|+||+||+|.+.|.. ..+||++|.|.+ .|+||+|+|++++++|..... .+.+.
T Consensus 295 ~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~~~T~~~G~y~~-~l~pG~Y~v~vsa~Gy~~~~~-~v~v~ 361 (376)
T cd03866 295 LGVKGQVFDSNGNPIPNAIVEVKGRKHICPYRTNVNGEYFL-LLLPGKYMINVTAPGFKTVIT-NVIIP 361 (376)
T ss_pred CceEEEEECCCCCccCCeEEEEEcCCceeEEEECCCceEEE-ecCCeeEEEEEEeCCcceEEE-EEEeC
Confidence 36999999999999999999996653 358999999977 599999999999999865543 34444
No 22
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.47 E-value=0.00032 Score=80.75 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=51.4
Q ss_pred eEEEeEEEcCCCCeeeceEEEEccEEe-eEeCCCceEEEcccCCceEEEEEEeccceecce
Q 002258 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 385 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l~G~~~-~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~ 385 (946)
.+|+|+|.|.+|+|+++|+|.+.|... ++||.+|.|.+ .|++|+|+|+++..+|.....
T Consensus 298 ~~i~G~V~d~~g~pl~~A~V~i~~~~~~~~Td~~G~f~~-~l~~G~y~l~vs~~Gy~~~~~ 357 (374)
T cd03858 298 RGIKGFVRDANGNPIANATISVEGINHDVTTAEDGDYWR-LLLPGTYNVTASAPGYEPQTK 357 (374)
T ss_pred CceEEEEECCCCCccCCeEEEEecceeeeEECCCceEEE-ecCCEeEEEEEEEcCcceEEE
Confidence 379999999999999999999966554 68999999998 589999999999999765544
No 23
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.43 E-value=0.00049 Score=78.70 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=53.5
Q ss_pred eEEeEEEeeC--CCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEEEEEcCCceE
Q 002258 221 YEIRGLVVAQ--GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTV 298 (946)
Q Consensus 221 ~~v~G~V~~~--G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~~~~~~~~~ 298 (946)
..|.|+|++. |+||+||+|.+.... ..++||.+|.|.+ .|+||+|+|++++.|
T Consensus 297 ~gI~G~V~D~~~g~pl~~AtV~V~g~~--------------------~~~~Td~~G~f~~-~l~pG~ytl~vs~~G---- 351 (375)
T cd03863 297 RGVRGFVLDATDGRGILNATISVADIN--------------------HPVTTYKDGDYWR-LLVPGTYKVTASARG---- 351 (375)
T ss_pred CeEEEEEEeCCCCCCCCCeEEEEecCc--------------------CceEECCCccEEE-ccCCeeEEEEEEEcC----
Confidence 3689999974 899999999997642 3578999999998 699999999998887
Q ss_pred EEecCceEEEEEecc
Q 002258 299 FDVSPSLVSMSVRHQ 313 (946)
Q Consensus 299 ~~~~P~~~~vtV~~~ 313 (946)
+.|.++.|.|..+
T Consensus 352 --Y~~~~~~v~V~~~ 364 (375)
T cd03863 352 --YDPVTKTVEVDSK 364 (375)
T ss_pred --cccEEEEEEEcCC
Confidence 4455666777654
No 24
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.37 E-value=0.00046 Score=79.76 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=53.8
Q ss_pred eEEEeEEEcCCCCeeeceEEEEccEEe-eEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEc
Q 002258 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVL 391 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l~G~~~-~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~ 391 (946)
..|.|+|+|.+|+||++|.|.+.|... ++||.+|.|. ..|+||+|+|.++..+|..... .+.+.
T Consensus 318 ~~i~G~V~D~~g~pi~~A~V~v~g~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~~~~~-~v~v~ 382 (395)
T cd03867 318 RGIKGFVKDKDGNPIKGARISVRGIRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYTKVMK-RVTLP 382 (395)
T ss_pred ceeEEEEEcCCCCccCCeEEEEeccccceEECCCceEE-EecCCCcEEEEEEecCeeeEEE-EEEeC
Confidence 369999999999999999999977644 6899999997 5899999999999999865544 35554
No 25
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.22 E-value=0.0011 Score=75.52 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=54.4
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v 205 (946)
..|+|+|++. +|+|++||+|.+... . .++||.+|.|.+. |+||+|+|.+++.||... ..+|.|
T Consensus 287 ~gI~G~V~d~--------~g~pi~~A~V~v~g~--~---~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~~~---~~~V~v 349 (363)
T cd06245 287 KGVHGVVTDK--------AGKPISGATIVLNGG--H---RVYTKEGGYFHVL-LAPGQHNINVIAEGYQQE---HLPVVV 349 (363)
T ss_pred cEEEEEEEcC--------CCCCccceEEEEeCC--C---ceEeCCCcEEEEe-cCCceEEEEEEEeCceeE---EEEEEE
Confidence 5799999985 369999999999742 1 5789999999998 999999999999999865 245666
Q ss_pred ccCC
Q 002258 206 GFEN 209 (946)
Q Consensus 206 ~~~~ 209 (946)
..+.
T Consensus 350 ~~~~ 353 (363)
T cd06245 350 SHDE 353 (363)
T ss_pred cCCC
Confidence 5443
No 26
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.19 E-value=0.0011 Score=76.22 Aligned_cols=68 Identities=25% Similarity=0.454 Sum_probs=54.4
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v 205 (946)
..|.|+|.+. +|.|++||+|.+...+ ..++||.+|.| +..|+||+|+|.+++.||... ..+|+|
T Consensus 316 ~gI~G~V~D~--------~g~pi~~A~V~v~g~~----~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~---t~~v~V 379 (392)
T cd03864 316 QGIKGMVTDE--------NNNGIANAVISVSGIS----HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPS---TVTVTV 379 (392)
T ss_pred CeEEEEEECC--------CCCccCCeEEEEECCc----cceEECCCCcE-EecCCCeeEEEEEEEcCceeE---EEEEEE
Confidence 4799999985 2689999999996322 35789999999 999999999999999999865 235666
Q ss_pred ccCC
Q 002258 206 GFEN 209 (946)
Q Consensus 206 ~~~~ 209 (946)
..+.
T Consensus 380 ~~~~ 383 (392)
T cd03864 380 GPAE 383 (392)
T ss_pred cCCC
Confidence 5543
No 27
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=97.14 E-value=0.0016 Score=74.78 Aligned_cols=68 Identities=25% Similarity=0.468 Sum_probs=53.5
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v 205 (946)
..|.|+|.+. +|+|++||+|++...+ ....++||.+|.|.+. |+||+|+|.++++||... ..++.+
T Consensus 295 ~gI~G~V~D~--------~g~pi~~A~V~v~g~~--~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~~~---~~~v~v 360 (376)
T cd03866 295 LGVKGQVFDS--------NGNPIPNAIVEVKGRK--HICPYRTNVNGEYFLL-LLPGKYMINVTAPGFKTV---ITNVII 360 (376)
T ss_pred CceEEEEECC--------CCCccCCeEEEEEcCC--ceeEEEECCCceEEEe-cCCeeEEEEEEeCCcceE---EEEEEe
Confidence 3599999975 3699999999997432 2346789999999775 999999999999999754 245665
Q ss_pred cc
Q 002258 206 GF 207 (946)
Q Consensus 206 ~~ 207 (946)
..
T Consensus 361 ~~ 362 (376)
T cd03866 361 PY 362 (376)
T ss_pred CC
Confidence 54
No 28
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=97.14 E-value=0.36 Score=64.65 Aligned_cols=184 Identities=18% Similarity=0.239 Sum_probs=105.3
Q ss_pred CCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEcc-ccCceEEEEEecC-CceEE-eecc----EEEEEcc---CC--ee
Q 002258 144 KGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKN-IIPGKYKLRASHP-NLSVE-VRGS----TEVELGF---EN--GE 211 (946)
Q Consensus 144 ~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~-l~pG~Y~l~~~~~-g~~~~-~~~~----~~v~v~~---~~--~~ 211 (946)
+|+|++|+.+.+.+.+|+++.+.+||++|+..|.+ -.+..|.+..... +|... ..+. ..+.|.. .+ ..
T Consensus 316 sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~g~~~~~~~~k 395 (1621)
T COG2373 316 SGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVEGRAAPGYGLK 395 (1621)
T ss_pred CCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCccccccccccceecCCCceE
Confidence 48999999999999999999999999999999997 5666676665533 33222 0000 1222221 11 11
Q ss_pred e----eeeeeccceEEeEEEe--e-CCC-ceeceEEEEEE--CCCCcccCCCCCCCccCccceeeEEEecCCceEEEC--
Q 002258 212 V----DDIFFAPGYEIRGLVV--A-QGN-PILGVHIYLYS--DDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFK-- 279 (946)
Q Consensus 212 v----~~~l~v~g~~v~G~V~--~-~G~-Pi~Ga~V~L~~--~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~-- 279 (946)
+ +..+..+|=.+...+. + ++. ++.++.+.+.- .+|..+ .......|++|-++|.
T Consensus 396 ~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~--------------~~~~~~~~~~G~~~~~~~ 461 (1621)
T COG2373 396 VYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVL--------------RTLTITLDEEGLYELSFP 461 (1621)
T ss_pred EEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEECCCCcEE--------------EEEEEeccccCceEEeee
Confidence 1 2233445544444333 2 354 66766655543 333221 1234567788877764
Q ss_pred ---CcCCeeEEEEEEEcCCc--e--EEE---ecCceEEEEEeccceeeeceeEEEeeEEEeEEE--cCCCCeeeceEEE
Q 002258 280 ---SVPCGQYELVPHYKGEN--T--VFD---VSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVV--DENDMGVEGVKIL 346 (946)
Q Consensus 280 ---~Lp~G~Y~v~~~~~~~~--~--~~~---~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~--d~~G~pl~ga~V~ 346 (946)
+-+.|.|+++..+.+.. . .|. +.|..+.|.+..+.... ..+-.+.+.|. .-.|.|++|.++.
T Consensus 462 l~~na~tG~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k~~~-----~~g~~v~~~v~~~yL~GaPa~g~~~~ 535 (1621)
T COG2373 462 LPENALTGGYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKTEW-----VPGKDVKIKVDLRYLYGAPAAGLTVQ 535 (1621)
T ss_pred CCCCCCcceEEEEEEeCCccceeeeeEEhhHhCCceEEEecccccccc-----cCCCcEEEEEEEEecCCCcccCceee
Confidence 33568999999876632 1 222 56766666655432211 12222333332 2358888888776
No 29
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.05 E-value=0.002 Score=74.05 Aligned_cols=65 Identities=25% Similarity=0.352 Sum_probs=51.5
Q ss_pred EEeEEEeeC-CCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEEEEEcCCceEEE
Q 002258 222 EIRGLVVAQ-GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFD 300 (946)
Q Consensus 222 ~v~G~V~~~-G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~~~~~~~~~~~ 300 (946)
-|.|+|++. |+||+||+|.+.+.+ ..++||.+|.|.+ .|+||+|+|.+.+.|.
T Consensus 327 gI~G~V~D~~g~pI~~AtV~V~g~~--------------------~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy----- 380 (402)
T cd03865 327 GVKGFVKDLQGNPIANATISVEGID--------------------HDITSAKDGDYWR-LLAPGNYKLTASAPGY----- 380 (402)
T ss_pred ceEEEEECCCCCcCCCeEEEEEcCc--------------------cccEECCCeeEEE-CCCCEEEEEEEEecCc-----
Confidence 389999975 999999999998652 3468999999998 8999999999987763
Q ss_pred ecCceEEEEEecc
Q 002258 301 VSPSLVSMSVRHQ 313 (946)
Q Consensus 301 ~~P~~~~vtV~~~ 313 (946)
.+....|+|..+
T Consensus 381 -~~~~~~V~V~~~ 392 (402)
T cd03865 381 -LAVVKKVAVPYS 392 (402)
T ss_pred -ccEEEEEEEcCC
Confidence 344455666543
No 30
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=97.05 E-value=0.00091 Score=65.42 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=45.7
Q ss_pred EEEeEEEcC-CCCeeeceEEEE---ccE-----EeeEeCCCceEEE---c-ccCCceEEEEEEeccce
Q 002258 327 SVGGRVVDE-NDMGVEGVKILV---DGH-----ERSITDRDGYYKL---D-QVTSNRYTIEAVKVHYK 381 (946)
Q Consensus 327 sV~G~V~d~-~G~pl~ga~V~l---~G~-----~~~~TD~~G~f~~---~-~L~pG~Y~I~a~~~~y~ 381 (946)
.|++.|+|. .|+|++|+.|.| ++. ..++||+||+|.+ . .+.+|.|.|+....+|.
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf 95 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYF 95 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhh
Confidence 599999998 899999999999 221 2269999999986 2 38899999999988873
No 31
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=96.96 E-value=0.0018 Score=73.95 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=59.0
Q ss_pred EEEeEEEcCCCCeeeceEEEEccEE-eeEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEccCcceeceEEEe
Q 002258 327 SVGGRVVDENDMGVEGVKILVDGHE-RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAI 403 (946)
Q Consensus 327 sV~G~V~d~~G~pl~ga~V~l~G~~-~~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~~~~i~dI~~~ 403 (946)
-|.|.|+|.+|+||++|+|.++|-. ..+|..+|-|=- -|+||.|.|+|.+++|...+. .+.|.+..+..-|+++.
T Consensus 379 GIkG~V~D~~G~~I~NA~IsV~ginHdv~T~~~GDYWR-LL~PG~y~vta~A~Gy~~~tk-~v~V~~~~a~~~df~L~ 454 (500)
T KOG2649|consen 379 GIKGLVFDDTGNPIANATISVDGINHDVTTAKEGDYWR-LLPPGKYIITASAEGYDPVTK-TVTVPPDRAARVNFTLQ 454 (500)
T ss_pred ccceeEEcCCCCccCceEEEEecCcCceeecCCCceEE-eeCCcceEEEEecCCCcceee-EEEeCCCCccceeEEEe
Confidence 4899999999999999999997654 468888886543 499999999999999987776 57777744444455554
No 32
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=96.88 E-value=0.0047 Score=71.15 Aligned_cols=58 Identities=28% Similarity=0.436 Sum_probs=49.2
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~ 196 (946)
.+|+|+|.+. ++.|++||+|.+. |. ...++||.+|.|.+. |+||+|+|.++..||...
T Consensus 298 ~~i~G~V~d~--------~g~pl~~A~V~i~---~~-~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~~~ 355 (374)
T cd03858 298 RGIKGFVRDA--------NGNPIANATISVE---GI-NHDVTTAEDGDYWRL-LLPGTYNVTASAPGYEPQ 355 (374)
T ss_pred CceEEEEECC--------CCCccCCeEEEEe---cc-eeeeEECCCceEEEe-cCCEeEEEEEEEcCcceE
Confidence 4799999986 2689999999994 22 356889999999987 899999999999999754
No 33
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=96.85 E-value=0.0035 Score=72.12 Aligned_cols=58 Identities=22% Similarity=0.358 Sum_probs=49.4
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~ 196 (946)
..|.|+|.+. +|+|++||+|++.+.+ ..++||.+|.|.. .|+||+|+|.++..||...
T Consensus 296 ~~i~G~V~d~--------~g~pv~~A~V~v~~~~----~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~~ 353 (372)
T cd03868 296 IGVKGFVRDA--------SGNPIEDATIMVAGID----HNVTTAKFGDYWR-LLLPGTYTITAVAPGYEPS 353 (372)
T ss_pred CceEEEEEcC--------CCCcCCCcEEEEEecc----cceEeCCCceEEe-cCCCEEEEEEEEecCCCce
Confidence 4689999986 3699999999997532 4689999999984 7999999999999999864
No 34
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.85 E-value=0.0043 Score=56.96 Aligned_cols=60 Identities=27% Similarity=0.358 Sum_probs=31.6
Q ss_pred EEEeEEEeccCCccccCCCCCC--cceEEEEEeC-----CCcEEEEEEeCCCceEEEccccCceEEEEEecCC
Q 002258 127 TLLGRVVGAIGGESCLDKGGGP--SNVNVELLSH-----SGDLISSVITSSEGSYLFKNIIPGKYKLRASHPN 192 (946)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~pl--aGv~V~L~~~-----~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g 192 (946)
+|+|+|...+|- ..+. ..+.|-|... +-.....+.||++|+|+|++|.||+|.|.+-.+|
T Consensus 4 ~VsG~l~l~dg~------~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g 70 (95)
T PF14686_consen 4 SVSGRLTLSDGV------TNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADG 70 (95)
T ss_dssp EEEEEEE---SS--------TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE--
T ss_pred EEEEEEEEccCc------ccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEec
Confidence 688998754220 1233 3455555422 2244568899999999999999999999998865
No 35
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=96.75 E-value=0.0038 Score=62.10 Aligned_cols=53 Identities=32% Similarity=0.506 Sum_probs=44.5
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCC----------------cEEEEEEeCCCceEEEccccCceEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG----------------DLISSVITSSEGSYLFKNIIPGKYKL 186 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g----------------~~v~~ttTd~~G~f~f~~l~pG~Y~l 186 (946)
..|.|+|++.+ +.|+++|.|++...+. .......||++|+|+|..+.||.|.+
T Consensus 12 l~l~G~V~D~~--------g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 12 LTLTGTVLDGD--------GCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred EEEEEEEECCC--------CCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 46899999863 6899999999986653 22457899999999999999999995
No 36
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=96.67 E-value=0.0033 Score=72.29 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=51.2
Q ss_pred EEEeEEEcCCCCeeeceEEEEccEEe-eEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEcc
Q 002258 327 SVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (946)
Q Consensus 327 sV~G~V~d~~G~pl~ga~V~l~G~~~-~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p 392 (946)
-|.|.|+|.+|.||++|+|.++|... .+|.++|.|-= -|.||+|+|+|.+++|...+. .+.+..
T Consensus 330 GikG~V~d~~g~~i~~a~i~v~g~~~~v~t~~~GdywR-ll~pG~y~v~~~a~gy~~~~~-~~~v~~ 394 (405)
T cd03869 330 GIKGVVRDKTGKGIPNAIISVEGINHDIRTASDGDYWR-LLNPGEYRVTAHAEGYTSSTK-NCEVGY 394 (405)
T ss_pred CceEEEECCCCCcCCCcEEEEecCccceeeCCCCceEE-ecCCceEEEEEEecCCCcccE-EEEEcC
Confidence 58999999999999999999977433 57888996532 499999999999999876655 344543
No 37
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.62 E-value=0.0056 Score=56.19 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=30.0
Q ss_pred eEEEeEEEcCCC---Cee-eceEEEEc-------cE---EeeEeCCCceEEEcccCCceEEEEEEecc
Q 002258 326 FSVGGRVVDEND---MGV-EGVKILVD-------GH---ERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (946)
Q Consensus 326 ~sV~G~V~d~~G---~pl-~ga~V~l~-------G~---~~~~TD~~G~f~~~~L~pG~Y~I~a~~~~ 379 (946)
.+|+|+|..++| .+. ..+.|-+. .+ .-+.||++|+|++++|.||+|+|.+-.++
T Consensus 3 G~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g 70 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADG 70 (95)
T ss_dssp BEEEEEEE---SS--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE--
T ss_pred CEEEEEEEEccCcccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEec
Confidence 478999987666 333 34555552 11 22689999999999999999999998854
No 38
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=96.59 E-value=0.0052 Score=58.03 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=47.5
Q ss_pred EEeEEEeccCCccccCCCCCCcceEEEEEeCCC---cEEEEEEeCCCceEE-----EccccCceEEEEEecCCce
Q 002258 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYL-----FKNIIPGKYKLRASHPNLS 194 (946)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g---~~v~~ttTd~~G~f~-----f~~l~pG~Y~l~~~~~g~~ 194 (946)
|+=.|++.. .|.|.+||.|+|...++ +.+.+.+||+||+.. -..+++|.|+|+.....|-
T Consensus 3 lstHVLDt~-------~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTT-------SGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCC-------CCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 444577652 48999999999987554 468899999999997 3567899999999877764
No 39
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=96.55 E-value=0.009 Score=69.17 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=52.2
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v 205 (946)
..|.|+|++. +++|++||+|.+... -..++||.+|.|. ..|+||+|+|.+++.||... ..+|++
T Consensus 318 ~~i~G~V~D~--------~g~pi~~A~V~v~g~----~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~~~---~~~v~v 381 (395)
T cd03867 318 RGIKGFVKDK--------DGNPIKGARISVRGI----RHDITTAEDGDYW-RLLPPGIHIVSAQAPGYTKV---MKRVTL 381 (395)
T ss_pred ceeEEEEEcC--------CCCccCCeEEEEecc----ccceEECCCceEE-EecCCCcEEEEEEecCeeeE---EEEEEe
Confidence 4699999986 268999999999742 2458899999997 56999999999999999755 235655
Q ss_pred c
Q 002258 206 G 206 (946)
Q Consensus 206 ~ 206 (946)
.
T Consensus 382 ~ 382 (395)
T cd03867 382 P 382 (395)
T ss_pred C
Confidence 4
No 40
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.49 E-value=7.3 Score=54.39 Aligned_cols=170 Identities=15% Similarity=0.208 Sum_probs=97.7
Q ss_pred EEEEE-EcCeeEEEEEEeeCCCCCCceEEcCCeEEEEEcCcccceEEEEeeeE--E--EEEEEeccCCCCceEEEEEEcC
Q 002258 443 NFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQALVN--V--LGNVACKERCGPLVTVTLMRLG 517 (946)
Q Consensus 443 ~F~f~-l~pG~Y~v~~~~~~~e~~~G~~~~p~~~~V~V~~pv~~i~F~q~~a~--V--~G~V~~~~~~~~~~~VtL~~~~ 517 (946)
+.+.. ..||.|+|++.+.. .+.|...+.+++|..++.++.+.-..-. + .++++..-..++.+...+..-+
T Consensus 1831 ~v~~Tf~~aG~ytV~L~AsN-----~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1831 HACMTFPDAGTFAIRLNASN-----AVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred eeEEecCCCeEEEEEEEEEc-----ccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence 34555 88999999999863 2345556666777666666655321110 1 1222222223333333333322
Q ss_pred cccccCCcceeEEEeeCCccEEEcccCCccEEEEEEeeccccccCCCCeeEeeeeEEEEeecCccccceEEE--------
Q 002258 518 QKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQ-------- 589 (946)
Q Consensus 518 ~~~~~~~~~~~~~~t~~~G~f~f~~v~PG~Y~v~v~~~~~~~~~~~~~~cw~~~~~~v~V~~~~~~~i~f~q-------- 589 (946)
+. ...+ +...+|+-.=-.||+|.|++... ...-|.+..+.|+|.+. +.++.+..
T Consensus 1906 gs--------~~~~-t~~~t~~HsY~~~G~Y~VtV~A~--------N~Vs~~~a~~~V~Vle~-V~gL~I~~~c~~~~~~ 1967 (2740)
T TIGR00864 1906 AA--------PEVL-QPGPRFSHSFPRVDDHMVNLRAK--------NEVSCAQANLHIEVLEA-VRGLQIPDCCAAGIAT 1967 (2740)
T ss_pred CC--------ceee-cCCCeEEeecCCCCcEEEEEEEE--------eccceeeeeEEEEEEEe-ccceEecCCcccceec
Confidence 21 1111 12345555555699999999864 34567888888888543 45554443
Q ss_pred ---eeeEEEEEecceeeEEEE-e---eCCCeeeEEeccc-ceeEEecCCceeEEEe
Q 002258 590 ---KGYWLNVISTHDVDAYMT-Q---QDGSHVPLKVKKG-SQHICVESPGVHNLHF 637 (946)
Q Consensus 590 ---~Gy~~~i~~sh~~~~~~~-~---~~~~~~~~~l~~G-~~~~cv~~~G~y~~~~ 637 (946)
.=|..+++..+++...|. . -.|.. +.+..| ...+-.+.+|.|++++
T Consensus 1968 g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~--~~~~~G~~vty~~~~~G~~~I~v 2021 (2740)
T TIGR00864 1968 GEEKNFTANVQRGKPVAFAWTFDLHHLHGDS--LVIHMGKDVSYTAEAAGLLEIQL 2021 (2740)
T ss_pred CceEEEEEEEecCCceEEEEEeeecccCCCc--ceeecCCceEEccCCCcEEEEEE
Confidence 335566788888877774 1 12222 344556 4577788999999997
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=96.47 E-value=0.0057 Score=60.86 Aligned_cols=48 Identities=31% Similarity=0.606 Sum_probs=41.3
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccE----------------EeeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGH----------------ERSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~----------------~~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|.|+++|.|.+ +|. -...||++|.|+|..+.||.|.+
T Consensus 12 l~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 12 LTLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 4789999999999999999998 221 12589999999999999999995
No 42
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.28 E-value=0.0063 Score=64.30 Aligned_cols=52 Identities=31% Similarity=0.502 Sum_probs=44.1
Q ss_pred eeEEEeEEEcCCCCeeeceEEEE-----ccEE------------------eeEeCCCceEEEcccCCceEEEEEE
Q 002258 325 GFSVGGRVVDENDMGVEGVKILV-----DGHE------------------RSITDRDGYYKLDQVTSNRYTIEAV 376 (946)
Q Consensus 325 g~sV~G~V~d~~G~pl~ga~V~l-----~G~~------------------~~~TD~~G~f~~~~L~pG~Y~I~a~ 376 (946)
...|.|+|+|.+|+||++|.|.+ .|.. .+.||++|.|.|.-|.||.|-....
T Consensus 72 ~i~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~ 146 (226)
T COG3485 72 RILLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNG 146 (226)
T ss_pred eEEEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCC
Confidence 45799999999999999999998 2321 2589999999999999999987655
No 43
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=96.21 E-value=0.016 Score=53.54 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=38.1
Q ss_pred CCCCCcceEEEEEe-CCCcEEEEEEeCCCceEEEccccCceEEEEEec
Q 002258 144 KGGGPSNVNVELLS-HSGDLISSVITSSEGSYLFKNIIPGKYKLRASH 190 (946)
Q Consensus 144 ~g~plaGv~V~L~~-~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~ 190 (946)
+++|++||+|+|++ .+|+++.+.+||++|..+|+.. -..+.+.+++
T Consensus 24 tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~-~~~~~viA~~ 70 (97)
T PF11974_consen 24 TGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST-KKPFLVIARK 70 (97)
T ss_pred CCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC-CCCEEEEEEE
Confidence 57999999999999 8899999999999999999976 3334444443
No 44
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=96.15 E-value=5.9 Score=49.92 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCEEEEEEeCC--CcEEE--cCCCCCccEEEEEEcCCC-cccCCceeEEEEcCC--CcCCCceeeEEEeCc
Q 002258 54 VTVELRTLDGLVKESTQCAP--NGYYF--IPVYDKGSFVIKVNGPEG-WSWNPDKVAVTVDDT--GCNGNEDINFRFTGF 126 (946)
Q Consensus 54 v~V~L~~~~G~~~~~t~t~~--nG~y~--ip~l~~G~Y~l~v~~P~G-~~~~p~~v~v~vd~~--~~s~~~dinf~~~g~ 126 (946)
+++++++++|+.+..-..+. +|.|. ...-.+|.|.+.+.--.- -.+.| ..+...++ .|--...++. ..|.
