Query 002259
Match_columns 946
No_of_seqs 572 out of 4374
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 20:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 5E-95 1.1E-99 867.2 43.1 642 243-946 3-646 (646)
2 PLN02631 ferric-chelate reduct 100.0 3.2E-56 7E-61 528.3 37.0 335 419-854 150-491 (699)
3 PLN02844 oxidoreductase/ferric 100.0 4E-55 8.6E-60 521.6 43.9 437 419-946 153-720 (722)
4 PLN02292 ferric-chelate reduct 100.0 1E-55 2.2E-60 525.3 37.0 339 419-854 167-511 (702)
5 COG4097 Predicted ferric reduc 100.0 1.1E-38 2.4E-43 339.0 29.0 383 425-946 44-435 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 2.7E-31 5.8E-36 279.4 24.3 205 627-946 2-210 (210)
7 cd06184 flavohem_like_fad_nad_ 99.9 2.1E-25 4.6E-30 240.6 25.7 230 622-946 7-243 (247)
8 cd06216 FNR_iron_sulfur_bindin 99.9 1.4E-25 3.1E-30 241.4 24.0 232 611-946 3-243 (243)
9 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.3E-25 2.9E-30 241.3 23.5 228 626-946 2-241 (241)
10 cd06189 flavin_oxioreductase N 99.9 2.1E-25 4.5E-30 237.1 23.4 220 625-946 2-224 (224)
11 cd06197 FNR_like_2 FAD/NAD(P) 99.9 2.4E-25 5.2E-30 235.8 21.7 191 629-946 3-219 (220)
12 cd06198 FNR_like_3 NAD(P) bind 99.9 3.2E-25 7E-30 234.3 22.6 207 634-946 7-215 (216)
13 cd06210 MMO_FAD_NAD_binding Me 99.9 7.2E-25 1.6E-29 234.8 24.7 224 623-946 3-235 (236)
14 PRK08051 fre FMN reductase; Va 99.9 4.2E-25 9E-30 236.1 22.7 223 622-946 3-229 (232)
15 cd06209 BenDO_FAD_NAD Benzoate 99.9 7.7E-25 1.7E-29 233.4 24.6 221 623-946 3-227 (228)
16 cd06212 monooxygenase_like The 99.9 9.3E-25 2E-29 233.4 24.8 225 623-946 2-231 (232)
17 cd06191 FNR_iron_sulfur_bindin 99.9 7.2E-25 1.6E-29 234.1 23.3 226 625-946 2-231 (231)
18 cd06215 FNR_iron_sulfur_bindin 99.9 6.8E-25 1.5E-29 234.2 22.9 225 625-946 2-231 (231)
19 cd06213 oxygenase_e_transfer_s 99.9 1.2E-24 2.6E-29 231.7 24.0 222 623-946 2-227 (227)
20 cd06190 T4MO_e_transfer_like T 99.9 1.1E-24 2.4E-29 232.8 23.1 227 627-946 2-231 (232)
21 cd06217 FNR_iron_sulfur_bindin 99.9 1.5E-24 3.1E-29 232.2 23.9 228 622-946 2-235 (235)
22 cd06187 O2ase_reductase_like T 99.9 1.4E-24 3E-29 230.6 23.3 220 627-946 2-224 (224)
23 cd06194 FNR_N-term_Iron_sulfur 99.9 1.1E-24 2.4E-29 231.2 22.5 216 627-946 2-221 (222)
24 cd06211 phenol_2-monooxygenase 99.9 2.2E-24 4.7E-29 231.5 24.5 227 622-946 7-238 (238)
25 cd06188 NADH_quinone_reductase 99.9 1.6E-24 3.4E-29 238.6 22.7 230 622-946 10-283 (283)
26 cd06214 PA_degradation_oxidore 99.9 5.2E-24 1.1E-28 228.9 25.1 230 622-946 2-240 (241)
27 cd00322 FNR_like Ferredoxin re 99.9 4E-24 8.8E-29 226.5 22.4 208 629-931 3-213 (223)
28 cd06196 FNR_like_1 Ferredoxin 99.9 6.5E-24 1.4E-28 224.7 21.6 213 623-944 2-218 (218)
29 PRK07609 CDP-6-deoxy-delta-3,4 99.9 9.3E-24 2E-28 238.5 24.1 226 621-946 102-332 (339)
30 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.1E-23 2.4E-28 239.1 24.8 230 622-946 2-241 (352)
31 PRK10684 HCP oxidoreductase, N 99.9 1E-23 2.2E-28 237.2 23.2 225 622-946 10-237 (332)
32 PRK11872 antC anthranilate dio 99.9 1.3E-23 2.8E-28 237.0 23.2 223 621-946 106-335 (340)
33 PRK13289 bifunctional nitric o 99.9 2.3E-23 5.1E-28 240.5 25.2 232 621-946 154-392 (399)
34 PF08030 NAD_binding_6: Ferric 99.9 4.9E-24 1.1E-28 213.5 13.7 153 743-929 1-156 (156)
35 cd06221 sulfite_reductase_like 99.9 4.4E-23 9.6E-28 223.3 22.2 206 627-932 2-213 (253)
36 PRK08345 cytochrome-c3 hydroge 99.9 1.5E-22 3.2E-27 223.2 25.8 223 622-932 6-235 (289)
37 cd06183 cyt_b5_reduct_like Cyt 99.9 1E-22 2.3E-27 217.6 23.6 216 625-932 2-225 (234)
38 PRK10926 ferredoxin-NADP reduc 99.9 1.5E-22 3.2E-27 218.5 24.1 217 621-931 4-228 (248)
39 PRK00054 dihydroorotate dehydr 99.9 1.6E-22 3.5E-27 218.6 24.4 209 622-945 5-213 (250)
40 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.4E-22 3E-27 218.5 23.5 209 627-946 2-213 (246)
41 PRK05713 hypothetical protein; 99.9 1E-22 2.2E-27 227.2 21.8 212 622-946 92-308 (312)
42 cd06185 PDR_like Phthalate dio 99.9 4E-22 8.6E-27 209.9 22.0 202 628-946 2-210 (211)
43 PLN03116 ferredoxin--NADP+ red 99.9 1.3E-21 2.7E-26 217.6 25.6 222 622-932 25-282 (307)
44 cd06192 DHOD_e_trans_like FAD/ 99.9 5.9E-22 1.3E-26 213.3 22.2 144 627-835 2-147 (243)
45 cd06220 DHOD_e_trans_like2 FAD 99.9 8E-22 1.7E-26 210.9 22.8 200 624-946 1-200 (233)
46 PRK05464 Na(+)-translocating N 99.9 6.5E-22 1.4E-26 228.5 23.7 230 622-946 134-407 (409)
47 PRK08221 anaerobic sulfite red 99.9 9.6E-22 2.1E-26 213.9 23.3 206 623-932 9-215 (263)
48 cd06219 DHOD_e_trans_like1 FAD 99.9 1.2E-21 2.5E-26 211.6 23.6 144 625-836 2-148 (248)
49 COG1018 Hmp Flavodoxin reducta 99.9 3.2E-21 6.8E-26 208.2 26.0 221 621-946 5-230 (266)
50 cd06208 CYPOR_like_FNR These f 99.9 2.9E-21 6.4E-26 212.8 26.3 222 622-932 9-262 (286)
51 PTZ00274 cytochrome b5 reducta 99.9 1.7E-21 3.7E-26 216.7 24.4 224 619-927 50-281 (325)
52 TIGR01941 nqrF NADH:ubiquinone 99.9 1.7E-21 3.6E-26 224.8 21.8 230 622-946 130-403 (405)
53 PRK06222 ferredoxin-NADP(+) re 99.9 4.1E-21 9E-26 210.9 23.5 200 624-932 2-204 (281)
54 TIGR02911 sulfite_red_B sulfit 99.9 3.3E-21 7.1E-26 209.4 22.0 206 623-932 7-213 (261)
55 PRK05802 hypothetical protein; 99.9 7.8E-21 1.7E-25 211.5 23.0 150 622-836 65-223 (320)
56 cd06182 CYPOR_like NADPH cytoc 99.9 2.6E-20 5.6E-25 202.9 23.3 208 633-933 14-239 (267)
57 PLN03115 ferredoxin--NADP(+) r 99.9 4.3E-20 9.4E-25 207.6 24.4 215 634-933 108-343 (367)
58 PTZ00319 NADH-cytochrome B5 re 99.9 3.8E-20 8.2E-25 204.9 22.5 221 618-931 30-290 (300)
59 cd06200 SiR_like1 Cytochrome p 99.9 5.7E-20 1.2E-24 198.0 22.9 151 635-852 17-176 (245)
60 KOG0534 NADH-cytochrome b-5 re 99.8 7.4E-20 1.6E-24 196.1 22.5 223 620-934 50-279 (286)
61 cd06201 SiR_like2 Cytochrome p 99.8 1.8E-19 3.9E-24 198.7 24.7 211 620-932 44-268 (289)
62 COG0543 UbiB 2-polyprenylpheno 99.8 2.1E-19 4.5E-24 194.0 23.4 202 624-932 10-215 (252)
63 TIGR03224 benzo_boxA benzoyl-C 99.8 3.4E-19 7.4E-24 205.0 25.0 156 622-837 143-324 (411)
64 PLN02252 nitrate reductase [NA 99.8 4.6E-19 1E-23 218.9 24.2 223 619-933 632-880 (888)
65 cd06193 siderophore_interactin 99.8 3.2E-18 7E-23 183.3 21.1 116 626-765 1-142 (235)
66 PF08022 FAD_binding_8: FAD-bi 99.8 1E-20 2.2E-25 176.3 -1.7 100 622-736 2-104 (105)
67 PRK12779 putative bifunctional 99.8 1E-17 2.2E-22 209.8 23.1 211 621-932 648-870 (944)
68 PRK12778 putative bifunctional 99.8 1.5E-17 3.3E-22 206.5 23.3 199 625-932 3-204 (752)
69 KOG0034 Ca2+/calmodulin-depend 99.7 2.1E-17 4.5E-22 167.8 15.5 147 188-339 27-178 (187)
70 PTZ00306 NADH-dependent fumara 99.7 1.2E-16 2.6E-21 205.6 25.1 224 619-933 912-1153(1167)
71 PRK12775 putative trifunctiona 99.7 3E-16 6.6E-21 198.3 23.2 198 625-932 3-204 (1006)
72 COG5126 FRQ1 Ca2+-binding prot 99.7 1.8E-16 3.9E-21 155.5 14.6 139 188-338 14-158 (160)
73 KOG0044 Ca2+ sensor (EF-Hand s 99.6 2.5E-15 5.3E-20 152.7 14.5 149 188-339 23-178 (193)
74 KOG0027 Calmodulin and related 99.6 1.1E-14 2.3E-19 145.2 14.8 134 193-337 7-150 (151)
75 COG5126 FRQ1 Ca2+-binding prot 99.6 3.8E-14 8.3E-19 139.2 14.7 139 148-291 13-155 (160)
76 cd06206 bifunctional_CYPOR The 99.5 1E-13 2.2E-18 159.2 16.2 190 649-934 147-353 (384)
77 cd06199 SiR Cytochrome p450- l 99.5 7.6E-14 1.7E-18 158.7 15.0 189 646-933 129-332 (360)
78 cd06207 CyPoR_like NADPH cytoc 99.5 1.7E-13 3.6E-18 157.3 17.5 179 664-933 161-354 (382)
79 KOG0027 Calmodulin and related 99.5 1.8E-13 3.8E-18 136.5 14.1 135 151-291 4-148 (151)
80 PTZ00183 centrin; Provisional 99.5 6.2E-13 1.3E-17 132.9 16.6 139 190-339 13-157 (158)
81 TIGR01931 cysJ sulfite reducta 99.5 2.3E-13 5E-18 163.9 14.6 126 647-838 367-506 (597)
82 PF01794 Ferric_reduct: Ferric 99.5 2.8E-13 6E-18 130.2 11.4 122 426-579 2-124 (125)
83 KOG0028 Ca2+-binding protein ( 99.5 6.2E-13 1.4E-17 127.4 12.4 133 194-337 33-171 (172)
84 KOG0038 Ca2+-binding kinase in 99.4 7.7E-13 1.7E-17 124.0 11.7 145 190-341 24-182 (189)
85 PTZ00184 calmodulin; Provision 99.4 4.5E-12 9.7E-17 125.1 16.1 136 189-335 6-147 (149)
86 KOG0028 Ca2+-binding protein ( 99.4 2.4E-12 5.2E-17 123.4 13.3 137 149-291 27-169 (172)
87 cd06203 methionine_synthase_re 99.4 7.6E-12 1.6E-16 144.2 20.1 135 664-852 171-315 (398)
88 COG2871 NqrF Na+-transporting 99.4 6E-12 1.3E-16 130.7 14.7 217 636-933 149-398 (410)
89 PF08414 NADPH_Ox: Respiratory 99.4 7.3E-13 1.6E-17 117.1 5.7 99 163-263 1-99 (100)
90 cd06204 CYPOR NADPH cytochrome 99.3 2.5E-11 5.4E-16 140.7 18.6 196 664-932 175-387 (416)
91 PRK06214 sulfite reductase; Pr 99.3 2.5E-11 5.5E-16 142.8 18.6 126 664-852 313-451 (530)
92 cd06202 Nitric_oxide_synthase 99.3 3.3E-11 7.1E-16 139.2 18.3 182 665-932 175-373 (406)
93 PTZ00183 centrin; Provisional 99.3 7E-11 1.5E-15 118.1 16.6 137 149-291 11-153 (158)
94 PF00175 NAD_binding_1: Oxidor 99.3 2.5E-11 5.3E-16 113.7 10.4 107 748-926 1-109 (109)
95 PRK10953 cysJ sulfite reductas 99.2 8.4E-11 1.8E-15 141.2 15.6 125 648-838 371-509 (600)
96 KOG0037 Ca2+-binding protein, 99.2 2.5E-10 5.5E-15 115.6 14.5 158 156-334 58-218 (221)
97 PTZ00184 calmodulin; Provision 99.2 3.9E-10 8.4E-15 111.3 14.9 135 151-291 7-147 (149)
98 KOG0031 Myosin regulatory ligh 99.1 3.6E-09 7.9E-14 101.0 15.0 130 191-335 29-164 (171)
99 PF00970 FAD_binding_6: Oxidor 99.1 4.1E-10 8.8E-15 103.8 8.0 91 623-736 1-97 (99)
100 PF13499 EF-hand_7: EF-hand do 99.0 1E-09 2.2E-14 93.2 8.3 66 265-334 1-66 (66)
101 PRK06567 putative bifunctional 99.0 5.8E-09 1.3E-13 128.2 14.9 117 623-766 792-913 (1028)
102 KOG0036 Predicted mitochondria 98.9 1E-08 2.2E-13 112.2 12.7 130 194-339 14-149 (463)
103 KOG4223 Reticulocalbin, calume 98.9 2.6E-08 5.7E-13 106.6 13.7 168 156-331 114-300 (325)
104 KOG0036 Predicted mitochondria 98.8 2.3E-08 5E-13 109.5 12.8 168 152-335 11-182 (463)
105 KOG0030 Myosin essential light 98.8 5.5E-08 1.2E-12 91.6 11.8 141 150-335 6-150 (152)
106 KOG0037 Ca2+-binding protein, 98.8 9.8E-08 2.1E-12 97.1 14.3 128 194-338 57-190 (221)
107 KOG0034 Ca2+/calmodulin-depend 98.8 8.2E-08 1.8E-12 98.1 13.0 134 151-292 29-175 (187)
108 KOG0031 Myosin regulatory ligh 98.8 8.5E-08 1.9E-12 91.8 12.0 134 150-291 27-164 (171)
109 KOG0030 Myosin essential light 98.7 1.1E-07 2.3E-12 89.7 11.0 83 192-291 67-150 (152)
110 KOG3378 Globins and related he 98.7 2.3E-07 4.9E-12 96.4 13.0 125 621-767 149-286 (385)
111 PLN02964 phosphatidylserine de 98.6 1.1E-07 2.4E-12 113.3 11.4 98 191-292 140-243 (644)
112 KOG4223 Reticulocalbin, calume 98.6 1.6E-07 3.4E-12 100.7 10.2 173 154-335 76-268 (325)
113 cd05022 S-100A13 S-100A13: S-1 98.6 1.2E-07 2.5E-12 85.4 7.3 68 264-337 8-76 (89)
114 cd05026 S-100Z S-100Z: S-100Z 98.5 2.5E-07 5.4E-12 84.3 7.3 70 264-336 10-81 (93)
115 KOG1158 NADP/FAD dependent oxi 98.5 9.2E-07 2E-11 105.2 13.3 128 741-933 489-617 (645)
116 cd05027 S-100B S-100B: S-100B 98.5 5.2E-07 1.1E-11 81.2 8.2 67 264-336 8-79 (88)
117 PF13499 EF-hand_7: EF-hand do 98.5 2.7E-07 5.8E-12 78.2 5.7 61 227-290 2-66 (66)
118 KOG0377 Protein serine/threoni 98.4 4.7E-06 1E-10 91.7 15.0 71 264-338 547-617 (631)
119 PLN02964 phosphatidylserine de 98.4 1.9E-06 4.2E-11 102.9 12.5 118 206-338 118-245 (644)
120 KOG0044 Ca2+ sensor (EF-Hand s 98.4 2.1E-06 4.6E-11 87.9 10.7 104 223-336 24-128 (193)
121 COG0369 CysJ Sulfite reductase 98.4 1E-05 2.2E-10 96.6 18.0 174 666-933 372-559 (587)
122 KOG2562 Protein phosphatase 2 98.4 1.9E-06 4.1E-11 96.2 10.8 178 154-339 224-426 (493)
123 cd05031 S-100A10_like S-100A10 98.4 1.3E-06 2.8E-11 79.9 8.0 72 264-338 8-81 (94)
124 cd05025 S-100A1 S-100A1: S-100 98.3 1.6E-06 3.5E-11 78.8 8.0 70 264-336 9-80 (92)
125 cd00252 SPARC_EC SPARC_EC; ext 98.3 1.5E-06 3.3E-11 82.1 7.6 62 262-335 46-107 (116)
126 KOG4666 Predicted phosphate ac 98.3 1.2E-06 2.7E-11 93.1 6.8 124 205-341 240-364 (412)
127 cd00213 S-100 S-100: S-100 dom 98.2 2.3E-06 5E-11 77.1 6.9 70 264-336 8-79 (88)
128 cd05022 S-100A13 S-100A13: S-1 98.2 3.2E-06 6.9E-11 76.1 7.7 64 226-292 9-75 (89)
129 smart00027 EH Eps15 homology d 98.2 3.3E-06 7.2E-11 77.4 8.0 64 264-337 10-73 (96)
130 cd00052 EH Eps15 homology doma 98.2 2.7E-06 5.9E-11 72.0 6.2 61 267-337 2-62 (67)
131 KOG4251 Calcium binding protei 98.2 5.3E-06 1.1E-10 84.9 9.1 178 151-334 97-307 (362)
132 cd05023 S-100A11 S-100A11: S-1 98.2 5.5E-06 1.2E-10 74.7 8.3 67 264-336 9-80 (89)
133 PF13833 EF-hand_8: EF-hand do 98.2 3.2E-06 7E-11 68.6 6.2 50 242-291 2-52 (54)
134 cd05027 S-100B S-100B: S-100B 98.2 5.7E-06 1.2E-10 74.5 8.1 65 226-292 9-79 (88)
135 cd05026 S-100Z S-100Z: S-100Z 98.2 6.6E-06 1.4E-10 74.9 8.6 65 226-292 11-81 (93)
136 cd05029 S-100A6 S-100A6: S-100 98.2 6E-06 1.3E-10 74.4 8.0 66 265-336 11-79 (88)
137 PRK05419 putative sulfite oxid 98.1 4.6E-05 9.9E-10 79.5 13.0 127 457-617 68-194 (205)
138 cd05025 S-100A1 S-100A1: S-100 98.0 1.8E-05 3.9E-10 72.0 8.5 66 225-292 9-80 (92)
139 PF00036 EF-hand_1: EF hand; 98.0 6.1E-06 1.3E-10 57.9 3.7 28 265-292 1-28 (29)
140 cd05031 S-100A10_like S-100A10 98.0 2.2E-05 4.7E-10 71.7 8.2 64 226-291 9-78 (94)
141 KOG2643 Ca2+ binding protein, 98.0 3E-05 6.5E-10 86.1 10.4 154 162-337 293-454 (489)
142 KOG2643 Ca2+ binding protein, 98.0 6.9E-05 1.5E-09 83.3 13.2 156 163-335 207-383 (489)
143 cd00051 EFh EF-hand, calcium b 98.0 1.2E-05 2.6E-10 65.8 5.7 61 266-334 2-62 (63)
144 PF13833 EF-hand_8: EF-hand do 97.9 2.8E-05 6.2E-10 63.0 6.2 53 277-336 1-53 (54)
145 cd05029 S-100A6 S-100A6: S-100 97.9 6.3E-05 1.4E-09 67.7 8.5 65 227-292 12-79 (88)
146 cd05023 S-100A11 S-100A11: S-1 97.9 6.9E-05 1.5E-09 67.6 8.5 66 226-292 10-80 (89)
147 cd00051 EFh EF-hand, calcium b 97.8 6.1E-05 1.3E-09 61.5 7.5 61 227-290 2-62 (63)
148 cd00052 EH Eps15 homology doma 97.8 6.7E-05 1.5E-09 63.3 7.3 60 228-292 2-61 (67)
149 cd05030 calgranulins Calgranul 97.8 9.6E-05 2.1E-09 66.6 8.0 69 265-336 9-79 (88)
150 smart00027 EH Eps15 homology d 97.7 0.00014 3E-09 66.7 8.1 62 226-292 11-72 (96)
151 cd00213 S-100 S-100: S-100 dom 97.6 0.00022 4.7E-09 64.2 7.9 65 226-292 9-79 (88)
152 cd05030 calgranulins Calgranul 97.6 0.00024 5.2E-09 64.0 7.8 66 227-293 10-80 (88)
153 PRK12309 transaldolase/EF-hand 97.6 0.00038 8.1E-09 79.5 10.9 56 260-336 330-385 (391)
154 KOG0038 Ca2+-binding kinase in 97.5 0.00021 4.5E-09 68.1 6.5 94 194-291 74-176 (189)
155 cd00252 SPARC_EC SPARC_EC; ext 97.5 0.00031 6.8E-09 66.5 7.8 59 225-290 48-106 (116)
156 KOG0751 Mitochondrial aspartat 97.5 0.00065 1.4E-08 76.3 11.1 128 206-337 50-208 (694)
157 COG2717 Predicted membrane pro 97.5 0.001 2.2E-08 68.6 11.3 122 462-617 73-194 (209)
158 PF13202 EF-hand_5: EF hand; P 97.4 0.00013 2.9E-09 49.3 3.2 25 266-290 1-25 (25)
159 PF00036 EF-hand_1: EF hand; 97.4 0.00013 2.8E-09 51.2 3.2 27 310-336 2-28 (29)
160 KOG0041 Predicted Ca2+-binding 97.4 0.00027 5.8E-09 71.0 6.3 67 264-338 99-165 (244)
161 PF14658 EF-hand_9: EF-hand do 97.4 0.00027 5.8E-09 59.2 5.1 62 268-336 2-64 (66)
162 PF13405 EF-hand_6: EF-hand do 97.4 0.00019 4E-09 51.2 3.5 27 265-291 1-27 (31)
163 KOG1159 NADP-dependent flavopr 97.3 0.0024 5.2E-08 72.5 12.6 88 654-767 358-456 (574)
164 cd05024 S-100A10 S-100A10: A s 97.2 0.0009 2E-08 60.1 6.7 67 266-336 10-76 (91)
165 KOG4251 Calcium binding protei 97.0 0.00092 2E-08 68.9 5.6 132 194-335 101-263 (362)
166 KOG0041 Predicted Ca2+-binding 97.0 0.0039 8.4E-08 62.8 9.1 99 226-331 100-198 (244)
167 PF14788 EF-hand_10: EF hand; 96.9 0.0032 6.9E-08 49.9 6.1 49 244-292 1-49 (51)
168 PRK12309 transaldolase/EF-hand 96.9 0.0026 5.6E-08 72.8 8.0 58 219-292 328-385 (391)
169 PF14658 EF-hand_9: EF-hand do 96.8 0.0032 7E-08 52.8 6.2 59 230-291 3-63 (66)
170 KOG0040 Ca2+-binding actin-bun 96.7 0.013 2.8E-07 73.6 12.6 132 188-334 2247-2396(2399)
171 COG2375 ViuB Siderophore-inter 96.7 0.26 5.7E-06 53.1 21.1 122 621-766 17-166 (265)
172 PF13202 EF-hand_5: EF hand; P 96.6 0.0023 5E-08 43.2 3.0 24 311-334 2-25 (25)
173 KOG4065 Uncharacterized conser 96.5 0.0055 1.2E-07 56.3 5.8 72 261-333 63-142 (144)
174 cd05024 S-100A10 S-100A10: A s 96.3 0.013 2.9E-07 52.7 6.9 50 243-292 22-76 (91)
175 KOG0751 Mitochondrial aspartat 96.2 0.04 8.7E-07 62.5 12.0 134 156-292 34-207 (694)
176 PF12763 EF-hand_4: Cytoskelet 96.0 0.02 4.2E-07 53.2 6.8 50 242-293 23-72 (104)
177 KOG0039 Ferric reductase, NADH 96.0 0.079 1.7E-06 65.1 14.1 80 205-291 1-88 (646)
178 PF10591 SPARC_Ca_bdg: Secrete 95.9 0.0043 9.4E-08 58.6 2.2 63 260-332 50-112 (113)
179 PF12763 EF-hand_4: Cytoskelet 95.8 0.031 6.7E-07 51.9 7.3 63 263-336 9-71 (104)
180 KOG0377 Protein serine/threoni 95.7 0.023 5.1E-07 63.5 7.2 132 156-292 465-615 (631)
181 KOG2562 Protein phosphatase 2 95.6 0.034 7.3E-07 63.1 8.1 120 160-288 283-420 (493)
182 PF13405 EF-hand_6: EF-hand do 95.6 0.013 2.8E-07 41.7 3.1 26 311-336 3-28 (31)
183 PF14788 EF-hand_10: EF hand; 95.2 0.05 1.1E-06 43.3 5.5 48 280-335 1-48 (51)
184 smart00054 EFh EF-hand, calciu 94.9 0.026 5.6E-07 37.9 3.0 26 266-291 2-27 (29)
185 KOG0046 Ca2+-binding actin-bun 94.7 0.092 2E-06 60.3 8.2 66 265-336 20-85 (627)
186 KOG3866 DNA-binding protein of 94.0 0.086 1.9E-06 56.5 5.5 93 245-337 224-325 (442)
187 KOG0040 Ca2+-binding actin-bun 93.6 0.25 5.5E-06 62.7 9.2 93 230-332 2258-2357(2399)
188 smart00054 EFh EF-hand, calciu 93.1 0.12 2.7E-06 34.4 3.4 26 311-336 3-28 (29)
