BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002259
(946 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 126/170 (74%), Gaps = 3/170 (1%)
Query: 167 TRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLAKGGFLYRADFAQCIGMRDSKEF 226
T+S A AL+GL+F++ G D W V+ FN+L G L R+ F +CIGM S EF
Sbjct: 4 TKSSAAVALKGLQFVTAKV---GNDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDGSDEF 60
Query: 227 ALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEV 286
A+++FD+L+R+R + ++++EL +++ Q+TDQ FD+RL+ FFDMVDKN DGR+ EEV
Sbjct: 61 AVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEV 120
Query: 287 KEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336
KEII LSASANKLS++KE+A+EY ALIMEELDP LGYIE+ LE LLLQ
Sbjct: 121 KEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQ 170
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 46/226 (20%)
Query: 727 LLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRS 786
+ +DGP+G ++D +Y+V++LVG GIG TPF SILK + + +
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSV----------------WYKYC 44
Query: 787 DNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVM----NEVAELDQRG 842
+N+ LK YFYW+ R+ +F+WF ++ +++ E + G
Sbjct: 45 NNATN----------------LKLKKIYFYWLCRDTHAFEWFADLLQLLESQMQERNNAG 88
Query: 843 VIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLS 902
+ + YLT ++E A + H D+++G + +T + RPNW ++
Sbjct: 89 FLSYNIYLTG-WDESQANHFAV-------HHDEEKDVITGLKQKTLYGRPNWDNEFKTIA 140
Query: 903 SKHCNARIGVFYCGAPVLAKELSKLCYEFNQKG--STKFEFHKEHF 946
S+H N RIGVF CG LA+ LSK ++ G F F+KE+F
Sbjct: 141 SQHPNTRIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNKENF 186
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 214 FAQCIGMRDSKEFALELFDALSRRRRLK-VDKISREELYEYWSQITDQSFDSRLQIFFDM 272
+A I D K L ALS R+ + K+++ + S++T L F
Sbjct: 308 YANNINKSDQKT----LCGALSNMRKFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKK 363
Query: 273 VDKNEDGRIAEEEVKE-IIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLE 331
+DKN DG++ ++E+ E +L N+L LK EE I++E+D + GYIE +
Sbjct: 364 LDKNGDGQLDKKELIEGYNVLRNFKNELGELK-NVEEEVDNILKEVDFDKNGYIEYSEFI 422
Query: 332 TLLLQK 337
++ + K
Sbjct: 423 SVCMDK 428
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 218 IGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNE 277
+G RDS+E E+ A + KIS + L ++ + D LQ D D++
Sbjct: 74 MGERDSRE---EIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDG 130
Query: 278 DGRIAEEEVKEII 290
DG + EEE I+
Sbjct: 131 DGEVNEEEFFRIM 143
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 244 KISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEII--MLSASANKLSR 301
K+++ L S++T Q L F +DKN DG++ E+ E ++ S
Sbjct: 339 KLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASM 398
Query: 302 LKEQAEEYAA-LIMEELDPEGLGYIELWQLETLLLQKDTYLN 342
L A E+ +++ +D + GYIE + T+ + + T L+
Sbjct: 399 LDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLS 440
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 244 KISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEII--MLSASANKLSR 301
K+++ L S++T Q L F +DKN DG++ E+ E ++ S
Sbjct: 338 KLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASM 397
Query: 302 LKEQAEEYAA-LIMEELDPEGLGYIELWQLETLLLQKDTYLN 342
L A E+ +++ +D + GYIE + T+ + + T L+
Sbjct: 398 LDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLS 439
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 244 KISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEII--MLSASANKLSR 301
K+++ L S++T Q L F +DKN DG++ E+ E ++ S
Sbjct: 315 KLAQAALLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASM 374
Query: 302 LKEQAEEYAA-LIMEELDPEGLGYIELWQLETLLLQKDTYLN 342
L A E+ +++ +D + GYIE + T+ + + T L+
Sbjct: 375 LDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLS 416