T Consensus 392 levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~gd~i~gSP--f~~ra~~dask~~~~~~i~~-~vg~ 468 (1113)
T KOG0518|consen 392 LEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYGGDPIPGSP--FTARAYPDASKEVLVPPINA-QVGK 468 (1113)
T ss_pred EEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEECCcccCCCc--eEEEeccCccceEecCCCcc-cccc
Confidence 68999999998876665544 54655 333379999998773210 11233 22333221 1211111120 1111
Q ss_pred EEEeEEEeccCCccccCCCCCCcceEEEEEeCCC-cEEEEEEeCCCceEE--EccccCceEEEEEecCCc
Q 002258 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG-DLISSVITSSEGSYL--FKNIIPGKYKLRASHPNL 193 (946)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g-~~v~~ttTd~~G~f~--f~~l~pG~Y~l~~~~~g~ 193 (946)
.- ..|.++. +.+.+. ++.++.+.++ ++-....-..||+|. |+.-.||+|.+.+...|.
T Consensus 469 ~~-~~~vdak------~ag~g~--~~~~~~~pdn~n~~~~v~~~~dg~~~iv~ta~~~~~~~i~v~f~ge 529 (1113)
T KOG0518|consen 469 EA-NFVVDAK------AAGAGP--VTCTVVTPDNRNVPADVQKNGDGTFDIVFTAQDPGTYTIDVRFGGE 529 (1113)
T ss_pred ee-eeEeehh------hccCCC--ceeEEeccccCCCCceeeeccCcceeeEeccCCCCcceEEEEECCe
Confidence 11 1122210 012332 6666666655 333455567788554 455578999998876544
No 45
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=95.98 E-value=11 Score=51.31 Aligned_cols=233 Identities=17% Similarity=0.176 Sum_probs=123.4
Q ss_pred CCccccceEEEEEeCCCCEEEEEEeCCCcEEEcCC-CCCccEEEEEEcCCCcccCCce------eEEEEcCCCcCCCcee
Q 002258 47 ARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPV-YDKGSFVIKVNGPEGWSWNPDK------VAVTVDDTGCNGNEDI 119 (946)
Q Consensus 47 ~~i~~sgv~V~L~~~~G~~~~~t~t~~nG~y~ip~-l~~G~Y~l~v~~P~G~~~~p~~------v~v~vd~~~~s~~~di 119 (946)
...+.+|+++.+++.+|.++.+.+|+++|...+.. -.+..|.+....-.+|.+-... -.+.|++.. ..+.++
T Consensus 316 sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~g~~-~~~~~~ 394 (1621)
T COG2373 316 SGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVEGRA-APGYGL 394 (1621)
T ss_pred CCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCcccccccccccee-cCCCce
Confidence 34567799999999999999999999999988775 3456666655544444432110 012233310 111122
Q ss_pred eE-EE--eC-----cEEEeEEEeccCCccccCCCC-CCcc--eEEEEEeCCCcEEEE--EEeCCCceEEEc-----cccC
Q 002258 120 NF-RF--TG-----FTLLGRVVGAIGGESCLDKGG-GPSN--VNVELLSHSGDLISS--VITSSEGSYLFK-----NIIP 181 (946)
Q Consensus 120 nf-~~--~g-----~~IsG~V~~~~g~~s~~~~g~-plaG--v~V~L~~~~g~~v~~--ttTd~~G~f~f~-----~l~p 181 (946)
.+ .+ +| =++...++..+- .+. .+.+ +++.+.+++|..+++ .++|++|-++|. +-+-
T Consensus 395 k~y~ftDRglYRpGE~v~~~~~~R~~------~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~t 468 (1621)
T COG2373 395 KVYLFTDRGLYRPGETVHVNALLRDF------DGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALT 468 (1621)
T ss_pred EEEEecCcccCCCCceeeeeeeehhh------cccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCc
Confidence 22 22 22 223322222110 123 4455 556667899977654 556788888776 3345
Q ss_pred ceEEEEEecCC--ceEEeeccEEEEEc---cCCeee----eeeeeccceEEeEEEee---CCCceeceEEE--EEECCC-
Q 002258 182 GKYKLRASHPN--LSVEVRGSTEVELG---FENGEV----DDIFFAPGYEIRGLVVA---QGNPILGVHIY--LYSDDV- 246 (946)
Q Consensus 182 G~Y~l~~~~~g--~~~~~~~~~~v~v~---~~~~~v----~~~l~v~g~~v~G~V~~---~G~Pi~Ga~V~--L~~~~~- 246 (946)
|.|+|++...+ ...+ .+|.|. .++..+ +......|-.+.++|.. .|.|.+|.++. |.-...
T Consensus 469 G~w~l~~~~~~~~~~~s----~~f~V~df~p~r~~i~l~~~k~~~~~g~~v~~~v~~~yL~GaPa~g~~~~~~l~lr~~~ 544 (1621)
T COG2373 469 GGYTLELYTGGKSAVIS----MSFRVEDFIPDRFKINLTLDKTEWVPGKDVKIKVDLRYLYGAPAAGLTVQGELDLRPTR 544 (1621)
T ss_pred ceEEEEEEeCCccceee----eeEEhhHhCCceEEEecccccccccCCCcEEEEEEEEecCCCcccCceeeeEEEeeccc
Confidence 89999997655 3322 233332 111111 11123456667777763 59999998887 433211
Q ss_pred CcccCCCCC--CCc---cCcc---ceeeEEEecCCceEEECCcCCe---eEEEEE
Q 002258 247 GKVDCPQGS--GNA---LGER---KALCHAVSDADGKFMFKSVPCG---QYELVP 290 (946)
Q Consensus 247 ~~~~c~~g~--~~~---~~~g---~~~~~~~TD~~G~f~f~~Lp~G---~Y~v~~ 290 (946)
..+...++- ... +... ......++|.+|+..|.--.++ +|.+..
T Consensus 545 ~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~D~~G~a~~~l~~~~~~s~~~~~~ 599 (1621)
T COG2373 545 FSVPGFPGFTFGLADEEPNSLTFEEELELTVTDGKGKASLDLDLAETPSPYQLLV 599 (1621)
T ss_pred ccccCCcceeeeccccccccccccccccccccCCCCcEeEecccccCCCceEEEe
Confidence 111111110 001 1110 1233488999999999643333 455544
No 46
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=95.92 E-value=0.012 Score=60.67 Aligned_cols=48 Identities=33% Similarity=0.580 Sum_probs=35.9
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE----------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE----------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~----------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
+.|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+
T Consensus 30 l~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 30 LVLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPI 98 (183)
T ss_dssp EEEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEE
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCC
Confidence 4689999999999999999998 3321 1489999999999999999976
No 47
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=95.82 E-value=0.032 Score=57.55 Aligned_cols=68 Identities=22% Similarity=0.445 Sum_probs=41.1
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCC-CccCccceeeEEEecCCceEEECCcCCeeEEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSG-NALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~-~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~ 289 (946)
..|.|+|++ +|+||+||.|.++..+........... ..+ .........||++|+|.|..+.||.|.+-
T Consensus 30 l~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~-~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~ 99 (183)
T PF00775_consen 30 LVLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQP-DFNLRGRFRTDADGRYSFRTIKPGPYPIP 99 (183)
T ss_dssp EEEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSS-TTTTEEEEEECTTSEEEEEEE----EEES
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCcccccccccccc-CCCcceEEecCCCCEEEEEeeCCCCCCCC
Confidence 467899997 699999999999987532111111000 011 12245788999999999999999999874
No 48
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.81 E-value=0.012 Score=62.16 Aligned_cols=48 Identities=33% Similarity=0.629 Sum_probs=40.8
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE-------------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~-------------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-|.||.|.+
T Consensus 66 i~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 66 IIVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4689999999999999999998 2210 2489999999999999999976
No 49
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=95.67 E-value=0.024 Score=54.75 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=42.3
Q ss_pred eeceEEEEc-cEE---eeEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEc
Q 002258 340 VEGVKILVD-GHE---RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVL 391 (946)
Q Consensus 340 l~ga~V~l~-G~~---~~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~ 391 (946)
.++.+|.|+ |+. .+....||.|.|.+|++|+|.|++....|.|.+. .+.+.
T Consensus 7 ~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~~-RVdV~ 61 (123)
T PF09430_consen 7 PSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFPPY-RVDVS 61 (123)
T ss_pred CCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCccccCE-EEEEe
Confidence 456778884 343 5789999999999999999999999999999987 45555
No 50
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.59 E-value=0.016 Score=58.32 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=40.8
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccE-------------------EeeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGH-------------------ERSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~-------------------~~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|+|.-+.||.|.+
T Consensus 16 l~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 16 IILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 4689999999999999999998 221 01489999999999999999985
No 51
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.58 E-value=0.033 Score=56.09 Aligned_cols=69 Identities=19% Similarity=0.349 Sum_probs=46.4
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCC-ccC--ccceeeEEEecCCceEEECCcCCeeEEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGN-ALG--ERKALCHAVSDADGKFMFKSVPCGQYELV 289 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~-~~~--~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~ 289 (946)
..|.|+|++ +|+||+||.|.++-.+............ .+. +........||++|+|.|..+.||.|.+-
T Consensus 16 l~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~p 88 (158)
T cd03459 16 IILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPWR 88 (158)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCCC
Confidence 367899996 6999999999999875421111110000 000 11124678999999999999999999863
No 52
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=95.56 E-value=0.019 Score=54.32 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=42.9
Q ss_pred EEeEEEcC-CCCeeeceEEEE---ccE---Ee--eEeCCCceEE-----EcccCCceEEEEEEeccce
Q 002258 328 VGGRVVDE-NDMGVEGVKILV---DGH---ER--SITDRDGYYK-----LDQVTSNRYTIEAVKVHYK 381 (946)
Q Consensus 328 V~G~V~d~-~G~pl~ga~V~l---~G~---~~--~~TD~~G~f~-----~~~L~pG~Y~I~a~~~~y~ 381 (946)
|+=.|+|. .|+|.+|+.|.| ++. .+ ++||+||+.. .+.+++|.|+|++....|.
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 44568886 899999999998 332 22 5899999987 4567899999999888763
No 53
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=95.48 E-value=0.038 Score=52.25 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=42.4
Q ss_pred CCCCCcceEEEEEeCCC---cEEEEEEeCCCceEEE-----ccccCceEEEEEecCCce
Q 002258 144 KGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF-----KNIIPGKYKLRASHPNLS 194 (946)
Q Consensus 144 ~g~plaGv~V~L~~~~g---~~v~~ttTd~~G~f~f-----~~l~pG~Y~l~~~~~g~~ 194 (946)
.|.|.+|+.|+|...++ +.+.+.+||+||+..- ..+.+|.|+|+.....|-
T Consensus 12 ~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf 70 (112)
T cd05822 12 TGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYF 70 (112)
T ss_pred CCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhh
Confidence 48999999999987654 4689999999999863 357789999999877764
No 54
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=95.48 E-value=0.014 Score=62.57 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=40.8
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE--------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~--------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|-|
T Consensus 99 l~v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 99 LLIRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 4689999999999999999998 3321 2489999999999999999965
No 55
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=95.43 E-value=0.024 Score=59.98 Aligned_cols=48 Identities=35% Similarity=0.630 Sum_probs=40.8
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE-------------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~-------------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-|.||.|.+
T Consensus 61 i~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 61 IIVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4689999999999999999998 2310 2479999999999999999976
No 56
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.39 E-value=0.037 Score=57.09 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=45.9
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCCcc----CccceeeEEEecCCceEEECCcCCeeEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNAL----GERKALCHAVSDADGKFMFKSVPCGQYEL 288 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~----~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v 288 (946)
..+.|+|++ +|+||+||.|.++..+.... -.+..+.. .+........||++|+|+|..+.||.|-.
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqad~~G~--Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~ 107 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQADAAGR--YAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG 107 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCCCCCc--cCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC
Confidence 467899996 69999999999998764211 11111100 11112457899999999999999999874
No 57
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=95.35 E-value=0.018 Score=62.90 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=41.1
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE--------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~--------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|
T Consensus 133 l~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 133 LVFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred EEEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 4689999999999999999998 3432 2489999999999999999975
No 58
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=95.27 E-value=0.022 Score=62.32 Aligned_cols=48 Identities=31% Similarity=0.548 Sum_probs=40.9
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE--------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~--------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|
T Consensus 125 l~l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 125 LVMHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred EEEEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 4689999999999999999998 3321 2489999999999999999965
No 59
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=95.26 E-value=0.025 Score=61.02 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=41.4
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE--------------eeEeCCCceEEEcccCCceEEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~--------------~~~TD~~G~f~~~~L~pG~Y~I~ 374 (946)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+-
T Consensus 105 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip 172 (256)
T cd03458 105 LFVHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIP 172 (256)
T ss_pred EEEEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCC
Confidence 4689999999999999999998 3321 24899999999999999999764
No 60
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=95.23 E-value=13 Score=47.14 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.1
Q ss_pred EeCCCceEEEcccC--CceEEEEEEecc
Q 002258 354 ITDRDGYYKLDQVT--SNRYTIEAVKVH 379 (946)
Q Consensus 354 ~TD~~G~f~~~~L~--pG~Y~I~a~~~~ 379 (946)
.-+.||.+.+.-+| ||.|+|.+...+
T Consensus 625 ~dn~Dgt~~vsy~P~vpG~y~i~V~~~~ 652 (1113)
T KOG0518|consen 625 YDNKDGTCSVSYTPTVPGVYKIEVKFGD 652 (1113)
T ss_pred EeCCCCcEEeccCCCCCceEEEEEEECC
Confidence 56789999998887 599999998754
No 61
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.23 E-value=0.029 Score=57.82 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=40.3
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE------------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE------------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~------------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|..
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~ 107 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG 107 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC
Confidence 4689999999999999999998 2210 2479999999999999999974
No 62
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=95.22 E-value=0.024 Score=62.07 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=40.8
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE--------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~--------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|
T Consensus 129 l~v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 129 LFLHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred EEEEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 4689999999999999999998 3321 2489999999999999999965
No 63
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=95.20 E-value=0.039 Score=59.27 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=46.7
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCC-ccCccceeeEEEecCCceEEECCcCCeeEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGN-ALGERKALCHAVSDADGKFMFKSVPCGQYEL 288 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~-~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v 288 (946)
..+.|+|++ +|+||+||.|.++..+... +-.+..+ .+ .........||++|+|.|..+.||.|-+
T Consensus 99 l~v~G~V~D~~G~Pv~~A~VeiWqad~~G--~Y~~~~~~~~-~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 99 LLIRGTVRDLSGTPVAGAVIDVWHSTPDG--KYSGFHDNIP-DDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCC--CCCCCCCCCC-CCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 467899996 6999999999999875321 1111111 11 1223478899999999999999999976
No 64
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=95.17 E-value=0.076 Score=55.88 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=49.8
Q ss_pred cceEEeEEEeeCCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEEEEEc
Q 002258 219 PGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYK 293 (946)
Q Consensus 219 ~g~~v~G~V~~~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~~~~ 293 (946)
.|-.+..+|.-+|+|++|+.|.+....... .........+||++|++.|.-..+|.|.|.+.+.
T Consensus 149 ~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~-----------~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~ 212 (215)
T PF10670_consen 149 AGDPLPFQVLFDGKPLAGAEVEAFSPGGWY-----------DVEHEAKTLKTDANGRATFTLPRPGLWLIRASHK 212 (215)
T ss_pred CCCEEEEEEEECCeEcccEEEEEEECCCcc-----------ccccceEEEEECCCCEEEEecCCCEEEEEEEEEe
Confidence 455678889999999999999998874310 0000136789999999999988999999999764
No 65
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=95.15 E-value=0.057 Score=52.10 Aligned_cols=56 Identities=30% Similarity=0.537 Sum_probs=43.5
Q ss_pred CCCcceEEEEEeCCCcE-EEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEEc
Q 002258 146 GGPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (946)
Q Consensus 146 ~plaGv~V~L~~~~g~~-v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v~ 206 (946)
.-++..+|.|.. |+. ..++....||.|.|.+|++|.|.|.+.+++|.+. ...|.|.
T Consensus 5 ~~~~~t~V~L~~--g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~---~~RVdV~ 61 (123)
T PF09430_consen 5 NLPSSTRVTLNG--GQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFP---PYRVDVS 61 (123)
T ss_pred cCCCCEEEEEeC--CCccceEEEecCCCEEEeCCCCCceEEEEEECCCcccc---CEEEEEe
Confidence 456788888842 322 3478899999999999999999999999999876 2445544
No 66
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=95.15 E-value=0.058 Score=58.29 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=45.0
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCC--C------------cEEEEEEeCCCceEEEccccCceEEEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 188 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g------------~~v~~ttTd~~G~f~f~~l~pG~Y~l~~ 188 (946)
..++|+|++. +|+|++||.|++...+ | ..-....||++|+|.|.-+.||.|-+-.
T Consensus 105 l~l~G~V~D~--------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip~ 173 (256)
T cd03458 105 LFVHGTVTDT--------DGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIPP 173 (256)
T ss_pred EEEEEEEEcC--------CCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCCC
Confidence 4578999986 2699999999998554 3 2245789999999999999999998754
No 67
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.14 E-value=0.036 Score=58.65 Aligned_cols=62 Identities=31% Similarity=0.470 Sum_probs=51.7
Q ss_pred CcEEEeEEEeccCCccccCCCCCCcceEEEEEeCC--C----------c------EEEEEEeCCCceEEEccccCceEEE
Q 002258 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G----------D------LISSVITSSEGSYLFKNIIPGKYKL 186 (946)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g----------~------~v~~ttTd~~G~f~f~~l~pG~Y~l 186 (946)
.+.|+|+|++.+ |.|++|+.|++...+ | . ....+.||++|.|.|..+.||.|-.
T Consensus 72 ~i~l~G~VlD~~--------G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~ 143 (226)
T COG3485 72 RILLEGRVLDGN--------GRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPW 143 (226)
T ss_pred eEEEEEEEECCC--------CCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccC
Confidence 367899999862 799999999998654 3 1 3467999999999999999999999
Q ss_pred EEecCCce
Q 002258 187 RASHPNLS 194 (946)
Q Consensus 187 ~~~~~g~~ 194 (946)
.-..+.|.
T Consensus 144 ~~~~~~~R 151 (226)
T COG3485 144 RNGGPMWR 151 (226)
T ss_pred CCCCCcCc
Confidence 88887774
No 68
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=95.14 E-value=0.022 Score=61.17 Aligned_cols=48 Identities=33% Similarity=0.437 Sum_probs=40.7
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE--------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~--------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|-|
T Consensus 100 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Ypi 166 (247)
T cd03462 100 LLFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQI 166 (247)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCC
Confidence 4689999999999999999998 3321 2489999999999999999965
No 69
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=95.13 E-value=0.026 Score=61.59 Aligned_cols=48 Identities=31% Similarity=0.493 Sum_probs=41.1
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccE--------------EeeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGH--------------ERSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~--------------~~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|.|.-+.||.|.|
T Consensus 121 l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 121 CFVHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPI 187 (277)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 4689999999999999999998 331 12489999999999999999976
No 70
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=94.99 E-value=0.06 Score=50.81 Aligned_cols=60 Identities=18% Similarity=0.414 Sum_probs=45.6
Q ss_pred EEeEEEeccCCccccCCCCCCcceEEEEEeCC--C--cEEEEEEeCCCceEEE----ccccCceEEEEEecCCce
Q 002258 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYLF----KNIIPGKYKLRASHPNLS 194 (946)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g--~~v~~ttTd~~G~f~f----~~l~pG~Y~l~~~~~g~~ 194 (946)
|+=-|++.. .|.|.+|+.|+|...+ + +.+.+.+||+||+..= ..+.+|.|+|+..-..|-
T Consensus 3 lStHVLDt~-------~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Yf 70 (113)
T cd05469 3 LMVKVLDAV-------RGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSYW 70 (113)
T ss_pred ceEEEEeCC-------CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHhH
Confidence 344566652 5899999999998754 2 5689999999999852 346789999999776663
No 71
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.97 E-value=0.031 Score=58.03 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=40.5
Q ss_pred eEEEeEEEcCCCCeeeceEEEE-----ccEE-------------------eeEeCCCceEEEcccCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l-----~G~~-------------------~~~TD~~G~f~~~~L~pG~Y~I 373 (946)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|..
T Consensus 40 l~l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 40 IRLEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 4689999999999999999998 2210 1479999999999999999976
No 72
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=94.95 E-value=0.045 Score=51.16 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=46.9
Q ss_pred EEeEEEeccCCccccCCCCCCcceEEEEEeCCC---cEEEEEEeCCCceEEEc-----cccCceEEEEEecCCce
Q 002258 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLFK-----NIIPGKYKLRASHPNLS 194 (946)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g---~~v~~ttTd~~G~f~f~-----~l~pG~Y~l~~~~~g~~ 194 (946)
++=-|++. ..|.|.+||+|+|+...+ +.+.++.||+||+-.-. .+.+|.|+|++...+|.
T Consensus 11 LTTHVLDt-------a~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdYf 78 (124)
T COG2351 11 LTTHVLDT-------ASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDYF 78 (124)
T ss_pred eeeeeeec-------ccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchhh
Confidence 44456654 258999999999997766 47899999999998733 44578999999887775
No 73
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=94.94 E-value=0.083 Score=55.59 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=47.4
Q ss_pred CcEEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcE-----EEEEEeCCCceEEEccccCceEEEEEec
Q 002258 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDL-----ISSVITSSEGSYLFKNIIPGKYKLRASH 190 (946)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~-----v~~ttTd~~G~f~f~~l~pG~Y~l~~~~ 190 (946)
|-.++.+|+-. |+|++|+.|.+...++.. ....+||++|++.|.-..||.|.|.+.+
T Consensus 150 g~~~~~~vl~~---------GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVLFD---------GKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEEC---------CeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 44577788753 799999999998776432 5689999999999998899999999976
No 74
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=94.93 E-value=0.058 Score=51.48 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=46.0
Q ss_pred EEeEEEeccCCccccCCCCCCcceEEEEEeCC-C---cEEEEEEeCCCceEE--E--ccccCceEEEEEecCCce
Q 002258 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G---DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNLS 194 (946)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~-g---~~v~~ttTd~~G~f~--f--~~l~pG~Y~l~~~~~g~~ 194 (946)
|+=-|++.. .|.|.+||.|+|...+ + +.+.+.+||+||+.. + ..+.+|.|+|++.-..|-
T Consensus 9 ittHVLDt~-------~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf 76 (121)
T cd05821 9 LMVKVLDAV-------RGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTKAYW 76 (121)
T ss_pred cEEEEEECC-------CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEehhHhh
Confidence 444577652 5899999999998654 3 568999999999995 2 245689999999776664
No 75
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.89 E-value=0.068 Score=56.54 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=46.4
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCC-CCCccC--ccceeeEEEecCCceEEECCcCCeeEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQG-SGNALG--ERKALCHAVSDADGKFMFKSVPCGQYEL 288 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g-~~~~~~--~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v 288 (946)
..|+|+|++ +|+||+||.|.++..+......... ....+. +........||++|+|+|..+.||.|.+
T Consensus 66 i~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 66 IIVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 467899996 6999999999999875321111000 000001 1112567899999999999999999976
No 76
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=94.88 E-value=0.047 Score=59.86 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=47.3
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~ 289 (946)
..+.|+|++ +|+||+||.|.++..+.... -.............+...||++|+|.|..+.||.|-|-
T Consensus 129 l~v~G~V~D~~G~PI~gA~VeIWqad~~G~--Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~YpiP 196 (285)
T TIGR02439 129 LFLHGQVTDADGKPIAGAKVELWHANTKGN--YSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGCP 196 (285)
T ss_pred EEEEEEEECCCCCCcCCcEEEEEccCCCCC--cCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcCC
Confidence 357899996 69999999999998753211 11110111112235788999999999999999999864
No 77
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.82 E-value=0.058 Score=57.93 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=46.8
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~ 289 (946)
..+.|+|++ +|+||+||.|.++..+.......+.. ..+ .........||++|+|.|..+.||.|-+-
T Consensus 100 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~-~~~-~~~~RG~~~Td~~G~y~F~Ti~P~~YpiP 167 (247)
T cd03462 100 LLFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHP-NIP-EDYYRGKIRTDEDGRYEVRTTVPVPYQIP 167 (247)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCC-CCC-CCCCEEEEEeCCCCCEEEEEECCCCcCCC
Confidence 357899996 69999999999998764211111100 011 11234678999999999999999999763
No 78
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.78 E-value=0.075 Score=55.21 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=46.0
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCCc-----cCccceeeEEEecCCceEEECCcCCeeEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNA-----LGERKALCHAVSDADGKFMFKSVPCGQYEL 288 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~-----~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v 288 (946)
..+.|+|++ +|+||+||.|.++..+.... -.+..+. ..+........||++|+|+|..+.||.|..
T Consensus 40 l~l~G~V~D~~g~Pv~~A~VeiWqad~~G~--Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 40 IRLEGRVLDGDGHPVPDALIEIWQADAAGR--YNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCc--cCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 467899996 69999999999998753211 1111000 001112467899999999999999999876
No 79
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.78 E-value=0.11 Score=44.77 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=38.8
Q ss_pred eeceEEEEccEEeeEeCCCceEEEcccCCceEEEEEEeccceecceeeEEEccCc
Q 002258 340 VEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 394 (946)
Q Consensus 340 l~ga~V~l~G~~~~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~~~v~v~p~~ 394 (946)
.+||.|.+||+....|. ..+..|++|.|+|++.+++|..... .+.+.++.
T Consensus 10 p~gA~V~vdg~~~G~tp----~~~~~l~~G~~~v~v~~~Gy~~~~~-~v~v~~~~ 59 (71)
T PF08308_consen 10 PSGAEVYVDGKYIGTTP----LTLKDLPPGEHTVTVEKPGYEPYTK-TVTVKPGE 59 (71)
T ss_pred CCCCEEEECCEEeccCc----ceeeecCCccEEEEEEECCCeeEEE-EEEECCCC
Confidence 46899999999887443 4776799999999999999865544 46666654
No 80
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=94.74 E-value=0.059 Score=58.90 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=46.8
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~ 289 (946)
..|+|+|++ +|+||+||.|.++..+.......... ..+ +........||++|+|.|..+.||.|-|-
T Consensus 133 l~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~-~~~-~~~lRGr~~TDadG~y~F~TI~Pg~YpiP 200 (281)
T TIGR02438 133 LVFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAP-GIP-EWNLRGTIIADDEGRFEITTMQPAPYQIP 200 (281)
T ss_pred EEEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCC-CCC-CCCCeEEEEeCCCCCEEEEEECCCCcCCC
Confidence 357899995 69999999999997653211111000 011 11235788999999999999999999763
No 81
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.71 E-value=0.081 Score=56.00 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=46.5
Q ss_pred eEEeEEEee-CCCceeceEEEEEECCCCcccCCCC-CCCccC--ccceeeEEEecCCceEEECCcCCeeEEEE
Q 002258 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQG-SGNALG--ERKALCHAVSDADGKFMFKSVPCGQYELV 289 (946)
Q Consensus 221 ~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g-~~~~~~--~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~ 289 (946)
..|+|+|++ +|+||+||.|.++..+......... ....+. +........||++|+|+|..+.||.|.+-
T Consensus 61 i~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~p 133 (220)
T TIGR02422 61 IIVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPWG 133 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccCC
Confidence 467899996 6999999999999875321110000 000011 11125678999999999999999999763
No 82
>smart00095 TR_THY Transthyretin.