189 PF10591 SPARC_Ca_bdg: Secrete 92.8 0.053 1.1E-06 51.3 1.6 58 226-288 55-112 (113)
190 KOG4347 GTPase-activating prot 91.6 0.38 8.2E-06 57.1 6.9 60 223-286 553-612 (671)
191 PF08021 FAD_binding_9: Sidero 91.3 1.1 2.3E-05 42.7 8.6 89 625-736 1-117 (117)
192 KOG0169 Phosphoinositide-speci 91.2 1.9 4.1E-05 52.4 12.3 130 194-336 136-274 (746)
193 KOG1029 Endocytic adaptor prot 90.2 2.2 4.7E-05 51.5 11.3 61 265-335 196-256 (1118)
194 KOG1707 Predicted Ras related/ 89.7 2.4 5.2E-05 50.2 11.1 174 144-335 184-376 (625)
195 PF09279 EF-hand_like: Phospho 89.4 0.98 2.1E-05 39.9 6.2 71 265-338 1-71 (83)
196 PLN02952 phosphoinositide phos 87.1 3.4 7.5E-05 50.0 10.5 91 243-336 15-110 (599)
197 KOG1707 Predicted Ras related/ 86.5 3.5 7.6E-05 48.9 9.8 147 191-339 192-346 (625)
198 KOG4666 Predicted phosphate ac 86.1 1.6 3.6E-05 47.6 6.4 95 194-292 259-359 (412)
199 KOG0046 Ca2+-binding actin-bun 85.7 2.4 5.3E-05 49.2 7.8 24 378-401 215-238 (627)
200 PF05042 Caleosin: Caleosin re 84.8 5.2 0.00011 40.4 8.8 67 263-333 95-163 (174)
201 KOG4065 Uncharacterized conser 82.7 2.8 6E-05 39.1 5.4 56 230-288 72-141 (144)
202 PF09279 EF-hand_like: Phospho 82.6 2.5 5.4E-05 37.3 5.1 62 227-292 2-69 (83)
203 KOG4578 Uncharacterized conser 82.1 1 2.2E-05 49.2 2.7 67 265-338 334-400 (421)
204 KOG3555 Ca2+-binding proteogly 80.8 1.5 3.3E-05 48.1 3.6 63 263-337 249-311 (434)
205 KOG0035 Ca2+-binding actin-bun 77.6 18 0.00039 45.4 11.7 94 194-288 747-848 (890)
206 KOG0169 Phosphoinositide-speci 73.4 14 0.0003 45.3 9.1 64 226-292 137-200 (746)
207 PF09069 EF-hand_3: EF-hand; 72.5 25 0.00054 31.9 8.4 70 263-339 2-78 (90)
208 KOG4578 Uncharacterized conser 69.9 2.7 5.8E-05 46.0 2.0 61 230-293 338-399 (421)
209 PF05517 p25-alpha: p25-alpha 69.5 28 0.0006 34.8 9.0 67 228-294 2-71 (154)
210 KOG3555 Ca2+-binding proteogly 64.7 19 0.0004 40.1 7.0 25 155-179 211-235 (434)
211 PF05042 Caleosin: Caleosin re 63.8 32 0.0007 34.9 8.0 127 158-291 10-165 (174)
212 KOG1029 Endocytic adaptor prot 61.1 14 0.0003 45.0 5.7 62 154-218 194-255 (1118)
213 KOG2243 Ca2+ release channel ( 61.0 19 0.00042 46.0 6.9 59 269-336 4062-4120(5019)
214 PF08726 EFhand_Ca_insen: Ca2+ 57.7 3.2 7E-05 35.5 -0.1 30 261-291 3-32 (69)
215 PRK10639 formate dehydrogenase 54.5 1.2E+02 0.0026 32.0 11.0 23 562-584 146-169 (211)
216 KOG1265 Phospholipase C [Lipid 51.5 1.5E+02 0.0032 37.4 12.0 126 205-336 161-299 (1189)
217 KOG0998 Synaptic vesicle prote 51.3 13 0.00029 47.3 3.7 65 264-338 283-347 (847)
218 KOG4347 GTPase-activating prot 50.6 20 0.00043 43.2 4.7 77 245-330 535-612 (671)
219 KOG0035 Ca2+-binding actin-bun 50.5 34 0.00074 43.1 6.8 74 263-339 746-819 (890)
220 PF09068 EF-hand_2: EF hand; 46.7 1.9E+02 0.0042 27.9 10.1 102 229-335 4-124 (127)
221 PLN02952 phosphoinositide phos 45.4 79 0.0017 38.7 8.8 83 205-291 13-109 (599)
222 PF00033 Cytochrom_B_N: Cytoch 44.3 1.3E+02 0.0028 30.3 9.3 26 461-486 45-70 (188)
223 PF05517 p25-alpha: p25-alpha 44.0 68 0.0015 32.1 6.8 65 266-336 1-69 (154)
224 PF01292 Ni_hydr_CYTB: Prokary 43.8 2.1E+02 0.0046 28.7 10.7 22 463-484 43-64 (182)
225 PF14513 DAG_kinase_N: Diacylg 41.5 73 0.0016 31.3 6.3 69 243-320 6-81 (138)
226 PF09842 DUF2069: Predicted me 38.3 3.4E+02 0.0074 25.5 12.4 103 386-548 3-105 (109)
227 PF09068 EF-hand_2: EF hand; 37.2 1.9E+02 0.0042 27.9 8.5 78 194-291 41-124 (127)
228 KOG1955 Ral-GTPase effector RA 36.8 49 0.0011 38.5 4.9 48 205-255 244-292 (737)
229 PF00404 Dockerin_1: Dockerin 36.5 41 0.00088 21.9 2.4 17 274-290 1-17 (21)
230 PF08414 NADPH_Ox: Respiratory 35.9 1.2E+02 0.0026 27.9 6.3 63 264-336 30-92 (100)
231 PF13301 DUF4079: Protein of u 35.8 2.3E+02 0.0051 29.0 9.2 87 462-584 79-166 (175)
232 KOG0042 Glycerol-3-phosphate d 34.1 52 0.0011 39.2 4.7 64 265-336 594-657 (680)
233 KOG1955 Ral-GTPase effector RA 33.9 60 0.0013 37.8 5.0 71 225-300 231-302 (737)
234 PF01794 Ferric_reduct: Ferric 31.0 1.2E+02 0.0026 28.3 6.0 52 527-585 2-54 (125)
235 KOG4403 Cell surface glycoprot 29.4 6.4E+02 0.014 29.3 11.8 82 205-293 41-130 (575)
236 cd07313 terB_like_2 tellurium 29.0 1.5E+02 0.0031 27.1 6.0 81 206-291 13-99 (104)
237 PF14358 DUF4405: Domain of un 28.2 60 0.0013 27.1 3.0 24 461-484 40-63 (64)
238 PRK10263 DNA translocase FtsK; 27.5 6.6E+02 0.014 33.8 13.1 18 465-482 113-130 (1355)
239 PF04876 Tenui_NCP: Tenuivirus 26.7 2.1E+02 0.0044 28.3 6.5 35 303-340 130-164 (175)
240 PF01502 PRA-CH: Phosphoribosy 26.4 74 0.0016 27.8 3.2 25 28-53 32-56 (75)
241 cd06395 PB1_Map2k5 PB1 domain 25.5 73 0.0016 28.0 3.0 44 244-292 22-68 (91)
242 PF14513 DAG_kinase_N: Diacylg 25.1 58 0.0012 32.0 2.6 70 207-277 6-82 (138)
243 COG4097 Predicted ferric reduc 24.9 1.6E+02 0.0034 33.7 6.2 57 521-585 39-96 (438)
244 KOG4826 C-8,7 sterol isomerase 24.7 1.9E+02 0.0041 30.3 6.2 21 464-484 54-74 (229)
245 PF13706 PepSY_TM_3: PepSY-ass 23.7 88 0.0019 23.2 2.8 18 462-479 4-21 (37)
246 TIGR01848 PHA_reg_PhaR polyhyd 23.4 1.5E+02 0.0034 27.6 4.8 66 271-338 10-79 (107)
247 PF12174 RST: RCD1-SRO-TAF4 (R 23.3 1.7E+02 0.0037 25.2 4.8 49 243-294 7-55 (70)
248 KOG2557 Uncharacterized conser 22.2 2.1E+02 0.0046 32.5 6.4 63 227-291 59-121 (427)
249 TIGR02125 CytB-hydogenase Ni/F 22.0 8.8E+02 0.019 25.0 11.2 24 462-485 48-71 (211)
250 COG4485 Predicted membrane pro 21.4 2.2E+02 0.0047 35.2 6.8 51 562-618 128-180 (858)
251 KOG1264 Phospholipase C [Lipid 21.3 4.4E+02 0.0096 33.2 9.3 138 194-336 144-293 (1267)
252 cd03497 SQR_TypeB_1_TM Succina 20.4 8.3E+02 0.018 25.6 10.4 22 464-485 8-30 (207)
253 KOG2871 Uncharacterized conser 20.1 70 0.0015 36.1 2.3 65 261-332 306-370 (449)
254 KOG4004 Matricellular protein 20.0 43 0.00093 34.5 0.6 51 270-330 193-244 (259)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-95 Score=867.19 Aligned_cols=642 Identities=55% Similarity=0.926 Sum_probs=562.9
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCC
Q 002259 243 DKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGL 322 (946)
Q Consensus 243 G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~d 322 (946)
| |+++||. +.+.+.|+++|.+|+++|. +||.++.+|+.++++..+..+.+..++++.+++...+|++.|.++.
T Consensus 3 ~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 3 G-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred C-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 7 9999998 6778899999999999998 9999999999999998887777777889999999999999999999
Q ss_pred CcccHHHHHHHHHhCCCccc-cccccccchhhhhhhhcccccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 002259 323 GYIELWQLETLLLQKDTYLN-YSQALSYTSQALSQNLQGLRKKNRIKRMSTEFLYYLQENWRRLWVLSLWILIMIGLFTW 401 (946)
Q Consensus 323 G~Is~eEF~~ll~~~p~~~~-~s~~l~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~i~~~~~~~i~l~~~ 401 (946)
|++.++++..++.+.|.... ........+.+.++.+.+.+ .++..+...+...+++++|.+.+.+++|+++++++|.|
T Consensus 76 ~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~ 154 (646)
T KOG0039|consen 76 GYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTR-RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTW 154 (646)
T ss_pred ceeeecchhHHHHhchHHHHHHHHHHHHHHhhhcccccccc-ccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHH
Confidence 99999999999999996321 11100001334444444433 34455666777788999999999999999999999999
Q ss_pred hhhhccccchhhhhcceeeecchhhhhhhhHHHHHHHhhhhhhhhhhc-ccccCccccCcchhhHHHHHHHHHHHHHHHh
Q 002259 402 KFFQYKHKDAFHVMGYCLLTAKGAAETLKFNMALILLPVCRNTITWLR-STRLGFFVPFDDNINFHKTIAAAIVVGVILH 480 (946)
Q Consensus 402 ~~~~y~~~~~~~~~g~~~~~ar~~a~~~~~n~~lill~~~Rn~l~~Lr-~~~~~~~ip~d~~~~fHk~ig~~~~v~~~lH 480 (946)
++.+|...+.+.+||+++++++++|.++++|++++++++|||.++||+ .+.+..++|+|+++.||+.+|.....+..+|
T Consensus 155 ~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H 234 (646)
T KOG0039|consen 155 RFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLH 234 (646)
T ss_pred HHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHH
Confidence 999999877889999999999999999999999999999999999999 6677788999999999999999999999999
Q ss_pred hhhhhcccccccccCCchhhHHHhhhhhCCCCCchhhhcccchhhHHHHHHHHHHHHHHHhhHHHHhhccCCCCCccccc
Q 002259 481 VGNHLACDFPRLISSSESDYHRYLSSSFGKHKPTYWDLVKGAEGITGILMVIFMAIAFILATRWFRRNLIKLPKPFDRLT 560 (946)
Q Consensus 481 ~~~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~r~~ 560 (946)
.++|.+|.+..++++....+.......++ ++.|++++.++.++||++++++|++|+++|++++||+
T Consensus 235 ~w~~~~~~~~~~ih~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~------------ 300 (646)
T KOG0039|consen 235 IWLHLVNFFPFLVHGLEYTISLASELFFL--PKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRR------------ 300 (646)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhccc--chhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHH------------
Confidence 99999999988888753333222333333 4567889999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhhcccccceeeehhhhhhhhhhhcceeeeeeeeeeeEEEEEEEEecCCEEEEE
Q 002259 561 GFNAFWYSHHLFVIVYILLIVHGILLFLVHKWYLKTTWMYLAVPVLAYAGERTLRFFRSGFSTVRLLKVAIYPGNVLTLQ 640 (946)
Q Consensus 561 ~Ye~F~~~H~l~~i~~ill~~H~~~~~~~~~w~~~~~w~~~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~ 640 (946)
.||+|||+||+++++|+++++||...++. .+|+|+++|+++|++||++|+.|+ ..+++++++..+|+++++|+
T Consensus 301 ~~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~L~ 373 (646)
T KOG0039|consen 301 FYEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLELI 373 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEEEE
Confidence 59999999999999999999999854432 689999999999999999999988 57899999999999999999
Q ss_pred EECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEcCCchHHHHHHHhhcCCCCCCCCCCcccccccc
Q 002259 641 MSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACEPPVAGKSGLLRADETT 720 (946)
Q Consensus 641 l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~ 720 (946)
+++|++++|+||||+||+||.++.||||||||+|+|+|+++++|||+.||||++|++.+.+.++++..+..
T Consensus 374 ~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~~--------- 444 (646)
T KOG0039|consen 374 MSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDKS--------- 444 (646)
T ss_pred EeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhccccccccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999865554332210
Q ss_pred cCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCcc
Q 002259 721 KKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRV 800 (946)
Q Consensus 721 ~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (946)
...+++.||||||.+.+++.+|++++|||||+|+||++|++++++++.+.... .++
T Consensus 445 -~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~-------~~~---------------- 500 (646)
T KOG0039|consen 445 -YPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRT-------KAP---------------- 500 (646)
T ss_pred -ccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCC-------cCc----------------
Confidence 23589999999999999999999999999999999999999999998654211 000
Q ss_pred CccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccc
Q 002259 801 SPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIV 880 (946)
Q Consensus 801 ~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~ 880 (946)
.++......+++++|+|++|++.+++||.+++.++.+.+..+.+++|+|+|+.+++.|.++.++.+.|.+.+.+++.|++
T Consensus 501 ~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~ 580 (646)
T KOG0039|consen 501 TSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIV 580 (646)
T ss_pred cccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCcccc
Confidence 01223455689999999999999999999999999999887789999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEeecC
Q 002259 881 SGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHKEHF 946 (946)
Q Consensus 881 sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~E~F 946 (946)
+|+++++|+|||||++++++++..|++.+++||+||||+|++++++.|.+.+.++.+.|+||+|+|
T Consensus 581 ~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 581 TGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSSTATRFEFHKENF 646 (646)
T ss_pred ccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccccCceeeeeeccC
Confidence 999999999999999999999999988779999999999999999999999888889999999998
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=3.2e-56 Score=528.31 Aligned_cols=335 Identities=25% Similarity=0.450 Sum_probs=266.8
Q ss_pred eeecchhhhhhhhHHHHHHHhhhhh-hhhhhcccccCccccCcchhhHHHHHHHHHHHHHHHhhhhhhcccccccccCCc
Q 002259 419 LLTAKGAAETLKFNMALILLPVCRN-TITWLRSTRLGFFVPFDDNINFHKTIAAAIVVGVILHVGNHLACDFPRLISSSE 497 (946)
Q Consensus 419 ~~~ar~~a~~~~~n~~lill~~~Rn-~l~~Lr~~~~~~~ip~d~~~~fHk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~ 497 (946)
..++.|+|.+..+|+|+++||+.|| .+.|++| ++||+++.||||+|+++++++++|++++++. + ...
T Consensus 150 ~~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG------~s~e~~i~yHRWlGri~~~la~iH~i~y~i~-~---~~~-- 217 (699)
T PLN02631 150 RAFGLRIGYVGHICWAFLFFPVTRASTILPLVG------LTSESSIKYHIWLGHVSNFLFLVHTVVFLIY-W---AMI-- 217 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---Hhh--
Confidence 4678999999999999999999997 6899986 6799999999999999999999999999742 1 111
Q ss_pred hhhHHHhhhhhCCCCCchhhhcccchhhHHHHHHHHHHHHHHHhhHHHHhhccCCCCCccccccchhHHHHHHHHHHHHH
Q 002259 498 SDYHRYLSSSFGKHKPTYWDLVKGAEGITGILMVIFMAIAFILATRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIVYI 577 (946)
Q Consensus 498 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~~i 577 (946)
+.+.. .+. ..+.| ..+++|+++++++++|+++|+++|||+ .||+||++|++++++++
T Consensus 218 ~~~~~----~~~-w~~~~------~~~~~GviA~v~~~lm~~~Sl~~~RRr------------~YE~F~~~Hillaifiv 274 (699)
T PLN02631 218 NKLME----TFA-WNPTY------VPNLAGTIAMVIGIAMWVTSLPSFRRK------------KFELFFYTHHLYGLYIV 274 (699)
T ss_pred chhhh----hhh-ccccc------chHHHHHHHHHHHHHHHHhccHHHHhh------------hhhHHHHHHHHHHHHHH
Confidence 11111 110 01112 235789999999999999999999998 59999999999988666
Q ss_pred HHHHHhhhhhhhcccccceeeeh-hhhhhhhhhhcceeeeeeeeeeeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEE
Q 002259 578 LLIVHGILLFLVHKWYLKTTWMY-LAVPVLAYAGERTLRFFRSGFSTVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMF 656 (946)
Q Consensus 578 ll~~H~~~~~~~~~w~~~~~w~~-~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~ 656 (946)
++++|.. ..|.| +++++++|++||++|.+|... ..++++++.++++++++++++|.+++|+||||++
T Consensus 275 ~~~~H~g-----------~~w~~~~~~~ialw~~DR~lR~~r~~~-~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvf 342 (699)
T PLN02631 275 FYVIHVG-----------DSWFCMILPNIFLFFIDRYLRFLQSTK-RSRLVSARILPSDNLELTFSKTPGLHYTPTSILF 342 (699)
T ss_pred heEEecC-----------CchHHHHHHHHHHHHHHHHHHHHHHhc-eEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEE
Confidence 6678843 12333 345678999999999998754 4778888889999999999988889999999999
Q ss_pred EEcCCCCCCccccceeccCCC--CCeEEEEEEEcCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccC
Q 002259 657 VQCPAVSPFEWHPFSITSAPG--DDYLSVHIRQLGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYG 734 (946)
Q Consensus 657 l~~p~~s~~e~HPFTIas~p~--~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG 734 (946)
|++|..+.+|||||||+|.|+ ++.++++||..|+||++|++.++. .| ...++.||||||
T Consensus 343 L~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~------~g-------------~~i~V~VeGPYG 403 (699)
T PLN02631 343 LHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSS------SI-------------DSLEVSTEGPYG 403 (699)
T ss_pred EEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhc------CC-------------CeeEEEEECCCC
Confidence 999999889999999999984 578999999999999999887532 11 126899999999
Q ss_pred CCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEE
Q 002259 735 APAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAY 814 (946)
Q Consensus 735 ~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 814 (946)
.+..+...++++|+||||+||||++|++++++.+... ...+.++++
T Consensus 404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~----------------------------------~~~~~~~V~ 449 (699)
T PLN02631 404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQN----------------------------------PSTKLPDVL 449 (699)
T ss_pred CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccc----------------------------------cccCCCcEE
Confidence 8665667889999999999999999999999865211 111245899
Q ss_pred EEEEeCCCCchhhHHHHHHHHHh---HcCCCeEEEEEEEeccc
Q 002259 815 FYWVTREQGSFDWFKGVMNEVAE---LDQRGVIEMHNYLTSVY 854 (946)
Q Consensus 815 l~Wv~R~~~~~~wf~~~L~el~e---~~~~~~i~i~~yvT~~~ 854 (946)
|+|++|+.+++. |.+++..++. .-.+.++++++|+|+..
T Consensus 450 Li~~vR~~~dL~-f~deL~~l~~~~~~l~~~ni~i~iyVTR~~ 491 (699)
T PLN02631 450 LVCSFKHYHDLA-FLDLIFPLDISVSDISRLNLRIEAYITRED 491 (699)
T ss_pred EEEEECCHHHhh-hHHHHhhhccchhhhhcCceEEEEEEcCCC
Confidence 999999999985 6666665321 01134799999999863
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=4e-55 Score=521.62 Aligned_cols=437 Identities=24% Similarity=0.459 Sum_probs=325.8
Q ss_pred eeecchhhhhhhhHHHHHHHhhhhh-hhhhhcccccCccccCcchhhHHHHHHHHHHHHHHHhhhhhhcccccccccCCc
Q 002259 419 LLTAKGAAETLKFNMALILLPVCRN-TITWLRSTRLGFFVPFDDNINFHKTIAAAIVVGVILHVGNHLACDFPRLISSSE 497 (946)
Q Consensus 419 ~~~ar~~a~~~~~n~~lill~~~Rn-~l~~Lr~~~~~~~ip~d~~~~fHk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~ 497 (946)
..+|+|.|.+..+|+||+++|++|| .+.|+++ +|||+++.||||+|+++++++++|+++|+.. +...