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 849 YLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNA 908
Y+++V+ EG+ + + + ++ AK G+ I ++ ++ ++ K+L KL+S A
Sbjct: 200 YVSAVHTEGNYGESGMEAFKDMS-AKEGISIAHSYKIYSNAGEQSFDKLLKKLTSHLPKA 258
Query: 909 RIGVFYC 915
R+ +C
Sbjct: 259 RVVACFC 265
>pdb|2XZM|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|4 Chain 4, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 265
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 242 VDKISREELYEYWSQI--TDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKL 299
+D +SR+E Y++ + I + +SF L V K+ RIA EE+K ++ S A+
Sbjct: 23 IDPLSRKEWYDFRAPIPFSSKSFGKTL------VTKSSGNRIASEEIKGRVVESTLADLK 76
Query: 300 SRLKEQAEEYAALIMEELD 318
++A L+++E+D
Sbjct: 77 DNSNDKAWRKVKLVIDEVD 95
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 202 KLAKGGFLYRADFAQCIGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQS 261
K+ G FL Q + +D+KE L+ F + KIS + L ++ +
Sbjct: 58 KMNFGDFL--TVMTQKMSEKDTKEEILKAFKLFDDD---ETGKISFKNLKRVAKELGENL 112
Query: 262 FDSRLQIFFDMVDKNEDGRIAEEEVKEII 290
D LQ D D++ DG ++E+E I+
Sbjct: 113 TDEELQEMIDEADRDGDGEVSEQEFLRIM 141
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 216 QCIGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDK 275
Q + +D+KE L+ F + KIS + L ++ + D LQ D D+
Sbjct: 12 QKMSEKDTKEEILKAFKLFDDD---ETGKISFKNLKRVAKELGENLTDEELQEMIDEADR 68
Query: 276 NEDGRIAEEEVKEII 290
+ DG ++E+E I+
Sbjct: 69 DGDGEVSEQEFLRIM 83
>pdb|1L4A|C Chain C, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 83
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 240 LKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKL 299
++V K EE+ + +Q+TD S +S + M++ E+ + E ++ ++ML +L
Sbjct: 4 VEVPKTELEEIQQQCNQVTDDSLESTRR----MLNMCEESK--EAGIRTLVMLDEQGEQL 57
Query: 300 SRLKEQAEE 308
R++E ++
Sbjct: 58 DRIEEGLDQ 66
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 216 QCIGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDK 275
Q + +D+KE L+ F + KIS + L ++ + D LQ D D+
Sbjct: 2 QKMSEKDTKEEILKAFKLFDDD---ETGKISFKNLKRVAKELGENLTDEELQEMIDEADR 58
Query: 276 NEDGRIAEEEVKEII 290
+ DG ++E+E I+
Sbjct: 59 DGDGEVSEQEFLRIM 73
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 645 PQFRYKSGQY--MFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEA 702
P ++ GQY + + PA+ + +S++ P + +++ G Q
Sbjct: 181 PVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREGGGPQ--------- 231
Query: 703 CEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISIL 762
PP G L D KL PYG+ D ++L+ G+G TP +S+L
Sbjct: 232 --PP--GYVSNLLHDHVNVGDQVKLA--APYGSFHIDVDAKTPIVLISGGVGLTPMVSML 285
Query: 763 KDLLNNIVKQ 772
K L +Q
Sbjct: 286 KVALQAPPRQ 295
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 645 PQFRYKSGQY--MFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEA 702
P ++ GQY + + PA+ + +S++ P + +++ G Q
Sbjct: 181 PVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRSYRISVKREGGGPQ--------- 231
Query: 703 CEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISIL 762
PP G L D KL PYG+ D ++L+ G+G TP +S+L
Sbjct: 232 --PP--GYVSNLLHDHVNVGDQVKLA--APYGSFHIDVDAKTPIVLISGGVGLTPMVSML 285
Query: 763 KDLLNNIVKQ 772
K L +Q
Sbjct: 286 KVALQAPPRQ 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,388,227
Number of Sequences: 62578
Number of extensions: 1041203
Number of successful extensions: 2594
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2572
Number of HSP's gapped (non-prelim): 46
length of query: 946
length of database: 14,973,337
effective HSP length: 108
effective length of query: 838
effective length of database: 8,214,913
effective search space: 6884097094
effective search space used: 6884097094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)