Probab=94.60 E-value=0.086 Score=50.38 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=45.8
Q ss_pred EEeEEEeccCCccccCCCCCCcceEEEEEeCC-C---cEEEEEEeCCCceEE--E--ccccCceEEEEEecCCce
Q 002258 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G---DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNLS 194 (946)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~-g---~~v~~ttTd~~G~f~--f--~~l~pG~Y~l~~~~~g~~ 194 (946)
|+=-|++.. .|.|.+|+.|+|+..+ + +.+.+.+||+||+.. + ..+.+|.|+|++.-..|-
T Consensus 6 lTtHVLDt~-------~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf 73 (121)
T smart00095 6 LMVKVLDAV-------RGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFDTKSYW 73 (121)
T ss_pred eEEEEEECC-------CCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccceEEEEEEehhHhH
Confidence 444566652 5899999999998754 3 568999999999995 2 346789999999766654
No 83
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=94.59 E-value=0.04 Score=52.13 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=42.7
Q ss_pred EEeEEEeccCCccccCCCCCCcceEEEEEeCC--C--cEEEEEEeCCCceEE-----EccccCceEEEEEecCCc
Q 002258 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYL-----FKNIIPGKYKLRASHPNL 193 (946)
Q Consensus 128 IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g--~~v~~ttTd~~G~f~-----f~~l~pG~Y~l~~~~~g~ 193 (946)
|+=.|++.. .|.|.+|+.|+|...+ + ..+.+++||+||+.. -..+.+|.|+|...-..|
T Consensus 3 iStHVLDt~-------~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 70 (112)
T PF00576_consen 3 ISTHVLDTT-------TGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDY 70 (112)
T ss_dssp EEEEEEETT-------TTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHH
T ss_pred cEEEEeeCC-------CCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHh
Confidence 444577653 5899999999998544 2 668999999999992 245679999999976555
No 84
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.38 E-value=0.061 Score=58.91 Aligned_cols=55 Identities=29% Similarity=0.582 Sum_probs=44.4
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCC--C------------cEEEEEEeCCCceEEEccccCceEEEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 188 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g------------~~v~~ttTd~~G~f~f~~l~pG~Y~l~~ 188 (946)
..++|+|++. +|+|++||.|.+...+ | ..-....||++|+|+|..+.||.|-+-.
T Consensus 125 l~l~G~V~D~--------~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~YpiP~ 193 (282)
T cd03460 125 LVMHGTVTDT--------DGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGVPP 193 (282)
T ss_pred EEEEEEEECC--------CCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcCCC
Confidence 4578999975 2689999999998554 3 1245789999999999999999998743
No 85
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=94.21 E-value=0.083 Score=57.78 Aligned_cols=55 Identities=24% Similarity=0.465 Sum_probs=45.0
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCC--C------------cEEEEEEeCCCceEEEccccCceEEEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 188 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g------------~~v~~ttTd~~G~f~f~~l~pG~Y~l~~ 188 (946)
..|+|+|++. .|.|++||.|++...+ | ..-...+||++|+|+|.-+.||.|-+-.
T Consensus 121 l~v~G~V~D~--------~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypip~ 189 (277)
T cd03461 121 CFVHGRVTDT--------DGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPIPT 189 (277)
T ss_pred EEEEEEEEcC--------CCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCCC
Confidence 4688999985 2699999999998554 3 2345789999999999999999998744
No 86
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=94.05 E-value=0.17 Score=46.69 Aligned_cols=45 Identities=27% Similarity=0.494 Sum_probs=36.2
Q ss_pred CCCceeceEEEEEE-CCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEEEE
Q 002258 230 QGNPILGVHIYLYS-DDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPH 291 (946)
Q Consensus 230 ~G~Pi~Ga~V~L~~-~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~~ 291 (946)
+|+|++||.|.|++ ..+ ..+++.+||++|..+|+.. ...+.+.+.
T Consensus 24 tg~Pv~ga~V~l~~~~~~----------------~~l~~g~TD~~G~a~~~~~-~~~~~viA~ 69 (97)
T PF11974_consen 24 TGKPVAGAEVELYDSRNG----------------QVLASGKTDADGFASFDST-KKPFLVIAR 69 (97)
T ss_pred CCCccCCCEEEEEECCCC----------------cEeeeeeeCCCceEEecCC-CCCEEEEEE
Confidence 69999999999998 643 2578999999999999987 344555554
No 87
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=94.03 E-value=0.12 Score=59.62 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=50.7
Q ss_pred EEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEEc
Q 002258 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (946)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v~ 206 (946)
.|.|.|.+. +|.||++|+|.+...+ ...+|-.+|-|-=- |+||+|.|.++++||... ..+|.|.
T Consensus 379 GIkG~V~D~--------~G~~I~NA~IsV~gin----Hdv~T~~~GDYWRL-L~PG~y~vta~A~Gy~~~---tk~v~V~ 442 (500)
T KOG2649|consen 379 GIKGLVFDD--------TGNPIANATISVDGIN----HDVTTAKEGDYWRL-LPPGKYIITASAEGYDPV---TKTVTVP 442 (500)
T ss_pred ccceeEEcC--------CCCccCceEEEEecCc----CceeecCCCceEEe-eCCcceEEEEecCCCcce---eeEEEeC
Confidence 488999985 4799999999996433 35677888887644 899999999999999865 2456665
Q ss_pred c
Q 002258 207 F 207 (946)
Q Consensus 207 ~ 207 (946)
.
T Consensus 443 ~ 443 (500)
T KOG2649|consen 443 P 443 (500)
T ss_pred C
Confidence 4
No 88
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=93.92 E-value=0.16 Score=58.57 Aligned_cols=66 Identities=23% Similarity=0.416 Sum_probs=49.0
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v 205 (946)
..|.|.|.+. +|.|+++|+|.+..-+ ...+|.++|.|-=- |.||+|.|.++++||... ...++|
T Consensus 329 ~GikG~V~d~--------~g~~i~~a~i~v~g~~----~~v~t~~~GdywRl-l~pG~y~v~~~a~gy~~~---~~~~~v 392 (405)
T cd03869 329 RGIKGVVRDK--------TGKGIPNAIISVEGIN----HDIRTASDGDYWRL-LNPGEYRVTAHAEGYTSS---TKNCEV 392 (405)
T ss_pred cCceEEEECC--------CCCcCCCcEEEEecCc----cceeeCCCCceEEe-cCCceEEEEEEecCCCcc---cEEEEE
Confidence 3589999886 3689999999986433 23556788887633 899999999999999754 234555
Q ss_pred cc
Q 002258 206 GF 207 (946)
Q Consensus 206 ~~ 207 (946)
..
T Consensus 393 ~~ 394 (405)
T cd03869 393 GY 394 (405)
T ss_pred cC
Confidence 53
No 89
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=93.34 E-value=0.22 Score=47.21 Aligned_cols=57 Identities=37% Similarity=0.500 Sum_probs=39.9
Q ss_pred EeEEEee--CCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEE-----ECCcCCeeEEEEEE
Q 002258 223 IRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFM-----FKSVPCGQYELVPH 291 (946)
Q Consensus 223 v~G~V~~--~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~-----f~~Lp~G~Y~v~~~ 291 (946)
|+=.|.+ .|.|.+|+.|.|+..+. ..+...+..++||+||+.. -..+.+|.|+|+..
T Consensus 3 iStHVLDt~~G~PA~gv~V~L~~~~~------------~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~ 66 (112)
T PF00576_consen 3 ISTHVLDTTTGKPAAGVPVTLYRLDS------------DGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFD 66 (112)
T ss_dssp EEEEEEETTTTEE-TT-EEEEEEEET------------TSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEE
T ss_pred cEEEEeeCCCCCCccCCEEEEEEecC------------CCCcEEEEEEEECCCCcccccccccccccceEEEEEEE
Confidence 3445665 49999999999998741 1123457899999999992 24677999999984
No 90
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=92.55 E-value=0.23 Score=47.00 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=41.5
Q ss_pred EEeEEEcC-CCCeeeceEEEE---cc---EEe--eEeCCCceEEE-----cccCCceEEEEEEeccc
Q 002258 328 VGGRVVDE-NDMGVEGVKILV---DG---HER--SITDRDGYYKL-----DQVTSNRYTIEAVKVHY 380 (946)
Q Consensus 328 V~G~V~d~-~G~pl~ga~V~l---~G---~~~--~~TD~~G~f~~-----~~L~pG~Y~I~a~~~~y 380 (946)
|+=.|+|. .|+|.+|+.|.| ++ +.+ ++||+||+..- +.+.+|.|.|+.....|
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 69 (112)
T cd05822 3 LSTHVLDTATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAY 69 (112)
T ss_pred ceeEEEeCCCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhh
Confidence 34468886 899999999998 22 223 58999999753 45789999999988877
No 91
>COG1470 Predicted membrane protein [Function unknown]
Probab=92.33 E-value=20 Score=41.82 Aligned_cols=55 Identities=27% Similarity=0.424 Sum_probs=44.0
Q ss_pred EEeEEEcCCCCeeeceEEEEccEEeeEeCCCceEEEcccCCceEEEEEEecc-ceecc
Q 002258 328 VGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVH-YKFNK 384 (946)
Q Consensus 328 V~G~V~d~~G~pl~ga~V~l~G~~~~~TD~~G~f~~~~L~pG~Y~I~a~~~~-y~~~~ 384 (946)
..-+++|.+|.|++-+.+. +|+..-.|+..|.-.+ ++.||.|.+...+.+ |.+..
T Consensus 189 ~~l~~vd~~G~gv~~~~v~-~g~e~~ets~~g~~~~-e~t~g~y~~~i~~~g~ye~~~ 244 (513)
T COG1470 189 SKLRLVDDDGAGVPKALVK-DGNESFETSSKGNLEV-EITPGKYVVLIAKKGIYEKKK 244 (513)
T ss_pred EEEEEEccCCCccchheee-cCceeEEeecccceeE-EecCcceEEEeccccceecce
Confidence 4447788899999998775 4555668999999888 999999999998888 55443
No 92
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=92.09 E-value=0.54 Score=43.56 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=38.3
Q ss_pred eEEEeEEEcCCCCeeeceEEEE----c-cEE-----eeEeCCCceEEE--cccCCceEEEEEEeccc
Q 002258 326 FSVGGRVVDENDMGVEGVKILV----D-GHE-----RSITDRDGYYKL--DQVTSNRYTIEAVKVHY 380 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l----~-G~~-----~~~TD~~G~f~~--~~L~pG~Y~I~a~~~~y 380 (946)
..+.-+|.|.+|+||+|..|.+ + +.. .++||++|.+.+ ..-.+|.|+|++...+.
T Consensus 25 ~tltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~ 91 (100)
T PF02369_consen 25 NTLTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGG 91 (100)
T ss_dssp EEEEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTE
T ss_pred EEEEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCc
Confidence 4577789999999999999998 1 221 258999998655 45578999999988763
No 93
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=91.70 E-value=0.38 Score=45.06 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=47.1
Q ss_pred CcEEEeEEEeccCCccccCCCCCCcceEEEEEeCCC----cEEEEEEeCCCceEEE----ccccCceEEEEEecCCc
Q 002258 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG----DLISSVITSSEGSYLF----KNIIPGKYKLRASHPNL 193 (946)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g----~~v~~ttTd~~G~f~f----~~l~pG~Y~l~~~~~g~ 193 (946)
|-.|+-.|++..+ |.|.+||.|.|....+ +.+.+..|+++|+-.. ..+.||.|+++.....|
T Consensus 20 ~~~itahVLd~s~-------GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y 89 (132)
T KOG3006|consen 20 GPPITAHVLDISR-------GSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPY 89 (132)
T ss_pred CCCcEeEEeeccc-------CCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccc
Confidence 3457778888653 7999999999874433 5688999999999753 23679999999865544
No 94
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=91.47 E-value=0.48 Score=45.34 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=41.2
Q ss_pred EeEEEee--CCCceeceEEEEEECC-CCcccCCCCCCCccCccceeeEEEecCCceEE--E--CCcCCeeEEEEEE
Q 002258 223 IRGLVVA--QGNPILGVHIYLYSDD-VGKVDCPQGSGNALGERKALCHAVSDADGKFM--F--KSVPCGQYELVPH 291 (946)
Q Consensus 223 v~G~V~~--~G~Pi~Ga~V~L~~~~-~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~--f--~~Lp~G~Y~v~~~ 291 (946)
|+=.|.+ .|+|-+|+.|.|+..+ +. ....+...+||+||+.. + ..+.+|.|+|++.
T Consensus 9 ittHVLDt~~G~PAaGV~V~L~~~~~~~-------------~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~ 71 (121)
T cd05821 9 LMVKVLDAVRGSPAANVAVKVFKKTADG-------------SWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFD 71 (121)
T ss_pred cEEEEEECCCCccCCCCEEEEEEecCCC-------------ceEEEEEEEECCCCCCCCccCccccCCeeEEEEEe
Confidence 3445665 4999999999998753 11 12357899999999995 2 2456899999984
No 95
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=91.19 E-value=0.34 Score=50.27 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=42.3
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEEEeCC--C--------c-----------EEEEEEeCCCceEEEccccCceE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--------D-----------LISSVITSSEGSYLFKNIIPGKY 184 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~--g--------~-----------~v~~ttTd~~G~f~f~~l~pG~Y 184 (946)
+.+.|+|++.. ++.|++||.|.+...+ | . .-....||++|+|+|.-+.||.|
T Consensus 27 l~l~g~V~D~~-------~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y 99 (188)
T cd03457 27 LTLDLQVVDVA-------TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWY 99 (188)
T ss_pred EEEEEEEEeCC-------CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCC
Confidence 45789998742 3589999999998544 2 0 12367899999999999999999
Q ss_pred EEE
Q 002258 185 KLR 187 (946)
Q Consensus 185 ~l~ 187 (946)
.-+
T Consensus 100 ~gR 102 (188)
T cd03457 100 PGR 102 (188)
T ss_pred CCC
Confidence 643
No 96
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=91.18 E-value=0.59 Score=44.21 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=41.0
Q ss_pred eEEEee--CCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEE----CCcCCeeEEEEEE
Q 002258 224 RGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMF----KSVPCGQYELVPH 291 (946)
Q Consensus 224 ~G~V~~--~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f----~~Lp~G~Y~v~~~ 291 (946)
+=.|.+ .|.|-+|+.|.|+..++. .....+...+||+||+..- ..+.+|.|+|++.
T Consensus 4 StHVLDt~~G~PAagv~V~L~~~~~~------------~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~ 65 (113)
T cd05469 4 MVKVLDAVRGSPAANVAIKVFRKTAD------------GSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFD 65 (113)
T ss_pred eEEEEeCCCCccCCCCEEEEEEecCC------------CceEEEEEEEECCCCCccCccccccccceEEEEEEe
Confidence 335665 499999999999986420 0123578999999999952 3567899999984
No 97
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=90.83 E-value=0.56 Score=41.62 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=39.9
Q ss_pred eEEEeeCCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEEE
Q 002258 224 RGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVP 290 (946)
Q Consensus 224 ~G~V~~~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~ 290 (946)
+|++.=.++|++++.|.|+..+.. .....+..+.||++|+|.+.+=...-+.+.+
T Consensus 1 ~G~L~C~~~P~~~~~V~L~e~d~~------------~~Ddll~~~~Td~~G~F~l~G~~~e~~~i~P 55 (80)
T PF01060_consen 1 KGQLMCGGKPAKNVKVKLWEDDYF------------DPDDLLDETKTDSDGNFELSGSTNEFTTIEP 55 (80)
T ss_pred CeEEEeCCccCCCCEEEEEECCCC------------CCCceeEEEEECCCceEEEEEEccCCccccE
Confidence 377777899999999999998631 0122578899999999999865544344433
No 98
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=90.64 E-value=0.91 Score=41.27 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=41.8
Q ss_pred EEEeEEEcCCCCeeeceEEEE--ccE-------EeeEeCCCceEEE--cccCCceEEEEEEeccce
Q 002258 327 SVGGRVVDENDMGVEGVKILV--DGH-------ERSITDRDGYYKL--DQVTSNRYTIEAVKVHYK 381 (946)
Q Consensus 327 sV~G~V~d~~G~pl~ga~V~l--~G~-------~~~~TD~~G~f~~--~~L~pG~Y~I~a~~~~y~ 381 (946)
.|.-+|+|.+|.|++++.|.+ +|. ....||.+|+..+ ..-.+|.|+|+++.+++.
T Consensus 21 ~i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 21 TLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred EEEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 566689999999999999887 322 2248999998665 344679999999987743
No 99
>smart00095 TR_THY Transthyretin.
Probab=90.54 E-value=0.7 Score=44.26 Aligned_cols=56 Identities=14% Similarity=0.310 Sum_probs=41.2
Q ss_pred EeEEEee--CCCceeceEEEEEECC-CCcccCCCCCCCccCccceeeEEEecCCceEE--E--CCcCCeeEEEEEE
Q 002258 223 IRGLVVA--QGNPILGVHIYLYSDD-VGKVDCPQGSGNALGERKALCHAVSDADGKFM--F--KSVPCGQYELVPH 291 (946)
Q Consensus 223 v~G~V~~--~G~Pi~Ga~V~L~~~~-~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~--f--~~Lp~G~Y~v~~~ 291 (946)
|+=.|.+ .|.|.+|+.|.|+..+ +. ....+...+||+||+.. + ..+.+|.|+|++.
T Consensus 6 lTtHVLDt~~G~PAagv~V~L~~~~~~~-------------~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~ 68 (121)
T smart00095 6 LMVKVLDAVRGSPAVNVAVKVFKKTEEG-------------TWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFD 68 (121)
T ss_pred eEEEEEECCCCccCCCCEEEEEEeCCCC-------------ceEEEEEEecCCCccccCccCcccccceEEEEEEe
Confidence 3445665 4999999999998853 11 12357899999999995 2 2466899999984
No 100
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=90.52 E-value=0.68 Score=41.08 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=32.0
Q ss_pred CCCCcceEEEEEeCCC----cEEEEEEeCCCceEEEccccCc
Q 002258 145 GGGPSNVNVELLSHSG----DLISSVITSSEGSYLFKNIIPG 182 (946)
Q Consensus 145 g~plaGv~V~L~~~~g----~~v~~ttTd~~G~f~f~~l~pG 182 (946)
+.|.+++.|+|++.+. ..+.++.||++|+|.+.+-...
T Consensus 8 ~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~~e 49 (80)
T PF01060_consen 8 GKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGSTNE 49 (80)
T ss_pred CccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEccC
Confidence 6899999999998763 6789999999999999864433
No 101
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=90.16 E-value=1.3 Score=41.07 Aligned_cols=62 Identities=27% Similarity=0.247 Sum_probs=39.7
Q ss_pred cEEEeEEEeccCCccccCCCCCCcceEEEE--EeCCCcEEE---EEEeCCCceEEEc--cccCceEEEEEecCCceE
Q 002258 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVEL--LSHSGDLIS---SVITSSEGSYLFK--NIIPGKYKLRASHPNLSV 195 (946)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~g~plaGv~V~L--~~~~g~~v~---~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~ 195 (946)
..+.-+|.+.. |.|++|+.|.+ ....+.... ..+||++|.+.+. .-.+|.|.|.++-.+...
T Consensus 25 ~tltatV~D~~--------gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~~ 93 (100)
T PF02369_consen 25 NTLTATVTDAN--------GNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGST 93 (100)
T ss_dssp EEEEEEEEETT--------SEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEEE
T ss_pred EEEEEEEEcCC--------CCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCcce
Confidence 34566787753 68999999999 444443322 4899999998765 447899999998776543
No 102
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=89.93 E-value=1.1e+02 Score=43.53 Aligned_cols=122 Identities=12% Similarity=0.074 Sum_probs=60.5
Q ss_pred eEEEEE-EcCeeEEEEEEeeCCCCCCceEEcCCeEEEEEcCcccceEEE--EeeeEEEEEEEecc--CCCCceEEEEEEc
Q 002258 442 GNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFS--QALVNVLGNVACKE--RCGPLVTVTLMRL 516 (946)
Q Consensus 442 G~F~f~-l~pG~Y~v~~~~~~~e~~~G~~~~p~~~~V~V~~pv~~i~F~--q~~a~V~G~V~~~~--~~~~~~~VtL~~~ 516 (946)
-.+++. ..||.|.|++.... +-|+ ......++|-.|+.++.+. ...+.+...|.... ..++++..+...-
T Consensus 1660 k~~~vt~~~pG~Y~VtL~aSN---~vG~--~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~g 1734 (2740)
T TIGR00864 1660 KGAKLNPLEAGPCDIFLQAAN---LLGQ--ATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLE 1734 (2740)
T ss_pred ceeEEecCCCceEEEEEEEee---cccc--eeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEEC
Confidence 357888 99999999999853 3354 3344555555566666443 12222211111100 0111122222111
Q ss_pred CcccccCCcceeEEEeeCCccEEEcccCCccEEEEEEeeccccccCCCCeeEeeeeEEEEeecCccccceE
Q 002258 517 GQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEF 587 (946)
Q Consensus 517 ~~~~~~~~~~~~~~~t~~~G~f~f~~v~PG~Y~v~v~~~~~~~~~~~~~~cw~~~~~~v~V~~~~~~~i~f 587 (946)
++. ...++...-...|.. ||.|.|.+... + ...+...++.|.|. +.+.|+.|
T Consensus 1735 dG~--------s~~~s~p~~tHtf~~--~G~y~VtVta~-------N-~vss~~~s~~V~Vq-epV~GL~i 1786 (2740)
T TIGR00864 1735 EGD--------DLETSEPFMSHSFPS--AGLHLVTMKAF-------N-ELGSANASEEVDVQ-EPISGLKI 1786 (2740)
T ss_pred CCC--------CcccCCCceEEEccC--CceEEEEEEEE-------c-cccccceeEEEEEE-eccccceE
Confidence 110 011112223566776 99999999864 2 23455566777664 33444443
No 103
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=89.87 E-value=0.91 Score=47.10 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=44.5
Q ss_pred EEeEEEee--CCCceeceEEEEEECCCCcccCCCCCCC-c-----cCccc-eeeEEEecCCceEEECCcCCeeEEE
Q 002258 222 EIRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGN-A-----LGERK-ALCHAVSDADGKFMFKSVPCGQYEL 288 (946)
Q Consensus 222 ~v~G~V~~--~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~-~-----~~~g~-~~~~~~TD~~G~f~f~~Lp~G~Y~v 288 (946)
.+.|+|.+ .++||+||.|.++..+... +-.+... . +.+.. ......||++|+|+|..+-||-|.-
T Consensus 28 ~l~g~V~D~~~c~Pv~~a~VdiWh~da~G--~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~g 101 (188)
T cd03457 28 TLDLQVVDVATCCPPPNAAVDIWHCDATG--VYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYPG 101 (188)
T ss_pred EEEEEEEeCCCCccCCCeEEEEecCCCCC--CCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCCC
Confidence 57889987 3799999999999765321 1111110 0 01111 3456899999999999999999863
No 104
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=89.58 E-value=0.76 Score=38.65 Aligned_cols=41 Identities=20% Similarity=0.529 Sum_probs=24.0
Q ss_pred eeCCc-cEEEcccCCccEEEEEEeeccccccCCCCeeEeeeeEEEEe
Q 002258 532 TDDSD-QFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDV 577 (946)
Q Consensus 532 t~~~G-~f~f~~v~PG~Y~v~v~~~~~~~~~~~~~~cw~~~~~~v~V 577 (946)
..... .+.|.+|+||+|+|.+...+. .+.|-....++.|.|
T Consensus 24 ~~~~~~~~~~~~L~~G~Y~l~V~a~~~-----~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 24 LGSYSNSISYTNLPPGKYTLEVRAKDN-----NGKWSSDEKSLTITI 65 (66)
T ss_dssp ESSTS-EEEEES--SEEEEEEEEEEET-----TS-B-SS-EEEEEEE
T ss_pred CCCCcEEEEEEeCCCEEEEEEEEEECC-----CCCcCcccEEEEEEE
Confidence 33444 999999999999999986521 233444445555554
No 105
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=88.41 E-value=0.87 Score=42.86 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=42.2
Q ss_pred EEEeEEEcC-CCCeeeceEEEE---ccEE---e--eEeCCCceEEE-----cccCCceEEEEEEeccc
Q 002258 327 SVGGRVVDE-NDMGVEGVKILV---DGHE---R--SITDRDGYYKL-----DQVTSNRYTIEAVKVHY 380 (946)
Q Consensus 327 sV~G~V~d~-~G~pl~ga~V~l---~G~~---~--~~TD~~G~f~~-----~~L~pG~Y~I~a~~~~y 380 (946)
.++=.|+|. .|+|-+|++|.| +|.. + +.||+||+-.. +.+.+|.|.+.+....|
T Consensus 10 ~LTTHVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdY 77 (124)
T COG2351 10 RLTTHVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDY 77 (124)
T ss_pred eeeeeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchh
Confidence 455578886 799999999998 4431 2 58999999773 45678999999988776
No 106
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=87.85 E-value=2.1 Score=45.85 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=49.1
Q ss_pred ceEEeEEEeeCCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeEEEEEEEcCC
Q 002258 220 GYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGE 295 (946)
Q Consensus 220 g~~v~G~V~~~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y~v~~~~~~~ 295 (946)
|-.+.|+|+.+|+||+||+|.+.-..-.... +...............||++|.|.|--+..|-+.+.+.+.++
T Consensus 171 ge~f~~~vl~~GkPv~nA~V~v~~~n~~~~d---~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~~~ 243 (264)
T COG5266 171 GEVFRGKVLDNGKPVPNATVEVEFDNIDTKD---NRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHKTD 243 (264)
T ss_pred CCeEEEEEEECCccCCCcEEEEEEecccccc---cccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeeccCC
Confidence 4467889999999999999998733211000 000011111123567899999999999999999999865543
No 107
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=86.39 E-value=2.4 Score=45.35 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=46.6
Q ss_pred CcEEEeEEEeccCCccccCCCCCCcceEEEEE-------e---CCC---cEEEEEEeCCCceEEEccccCceEEEEEecC
Q 002258 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELL-------S---HSG---DLISSVITSSEGSYLFKNIIPGKYKLRASHP 191 (946)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~-------~---~~g---~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~ 191 (946)
|-.+.|+|+.. |.|++|++|.+. + ..+ .......||++|.|+|-.+..|.+-+.+.|.
T Consensus 171 ge~f~~~vl~~---------GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~ 241 (264)
T COG5266 171 GEVFRGKVLDN---------GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHK 241 (264)
T ss_pred CCeEEEEEEEC---------CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeecc
Confidence 45678899874 699999999986 1 112 2235788999999999999999999998775
Q ss_pred C
Q 002258 192 N 192 (946)
Q Consensus 192 g 192 (946)
+
T Consensus 242 ~ 242 (264)
T COG5266 242 T 242 (264)
T ss_pred C
Confidence 4
No 108
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=86.01 E-value=2 Score=40.16 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=34.5
Q ss_pred cccceEEEEEeCCCCEEEEEEeCC-Cc-EEE--cCCCCCccEEEEEEcCCC-cc
Q 002258 50 DYSHVTVELRTLDGLVKESTQCAP-NG-YYF--IPVYDKGSFVIKVNGPEG-WS 98 (946)
Q Consensus 50 ~~sgv~V~L~~~~G~~~~~t~t~~-nG-~y~--ip~l~~G~Y~l~v~~P~G-~~ 98 (946)
++..|+|++.+.+|.++++-.... .+ .+. ++.+++|.|.|++....| |.