T Consensus 153 ~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltG------is~e~~i~fHrWlGr~~~llallH~i~~~i~----w~~~-- 220 (722)
T PLN02844 153 LRVATRFGLLAEACLALLLLPVLRGLALFRLLG------IQFEASVRYHVWLGTSMIFFATVHGASTLFI----WGIS-- 220 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhh--
Confidence 4579999999999999999999998 5777765 7899999999999999999999999988731 1110
Q ss_pred hhhHHHhhhhhCCCCCchhhhcccchhhHHHHHHHHHHHHHHHhhHHHHhhccCCCCCccccccchhHHHHHHHHHHHHH
Q 002259 498 SDYHRYLSSSFGKHKPTYWDLVKGAEGITGILMVIFMAIAFILATRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIVYI 577 (946)
Q Consensus 498 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~~i 577 (946)
+...+.+.+ | -..+...++|+++++++++|+++|++++||+ .||+||++|++++++++
T Consensus 221 ~~~~~~~~~---------w-~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~------------~YElF~~~H~L~ivflv 278 (722)
T PLN02844 221 HHIQDEIWK---------W-QKTGRIYLAGEIALVTGLVIWITSLPQIRRK------------RFEIFYYTHHLYIVFLI 278 (722)
T ss_pred cchhhhhhh---------h-ccCcchhhhHHHHHHHHHHHHHHhhHHHHhh------------hhHHHHHHHHHHHHHHH
Confidence 000000100 1 0112234789999999999999999999998 59999999999887777
Q ss_pred HHHHHhhhhhhhcccccceeeehhhhhhhhhhhcceeeeeeeeeeeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEE
Q 002259 578 LLIVHGILLFLVHKWYLKTTWMYLAVPVLAYAGERTLRFFRSGFSTVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFV 657 (946)
Q Consensus 578 ll~~H~~~~~~~~~w~~~~~w~~~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l 657 (946)
++++|+.. ..|.|+++++++|++||++|.++.+. ...+++++.++++++++++++|..++|+||||++|
T Consensus 279 ~~~~H~~~----------~~~~~v~~~i~L~~~DRllR~~~s~~-~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L 347 (722)
T PLN02844 279 FFLFHAGD----------RHFYMVFPGIFLFGLDKLLRIVQSRP-ETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFM 347 (722)
T ss_pred hhhHhhcC----------cchhhhHHHHHHHHHHHHhheEEEee-eEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEE
Confidence 78899741 12235666788999999999988653 33456777889999999999988899999999999
Q ss_pred EcCCCCCCccccceeccCC--CCCeEEEEEEEcCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCC
Q 002259 658 QCPAVSPFEWHPFSITSAP--GDDYLSVHIRQLGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGA 735 (946)
Q Consensus 658 ~~p~~s~~e~HPFTIas~p--~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~ 735 (946)
++|..+.+|||||||+|+| +++.++++||..|+||++|.+.+....+ .|. + .....++.|+||||.
T Consensus 348 ~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~---~g~-~--------~~~~~~v~VeGPYG~ 415 (722)
T PLN02844 348 KIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELD---SET-N--------QMNCIPVAIEGPYGP 415 (722)
T ss_pred EECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhcc---CCC-C--------cccceEEEEECCccC
Confidence 9999988999999999987 4678999999999999999887653211 110 0 011258999999998
Q ss_pred CCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEE
Q 002259 736 PAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYF 815 (946)
Q Consensus 736 ~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 815 (946)
+..+...+++++|||||+||||++|+++++.++... .....++|+|
T Consensus 416 ~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~----------------------------------~~~~~~~V~L 461 (722)
T PLN02844 416 ASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSS----------------------------------RYRFPKRVQL 461 (722)
T ss_pred CCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhcccc----------------------------------ccCCCCcEEE
Confidence 765666789999999999999999999999864210 0112478999
Q ss_pred EEEeCCCCchhhHHHHHHHHHhH-cCCCeEEEEEEEecccCCCc---------------------hh-------HHH---
Q 002259 816 YWVTREQGSFDWFKGVMNEVAEL-DQRGVIEMHNYLTSVYEEGD---------------------AR-------SAL--- 863 (946)
Q Consensus 816 ~Wv~R~~~~~~wf~~~L~el~e~-~~~~~i~i~~yvT~~~~~~d---------------------~~-------~~~--- 863 (946)
+|++|+.+++.|+.++..++.+. .....+++++|+|+...++. .+ +.+
T Consensus 462 Iw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~ 541 (722)
T PLN02844 462 IYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMA 541 (722)
T ss_pred EEEECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHH
Confidence 99999999998888776555431 12236899999998643211 00 000
Q ss_pred --H-----------HHHH------hhhc--------------ccC-----------------------------------
Q 002259 864 --I-----------TMVQ------ALNH--------------AKN----------------------------------- 875 (946)
Q Consensus 864 --~-----------~~~~------~l~~--------------~~~----------------------------------- 875 (946)
+ ...+ ..++ ++.
T Consensus 542 ~~~~~s~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (722)
T PLN02844 542 AMVALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLK 621 (722)
T ss_pred HHHHHHHHHHHHHHHHHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccc
Confidence 0 0000 0000 000
Q ss_pred -CCcccc--------------C----CccccccC-CCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhc--
Q 002259 876 -GVDIVS--------------G----TRVRTHFA-RPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQ-- 933 (946)
Q Consensus 876 -~~d~~s--------------g----~~~~~~~g-RPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~-- 933 (946)
..+..+ + ....+|+| |||++++|+++.++..+.+|||.+|||++|..+|.+.|+..+.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~ 701 (722)
T PLN02844 622 KEIPRVSQKQGIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCF 701 (722)
T ss_pred cCCccccccccCCCCCccccccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhccccc
Confidence 000000 0 12347776 9999999999999998899999999999999999999999876
Q ss_pred ---C---CCccEEEEeecC
Q 002259 934 ---K---GSTKFEFHKEHF 946 (946)
Q Consensus 934 ---~---~~~~~~fh~E~F 946 (946)
. ..+.|.||.=+|
T Consensus 702 ~~~~~~~~~~~~~~hs~~f 720 (722)
T PLN02844 702 NVGDDGKRKMYFSFHSLNF 720 (722)
T ss_pred ccccccccCCceeeeeccc
Confidence 1 247899998776
No 4
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=1e-55 Score=525.27 Aligned_cols=339 Identities=22% Similarity=0.407 Sum_probs=268.9
Q ss_pred eeecchhhhhhhhHHHHHHHhhhhh-hhhhhcccccCccccCcchhhHHHHHHHHHHHHHHHhhhhhhcccccccccCCc
Q 002259 419 LLTAKGAAETLKFNMALILLPVCRN-TITWLRSTRLGFFVPFDDNINFHKTIAAAIVVGVILHVGNHLACDFPRLISSSE 497 (946)
Q Consensus 419 ~~~ar~~a~~~~~n~~lill~~~Rn-~l~~Lr~~~~~~~ip~d~~~~fHk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~ 497 (946)
..+|.|+|.+..+++|++++|++|| .+.|++| +|||+++.||||+|+++++++++|+++|++. +.. .
T Consensus 167 ~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG------~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~----~~~--~ 234 (702)
T PLN02292 167 DSIAVRLGLVGNICLAFLFYPVARGSSLLAAVG------LTSESSIKYHIWLGHLVMTLFTSHGLCYIIY----WIS--M 234 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh--c
Confidence 3579999999999999999999997 6899986 7899999999999999999999999999742 111 1
Q ss_pred hhhHHHhhhhhCCCCCchhhhcccchhhHHHHHHHHHHHHHHHhhHHHHhhccCCCCCccccccchhHHHHHHHHHHHHH
Q 002259 498 SDYHRYLSSSFGKHKPTYWDLVKGAEGITGILMVIFMAIAFILATRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIVYI 577 (946)
Q Consensus 498 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~~i 577 (946)
+.+.. + + .| ...+...++|+++++++++|+++|++++||+ +||+||++|++++++++
T Consensus 235 ~~~~~-~---~------~w-~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~------------~YE~F~~~HiL~~v~~v 291 (702)
T PLN02292 235 NQVSQ-M---L------EW-DRTGVSNLAGEIALVAGLVMWATTYPKIRRR------------FFEVFFYTHYLYIVFML 291 (702)
T ss_pred Cchhh-h---h------hc-cccchHHHHHHHHHHHHHHHHHHhhHHHHhc------------ccHhHHHHHHHHHHHHe
Confidence 11101 1 0 11 1123346899999999999999999999998 59999999999987777
Q ss_pred HHHHHhhhhhhhcccccceeeehhhhhhhhhhhcceeeeeeeeeeeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEE
Q 002259 578 LLIVHGILLFLVHKWYLKTTWMYLAVPVLAYAGERTLRFFRSGFSTVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFV 657 (946)
Q Consensus 578 ll~~H~~~~~~~~~w~~~~~w~~~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l 657 (946)
++++|.... .+.|+++++++|++||++|.+|.+ ..+++++++.++++++++++++|..++|+||||+||
T Consensus 292 ~~~~H~~~~----------~~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL 360 (702)
T PLN02292 292 FFVFHVGIS----------FALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFV 360 (702)
T ss_pred eeehhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEE
Confidence 778996421 112344567799999999999864 578899999999999999999988899999999999
Q ss_pred EcCCCCCCccccceeccCCC--CCeEEEEEEEcCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCC
Q 002259 658 QCPAVSPFEWHPFSITSAPG--DDYLSVHIRQLGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGA 735 (946)
Q Consensus 658 ~~p~~s~~e~HPFTIas~p~--~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~ 735 (946)
++|..+.+|+|||||+|+|+ +++++++||..|+||++|.+.++. |. .....+|.|+||||.
T Consensus 361 ~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~-------gd----------~i~~~~V~VeGPYG~ 423 (702)
T PLN02292 361 NIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS-------SD----------QIDRLAVSVEGPYGP 423 (702)
T ss_pred EEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC-------CC----------ccccceEEEECCccC
Confidence 99998889999999999873 578999999999999999887532 10 011358999999998
Q ss_pred CCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEE
Q 002259 736 PAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYF 815 (946)
Q Consensus 736 ~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 815 (946)
+..+...++++++||||+||||++|++++++++... ...+.++++|
T Consensus 424 ~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~----------------------------------~~~~~~~V~L 469 (702)
T PLN02292 424 ASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSST----------------------------------ETCKIPKITL 469 (702)
T ss_pred CccccccCCcEEEEEeccCHHHHHHHHHHHHhcccc----------------------------------ccCCCCcEEE
Confidence 765666789999999999999999999999865210 0112478999
Q ss_pred EEEeCCCCchhhHHHHHHHH---HhHcCCCeEEEEEEEeccc
Q 002259 816 YWVTREQGSFDWFKGVMNEV---AELDQRGVIEMHNYLTSVY 854 (946)
Q Consensus 816 ~Wv~R~~~~~~wf~~~L~el---~e~~~~~~i~i~~yvT~~~ 854 (946)
+|++|+.+++.|...+..|+ .+...+..+++++|+|+..
T Consensus 470 Iw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~ 511 (702)
T PLN02292 470 ICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREK 511 (702)
T ss_pred EEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCC
Confidence 99999999876544444433 2333345799999999853
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=339.04 Aligned_cols=383 Identities=22% Similarity=0.321 Sum_probs=254.7
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhhhcccccCccccCcchhhHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHh
Q 002259 425 AAETLKFNMALILLPVCRNTITWLRSTRLGFFVPFDDNINFHKTIAAAIVVGVILHVGNHLACDFPRLISSSESDYHRYL 504 (946)
Q Consensus 425 ~a~~~~~n~~lill~~~Rn~l~~Lr~~~~~~~ip~d~~~~fHk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~~~~~~~l 504 (946)
.|.+....|+++++++.| +.|+..| +-+.|+.+.+|||+|+.++++.+.|-+.....++ .....-.+
T Consensus 44 ~g~iaL~~msl~~~LA~R--~~~iE~~----~~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w---~~~~~l~~---- 110 (438)
T COG4097 44 LGFIALALMSLIFLLATR--LPLIEAW----FNGLDKIYRFHKYTSILAILLLLAHNFILFIGNW---LTLQLLNF---- 110 (438)
T ss_pred HHHHHHHHHHHHHHHHhc--hHHHhhh----hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcc---hhcccccc----
Confidence 344555678999999999 4456553 2368999999999999999999999998553221 10000000
Q ss_pred hhhhCCCCCc---hhhhcccchhhHHHHHHHHHHHHHHHhhHHHHhhccCCCCCccccccchhHHHHHHHHHHHHHHHHH
Q 002259 505 SSSFGKHKPT---YWDLVKGAEGITGILMVIFMAIAFILATRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIVYILLIV 581 (946)
Q Consensus 505 ~~~~~~~~~~---~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~~ill~~ 581 (946)
+-.. ..|. .|...+. .|-++.-+++.+++.+ .-|- + +.||.|.+.|.+++++|++..+
T Consensus 111 -k~a~-v~~~l~~~~~s~~e-lG~~~~yi~~~lllV~---~l~~--~-----------i~Ye~WR~~H~lm~vvYilg~~ 171 (438)
T COG4097 111 -KPAP-VKPSLAGMWRSAKE-LGEWSAYIFIGLLLVW---RLWL--N-----------IGYENWRIAHRLMAVVYILGLL 171 (438)
T ss_pred -cccc-cchhhhhhhHHHHH-HHHHHHHHHHHHHHHH---HHHH--h-----------cCchhHHHHHHHHHHHHHHHHH
Confidence 0000 0111 1111111 1223333333222211 1121 1 3699999999999999999999
Q ss_pred Hhhhhhhhccccccee-eeh---hhhhhhhhhhcceeeeeeeeeeeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEE
Q 002259 582 HGILLFLVHKWYLKTT-WMY---LAVPVLAYAGERTLRFFRSGFSTVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFV 657 (946)
Q Consensus 582 H~~~~~~~~~w~~~~~-w~~---~~~~~~l~~~dr~~R~~r~~~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l 657 (946)
|.....-...|..+.. |.- .++..+.+++....+..+++.+...++.++..+.++++++....+++.++|||+.||
T Consensus 172 H~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfL 251 (438)
T COG4097 172 HSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFL 251 (438)
T ss_pred HHHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEE
Confidence 9764322222322222 321 122222223333344556777788888888888899999888877888999999999
Q ss_pred EcCCCC-CCccccceeccCCCCCeEEEEEEEcCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCC
Q 002259 658 QCPAVS-PFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAP 736 (946)
Q Consensus 658 ~~p~~s-~~e~HPFTIas~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~ 736 (946)
.|+... ....|||||+++.+...+.|.||+.||+|+.|++-++ +| .++.||||||.+
T Consensus 252 k~~~~~~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnLk-------~G---------------~k~~vdGPYG~F 309 (438)
T COG4097 252 KIEIEEFRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNLK-------VG---------------TKLEVDGPYGKF 309 (438)
T ss_pred EeccccccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhcc-------CC---------------ceEEEecCccee
Confidence 998754 3578999999998878999999999999999988542 44 789999999998
Q ss_pred CCCCCCCC-EEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEE
Q 002259 737 AQDYRNYD-VLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYF 815 (946)
Q Consensus 737 ~~~~~~~~-~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 815 (946)
. ++.+. +-|+|||||||||++|+++.+..+. ..+.|+|
T Consensus 310 ~--~~~g~~~QVWIAGGIGITPFis~l~~l~~~~---------------------------------------s~~~V~L 348 (438)
T COG4097 310 D--FERGLNTQVWIAGGIGITPFISMLFTLAERK---------------------------------------SDPPVHL 348 (438)
T ss_pred e--cccCCcccEEEecCcCcchHHHHHHhhcccc---------------------------------------cCCceEE
Confidence 4 44444 3899999999999999999887631 1477999
Q ss_pred EEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHH
Q 002259 816 YWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWK 895 (946)
Q Consensus 816 ~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~ 895 (946)
++++|+.++. -+.++|+++++... ++++|+-=++. |. --|.+
T Consensus 349 ~Y~~~n~e~~-~y~~eLr~~~qkl~--~~~lHiiDSs~----~g-------------------------------~l~~e 390 (438)
T COG4097 349 FYCSRNWEEA-LYAEELRALAQKLP--NVVLHIIDSSK----DG-------------------------------YLDQE 390 (438)
T ss_pred EEEecCCchh-HHHHHHHHHHhcCC--CeEEEEecCCC----CC-------------------------------ccCHH
Confidence 9999999985 67788888887543 47777611110 10 11111
Q ss_pred HHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEeecC
Q 002259 896 KVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHKEHF 946 (946)
Q Consensus 896 ~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~E~F 946 (946)
++-+. .++ +..-.||+|||++|++.+++..++.+-+- + +||.|.|
T Consensus 391 ~ler~--~~~-~~~~sv~fCGP~~m~dsL~r~l~~~~~~i--~-~~h~E~F 435 (438)
T COG4097 391 DLERY--PDR-PRTRSVFFCGPIKMMDSLRRDLKKQNVPI--T-NFHYEHF 435 (438)
T ss_pred Hhhcc--ccc-cCcceEEEEcCHHHHHHHHHHHHHcCCCH--H-HHHHHhc
Confidence 11111 001 12247999999999999999999865432 1 8999987
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.98 E-value=2.7e-31 Score=279.37 Aligned_cols=205 Identities=35% Similarity=0.648 Sum_probs=165.9
Q ss_pred EEEEEec-CCEEEEEEECCCCCccCCCcEEEEEcCCC-CCCccccceeccCCCC--CeEEEEEEEcCCchHHHHHHHhhc
Q 002259 627 LKVAIYP-GNVLTLQMSRPPQFRYKSGQYMFVQCPAV-SPFEWHPFSITSAPGD--DYLSVHIRQLGDWTQELKRVFSEA 702 (946)
Q Consensus 627 ~~v~~~~-~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~-s~~e~HPFTIas~p~~--~~l~l~Ir~~G~~T~~L~~~~~~~ 702 (946)
++++.++ +++++|+++.|..+.|+||||++|++|.. +.+++|||||+|.|.+ +.++|+||..+|+|+++.+.+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4567788 99999999998888999999999999988 7789999999999975 899999999955566565544321
Q ss_pred CCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccccccc
Q 002259 703 CEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDF 782 (946)
Q Consensus 703 ~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~ 782 (946)
. .+ ....++.|+||||.+..+...++++||||||+||||++|++++++.+...
T Consensus 82 ~-~~---------------~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~----------- 134 (210)
T cd06186 82 P-GG---------------GVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK----------- 134 (210)
T ss_pred c-CC---------------CceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc-----------
Confidence 0 00 11378999999999864566889999999999999999999999875321
Q ss_pred ccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHH
Q 002259 783 SRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSA 862 (946)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~ 862 (946)
....++|+|+|++|+.+++.||.++|.+..+..... .+++|+|+
T Consensus 135 ------------------------~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~~--~~~i~~T~---------- 178 (210)
T cd06186 135 ------------------------TSRTRRVKLVWVVRDREDLEWFLDELRAAQELEVDG--EIEIYVTR---------- 178 (210)
T ss_pred ------------------------cCCccEEEEEEEECCHHHhHHHHHHHHhhhhccCCc--eEEEEEee----------
Confidence 112578999999999999999999987622222221 67888871
Q ss_pred HHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEE
Q 002259 863 LITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFH 942 (946)
Q Consensus 863 ~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh 942 (946)
|++|||++|++++++.+.+ ++...+.||
T Consensus 179 -------------------------------------------------v~~CGp~~~~~~~~~~~~~---~~~~~~~~~ 206 (210)
T cd06186 179 -------------------------------------------------VVVCGPPGLVDDVRNAVAK---KGGTGVEFH 206 (210)
T ss_pred -------------------------------------------------EEEECchhhccHHHHHHhh---cCCCceEEE
Confidence 9999999999999999988 556899999
Q ss_pred eecC
Q 002259 943 KEHF 946 (946)
Q Consensus 943 ~E~F 946 (946)
+|.|
T Consensus 207 ~e~f 210 (210)
T cd06186 207 EESF 210 (210)
T ss_pred eecC
Confidence 9998
No 7
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.94 E-value=2.1e-25 Score=240.62 Aligned_cols=230 Identities=18% Similarity=0.264 Sum_probs=174.4
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCC---CccCCCcEEEEEcCCCC--CCccccceeccCCCCCeEEEEEEEc--CCchHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQ---FRYKSGQYMFVQCPAVS--PFEWHPFSITSAPGDDYLSVHIRQL--GDWTQE 694 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~s--~~e~HPFTIas~p~~~~l~l~Ir~~--G~~T~~ 694 (946)
..++|++++.+++++.+|++..+.. +.|+||||+.|.++..+ ...+|||||+|.|.++.+.|+||.. |..|+.
T Consensus 7 ~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~~ 86 (247)
T cd06184 7 RPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSNY 86 (247)
T ss_pred EEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchHH
Confidence 4567788899999999999998753 68999999999997543 4578999999999877999999998 889998
Q ss_pred HHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhh
Q 002259 695 LKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEE 774 (946)
Q Consensus 695 L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~ 774 (946)
|.+.+ .+| ..+.|.||||.+..+...++++||||||+||||+++++++++++.
T Consensus 87 l~~~~-------~~G---------------d~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~----- 139 (247)
T cd06184 87 LHDNV-------KVG---------------DVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG----- 139 (247)
T ss_pred HHhcC-------CCC---------------CEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC-----
Confidence 87622 133 789999999997644336789999999999999999999987641
Q ss_pred hcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEeccc
Q 002259 775 QADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVY 854 (946)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~ 854 (946)
..++++|+|++|+.+++ +|.+.|+++++.. ..+.++.++++..
T Consensus 140 ----------------------------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~ 182 (247)
T cd06184 140 ----------------------------------PGRPVTFIHAARNSAVH-AFRDELEELAARL--PNLKLHVFYSEPE 182 (247)
T ss_pred ----------------------------------CCCcEEEEEEcCchhhH-HHHHHHHHHHhhC--CCeEEEEEECCCC
Confidence 13679999999999986 7888888887643 3578888877542
Q ss_pred CCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcC
Q 002259 855 EEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQK 934 (946)
Q Consensus 855 ~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~ 934 (946)
+.... +...+.||++...+.+ .. +..+..||+|||++|++++++.+.+.
T Consensus 183 ~~~~~------------------------~~~~~~g~~~~~~l~~-~~---~~~~~~v~icGp~~m~~~v~~~l~~~--- 231 (247)
T cd06184 183 AGDRE------------------------EDYDHAGRIDLALLRE-LL---LPADADFYLCGPVPFMQAVREGLKAL--- 231 (247)
T ss_pred ccccc------------------------ccccccCccCHHHHhh-cc---CCCCCEEEEECCHHHHHHHHHHHHHc---
Confidence 21100 0012336776543322 11 22446899999999999999999874
Q ss_pred CCccEEEEeecC
Q 002259 935 GSTKFEFHKEHF 946 (946)
Q Consensus 935 ~~~~~~fh~E~F 946 (946)
|.+.-.+|.|.|
T Consensus 232 G~~~~~i~~e~f 243 (247)
T cd06184 232 GVPAERIHYEVF 243 (247)
T ss_pred CCCHHHeeeecc
Confidence 445557888877
No 8
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.94 E-value=1.4e-25 Score=241.39 Aligned_cols=232 Identities=20% Similarity=0.269 Sum_probs=175.8
Q ss_pred cceeeeee----eeeeeEEEEEEEEecCCEEEEEEECCCC-CccCCCcEEEEEcCCCCCCccccceeccCCC--CCeEEE
Q 002259 611 ERTLRFFR----SGFSTVRLLKVAIYPGNVLTLQMSRPPQ-FRYKSGQYMFVQCPAVSPFEWHPFSITSAPG--DDYLSV 683 (946)
Q Consensus 611 dr~~R~~r----~~~~~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~--~~~l~l 683 (946)
|+++|.++ .....++|++++.+++++.++++..+.. ..|+||||+.|.++..+...+|||||+|.|. ++.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~ 82 (243)
T cd06216 3 DFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITL 82 (243)
T ss_pred hhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEE
Confidence 55555533 3445778899999999999999998765 4799999999999765556789999999986 788999
Q ss_pred EEEEc--CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHH
Q 002259 684 HIRQL--GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISI 761 (946)
Q Consensus 684 ~Ir~~--G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsi 761 (946)
+||.. |.+|..|.+.+ .+| ..+.|.||||.+..+...++++|+||||+||||++|+
T Consensus 83 ~ik~~~~G~~s~~l~~~~-------~~G---------------d~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~ 140 (243)
T cd06216 83 TVKAQPDGLVSNWLVNHL-------APG---------------DVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSM 140 (243)
T ss_pred EEEEcCCCcchhHHHhcC-------CCC---------------CEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHH
Confidence 99998 88999887532 123 6899999999975443447899999999999999999
Q ss_pred HHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCC
Q 002259 762 LKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQR 841 (946)
Q Consensus 762 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~ 841 (946)
++++.... ..++++++|++|+.+++ ++.+.|+++++..