T Consensus 46 ~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g~~l 99 (106)
T PF11589_consen 46 PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNGTYL 99 (106)
T ss_dssp --SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC-EE
T ss_pred CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCCCEE
Confidence 456899999999999998876544 33 444 777899999999999887 64
No 109
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=85.19 E-value=2.7 Score=36.00 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=36.6
Q ss_pred CCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCCceEEeeccEEEEEccCCe
Q 002258 147 GPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENG 210 (946)
Q Consensus 147 plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~v~v~~~~~ 210 (946)
-++||.|.+ ||..+. . .-..+..|++|.|.|++.++||... ...|.+..+..
T Consensus 9 ~p~gA~V~v---dg~~~G--~----tp~~~~~l~~G~~~v~v~~~Gy~~~---~~~v~v~~~~~ 60 (71)
T PF08308_consen 9 NPSGAEVYV---DGKYIG--T----TPLTLKDLPPGEHTVTVEKPGYEPY---TKTVTVKPGET 60 (71)
T ss_pred ECCCCEEEE---CCEEec--c----CcceeeecCCccEEEEEEECCCeeE---EEEEEECCCCE
Confidence 467899887 354444 2 2346777999999999999999754 24666665543
No 110
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=84.78 E-value=53 Score=34.14 Aligned_cols=123 Identities=19% Similarity=0.345 Sum_probs=70.0
Q ss_pred CCCCcceEEEEEeCCCc-EEEEEEeCCCc-eEEEcccc----Cc---eEEEEEec-CCceEEeeccEEEEEccCCeeeee
Q 002258 145 GGGPSNVNVELLSHSGD-LISSVITSSEG-SYLFKNII----PG---KYKLRASH-PNLSVEVRGSTEVELGFENGEVDD 214 (946)
Q Consensus 145 g~plaGv~V~L~~~~g~-~v~~ttTd~~G-~f~f~~l~----pG---~Y~l~~~~-~g~~~~~~~~~~v~v~~~~~~v~~ 214 (946)
+..+.-++|.|+..+.. .-.-..+.+++ .|.|.+|| -| .|+|.+.. |+|...+.+. .|+-...+
T Consensus 19 ~~RP~sI~v~L~~ng~~~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~~Y~~~v~g~-tITNt~~~----- 92 (187)
T cd00222 19 KKRPAKISVQLLANGEKYVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVPDYETPIIGE-TITNKYIN----- 92 (187)
T ss_pred CCCCCEEEEEEEeCCeeeeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCCCcEEEeccc-EEEEeecC-----
Confidence 45677899999864322 12234455555 69999998 56 79998854 7887654332 22211111
Q ss_pred eeeccceEEeEE-EeeC---CCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEe-cCCceEEECCcCCe-----
Q 002258 215 IFFAPGYEIRGL-VVAQ---GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVS-DADGKFMFKSVPCG----- 284 (946)
Q Consensus 215 ~l~v~g~~v~G~-V~~~---G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~T-D~~G~f~f~~Lp~G----- 284 (946)
..-.+|++. +..+ |..-.-++|.|+.... .. + .....+ +.+=.|.|.+||..
T Consensus 93 ---~~~t~i~v~K~W~d~~~~~rP~sI~V~L~adG~-~~------------~--~~~~l~~~n~W~~tf~~Lp~y~~Gk~ 154 (187)
T cd00222 93 ---KETTSFSGKKIWKNDTAGQRPEEIQVQLLQDGQ-AT------------G--KTKIVTKSNDWTYTFKDLPKYDTGNE 154 (187)
T ss_pred ---CceEEEEEEEEEcCCCCCCCCceEEEEEEeCCE-Ec------------c--eEEEeecCCCcEEEecCCccccCCCE
Confidence 012345554 3332 3333568999998632 10 0 012223 34678999999975
Q ss_pred -eEEEEEE
Q 002258 285 -QYELVPH 291 (946)
Q Consensus 285 -~Y~v~~~ 291 (946)
.|+|.+.
T Consensus 155 i~YtV~E~ 162 (187)
T cd00222 155 YKYSVEEV 162 (187)
T ss_pred EeEEEEEe
Confidence 5888773
No 111
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=84.72 E-value=9.6 Score=40.67 Aligned_cols=83 Identities=17% Similarity=0.328 Sum_probs=46.0
Q ss_pred eeEEEeeEEEeEEEcC-CCCee----eceEEEE--cc----EE-eeEeCCCceEEEcccCCceEEEEEEe-cc---ceec
Q 002258 320 KFQVTGFSVGGRVVDE-NDMGV----EGVKILV--DG----HE-RSITDRDGYYKLDQVTSNRYTIEAVK-VH---YKFN 383 (946)
Q Consensus 320 ~f~~~g~sV~G~V~d~-~G~pl----~ga~V~l--~G----~~-~~~TD~~G~f~~~~L~pG~Y~I~a~~-~~---y~~~ 383 (946)
++..+...+.|+|+|. +|+|| -|+++.| .| .. -.....||.|+=.-|=.|+|.|.... +. +..+
T Consensus 16 NYD~P~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~d 95 (222)
T PF12866_consen 16 NYDEPDSTLTGRIIDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPVD 95 (222)
T ss_dssp ------EEEEEEEEECCTTEE----STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE-
T ss_pred CCcCCCceEEEEEEEeecCCeeeecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccCCCc
Confidence 4666667899999995 66554 4888888 22 12 24789999997778999999999944 33 2333
Q ss_pred ceeeEEEccCcceeceEEEeee
Q 002258 384 KLKEYMVLPNMASIADIKAISY 405 (946)
Q Consensus 384 ~~~~v~v~p~~~~i~dI~~~~~ 405 (946)
+. .+.+. .....|+.+..|
T Consensus 96 ti-~v~i~--G~t~~d~eVtPY 114 (222)
T PF12866_consen 96 TI-EVDIK--GNTTQDFEVTPY 114 (222)
T ss_dssp -E-EEEES--SCEEEEEEE-BS
T ss_pred cE-EEEec--CceEEeEEeeee
Confidence 32 23333 334446665554
No 112
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=84.34 E-value=56 Score=34.00 Aligned_cols=127 Identities=20% Similarity=0.365 Sum_probs=73.5
Q ss_pred cccceEEEEEeCCCCE-EE-EEEeCCCc-EEE---cCCCC-Cc---cEEEEEEcCCCcccCCceeEEEEcCCCcCCCcee
Q 002258 50 DYSHVTVELRTLDGLV-KE-STQCAPNG-YYF---IPVYD-KG---SFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDI 119 (946)
Q Consensus 50 ~~sgv~V~L~~~~G~~-~~-~t~t~~nG-~y~---ip~l~-~G---~Y~l~v~~P~G~~~~p~~v~v~vd~~~~s~~~di 119 (946)
-.+-|+|+|+. +|.. .. .+.+++|+ .|. +|.|+ .| .|+|+..+-+||. ..+++. .|
T Consensus 21 RP~sI~v~L~~-ng~~~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~~Y~-------~~v~g~------tI 86 (187)
T cd00222 21 RPAKISVQLLA-NGEKYVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVPDYE-------TPIIGE------TI 86 (187)
T ss_pred CCCEEEEEEEe-CCeeeeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCCCcE-------EEeccc------EE
Confidence 34679999984 5543 22 23444454 244 45554 56 7999777766664 223332 22
Q ss_pred eEEEe---CcEEEeE-EEeccCCccccCCCCCCcceEEEEEeCCCcEEEE--EEe-CCCceEEEccccCc------eEEE
Q 002258 120 NFRFT---GFTLLGR-VVGAIGGESCLDKGGGPSNVNVELLSHSGDLISS--VIT-SSEGSYLFKNIIPG------KYKL 186 (946)
Q Consensus 120 nf~~~---g~~IsG~-V~~~~g~~s~~~~g~plaGv~V~L~~~~g~~v~~--ttT-d~~G~f~f~~l~pG------~Y~l 186 (946)
.-... -..|++. +-.. + ..+..+.-++|+|+.. |..... ..+ +.+=.|.|.+||-. .|+|
T Consensus 87 TNt~~~~~~t~i~v~K~W~d-~-----~~~~rP~sI~V~L~ad-G~~~~~~~~l~~~n~W~~tf~~Lp~y~~Gk~i~YtV 159 (187)
T cd00222 87 TNKYINKETTSFSGKKIWKN-D-----TAGQRPEEIQVQLLQD-GQATGKTKIVTKSNDWTYTFKDLPKYDTGNEYKYSV 159 (187)
T ss_pred EEeecCCceEEEEEEEEEcC-C-----CCCCCCceEEEEEEeC-CEEcceEEEeecCCCcEEEecCCccccCCCEEeEEE
Confidence 22222 2445554 3332 1 1245677899999864 544322 223 34568999999876 7999
Q ss_pred EEe--cCCceEEe
Q 002258 187 RAS--HPNLSVEV 197 (946)
Q Consensus 187 ~~~--~~g~~~~~ 197 (946)
.+. .+||....
T Consensus 160 ~E~~v~~GY~~~~ 172 (187)
T cd00222 160 EEVTVVDGYKTTY 172 (187)
T ss_pred EEecCCCCcEeEe
Confidence 986 36887653
No 113
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=84.21 E-value=2.7 Score=39.55 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=43.7
Q ss_pred EEEeEEEcCCCCeeeceEEEE-c------------cEEeeEeCCCceEEEcccCCceEEEEEEecc
Q 002258 327 SVGGRVVDENDMGVEGVKILV-D------------GHERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (946)
Q Consensus 327 sV~G~V~d~~G~pl~ga~V~l-~------------G~~~~~TD~~G~f~~~~L~pG~Y~I~a~~~~ 379 (946)
.|+=.|.+.+|+|+.|++|+| . |..+..||.+|.+..++..-|+|.|-..+.+
T Consensus 43 pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 43 PVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred cEEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCC
Confidence 344467888999999999998 1 3344799999999999999999999887765
No 114
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=82.53 E-value=2.6 Score=35.37 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=17.5
Q ss_pred ecCCc-eEEECCcCCeeEEEEEEEcC
Q 002258 270 SDADG-KFMFKSVPCGQYELVPHYKG 294 (946)
Q Consensus 270 TD~~G-~f~f~~Lp~G~Y~v~~~~~~ 294 (946)
..... .+.|.+||||+|+|.+....
T Consensus 24 ~~~~~~~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 24 LGSYSNSISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp ESSTS-EEEEES--SEEEEEEEEEEE
T ss_pred CCCCcEEEEEEeCCCEEEEEEEEEEC
Confidence 33444 99999999999999986443
No 115
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=81.87 E-value=2.4 Score=38.92 Aligned_cols=32 Identities=31% Similarity=0.644 Sum_probs=24.3
Q ss_pred CCeeeceEEEE---c--cE----EeeEeCCCceEEEcccCCc
Q 002258 337 DMGVEGVKILV---D--GH----ERSITDRDGYYKLDQVTSN 369 (946)
Q Consensus 337 G~pl~ga~V~l---~--G~----~~~~TD~~G~f~~~~L~pG 369 (946)
..||+||+|.| + +. ..++||++|.|.+ .|+..
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i-~l~~~ 58 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSI-ELPSD 58 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEE-EecCc
Confidence 57999999999 3 21 1269999999999 66544
No 116
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=77.94 E-value=8.5 Score=36.35 Aligned_cols=74 Identities=24% Similarity=0.219 Sum_probs=50.9
Q ss_pred cCCCceeeEEEeCcEEEeEEEeccCCccccCCCCCCcceEEEEEe--CCC-c-----EEEEEEeCCCceEEEccccCceE
Q 002258 113 CNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLS--HSG-D-----LISSVITSSEGSYLFKNIIPGKY 184 (946)
Q Consensus 113 ~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~--~~g-~-----~v~~ttTd~~G~f~f~~l~pG~Y 184 (946)
|..+.+-++.-....|+=.|.++ .+.|+.|++|+|.. ++. + ...-..||.+|.+...+..-|+|
T Consensus 29 c~~~~es~~~k~~~pVT~hVen~--------e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y 100 (131)
T PF10794_consen 29 CIANNESAASKVVNPVTFHVENA--------EGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKY 100 (131)
T ss_pred ccccchhhhceecccEEEEEecC--------CCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceE
Confidence 44443434443344455556655 26999999999986 221 1 13447899999999999999999
Q ss_pred EEEEecCCce
Q 002258 185 KLRASHPNLS 194 (946)
Q Consensus 185 ~l~~~~~g~~ 194 (946)
.|...+.+-.
T Consensus 101 ~v~l~n~e~~ 110 (131)
T PF10794_consen 101 IVFLPNGETQ 110 (131)
T ss_pred EEEEcCCCce
Confidence 9998776644
No 117
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=77.80 E-value=2.7 Score=39.56 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=43.3
Q ss_pred EeeEEEeEEEcC-CCCeeeceEEEE---ccE----Ee--eEeCCCceEEE----cccCCceEEEEEEeccc
Q 002258 324 TGFSVGGRVVDE-NDMGVEGVKILV---DGH----ER--SITDRDGYYKL----DQVTSNRYTIEAVKVHY 380 (946)
Q Consensus 324 ~g~sV~G~V~d~-~G~pl~ga~V~l---~G~----~~--~~TD~~G~f~~----~~L~pG~Y~I~a~~~~y 380 (946)
++..|+-.|+|. .|.|.+|+.|.+ ++. .+ ..|++||+-.. ..|.||+|+++.....|
T Consensus 19 ~~~~itahVLd~s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y 89 (132)
T KOG3006|consen 19 PGPPITAHVLDISRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPY 89 (132)
T ss_pred CCCCcEeEEeecccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccc
Confidence 345677789986 799999999987 332 22 47999998764 34679999999887766
No 118
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=76.27 E-value=1.2e+02 Score=34.98 Aligned_cols=45 Identities=33% Similarity=0.456 Sum_probs=29.3
Q ss_pred CceEEEEE----EcCeeEEEEEEeeCCCCCCceEEcC-CeEEEEEc-CcccceEEEEe
Q 002258 440 NNGNFCFE----VPPGEYRLSAMAATPESSSGILFLP-PYADVVVK-SPLLNIEFSQA 491 (946)
Q Consensus 440 ~~G~F~f~----l~pG~Y~v~~~~~~~e~~~G~~~~p-~~~~V~V~-~pv~~i~F~q~ 491 (946)
.||.|+-. .+||.|++.+.... +. |.- .+++|.|. .|+. ++|.|.
T Consensus 169 ~DGvFT~~l~l~~~~G~Y~~~v~~~n-----~v-F~R~~~q~v~V~p~Pi~-~~~~~~ 219 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPGEYRPTYQSRN-----PV-FLREVEQPVLVYPLPVS-YTVIQS 219 (374)
T ss_pred CCceEEEEeeccCCCceEEEEEEEcC-----ce-EEEEEEEeEEEECCCee-EEEEcc
Confidence 68888765 68999999998742 32 332 24566773 5553 666653
No 119
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=75.60 E-value=7.2 Score=41.31 Aligned_cols=70 Identities=14% Similarity=0.378 Sum_probs=50.5
Q ss_pred CccEEEEEEcCCCcccCCceeEEEEcC---CCcCCC--ceeeEEEeCcEEEeEEEeccCCccccCCCCCCcceEEEEEeC
Q 002258 84 KGSFVIKVNGPEGWSWNPDKVAVTVDD---TGCNGN--EDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSH 158 (946)
Q Consensus 84 ~G~Y~l~v~~P~G~~~~p~~v~v~vd~---~~~s~~--~dinf~~~g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~ 158 (946)
.=-|++.+..|+.|..+|.......|. ...... ....|.++..-|+|.-.+.. +|.|+.|++++|...
T Consensus 126 ~~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~~~~~v~a~y~Le~iLieG~~~d~~-------~~~pp~Glql~L~~~ 198 (211)
T PF06427_consen 126 SPLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLSSGTTVEAVYELESILIEGHARDIT-------TGSPPRGLQLQLGTE 198 (211)
T ss_pred CceEEecCCCCCceEEEEeecCcCCCceecccCCCCceEEEEEEEeeEEEEeEEeecC-------CCCCCCCcEEEEecC
Confidence 567888999999999887654433333 112222 46678889999999987752 478999999999865
Q ss_pred CC
Q 002258 159 SG 160 (946)
Q Consensus 159 ~g 160 (946)
++
T Consensus 199 ~~ 200 (211)
T PF06427_consen 199 NG 200 (211)
T ss_pred CC
Confidence 54
No 120
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=75.31 E-value=8.1 Score=35.42 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=31.0
Q ss_pred CCCCcceEEEEEeCC--C--cEEEEEEeCCCceEEEccccCceEEE
Q 002258 145 GGGPSNVNVELLSHS--G--DLISSVITSSEGSYLFKNIIPGKYKL 186 (946)
Q Consensus 145 g~plaGv~V~L~~~~--g--~~v~~ttTd~~G~f~f~~l~pG~Y~l 186 (946)
..|++||+|.|.=.+ + .....++||++|.|++. |+...+..
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~-l~~~~~~~ 62 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIE-LPSDPGSS 62 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEE-ecCccccc
Confidence 479999999998444 2 35678999999999998 65543333
No 121
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.66 E-value=77 Score=40.63 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=78.9
Q ss_pred ceEEeEEEee--C----CCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeE-EEEEEE
Q 002258 220 GYEIRGLVVA--Q----GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQY-ELVPHY 292 (946)
Q Consensus 220 g~~v~G~V~~--~----G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y-~v~~~~ 292 (946)
++.++|-++. . ++++.+..+.+.... ...++..+. ....||..|.-.++.|.|=.+ +|...-
T Consensus 651 ~~~~sGgiv~h~~Gvt~s~~~~dTfalV~apg---------a~gv~V~~~--~~~~Td~~G~avvP~lspY~~n~v~lD~ 719 (835)
T COG3188 651 NASVSGGVVAHSGGVTLSQPLGDTFALVDAPG---------AAGVRVNNQ--TGVRTDRRGYAVVPYLTPYRENRVSLDP 719 (835)
T ss_pred eEEeeeeEEEECCceEecCCCCCeEEEEECCC---------CCCcEEecC--CCcEEcCCCcEeccCcccceeceEEEcc
Confidence 3456666552 2 467766655544332 111221111 367899999999998886433 333311
Q ss_pred cCCceEEEecCceEEEEEeccceeeeceeEE-EeeEEEeEEEcCCCCeee-ceEEEEccE--EeeEeCCCceEEEcccCC
Q 002258 293 KGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVKILVDGH--ERSITDRDGYYKLDQVTS 368 (946)
Q Consensus 293 ~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-ga~V~l~G~--~~~~TD~~G~f~~~~L~p 368 (946)
..=....++.-....+....+.+... .|.. .+..+--++.+++|+||+ ||.|+.++. .....+.+|..-|++|++
T Consensus 720 ~~Lp~dvel~~~~~~v~Pt~GAvv~~-~F~t~~g~~~li~l~~~dG~~lPfGa~v~~~~~~~~~g~Vg~~G~vyl~gl~~ 798 (835)
T COG3188 720 NNLPDDVELENTVQNVVPTEGAVVLA-DFDTRIGYRALITLRRADGSPLPFGAEVTDEGGGQNVGIVGDDGQVYLRGLPP 798 (835)
T ss_pred ccCCCceEecccEEEEEEcCCeEEEE-EEeeeceeEEEEEEECCCCCcCCCceEEEECCCceEEEEEecCCeEEEecCCC
Confidence 11000111222223333333433332 3543 244556667778898886 788888544 678999999999999988
Q ss_pred ce
Q 002258 369 NR 370 (946)
Q Consensus 369 G~ 370 (946)
+.
T Consensus 799 ~~ 800 (835)
T COG3188 799 KG 800 (835)
T ss_pred CC
Confidence 65
No 122
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=72.82 E-value=47 Score=42.69 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=65.3
Q ss_pred EEecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ceE
Q 002258 268 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GVK 344 (946)
Q Consensus 268 ~~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga~ 344 (946)
..||..|.-.+++|.|=. -+|......-+...++.-....+....+.+... .|.+. +..+--++.+++|+|+| |+.
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~v-~F~~~~g~~~ll~l~~~~G~~lP~Ga~ 776 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRA-RFDTRVGYRVLMSLKQANGNAVPFGAT 776 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEEcCCCCcCCccEE
Confidence 689999999999998742 334331111111112222223333333433332 35542 34555567888999998 888
Q ss_pred EEE---ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 345 ILV---DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 345 V~l---~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
|.+ +++.+.....+|.--+.++++ |+.+|+-
T Consensus 777 V~~~~~~~~~~g~Vg~~G~vyl~gl~~~~~l~v~w 811 (842)
T PRK15207 777 ATLIDTTKEASSIVGEEGQLYISGMPEEGELQVSW 811 (842)
T ss_pred EEecCCCCceEEEECCCCEEEEEcCCCCceEEEEE
Confidence 887 344568999999999989986 5665554
No 123
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=72.81 E-value=16 Score=38.93 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=33.0
Q ss_pred CCCcceEEEEEeCCCcEEEEEEeC-CCceEEEcc-------ccCceEEEEEec
Q 002258 146 GGPSNVNVELLSHSGDLISSVITS-SEGSYLFKN-------IIPGKYKLRASH 190 (946)
Q Consensus 146 ~plaGv~V~L~~~~g~~v~~ttTd-~~G~f~f~~-------l~pG~Y~l~~~~ 190 (946)
.+...|+|++++.+|+++++..-+ ..+.|.+++ +++|.|++.+.+
T Consensus 121 ~~a~~v~v~I~D~~G~vV~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A 173 (223)
T PRK12813 121 ADADKAELVVRDAAGAEVARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVES 173 (223)
T ss_pred CCCceEEEEEEcCCCCEEEEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEE
Confidence 567789999999999988765432 224566664 788999988754
No 124
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=71.59 E-value=11 Score=33.25 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=28.9
Q ss_pred CCCcceEEEEEeCCCcEEEEE--EeCCCceEEE--c-------cccCceEEEEEec
Q 002258 146 GGPSNVNVELLSHSGDLISSV--ITSSEGSYLF--K-------NIIPGKYKLRASH 190 (946)
Q Consensus 146 ~plaGv~V~L~~~~g~~v~~t--tTd~~G~f~f--~-------~l~pG~Y~l~~~~ 190 (946)
.+...++|.+++.+|+++.+. ...+.|.+.| + .+++|.|++++.+
T Consensus 22 ~~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 22 EDADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp SSCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred CcccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 456678999999999887653 2345565444 3 6889999988754
No 125
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=69.77 E-value=21 Score=32.45 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=29.9
Q ss_pred ceEEEEEeCCCcEEEE--E-EeCCCceEEEc-----cccCceEEEEEecC
Q 002258 150 NVNVELLSHSGDLISS--V-ITSSEGSYLFK-----NIIPGKYKLRASHP 191 (946)
Q Consensus 150 Gv~V~L~~~~g~~v~~--t-tTd~~G~f~f~-----~l~pG~Y~l~~~~~ 191 (946)
-+.|+|.+++|..+.. . .++.+|.|++. +.+.|.|+|.+...
T Consensus 37 ~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 37 PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 4677788999966543 3 45899999886 33469999999774
No 126
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=69.55 E-value=38 Score=42.69 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=30.8
Q ss_pred eEEEeEEEcCCCCeeeceEEEEccEEeeEeCCCceEEE
Q 002258 326 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKL 363 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l~G~~~~~TD~~G~f~~ 363 (946)
+++-||+++++|.|+.+|.| +|..- ..||++|.|.+
T Consensus 786 ~~yiGr~~~~~G~~l~~a~I-lN~~~-~~td~~GgF~~ 821 (895)
T PRK15310 786 RLYVGRVLDKDGRPLLDAQP-LNYPF-LSLGPSGRFSL 821 (895)
T ss_pred EEEEEEEECCCCCCccccee-ecCcc-ceecCCCCEEE
Confidence 46889999999999999987 44443 79999999999
No 127
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=69.49 E-value=29 Score=37.22 Aligned_cols=45 Identities=24% Similarity=0.473 Sum_probs=33.9
Q ss_pred CCCcceEEEEEeCCCcEEEEEEe--CCCceEEE---------ccccCceEEEEEec
Q 002258 146 GGPSNVNVELLSHSGDLISSVIT--SSEGSYLF---------KNIIPGKYKLRASH 190 (946)
Q Consensus 146 ~plaGv~V~L~~~~g~~v~~ttT--d~~G~f~f---------~~l~pG~Y~l~~~~ 190 (946)
.+...|+|++++.+|+++++..- -+.|.+.| ..+++|.|++++.+
T Consensus 123 ~~a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A 178 (225)
T PRK06655 123 SAADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASA 178 (225)
T ss_pred CCCcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEE
Confidence 56667999999999998876543 35777777 23788999888753
No 128
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=68.32 E-value=14 Score=33.43 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=43.8
Q ss_pred eeeeeEEEEEEecCCCCCcccceEEE--EecCC--ccc-cccccCCCceEEe--cccCCCceeeEeeeeeE
Q 002258 855 QKLSQISVRIYSKDDAGEPIPSVLLS--LSGDD--GYR-NNSVSWAGGSFHF--DNLFPGNFYLRPLLKLG 918 (946)
Q Consensus 855 ~kL~~i~v~v~d~~~~~~pl~gvlls--Lsg~~--~yR-~n~~t~~~G~~~f--~~L~PG~Y~lr~~~kEy 918 (946)
..+..|.++|.|+. |+|++++.++ ++|+. .+- ....|+++|...+ .+-.+|.|.+++-...+
T Consensus 17 ~d~~~i~v~v~D~~--Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 17 SDAITLTATVTDAN--GNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENG 85 (92)
T ss_pred cccEEEEEEEECCC--CCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCC
Confidence 46889999999986 8999996655 55542 111 2246888997654 46678999998876544
No 129
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=66.31 E-value=72 Score=41.01 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=64.8
Q ss_pred EEEecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ce
Q 002258 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 343 (946)
Q Consensus 267 ~~~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga 343 (946)
...||..|.-.++.|.|=. =+|......-+...++.-....+....+.+.+. .|.+. +..+--++.+++|+||+ |+
T Consensus 695 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~ll~l~~~~G~~lP~Ga 773 (836)
T PRK15223 695 GVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEA-KFHTRIGARALMTLKREDGSAIPFGA 773 (836)
T ss_pred CCEECCCCeEEeCCCCCceeceEEECCCCCCCCEEecCcEEEEEecCCcEEEE-EEEEeeeEEEEEEEECCCCCcCCCCe
Confidence 3789999999999998742 233331111111112222223333333433332 35532 34555567788999886 77
Q ss_pred EEEEc--cEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 344 KILVD--GHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 344 ~V~l~--G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
.|.++ |+.+...+.+|..-+.++++ |+.+|+.
T Consensus 774 ~v~~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~w 808 (836)
T PRK15223 774 QVTVNGQDGSAALVDTDSQVYLTGLADKGELTVKW 808 (836)
T ss_pred EEEecCCCceEEEECCCCEEEEEccCCCceEEEEE
Confidence 77764 46678999999999999986 5665544
No 130
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=65.61 E-value=47 Score=41.91 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=62.5
Q ss_pred CCCCcceEEEEEeCC-CcEEEEEEeCCCceEEE---------ccccC-ceEEEEEecC-----CceEEee---ccEEEEE
Q 002258 145 GGGPSNVNVELLSHS-GDLISSVITSSEGSYLF---------KNIIP-GKYKLRASHP-----NLSVEVR---GSTEVEL 205 (946)
Q Consensus 145 g~plaGv~V~L~~~~-g~~v~~ttTd~~G~f~f---------~~l~p-G~Y~l~~~~~-----g~~~~~~---~~~~v~v 205 (946)
+.|.+|+-|.+...+ +.......--.++.+.+ -.|+| ..|.+.+... ++... . ++....+
T Consensus 692 ~~~~AGviV~v~~~dd~~~~akv~g~~~~~~~~slg~G~~~llPl~~Y~~~~vev~da~~s~~~~~~V-t~g~g~~~~fL 770 (895)
T PRK15310 692 GEPASGMAVNVESEGDEGSSGKVVSVRGSSQPFSLGFGQQSLLLMEGYNATEVTIEDAGVSSQGMAGV-KAGGGSRRYFL 770 (895)
T ss_pred CCCcceEEEEeccCCCccceEEEecccccceeeeccCCceeeEecCCccceeEEEecCCccccceeee-cccCCccceEe
Confidence 578999988876433 22222222211333333 34544 4677776442 22222 2 2333456
Q ss_pred ccCCeee-eeeeeccceEEeEEEee-CCCceeceEEEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEEC
Q 002258 206 GFENGEV-DDIFFAPGYEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFK 279 (946)
Q Consensus 206 ~~~~~~v-~~~l~v~g~~v~G~V~~-~G~Pi~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~ 279 (946)
-.|++.+ +... -.-+.+-|++.+ +|.|+.+|.+. +. +. +.||++|.|.++
T Consensus 771 ~PGnl~~~~v~~-~~~~~yiGr~~~~~G~~l~~a~Il--N~--------------------~~-~~td~~GgF~~d 822 (895)
T PRK15310 771 TPGHLLVHNISA-SMSRLYVGRVLDKDGRPLLDAQPL--NY--------------------PF-LSLGPSGRFSLQ 822 (895)
T ss_pred cCCceEEecccE-EEEEEEEEEEECCCCCCcccceee--cC--------------------cc-ceecCCCCEEEE
Confidence 6677643 2222 123557799886 69999999874 11 23 889999999985
No 131
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=65.35 E-value=93 Score=39.81 Aligned_cols=125 Identities=10% Similarity=0.135 Sum_probs=71.8
Q ss_pred EEEecCCceEEECCcCCe-eEEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ce
Q 002258 267 HAVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 343 (946)
Q Consensus 267 ~~~TD~~G~f~f~~Lp~G-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga 343 (946)
...||..|.-.++ |.|= .-+|......=+...++.-....+....+.+.+. .|.+. +..+--++.+++|+|+| |+
T Consensus 665 ~~~Td~~G~alVP-l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~~-~F~~~~g~~~ll~l~~~~G~~lP~Ga 742 (797)
T PRK15213 665 SGPTDSKGNTVVP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYR-EFKALKVLRYILRVKQKDGRFVPGGS 742 (797)
T ss_pred CcEECCCCeEEEe-CCCceeeeEEECccCCCCCEEecccEEEEEecCCcEEEE-EEEEEeeeEEEEEEEccCCCcCCCCe
Confidence 5689999999999 8863 2233331111111122222222333333333332 36543 34555677888999886 66
Q ss_pred EEEE-ccEEeeEeCCCceEEEcccCC-ceEEEEEEeccceecceeeEEEccCcceeceE
Q 002258 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIEAVKVHYKFNKLKEYMVLPNMASIADI 400 (946)
Q Consensus 344 ~V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a~~~~y~~~~~~~v~v~p~~~~i~dI 400 (946)
.|.- +|+.+...+.+|.--+.++++ |+.+|. .+.+.-. .+.|+..++.+|
T Consensus 743 ~v~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~----~C~~~~~---~~~~~~~~~~~~ 794 (797)
T PRK15213 743 WARNEQGTPLGFVANNGVLLMNLLDAPGDISVG----QCRFPAA---KLVQNTGKVQEI 794 (797)
T ss_pred EEECCCCcEEEEEcCCCEEEEEcCCCCCEEEEE----EEEEECc---cccCCccceeEE
Confidence 6643 567778999999988989986 677662 3333322 345555555555
No 132
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=65.09 E-value=24 Score=32.99 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCCcceEEEEEeCCCcEEEE-EEeCCCc---eEEEccccCceEEEEEecCCc
Q 002258 146 GGPSNVNVELLSHSGDLISS-VITSSEG---SYLFKNIIPGKYKLRASHPNL 193 (946)
Q Consensus 146 ~plaGv~V~L~~~~g~~v~~-ttTd~~G---~f~f~~l~pG~Y~l~~~~~g~ 193 (946)
.++..|+|++.+.+|+++.+ ..+.+.+ .+.+.++++|.|.|.......
T Consensus 45 ~~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 45 SPIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp S--SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 68888999999988977654 4455555 677788999999999877543
No 133
>COG1470 Predicted membrane protein [Function unknown]
Probab=64.18 E-value=3e+02 Score=32.55 Aligned_cols=89 Identities=12% Similarity=0.300 Sum_probs=60.7
Q ss_pred eCCccEEEcccCCccEEEEEEeeccccccCCCCeeEeeeeEEEEee--cCccccceEEEeeeEEEEEecceeeEEEEeeC
Q 002258 533 DDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVG--TNDVKGVEFVQKGYWLNVISTHDVDAYMTQQD 610 (946)
Q Consensus 533 ~~~G~f~f~~v~PG~Y~v~v~~~~~~~~~~~~~~cw~~~~~~v~V~--~~~~~~i~f~q~Gy~~~i~~sh~~~~~~~~~~ 610 (946)
+..|.-.+ ++-||+|.+.+. ++.-|+++...|.+. ......+.+.+++|......+..+-+++++..
T Consensus 216 s~~g~~~~-e~t~g~y~~~i~----------~~g~ye~~~~av~l~d~~t~dLkls~~~k~~~ftEl~~s~~~~~i~~~~ 284 (513)
T COG1470 216 SSKGNLEV-EITPGKYVVLIA----------KKGIYEKKKRAVKLNDGETKDLKLSVTEKKSYFTELNSSDIYLEISPST 284 (513)
T ss_pred ecccceeE-EecCcceEEEec----------cccceecceEEEEcCCCcccceeEEEEeccceEEEeecccceeEEccCC
Confidence 33343333 577999999986 467778777777764 34456688899999988877777777777554
Q ss_pred CCeeeEEec-cc--ceeEEecCCce
Q 002258 611 GSHVPLKVK-KG--SQHICVESPGV 632 (946)
Q Consensus 611 ~~~~~~~l~-~G--~~~~cv~~~G~ 632 (946)
-....++|. +| ....|++..|.
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~ 309 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGL 309 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccC
Confidence 444456663 34 45788876654
No 134
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=63.98 E-value=8.4 Score=36.51 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=27.9
Q ss_pred EeeCCccEEEcccCCccEEEEEEeeccccccCCCCeeEeeee
Q 002258 531 LTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSF 572 (946)
Q Consensus 531 ~t~~~G~f~f~~v~PG~Y~v~v~~~~~~~~~~~~~~cw~~~~ 572 (946)
+.++..+++|++|+||+|.|.+.|+. ++++-|+.+.
T Consensus 38 ~~~~~~~~~f~~lp~G~YAi~v~hD~------N~NgklD~n~ 73 (112)
T PF09912_consen 38 AKGGTVTITFEDLPPGTYAIAVFHDE------NGNGKLDTNF 73 (112)
T ss_pred cCCCcEEEEECCCCCccEEEEEEEeC------CCCCcCCcCC
Confidence 35677899999999999999999873 4555555544
No 135
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=63.91 E-value=79 Score=40.89 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=63.1
Q ss_pred EEecCCceEEECCcCCe-eEEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ceE
Q 002258 268 AVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GVK 344 (946)
Q Consensus 268 ~~TD~~G~f~f~~Lp~G-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga~ 344 (946)
+.||..|.-.+++|.|= .-+|......=+...++.-....+....+.+... .|.+. +..+-=++.+++|+|++ |+.
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~l~~l~~~dG~~lPfGa~ 784 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYR-KFAVISGQKAMAVLRLRDGSHPPFGAE 784 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEE-EEEEeeeeEEEEEEEcCCCCcCCCceE
Confidence 58999999999999873 2233331111111112222223333333333322 35432 33344456778899886 676
Q ss_pred EEE-ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 345 V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
|.. +|+.+...+.+|.--|.++++ |+.+|+-
T Consensus 785 V~~~~g~~~giVg~~G~vyL~gl~~~~~l~V~w 817 (881)
T PRK15284 785 VKNDNQQQVGLVDDDGNVYLAGVKPGEHMQVFW 817 (881)
T ss_pred EEcCCCceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 665 567778999999998989986 5666654
No 136
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=62.64 E-value=43 Score=35.81 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=11.1
Q ss_pred EcCeeEEEEEEee
Q 002258 448 VPPGEYRLSAMAA 460 (946)
Q Consensus 448 l~pG~Y~v~~~~~ 460 (946)
+++|.|++++...
T Consensus 162 l~~G~Yt~~V~A~ 174 (223)
T PRK12813 162 LPNGAYSFVVESY 174 (223)
T ss_pred CCCccEEEEEEEE
Confidence 7889999999875
No 137
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=61.93 E-value=33 Score=36.76 Aligned_cols=13 Identities=38% Similarity=0.800 Sum_probs=11.1
Q ss_pred EcCeeEEEEEEee
Q 002258 448 VPPGEYRLSAMAA 460 (946)
Q Consensus 448 l~pG~Y~v~~~~~ 460 (946)
+++|.|++++...
T Consensus 167 lp~G~Yt~~V~A~ 179 (225)
T PRK06655 167 LPDGNYTIKASAS 179 (225)
T ss_pred CCCeeEEEEEEEE
Confidence 7899999999764
No 138
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=61.61 E-value=1.1e+02 Score=27.64 Aligned_cols=49 Identities=35% Similarity=0.590 Sum_probs=35.3
Q ss_pred CcEEEeEEEeccCCccccCCCCCCcceEEEEEeCCC--cEEEEEEeCCCceEEEcccc--CceEEE
Q 002258 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG--DLISSVITSSEGSYLFKNII--PGKYKL 186 (946)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~g--~~v~~ttTd~~G~f~f~~l~--pG~Y~l 186 (946)
.|.|+|++... ..|..|.|....+ ..+.++..+ +|+|+|..-. |+.|.|
T Consensus 12 ~~~I~G~i~~~------------~~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~~p~~~~l 64 (106)
T PF14289_consen 12 QFTIEGKIKGL------------PDGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLDEPGFYYL 64 (106)
T ss_pred cEEEEEEEcCC------------CCCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCCCCEEEEE
Confidence 57899988532 3557787876543 456677777 9999999654 678888
No 139
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=61.16 E-value=71 Score=41.15 Aligned_cols=107 Identities=11% Similarity=0.049 Sum_probs=64.5
Q ss_pred EEecCCceEEECCcCCe-eEEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEE-EeeEEEeEEEcCCCCeee-ceE
Q 002258 268 AVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 344 (946)
Q Consensus 268 ~~TD~~G~f~f~~Lp~G-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-ga~ 344 (946)
..||..|...+++|.|= .-+|......-+...++.-....+....+.+... .|.+ .+..+--++.+++|+||| |+.
T Consensus 710 ~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~~-~F~~~~g~~~l~~l~~~dG~~lP~Ga~ 788 (853)
T PRK15248 710 AVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARV-NFATISGKAVLISVKMPDGGIPPMGAD 788 (853)
T ss_pred CeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEEE-EEEEeeceEEEEEEEcCCCCcCCCceE
Confidence 57999999999999873 3334331111111111222222233333333332 3554 344566678888999886 666
Q ss_pred EEE-ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 345 V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
|.. +|+.......+|..-+.++++ |+.+|+-
T Consensus 789 V~~~~g~~~g~Vg~~G~vyl~~~~~~~~l~V~w 821 (853)
T PRK15248 789 VFNGEGTNIGMVGQSGQIYARIAHPSGSLLVRW 821 (853)
T ss_pred EECCCCcEEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 665 567778999999999989886 4565554
No 140
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=60.92 E-value=16 Score=32.26 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=28.7
Q ss_pred ccceEEEEEeCCCCEEEEEEe--CCCcEEE--cC-------CCCCccEEEEEEc
Q 002258 51 YSHVTVELRTLDGLVKESTQC--APNGYYF--IP-------VYDKGSFVIKVNG 93 (946)
Q Consensus 51 ~sgv~V~L~~~~G~~~~~t~t--~~nG~y~--ip-------~l~~G~Y~l~v~~ 93 (946)
.+.++|.++|.+|.++.+-.- .+.|.+. -+ .+++|.|++++.+
T Consensus 24 a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 24 ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 447899999999999887532 3356544 34 4578999998875
No 141
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=59.57 E-value=98 Score=39.78 Aligned_cols=109 Identities=6% Similarity=0.057 Sum_probs=63.4
Q ss_pred eEEEecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-c
Q 002258 266 CHAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-G 342 (946)
Q Consensus 266 ~~~~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-g 342 (946)
..+.||.+|.-.+++|.|=. =+|......-+...++.-....+....+.+.+. .|.+. +..+--++.+++|+|+| |
T Consensus 688 ~~~~Td~~G~AvvP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~ll~l~~~~G~~lP~G 766 (826)
T PRK15217 688 KYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDSETELRGNRKIAAPYRGAVVLV-NFDTDQRKPWFIKALRADGQPLTFG 766 (826)
T ss_pred CCCeECCCCEEEeCCCCCceeceEEECCcCCCCCEEecccEEEEEecCCcEEEE-EEEEecceEEEEEEEcCCCCcCCCc
Confidence 34689999999999998632 223221011111112222223333333333332 35542 34455567788999986 6
Q ss_pred eEEEE-ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 343 VKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 343 a~V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
+.|.- +|+.+.....+|.--+.++.+ +..+|..
T Consensus 767 a~V~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~w 801 (826)
T PRK15217 767 YEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVKVAI 801 (826)
T ss_pred eEEECCCCcEEEEEcCCCeEEEEcCCCCceEEEEE
Confidence 66654 577778999999988877754 6655544
No 142
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=59.22 E-value=2.2e+02 Score=36.75 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=62.1
Q ss_pred EEEecCCceEEECCcCCe-eEEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ce
Q 002258 267 HAVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 343 (946)
Q Consensus 267 ~~~TD~~G~f~f~~Lp~G-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga 343 (946)
...||..|.-.++.|.|= .-+|......=+...++.-....+....+.+... .|.+. +..+-=++.+++|+||| ||
T Consensus 706 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~-~F~~~~g~~~ll~l~~~~G~~lP~Ga 784 (848)
T PRK15298 706 GVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRA-AYDTHKGYRVLLTLTRSNGEPVPFGA 784 (848)
T ss_pred CCEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEEE-EEEEEeeEEEEEEEECCCCCcCCCCc
Confidence 368999999999999874 2233331111011111111122222222333222 35532 33445567788999886 77
Q ss_pred EEEEcc---EEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 344 KILVDG---HERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 344 ~V~l~G---~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
.|.+++ ..+...+.+|.--|.++++ +...++-
T Consensus 785 ~v~~~~~~~~~~g~Vg~~G~vyl~g~~~~~~l~v~w 820 (848)
T PRK15298 785 TASVDGQDANLASIVGDKGQVFLSGLPEEGLLLVNW 820 (848)
T ss_pred EEEEcCCCCeeEEEECCCCEEEEEecCCCceEEEEE
Confidence 777643 2457999999988889986 4555544
No 143
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=59.08 E-value=67 Score=34.36 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=47.6
Q ss_pred eEEEeCcEEEeEEEeccCCccccCCCCCCcceEEEEEeCC-C-cEEEEEEeCCCceEEEccccCceEEEEE-ecCC---c
Q 002258 120 NFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G-DLISSVITSSEGSYLFKNIIPGKYKLRA-SHPN---L 193 (946)
Q Consensus 120 nf~~~g~~IsG~V~~~~g~~s~~~~g~plaGv~V~L~~~~-g-~~v~~ttTd~~G~f~f~~l~pG~Y~l~~-~~~g---~ 193 (946)
|+.-.-..++|+|.+..-|+.- +...-|++++|+..+ + ..-.......||.|+=..|=.|+|.|.. ..++ |
T Consensus 16 NYD~P~s~l~G~iiD~~tgE~i---~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~ 92 (222)
T PF12866_consen 16 NYDEPDSTLTGRIIDVYTGEPI---QTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVV 92 (222)
T ss_dssp ------EEEEEEEEECCTTEE-------STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSC
T ss_pred CCcCCCceEEEEEEEeecCCee---eecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccC
Confidence 5666667899999875322111 112249999998654 2 1234677889999966779999999999 6677 4
Q ss_pred eEEeeccEEEEEccCCe
Q 002258 194 SVEVRGSTEVELGFENG 210 (946)
Q Consensus 194 ~~~~~~~~~v~v~~~~~ 210 (946)
... ...|.+. |+.
T Consensus 93 ~~d---ti~v~i~-G~t 105 (222)
T PF12866_consen 93 PVD---TIEVDIK-GNT 105 (222)
T ss_dssp CE-----EEEEES-SCE
T ss_pred CCc---cEEEEec-Cce
Confidence 432 3556665 443
No 144
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=58.80 E-value=1.1e+02 Score=39.45 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=64.1
Q ss_pred EEecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ceE
Q 002258 268 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GVK 344 (946)
Q Consensus 268 ~~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga~ 344 (946)
+.||..|.-.++.|.|=. =+|......=+...++.-....+....+.+... .|.+. +..+-=++.+++|+|++ ||.
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~~-~F~~~~g~~~l~~l~~~dG~~lPfGa~ 761 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYR-HFDVVSGEKMMAVFRLADGDFPPFGAE 761 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEEE-EEEEEeeeEEEEEEEccCCCcCCCceE
Confidence 689999999999998632 223321111111112222223333333443332 35532 34455567788999886 777
Q ss_pred EEE-ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 345 V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
|.. +|+.+...+.+|.--+.++++ |+.+|+-
T Consensus 762 V~~~~g~~~giVg~~G~vyl~g~~~~~~l~V~w 794 (881)
T PRK15273 762 VKNERQQQLGLVADDGNAWLAGVKAGETLKVFW 794 (881)
T ss_pred EEcCCCcEEEEEcCCCEEEEecCCCCceEEEEe
Confidence 765 577778999999999999987 4555543
No 145
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=58.27 E-value=2.1e+02 Score=28.84 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=49.7
Q ss_pred EEEE-EcCeeEEEEE-EeeCCCCCCceEEcC-CeEEEEEc--CcccceEEEE---eeeEEEEEEE----eccCCCCceEE
Q 002258 444 FCFE-VPPGEYRLSA-MAATPESSSGILFLP-PYADVVVK--SPLLNIEFSQ---ALVNVLGNVA----CKERCGPLVTV 511 (946)
Q Consensus 444 F~f~-l~pG~Y~v~~-~~~~~e~~~G~~~~p-~~~~V~V~--~pv~~i~F~q---~~a~V~G~V~----~~~~~~~~~~V 511 (946)
|-+. ++-|.|++++ .+.+. .|=.... ....+.++ .|...|.+.. .+..+.|.+. +.+... ...+
T Consensus 7 fd~~~l~dG~Y~l~~~~a~D~---agN~~~~~~~~~~~iD~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~-~~~i 82 (158)
T PF13750_consen 7 FDLSTLPDGSYTLTVVTATDA---AGNTSTSTVSETFTIDNTPPTISISDGASVANGSTVYGLVNISINVTDNSD-DSKI 82 (158)
T ss_pred EEeCcCCCccEEEEEEEEEec---CCCEEEEEEeeEEEEcCCCCEEEEecCCccCCCccccceeeeEEEEEeCCC-CceE
Confidence 3444 8999999999 45432 1212211 12245553 6766662221 2334444333 222222 2234
Q ss_pred EEEEcCcccccCCcceeEEE-eeCCccEEEc------ccCCc-cEEEEEEee
Q 002258 512 TLMRLGQKHYDGTEKKTVSL-TDDSDQFLFR------DVLPG-KYRLEVKRT 555 (946)
Q Consensus 512 tL~~~~~~~~~~~~~~~~~~-t~~~G~f~f~------~v~PG-~Y~v~v~~~ 555 (946)
+.....++. ..+...+.. ..++|.|.++ .+.+| .|+|++...
T Consensus 83 ~sv~l~Gg~--~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~ 132 (158)
T PF13750_consen 83 TSVSLTGGP--ASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSAT 132 (158)
T ss_pred EEEEEECCc--ccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEE
Confidence 433333321 012223333 3456777663 34445 699998864
No 146
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=57.97 E-value=3.5e+02 Score=31.29 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=51.6
Q ss_pred eCCccEEE---cccCCccEEEEEEeeccccccCCCCeeEeee-eEEEEeecCccccceEEEee-----eEEEEEecce--
Q 002258 533 DDSDQFLF---RDVLPGKYRLEVKRTSREASSMEDNWCWEQS-FIGVDVGTNDVKGVEFVQKG-----YWLNVISTHD-- 601 (946)
Q Consensus 533 ~~~G~f~f---~~v~PG~Y~v~v~~~~~~~~~~~~~~cw~~~-~~~v~V~~~~~~~i~f~q~G-----y~~~i~~sh~-- 601 (946)
.+||.|+- -+++||+|++.+... +-.|... +..|.|.+..++ .+|.|.. +.+.+...-.
T Consensus 168 p~DGvFT~~l~l~~~~G~Y~~~v~~~---------n~vF~R~~~q~v~V~p~Pi~-~~~~~~~~~~~~h~l~v~~d~~~i 237 (374)
T TIGR03503 168 PGDGIFTGEFNLDVAPGEYRPTYQSR---------NPVFLREVEQPVLVYPLPVS-YTVIQSEDESGAHQLMVDADAGHI 237 (374)
T ss_pred CCCceEEEEeeccCCCceEEEEEEEc---------CceEEEEEEEeEEEECCCee-EEEEccCCCCCceEEEEEccccee
Confidence 35777765 367899999999852 3444433 446666554433 5666642 4444433322
Q ss_pred ------eeEEEEeeCCCeeeEE--ecccceeEEec---CCceeEEEe
Q 002258 602 ------VDAYMTQQDGSHVPLK--VKKGSQHICVE---SPGVHNLHF 637 (946)
Q Consensus 602 ------~~~~~~~~~~~~~~~~--l~~G~~~~cv~---~~G~y~~~~ 637 (946)
+.+++..|+|...... ..++..++-++ ..|.|.++.
T Consensus 238 ~~~s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~ 284 (374)
T TIGR03503 238 DPGSLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKG 284 (374)
T ss_pred ccccEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEE
Confidence 3456666777622111 12334444444 467777763
No 147
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=57.82 E-value=1.1e+02 Score=39.46 Aligned_cols=107 Identities=12% Similarity=0.126 Sum_probs=63.5
Q ss_pred EEecCCceEEECCcCCe-eEEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ceE
Q 002258 268 AVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GVK 344 (946)
Q Consensus 268 ~~TD~~G~f~f~~Lp~G-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga~ 344 (946)
+.||..|.-.++.|.|= .-+|......-+...++.-....+....+.+... .|.+. +..+-=++.+++|+|+| |+.
T Consensus 701 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~l~~l~~~~G~~lPfGa~ 779 (845)
T PRK15294 701 VDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRA-EYKTNIGYKALMVLTRINNLPVPFGAT 779 (845)
T ss_pred CEECCCCeEEeCCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEECCCCCcCCceEE
Confidence 69999999999999863 2233331111111111222222333333333332 35543 33444456778899885 777
Q ss_pred EEE-c--cEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 345 ILV-D--GHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 345 V~l-~--G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
|.+ + |+.+.....+|.--|.++++ |+..|+-
T Consensus 780 V~~~~~~g~~~g~Vg~~G~vyl~gl~~~~~L~v~w 814 (845)
T PRK15294 780 VSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKW 814 (845)
T ss_pred EEccCCCCceEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 775 3 67778999999999989985 5666654
No 148
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=57.55 E-value=23 Score=32.03 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=32.3
Q ss_pred EEEcCCCCeeeceEEEEccEEeeEeCCCceEEEcccCCceEEEEEEecc
Q 002258 331 RVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (946)
Q Consensus 331 ~V~d~~G~pl~ga~V~l~G~~~~~TD~~G~f~~~~L~pG~Y~I~a~~~~ 379 (946)
.++|.++.|.+|..|..|..-+---+..=+..+ +|+||+|+|++.-.+
T Consensus 25 lliD~~~~~~~~~~I~~~~n~vhy~~Gqte~~I-~L~PG~htLtl~~~d 72 (87)
T PF14347_consen 25 LLIDGDGPPLANEPIPFNINGVHYGKGQTELNI-ELPPGKHTLTLQLGD 72 (87)
T ss_pred EEECCCCCcCCCCeeeecCCeEEeCCCEEEEEE-EeCCCCEEEEEEeCC
Confidence 456778888999988875443333222223556 699999999987654
No 149
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=56.56 E-value=1.7e+02 Score=37.46 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=62.8
Q ss_pred EEecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ceE
Q 002258 268 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GVK 344 (946)
Q Consensus 268 ~~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga~ 344 (946)
..||..|.-.+++|.|=. -+|......-+...++.-....|....+.+.+. .|.+. +..+--++.+++|+|+| |+.
T Consensus 659 v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v-~F~~~~g~~~l~~l~~~~G~~lPfGa~ 737 (801)
T PRK15304 659 VWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKV-DFSVLNQRRVMLNVKRADGSPLPKGVS 737 (801)
T ss_pred eEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEEE-EEEEccceEEEEEEEccCCCcCCCcEE
Confidence 489999999999998743 233331111111112222222333333333332 35432 33445567788999986 566
Q ss_pred EEE-ccEEeeEeCCCceEEEcccCC-ceEEEE
Q 002258 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIE 374 (946)
Q Consensus 345 V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~ 374 (946)
|.. +|+.+.....+|..-+.++++ |..+|+
T Consensus 738 V~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 738 IVDEKGNYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EECCCCcEEEEEeCCCEEEEECCCCCceEEEE
Confidence 654 567778899999999999987 556555
No 150
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=56.51 E-value=52 Score=35.36 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=11.5
Q ss_pred EcCeeEEEEEEeeC
Q 002258 448 VPPGEYRLSAMAAT 461 (946)
Q Consensus 448 l~pG~Y~v~~~~~~ 461 (946)
+++|.|++++....
T Consensus 170 ~~~G~Y~~~V~a~~ 183 (230)
T PRK12633 170 LADGKYSITVSASD 183 (230)
T ss_pred CCCcceEEEEEEEe
Confidence 78899999998743
No 151
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=55.90 E-value=46 Score=35.50 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=11.1
Q ss_pred EcCeeEEEEEEee
Q 002258 448 VPPGEYRLSAMAA 460 (946)
Q Consensus 448 l~pG~Y~v~~~~~ 460 (946)
+++|.|++++...
T Consensus 160 lp~G~Y~~~V~a~ 172 (218)
T PRK09619 160 LQPGQYQLSVVSG 172 (218)
T ss_pred CCCceeEEEEEEe
Confidence 7899999999754
No 152
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=54.51 E-value=49 Score=30.06 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=17.1
Q ss_pred EeCCCceEEEc-----ccCCceEEEEEEec
Q 002258 354 ITDRDGYYKLD-----QVTSNRYTIEAVKV 378 (946)
Q Consensus 354 ~TD~~G~f~~~-----~L~pG~Y~I~a~~~ 378 (946)
.++.+|.|.++ +...|.|+|++...