T Consensus 141 l~~~~~~~---------------------------------------~~~~i~l~~~~r~~~~~-~~~~el~~l~~~~-- 178 (243)
T cd06216 141 LRTLLARG---------------------------------------PTADVVLLYYARTREDV-IFADELRALAAQH-- 178 (243)
T ss_pred HHHHHhcC---------------------------------------CCCCEEEEEEcCChhhh-HHHHHHHHHHHhC--
Confidence 99986531 14679999999999886 8888888887543
Q ss_pred CeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHH
Q 002259 842 GVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLA 921 (946)
Q Consensus 842 ~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~ 921 (946)
..++++.++|+. . ..||.+. +.+++.... .....||+|||++|+
T Consensus 179 ~~~~~~~~~s~~-----~----------------------------~~g~~~~-~~l~~~~~~--~~~~~vyvcGp~~m~ 222 (243)
T cd06216 179 PNLRLHLLYTRE-----E----------------------------LDGRLSA-AHLDAVVPD--LADRQVYACGPPGFL 222 (243)
T ss_pred CCeEEEEEEcCC-----c----------------------------cCCCCCH-HHHHHhccC--cccCeEEEECCHHHH
Confidence 247777777632 0 0134442 233333221 123589999999999
Q ss_pred HHHHHHHHhhhcCCCccEEEEeecC
Q 002259 922 KELSKLCYEFNQKGSTKFEFHKEHF 946 (946)
Q Consensus 922 ~~vr~~~~~~~~~~~~~~~fh~E~F 946 (946)
+++++.+++ .|.+ -.+|.|.|
T Consensus 223 ~~~~~~l~~---~Gv~-~~i~~e~F 243 (243)
T cd06216 223 DAAEELLEA---AGLA-DRLHTERF 243 (243)
T ss_pred HHHHHHHHH---CCCc-cceeeccC
Confidence 999999987 4555 67899987
No 9
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.94 E-value=1.3e-25 Score=241.33 Aligned_cols=228 Identities=20% Similarity=0.276 Sum_probs=168.7
Q ss_pred EEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCC-CCCccccceeccCCCCCeEEEEEEEc--CCchHHHHHHHhhc
Q 002259 626 LLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAV-SPFEWHPFSITSAPGDDYLSVHIRQL--GDWTQELKRVFSEA 702 (946)
Q Consensus 626 i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~-s~~e~HPFTIas~p~~~~l~l~Ir~~--G~~T~~L~~~~~~~ 702 (946)
|++++.+++++++++++.|..+.|+||||+.|++|.. +...+|||||+|.|.++.++|+||.. |.+|+.|.++
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~l---- 77 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKL---- 77 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhcC----
Confidence 5677888999999999988778899999999999876 56688999999999888999999976 8899988643
Q ss_pred CCCCCCCCCCcccccccccCCCCEEEEe-CccCCCCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccccc
Q 002259 703 CEPPVAGKSGLLRADETTKKSLPKLLID-GPYGAPAQDYR-NYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVS 780 (946)
Q Consensus 703 ~~~~~~G~~~~~~~~~~~~~~~~~v~id-GPyG~~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 780 (946)
..| ..+.+. ||||.+..+.. ..+++||||||+||||++++++++....
T Consensus 78 ----~~G---------------d~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~----------- 127 (241)
T cd06195 78 ----KPG---------------DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE----------- 127 (241)
T ss_pred ----CCC---------------CEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC-----------
Confidence 133 789999 99999754333 4689999999999999999999987431
Q ss_pred ccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchh
Q 002259 781 DFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDAR 860 (946)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~ 860 (946)
..++++|+|++|+.+++ +|.++|+++++... ..++++.++|+..+..
T Consensus 128 ----------------------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~s~~~~~~--- 174 (241)
T cd06195 128 ----------------------------RFDKIVLVHGVRYAEEL-AYQDEIEALAKQYN-GKFRYVPIVSREKENG--- 174 (241)
T ss_pred ----------------------------CCCcEEEEEccCCHHHh-hhHHHHHHHHhhcC-CCEEEEEEECcCCccC---
Confidence 14689999999999997 78888888876421 3577777777432110
Q ss_pred HHHHHHHHhhhcccCCCccccCCccccccCCCCHH---HHHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHHhhhcCC-
Q 002259 861 SALITMVQALNHAKNGVDIVSGTRVRTHFARPNWK---KVLSKLSSKH-CNARIGVFYCGAPVLAKELSKLCYEFNQKG- 935 (946)
Q Consensus 861 ~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~---~v~~~~~~~~-~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~- 935 (946)
+ ..||.+-. +.+.+..... ......||+|||++|++.+++.+.+.+...
T Consensus 175 ---------------------~-----~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~ 228 (241)
T cd06195 175 ---------------------A-----LTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGFSKN 228 (241)
T ss_pred ---------------------C-----CceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 0 01222110 1122211111 123467999999999999999998854321
Q ss_pred --CccEEEEeecC
Q 002259 936 --STKFEFHKEHF 946 (946)
Q Consensus 936 --~~~~~fh~E~F 946 (946)
...-.+|.|.|
T Consensus 229 ~~~~~~~~~~E~~ 241 (241)
T cd06195 229 HRRKPGNITVEKY 241 (241)
T ss_pred ccCCCceEEEecC
Confidence 12278999988
No 10
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.94 E-value=2.1e-25 Score=237.14 Aligned_cols=220 Identities=22% Similarity=0.362 Sum_probs=164.9
Q ss_pred EEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEc--CCchHHHHHHHhh
Q 002259 625 RLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQL--GDWTQELKRVFSE 701 (946)
Q Consensus 625 ~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~--G~~T~~L~~~~~~ 701 (946)
+|++++.++++++++++..|..++|+||||+.|.+|.. .+|||||+|.|. ++.++|+||.. |.+|++|.+.+.
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~- 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK- 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhcc-
Confidence 56788889999999999988788999999999999864 589999999986 68999999998 779998876321
Q ss_pred cCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccc
Q 002259 702 ACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSD 781 (946)
Q Consensus 702 ~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~ 781 (946)
+| ..+.|.||||.+......++++||||||+||||+++++++++.+.
T Consensus 78 ------~G---------------~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------------ 124 (224)
T cd06189 78 ------EN---------------GLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------------ 124 (224)
T ss_pred ------CC---------------CEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------------
Confidence 33 689999999998644445789999999999999999999987541
Q ss_pred cccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhH
Q 002259 782 FSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARS 861 (946)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~ 861 (946)
..++++|+|.+|+.+++ ++.++|+++++.. .++.++.++++..+..
T Consensus 125 ---------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~~---- 170 (224)
T cd06189 125 ---------------------------SKRPIHLYWGARTEEDL-YLDELLEAWAEAH--PNFTYVPVLSEPEEGW---- 170 (224)
T ss_pred ---------------------------CCCCEEEEEecCChhhc-cCHHHHHHHHHhC--CCeEEEEEeCCCCcCC----
Confidence 13679999999999987 6678888887643 2466666666431110
Q ss_pred HHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEE
Q 002259 862 ALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEF 941 (946)
Q Consensus 862 ~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~f 941 (946)
.| ..|+.. +.+++... ......||+|||+.|++++++.+.+. |...-.+
T Consensus 171 -------------------~g-----~~g~v~-~~l~~~~~---~~~~~~v~vCGp~~m~~~~~~~l~~~---G~~~~~i 219 (224)
T cd06189 171 -------------------QG-----RTGLVH-EAVLEDFP---DLSDFDVYACGSPEMVYAARDDFVEK---GLPEENF 219 (224)
T ss_pred -------------------cc-----ccccHH-HHHHhhcc---CccccEEEEECCHHHHHHHHHHHHHc---CCCHHHc
Confidence 00 001110 11111111 11335699999999999999999874 4556678
Q ss_pred EeecC
Q 002259 942 HKEHF 946 (946)
Q Consensus 942 h~E~F 946 (946)
|.|.|
T Consensus 220 ~~e~f 224 (224)
T cd06189 220 FSDAF 224 (224)
T ss_pred ccCCC
Confidence 88887
No 11
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.94 E-value=2.4e-25 Score=235.83 Aligned_cols=191 Identities=20% Similarity=0.333 Sum_probs=146.0
Q ss_pred EEEecCCEEEEEEECCCC---CccCCCcEEEEEcCCCC----------------CCccccceeccCCCC----CeEEEEE
Q 002259 629 VAIYPGNVLTLQMSRPPQ---FRYKSGQYMFVQCPAVS----------------PFEWHPFSITSAPGD----DYLSVHI 685 (946)
Q Consensus 629 v~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~s----------------~~e~HPFTIas~p~~----~~l~l~I 685 (946)
.+.+++++.++++..|.+ +.|+|||||.|.+|... ...+|||||+|.|++ +.++|+|
T Consensus 3 ~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 3 SEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred ceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 456789999999998876 89999999999998531 124688999999964 6899999
Q ss_pred EEcCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCC---CCCCEEEEEEcCCCHHHHHHHH
Q 002259 686 RQLGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDY---RNYDVLLLVGLGIGATPFISIL 762 (946)
Q Consensus 686 r~~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~---~~~~~vvlIagGiGITP~lsil 762 (946)
|..|++|+.|.+...... ..| ..+.|+||||.+..+. ..++++|||||||||||+++++
T Consensus 83 k~~G~~T~~L~~~~~~~~---~~G---------------~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil 144 (220)
T cd06197 83 RKKGPVTGFLFQVARRLR---EQG---------------LEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAML 144 (220)
T ss_pred EeCCCCCHHHHHhhhccc---CCC---------------ceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHH
Confidence 999999999988753210 012 6899999999976432 3578999999999999999999
Q ss_pred HHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCC
Q 002259 763 KDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRG 842 (946)
Q Consensus 763 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~ 842 (946)
++++.... ..++|+|+|++|+.+++ +|.++|.++...
T Consensus 145 ~~l~~~~~--------------------------------------~~~~v~l~~~~r~~~~~-~~~~el~~~~~~---- 181 (220)
T cd06197 145 RAILSSRN--------------------------------------TTWDITLLWSLREDDLP-LVMDTLVRFPGL---- 181 (220)
T ss_pred HHHHhccc--------------------------------------CCCcEEEEEEecchhhH-HHHHHHHhccCC----
Confidence 99875310 14689999999999976 666666443321
Q ss_pred eEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHH
Q 002259 843 VIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAK 922 (946)
Q Consensus 843 ~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~ 922 (946)
.+.++.+.| + .||+|||++|++
T Consensus 182 ~~~~~~~~~--------------------------------------~--------------------~v~~CGP~~m~~ 203 (220)
T cd06197 182 PVSTTLFIT--------------------------------------S--------------------EVYLCGPPALEK 203 (220)
T ss_pred ceEEEEEEe--------------------------------------c--------------------cEEEECcHHHHH
Confidence 122222211 0 599999999999
Q ss_pred HHHHHHHhhhcCCCccEEEEeecC
Q 002259 923 ELSKLCYEFNQKGSTKFEFHKEHF 946 (946)
Q Consensus 923 ~vr~~~~~~~~~~~~~~~fh~E~F 946 (946)
.+.+.+++. .+|.|.|
T Consensus 204 ~~~~~~~~~--------~~~~e~f 219 (220)
T cd06197 204 AVLEWLEGK--------KVHRESF 219 (220)
T ss_pred HHHHHhhhc--------eeEeccc
Confidence 999998873 7899988
No 12
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.94 E-value=3.2e-25 Score=234.31 Aligned_cols=207 Identities=26% Similarity=0.427 Sum_probs=153.6
Q ss_pred CCEEEEEEECCCC-CccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEcCCchHHHHHHHhhcCCCCCCCCC
Q 002259 634 GNVLTLQMSRPPQ-FRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQLGDWTQELKRVFSEACEPPVAGKS 711 (946)
Q Consensus 634 ~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~G~~T~~L~~~~~~~~~~~~~G~~ 711 (946)
.++.+|++..+.. +.|+|||||.|++|..+.+++|||||+|.|.+ +.++|+||..|++|+.|.+.+. .|
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~-------~G-- 77 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLK-------PG-- 77 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCC-------CC--
Confidence 4677888876655 78999999999998766678999999999875 5999999999999999874321 23
Q ss_pred CcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCC
Q 002259 712 GLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVG 791 (946)
Q Consensus 712 ~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (946)
..+.|.||||.+..+. .++++||||||+||||++|+++++..+.
T Consensus 78 -------------~~v~i~gP~G~~~~~~-~~~~~vlia~GtGiap~~~~l~~~~~~~---------------------- 121 (216)
T cd06198 78 -------------TRVTVEGPYGRFTFDD-RRARQIWIAGGIGITPFLALLEALAARG---------------------- 121 (216)
T ss_pred -------------CEEEEECCCCCCcccc-cCceEEEEccccCHHHHHHHHHHHHhcC----------------------
Confidence 6899999999976433 3789999999999999999999887541
Q ss_pred CCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhh
Q 002259 792 SNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALN 871 (946)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~ 871 (946)
..++++++|++|+.+++ +|.+.|+++.+.. .+.++...+...
T Consensus 122 -----------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~~~~----------------- 163 (216)
T cd06198 122 -----------------DARPVTLFYCVRDPEDA-VFLDELRALAAAA---GVVLHVIDSPSD----------------- 163 (216)
T ss_pred -----------------CCceEEEEEEECCHHHh-hhHHHHHHHHHhc---CeEEEEEeCCCC-----------------
Confidence 13689999999999986 7788888876543 355554333210
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEeecC
Q 002259 872 HAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHKEHF 946 (946)
Q Consensus 872 ~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~E~F 946 (946)
++.+...++.... .+.....||+|||+.|++++++.+.+. |.+.-.+|.|.|
T Consensus 164 ------------------~~~~~~~~~~~~~--~~~~~~~vyicGp~~m~~~v~~~l~~~---Gv~~~~I~~E~f 215 (216)
T cd06198 164 ------------------GRLTLEQLVRALV--PDLADADVWFCGPPGMADALEKGLRAL---GVPARRFHYERF 215 (216)
T ss_pred ------------------cccchhhhhhhcC--CCcCCCeEEEECcHHHHHHHHHHHHHc---CCChHhcchhhc
Confidence 0111111111111 112346799999999999999999874 555667888887
No 13
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.93 E-value=7.2e-25 Score=234.82 Aligned_cols=224 Identities=18% Similarity=0.295 Sum_probs=165.3
Q ss_pred eEEEEEEEEecCCEEEEEEECCCC------CccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEc--CCchH
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPPQ------FRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQL--GDWTQ 693 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~~------~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~--G~~T~ 693 (946)
.++|++++.+++++++++++.|.. +.|+||||+.|.+|.. .++|||||+|.|. ++.++|+||.. |.+|.
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~ 80 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFST 80 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCCCCEEEEEEEEcCCCccch
Confidence 567888999999999999998764 6899999999999853 3689999999986 67899999986 77888
Q ss_pred HHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhh
Q 002259 694 ELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQE 773 (946)
Q Consensus 694 ~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~ 773 (946)
.|.+.+ .+| ..+.|.||||.+..+...++++||||||+||||++++++++....
T Consensus 81 ~l~~~~-------~~G---------------d~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~---- 134 (236)
T cd06210 81 YLETRA-------KVG---------------QRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG---- 134 (236)
T ss_pred hhhhCc-------CCC---------------CEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC----
Confidence 886522 133 789999999997543345678999999999999999999987531
Q ss_pred hhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecc
Q 002259 774 EQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSV 853 (946)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~ 853 (946)
..++++|+|.+|+.+++ ++.+.|.++++... .++++.++++.
T Consensus 135 -----------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~--~~~~~~~~s~~ 176 (236)
T cd06210 135 -----------------------------------EPQEARLFFGVNTEAEL-FYLDELKRLADSLP--NLTVRICVWRP 176 (236)
T ss_pred -----------------------------------CCceEEEEEecCCHHHh-hhHHHHHHHHHhCC--CeEEEEEEcCC
Confidence 13579999999999986 77888888876543 47777766642
Q ss_pred cCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhc
Q 002259 854 YEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQ 933 (946)
Q Consensus 854 ~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~ 933 (946)
.+.. .+. .|+ ..+.+.+..... .....||+|||+.|++.+++.+++.
T Consensus 177 ~~~~-----------------------~~~-----~g~--~~~~l~~~l~~~-~~~~~vyicGp~~m~~~~~~~l~~~-- 223 (236)
T cd06210 177 GGEW-----------------------EGY-----RGT--VVDALREDLASS-DAKPDIYLCGPPGMVDAAFAAAREA-- 223 (236)
T ss_pred CCCc-----------------------CCc-----cCc--HHHHHHHhhccc-CCCcEEEEeCCHHHHHHHHHHHHHc--
Confidence 1100 000 012 122333222111 1235699999999999999999874
Q ss_pred CCCccEEEEeecC
Q 002259 934 KGSTKFEFHKEHF 946 (946)
Q Consensus 934 ~~~~~~~fh~E~F 946 (946)
|...-.+|.|.|
T Consensus 224 -G~~~~~i~~E~f 235 (236)
T cd06210 224 -GVPDEQVYLEKF 235 (236)
T ss_pred -CCCHHHeeeccc
Confidence 444556888887
No 14
>PRK08051 fre FMN reductase; Validated
Probab=99.93 E-value=4.2e-25 Score=236.09 Aligned_cols=223 Identities=19% Similarity=0.278 Sum_probs=162.2
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCC-CCCeEEEEEEEcCC--chHHHHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAP-GDDYLSVHIRQLGD--WTQELKRV 698 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p-~~~~l~l~Ir~~G~--~T~~L~~~ 698 (946)
..++|.+++.+++++..|++..+..+.|+||||++|+++.. +.|||||+|.| +++.++|+||..++ .+..+.+.
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 45778899999999999999887788999999999999753 67999999998 47889999999754 55555332
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccc
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADS 778 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~ 778 (946)
+ .+| ..|.|+||||.+.......+++||||||+||||+++++++++...
T Consensus 80 l-------~~G---------------~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~--------- 128 (232)
T PRK08051 80 I-------LKD---------------GEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG--------- 128 (232)
T ss_pred c-------CCC---------------CEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC---------
Confidence 2 133 789999999998654345678999999999999999999987641
Q ss_pred ccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCc
Q 002259 779 VSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGD 858 (946)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d 858 (946)
..++++|+|++|+.+++ +|.++|.++++... .+.++..+++.. +
T Consensus 129 ------------------------------~~~~v~l~~g~r~~~~~-~~~~el~~l~~~~~--~~~~~~~~~~~~---~ 172 (232)
T PRK08051 129 ------------------------------PNRPITLYWGGREEDHL-YDLDELEALALKHP--NLHFVPVVEQPE---E 172 (232)
T ss_pred ------------------------------CCCcEEEEEEeccHHHh-hhhHHHHHHHHHCC--CcEEEEEeCCCC---C
Confidence 13679999999999997 88888888876542 355555444211 1
Q ss_pred hhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHH-HhhhcCCCc
Q 002259 859 ARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLC-YEFNQKGST 937 (946)
Q Consensus 859 ~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~-~~~~~~~~~ 937 (946)
. ..|. .|+.. +.++..... ..+..||+|||++|++.+++.+ .+. |..
T Consensus 173 ~--------------------~~~~-----~g~v~-~~l~~~~~~---~~~~~vyicGp~~m~~~v~~~l~~~~---G~~ 220 (232)
T PRK08051 173 G--------------------WQGK-----TGTVL-TAVMQDFGS---LAEYDIYIAGRFEMAKIARELFCRER---GAR 220 (232)
T ss_pred C--------------------cccc-----eeeeh-HHHHhhccC---cccCEEEEECCHHHHHHHHHHHHHHc---CCC
Confidence 0 0010 12211 122222111 1234699999999999999998 773 445
Q ss_pred cEEEEeecC
Q 002259 938 KFEFHKEHF 946 (946)
Q Consensus 938 ~~~fh~E~F 946 (946)
.-.+|.|.|
T Consensus 221 ~~~i~~e~f 229 (232)
T PRK08051 221 EEHLFGDAF 229 (232)
T ss_pred HHHeecccc
Confidence 556788877
No 15
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=7.7e-25 Score=233.38 Aligned_cols=221 Identities=21% Similarity=0.304 Sum_probs=167.1
Q ss_pred eEEEEEEEEecCCEEEEEEECCC--CCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEc--CCchHHHHHH
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPP--QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQL--GDWTQELKRV 698 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~--G~~T~~L~~~ 698 (946)
.++|++++.+++++++|+++.|. .+.|+||||+.|++|+.. ++|||||+|.|.++.++|+||.. |..|..|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 56788999999999999999876 678999999999998643 57999999999878999999986 7789888763
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccc
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADS 778 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~ 778 (946)
+ .+| ..+.|.||||.+... ...++++|||||+||||++|++++++.+.
T Consensus 81 l-------~~G---------------~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~--------- 128 (228)
T cd06209 81 A-------QPG---------------DRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG--------- 128 (228)
T ss_pred c-------CCC---------------CEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC---------
Confidence 2 133 689999999997643 33478999999999999999999987541
Q ss_pred ccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCc
Q 002259 779 VSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGD 858 (946)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d 858 (946)
..++++|+|.+|+.+++ .+.+.++++++... .+++++++++... .+
T Consensus 129 ------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~--~~~~~~~~s~~~~-~~ 174 (228)
T cd06209 129 ------------------------------SAHPVHLVYGVTRDADL-VELDRLEALAERLP--GFSFRTVVADPDS-WH 174 (228)
T ss_pred ------------------------------CCCcEEEEEecCCHHHh-ccHHHHHHHHHhCC--CeEEEEEEcCCCc-cC
Confidence 13689999999999886 56778888776543 4778887774321 00
Q ss_pred hhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCcc
Q 002259 859 ARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTK 938 (946)
Q Consensus 859 ~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~ 938 (946)
+. .|+ +.+.+.+... ...+..||+|||+.|++++++.+.+ .|.+.
T Consensus 175 -----------------------~~-----~g~--v~~~~~~~~~--~~~~~~v~icGp~~m~~~~~~~l~~---~G~~~ 219 (228)
T cd06209 175 -----------------------PR-----KGY--VTDHLEAEDL--NDGDVDVYLCGPPPMVDAVRSWLDE---QGIEP 219 (228)
T ss_pred -----------------------CC-----cCC--ccHHHHHhhc--cCCCcEEEEeCCHHHHHHHHHHHHH---cCCCH
Confidence 00 011 1223322211 1234579999999999999999987 45566
Q ss_pred EEEEeecC
Q 002259 939 FEFHKEHF 946 (946)
Q Consensus 939 ~~fh~E~F 946 (946)
-.+|.|.|
T Consensus 220 ~~i~~E~F 227 (228)
T cd06209 220 ANFYYEKF 227 (228)
T ss_pred HHEeeecc
Confidence 67888887
No 16
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.93 E-value=9.3e-25 Score=233.41 Aligned_cols=225 Identities=19% Similarity=0.341 Sum_probs=165.7
Q ss_pred eEEEEEEEEecCCEEEEEEECCC--CCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHHHH
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPP--QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQELKR 697 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L~~ 697 (946)
+++|++++.+++++.++++..+. .+.|+||||+.|++|+.. ++|||||+|.|.+ +.++|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 46788999999999999998654 578999999999998643 7899999999875 8899999997 678888865
Q ss_pred HHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcc
Q 002259 698 VFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQAD 777 (946)
Q Consensus 698 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~ 777 (946)
.+ .+| ..+.|.||||.+......++++||||||+||||++++++++....