T Consensus 57 ~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 57 TTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp ETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred eeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 56888887763 33569999999873
No 153
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=53.49 E-value=24 Score=33.55 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=29.2
Q ss_pred eeceEEEEccEEeeEeCCCceEEEcccCCceEEEEEEec
Q 002258 340 VEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKV 378 (946)
Q Consensus 340 l~ga~V~l~G~~~~~TD~~G~f~~~~L~pG~Y~I~a~~~ 378 (946)
.....|.+||+.+..+...+.|.+ +++||+|+|.+..+
T Consensus 40 ~~~~~v~vdg~~ig~l~~g~y~~~-~v~pG~h~i~~~~~ 77 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNGGYFYV-EVPPGKHTISAKSE 77 (117)
T ss_pred cccceEEECCEEEEEeCCCeEEEE-EECCCcEEEEEecC
Confidence 445667789999888665555555 99999999999665
No 154
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=52.67 E-value=25 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=24.5
Q ss_pred eeEEEEEEecCCCCCcccceEEEEecCCccc
Q 002258 858 SQISVRIYSKDDAGEPIPSVLLSLSGDDGYR 888 (946)
Q Consensus 858 ~~i~v~v~d~~~~~~pl~gvllsLsg~~~yR 888 (946)
-+|.++|.-.|.+|+|++++-+.|.-++++.
T Consensus 13 e~I~ltVt~kda~G~pv~n~~f~l~r~~~~n 43 (47)
T PF05688_consen 13 ETIPLTVTVKDANGNPVPNAPFTLTRGDAKN 43 (47)
T ss_pred CeEEEEEEEECCCCCCcCCceEEEEecCccc
Confidence 3677777777667999999999998887643
No 155
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=52.50 E-value=79 Score=40.68 Aligned_cols=96 Identities=9% Similarity=0.102 Sum_probs=66.5
Q ss_pred EEeCCCceEEeCCCCCCc--eEEEEecc--CCeEEe-------ecC----CCceeEeeeeeEEEEEEecCCCCCccc-ce
Q 002258 814 TSTGADGSFIGGPLYDDI--TYNVEASK--PGYYLR-------QVG----PNSFSCQKLSQISVRIYSKDDAGEPIP-SV 877 (946)
Q Consensus 814 ~~T~~~G~f~~gpl~~~~--~y~~~A~k--~gy~~~-------~~~----~~~F~a~kL~~i~v~v~d~~~~~~pl~-gv 877 (946)
+.||.+|.-.+..|.+=. ...|.... ..-.+. +.. ...|+..+--.+.+++++++ |+||| |+
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~v~F~~~~g~~~ll~l~~~~--G~~lP~Ga 775 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRARFDTRVGYRVLMSLKQAN--GNAVPFGA 775 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeEEEEEEEcCC--CCcCCccE
Confidence 599999999998776422 22222221 223333 221 25788988889999999886 89998 88
Q ss_pred EEEEecCCccccccccCCCceEEecccCCC-ceeeE
Q 002258 878 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 912 (946)
Q Consensus 878 llsLsg~~~yR~n~~t~~~G~~~f~~L~PG-~Y~lr 912 (946)
.+.+.++++ +...+.+.+|.+-+.+|.|. +..++
T Consensus 776 ~V~~~~~~~-~~~g~Vg~~G~vyl~gl~~~~~l~v~ 810 (842)
T PRK15207 776 TATLIDTTK-EASSIVGEEGQLYISGMPEEGELQVS 810 (842)
T ss_pred EEEecCCCC-ceEEEECCCCEEEEEcCCCCceEEEE
Confidence 888767643 34478999999999999964 55554
No 156
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.08 E-value=24 Score=36.42 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=49.3
Q ss_pred cccceEEEEEeCCCCEEEEEEeCCCcEEEcCCCCCccEEEEEEcCCCcccCCceeEEEEcC
Q 002258 50 DYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDD 110 (946)
Q Consensus 50 ~~sgv~V~L~~~~G~~~~~t~t~~nG~y~ip~l~~G~Y~l~v~~P~G~~~~p~~v~v~vd~ 110 (946)
++-++-++++.++|..+.+..-+..|.|.+..-.+|.|+.-+..+- -...|..+.++|+.
T Consensus 53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~-s~mtpk~V~F~ihv 112 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKM-STMTPKTVMFTIHV 112 (201)
T ss_pred CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCC-CCCCceEEEEEEEE
Confidence 5568899999999999999888888999988778999999988765 33567777777665
No 157
>KOG3306 consensus Predicted membrane protein [Function unknown]
Probab=51.95 E-value=21 Score=35.91 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=32.5
Q ss_pred eEEEEc-cEEe--eEeCCCceEEEcccCCceEEEEEEeccceecce
Q 002258 343 VKILVD-GHER--SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 385 (946)
Q Consensus 343 a~V~l~-G~~~--~~TD~~G~f~~~~L~pG~Y~I~a~~~~y~~~~~ 385 (946)
+.+.+| |+.. +.|| |.|..++++.|+|.+++..+.+.++++
T Consensus 13 ~~liv~~~~f~gF~~td--~sf~~~d~ptgty~V~V~~s~vi~~p~ 56 (185)
T KOG3306|consen 13 ARLIVNGGEFVGFASTD--GSFGSEDSPTGTYRVEVPSSDVIGHPA 56 (185)
T ss_pred eeeEeccceEEEEEeec--cccccccCCceeEEEEecCcceeecce
Confidence 455553 4444 4676 999999999999999999999887766
No 158
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=51.10 E-value=1.4e+02 Score=38.57 Aligned_cols=107 Identities=9% Similarity=0.067 Sum_probs=64.5
Q ss_pred EEecCCceEEECCcCCeeE-EEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ceE
Q 002258 268 AVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GVK 344 (946)
Q Consensus 268 ~~TD~~G~f~f~~Lp~G~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga~ 344 (946)
..||..|.-.++.|.|=.. +|......=+...++.-....+....+.+.+. +|.+. +..+-=++.+++|+||| |+.
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAvv~~-~F~~~~g~~~ll~l~~~~G~~lP~Ga~ 796 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLA-DFETDQGRSAIMNITRSDGKNIPFAAD 796 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEE-EEEeecceEEEEEEECCCCCcCCCceE
Confidence 4689999999999987432 33321111111122222233333333433333 35542 34455567888999986 666
Q ss_pred EEE-ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 345 V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
|.. +|+.+...+.+|.--++++++ |+.+|+-
T Consensus 797 V~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~w 829 (865)
T PRK09828 797 VYDEQGNVIGNVGQGGQAFVRGIEDQGELRIRW 829 (865)
T ss_pred EECCCCcEEEEEeCCCEEEEEcCCCCceEEEEE
Confidence 654 567778999999999999987 5666654
No 159
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=49.86 E-value=1.9e+02 Score=37.08 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=63.4
Q ss_pred EEEecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ce
Q 002258 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 343 (946)
Q Consensus 267 ~~~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga 343 (946)
...||..|.-.+++|.|=. -+|......=+...++.-....+....+.+.+. .|.+. +..+--++.+++|+||| |+
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~-~F~~~~g~~~ll~l~~~~G~~lPfGa 746 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKA-VYKTSVGTNALIRITRTNGKPLALGT 746 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEECCCCCcCCCce
Confidence 4689999999999998742 233331111111111222222333333433332 35542 34455567788999986 77
Q ss_pred EEEE-c--c--EEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 344 KILV-D--G--HERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 344 ~V~l-~--G--~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
.|.+ + | +.....+.+|.--|.++++ |+.+|+-
T Consensus 747 ~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~w 784 (814)
T PRK15235 747 VLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASW 784 (814)
T ss_pred EEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEEE
Confidence 7776 2 3 3467999999988889987 4565554
No 160
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=49.21 E-value=39 Score=36.31 Aligned_cols=45 Identities=24% Similarity=0.472 Sum_probs=32.0
Q ss_pred CCCcceEEEEEeCCCcEEEEEE--eCCCceEEEc--c-------ccCceEEEEEec
Q 002258 146 GGPSNVNVELLSHSGDLISSVI--TSSEGSYLFK--N-------IIPGKYKLRASH 190 (946)
Q Consensus 146 ~plaGv~V~L~~~~g~~v~~tt--Td~~G~f~f~--~-------l~pG~Y~l~~~~ 190 (946)
.+...|+|.+++.+|+++++.. .-..|.+.|. + +++|.|++.+.+
T Consensus 126 ~~a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 126 GDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred CcCcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 4666799999999998887653 2355655554 3 678888888754
No 161
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=48.85 E-value=1.2e+02 Score=33.31 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=32.7
Q ss_pred CCCcceEEEEEeCCCcEEEEEEe--CCCce--EEEcc-------ccCceEEEEEec
Q 002258 146 GGPSNVNVELLSHSGDLISSVIT--SSEGS--YLFKN-------IIPGKYKLRASH 190 (946)
Q Consensus 146 ~plaGv~V~L~~~~g~~v~~ttT--d~~G~--f~f~~-------l~pG~Y~l~~~~ 190 (946)
.+...|+|++++.+|+++++..- -+.|. |..++ +++|.|++.+.+
T Consensus 138 ~~a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 138 EDSDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred CcCceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 45667999999999998876543 33564 55555 778999998863
No 162
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=48.74 E-value=33 Score=29.29 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=30.3
Q ss_pred EEEcCCCCeee-ceEEEE-ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 331 RVVDENDMGVE-GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 331 ~V~d~~G~pl~-ga~V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
++.+++|+||+ ||.|.. +|+.+...+.+|+.-|+++++ |+.+|+-
T Consensus 2 ~l~~~~G~~lPfGA~v~~~~g~~~g~Vg~~G~vyl~~~~~~~~L~V~w 49 (68)
T PF13953_consen 2 TLRDADGKPLPFGASVSDEDGNNIGIVGQDGQVYLSGLPPKGTLTVKW 49 (68)
T ss_dssp EEEETTSEE--TT-EEEETTSSEEEEB-GCGEEEEEEE-TCEEEEEES
T ss_pred EEEcCCCCcCCCCcEEEcCCCCEEEEEcCCCEEEEECCCCCcEEEEEE
Confidence 35677888886 788877 677888999999999988874 5555543
No 163
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.70 E-value=1e+02 Score=32.06 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=35.6
Q ss_pred ceEEEEEeCCCC--EEEEEEeCCCcEEEcCCCCCccEEEEEEcC-CCcc
Q 002258 53 HVTVELRTLDGL--VKESTQCAPNGYYFIPVYDKGSFVIKVNGP-EGWS 98 (946)
Q Consensus 53 gv~V~L~~~~G~--~~~~t~t~~nG~y~ip~l~~G~Y~l~v~~P-~G~~ 98 (946)
|+.|++-++.++ ++..-.-.++|.|+|-..+||++++-+.+- .+|.
T Consensus 66 gm~VeV~e~fdnnh~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~s~awf 114 (215)
T KOG1690|consen 66 GMHVEVKETFDNNHVVLSQQYSSEGDFTFTALTPGEHRICIQSNSTAWF 114 (215)
T ss_pred eEEEEeecCCCCceEEEeecCCCCCceEEEccCCCceEEEEecccchhh
Confidence 677777766554 777777788999998888999999977654 3564
No 164
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=48.07 E-value=90 Score=30.54 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=36.1
Q ss_pred eeEEEeEEEcCCCCeeeceEEEEc-------cE--Ee-eEeCCCceEEEc--ccCCceEEEEE
Q 002258 325 GFSVGGRVVDENDMGVEGVKILVD-------GH--ER-SITDRDGYYKLD--QVTSNRYTIEA 375 (946)
Q Consensus 325 g~sV~G~V~d~~G~pl~ga~V~l~-------G~--~~-~~TD~~G~f~~~--~L~pG~Y~I~a 375 (946)
+..+.-++.|++|.|+.++.+.+. .. .. ....++|.|... .+.+|.|.|++
T Consensus 68 ~~~~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l 130 (146)
T PF05751_consen 68 DNSLTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRL 130 (146)
T ss_pred CCeEEEEEEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEE
Confidence 345555777889999999999871 11 12 255888888873 44689988887
No 165
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=47.63 E-value=6.6e+02 Score=31.40 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=100.7
Q ss_pred ccEEeeEeC--CCceEEEcccCCceEEEEEEecc-c---eecceee--EEEccCcce-eceEEEe--eeEEEEEEEEc--
Q 002258 348 DGHERSITD--RDGYYKLDQVTSNRYTIEAVKVH-Y---KFNKLKE--YMVLPNMAS-IADIKAI--SYDICGVVRTV-- 414 (946)
Q Consensus 348 ~G~~~~~TD--~~G~f~~~~L~pG~Y~I~a~~~~-y---~~~~~~~--v~v~p~~~~-i~dI~~~--~~~v~G~V~~~-- 414 (946)
||..+..|| .+=+|.|..-.+|.|+|.+..-+ + .|+.... +.+....+. +..+... ..-++|.....
T Consensus 425 ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~ 504 (667)
T PRK14081 425 DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEV 504 (667)
T ss_pred CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEE
Confidence 888777665 66789998889999999986432 2 1222211 222211122 3333322 33455543311
Q ss_pred --CCcccEEEEEE-eCCCcccceeeeeCCceEEEEE-EcCeeEEEEEEeeCCCCCCceEEc-CCeEEEEEc--CcccceE
Q 002258 415 --GSGNKVKVALT-HGPDKVKPQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFL-PPYADVVVK--SPLLNIE 487 (946)
Q Consensus 415 --~~~~~a~VtL~-~~~~~~~~~~~~Td~~G~F~f~-l~pG~Y~v~~~~~~~e~~~G~~~~-p~~~~V~V~--~pv~~i~ 487 (946)
.+....-.... ..++.. ...+.=-....|.|. -.+|.|+|.+.+.+-.+... |. -+++.+.|. -|+++..
T Consensus 505 ~~~~~k~v~y~y~~~~NG~~-v~~t~Ys~~~~ysf~P~~~GkY~I~V~aKn~~s~~~--~D~~k~v~~~V~e~~pi~nt~ 581 (667)
T PRK14081 505 IIQNTKDVLIKYILKINGHK-VEETDYIKNKKYKFIPKCSGKYTIEVLAKNIKSTEE--YDSKKEVKFYVREALPITNTK 581 (667)
T ss_pred EEeCCCeEEEEEEEEECCEE-EEEeeccccceEEEeecCCceEEEEEEEcccccccc--cccceEEEEEEcCCCCceeeE
Confidence 11122222221 123322 122223367889999 99999999998864322222 22 235666773 4777766
Q ss_pred EEEeeeEEEEEEEeccCCCCceEEEEEEcCccc-------ccCCcceeEEEeeCCccEEEcccCCccEEEEEEe
Q 002258 488 FSQALVNVLGNVACKERCGPLVTVTLMRLGQKH-------YDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKR 554 (946)
Q Consensus 488 F~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~-------~~~~~~~~~~~t~~~G~f~f~~v~PG~Y~v~v~~ 554 (946)
..-.++... |...++++....++.. +.+|+-..++-=....-|+|.-.-.|.|+|-+-.
T Consensus 582 ~~~~~~~~~--------~n~~~t~~~~~~gg~~v~Yef~v~~~g~w~~vq~ys~k~~ysf~p~~~g~Y~ilvl~ 647 (667)
T PRK14081 582 IKTSKKKFK--------CNEEVTFSVKSEGGKDVCYEFYIMEKGEWKLVQKYSRKNYYSFMPFNKGKYKVLVLC 647 (667)
T ss_pred EEeecceEE--------cCCeEEEEEEccCCCcEEEEEEEEECCcEEEEeeccccCceEEEeccCCcEEEEEEE
Confidence 554322221 3323333333332221 0011111112123457799999999999998763
No 166
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=46.66 E-value=1.1e+02 Score=39.26 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=64.7
Q ss_pred EEEeCCCceEEeCCCCCC--ceEEEEec--cCCeEE-------eecC----CCceeEeeeeeEEEEEEecCCCCCccc-c
Q 002258 813 ETSTGADGSFIGGPLYDD--ITYNVEAS--KPGYYL-------RQVG----PNSFSCQKLSQISVRIYSKDDAGEPIP-S 876 (946)
Q Consensus 813 ~~~T~~~G~f~~gpl~~~--~~y~~~A~--k~gy~~-------~~~~----~~~F~a~kL~~i~v~v~d~~~~~~pl~-g 876 (946)
.+.||.+|.-.+..|.+= -.+.|... ....++ .+.. ...|+..+--.+.+++++++ |+||| |
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g~~~ll~l~~~~--G~~lPfG 745 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTN--GKPLALG 745 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeEEEEEEECCC--CCcCCCc
Confidence 368999999999876642 12222222 112333 3322 14788888889999999886 88997 5
Q ss_pred eEEEEecCCc-cccccccCCCceEEecccCCC-ceeeE
Q 002258 877 VLLSLSGDDG-YRNNSVSWAGGSFHFDNLFPG-NFYLR 912 (946)
Q Consensus 877 vllsLsg~~~-yR~n~~t~~~G~~~f~~L~PG-~Y~lr 912 (946)
+.+.+-++++ +....+.+++|.+-+.+|.|. +..++
T Consensus 746 a~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~ 783 (814)
T PRK15235 746 TVLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIAS 783 (814)
T ss_pred eEEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEE
Confidence 5555544432 234578999999999999986 44444
No 167
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=46.49 E-value=75 Score=25.83 Aligned_cols=42 Identities=24% Similarity=0.500 Sum_probs=27.1
Q ss_pred EEEeCCCcEEE--cCCCCCccEEEEEEc--CCCcccCCceeEEEEc
Q 002258 68 STQCAPNGYYF--IPVYDKGSFVIKVNG--PEGWSWNPDKVAVTVD 109 (946)
Q Consensus 68 ~t~t~~nG~y~--ip~l~~G~Y~l~v~~--P~G~~~~p~~v~v~vd 109 (946)
.+..+.+|.|. ++....|.|.+++++ ..|=.-...+..|.||
T Consensus 5 ~~t~~~~G~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~~~~~~tiD 50 (54)
T PF13754_consen 5 TTTVDSDGNWSFTVPALADGTYTITVTATDAAGNTSTSSSVTFTID 50 (54)
T ss_pred EEEECCCCcEEEeCCCCCCccEEEEEEEEeCCCCCCCccceeEEEe
Confidence 45567899998 577788999997765 3343333334445554
No 168
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=45.46 E-value=44 Score=37.16 Aligned_cols=44 Identities=18% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCcceEEEEEeCCCcEEEEEEeC----CCceEEEc--c-------ccCceEEEEEec
Q 002258 147 GPSNVNVELLSHSGDLISSVITS----SEGSYLFK--N-------IIPGKYKLRASH 190 (946)
Q Consensus 147 plaGv~V~L~~~~g~~v~~ttTd----~~G~f~f~--~-------l~pG~Y~l~~~~ 190 (946)
....|+|.+++.+|+++++..-+ ..|.+.|. + +++|.|++++.+
T Consensus 164 ~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a 220 (295)
T PRK05842 164 SKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY 220 (295)
T ss_pred cCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 34579999999999988776543 34764444 3 788999988753
No 169
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=44.78 E-value=49 Score=31.39 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=27.4
Q ss_pred eCCCcEEEcCCCCCccEEEEEEcCCCcccCCceeEEEEcCC
Q 002258 71 CAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDT 111 (946)
Q Consensus 71 t~~nG~y~ip~l~~G~Y~l~v~~P~G~~~~p~~v~v~vd~~ 111 (946)
+.+++|+.+.+ +||.|.|..+.+--+.+.+...+++++.+
T Consensus 55 l~~g~y~~~~v-~pG~h~i~~~~~~~~~~~~~~l~~~~~~G 94 (117)
T PF11008_consen 55 LKNGGYFYVEV-PPGKHTISAKSEFSSSPGANSLDVTVEAG 94 (117)
T ss_pred eCCCeEEEEEE-CCCcEEEEEecCccCCCCccEEEEEEcCC
Confidence 44566666787 99999999987742333556677777654
No 170
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=43.82 E-value=60 Score=29.35 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=29.1
Q ss_pred cceEEEEEeCCCCEEEEEEeCC-CcEEE---cCCCCCccEEEEEEc
Q 002258 52 SHVTVELRTLDGLVKESTQCAP-NGYYF---IPVYDKGSFVIKVNG 93 (946)
Q Consensus 52 sgv~V~L~~~~G~~~~~t~t~~-nG~y~---ip~l~~G~Y~l~v~~ 93 (946)
..++|.|.+++|..+.-...+- ||.|. .|- .+|.|.|.+.-
T Consensus 32 ~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~-~~G~~~i~V~~ 76 (93)
T smart00557 32 GELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPT-EPGDYTVTVKF 76 (93)
T ss_pred CcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeC-CCEeEEEEEEE
Confidence 4778888888886655555544 78777 455 67888887764
No 171
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=43.76 E-value=2.7e+02 Score=29.09 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=30.3
Q ss_pred cccEEEEEE----eCCC-cccceeeeeCCceEEEEE--EcCeeEEEEEEe
Q 002258 417 GNKVKVALT----HGPD-KVKPQVKQTDNNGNFCFE--VPPGEYRLSAMA 459 (946)
Q Consensus 417 ~~~a~VtL~----~~~~-~~~~~~~~Td~~G~F~f~--l~pG~Y~v~~~~ 459 (946)
...+..+|- +..+ .+......+|+.|.-.-. |.||+|++...+
T Consensus 236 aaDaTAtLPtTLKdSkGaDVpVTsVITnssG~~vTNgqLsaGtYtVTySA 285 (301)
T PF06488_consen 236 AADATATLPTTLKDSKGADVPVTSVITNSSGNVVTNGQLSAGTYTVTYSA 285 (301)
T ss_pred ccCceEEcccccccCCCCcceeEEEEEcCCCcEeecCcccCceEEEEEec
Confidence 345556552 3222 233567789999998887 999999999987
No 172
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=43.18 E-value=3.6e+02 Score=27.14 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=12.8
Q ss_pred eEEEccccCceEEEEE
Q 002258 173 SYLFKNIIPGKYKLRA 188 (946)
Q Consensus 173 ~f~f~~l~pG~Y~l~~ 188 (946)
.|.+..++-|.|.+.+
T Consensus 6 ~fd~~~l~dG~Y~l~~ 21 (158)
T PF13750_consen 6 TFDLSTLPDGSYTLTV 21 (158)
T ss_pred EEEeCcCCCccEEEEE
Confidence 3566788999999988
No 173
>PRK15193 outer membrane usher protein; Provisional
Probab=43.13 E-value=2.5e+02 Score=36.41 Aligned_cols=107 Identities=13% Similarity=0.176 Sum_probs=60.5
Q ss_pred EEEecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ce
Q 002258 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 343 (946)
Q Consensus 267 ~~~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga 343 (946)
...||..|.-.++.|.|=. =+|......-+...++.-....|....+.+.+. .|.+. +..+-=++ +.+|+||| |+
T Consensus 734 ~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~dvel~~t~~~VvPt~GAvv~~-~F~~~~g~~~ll~l-~~~G~plPfGa 811 (876)
T PRK15193 734 GLKTDWRGYAVVPYATSYRENRIALDAASLKDNVDLENAVVNVVPTKGALVLA-EFNAHVGARALMTL-SHQGIPLPFGA 811 (876)
T ss_pred CCeECCCCeEEECCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEE-ccCCcCCCCce
Confidence 3789999999999998632 233321111111111222222333333333332 35432 22333344 44799986 66
Q ss_pred EEEE-ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 344 ~V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
.|.. +|+.....+.+|.--|.++++ |+..|+-
T Consensus 812 ~V~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~w 845 (876)
T PRK15193 812 TVTLDDQHNSGIVDDDGSVYLSGLPAQGVLHVRW 845 (876)
T ss_pred EEECCCCceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 6655 567778999999999989986 4565544
No 174
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=42.14 E-value=1.2e+02 Score=26.98 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=31.5
Q ss_pred CcceEEEEEeCCCcEEEEEEeCCCceEEEcccc-----CceEEEEEecCCceEE
Q 002258 148 PSNVNVELLSHSGDLISSVITSSEGSYLFKNII-----PGKYKLRASHPNLSVE 196 (946)
Q Consensus 148 laGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~-----pG~Y~l~~~~~g~~~~ 196 (946)
.+|+.|.|. .+|.....+.++ +|++.+. ++ +|.|+|.+.+-.|...
T Consensus 25 ~~gs~ValS-~dg~l~G~ai~~-sG~ati~-l~~~it~~~~~tlTit~~n~~t~ 75 (81)
T PF03785_consen 25 VPGSYVALS-QDGDLYGKAIVN-SGNATIN-LTNPITDEGTLTLTITAFNYVTY 75 (81)
T ss_dssp STT-EEEEE-ETTEEEEEEE-B-TTEEEEE--SS--TT-SEEEEEEE-TTB--E
T ss_pred CCCcEEEEe-cCCEEEEEEEec-CceEEEE-CCcccCCCceEEEEEEEEccEEE
Confidence 467788775 567888999999 9999887 65 6899999988777543
No 175
>PF13115 YtkA: YtkA-like
Probab=42.13 E-value=72 Score=28.15 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=0.0
Q ss_pred EEEeEEEcCCCCeeeceEEEE-------------ccEEeeEeCCCceEEEccc---CCceEEEEE
Q 002258 327 SVGGRVVDENDMGVEGVKILV-------------DGHERSITDRDGYYKLDQV---TSNRYTIEA 375 (946)
Q Consensus 327 sV~G~V~d~~G~pl~ga~V~l-------------~G~~~~~TD~~G~f~~~~L---~pG~Y~I~a 375 (946)
.+.=+ .+.+|+||.+|.|.+ .-....+....|.|... + .+|.|.|++
T Consensus 23 ~i~v~-~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~-~~f~m~G~W~i~v 85 (86)
T PF13115_consen 23 TITVT-VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAE-VTFSMAGTWQITV 85 (86)
T ss_pred EEEEE-ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEE-eecCCCeeEEEEE
No 176
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=42.08 E-value=1.2e+02 Score=27.43 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=28.8
Q ss_pred cceEEEEEeCCC--CEEEEEEeCCCcEEE--cCCCCCccEEEEEEc
Q 002258 52 SHVTVELRTLDG--LVKESTQCAPNGYYF--IPVYDKGSFVIKVNG 93 (946)
Q Consensus 52 sgv~V~L~~~~G--~~~~~t~t~~nG~y~--ip~l~~G~Y~l~v~~ 93 (946)
.+.+|-|+..++ ..++++... ||.|. .++-.|+-|.|.+..
T Consensus 24 ~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~~p~~~~l~~~~ 68 (106)
T PF14289_consen 24 DGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLDEPGFYYLSIFK 68 (106)
T ss_pred CCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCCCCEEEEEEEEC
Confidence 578888887654 356666666 99998 466668888884333
No 177
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=41.61 E-value=28 Score=28.88 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=22.9
Q ss_pred EEeCCCcEEEEEEeCCCceEEEccccCceEEEE
Q 002258 155 LLSHSGDLISSVITSSEGSYLFKNIIPGKYKLR 187 (946)
Q Consensus 155 L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~ 187 (946)
+.|-.|..-.+.+||++|.-.|. ++|+.|.|-
T Consensus 25 ~~D~tGn~~~~vtid~dG~~~f~-v~~~s~SVW 56 (57)
T PF09154_consen 25 FYDYTGNSSETVTIDEDGWGEFP-VPPGSVSVW 56 (57)
T ss_dssp EEETTSSSSSEEEE-TTSEEEEE-E-TTEEEEE
T ss_pred EEEccCCCCCeEEECCCeEEEEE-ECCCEEEEe
Confidence 34555544457899999999999 999999874
No 178
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=40.81 E-value=5.6e+02 Score=28.61 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=30.6
Q ss_pred eeEEEeEEEcC-CCCeeeceEEEEccEEee-EeCCCceEEEc-----ccCCceEEEEEE
Q 002258 325 GFSVGGRVVDE-NDMGVEGVKILVDGHERS-ITDRDGYYKLD-----QVTSNRYTIEAV 376 (946)
Q Consensus 325 g~sV~G~V~d~-~G~pl~ga~V~l~G~~~~-~TD~~G~f~~~-----~L~pG~Y~I~a~ 376 (946)
...++|.+... .|. -+.+.++|.... ..+++|.|.+. .|..|.|+|++.