T Consensus 80 ~l-------~~G---------------~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-------- 129 (232)
T cd06212 80 GL-------AVG---------------DPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-------- 129 (232)
T ss_pred cC-------CCC---------------CEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC--------
Confidence 32 123 689999999998744345789999999999999999999987541
Q ss_pred cccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCC
Q 002259 778 SVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEG 857 (946)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~ 857 (946)
..++++|+|++|+.+++ ++.+.++++++.. ..+.++..+++..++
T Consensus 130 -------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~- 174 (232)
T cd06212 130 -------------------------------SDRPVRFFYGARTARDL-FYLEEIAALGEKI--PDFTFIPALSESPDD- 174 (232)
T ss_pred -------------------------------CCCcEEEEEeccchHHh-ccHHHHHHHHHhC--CCEEEEEEECCCCCC-
Confidence 13679999999999987 5678888877643 246665555543211
Q ss_pred chhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCc
Q 002259 858 DARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGST 937 (946)
Q Consensus 858 d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~ 937 (946)
+. ..+. .|+ +.+.+.+..... .+..||+|||++|++.+.+.+.+. |..
T Consensus 175 ~~--------------------~~~~-----~g~--~~~~~~~~~~~~--~~~~v~~CGp~~~~~~v~~~l~~~---G~~ 222 (232)
T cd06212 175 EG--------------------WSGE-----TGL--VTEVVQRNEATL--AGCDVYLCGPPPMIDAALPVLEMS---GVP 222 (232)
T ss_pred CC--------------------CcCC-----ccc--HHHHHHhhccCc--cCCEEEEECCHHHHHHHHHHHHHc---CCC
Confidence 00 0110 022 223333322111 235699999999999999999884 555
Q ss_pred cEEEEeecC
Q 002259 938 KFEFHKEHF 946 (946)
Q Consensus 938 ~~~fh~E~F 946 (946)
.-.+|.|.|
T Consensus 223 ~~~i~~e~f 231 (232)
T cd06212 223 PDQIFYDKF 231 (232)
T ss_pred HHHeeeccc
Confidence 667888887
No 17
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.93 E-value=7.2e-25 Score=234.08 Aligned_cols=226 Identities=18% Similarity=0.271 Sum_probs=166.1
Q ss_pred EEEEEEEecCCEEEEEEECCCC--CccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEc--CCchHHHHHHHh
Q 002259 625 RLLKVAIYPGNVLTLQMSRPPQ--FRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQL--GDWTQELKRVFS 700 (946)
Q Consensus 625 ~i~~v~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~--G~~T~~L~~~~~ 700 (946)
+|++++.+++++.++++..|.. +.|+||||+.|.++..+...+|||||+|.|.+++++|+||.. |.+|..|.+.+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~- 80 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI- 80 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcC-
Confidence 5678888999999999997654 589999999999975555578999999998778899999998 77898886432
Q ss_pred hcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccccc
Q 002259 701 EACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVS 780 (946)
Q Consensus 701 ~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 780 (946)
.+| ..+.|.||||.+..+....+++||||||+||||++|++++++...
T Consensus 81 ------~~G---------------d~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~----------- 128 (231)
T cd06191 81 ------QPG---------------MTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA----------- 128 (231)
T ss_pred ------CCC---------------CEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC-----------
Confidence 133 789999999997544345678999999999999999999987531
Q ss_pred ccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchh
Q 002259 781 DFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDAR 860 (946)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~ 860 (946)
..++++|+|++|+.+++ +|.++|+++++.. ..+.++.++|+.....+.
T Consensus 129 ----------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~~~~- 176 (231)
T cd06191 129 ----------------------------PESDFTLIHSARTPADM-IFAQELRELADKP--QRLRLLCIFTRETLDSDL- 176 (231)
T ss_pred ----------------------------CCCCEEEEEecCCHHHH-hHHHHHHHHHHhC--CCeEEEEEECCCCCCccc-
Confidence 13679999999999987 6788888887643 357777777654221100
Q ss_pred HHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEE
Q 002259 861 SALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFE 940 (946)
Q Consensus 861 ~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~ 940 (946)
.+.+ |+- -.++....... .....||+|||+.|++.+++.+++ .|.+.-.
T Consensus 177 --------------------~~~~-----~~~-~~~l~~~~~~~--~~~~~vyicGp~~mv~~~~~~l~~---~G~~~~~ 225 (231)
T cd06191 177 --------------------LHGR-----IDG-EQSLGAALIPD--RLEREAFICGPAGMMDAVETALKE---LGMPPER 225 (231)
T ss_pred --------------------cCCc-----ccc-cHHHHHHhCcc--ccCCeEEEECCHHHHHHHHHHHHH---cCCCHHH
Confidence 0000 110 02222222111 123579999999999999999977 3556667
Q ss_pred EEeecC
Q 002259 941 FHKEHF 946 (946)
Q Consensus 941 fh~E~F 946 (946)
+|.|.|
T Consensus 226 i~~E~f 231 (231)
T cd06191 226 IHTERF 231 (231)
T ss_pred eeeccC
Confidence 888887
No 18
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.93 E-value=6.8e-25 Score=234.16 Aligned_cols=225 Identities=25% Similarity=0.367 Sum_probs=169.7
Q ss_pred EEEEEEEecCCEEEEEEECCCC--CccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHHHHHH
Q 002259 625 RLLKVAIYPGNVLTLQMSRPPQ--FRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQELKRVF 699 (946)
Q Consensus 625 ~i~~v~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L~~~~ 699 (946)
+|++++.+++++.+++++.|.. +.|+||||+.|++|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~ 81 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNL 81 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcC
Confidence 5678888999999999999876 78999999999998666556899999999865 4699999998 88998876432
Q ss_pred hhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccc
Q 002259 700 SEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSV 779 (946)
Q Consensus 700 ~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~ 779 (946)
.+| ..+.|.||||.+.......+++||||||+||||+++++++++...
T Consensus 82 -------~~G---------------~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~---------- 129 (231)
T cd06215 82 -------KVG---------------DELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR---------- 129 (231)
T ss_pred -------CCC---------------CEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----------
Confidence 133 689999999997643334689999999999999999999887531
Q ss_pred cccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCch
Q 002259 780 SDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDA 859 (946)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~ 859 (946)
..++++|+|++|+.+++ .+.+.|+++++.. ..+.++.++|+..+.
T Consensus 130 -----------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~~~~~~~--- 174 (231)
T cd06215 130 -----------------------------PDADIVFIHSARSPADI-IFADELEELARRH--PNFRLHLILEQPAPG--- 174 (231)
T ss_pred -----------------------------CCCcEEEEEecCChhhh-hHHHHHHHHHHHC--CCeEEEEEEccCCCC---
Confidence 13679999999999987 5777888887653 247888887753211
Q ss_pred hHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccE
Q 002259 860 RSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKF 939 (946)
Q Consensus 860 ~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~ 939 (946)
. . ....||.+.. ++.+..... ....||+|||++|++.+++.+++. |.+.-
T Consensus 175 ~-------------------~-----~~~~g~~~~~-~l~~~~~~~--~~~~v~icGp~~m~~~~~~~l~~~---gv~~~ 224 (231)
T cd06215 175 A-------------------W-----GGYRGRLNAE-LLALLVPDL--KERTVFVCGPAGFMKAVKSLLAEL---GFPMS 224 (231)
T ss_pred c-------------------c-----cccCCcCCHH-HHHHhcCCc--cCCeEEEECCHHHHHHHHHHHHHc---CCCHH
Confidence 0 0 0122566542 344433221 235799999999999999999874 45566
Q ss_pred EEEeecC
Q 002259 940 EFHKEHF 946 (946)
Q Consensus 940 ~fh~E~F 946 (946)
.+|.|.|
T Consensus 225 ~i~~e~f 231 (231)
T cd06215 225 RFHQESF 231 (231)
T ss_pred HeeeecC
Confidence 7888887
No 19
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=1.2e-24 Score=231.74 Aligned_cols=222 Identities=18% Similarity=0.303 Sum_probs=165.5
Q ss_pred eEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEc--CCchHHHHHHH
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQL--GDWTQELKRVF 699 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~--G~~T~~L~~~~ 699 (946)
+++|.+++.++++++++++..+..+.|+||||+.|+++... .+|||||+|+|. ++.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 35678888999999999999877788999999999998654 689999999986 47899999987 88999886532
Q ss_pred hhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccc
Q 002259 700 SEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSV 779 (946)
Q Consensus 700 ~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~ 779 (946)
+ +| ..+.|+||||.+..+ ...+++|||||||||||++++++++..+.
T Consensus 80 ~-------~G---------------~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~---------- 126 (227)
T cd06213 80 R-------TG---------------ERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG---------- 126 (227)
T ss_pred C-------CC---------------CEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC----------
Confidence 1 23 689999999998643 34578999999999999999999987531
Q ss_pred cccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCch
Q 002259 780 SDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDA 859 (946)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~ 859 (946)
..++++++|.+|+.+++ ++.+.+.++++... ..+.++.++++..+..+
T Consensus 127 -----------------------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~s~~~~~~~- 174 (227)
T cd06213 127 -----------------------------TKRDVTLLFGARTQRDL-YALDEIAAIAARWR-GRFRFIPVLSEEPADSS- 174 (227)
T ss_pred -----------------------------CCCcEEEEEeeCCHHHh-ccHHHHHHHHHhcc-CCeEEEEEecCCCCCCC-
Confidence 13679999999999887 77788888875432 34666666654311100
Q ss_pred hHHHHHHHHhhhcccCCCccccCCccccccCCC-CHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCcc
Q 002259 860 RSALITMVQALNHAKNGVDIVSGTRVRTHFARP-NWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTK 938 (946)
Q Consensus 860 ~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRP-d~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~ 938 (946)
. .|++ ...+.+.+.. .....||+|||+.|++.+++.+.+. |.+.
T Consensus 175 --------------------~--------~g~~g~v~~~l~~~~----~~~~~v~~CGp~~~~~~~~~~l~~~---G~~~ 219 (227)
T cd06213 175 --------------------W--------KGARGLVTEHIAEVL----LAATEAYLCGPPAMIDAAIAVLRAL---GIAR 219 (227)
T ss_pred --------------------c--------cCCcccHHHHHHhhc----cCCCEEEEECCHHHHHHHHHHHHHc---CCCH
Confidence 0 0111 2223333322 1235799999999999999999884 4455
Q ss_pred EEEEeecC
Q 002259 939 FEFHKEHF 946 (946)
Q Consensus 939 ~~fh~E~F 946 (946)
-.+|.|.|
T Consensus 220 ~~i~~e~f 227 (227)
T cd06213 220 EHIHADRF 227 (227)
T ss_pred HHEeccCC
Confidence 56888877
No 20
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.93 E-value=1.1e-24 Score=232.80 Aligned_cols=227 Identities=15% Similarity=0.242 Sum_probs=164.6
Q ss_pred EEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHHHHHHhhcC
Q 002259 627 LKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQELKRVFSEAC 703 (946)
Q Consensus 627 ~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 703 (946)
++++.+++++.+++++.+..+.|+||||++|++|..+ ..|||||+|.|.+ +.++|+||.. |.+|+.|.+.++
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~~--- 76 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLE--- 76 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcCC---
Confidence 4567888999999999888888999999999998754 6799999999865 7899999987 789988876321
Q ss_pred CCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccc
Q 002259 704 EPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFS 783 (946)
Q Consensus 704 ~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~ 783 (946)
+| ..+.|+||||.+.......+++||||||+||||++++++++.....
T Consensus 77 ----~g---------------~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~------------- 124 (232)
T cd06190 77 ----PG---------------DELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY------------- 124 (232)
T ss_pred ----CC---------------CEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc-------------
Confidence 23 6899999999986444456799999999999999999999875411
Q ss_pred cCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHH
Q 002259 784 RRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSAL 863 (946)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~ 863 (946)
....+++|+|++|+.+++ .+.+++.++++.. ..+.++..+++..+..+.
T Consensus 125 ------------------------~~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~~~~---- 173 (232)
T cd06190 125 ------------------------LSDRPVDLFYGGRTPSDL-CALDELSALVALG--ARLRVTPAVSDAGSGSAA---- 173 (232)
T ss_pred ------------------------CCCCeEEEEEeecCHHHH-hhHHHHHHHHHhC--CCEEEEEEeCCCCCCcCC----
Confidence 114689999999999987 6778888887653 346776666543211000
Q ss_pred HHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEe
Q 002259 864 ITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHK 943 (946)
Q Consensus 864 ~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~ 943 (946)
-..+ +.|+.. +.+.+..... .....||+|||++|++.+++.+.+... .+.-.+|.
T Consensus 174 ---------------~~~~-----~~g~v~--~~l~~~~~~~-~~~~~vyiCGp~~m~~~v~~~l~~~g~--~~~~~i~~ 228 (232)
T cd06190 174 ---------------GWDG-----PTGFVH--EVVEATLGDR-LAEFEFYFAGPPPMVDAVQRMLMIEGV--VPFDQIHF 228 (232)
T ss_pred ---------------CccC-----CcCcHH--HHHHhhccCC-ccccEEEEECCHHHHHHHHHHHHHhCC--CChHheee
Confidence 0001 112322 3344332221 234679999999999999999887421 22446788
Q ss_pred ecC
Q 002259 944 EHF 946 (946)
Q Consensus 944 E~F 946 (946)
|.|
T Consensus 229 e~f 231 (232)
T cd06190 229 DRF 231 (232)
T ss_pred ccc
Confidence 887
No 21
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.93 E-value=1.5e-24 Score=232.23 Aligned_cols=228 Identities=18% Similarity=0.278 Sum_probs=169.0
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCC--CccCCCcEEEEEcCCCC-CCccccceeccCCCC-CeEEEEEEEc--CCchHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQ--FRYKSGQYMFVQCPAVS-PFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQEL 695 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~s-~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L 695 (946)
..++|++++.+++++.+++|..|.. ..|+||||+.|++|... ...+|||||++.|.+ +.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 2 RVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred ceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHHH
Confidence 4577889999999999999998876 78999999999998433 346799999999864 5899999997 6688887
Q ss_pred HHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhh
Q 002259 696 KRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQ 775 (946)
Q Consensus 696 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~ 775 (946)
.+.+. +| ..+.|.||||.+.......+++||||||+||||++++++++++..
T Consensus 82 ~~~l~-------~G---------------d~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~------ 133 (235)
T cd06217 82 HDEVK-------VG---------------DLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG------ 133 (235)
T ss_pred HhcCC-------CC---------------CEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC------
Confidence 65321 23 789999999997533334689999999999999999999987541
Q ss_pred cccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccC
Q 002259 776 ADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYE 855 (946)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~ 855 (946)
..++++++|.+|+.+++ ++.++|.++++.. ..+.++.++|+..+
T Consensus 134 ---------------------------------~~~~i~l~~~~r~~~~~-~~~~el~~~~~~~--~~~~~~~~~s~~~~ 177 (235)
T cd06217 134 ---------------------------------WPVPFRLLYSARTAEDV-IFRDELEQLARRH--PNLHVTEALTRAAP 177 (235)
T ss_pred ---------------------------------CCceEEEEEecCCHHHh-hHHHHHHHHHHHC--CCeEEEEEeCCCCC
Confidence 13679999999999986 6788888877643 24677777664311
Q ss_pred CCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCC
Q 002259 856 EGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKG 935 (946)
Q Consensus 856 ~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~ 935 (946)
+. .. -+.||.+.. ++.+.... .....||+|||++|++++++.+.+. |
T Consensus 178 --~~--------------------~~-----~~~g~~~~~-~l~~~~~~--~~~~~v~icGp~~m~~~v~~~l~~~---G 224 (235)
T cd06217 178 --AD--------------------WL-----GPAGRITAD-LIAELVPP--LAGRRVYVCGPPAFVEAATRLLLEL---G 224 (235)
T ss_pred --CC--------------------cC-----CcCcEeCHH-HHHhhCCC--ccCCEEEEECCHHHHHHHHHHHHHc---C
Confidence 10 01 122555532 23333211 2335799999999999999999874 4
Q ss_pred CccEEEEeecC
Q 002259 936 STKFEFHKEHF 946 (946)
Q Consensus 936 ~~~~~fh~E~F 946 (946)
...-.+|.|.|
T Consensus 225 v~~~~i~~E~f 235 (235)
T cd06217 225 VPRDRIRTEAF 235 (235)
T ss_pred CCHHHEeeccC
Confidence 45556788887
No 22
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=1.4e-24 Score=230.64 Aligned_cols=220 Identities=17% Similarity=0.319 Sum_probs=162.6
Q ss_pred EEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHHHHHHhhcC
Q 002259 627 LKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQELKRVFSEAC 703 (946)
Q Consensus 627 ~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 703 (946)
++++.+++++.++++..|..+.|+||||+.|.+|.... .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.++
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l~--- 77 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELK--- 77 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcCc---
Confidence 56778889999999998877889999999999987543 6799999999865 7899999998 889998876321
Q ss_pred CCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccc
Q 002259 704 EPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFS 783 (946)
Q Consensus 704 ~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~ 783 (946)
+| ..+.|.||||.+......++++||||||+||||++|+++++..+.
T Consensus 78 ----~G---------------~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-------------- 124 (224)
T cd06187 78 ----VG---------------DRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-------------- 124 (224)
T ss_pred ----cC---------------CEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC--------------
Confidence 23 789999999997643344788999999999999999999987541
Q ss_pred cCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHH
Q 002259 784 RRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSAL 863 (946)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~ 863 (946)
..+++.++|.+|+.+++ ++.+.++++++... .+.++.++++..+..
T Consensus 125 -------------------------~~~~v~l~~~~~~~~~~-~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~------ 170 (224)
T cd06187 125 -------------------------EPRPVHLFFGARTERDL-YDLEGLLALAARHP--WLRVVPVVSHEEGAW------ 170 (224)
T ss_pred -------------------------CCCCEEEEEecCChhhh-cChHHHHHHHHhCC--CeEEEEEeCCCCCcc------
Confidence 14689999999999987 56677777766432 466666665421100
Q ss_pred HHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEe
Q 002259 864 ITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHK 943 (946)
Q Consensus 864 ~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~ 943 (946)
.|. +-...+.+.+... +.....||+|||++|++.+++.+++. |...-.+|.
T Consensus 171 -----------------~~~-------~g~~~~~~~~~~~--~~~~~~v~vcGp~~~~~~v~~~l~~~---G~~~~~i~~ 221 (224)
T cd06187 171 -----------------TGR-------RGLVTDVVGRDGP--DWADHDIYICGPPAMVDATVDALLAR---GAPPERIHF 221 (224)
T ss_pred -----------------CCC-------cccHHHHHHHhcc--ccccCEEEEECCHHHHHHHHHHHHHc---CCCHHHeec
Confidence 000 1111222222111 12345799999999999999999874 445556777
Q ss_pred ecC
Q 002259 944 EHF 946 (946)
Q Consensus 944 E~F 946 (946)
|.|
T Consensus 222 e~f 224 (224)
T cd06187 222 DKF 224 (224)
T ss_pred cCC
Confidence 877
No 23
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.93 E-value=1.1e-24 Score=231.19 Aligned_cols=216 Identities=20% Similarity=0.306 Sum_probs=161.8
Q ss_pred EEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHHHHHHhhcC
Q 002259 627 LKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQELKRVFSEAC 703 (946)
Q Consensus 627 ~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~ 703 (946)
.+++.+++++++++++.|..+.|+||||++|++|.. ..|||||+|.|.+ +.++|+||.. |.+|..|.+.++
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~~--- 75 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEAR--- 75 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhccC---
Confidence 467788999999999988888999999999999863 5699999999876 7899999986 678988876421
Q ss_pred CCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCC-CCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccccccc
Q 002259 704 EPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDY-RNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDF 782 (946)
Q Consensus 704 ~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~-~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~ 782 (946)
+| ..+.|.||||.+.... ...+++|+||||+||||+++++++++...
T Consensus 76 ----~G---------------~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~------------- 123 (222)
T cd06194 76 ----PG---------------HALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG------------- 123 (222)
T ss_pred ----CC---------------CEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC-------------
Confidence 23 6899999999986432 45678999999999999999999987531
Q ss_pred ccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHH
Q 002259 783 SRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSA 862 (946)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~ 862 (946)
..++|+++|++|+.+++ +|.++++++++... .+.++.++++.... ..
T Consensus 124 --------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~~--~~~~~~~~~~~~~~-~~--- 170 (222)
T cd06194 124 --------------------------HQGEIRLVHGARDPDDL-YLHPALLWLAREHP--NFRYIPCVSEGSQG-DP--- 170 (222)
T ss_pred --------------------------CCccEEEEEecCChhhc-cCHHHHHHHHHHCC--CeEEEEEEccCCCC-Cc---
Confidence 13679999999999987 78888888876432 46666666542111 00
Q ss_pred HHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEE
Q 002259 863 LITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFH 942 (946)
Q Consensus 863 ~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh 942 (946)
+....++...+.. ......||+|||+.|++.+++.+.+. |.+.-.+|
T Consensus 171 ----------------------------~~~~~~~~~~~~~--~~~~~~vyicGp~~m~~~~~~~L~~~---Gv~~~~i~ 217 (222)
T cd06194 171 ----------------------------RVRAGRIAAHLPP--LTRDDVVYLCGAPSMVNAVRRRAFLA---GAPMKRIY 217 (222)
T ss_pred ----------------------------ccccchhhhhhcc--ccCCCEEEEeCCHHHHHHHHHHHHHc---CCCHHHee
Confidence 0000112222111 12346799999999999999999874 55666788
Q ss_pred eecC
Q 002259 943 KEHF 946 (946)
Q Consensus 943 ~E~F 946 (946)
.|.|
T Consensus 218 ~e~f 221 (222)
T cd06194 218 ADPF 221 (222)
T ss_pred eccc
Confidence 8877
No 24
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.93 E-value=2.2e-24 Score=231.47 Aligned_cols=227 Identities=18% Similarity=0.251 Sum_probs=167.9
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCCC--ccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEc--CCchHHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQF--RYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQL--GDWTQELK 696 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~~--~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~--G~~T~~L~ 696 (946)
+.++|++++.+++++..+++..|... .|+||||+.|++|... +.|||||+|.|. ++.+.|+||.. |..|..|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 46788999999999999999987654 8999999999998643 679999999986 57899999997 88899886
Q ss_pred HHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhc
Q 002259 697 RVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQA 776 (946)
Q Consensus 697 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~ 776 (946)
+.+ .+| ..|.|.||||.+.......+++|+||||+||||++|++++++.+.
T Consensus 85 ~~l-------~~G---------------~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~------- 135 (238)
T cd06211 85 KQL-------KEG---------------DELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG------- 135 (238)
T ss_pred hcC-------CCC---------------CEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC-------
Confidence 422 123 689999999998643334578999999999999999999987541
Q ss_pred ccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCC
Q 002259 777 DSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEE 856 (946)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~ 856 (946)
..+++.|+|++|+.+++ +|.++++++++... .+.++..+++..++
T Consensus 136 --------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~--~~~~~~~~s~~~~~ 180 (238)
T cd06211 136 --------------------------------DTRKITLFFGARTRAEL-YYLDEFEALEKDHP--NFKYVPALSREPPE 180 (238)
T ss_pred --------------------------------CCCcEEEEEecCChhhh-ccHHHHHHHHHhCC--CeEEEEEECCCCCC
Confidence 02579999999999987 88888988876533 35665555543211
Q ss_pred CchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCC
Q 002259 857 GDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGS 936 (946)
Q Consensus 857 ~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~ 936 (946)
+. ..| ..||. .+++.+..... .....||+|||+.|++.+.+.+.+. |.
T Consensus 181 -~~--------------------~~~-----~~g~v--~~~l~~~~~~~-~~~~~vyvCGp~~m~~~~~~~L~~~---Gv 228 (238)
T cd06211 181 -SN--------------------WKG-----FTGFV--HDAAKKHFKND-FRGHKAYLCGPPPMIDACIKTLMQG---RL 228 (238)
T ss_pred -cC--------------------ccc-----ccCcH--HHHHHHhcccc-cccCEEEEECCHHHHHHHHHHHHHc---CC
Confidence 10 011 01232 23444433211 1235799999999999999999884 44
Q ss_pred ccEEEEeecC
Q 002259 937 TKFEFHKEHF 946 (946)
Q Consensus 937 ~~~~fh~E~F 946 (946)
+.-.+|.|.|
T Consensus 229 ~~~~i~~e~F 238 (238)
T cd06211 229 FERDIYYEKF 238 (238)
T ss_pred CHHHccccCC
Confidence 5556888887
No 25
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=1.6e-24 Score=238.57 Aligned_cols=230 Identities=18% Similarity=0.311 Sum_probs=168.0
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCC--CccCCCcEEEEEcCCC-----------------------------CCCccccc
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQ--FRYKSGQYMFVQCPAV-----------------------------SPFEWHPF 670 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~--~~~~pGQ~v~l~~p~~-----------------------------s~~e~HPF 670 (946)
..++|++++.+++++.++++..|.. +.|+||||+.|.+|.. .....|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 4577888899999999999998765 7899999999999853 11235999
Q ss_pred eeccCCC-CCeEEEEEEE-----------cCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCC
Q 002259 671 SITSAPG-DDYLSVHIRQ-----------LGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQ 738 (946)
Q Consensus 671 TIas~p~-~~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~ 738 (946)
||+|+|. ++.++|+||. .|..|+.|.++ .+| ..|.|.||||.+..
T Consensus 90 Sias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l--------~~G---------------d~v~i~gP~G~f~l 146 (283)
T cd06188 90 SLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNL--------KPG---------------DKVTASGPFGEFFI 146 (283)
T ss_pred CcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhcC--------CCC---------------CEEEEECccccccc
Confidence 9999996 5789999996 46688888653 134 78999999999875
Q ss_pred CCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEE
Q 002259 739 DYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWV 818 (946)
Q Consensus 739 ~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv 818 (946)
. ...+++|||||||||||++|++++++.... ..++++|+|+
T Consensus 147 ~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~--------------------------------------~~~~v~l~~g 187 (283)
T cd06188 147 K-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK--------------------------------------SKRKISFWYG 187 (283)
T ss_pred c-CCCCcEEEEEecccHhHHHHHHHHHHhcCC--------------------------------------CCceEEEEEe
Confidence 3 356789999999999999999999875421 1368999999
Q ss_pred eCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHH
Q 002259 819 TREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVL 898 (946)
Q Consensus 819 ~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~ 898 (946)
+|+.+++ +|.++|.++++... .+.++..+|+..+. +. ..| ..||.+ +.+.
T Consensus 188 ~r~~~d~-~~~~el~~l~~~~~--~~~~~~~~s~~~~~-~~--------------------~~~-----~~G~v~-~~~~ 237 (283)
T cd06188 188 ARSLKEL-FYQEEFEALEKEFP--NFKYHPVLSEPQPE-DN--------------------WDG-----YTGFIH-QVLL 237 (283)
T ss_pred cCCHHHh-hHHHHHHHHHHHCC--CeEEEEEECCCCcc-CC--------------------CCC-----cceeec-HHHH
Confidence 9999886 78888888876543 36666665543210 10 001 113332 1233
Q ss_pred HHHHhhcC-CCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEeecC
Q 002259 899 SKLSSKHC-NARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHKEHF 946 (946)
Q Consensus 899 ~~~~~~~~-~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~E~F 946 (946)
+.....+. ..+..||+|||+.|++.+++.+++. |.+.-.+|.|.|
T Consensus 238 ~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~---Gv~~~~i~~e~F 283 (283)
T cd06188 238 ENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDL---GVPRENIAFDDF 283 (283)
T ss_pred HHHhccCCCCCCeEEEEECCHHHHHHHHHHHHHc---CCCHHHeeccCC
Confidence 33332221 2356799999999999999999884 556677898887
No 26
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.93 E-value=5.2e-24 Score=228.87 Aligned_cols=230 Identities=20% Similarity=0.330 Sum_probs=170.4
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCC----CccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEc--CCchHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQ----FRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQL--GDWTQEL 695 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~----~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~--G~~T~~L 695 (946)
+.++|++++.+++++.++++..|.. +.|+||||+.|.+|..+...+|||||+|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4567889999999999999998764 579999999999985555678999999998877999999997 7788888
Q ss_pred HHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhh
Q 002259 696 KRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYR-NYDVLLLVGLGIGATPFISILKDLLNNIVKQEE 774 (946)
Q Consensus 696 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~ 774 (946)
.+.+ .+| ..+.|.||+|.+..... .++++||||||+||||+++++++++...
T Consensus 82 ~~~~-------~~G---------------~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~----- 134 (241)
T cd06214 82 NDEL-------KAG---------------DTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE----- 134 (241)
T ss_pred Hhcc-------CCC---------------CEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC-----
Confidence 6432 123 67999999998764333 5789999999999999999999987542
Q ss_pred hcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEeccc
Q 002259 775 QADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVY 854 (946)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~ 854 (946)
..++++++|++|+.+++ ++.+.++++++... ..+.++.++|...
T Consensus 135 ----------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~~~~~ 178 (241)
T cd06214 135 ----------------------------------PASRVTLVYGNRTEASV-IFREELADLKARYP-DRLTVIHVLSREQ 178 (241)
T ss_pred ----------------------------------CCCcEEEEEEeCCHHHh-hHHHHHHHHHHhCc-CceEEEEEecCCC
Confidence 13679999999999987 78888888865432 3566666665321
Q ss_pred CCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhh--cCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 855 EEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSK--HCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 855 ~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~--~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
.. . . .+.||.+.. ++...... .+.....||+|||+.|++.+++.+++.
T Consensus 179 ~~-~----------------------~-----~~~g~~~~~-~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~- 228 (241)
T cd06214 179 GD-P----------------------D-----LLRGRLDAA-KLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLEL- 228 (241)
T ss_pred CC-c----------------------c-----cccCccCHH-HHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHc-
Confidence 10 0 0 123565532 22222211 123446799999999999999999874
Q ss_pred cCCCccEEEEeecC
Q 002259 933 QKGSTKFEFHKEHF 946 (946)
Q Consensus 933 ~~~~~~~~fh~E~F 946 (946)
|...-.+|.|.|
T Consensus 229 --G~~~~~i~~e~f 240 (241)
T cd06214 229 --GVPAERIHRELF 240 (241)
T ss_pred --CCCHHHeecccc
Confidence 445556777876
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.92 E-value=4e-24 Score=226.48 Aligned_cols=208 Identities=21% Similarity=0.316 Sum_probs=157.0
Q ss_pred EEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHHHHHHhhcCCC
Q 002259 629 VAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQELKRVFSEACEP 705 (946)
Q Consensus 629 v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L~~~~~~~~~~ 705 (946)
++.+++++..+++..+....|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~------- 75 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDL------- 75 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcC-------
Confidence 45667899999999887778999999999999765678999999999976 8999999999 9999998765
Q ss_pred CCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccC
Q 002259 706 PVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRR 785 (946)
Q Consensus 706 ~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~ 785 (946)
..| .++.|.||||.+......++++||||||+||||++++++++....
T Consensus 76 -~~G---------------~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~---------------- 123 (223)
T cd00322 76 -KPG---------------DEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK---------------- 123 (223)
T ss_pred -CCC---------------CEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----------------
Confidence 123 689999999998544567789999999999999999999987642
Q ss_pred CCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHH
Q 002259 786 SDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALIT 865 (946)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~ 865 (946)
..++++++|++|+.+++ ++.+++.++++.. ..++++.++++.......
T Consensus 124 -----------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~~~~~------ 171 (223)
T cd00322 124 -----------------------PGGEITLLYGARTPADL-LFLDELEELAKEG--PNFRLVLALSRESEAKLG------ 171 (223)
T ss_pred -----------------------CCCcEEEEEecCCHHHh-hHHHHHHHHHHhC--CCeEEEEEecCCCCCCCc------
Confidence 14689999999999876 7888888887743 346777666643211000
Q ss_pred HHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhh
Q 002259 866 MVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEF 931 (946)
Q Consensus 866 ~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~ 931 (946)
..++......+..... ......||+|||++|++.+++.+.+.
T Consensus 172 ----------------------~~~~~~~~~~~~~~~~--~~~~~~~yvCGp~~m~~~~~~~L~~~ 213 (223)
T cd00322 172 ----------------------PGGRIDREAEILALLP--DDSGALVYICGPPAMAKAVREALVSL 213 (223)
T ss_pred ----------------------ccceeeHHHHHHhhcc--cccCCEEEEECCHHHHHHHHHHHHHc
Confidence 0011111111221111 12346799999999999999999874
No 28
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=6.5e-24 Score=224.67 Aligned_cols=213 Identities=24% Similarity=0.373 Sum_probs=157.6
Q ss_pred eEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCC-CCccccceeccCCCCCeEEEEEEEc---CCchHHHHHH
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVS-PFEWHPFSITSAPGDDYLSVHIRQL---GDWTQELKRV 698 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s-~~e~HPFTIas~p~~~~l~l~Ir~~---G~~T~~L~~~ 698 (946)
.++|++++.+++++.++++..|..+.|+||||+.|.++..+ ..++|||||+|.|+++.+.|+||.. |++|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 46788999999999999999988889999999999997643 2478999999999889999999986 6788887543
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccc
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADS 778 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~ 778 (946)
.+| ..+.|.||||.+.. .+++||||||+||||++|++++++...
T Consensus 82 --------~~G---------------~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~--------- 125 (218)
T cd06196 82 --------QPG---------------DTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG--------- 125 (218)
T ss_pred --------CCC---------------CEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC---------
Confidence 134 68999999998642 257999999999999999999987531
Q ss_pred ccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCc
Q 002259 779 VSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGD 858 (946)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d 858 (946)
..++++|+|++|+.+++ ++.++|+++.. +.++.++++....
T Consensus 126 ------------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~------~~~~~~~s~~~~~-- 166 (218)
T cd06196 126 ------------------------------KLEGNTLIFANKTEKDI-ILKDELEKMLG------LKFINVVTDEKDP-- 166 (218)
T ss_pred ------------------------------CCceEEEEEecCCHHHH-hhHHHHHHhhc------ceEEEEEcCCCCC--
Confidence 13678999999998886 67777776632 3444455532100
Q ss_pred hhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCcc
Q 002259 859 ARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTK 938 (946)
Q Consensus 859 ~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~ 938 (946)
....||.+- +++++... .....||+|||+.|++++++.+.+. |.+.
T Consensus 167 ---------------------------~~~~g~~~~-~~l~~~~~---~~~~~vyiCGp~~m~~~~~~~l~~~---G~~~ 212 (218)
T cd06196 167 ---------------------------GYAHGRIDK-AFLKQHVT---DFNQHFYVCGPPPMEEAINGALKEL---GVPE 212 (218)
T ss_pred ---------------------------CeeeeEECH-HHHHHhcC---CCCCEEEEECCHHHHHHHHHHHHHc---CCCH
Confidence 011245542 34444322 1224699999999999999999885 3334
Q ss_pred EEEEee
Q 002259 939 FEFHKE 944 (946)
Q Consensus 939 ~~fh~E 944 (946)
-.+|.|
T Consensus 213 ~~i~~E 218 (218)
T cd06196 213 DSIVFE 218 (218)
T ss_pred HHEecC
Confidence 444544
No 29
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.92 E-value=9.3e-24 Score=238.50 Aligned_cols=226 Identities=22% Similarity=0.357 Sum_probs=165.6
Q ss_pred eeeEEEEEEEEecCCEEEEEEECC--CCCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHH
Q 002259 621 FSTVRLLKVAIYPGNVLTLQMSRP--PQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQEL 695 (946)
Q Consensus 621 ~~~~~i~~v~~~~~~v~~l~l~~p--~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L 695 (946)
...++|++++.++++++.|+|..| ..+.|+||||+.|.+|.. ++|||||+|.|++ ++++|+||.. |.+|+.|
T Consensus 102 ~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 102 KLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHHH
Confidence 356788999999999999999876 357899999999999853 5799999999975 7999999976 7788888
Q ss_pred HHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhh
Q 002259 696 KRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQ 775 (946)
Q Consensus 696 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~ 775 (946)
.+.++ +| ..+.|+||||.+..+....+++||||||+||||++|++++++...
T Consensus 179 ~~~l~-------~G---------------~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~------ 230 (339)
T PRK07609 179 FGALK-------ER---------------DILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG------ 230 (339)
T ss_pred HHhcc-------CC---------------CEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC------
Confidence 65432 33 689999999998754446678999999999999999999997531
Q ss_pred cccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccC
Q 002259 776 ADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYE 855 (946)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~ 855 (946)
..++++|+|++|+.+++ .+.+++.++++... .+.++..+++...
T Consensus 231 ---------------------------------~~~~i~l~~g~r~~~dl-~~~e~l~~~~~~~~--~~~~~~~~s~~~~ 274 (339)
T PRK07609 231 ---------------------------------IQRPVTLYWGARRPEDL-YLSALAEQWAEELP--NFRYVPVVSDALD 274 (339)
T ss_pred ---------------------------------CCCcEEEEEecCChHHh-ccHHHHHHHHHhCC--CeEEEEEecCCCC
Confidence 13679999999999986 56777777766443 4677666664311
Q ss_pred CCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCC
Q 002259 856 EGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKG 935 (946)
Q Consensus 856 ~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~ 935 (946)
+ +. ..|. .|+.+ +.++..+. . .....||+|||+.|++.+++.+.+. |
T Consensus 275 ~-~~--------------------~~g~-----~G~v~-~~~~~~~~-~--~~~~~vy~CGp~~m~~~~~~~l~~~---G 321 (339)
T PRK07609 275 D-DA--------------------WTGR-----TGFVH-QAVLEDFP-D--LSGHQVYACGSPVMVYAARDDFVAA---G 321 (339)
T ss_pred C-CC--------------------ccCc-----cCcHH-HHHHhhcc-c--ccCCEEEEECCHHHHHHHHHHHHHc---C
Confidence 1 10 0110 12221 11222211 1 1235799999999999999999874 4
Q ss_pred CccEEEEeecC
Q 002259 936 STKFEFHKEHF 946 (946)
Q Consensus 936 ~~~~~fh~E~F 946 (946)
.+.-.+|.|.|
T Consensus 322 ~~~~~i~~e~F 332 (339)
T PRK07609 322 LPAEEFFADAF 332 (339)
T ss_pred CCHHHeEEeec
Confidence 45566788877
No 30
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.92 E-value=1.1e-23 Score=239.09 Aligned_cols=230 Identities=17% Similarity=0.269 Sum_probs=167.8
Q ss_pred eeEEEEEEEEecCCEEEEEEECCC----CCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEc--CCchHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPP----QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQL--GDWTQEL 695 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~----~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~--G~~T~~L 695 (946)
+.++|.+++.+++++.+++|..|. .+.|+||||+.|.++..+...+|||||+|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 456788999999999999999764 2589999999999974444467999999999888999999987 5578877
Q ss_pred HHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCC--CCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhh
Q 002259 696 KRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYR--NYDVLLLVGLGIGATPFISILKDLLNNIVKQE 773 (946)
Q Consensus 696 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~--~~~~vvlIagGiGITP~lsil~~l~~~~~~~~ 773 (946)
.+.+ .+| ..+.|.||+|.+..+.. ..+++||||||+||||++|++++++.+.
T Consensus 82 ~~~l-------~~G---------------d~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~---- 135 (352)
T TIGR02160 82 NDEI-------RPG---------------DTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE---- 135 (352)
T ss_pred HhcC-------CCC---------------CEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC----
Confidence 6432 134 78999999999753322 3478999999999999999999987641
Q ss_pred hhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecc
Q 002259 774 EQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSV 853 (946)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~ 853 (946)
..++++|+|.+|+.+++ +|.+.|+++++... ..+.++..+++.
T Consensus 136 -----------------------------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~s~~ 178 (352)
T TIGR02160 136 -----------------------------------PRSTFTLVYGNRRTASV-MFAEELADLKDKHP-QRFHLAHVLSRE 178 (352)
T ss_pred -----------------------------------CCceEEEEEEeCCHHHH-HHHHHHHHHHHhCc-CcEEEEEEecCC
Confidence 13679999999999987 78888888876432 246776666643
Q ss_pred cCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhc--CCCcEEEEEeCChhHHHHHHHHHHhh
Q 002259 854 YEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKH--CNARIGVFYCGAPVLAKELSKLCYEF 931 (946)
Q Consensus 854 ~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~--~~~~v~V~~CGP~~l~~~vr~~~~~~ 931 (946)
....+ ...||.+... +.+...+. ......||+|||++|++.+++.+.+.
T Consensus 179 ~~~~~----------------------------~~~gr~~~~~-l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 179 PREAP----------------------------LLSGRLDGER-LAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGL 229 (352)
T ss_pred CcCcc----------------------------cccCccCHHH-HHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHc
Confidence 21100 1235666432 22222211 12235799999999999999999874
Q ss_pred hcCCCccEEEEeecC
Q 002259 932 NQKGSTKFEFHKEHF 946 (946)
Q Consensus 932 ~~~~~~~~~fh~E~F 946 (946)
|.+.-.+|.|.|
T Consensus 230 ---Gv~~~~i~~E~F 241 (352)
T TIGR02160 230 ---GVPAGRVHLELF 241 (352)
T ss_pred ---CCCHHHEEEEec
Confidence 445556777776
No 31
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.92 E-value=1e-23 Score=237.23 Aligned_cols=225 Identities=20% Similarity=0.301 Sum_probs=166.7
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHHHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQELKRV 698 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L~~~ 698 (946)
+.++|+++..+++++..++|..+..+.|+||||+.|.++... ..+|||||+|.|.+ +.++|+||.. |..|+.|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~~-~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNSA-ETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCCC-EeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 356788899999999999998877788999999999998532 35699999999964 6899999997 7788888643
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccc
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADS 778 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~ 778 (946)
+ ++| ..+.|.||+|.+..+....+++|||||||||||++|++++++.+.
T Consensus 89 l-------~~G---------------d~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~--------- 137 (332)
T PRK10684 89 V-------KRG---------------DYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR--------- 137 (332)
T ss_pred C-------CCC---------------CEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC---------
Confidence 2 134 789999999998644345678999999999999999999886531
Q ss_pred ccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCc
Q 002259 779 VSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGD 858 (946)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d 858 (946)
..++++|+|++|+.+++ .|.++|+++++... .+.++.+.++.. .
T Consensus 138 ------------------------------~~~~v~l~y~~r~~~~~-~~~~el~~l~~~~~--~~~~~~~~~~~~--~- 181 (332)
T PRK10684 138 ------------------------------PQADVQVIFNVRTPQDV-IFADEWRQLKQRYP--QLNLTLVAENNA--T- 181 (332)
T ss_pred ------------------------------CCCCEEEEEeCCChHHh-hhHHHHHHHHHHCC--CeEEEEEeccCC--C-
Confidence 13689999999999987 67888888876543 245554433210 0
Q ss_pred hhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCcc
Q 002259 859 ARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTK 938 (946)
Q Consensus 859 ~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~ 938 (946)
.| ...||.+.. ++.+..... ....||+|||++|++.+++.+.+. |.+.
T Consensus 182 ----------------------~~----~~~grl~~~-~l~~~~~~~--~~~~vyiCGP~~m~~~v~~~l~~~---Gv~~ 229 (332)
T PRK10684 182 ----------------------EG----FIAGRLTRE-LLQQAVPDL--ASRTVMTCGPAPYMDWVEQEVKAL---GVTA 229 (332)
T ss_pred ----------------------CC----ccccccCHH-HHHHhcccc--cCCEEEEECCHHHHHHHHHHHHHc---CCCH
Confidence 00 123666642 333322111 234699999999999999998874 4555
Q ss_pred EEEEeecC
Q 002259 939 FEFHKEHF 946 (946)
Q Consensus 939 ~~fh~E~F 946 (946)
-.+|.|.|
T Consensus 230 ~~i~~E~F 237 (332)
T PRK10684 230 DRFFKEKF 237 (332)
T ss_pred HHeEeecc
Confidence 66888887
No 32
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.92 E-value=1.3e-23 Score=236.99 Aligned_cols=223 Identities=19% Similarity=0.316 Sum_probs=165.1
Q ss_pred eeeEEEEEEEEecCCEEEEEEECC---CCCccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEc--CCchHH
Q 002259 621 FSTVRLLKVAIYPGNVLTLQMSRP---PQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQL--GDWTQE 694 (946)
Q Consensus 621 ~~~~~i~~v~~~~~~v~~l~l~~p---~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~--G~~T~~ 694 (946)
...++|++++.+++++.+|+|..+ +.+.|+||||+.|.+|+.. .+|||||+|.|. ++.++|+||.. |.+|..
T Consensus 106 ~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 106 KISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPNATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCCCCCeEEEEEEECCCCcchhh
Confidence 345788999999999999999876 4678999999999998643 589999999986 57899999986 557888
Q ss_pred HHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhh
Q 002259 695 LKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEE 774 (946)
Q Consensus 695 L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~ 774 (946)
|.+.+ .+| ..|.|+||||.+..+ ...+++||||||+||||++|++++++...
T Consensus 184 L~~~l-------~~G---------------~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~----- 235 (340)
T PRK11872 184 LRERC-------QVG---------------DEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG----- 235 (340)
T ss_pred HhhCC-------CCC---------------CEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC-----
Confidence 76432 133 789999999998643 33578999999999999999999987531
Q ss_pred hcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEeccc
Q 002259 775 QADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVY 854 (946)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~ 854 (946)
..++++|+|++|+.+++ .|.++|.++++... +++++..+++..
T Consensus 236 ----------------------------------~~~~v~l~~g~r~~~dl-~~~~el~~~~~~~~--~~~~~~~~s~~~ 278 (340)
T PRK11872 236 ----------------------------------CSPPVHLYYGVRHAADL-CELQRLAAYAERLP--NFRYHPVVSKAS 278 (340)
T ss_pred ----------------------------------CCCcEEEEEecCChHHh-ccHHHHHHHHHHCC--CcEEEEEEeCCC
Confidence 13679999999999987 67788888776543 477776666431
Q ss_pred CCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHH-HHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhc
Q 002259 855 EEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSK-LSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQ 933 (946)
Q Consensus 855 ~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~-~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~ 933 (946)
+.. .|. .|+.. +.+.+ ... .....||+||||+|++.+++.+.+.
T Consensus 279 ~~~-----------------------~g~-----~g~v~--~~l~~~~l~---~~~~~vy~CGp~~mv~~~~~~L~~~-- 323 (340)
T PRK11872 279 ADW-----------------------QGK-----RGYIH--EHFDKAQLR---DQAFDMYLCGPPPMVEAVKQWLDEQ-- 323 (340)
T ss_pred CcC-----------------------CCc-----eeecc--HHHHHhhcC---cCCCEEEEeCCHHHHHHHHHHHHHc--
Confidence 110 110 12222 22221 111 1234699999999999999999874
Q ss_pred CCCccEEEEeecC
Q 002259 934 KGSTKFEFHKEHF 946 (946)
Q Consensus 934 ~~~~~~~fh~E~F 946 (946)
|...-.+|.|.|
T Consensus 324 -Gv~~~~i~~E~F 335 (340)
T PRK11872 324 -ALENYRLYYEKF 335 (340)
T ss_pred -CCCHHHEEEeee
Confidence 556677888887
No 33
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.91 E-value=2.3e-23 Score=240.52 Aligned_cols=232 Identities=19% Similarity=0.310 Sum_probs=171.2
Q ss_pred eeeEEEEEEEEecCCEEEEEEECCC---CCccCCCcEEEEEcCCCC--CCccccceeccCCCCCeEEEEEEEc--CCchH
Q 002259 621 FSTVRLLKVAIYPGNVLTLQMSRPP---QFRYKSGQYMFVQCPAVS--PFEWHPFSITSAPGDDYLSVHIRQL--GDWTQ 693 (946)
Q Consensus 621 ~~~~~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~s--~~e~HPFTIas~p~~~~l~l~Ir~~--G~~T~ 693 (946)
+..++|++++.+++++..+++..+. .+.|+||||+.|.++..+ ..++|||||+|.|+++.++|+||.. |..|.