T Consensus 62 ~~t~s~tvs~~~~g~---~v~v~~~g~~~t~~~~~~G~ws~t~~~~~~l~~g~~ti~v~ 117 (317)
T PF13753_consen 62 TVTFSGTVSGAEPGS---TVTVTINGTTGTLTADADGNWSVTVTPSDDLPDGDYTITVT 117 (317)
T ss_pred eeEEEEEecCCCCCC---EEEEEECCEEEEEEEecCCcEEEeeccccccccCcceeEEE
Confidence 34677777542 222 234555776553 56799987662 356789999887
No 179
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=40.76 E-value=47 Score=35.43 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=27.3
Q ss_pred ccceEEEEEeCCCCEEEEEEeC--CCcEEEc--CC----CCCccEEEEEEc
Q 002258 51 YSHVTVELRTLDGLVKESTQCA--PNGYYFI--PV----YDKGSFVIKVNG 93 (946)
Q Consensus 51 ~sgv~V~L~~~~G~~~~~t~t~--~nG~y~i--p~----l~~G~Y~l~v~~ 93 (946)
.+.++|+++|.+|.+ .+..-. +.|.+.+ +. +++|.|++++.+
T Consensus 122 a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a 171 (218)
T PRK09619 122 APTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVS 171 (218)
T ss_pred CcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEE
Confidence 447999999999997 444321 2454433 32 577888877754
No 180
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=40.65 E-value=66 Score=27.32 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=15.5
Q ss_pred CCceEEecccCCCceeeE
Q 002258 895 AGGSFHFDNLFPGNFYLR 912 (946)
Q Consensus 895 ~~G~~~f~~L~PG~Y~lr 912 (946)
.+-.+.|..+.||.||||
T Consensus 50 ~~~~i~~~~~~~GtYyi~ 67 (70)
T PF04151_consen 50 NDESITFTAPAAGTYYIR 67 (70)
T ss_dssp SEEEEEEEESSSEEEEEE
T ss_pred CccEEEEEcCCCEEEEEE
Confidence 456789999999999997
No 181
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=40.44 E-value=47 Score=35.52 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=30.1
Q ss_pred ccceEEEEEeCCCCEEEEEEeC--CCcEEE--cCC-------CCCccEEEEEEc
Q 002258 51 YSHVTVELRTLDGLVKESTQCA--PNGYYF--IPV-------YDKGSFVIKVNG 93 (946)
Q Consensus 51 ~sgv~V~L~~~~G~~~~~t~t~--~nG~y~--ip~-------l~~G~Y~l~v~~ 93 (946)
-..++|+++|.+|.++++..-. +.|.+. .+. +++|.|.+++.+
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 3579999999999998886542 256644 333 456888887764
No 182
>PRK15316 RatA-like protein; Provisional
Probab=40.11 E-value=41 Score=45.39 Aligned_cols=76 Identities=24% Similarity=0.369 Sum_probs=50.8
Q ss_pred CCCCCceEEEEeccCCeEEeecC-C-CceeEeeeeeEEEEEEecCCCCCcccceEEEEecCCcc-ccc------------
Q 002258 826 PLYDDITYNVEASKPGYYLRQVG-P-NSFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGY-RNN------------ 890 (946)
Q Consensus 826 pl~~~~~y~~~A~k~gy~~~~~~-~-~~F~a~kL~~i~v~v~d~~~~~~pl~gvllsLsg~~~y-R~n------------ 890 (946)
|+.-..+.+++|.+.+- |...+ + .--++.|=-+|-++|.-+|.+|+|.+++-++|.-+.+| |.|
T Consensus 1562 P~~~a~qItl~a~~~~~-~v~~D~t~sA~KAKkGE~ipi~VtttdA~Gnpv~ntpf~LkR~~s~~R~~~~~~~~~v~vt~ 1640 (2683)
T PRK15316 1562 PVAVASQIIVEANDTAQ-FVKVDDTLSALKVKKGEDAVIRVVTKNAQGNSVPNVPFILRREGSKNRQNAEMINKSITVIN 1640 (2683)
T ss_pred ccccceeeeeccccccc-ceeccchhhhhhhccCCceeEEEEeeccCCCccCCCceEEeecccccccccccccceeeeec
Confidence 33334555666665432 22222 1 22345555588888888888899999999999988765 544
Q ss_pred ----------------cccCCCceEEec
Q 002258 891 ----------------SVSWAGGSFHFD 902 (946)
Q Consensus 891 ----------------~~t~~~G~~~f~ 902 (946)
.+|++||++.|.
T Consensus 1641 ~aGaa~~~~~~ss~lYGvTGaDGtltfT 1668 (2683)
T PRK15316 1641 AAGASARMNSSSSLLYGVTGADGTTSFT 1668 (2683)
T ss_pred cccceeeccccceeEEeeecCCceEEEE
Confidence 358999999885
No 183
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=39.85 E-value=89 Score=25.39 Aligned_cols=27 Identities=26% Similarity=0.632 Sum_probs=21.8
Q ss_pred eeeeCCceEEEEE---EcCeeEEEEEEeeC
Q 002258 435 VKQTDNNGNFCFE---VPPGEYRLSAMAAT 461 (946)
Q Consensus 435 ~~~Td~~G~F~f~---l~pG~Y~v~~~~~~ 461 (946)
.+..+++|.|.+. +..|.|.|++...+
T Consensus 5 ~~t~~~~G~Ws~t~~~~~dG~y~itv~a~D 34 (54)
T PF13754_consen 5 TTTVDSDGNWSFTVPALADGTYTITVTATD 34 (54)
T ss_pred EEEECCCCcEEEeCCCCCCccEEEEEEEEe
Confidence 4566899999997 45699999998865
No 184
>KOG3306 consensus Predicted membrane protein [Function unknown]
Probab=38.93 E-value=79 Score=32.02 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=36.8
Q ss_pred EEEEeCCCCEEEEEEeCCCcEEEcCCCCCccEEEEEEcCCCcccCCceeEEE
Q 002258 56 VELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVT 107 (946)
Q Consensus 56 V~L~~~~G~~~~~t~t~~nG~y~ip~l~~G~Y~l~v~~P~G~~~~p~~v~v~ 107 (946)
+.|+=.+|.-+.-..|+ |.|.+....-|+|+|++.+|+ +.++|..++++
T Consensus 13 ~~liv~~~~f~gF~~td--~sf~~~d~ptgty~V~V~~s~-vi~~p~rv~i~ 61 (185)
T KOG3306|consen 13 ARLIVNGGEFVGFASTD--GSFGSEDSPTGTYRVEVPSSD-VIGHPARVSIT 61 (185)
T ss_pred eeeEeccceEEEEEeec--cccccccCCceeEEEEecCcc-eeecceEEEee
Confidence 34444456666666665 899988878999999999998 88888766644
No 185
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=38.76 E-value=2.4e+02 Score=23.78 Aligned_cols=26 Identities=19% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEeeCCccEEEcccCCcc-EEEEEEe
Q 002258 529 VSLTDDSDQFLFRDVLPGK-YRLEVKR 554 (946)
Q Consensus 529 ~~~t~~~G~f~f~~v~PG~-Y~v~v~~ 554 (946)
..+......|.+.+|.||+ |++++..
T Consensus 49 ~~~~~~~~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 49 VTVPGNETSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp EEEETTSSEEEEESCCTTSEEEEEEEE
T ss_pred eeeeeeeeeeeeccCCCCCEEEEEEEE
Confidence 3444555699999999999 9999874
No 186
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=38.32 E-value=75 Score=33.96 Aligned_cols=44 Identities=23% Similarity=0.465 Sum_probs=30.1
Q ss_pred CCcceEEEEEeCCCcEEEEEE--eCCCceEE--Ecc-------ccCceEEEEEec
Q 002258 147 GPSNVNVELLSHSGDLISSVI--TSSEGSYL--FKN-------IIPGKYKLRASH 190 (946)
Q Consensus 147 plaGv~V~L~~~~g~~v~~tt--Td~~G~f~--f~~-------l~pG~Y~l~~~~ 190 (946)
+...|+|++++.+|+++++.. .-+.|.+. .++ +++|.|++.+.+
T Consensus 120 ~a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 120 SAGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred cCCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 346789999999998876643 34456644 444 677888887754
No 187
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=37.80 E-value=62 Score=26.89 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=21.9
Q ss_pred EEEeCCCcccceeeeeCCceEEEEEEcCeeEEE
Q 002258 423 ALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRL 455 (946)
Q Consensus 423 tL~~~~~~~~~~~~~Td~~G~F~f~l~pG~Y~v 455 (946)
++.+-.++. ....++|++|.=.|.++|+.|.|
T Consensus 24 ~~~D~tGn~-~~~vtid~dG~~~f~v~~~s~SV 55 (57)
T PF09154_consen 24 TFYDYTGNS-SETVTIDEDGWGEFPVPPGSVSV 55 (57)
T ss_dssp EEEETTSSS-SSEEEE-TTSEEEEEE-TTEEEE
T ss_pred EEEEccCCC-CCeEEECCCeEEEEEECCCEEEE
Confidence 344433332 24778999999999999999976
No 188
>PRK15255 fimbrial outer membrane usher protein StdB; Provisional
Probab=36.38 E-value=3.9e+02 Score=34.45 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=57.3
Q ss_pred EecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEE-EeeEEEeEEEcCCCCeee-ceEE
Q 002258 269 VSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVKI 345 (946)
Q Consensus 269 ~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-ga~V 345 (946)
.||..|.-.++.|.|=. =+|......-+...++.-....+....+.+... .|.+ .+..+--++.+++|+||| ||.|
T Consensus 690 ~Td~~G~avvP~l~pY~~N~i~ID~~~LP~dvei~~t~~~VvP~~GAvv~~-~F~~~~g~~~l~~l~~~~G~~lP~Ga~V 768 (829)
T PRK15255 690 VTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGYR-KIDASQGEQVLGHIRLADGASPPFGALV 768 (829)
T ss_pred ccCCCCEEEeCCCCCceeeeEEECCcCCCCCEEecccEEEEEecCCCEEEE-EEEEecceEEEEEEEcCCCCcCCCcEEE
Confidence 49999999999998642 233321111011111222222233333322222 3443 233455567888999986 7777
Q ss_pred EEc--cEEeeEeCCCceEEEcccCC
Q 002258 346 LVD--GHERSITDRDGYYKLDQVTS 368 (946)
Q Consensus 346 ~l~--G~~~~~TD~~G~f~~~~L~p 368 (946)
..+ |+.+.....+|.--+.++.+
T Consensus 769 ~~~~~g~~~g~Vg~~G~vyl~gl~~ 793 (829)
T PRK15255 769 VSGKTGRTAGMVGDDGLAYLTGLSG 793 (829)
T ss_pred EcCCCCceeEEEcCCCEEEEECCCC
Confidence 653 67778999999988989974
No 189
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=36.27 E-value=80 Score=34.56 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=30.8
Q ss_pred ccceEEEEEeCCCCEEEEEEeCC--CcE--EEcCC-------CCCccEEEEEEc
Q 002258 51 YSHVTVELRTLDGLVKESTQCAP--NGY--YFIPV-------YDKGSFVIKVNG 93 (946)
Q Consensus 51 ~sgv~V~L~~~~G~~~~~t~t~~--nG~--y~ip~-------l~~G~Y~l~v~~ 93 (946)
...++|+++|.+|.++++..-.+ .|. |..+. +++|.|++++.+
T Consensus 140 a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 140 SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 34799999999999998765422 454 44444 567889888764
No 190
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=34.92 E-value=2.4e+02 Score=29.16 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=33.9
Q ss_pred CCCCcceEEEEEeCCCcE-EEEEEeCCCceEEEccccCceEEEEEecCCce
Q 002258 145 GGGPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASHPNLS 194 (946)
Q Consensus 145 g~plaGv~V~L~~~~g~~-v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~ 194 (946)
..|++|..+.+....|+. -.-..+-.+|+|+..+|.+|.= +...+.|..
T Consensus 61 S~ppaGse~vvv~lGG~rShgviv~~~~~syR~~GL~aGeT-~iY~~eG~~ 110 (203)
T COG4384 61 SVPPAGSEAVVVPLGGKRSHGVIVVSQHGSYRITGLKAGET-VIYNHEGAK 110 (203)
T ss_pred cCCCCCCeEEEEecCCccceeEEEEecCCccccccccCCce-EEEeccCcE
Confidence 369999888887666632 2345667889999999999973 333344443
No 191
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=34.17 E-value=1.2e+02 Score=26.37 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=22.1
Q ss_pred eeEEEEEEecCCCCCcccceEEEEecCCccccccccCCCceEEecccCCCc
Q 002258 858 SQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGN 908 (946)
Q Consensus 858 ~~i~v~v~d~~~~~~pl~gvllsLsg~~~yR~n~~t~~~G~~~f~~L~PG~ 908 (946)
..+.+.|.... ..++.++-|+|+.-++.+ +.. +--.+..|.||+
T Consensus 7 ~~~~~tv~N~g--~~~~~~v~~~l~~P~GW~---~~~--~~~~~~~l~pG~ 50 (78)
T PF10633_consen 7 VTVTLTVTNTG--TAPLTNVSLSLSLPEGWT---VSA--SPASVPSLPPGE 50 (78)
T ss_dssp EEEEEEEE--S--SS-BSS-EEEEE--TTSE--------EEEEE--B-TTS
T ss_pred EEEEEEEEECC--CCceeeEEEEEeCCCCcc---ccC--CccccccCCCCC
Confidence 45677887663 578999999999988877 111 112333677665
No 192
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=33.89 E-value=81 Score=29.84 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.3
Q ss_pred CCCceEEEccccCceEEEEEecC
Q 002258 169 SSEGSYLFKNIIPGKYKLRASHP 191 (946)
Q Consensus 169 d~~G~f~f~~l~pG~Y~l~~~~~ 191 (946)
+..-.+.|.+|+||+|.|.+.|+
T Consensus 40 ~~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 40 GGTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred CCcEEEEECCCCCccEEEEEEEe
Confidence 34458999999999999999774
No 193
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=32.46 E-value=2.7e+02 Score=25.10 Aligned_cols=50 Identities=22% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCcceEEEEEeCCCcEEE-EEEeCCCceEEEccc--cCceEEEEEecCCceEE
Q 002258 147 GPSNVNVELLSHSGDLIS-SVITSSEGSYLFKNI--IPGKYKLRASHPNLSVE 196 (946)
Q Consensus 147 plaGv~V~L~~~~g~~v~-~ttTd~~G~f~f~~l--~pG~Y~l~~~~~g~~~~ 196 (946)
+-..++|.+.+.+|..+. +.+-..||.|...-. .+|.|.|.+...|..+.
T Consensus 30 G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g~~I~ 82 (93)
T smart00557 30 GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIP 82 (93)
T ss_pred CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECCEECC
Confidence 335578888887775444 344455688876544 56889988887776543
No 194
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=32.43 E-value=60 Score=28.50 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=29.0
Q ss_pred eceEEEEccEEeeEeCCCceEEEcccCCce---EEEEEE
Q 002258 341 EGVKILVDGHERSITDRDGYYKLDQVTSNR---YTIEAV 376 (946)
Q Consensus 341 ~ga~V~l~G~~~~~TD~~G~f~~~~L~pG~---Y~I~a~ 376 (946)
++|+|.+||+...-++..=.|.=.+|++|. |++++.
T Consensus 11 adAkl~v~G~~t~~~G~~R~F~T~~L~~G~~y~Y~v~a~ 49 (75)
T TIGR03000 11 ADAKLKVDGKETNGTGTVRTFTTPPLEAGKEYEYTVTAE 49 (75)
T ss_pred CCCEEEECCeEcccCccEEEEECCCCCCCCEEEEEEEEE
Confidence 789999999987777777789999999995 555553
No 195
>PRK10301 hypothetical protein; Provisional
Probab=32.24 E-value=86 Score=30.31 Aligned_cols=43 Identities=5% Similarity=0.130 Sum_probs=26.1
Q ss_pred CccccceEEEEEeCCCCEEEEEE--e-CCCcE-EEcC---CCCCccEEEE
Q 002258 48 RLDYSHVTVELRTLDGLVKESTQ--C-APNGY-YFIP---VYDKGSFVIK 90 (946)
Q Consensus 48 ~i~~sgv~V~L~~~~G~~~~~t~--t-~~nG~-y~ip---~l~~G~Y~l~ 90 (946)
+|......|+|.+.+|..+.... . ..++. +.++ .+.+|.|+|+
T Consensus 55 ~v~~~~s~i~v~~~~g~~v~~~~~~~~~~~~~~~~v~l~~~L~~G~YtV~ 104 (124)
T PRK10301 55 GIEPGFSGATITGPKQENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVD 104 (124)
T ss_pred CccccccEEEEEcCCCCEeccCCccccCCCCcEEEEECCCCCCCccEEEE
Confidence 33333456888888887654432 2 22444 4444 3789999995
No 196
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=31.88 E-value=93 Score=34.68 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=29.9
Q ss_pred ccceEEEEEeCCCCEEEEEEeCC----CcE--EEcCC-------CCCccEEEEEEc
Q 002258 51 YSHVTVELRTLDGLVKESTQCAP----NGY--YFIPV-------YDKGSFVIKVNG 93 (946)
Q Consensus 51 ~sgv~V~L~~~~G~~~~~t~t~~----nG~--y~ip~-------l~~G~Y~l~v~~ 93 (946)
.+.++|+++|.+|.++++..-.+ .|. |.-+. +++|.|++++.+
T Consensus 165 a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a 220 (295)
T PRK05842 165 KGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY 220 (295)
T ss_pred CceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 34799999999999998875433 365 33222 467888887653
No 197
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=31.61 E-value=2e+02 Score=37.24 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=62.0
Q ss_pred EEeCCCceEEeCCCCCC--ceEEEEec--cCCeEEe-------ecC----CCceeEeeeeeEEEEEEecCCCCCccc-ce
Q 002258 814 TSTGADGSFIGGPLYDD--ITYNVEAS--KPGYYLR-------QVG----PNSFSCQKLSQISVRIYSKDDAGEPIP-SV 877 (946)
Q Consensus 814 ~~T~~~G~f~~gpl~~~--~~y~~~A~--k~gy~~~-------~~~----~~~F~a~kL~~i~v~v~d~~~~~~pl~-gv 877 (946)
..||.+|.-.+..|.+= -.+.|... ....++. +.. ...|.+.+--.+.+++++++ |+||| |+
T Consensus 710 ~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~~~F~~~~g~~~l~~l~~~d--G~~lP~Ga 787 (853)
T PRK15248 710 AVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARVNFATISGKAVLISVKMPD--GGIPPMGA 787 (853)
T ss_pred CeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEEEEEEEeeceEEEEEEEcCC--CCcCCCce
Confidence 46999999999876642 22223222 1233333 221 25799999999999999986 88887 55
Q ss_pred EEEEecCCccccccccCCCceEEecccCCC-ceeeE
Q 002258 878 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 912 (946)
Q Consensus 878 llsLsg~~~yR~n~~t~~~G~~~f~~L~PG-~Y~lr 912 (946)
.+...++ +...+.+.+|.+-+.+|.|. +..++
T Consensus 788 ~V~~~~g---~~~g~Vg~~G~vyl~~~~~~~~l~V~ 820 (853)
T PRK15248 788 DVFNGEG---TNIGMVGQSGQIYARIAHPSGSLLVR 820 (853)
T ss_pred EEECCCC---cEEEEEcCCCEEEEEcCCCCceEEEE
Confidence 4443332 34578999999999999975 44443
No 198
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.60 E-value=1.5e+02 Score=30.86 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=25.8
Q ss_pred EEEEEEeCCCceEEEccccCceEEEEEe--cCCceEE
Q 002258 162 LISSVITSSEGSYLFKNIIPGKYKLRAS--HPNLSVE 196 (946)
Q Consensus 162 ~v~~ttTd~~G~f~f~~l~pG~Y~l~~~--~~g~~~~ 196 (946)
++-+-.=.++|.|+|....||.|.|-.. ..+|...
T Consensus 80 ~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~ 116 (215)
T KOG1690|consen 80 VVLSQQYSSEGDFTFTALTPGEHRICIQSNSTAWFNG 116 (215)
T ss_pred EEEeecCCCCCceEEEccCCCceEEEEecccchhhcc
Confidence 4445555688999999999999998764 3466543
No 199
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=31.24 E-value=1.6e+02 Score=38.69 Aligned_cols=111 Identities=14% Similarity=0.338 Sum_probs=71.3
Q ss_pred CCCcEEEcCCCCC-ccEEEEEEcCCCcccCCceeEEEEcC---CCcCCCceeeEEEeCcEEEeEEEeccCCccccCCCCC
Q 002258 72 APNGYYFIPVYDK-GSFVIKVNGPEGWSWNPDKVAVTVDD---TGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGG 147 (946)
Q Consensus 72 ~~nG~y~ip~l~~-G~Y~l~v~~P~G~~~~p~~v~v~vd~---~~~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~g~p 147 (946)
+.+|+-.|..++. --.++....|+.|..++....-..|. ...+....-.|.+.-.-++|.-.+.. +|+|
T Consensus 987 ~~~~~a~F~nlP~~~lltm~l~~pesWlVe~v~a~~DLdNI~Le~~~~~v~A~yele~lLleG~c~d~~-------~g~p 1059 (1470)
T KOG1879|consen 987 DSDGVAKFDNLPASPLLTMNLDVPESWLVEAVRAIYDLDNIKLEDTSSDVTAEYELEYLLLEGHCFDKV-------SGQP 1059 (1470)
T ss_pred cccceeeecCCCcCceeEEeecCCCceEeeeccccccchheeeeccCCchheeeehhhhhccceehhhc-------cCCC
Confidence 4577555666433 33556889999999887544322221 11121222345556666777554432 4799
Q ss_pred CcceEEEEEeCCC-cEEEEEEeCCCceEEEccccCceEEEEEec
Q 002258 148 PSNVNVELLSHSG-DLISSVITSSEGSYLFKNIIPGKYKLRASH 190 (946)
Q Consensus 148 laGv~V~L~~~~g-~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~ 190 (946)
+.|+.++|-+.++ ..+.+.+--.=|.|+|. .-||-+.++...
T Consensus 1060 prGlql~Lgt~~~p~i~DTiVManlGYfQlK-anPG~W~L~lr~ 1102 (1470)
T KOG1879|consen 1060 PRGLQLTLGTSANPHIVDTIVMANLGYFQLK-ANPGAWILRLRD 1102 (1470)
T ss_pred CCceEEEeccCCCCeeeeeEEEeccceeEEe-cCCcceEEEecC
Confidence 9999999977665 34566666778999999 889988887743
No 200
>PRK15198 outer membrane usher protein FimD; Provisional
Probab=31.20 E-value=4.6e+02 Score=34.00 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=60.4
Q ss_pred EEEecCCceEEECCcCCee-EEEEEEEcCCceEEEecCceEEEEEeccceeeeceeEEE-eeEEEeEEEcCCCCeee-ce
Q 002258 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 343 (946)
Q Consensus 267 ~~~TD~~G~f~f~~Lp~G~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-ga 343 (946)
.+.||..|.-.++.|.|=. =+|......-+...++.-....+....+.+.+. .|.+. +..+--++.. +|+||| |+
T Consensus 714 ~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~nvei~~t~~~vvPt~GAvv~v-~F~~~~g~~~ll~~~~-~G~~lP~Ga 791 (860)
T PRK15198 714 GVKTDWRGYAVMPYATVYRYNRVALDTNTMGNSTDVENNVSSVVPTQGALVRA-NFDTRIGVRALITVTQ-GGKPVPFGA 791 (860)
T ss_pred CCEECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEcc-CCCCCCCce
Confidence 3689999999999998632 233331111111111222222333333333332 35432 2233333444 698886 66
Q ss_pred EEEE-ccEEeeEeCCCceEEEcccCC-ceEEEEE
Q 002258 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (946)
Q Consensus 344 ~V~l-~G~~~~~TD~~G~f~~~~L~p-G~Y~I~a 375 (946)
.|.. +|..+...+.+|.--|.++++ |...|+.
T Consensus 792 ~V~~~~~~~~g~Vg~~G~vyl~gl~~~~~l~v~w 825 (860)
T PRK15198 792 LVRETSSGITSMVGDDGQIYLSGLPLSGELLIQW 825 (860)
T ss_pred EEECCCCcEEEEECCCCEEEEEcCCCCceEEEEE
Confidence 6654 566778999999999999986 5666654
No 201
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=30.93 E-value=96 Score=28.37 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=16.1
Q ss_pred EEEcc-ccCceEEEEEe---cCCceEEeeccEEEEE
Q 002258 174 YLFKN-IIPGKYKLRAS---HPNLSVEVRGSTEVEL 205 (946)
Q Consensus 174 f~f~~-l~pG~Y~l~~~---~~g~~~~~~~~~~v~v 205 (946)
..+.. |+||.|+|... .+|... +++..|+|
T Consensus 63 ~~l~~~l~~G~YtV~wrvvs~DGH~~--~G~~~F~V 96 (97)
T PF04234_consen 63 VPLPPPLPPGTYTVSWRVVSADGHPV--SGSFSFTV 96 (97)
T ss_dssp EEESS---SEEEEEEEEEEETTSCEE--EEEEEEEE
T ss_pred EECCCCCCCceEEEEEEEEecCCCCc--CCEEEEEE
Confidence 34455 88999999753 345443 34455544
No 202
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=29.74 E-value=1.2e+02 Score=33.45 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=0.0
Q ss_pred CCCcceEEEE-EeCCCcEEEEEEeCCC-ceEE----EccccCc-eEEEEEecCCceEEeeccEEE
Q 002258 146 GGPSNVNVEL-LSHSGDLISSVITSSE-GSYL----FKNIIPG-KYKLRASHPNLSVEVRGSTEV 203 (946)
Q Consensus 146 ~plaGv~V~L-~~~~g~~v~~ttTd~~-G~f~----f~~l~pG-~Y~l~~~~~g~~~~~~~~~~v 203 (946)
.++.||+|+| .+..+........+.+ |.|. |. +.+| +|+|++..++...- .+..++
T Consensus 58 ~~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~-~~~G~~Y~L~V~~~~~~~~-sa~~~v 120 (298)
T PF14054_consen 58 EPVSGATVTIYEDGQGNEYLFEESSNNDGVYYSSNSFR-GRPGRTYRLEVETPGGKTY-SAETTV 120 (298)
T ss_pred cccCCcEEEEEeCCCcceEeecccCCCcceEEeccccc-ccCCCEEEEEEEECCCCEE-EEEEEE
No 203
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=29.42 E-value=68 Score=40.08 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=42.1
Q ss_pred CCCCCeEEEEEecccchhhhccccceeEEEEeCCCceEEeCCCC-CCceEEEEeccCCeEEeec
Q 002258 785 PPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLY-DDITYNVEASKPGYYLRQV 847 (946)
Q Consensus 785 P~l~gv~I~i~~~~~~~~~~~~~~~~~~~~~T~~~G~f~~gpl~-~~~~y~~~A~k~gy~~~~~ 847 (946)
=||+++.|.++... ....+.+|+.||.-.+.=-| ....-+|+|+|.||+....