T Consensus 154 ~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S~ 233 (399)
T PRK13289 154 WRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKVSN 233 (399)
T ss_pred cEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCeehH
Confidence 3466788899999999999998764 257999999999986432 3357999999999888999999998 88999
Q ss_pred HHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhh
Q 002259 694 ELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQE 773 (946)
Q Consensus 694 ~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~ 773 (946)
.|.+.+ .+| ..|.|.||||.+..+....+++|||||||||||++|++++++.+.
T Consensus 234 ~L~~~l-------~~G---------------d~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~---- 287 (399)
T PRK13289 234 YLHDHV-------NVG---------------DVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ---- 287 (399)
T ss_pred HHhhcC-------CCC---------------CEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC----
Confidence 887632 134 789999999997644445678999999999999999999987541
Q ss_pred hhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecc
Q 002259 774 EQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSV 853 (946)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~ 853 (946)
..++++|+|++|+.+++ .|.++|+++++... .+.++.++++.
T Consensus 288 -----------------------------------~~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~~--~~~~~~~~s~~ 329 (399)
T PRK13289 288 -----------------------------------PKRPVHFIHAARNGGVH-AFRDEVEALAARHP--NLKAHTWYREP 329 (399)
T ss_pred -----------------------------------CCCCEEEEEEeCChhhc-hHHHHHHHHHHhCC--CcEEEEEECCC
Confidence 13689999999999987 78888888876443 46676666542
Q ss_pred cCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhc
Q 002259 854 YEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQ 933 (946)
Q Consensus 854 ~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~ 933 (946)
... +. .+. ...+.||.+.. ++.+... .....||+|||+.|++.+++.+.+.
T Consensus 330 ~~~-~~---------------------~~~-~~~~~g~i~~~-~l~~~~~---~~~~~vyiCGp~~m~~~v~~~L~~~-- 380 (399)
T PRK13289 330 TEQ-DR---------------------AGE-DFDSEGLMDLE-WLEAWLP---DPDADFYFCGPVPFMQFVAKQLLEL-- 380 (399)
T ss_pred ccc-cc---------------------cCC-cccccCcccHH-HHHhhCC---CCCCEEEEECCHHHHHHHHHHHHHc--
Confidence 110 00 000 00122666633 3333321 1246799999999999999999884
Q ss_pred CCCccEEEEeecC
Q 002259 934 KGSTKFEFHKEHF 946 (946)
Q Consensus 934 ~~~~~~~fh~E~F 946 (946)
|...-.+|.|.|
T Consensus 381 -Gv~~~~I~~E~F 392 (399)
T PRK13289 381 -GVPEERIHYEFF 392 (399)
T ss_pred -CCCHHHeeeecc
Confidence 445556788877
No 34
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.91 E-value=4.9e-24 Score=213.48 Aligned_cols=153 Identities=30% Similarity=0.581 Sum_probs=97.2
Q ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCC
Q 002259 743 YDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQ 822 (946)
Q Consensus 743 ~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~ 822 (946)
|+++||||||+||||++|++++|++.... +....++|+|+|++|+.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~----------------------------------~~~~~~~i~lvW~vR~~ 46 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNR----------------------------------GSSRTRRIKLVWVVRDA 46 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHT----------------------------------T-----EEEEEEEES-T
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhcc----------------------------------ccccccceEEEEeeCch
Confidence 78999999999999999999999987641 12347999999999999
Q ss_pred CchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHh--hhcccCCCccccCCc-cccccCCCCHHHHHH
Q 002259 823 GSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQA--LNHAKNGVDIVSGTR-VRTHFARPNWKKVLS 899 (946)
Q Consensus 823 ~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~--l~~~~~~~d~~sg~~-~~~~~gRPd~~~v~~ 899 (946)
++++||.++|+++.+......+++++|+|+.....+.......+... ......+.|..+..+ +.+++||||++++++
T Consensus 47 ~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~ 126 (156)
T PF08030_consen 47 DELEWFSPELNELLELDRLGNVEVHIYVTRESSAPSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILS 126 (156)
T ss_dssp TTTHHHHHHHHHHHHHHHHTSEEEEEEETT-------------------------------------EEES---HHHHHH
T ss_pred hhhhhhhHHHHHHHHHhccccceEEEEEcCCcccccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHH
Confidence 99999999999888776545799999999987654433322222111 111123445666665 789999999999999
Q ss_pred HHHhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 002259 900 KLSSKHCNARIGVFYCGAPVLAKELSKLCY 929 (946)
Q Consensus 900 ~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~ 929 (946)
+.......++++|++|||++|++++|++|+
T Consensus 127 ~~~~~~~~~~~~V~~CGP~~m~~~vr~~v~ 156 (156)
T PF08030_consen 127 EVASQQSSGRVAVFVCGPPSMVDDVRNAVN 156 (156)
T ss_dssp HHHHHSTT-EEEEEEES-HHHHHHHHHHH-
T ss_pred HHHHhCCCCcEEEEEcCcHHHHHHHHHHhC
Confidence 986677778999999999999999999884
No 35
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.91 E-value=4.4e-23 Score=223.25 Aligned_cols=206 Identities=23% Similarity=0.373 Sum_probs=149.7
Q ss_pred EEEEEecCCEEEEEEECCC----CCccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEcCCchHHHHHHHhh
Q 002259 627 LKVAIYPGNVLTLQMSRPP----QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQLGDWTQELKRVFSE 701 (946)
Q Consensus 627 ~~v~~~~~~v~~l~l~~p~----~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~G~~T~~L~~~~~~ 701 (946)
.+++.+++++..+++..+. .++|+||||+.|.+|..+ .|||||+++|. ++.++|+||..|.+|+.|.++
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l--- 75 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHEL--- 75 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHcC---
Confidence 4667788877777666543 378999999999998653 39999999996 678999999999999988643
Q ss_pred cCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCC-CCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccccc
Q 002259 702 ACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQ-DYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVS 780 (946)
Q Consensus 702 ~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~-~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 780 (946)
..| ..+.|+||||.... +...++++|+||||+||||++|++++++....
T Consensus 76 -----~~G---------------~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~---------- 125 (253)
T cd06221 76 -----KPG---------------DTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE---------- 125 (253)
T ss_pred -----CCC---------------CEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc----------
Confidence 123 68999999999542 22257899999999999999999999986421
Q ss_pred ccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchh
Q 002259 781 DFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDAR 860 (946)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~ 860 (946)
..++++|+|++|+.+++ ++.+.|.++++. ..+.++.++++..+..
T Consensus 126 ----------------------------~~~~i~Li~~~r~~~~~-~~~~~L~~l~~~---~~~~~~~~~s~~~~~~--- 170 (253)
T cd06221 126 ----------------------------DYGKVTLLYGARTPEDL-LFKEELKEWAKR---SDVEVILTVDRAEEGW--- 170 (253)
T ss_pred ----------------------------cCCcEEEEEecCChHHc-chHHHHHHHHhc---CCeEEEEEeCCCCCCc---
Confidence 13689999999999987 678888887764 2466666655321110
Q ss_pred HHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 861 SALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 861 ~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
.+ ..|+.+ +.+.+.... .....||+|||+.|++.+++.+.+.+
T Consensus 171 --------------------~~-----~~g~v~--~~l~~~~~~--~~~~~vyicGp~~mv~~~~~~L~~~G 213 (253)
T cd06221 171 --------------------TG-----NVGLVT--DLLPELTLD--PDNTVAIVCGPPIMMRFVAKELLKLG 213 (253)
T ss_pred --------------------cC-----Cccccc--hhHHhcCCC--cCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 00 012222 233332211 13457999999999999999998754
No 36
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.91 E-value=1.5e-22 Score=223.21 Aligned_cols=223 Identities=22% Similarity=0.272 Sum_probs=153.1
Q ss_pred eeEEEEEEEEecCCE--EEEEEECC---CCCccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEcCCchHHH
Q 002259 622 STVRLLKVAIYPGNV--LTLQMSRP---PQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQLGDWTQEL 695 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v--~~l~l~~p---~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~G~~T~~L 695 (946)
+.++|++++.+++++ +.|++..| ..+.|+||||+.|++|... .|||||+|.|. ++.++|+||..|.+|+.|
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~~G~~S~~L 82 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRRAGRVTTVI 82 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEeCChHHHHH
Confidence 467888999998884 45555444 2477999999999998643 48999999985 478999999999999988
Q ss_pred HHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCC-CCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhh
Q 002259 696 KRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPA-QDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEE 774 (946)
Q Consensus 696 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~-~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~ 774 (946)
.++ .+| ..+.|+||||... .+....+++|||||||||||++|++++++.+..
T Consensus 83 ~~l--------~~G---------------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~---- 135 (289)
T PRK08345 83 HRL--------KEG---------------DIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRW---- 135 (289)
T ss_pred HhC--------CCC---------------CEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCC----
Confidence 643 133 6899999999843 222234689999999999999999998875310
Q ss_pred hcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEeccc
Q 002259 775 QADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVY 854 (946)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~ 854 (946)
..++|+|+|++|+.+++ +|.++|.++++.. ..+.++.++++..
T Consensus 136 ----------------------------------~~~~v~l~~~~r~~~d~-~~~deL~~l~~~~--~~~~~~~~~s~~~ 178 (289)
T PRK08345 136 ----------------------------------KYGNITLIYGAKYYEDL-LFYDELIKDLAEA--ENVKIIQSVTRDP 178 (289)
T ss_pred ----------------------------------CCCcEEEEEecCCHHHh-hHHHHHHHHHhcC--CCEEEEEEecCCC
Confidence 13689999999999987 7888888876533 3577777777521
Q ss_pred CCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 855 EEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 855 ~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
+ .+.. .....+..-....|+. .+++.+.. ....+..||+|||++|++.+++.+++.+
T Consensus 179 ~-~~~~----------------~~~~~~~~~~~~~g~v--~~~~~~~~--~~~~~~~vyiCGP~~m~~~v~~~L~~~G 235 (289)
T PRK08345 179 E-WPGC----------------HGLPQGFIERVCKGVV--TDLFREAN--TDPKNTYAAICGPPVMYKFVFKELINRG 235 (289)
T ss_pred C-CcCc----------------cccccccccccccCch--hhhhhhcC--CCccccEEEEECCHHHHHHHHHHHHHcC
Confidence 1 1100 0000000000111222 12222211 1113457999999999999999998754
No 37
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.91 E-value=1e-22 Score=217.61 Aligned_cols=216 Identities=16% Similarity=0.276 Sum_probs=159.6
Q ss_pred EEEEEEEecCCEEEEEEECCC---CCccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEc--CCchHHHHHH
Q 002259 625 RLLKVAIYPGNVLTLQMSRPP---QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQL--GDWTQELKRV 698 (946)
Q Consensus 625 ~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~--G~~T~~L~~~ 698 (946)
+|.+++.+++++..++|..+. .+.|+||||+.|.+|..+....|||||+|.+. ++.++|+||.. |..|+.|.++
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcC
Confidence 467788899999999998875 37899999999999976666889999999886 45799999986 7788887643
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCC-CEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcc
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNY-DVLLLVGLGIGATPFISILKDLLNNIVKQEEQAD 777 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~-~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~ 777 (946)
.+| ..+.|.||||.+....... +++||||||+||||+++++++++.+..
T Consensus 82 --------~~G---------------~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~------- 131 (234)
T cd06183 82 --------KPG---------------DTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPE------- 131 (234)
T ss_pred --------CCC---------------CEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcC-------
Confidence 123 6899999999975433333 799999999999999999999875310
Q ss_pred cccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCC
Q 002259 778 SVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEG 857 (946)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~ 857 (946)
..++|+|+|.+|+.++. ++.++|+++++.. ...+.++.++|+..+..
T Consensus 132 -------------------------------~~~~i~l~~~~r~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 178 (234)
T cd06183 132 -------------------------------DKTKISLLYANRTEEDI-LLREELDELAKKH-PDRFKVHYVLSRPPEGW 178 (234)
T ss_pred -------------------------------cCcEEEEEEecCCHHHh-hhHHHHHHHHHhC-cccEEEEEEEcCCCcCC
Confidence 14689999999999886 8888888887642 13577777766431110
Q ss_pred chhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHH-HHHHHHHhhh
Q 002259 858 DARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAK-ELSKLCYEFN 932 (946)
Q Consensus 858 d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~-~vr~~~~~~~ 932 (946)
..+.||.+. .+++......+.....||+|||++|++ ++++.+++.+
T Consensus 179 ----------------------------~~~~g~~~~-~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G 225 (234)
T cd06183 179 ----------------------------KGGVGFITK-EMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELG 225 (234)
T ss_pred ----------------------------ccccceECH-HHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcC
Confidence 012245442 233333211012456899999999999 9999998753
No 38
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.90 E-value=1.5e-22 Score=218.51 Aligned_cols=217 Identities=16% Similarity=0.228 Sum_probs=153.9
Q ss_pred eeeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEc--CCchHHHHHH
Q 002259 621 FSTVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQL--GDWTQELKRV 698 (946)
Q Consensus 621 ~~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~--G~~T~~L~~~ 698 (946)
++.++|++++.++++++++++..|. ..|+||||+.|.++..+...+|||||+|.|+++.++|+||.. |..|..|.++
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~l 82 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAAL 82 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHhC
Confidence 4577889999999999999998763 379999999999964333457999999999878999999996 8899988643
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCC-CCC-CCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhc
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPA-QDY-RNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQA 776 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~-~~~-~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~ 776 (946)
.+| ..|.|.||+|... .+. ...+++|||||||||||++|+++++....
T Consensus 83 --------~~G---------------d~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------- 132 (248)
T PRK10926 83 --------KPG---------------DEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------- 132 (248)
T ss_pred --------CCC---------------CEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC-------
Confidence 234 7899999985433 221 23478999999999999999999875321
Q ss_pred ccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCC
Q 002259 777 DSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEE 856 (946)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~ 856 (946)
..++++|+|++|+.+++ .|.++|+++++..+ ..+.++..+++...
T Consensus 133 --------------------------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~-~~~~v~~~~s~~~~- 177 (248)
T PRK10926 133 --------------------------------RFKNLVLVHAARYAADL-SYLPLMQELEQRYE-GKLRIQTVVSRETA- 177 (248)
T ss_pred --------------------------------CCCcEEEEEeCCcHHHH-HHHHHHHHHHHhCc-CCEEEEEEECCCCC-
Confidence 13679999999999887 78888888876532 24666666664211
Q ss_pred CchhHHHHHHHHhhhcccCCCccccCCccccccCCCCH---HHHHHHHHhhc-CCCcEEEEEeCChhHHHHHHHHHHhh
Q 002259 857 GDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNW---KKVLSKLSSKH-CNARIGVFYCGAPVLAKELSKLCYEF 931 (946)
Q Consensus 857 ~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~---~~v~~~~~~~~-~~~~v~V~~CGP~~l~~~vr~~~~~~ 931 (946)
.. ...||.+- +..+.+..... ......||+|||++|++.+++.+.+.
T Consensus 178 -~~---------------------------~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 178 -PG---------------------------SLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred -CC---------------------------CcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence 00 00123220 00111111111 11335699999999999999999763
No 39
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.90 E-value=1.6e-22 Score=218.58 Aligned_cols=209 Identities=23% Similarity=0.381 Sum_probs=152.8
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEcCCchHHHHHHHhh
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSE 701 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~G~~T~~L~~~~~~ 701 (946)
..++|++++.+++++.++++..|..+.|+||||+.|.+|......+|||||++.| ++.+.|+||..|.+|+.|.++
T Consensus 5 ~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~l--- 80 (250)
T PRK00054 5 ENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSKL--- 80 (250)
T ss_pred eEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhcC---
Confidence 4577889999999999999998777889999999999997766679999999998 889999999999999877543
Q ss_pred cCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccc
Q 002259 702 ACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSD 781 (946)
Q Consensus 702 ~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~ 781 (946)
.+| .++.|.||||.....-...+++||||||+||||++|+++++...
T Consensus 81 -----~~G---------------~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~------------- 127 (250)
T PRK00054 81 -----KEG---------------DELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK------------- 127 (250)
T ss_pred -----CCC---------------CEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc-------------
Confidence 133 68999999998432223668999999999999999999988642
Q ss_pred cccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhH
Q 002259 782 FSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARS 861 (946)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~ 861 (946)
.++++++|.+|+.+++ ++.++|.+++ .+ +++.. ++.
T Consensus 128 ----------------------------~~~v~l~~~~r~~~d~-~~~~el~~~~------~~----~~~~~--~~~--- 163 (250)
T PRK00054 128 ----------------------------GVEVTTVLGARTKDEV-IFEEEFAKVG------DV----YVTTD--DGS--- 163 (250)
T ss_pred ----------------------------CCcEEEEEEcCCHHHh-hhHHHHHhcC------CE----EEEec--CCC---
Confidence 2468999999999886 5666665522 11 22211 000
Q ss_pred HHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEE
Q 002259 862 ALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEF 941 (946)
Q Consensus 862 ~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~f 941 (946)
.+. +....+++.+.. . ....||+|||+.|++.+++.+++.+ . +..+
T Consensus 164 -------------------~~~-------~g~v~~~l~~~~---~-~~~~vyvCGp~~m~~~v~~~l~~~G---v-~~~~ 209 (250)
T PRK00054 164 -------------------YGF-------KGFVTDVLDELD---S-EYDAIYSCGPEIMMKKVVEILKEKK---V-PAYV 209 (250)
T ss_pred -------------------CCc-------ccchhHhHhhhc---c-CCCEEEEeCCHHHHHHHHHHHHHcC---C-cEEE
Confidence 000 011223333322 1 1236999999999999999998843 2 4556
Q ss_pred Eeec
Q 002259 942 HKEH 945 (946)
Q Consensus 942 h~E~ 945 (946)
..|.
T Consensus 210 ~~e~ 213 (250)
T PRK00054 210 SLER 213 (250)
T ss_pred EEcc
Confidence 5554
No 40
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.90 E-value=1.4e-22 Score=218.50 Aligned_cols=209 Identities=21% Similarity=0.341 Sum_probs=152.0
Q ss_pred EEEEEecCCEEEEEEECCC-CCccCCCcEEEEEcCC-CCCCccccceeccCC-CCCeEEEEEEEcCCchHHHHHHHhhcC
Q 002259 627 LKVAIYPGNVLTLQMSRPP-QFRYKSGQYMFVQCPA-VSPFEWHPFSITSAP-GDDYLSVHIRQLGDWTQELKRVFSEAC 703 (946)
Q Consensus 627 ~~v~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~-~s~~e~HPFTIas~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~~ 703 (946)
.+++.+++++.+|+++.|. ...|+||||+.|++|. ...+.+|||||+|.| +++.++|+||..|.+|..|.++
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l----- 76 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSEL----- 76 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcC-----
Confidence 4677889999999999887 6789999999999986 345688999999988 4789999999999999877543
Q ss_pred CCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccc
Q 002259 704 EPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFS 783 (946)
Q Consensus 704 ~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~ 783 (946)
.+| .++.|.||||.........+++||||||+||||++|+++++...
T Consensus 77 ---~~G---------------d~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--------------- 123 (246)
T cd06218 77 ---KAG---------------DELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--------------- 123 (246)
T ss_pred ---CCC---------------CEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc---------------
Confidence 133 78999999997442223578999999999999999999987642
Q ss_pred cCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHH
Q 002259 784 RRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSAL 863 (946)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~ 863 (946)
.++++|+|.+|+.+++ .+.++|+++.. ++ +++.. ++.
T Consensus 124 --------------------------~~~v~l~~~~r~~~d~-~~~~eL~~l~~-------~~--~~~~~--~~~----- 160 (246)
T cd06218 124 --------------------------GIKVTVLLGFRSADDL-FLVEEFEALGA-------EV--YVATD--DGS----- 160 (246)
T ss_pred --------------------------CCceEEEEEccchhhh-hhHHHHHhhCC-------cE--EEEcC--CCC-----
Confidence 2578999999999985 66666665531 12 22211 000
Q ss_pred HHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEe
Q 002259 864 ITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHK 943 (946)
Q Consensus 864 ~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~ 943 (946)
.+ .+..+.+.+.+..... ....||+|||++|++++++.+++.+ ....++-
T Consensus 161 -----------------~~-------~~g~v~~~l~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~~G----v~~~~~~ 210 (246)
T cd06218 161 -----------------AG-------TKGFVTDLLKELLAEA--RPDVVYACGPEPMLKAVAELAAERG----VPCQVSL 210 (246)
T ss_pred -----------------CC-------cceehHHHHHHHhhcc--CCCEEEEECCHHHHHHHHHHHHhcC----CCEEEEe
Confidence 00 0112334444433221 2458999999999999999998753 3355666
Q ss_pred ecC
Q 002259 944 EHF 946 (946)
Q Consensus 944 E~F 946 (946)
|++
T Consensus 211 ~~~ 213 (246)
T cd06218 211 EER 213 (246)
T ss_pred ccc
Confidence 654
No 41
>PRK05713 hypothetical protein; Provisional
Probab=99.90 E-value=1e-22 Score=227.17 Aligned_cols=212 Identities=19% Similarity=0.346 Sum_probs=157.3
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEE--cCCchHHHHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQ--LGDWTQELKRV 698 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~--~G~~T~~L~~~ 698 (946)
..++|++++.+++++.+|+++.+..+.|+||||+.|.++. -.+|||||+|.|. ++.++|+||. .|.+|..|.++
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~l 168 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQL 168 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCCCCeEEEEEEEcCCCccchhhhcC
Confidence 4678899999999999999987777899999999999864 2579999999986 5789999985 47788876432
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCC-CCCC-CCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhc
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPA-QDYR-NYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQA 776 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~-~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~ 776 (946)
.+| ..|.|.||+|... .+.. ..+++||||||+||||++|++++++...
T Consensus 169 --------~~G---------------d~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~------- 218 (312)
T PRK05713 169 --------QVG---------------DLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG------- 218 (312)
T ss_pred --------CCC---------------CEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-------
Confidence 234 7899999998532 1212 4578999999999999999999987541
Q ss_pred ccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCC
Q 002259 777 DSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEE 856 (946)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~ 856 (946)
..++++|+|++|+.+++ +|.++|+++++... ++.++..++..
T Consensus 219 --------------------------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~--~~~~~~~~~~~--- 260 (312)
T PRK05713 219 --------------------------------HQGPIRLLHLARDSAGH-YLAEPLAALAGRHP--QLSVELVTAAQ--- 260 (312)
T ss_pred --------------------------------CCCcEEEEEEcCchHHh-hhHHHHHHHHHHCC--CcEEEEEECcc---
Confidence 13679999999999997 78888888876443 35555433210
Q ss_pred CchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCC
Q 002259 857 GDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGS 936 (946)
Q Consensus 857 ~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~ 936 (946)
. .+++.+... . .....||+|||++|++.+++.+.+ .|.