T Consensus 14 qpl~~A~V~V~~N~----------t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv~ns~ 67 (807)
T PF10577_consen 14 QPLSDASVEVFGNQ----------TLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYVPNSV 67 (807)
T ss_pred ccCCCCeEEEEece----------eEeecceecCCceEEEEEeccCCCeEEEEEecCCccCCCC
Confidence 48999999998543 35678899999987766434 5577899999999999865
No 204
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=29.39 E-value=3.1e+02 Score=35.41 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=63.2
Q ss_pred EEeCCCceEEeCCCCCC--ceEEEEec--cCCeEEe-------ecC----CCceeEeeeeeEEEEEEecCCCCCccc-ce
Q 002258 814 TSTGADGSFIGGPLYDD--ITYNVEAS--KPGYYLR-------QVG----PNSFSCQKLSQISVRIYSKDDAGEPIP-SV 877 (946)
Q Consensus 814 ~~T~~~G~f~~gpl~~~--~~y~~~A~--k~gy~~~-------~~~----~~~F~a~kL~~i~v~v~d~~~~~~pl~-gv 877 (946)
+.||.+|.-.+..|.+= -.+.|... ...-.+. +.. ...|...+--.+.+++++++ |+||| |+
T Consensus 696 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~~~ll~l~~~~--G~~lP~Ga 773 (836)
T PRK15223 696 VKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKRED--GSAIPFGA 773 (836)
T ss_pred CEECCCCeEEeCCCCCceeceEEECCCCCCCCEEecCcEEEEEecCCcEEEEEEEEeeeEEEEEEEECCC--CCcCCCCe
Confidence 68999999999887652 12222222 1223333 221 24788888889999999886 88887 56
Q ss_pred EEEEecCCccccccccCCCceEEecccCCC-ceeeE
Q 002258 878 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 912 (946)
Q Consensus 878 llsLsg~~~yR~n~~t~~~G~~~f~~L~PG-~Y~lr 912 (946)
.+.+.+. + ....+.+.+|.+-+.+|.|. +..++
T Consensus 774 ~v~~~~~-g-~~~g~Vg~~G~vyl~g~~~~~~l~v~ 807 (836)
T PRK15223 774 QVTVNGQ-D-GSAALVDTDSQVYLTGLADKGELTVK 807 (836)
T ss_pred EEEecCC-C-ceEEEECCCCEEEEEccCCCceEEEE
Confidence 5555433 1 23578999999999999975 44444
No 205
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=29.29 E-value=2.1e+02 Score=25.63 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=29.5
Q ss_pred cccceEEEEEeCCCCEEEEEEeCCCcEEEcCC----CCCccEEEEEEc
Q 002258 50 DYSHVTVELRTLDGLVKESTQCAPNGYYFIPV----YDKGSFVIKVNG 93 (946)
Q Consensus 50 ~~sgv~V~L~~~~G~~~~~t~t~~nG~y~ip~----l~~G~Y~l~v~~ 93 (946)
++.|..|.|. .+|.+.....++ +|.+.+++ -.+|.|.|.+.+
T Consensus 24 ~~~gs~ValS-~dg~l~G~ai~~-sG~ati~l~~~it~~~~~tlTit~ 69 (81)
T PF03785_consen 24 DVPGSYVALS-QDGDLYGKAIVN-SGNATINLTNPITDEGTLTLTITA 69 (81)
T ss_dssp SSTT-EEEEE-ETTEEEEEEE-B-TTEEEEE-SS--TT-SEEEEEEE-
T ss_pred cCCCcEEEEe-cCCEEEEEEEec-CceEEEECCcccCCCceEEEEEEE
Confidence 3557788774 689999998888 99999655 257999998876
No 206
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=27.67 E-value=28 Score=31.97 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCccccceEEEEEeCCCCEEEE--EEeCC-CcEEE--cCC-CCCccEEEEE
Q 002258 47 ARLDYSHVTVELRTLDGLVKES--TQCAP-NGYYF--IPV-YDKGSFVIKV 91 (946)
Q Consensus 47 ~~i~~sgv~V~L~~~~G~~~~~--t~t~~-nG~y~--ip~-l~~G~Y~l~v 91 (946)
.++......|+|++++|..+.. ...+. .-.+. ++. +.+|.|+|+-
T Consensus 28 e~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~w 78 (97)
T PF04234_consen 28 EPVEPGFSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSW 78 (97)
T ss_dssp S---CCC-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEE
T ss_pred CCCccCccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEE
Confidence 3455557788899888754322 22222 23444 666 8999999943
No 207
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=27.18 E-value=2.8e+02 Score=23.36 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCCCcceEEEEEeCCCc--EEEEEEeCCCceEEEccccCc-eEEEEEe
Q 002258 145 GGGPSNVNVELLSHSGD--LISSVITSSEGSYLFKNIIPG-KYKLRAS 189 (946)
Q Consensus 145 g~plaGv~V~L~~~~g~--~v~~ttTd~~G~f~f~~l~pG-~Y~l~~~ 189 (946)
+..+.+-.|.....++. ..........-.|.+.+|.|| .|.+++.
T Consensus 27 ~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~ 74 (85)
T PF00041_consen 27 NGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVR 74 (85)
T ss_dssp SSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEE
T ss_pred CCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEE
Confidence 46777788877766543 233344445559999999999 6887764
No 208
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=27.09 E-value=6.4e+02 Score=32.65 Aligned_cols=96 Identities=15% Similarity=0.220 Sum_probs=63.4
Q ss_pred EEeCCCceEEeCCCCCCc--eEEEEecc--CCeEEe-------ecC----CCceeEeeeeeEEEEEEecCCCCCccc-ce
Q 002258 814 TSTGADGSFIGGPLYDDI--TYNVEASK--PGYYLR-------QVG----PNSFSCQKLSQISVRIYSKDDAGEPIP-SV 877 (946)
Q Consensus 814 ~~T~~~G~f~~gpl~~~~--~y~~~A~k--~gy~~~-------~~~----~~~F~a~kL~~i~v~v~d~~~~~~pl~-gv 877 (946)
+.||.+|.-.++-|.+=. .+.|.... +.-.+. +.. ...|...+--.+.+++.+++ |+||| |+
T Consensus 707 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g~~~ll~l~~~~--G~~lP~Ga 784 (848)
T PRK15298 707 VATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSN--GEPVPFGA 784 (848)
T ss_pred CEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEEEEEEEEeeEEEEEEEECCC--CCcCCCCc
Confidence 699999999998766422 22222221 222232 221 24788888889999999886 88887 56
Q ss_pred EEEEecCCccccccccCCCceEEecccCCCce-eeE
Q 002258 878 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNF-YLR 912 (946)
Q Consensus 878 llsLsg~~~yR~n~~t~~~G~~~f~~L~PG~Y-~lr 912 (946)
.+.+.+.+. +...+.+++|.+-+.+|.|... .++
T Consensus 785 ~v~~~~~~~-~~~g~Vg~~G~vyl~g~~~~~~l~v~ 819 (848)
T PRK15298 785 TASVDGQDA-NLASIVGDKGQVFLSGLPEEGLLLVN 819 (848)
T ss_pred EEEEcCCCC-eeEEEECCCCEEEEEecCCCceEEEE
Confidence 665654422 2347899999999999997644 444
No 209
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=26.51 E-value=1.2e+02 Score=27.47 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=24.2
Q ss_pred cceEEEEEeCCCC----EEEEEEeCC-CcEEE---cCCCCCccEEEEEEc
Q 002258 52 SHVTVELRTLDGL----VKESTQCAP-NGYYF---IPVYDKGSFVIKVNG 93 (946)
Q Consensus 52 sgv~V~L~~~~G~----~~~~t~t~~-nG~y~---ip~l~~G~Y~l~v~~ 93 (946)
..++|++.+++|. ...-...+. +|.|. .|- .+|.|.|.+.-
T Consensus 42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~-~~G~y~i~V~~ 90 (101)
T PF00630_consen 42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPT-EPGKYKISVKI 90 (101)
T ss_dssp SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEES-SSEEEEEEEEE
T ss_pred ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeC-ccEeEEEEEEE
Confidence 4667778777765 333333333 77777 233 67888776653
No 210
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=26.40 E-value=3.2e+02 Score=35.13 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=60.2
Q ss_pred EEeCCCceEEeCCCCCCce--EEEEec--cCCeE-------EeecC----CCceeEeeeeeEEEEEEecCCCCCccc-ce
Q 002258 814 TSTGADGSFIGGPLYDDIT--YNVEAS--KPGYY-------LRQVG----PNSFSCQKLSQISVRIYSKDDAGEPIP-SV 877 (946)
Q Consensus 814 ~~T~~~G~f~~gpl~~~~~--y~~~A~--k~gy~-------~~~~~----~~~F~a~kL~~i~v~v~d~~~~~~pl~-gv 877 (946)
+.||.+|.-.+.-|.+=.. ..|... ..... ..+.. ..+|+..+--.+.+++++++ |+||| |+
T Consensus 659 v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v~F~~~~g~~~l~~l~~~~--G~~lPfGa 736 (801)
T PRK15304 659 VWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKVDFSVLNQRRVMLNVKRAD--GSPLPKGV 736 (801)
T ss_pred eEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEEEEEEEccceEEEEEEEccC--CCcCCCcE
Confidence 4899999998886654211 111111 11222 33332 24788988889999999886 88888 44
Q ss_pred EEEEecCCccccccccCCCceEEecccCCC-ceeeE
Q 002258 878 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 912 (946)
Q Consensus 878 llsLsg~~~yR~n~~t~~~G~~~f~~L~PG-~Y~lr 912 (946)
.+. .+++ +...+.+++|.+-+.+|.|. +..++
T Consensus 737 ~V~--~~~g-~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 737 SIV--DEKG-NYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EEE--CCCC-cEEEEEeCCCEEEEECCCCCceEEEE
Confidence 443 2222 35578899999999999974 45454
No 211
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=26.37 E-value=3.9e+02 Score=32.04 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=31.3
Q ss_pred eEEEeEEEcCCCCeeeceEEEEccEEeeEeCCCce--EEEcccCCceEEEEEEe
Q 002258 326 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGY--YKLDQVTSNRYTIEAVK 377 (946)
Q Consensus 326 ~sV~G~V~d~~G~pl~ga~V~l~G~~~~~TD~~G~--f~~~~L~pG~Y~I~a~~ 377 (946)
..|+..|.|.+|..++.....|+.. .-. ..+.++.+|+|+|.+..
T Consensus 341 ~~vta~V~d~~g~~~~~~~~~v~d~-------s~~vtL~Ls~~~AG~y~Lvv~~ 387 (478)
T PRK13211 341 MNVEATVYNHDGEALGSKSQTVNDG-------SQSVSLDLSKLKAGHHMLVVKA 387 (478)
T ss_pred eEEEEEEEcCCCCeeeeeeEEecCC-------ceeEEEecccCCCceEEEEEEE
Confidence 4678888888888888777666221 222 33458899999988765
No 212
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=79 Score=32.72 Aligned_cols=46 Identities=28% Similarity=0.387 Sum_probs=40.4
Q ss_pred CCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecCC
Q 002258 147 GPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPN 192 (946)
Q Consensus 147 plaGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g 192 (946)
+-.|+.+++..++|+.+....-++.|+|.|.--.+|.|+.-...+-
T Consensus 53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~ 98 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKM 98 (201)
T ss_pred CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCC
Confidence 6678999999999988888888999999999889999999987653
No 213
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.22 E-value=1.8e+02 Score=30.59 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=36.2
Q ss_pred cceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEec--CCceEE
Q 002258 149 SNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASH--PNLSVE 196 (946)
Q Consensus 149 aGv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~--~g~~~~ 196 (946)
.-..+.+.++.|....+..-=..|+|.|+--.+|.|.+-..+ +++...
T Consensus 60 ~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~ 109 (210)
T KOG1691|consen 60 HKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMYEACFTADVPGHKPE 109 (210)
T ss_pred ceEEEEEEcCCCceeehhhccccceEEEEeccCCcEEEEEecccCCCCCC
Confidence 557788888888665544333499999999999999998766 666543
No 214
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=25.07 E-value=70 Score=31.52 Aligned_cols=24 Identities=29% Similarity=0.767 Sum_probs=18.7
Q ss_pred ccCCccEEEEEEeeccccccCCCCeeEee
Q 002258 542 DVLPGKYRLEVKRTSREASSMEDNWCWEQ 570 (946)
Q Consensus 542 ~v~PG~Y~v~v~~~~~~~~~~~~~~cw~~ 570 (946)
.|.||+|++.+...+. ...|-|++
T Consensus 102 ~lk~G~Y~l~~~~~~~-----~~~W~f~k 125 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSG-----KKTWTFTK 125 (140)
T ss_pred CccCCEEEEEEEEEcC-----CcEEEEEE
Confidence 6889999999876532 56788877
No 215
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.79 E-value=2.5e+02 Score=29.63 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=35.9
Q ss_pred cceEEEEEeCCCCEEEEEEeCCCcEEEcCCCCCccEEEEEEc
Q 002258 52 SHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNG 93 (946)
Q Consensus 52 sgv~V~L~~~~G~~~~~t~t~~nG~y~ip~l~~G~Y~l~v~~ 93 (946)
..+.+++.++.|+...+.+--+.|.|.|...++|+|.+-+.+
T Consensus 60 ~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y~~Cf~~ 101 (210)
T KOG1691|consen 60 HKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMYEACFTA 101 (210)
T ss_pred ceEEEEEEcCCCceeehhhccccceEEEEeccCCcEEEEEec
Confidence 357888989999998887766699999999899999997776
No 216
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=23.98 E-value=3.9e+02 Score=34.73 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=60.9
Q ss_pred EEeCCCceEEeCCCCCCceEE-----------EEeccCCeEEeecC----CCceeEeeeeeEEEEEEecCCCCCccc-ce
Q 002258 814 TSTGADGSFIGGPLYDDITYN-----------VEASKPGYYLRQVG----PNSFSCQKLSQISVRIYSKDDAGEPIP-SV 877 (946)
Q Consensus 814 ~~T~~~G~f~~gpl~~~~~y~-----------~~A~k~gy~~~~~~----~~~F~a~kL~~i~v~v~d~~~~~~pl~-gv 877 (946)
+.||.+|.-.+..|.+=..-. ++....-..+.+.. ...|...+--.+.+++++++ |+||| |+
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~~~l~~l~~~d--G~~lPfGa 783 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFAVISGQKAMAVLRLRD--GSHPPFGA 783 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEEEEEEeeeeEEEEEEEcCC--CCcCCCce
Confidence 489999999988766421112 22222223333332 14688888888889999886 78887 45
Q ss_pred EEEEecCCccccccccCCCceEEecccCCC-ceeeE
Q 002258 878 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 912 (946)
Q Consensus 878 llsLsg~~~yR~n~~t~~~G~~~f~~L~PG-~Y~lr 912 (946)
.+....+ +...+.+++|.+-+.+|.|. +..++
T Consensus 784 ~V~~~~g---~~~giVg~~G~vyL~gl~~~~~l~V~ 816 (881)
T PRK15284 784 EVKNDNQ---QQVGLVDDDGNVYLAGVKPGEHMQVF 816 (881)
T ss_pred EEEcCCC---ceEEEEcCCCEEEEEccCCCceEEEE
Confidence 4443332 34578999999999999975 44443
No 217
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=23.86 E-value=1.1e+03 Score=30.56 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=16.1
Q ss_pred EEeCCCceEEEc--cc-cCceEEEEEecCC
Q 002258 166 VITSSEGSYLFK--NI-IPGKYKLRASHPN 192 (946)
Q Consensus 166 ttTd~~G~f~f~--~l-~pG~Y~l~~~~~g 192 (946)
-.+-.||.|+=. .. ..|+|.|.+...+
T Consensus 653 D~~knDGIYS~yft~f~~nGrYsl~V~v~~ 682 (863)
T TIGR00868 653 DTVKNDGIYSRYFTAYDGNGRYSLKVRALG 682 (863)
T ss_pred CccccCceeeeeeecccCCceEEEEEEEeC
Confidence 345577877632 22 4678887776544
No 218
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=22.66 E-value=4.4e+02 Score=34.25 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=60.8
Q ss_pred EEeCCCceEEeCCCCCC--ceEEEEecc--CCeEE-------eecC----CCceeEeeeeeEEEEEEecCCCCCccc-ce
Q 002258 814 TSTGADGSFIGGPLYDD--ITYNVEASK--PGYYL-------RQVG----PNSFSCQKLSQISVRIYSKDDAGEPIP-SV 877 (946)
Q Consensus 814 ~~T~~~G~f~~gpl~~~--~~y~~~A~k--~gy~~-------~~~~----~~~F~a~kL~~i~v~v~d~~~~~~pl~-gv 877 (946)
+.||.+|.-.+..|.+= -...|...+ ..-.+ .+.. ...|...+--.+.+++++++ |+||| |+
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~~~F~~~~g~~~l~~l~~~d--G~~lPfGa 760 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLAD--GDFPPFGA 760 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEEEEEEEEeeeEEEEEEEccC--CCcCCCce
Confidence 68999999998876542 112222221 12222 2322 14688888888899999886 88887 55
Q ss_pred EEEEecCCccccccccCCCceEEecccCCC-ceeeE
Q 002258 878 LLSLSGDDGYRNNSVSWAGGSFHFDNLFPG-NFYLR 912 (946)
Q Consensus 878 llsLsg~~~yR~n~~t~~~G~~~f~~L~PG-~Y~lr 912 (946)
.+....+ +...+.+++|.+-+.+|.|+ +..++
T Consensus 761 ~V~~~~g---~~~giVg~~G~vyl~g~~~~~~l~V~ 793 (881)
T PRK15273 761 EVKNERQ---QQLGLVADDGNAWLAGVKAGETLKVF 793 (881)
T ss_pred EEEcCCC---cEEEEEcCCCEEEEecCCCCceEEEE
Confidence 4442222 34578999999999999975 55444
No 219
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=22.31 E-value=1.1e+03 Score=26.21 Aligned_cols=38 Identities=13% Similarity=0.417 Sum_probs=23.9
Q ss_pred ceEEEEEeCCCcEEEEEEeCCCceEEEc-----cccCceEEEEEe
Q 002258 150 NVNVELLSHSGDLISSVITSSEGSYLFK-----NIIPGKYKLRAS 189 (946)
Q Consensus 150 Gv~V~L~~~~g~~v~~ttTd~~G~f~f~-----~l~pG~Y~l~~~ 189 (946)
|.+|.+.. +|. ..+.+.+.+|.|++. .|..|.|.|.+.
T Consensus 75 g~~v~v~~-~g~-~~t~~~~~~G~ws~t~~~~~~l~~g~~ti~v~ 117 (317)
T PF13753_consen 75 GSTVTVTI-NGT-TGTLTADADGNWSVTVTPSDDLPDGDYTITVT 117 (317)
T ss_pred CCEEEEEE-CCE-EEEEEEecCCcEEEeeccccccccCcceeEEE
Confidence 44444443 443 345567799997764 245788888776
No 220
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.26 E-value=1.3e+02 Score=31.26 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=35.2
Q ss_pred CCcceEEEE----EeCCC--cEEEEEEeCCCceEEE-ccccCceEEEEEecCCceEE
Q 002258 147 GPSNVNVEL----LSHSG--DLISSVITSSEGSYLF-KNIIPGKYKLRASHPNLSVE 196 (946)
Q Consensus 147 plaGv~V~L----~~~~g--~~v~~ttTd~~G~f~f-~~l~pG~Y~l~~~~~g~~~~ 196 (946)
+.+.++.+| .+..| -.+.+..||+.|.-.- ..|.||.|++..++.||.-.
T Consensus 235 GaaDaTAtLPtTLKdSkGaDVpVTsVITnssG~~vTNgqLsaGtYtVTySAsGY~DV 291 (301)
T PF06488_consen 235 GAADATATLPTTLKDSKGADVPVTSVITNSSGNVVTNGQLSAGTYTVTYSASGYADV 291 (301)
T ss_pred cccCceEEcccccccCCCCcceeEEEEEcCCCcEeecCcccCceEEEEEeccccccc
Confidence 444444443 44445 3467889999998654 45799999999999999743
No 221
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.75 E-value=5.8e+02 Score=27.16 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEecC
Q 002258 150 NVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHP 191 (946)
Q Consensus 150 Gv~V~L~~~~g~~v~~ttTd~~G~f~f~~l~pG~Y~l~~~~~ 191 (946)
.+.++|.++.|.++-...-.++|.+++.--++|.|.+-....
T Consensus 72 ~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~CfDNs 113 (236)
T KOG3287|consen 72 DIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCFDNS 113 (236)
T ss_pred ceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEEcCc
Confidence 477788888887777778889999999988999999988654
No 222
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.56 E-value=1.9e+02 Score=36.34 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=42.7
Q ss_pred EEEeEEEcC-CCCeeeceEEEE--ccEEe--eEeCCCceEEEc-ccCCce-EEEEEEeccceecce
Q 002258 327 SVGGRVVDE-NDMGVEGVKILV--DGHER--SITDRDGYYKLD-QVTSNR-YTIEAVKVHYKFNKL 385 (946)
Q Consensus 327 sV~G~V~d~-~G~pl~ga~V~l--~G~~~--~~TD~~G~f~~~-~L~pG~-Y~I~a~~~~y~~~~~ 385 (946)
.|.-.|.|. +-+||++|.|.| |-... ++|+.||.-.+. .-..|+ -+|.+.+++|..+..
T Consensus 2 ~lKV~V~d~~t~qpl~~A~V~V~~N~t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv~ns~ 67 (807)
T PF10577_consen 2 TLKVQVSDASTRQPLSDASVEVFGNQTLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYVPNSV 67 (807)
T ss_pred eEEEEEecccCcccCCCCeEEEEeceeEeecceecCCceEEEEEeccCCCeEEEEEecCCccCCCC
Confidence 344567776 679999999998 43333 489999986662 235676 567899999987765
No 223
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=20.62 E-value=3.8e+02 Score=26.14 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=33.0
Q ss_pred eeEEEeEEEcCCCCeeeceEEEEcc-EE--ee-EeCCCc------------eEEEc-ccC--CceEEEEEEecc
Q 002258 325 GFSVGGRVVDENDMGVEGVKILVDG-HE--RS-ITDRDG------------YYKLD-QVT--SNRYTIEAVKVH 379 (946)
Q Consensus 325 g~sV~G~V~d~~G~pl~ga~V~l~G-~~--~~-~TD~~G------------~f~~~-~L~--pG~Y~I~a~~~~ 379 (946)
.+.|.|.-.+.+|.+|..+.|.+|| +. .+ .....+ .|+++ .++ +|.|+|.+++-.
T Consensus 28 ~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D 101 (131)
T PF03404_consen 28 TVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATD 101 (131)
T ss_dssp EEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEE
T ss_pred EEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEee
Confidence 4678888888878899999999965 31 12 333333 13331 333 499999887643
No 224
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=20.61 E-value=5.2e+02 Score=27.56 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEcCeeEEEEEEeeCCCCCCce--EEcCCeEEEEEc
Q 002258 445 CFEVPPGEYRLSAMAATPESSSGI--LFLPPYADVVVK 480 (946)
Q Consensus 445 ~f~l~pG~Y~v~~~~~~~e~~~G~--~~~p~~~~V~V~ 480 (946)
.+.|++|+|+|++...+ ....|| -|.-.+.+++|.
T Consensus 59 ~i~L~~G~Ytv~A~~g~-~~~~~~d~pyy~G~~~f~I~ 95 (235)
T PF14900_consen 59 SIELPVGSYTVKASYGD-NVAAGFDKPYYEGSTTFTIE 95 (235)
T ss_pred eEeecCCcEEEEEEcCC-CccccccCceeecceeEEEe
Confidence 46799999999998532 222332 122344577773
No 225
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=20.46 E-value=4.1e+02 Score=24.02 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=22.6
Q ss_pred eEEEEEeCCCcEEE--EEEeC----CCceEEE----ccccCceEEEEEe
Q 002258 151 VNVELLSHSGDLIS--SVITS----SEGSYLF----KNIIPGKYKLRAS 189 (946)
Q Consensus 151 v~V~L~~~~g~~v~--~ttTd----~~G~f~f----~~l~pG~Y~l~~~ 189 (946)
+.++|.+.+|.++. .++++ .-|.|++ ...+|+.|+|.+.
T Consensus 31 v~~rv~D~~g~vl~e~~~~a~~g~~~~g~F~~tv~~~~~~~~~g~l~v~ 79 (88)
T PF10648_consen 31 VNIRVRDGHGEVLAEGFVTATGGAPSWGPFEGTVSFPPPPPGKGTLEVF 79 (88)
T ss_pred EEEEEEcCCCcEEEEeeEEeccCCCcccceEEEEEeCCCCCCceEEEEE
Confidence 77888888887763 23321 1244443 3334778887763
No 226
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=20.42 E-value=2.7e+02 Score=27.05 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=22.3
Q ss_pred EEEEEeCCCCEEEEEEeCC---CcE-EEcCC---CCCccEEE
Q 002258 55 TVELRTLDGLVKESTQCAP---NGY-YFIPV---YDKGSFVI 89 (946)
Q Consensus 55 ~V~L~~~~G~~~~~t~t~~---nG~-y~ip~---l~~G~Y~l 89 (946)
.++|++++|..+....+.. |+. +.+|+ |.+|.|+|
T Consensus 63 ~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v 104 (127)
T COG2372 63 GAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTV 104 (127)
T ss_pred eeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEE
Confidence 3567788887766654433 444 55543 47799988
No 227
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.37 E-value=1.9e+03 Score=28.32 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=60.1
Q ss_pred EEEeCCCceEEEccccCceEE-EEEecCCce--EEe-eccEEEEEccCCeeeeeeeeccceEEeEEEee-CCCcee-ceE
Q 002258 165 SVITSSEGSYLFKNIIPGKYK-LRASHPNLS--VEV-RGSTEVELGFENGEVDDIFFAPGYEIRGLVVA-QGNPIL-GVH 238 (946)
Q Consensus 165 ~ttTd~~G~f~f~~l~pG~Y~-l~~~~~g~~--~~~-~~~~~v~v~~~~~~v~~~l~v~g~~v~G~V~~-~G~Pi~-Ga~ 238 (946)
...||..|.-.++.|.|=.+. |.....+.- .++ .....|....+......--...|+.+--+++. +|+||+ ||.
T Consensus 693 ~~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~~~F~t~~g~~~li~l~~~dG~~lPfGa~ 772 (835)
T COG3188 693 GVRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVLADFDTRIGYRALITLRRADGSPLPFGAE 772 (835)
T ss_pred CcEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEEEEEeeeceeEEEEEEECCCCCcCCCceE
Confidence 578999999998888775433 443332221 111 11133333333332221112245555556664 688886 787
Q ss_pred EEEEECCCCcccCCCCCCCccCccceeeEEEecCCceEEECCcCCeeE
Q 002258 239 IYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQY 286 (946)
Q Consensus 239 V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp~G~Y 286 (946)
|+..... ......+.+|+.-+.+|+++..
T Consensus 773 v~~~~~~-------------------~~~g~Vg~~G~vyl~gl~~~~~ 801 (835)
T COG3188 773 VTDEGGG-------------------QNVGIVGDDGQVYLRGLPPKGR 801 (835)
T ss_pred EEECCCc-------------------eEEEEEecCCeEEEecCCCCCe
Confidence 7755431 1456789999999999998763
Done!