T Consensus 261 --~-----------------------------------~~~l~~~~~-~-~~~~~vyiCGp~~mv~~~~~~L~~---~Gv 298 (312)
T PRK05713 261 --L-----------------------------------PAALAELRL-V-SRQTMALLCGSPASVERFARRLYL---AGL 298 (312)
T ss_pred --h-----------------------------------hhhhhhccC-C-CCCeEEEEeCCHHHHHHHHHHHHH---cCC
Confidence 0 011111110 0 123579999999999999999977 355
Q ss_pred ccEEEEeecC
Q 002259 937 TKFEFHKEHF 946 (946)
Q Consensus 937 ~~~~fh~E~F 946 (946)
+.-.+|.|.|
T Consensus 299 ~~~~i~~e~F 308 (312)
T PRK05713 299 PRNQLLADVF 308 (312)
T ss_pred CHHHeeeccc
Confidence 6667888877
No 42
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.89 E-value=4e-22 Score=209.89 Aligned_cols=202 Identities=17% Similarity=0.262 Sum_probs=150.5
Q ss_pred EEEEecCCEEEEEEECCCCC---ccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEcCC---chHHHHHHHh
Q 002259 628 KVAIYPGNVLTLQMSRPPQF---RYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQLGD---WTQELKRVFS 700 (946)
Q Consensus 628 ~v~~~~~~v~~l~l~~p~~~---~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~G~---~T~~L~~~~~ 700 (946)
+++.+++++++++++.|... .|+||||+.|++|. ...|||||++.|.+ +.+.|+||..++ .|..|.+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~~ 78 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELLR 78 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcCC
Confidence 45678899999999988753 89999999999986 36799999999875 889999998752 6777654321
Q ss_pred hcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccccc
Q 002259 701 EACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVS 780 (946)
Q Consensus 701 ~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 780 (946)
+| ..+.|.||||.+... ...+++||||||+||||++++++++...
T Consensus 79 -------~G---------------d~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~------------ 123 (211)
T cd06185 79 -------VG---------------DELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR------------ 123 (211)
T ss_pred -------CC---------------CEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC------------
Confidence 23 789999999987542 3457899999999999999999987542
Q ss_pred ccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchh
Q 002259 781 DFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDAR 860 (946)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~ 860 (946)
.++++++|.+|+.+++ .+.+.|++++ . ..+ +++.+..
T Consensus 124 -----------------------------~~~v~l~~~~r~~~~~-~~~~~l~~~~---~-~~~--~~~~~~~------- 160 (211)
T cd06185 124 -----------------------------GADFELHYAGRSREDA-AFLDELAALP---G-DRV--HLHFDDE------- 160 (211)
T ss_pred -----------------------------CCCEEEEEEeCCCcch-hHHHHHhhhc---C-CcE--EEEECCC-------
Confidence 2568999999999886 4556665554 1 223 3333211
Q ss_pred HHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEE
Q 002259 861 SALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFE 940 (946)
Q Consensus 861 ~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~ 940 (946)
.+|++..+++... . ....||+|||+.|++++++.+.+. |...-.
T Consensus 161 ----------------------------~~~~~~~~~~~~~----~-~~~~vyicGp~~m~~~~~~~l~~~---gv~~~~ 204 (211)
T cd06185 161 ----------------------------GGRLDLAALLAAP----P-AGTHVYVCGPEGMMDAVRAAAAAL---GWPEAR 204 (211)
T ss_pred ----------------------------CCccCHHHHhccC----C-CCCEEEEECCHHHHHHHHHHHHHc---CCChhh
Confidence 0355666655432 1 235799999999999999999884 455667
Q ss_pred EEeecC
Q 002259 941 FHKEHF 946 (946)
Q Consensus 941 fh~E~F 946 (946)
+|.|.|
T Consensus 205 i~~e~F 210 (211)
T cd06185 205 LHFERF 210 (211)
T ss_pred eEeeec
Confidence 888887
No 43
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.89 E-value=1.3e-21 Score=217.59 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=154.5
Q ss_pred eeEEEEEEEEec-----CCEEEEEEECCCCCccCCCcEEEEEcCCCC------CCccccceeccCCCC-----CeEEEEE
Q 002259 622 STVRLLKVAIYP-----GNVLTLQMSRPPQFRYKSGQYMFVQCPAVS------PFEWHPFSITSAPGD-----DYLSVHI 685 (946)
Q Consensus 622 ~~~~i~~v~~~~-----~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s------~~e~HPFTIas~p~~-----~~l~l~I 685 (946)
+.++|++++.+. +++.+|++..+..+.|+||||+.|.+|+.. ...+++|||+|.|.+ ..++|+|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 467788898887 899999999988899999999999887431 124799999999842 2799999
Q ss_pred EEc---------------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCC-CC-CCCCEEEE
Q 002259 686 RQL---------------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQ-DY-RNYDVLLL 748 (946)
Q Consensus 686 r~~---------------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~-~~-~~~~~vvl 748 (946)
|.. |-.|..|.++ . .| ..|.|.||+|.+.. +. ...+++||
T Consensus 105 r~~~~~~~~~~~~~~~~~G~~S~~L~~l-~-------~G---------------d~v~v~gP~G~f~~~~~~~~~~~~vl 161 (307)
T PLN03116 105 RRAVYYDPETGKEDPAKKGVCSNFLCDA-K-------PG---------------DKVQITGPSGKVMLLPEEDPNATHIM 161 (307)
T ss_pred EEEEEecCCcCCCCCccCcchhhhHhhC-C-------CC---------------CEEEEEEecCCceeCCCCCCCCcEEE
Confidence 864 5677777652 1 33 78999999999753 21 34568999
Q ss_pred EEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhH
Q 002259 749 VGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWF 828 (946)
Q Consensus 749 IagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf 828 (946)
||||+||||++|++++++..... ......+++|+|++|+.+++ .|
T Consensus 162 IAgGtGIaP~~sml~~~l~~~~~----------------------------------~~~~~~~v~L~~g~R~~~d~-~~ 206 (307)
T PLN03116 162 VATGTGIAPFRGFLRRMFMEDVP----------------------------------AFKFGGLAWLFLGVANSDSL-LY 206 (307)
T ss_pred EecCccHHHHHHHHHHHHhhccc----------------------------------cccCCCcEEEEEecCCcccc-hH
Confidence 99999999999999988754210 00013578999999999886 67
Q ss_pred HHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhh---c
Q 002259 829 KGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSK---H 905 (946)
Q Consensus 829 ~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~---~ 905 (946)
.++|.++++... ..+.++..+++..+... | ++-...+.+.+..+. .
T Consensus 207 ~deL~~l~~~~~-~~~~~~~~~sr~~~~~~-----------------------g-------~~g~v~~~l~~~~~~~~~~ 255 (307)
T PLN03116 207 DDEFERYLKDYP-DNFRYDYALSREQKNKK-----------------------G-------GKMYVQDKIEEYSDEIFKL 255 (307)
T ss_pred HHHHHHHHHhCC-CcEEEEEEEccCCcccC-----------------------C-------CccchhhHHHHHHHHHHhh
Confidence 888888876542 24677666664321100 0 011112222221110 0
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 906 CNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 906 ~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
......||+|||++|++.+++++.+..
T Consensus 256 ~~~~~~vYiCGp~~mv~~v~~~L~~~~ 282 (307)
T PLN03116 256 LDNGAHIYFCGLKGMMPGIQDTLKRVA 282 (307)
T ss_pred hcCCcEEEEeCCHHHHHHHHHHHHHHH
Confidence 112357999999999999988887753
No 44
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.89 E-value=5.9e-22 Score=213.31 Aligned_cols=144 Identities=21% Similarity=0.314 Sum_probs=118.0
Q ss_pred EEEEEecCCEEEEEEECCC-CCccCCCcEEEEEcCCCCCCccccceeccCC-CCCeEEEEEEEcCCchHHHHHHHhhcCC
Q 002259 627 LKVAIYPGNVLTLQMSRPP-QFRYKSGQYMFVQCPAVSPFEWHPFSITSAP-GDDYLSVHIRQLGDWTQELKRVFSEACE 704 (946)
Q Consensus 627 ~~v~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~~~ 704 (946)
++++.+++++.+++++.|. .+.|+||||++|.+|......+|||||+|.| ++++++|+||..|..|+.|.++
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~------ 75 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAEL------ 75 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhC------
Confidence 4667888999999999875 4679999999999975445688999999997 4689999999999999887643
Q ss_pred CCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccccccccc
Q 002259 705 PPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSR 784 (946)
Q Consensus 705 ~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~ 784 (946)
.+| ..+.|.||||.+.......+++||||||+||||++++++++..+
T Consensus 76 --~~G---------------~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~---------------- 122 (243)
T cd06192 76 --KPG---------------EKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN---------------- 122 (243)
T ss_pred --CCC---------------CEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC----------------
Confidence 134 68999999998754333478999999999999999999988642
Q ss_pred CCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHH
Q 002259 785 RSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEV 835 (946)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el 835 (946)
.++++++|.+|+.+++ ++.++|.++
T Consensus 123 -------------------------~~~v~l~~~~r~~~d~-~~~~el~~~ 147 (243)
T cd06192 123 -------------------------GNKVTVLAGAKKAKEE-FLDEYFELP 147 (243)
T ss_pred -------------------------CCeEEEEEecCcHHHH-HHHHHHHhh
Confidence 2579999999999986 666666554
No 45
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.89 E-value=8e-22 Score=210.90 Aligned_cols=200 Identities=22% Similarity=0.350 Sum_probs=147.2
Q ss_pred EEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEcCCchHHHHHHHhhcC
Q 002259 624 VRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEAC 703 (946)
Q Consensus 624 ~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~G~~T~~L~~~~~~~~ 703 (946)
++|++++.+++++.+++++.| +.|+||||+.|.+|.. ..|||||+|.| +.++|+||..|.+|++|.++
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~l----- 68 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHDL----- 68 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHhc-----
Confidence 357888999999999999875 5899999999999864 35999999998 78999999999999999763
Q ss_pred CCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccc
Q 002259 704 EPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFS 783 (946)
Q Consensus 704 ~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~ 783 (946)
.+| +.+.|.||||.+.. .. ++++|+||||+||||++|++++++.+
T Consensus 69 ---~~G---------------d~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~--------------- 113 (233)
T cd06220 69 ---KEG---------------DKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA--------------- 113 (233)
T ss_pred ---CCC---------------CEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc---------------
Confidence 134 78999999998432 22 68999999999999999999987532
Q ss_pred cCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHH
Q 002259 784 RRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSAL 863 (946)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~ 863 (946)
++++|+|.+|+.+++ .+.++|++ . ..+ + +.+.. . .
T Consensus 114 ---------------------------~~i~l~~~~r~~~d~-~~~~eL~~---~---~~~--~-~~~~~-~--~----- 148 (233)
T cd06220 114 ---------------------------ADVTVLLGARTKEEL-LFLDRLRK---S---DEL--I-VTTDD-G--S----- 148 (233)
T ss_pred ---------------------------CCEEEEEecCChHHC-hhHHHHhh---C---CcE--E-EEEeC-C--C-----
Confidence 568999999999886 45555554 1 111 1 12211 0 0
Q ss_pred HHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEe
Q 002259 864 ITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHK 943 (946)
Q Consensus 864 ~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~ 943 (946)
.+ ..|+. .+++.+... .....||+|||+.|++.+++.+.+.+ . ...+|.
T Consensus 149 -----------------~~-----~~g~~--~~~l~~~~~---~~~~~vyicGp~~m~~~~~~~L~~~g---~-~~~i~~ 197 (233)
T cd06220 149 -----------------YG-----FKGFV--TDLLKELDL---EEYDAIYVCGPEIMMYKVLEILDERG---V-RAQFSL 197 (233)
T ss_pred -----------------Cc-----cccee--hHHHhhhcc---cCCCEEEEECCHHHHHHHHHHHHhcC---C-cEEEEe
Confidence 00 00222 234443321 12236999999999999999998753 2 677888
Q ss_pred ecC
Q 002259 944 EHF 946 (946)
Q Consensus 944 E~F 946 (946)
|.|
T Consensus 198 e~f 200 (233)
T cd06220 198 ERY 200 (233)
T ss_pred ccc
Confidence 876
No 46
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.89 E-value=6.5e-22 Score=228.47 Aligned_cols=230 Identities=16% Similarity=0.308 Sum_probs=164.2
Q ss_pred eeEEEEEEEEecCCEEEEEEECC--CCCccCCCcEEEEEcCCC-----------------------------CCCccccc
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRP--PQFRYKSGQYMFVQCPAV-----------------------------SPFEWHPF 670 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p--~~~~~~pGQ~v~l~~p~~-----------------------------s~~e~HPF 670 (946)
+.++|++++.+++++.++++..| ..+.|+||||+.|++|.. .....+||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 46788888999999999999887 357899999999999842 12356899
Q ss_pred eeccCCCC-CeEEEEEEE-----------cCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCC
Q 002259 671 SITSAPGD-DYLSVHIRQ-----------LGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQ 738 (946)
Q Consensus 671 TIas~p~~-~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~ 738 (946)
||+|.|.+ +.++|+||. .|..|..|.++ .+| ..+.|.||+|.+..
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l--------~~G---------------d~v~v~gP~G~f~~ 270 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSL--------KPG---------------DKVTISGPFGEFFA 270 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhC--------CCC---------------CEEEEEccccCcEe
Confidence 99999964 589999996 37788888753 234 78999999999864
Q ss_pred CCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEE
Q 002259 739 DYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWV 818 (946)
Q Consensus 739 ~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv 818 (946)
. ...+++||||||+||||++|++++++.... ..++++|+|.
T Consensus 271 ~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~--------------------------------------~~~~v~L~~g 311 (409)
T PRK05464 271 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK--------------------------------------SKRKISFWYG 311 (409)
T ss_pred c-CCCceEEEEEeccChhHHHHHHHHHHhCCC--------------------------------------CCceEEEEEe
Confidence 3 456799999999999999999998875421 1368999999
Q ss_pred eCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHH
Q 002259 819 TREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVL 898 (946)
Q Consensus 819 ~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~ 898 (946)
+|+.+++ .+.++++++++... ++.++..+++..+ .+. ..| +.|+.+ +.+.
T Consensus 312 ~r~~~d~-~~~~el~~l~~~~~--~~~~~~~~s~~~~-~~~--------------------~~g-----~~G~v~-~~l~ 361 (409)
T PRK05464 312 ARSLREM-FYVEDFDQLAAENP--NFKWHVALSDPLP-EDN--------------------WTG-----YTGFIH-NVLY 361 (409)
T ss_pred cCCHHHh-hHHHHHHHHHHhCC--CeEEEEEEcCCCC-CCC--------------------CCC-----ccceeC-HHHH
Confidence 9999886 66777777765432 4666655543211 110 011 012222 1222
Q ss_pred HHHHhhc-CCCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEeecC
Q 002259 899 SKLSSKH-CNARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHKEHF 946 (946)
Q Consensus 899 ~~~~~~~-~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~E~F 946 (946)
+.....+ ...+..||+|||+.|++.+++.+.+. |.+.-.+|.|.|
T Consensus 362 ~~~l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~---Gv~~~~I~~E~F 407 (409)
T PRK05464 362 ENYLKDHEAPEDCEYYMCGPPMMNAAVIKMLKDL---GVEDENILLDDF 407 (409)
T ss_pred HhhhhhcCCCCCeEEEEECCHHHHHHHHHHHHHc---CCCHHHEEEccc
Confidence 2222211 12346799999999999999999874 455667888887
No 47
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.89 E-value=9.6e-22 Score=213.86 Aligned_cols=206 Identities=21% Similarity=0.287 Sum_probs=149.4
Q ss_pred eEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEcCCchHHHHHHHhhc
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEA 702 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~G~~T~~L~~~~~~~ 702 (946)
+++|++++.+++++.++++..| +.|+||||+.|++|... .|||||++.+ ++.++|+||..|..|..|.++
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~l---- 78 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFNL---- 78 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHhC----
Confidence 5678899999999999999875 47999999999998643 3999999876 678999999999999988653
Q ss_pred CCCCCCCCCCcccccccccCCCCEEEEeCccCC-CCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccc
Q 002259 703 CEPPVAGKSGLLRADETTKKSLPKLLIDGPYGA-PAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSD 781 (946)
Q Consensus 703 ~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~-~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~ 781 (946)
.+| ..+.|.||||. +..+....+++||||||+||||++|++++++.+..
T Consensus 79 ----~~G---------------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~----------- 128 (263)
T PRK08221 79 ----KEG---------------DKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ----------- 128 (263)
T ss_pred ----CCC---------------CEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc-----------
Confidence 134 78999999998 43333345799999999999999999999875311
Q ss_pred cccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhH
Q 002259 782 FSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARS 861 (946)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~ 861 (946)
..++++|+|++|+.+++ .+.++|.++++. ..+++.+++.. +.
T Consensus 129 ---------------------------~~~~v~L~~g~r~~~~l-~~~~el~~~~~~-----~~~~~~~~~~~---~~-- 170 (263)
T PRK08221 129 ---------------------------EIKSLDLILGFKNPDDI-LFKEDLKRWREK-----INLILTLDEGE---EG-- 170 (263)
T ss_pred ---------------------------cCceEEEEEecCCHHHh-hHHHHHHHHhhc-----CcEEEEecCCC---CC--
Confidence 13589999999999987 677777777652 12222222110 00
Q ss_pred HHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 862 ALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 862 ~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
.. -+.||.+ +.+.+.... ...+..||+||||.|++++++.+++.+
T Consensus 171 ------------------~~-----~~~G~v~--~~l~~~~~~-~~~~~~vylCGp~~mv~~~~~~L~~~G 215 (263)
T PRK08221 171 ------------------YR-----GNVGLVT--KYIPELTLK-DIDNMQVIVVGPPIMMKFTVLEFLKRG 215 (263)
T ss_pred ------------------Cc-----cCccccC--hhhHhccCC-CcCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 00 1224554 223222111 113467999999999999999998753
No 48
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.89 E-value=1.2e-21 Score=211.59 Aligned_cols=144 Identities=23% Similarity=0.381 Sum_probs=117.8
Q ss_pred EEEEEEEecCCEEEEEEECCCC-CccCCCcEEEEEcCCCCCCccccceeccCC-CCCeEEEEEEEcCCchHHHHHHHhhc
Q 002259 625 RLLKVAIYPGNVLTLQMSRPPQ-FRYKSGQYMFVQCPAVSPFEWHPFSITSAP-GDDYLSVHIRQLGDWTQELKRVFSEA 702 (946)
Q Consensus 625 ~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~ 702 (946)
+|++++.++++++.++++.|.. ..|+||||+.|+++.. .++|||||+|.| +++.++|+||..|..|..|.++
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l---- 75 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDPEKGTITIVVQVVGKSTRELATL---- 75 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhc----
Confidence 5678888999999999998753 5799999999998643 367999999986 4678999999999999877543
Q ss_pred CCCCCCCCCCcccccccccCCCCEE-EEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccc
Q 002259 703 CEPPVAGKSGLLRADETTKKSLPKL-LIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSD 781 (946)
Q Consensus 703 ~~~~~~G~~~~~~~~~~~~~~~~~v-~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~ 781 (946)
..| ..+ .|+||||.+.. ...++++||||||+||||++|+++++...
T Consensus 76 ----~~G---------------~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~------------- 122 (248)
T cd06219 76 ----EEG---------------DKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEA------------- 122 (248)
T ss_pred ----CCC---------------CEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHc-------------
Confidence 123 678 69999999753 34568999999999999999999987642
Q ss_pred cccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHH
Q 002259 782 FSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVA 836 (946)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~ 836 (946)
.++++|+|.+|+.+++ +|.++|.+++
T Consensus 123 ----------------------------~~~v~l~~~~r~~~~~-~~~~el~~l~ 148 (248)
T cd06219 123 ----------------------------GNRVITIIGARTKDLV-ILEDEFRAVS 148 (248)
T ss_pred ----------------------------CCeEEEEEEcCCHHHh-hhHHHHHhhc
Confidence 2579999999999987 6777777664
No 49
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.89 E-value=3.2e-21 Score=208.25 Aligned_cols=221 Identities=23% Similarity=0.354 Sum_probs=170.1
Q ss_pred eeeEEEEEEEEecCCEEEEEEECCCCCc--cCCCcEEEEEcCCCCCCccccceeccCCCCC-eEEEEEEEc--CCchHHH
Q 002259 621 FSTVRLLKVAIYPGNVLTLQMSRPPQFR--YKSGQYMFVQCPAVSPFEWHPFSITSAPGDD-YLSVHIRQL--GDWTQEL 695 (946)
Q Consensus 621 ~~~~~i~~v~~~~~~v~~l~l~~p~~~~--~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~-~l~l~Ir~~--G~~T~~L 695 (946)
+..++|++++..+++++.+++..|.+.. |+||||+.|.++..+...++.|||+|+|.++ .+.|.||.. |..|+.|
T Consensus 5 ~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~L 84 (266)
T COG1018 5 FRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNWL 84 (266)
T ss_pred eEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHHH
Confidence 4577899999999999999999998774 9999999999998776789999999999875 899999987 7899999
Q ss_pred HHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhh
Q 002259 696 KRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQ 775 (946)
Q Consensus 696 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~ 775 (946)
++.++ +| +.|.|.+|.|.+..+....++++||||||||||++||++++....
T Consensus 85 h~~lk-------~G---------------d~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------ 136 (266)
T COG1018 85 HDHLK-------VG---------------DTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------ 136 (266)
T ss_pred HhcCC-------CC---------------CEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------
Confidence 86543 34 789999999999866655568999999999999999999987641
Q ss_pred cccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccC
Q 002259 776 ADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYE 855 (946)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~ 855 (946)
. .+|.|++++|+.+++ -|+++ ++++.... ....++.|+..
T Consensus 137 ---------------------------------~-~~v~l~h~~R~~~~~-af~de-~~l~~~~~-~~~~~~~~~~~--- 176 (266)
T COG1018 137 ---------------------------------P-ADVVLVHAARTPADL-AFRDE-LELAAELP-NALLLGLYTER--- 176 (266)
T ss_pred ---------------------------------C-CCEEEEEecCChhhc-chhhH-HHHHhhCC-CCeeEEEEEec---
Confidence 2 679999999999997 56665 55554332 23444444320
Q ss_pred CCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcCC
Q 002259 856 EGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQKG 935 (946)
Q Consensus 856 ~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~~ 935 (946)
++ .-||++...+.. ..+.....+|+|||.+|++.++..+.+.+
T Consensus 177 -~~-----------------------------~~g~~~~~~l~~----~~~~~~r~~y~CGp~~fm~av~~~l~~~g--- 219 (266)
T COG1018 177 -GK-----------------------------LQGRIDVSRLLS----AAPDGGREVYLCGPGPFMQAVRLALEALG--- 219 (266)
T ss_pred -CC-----------------------------ccccccHHHHhc----cCCCCCCEEEEECCHHHHHHHHHHHHHcC---
Confidence 00 114566544322 22222267999999999999999998854
Q ss_pred CccEEEEeecC
Q 002259 936 STKFEFHKEHF 946 (946)
Q Consensus 936 ~~~~~fh~E~F 946 (946)
...-.+|.|.|
T Consensus 220 ~~~~~vh~E~F 230 (266)
T COG1018 220 VPDDRVHLEGF 230 (266)
T ss_pred CChhcEEEeec
Confidence 34557888877
No 50
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.89 E-value=2.9e-21 Score=212.77 Aligned_cols=222 Identities=16% Similarity=0.258 Sum_probs=155.4
Q ss_pred eeEEEEEEEEec-----CCEEEEEEECCCCCccCCCcEEEEEcCCCC-----CCccccceeccCCCC-----CeEEEEEE
Q 002259 622 STVRLLKVAIYP-----GNVLTLQMSRPPQFRYKSGQYMFVQCPAVS-----PFEWHPFSITSAPGD-----DYLSVHIR 686 (946)
Q Consensus 622 ~~~~i~~v~~~~-----~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s-----~~e~HPFTIas~p~~-----~~l~l~Ir 686 (946)
+.++|++++.+. +++.++++..+..+.|+|||||.|.+|... ....|||||+|.|.+ +.++|+||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 356788888887 689999999877889999999999887432 124799999998843 58999999
Q ss_pred Ec------------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCC-CCCCCEEEEEEcCC
Q 002259 687 QL------------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQD-YRNYDVLLLVGLGI 753 (946)
Q Consensus 687 ~~------------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~-~~~~~~vvlIagGi 753 (946)
.. |..|..|.++ .+| ..|.|.||+|.+... ....+++||||||+
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~l--------~~G---------------d~v~v~gP~G~~~~~~~~~~~~~vlIagGt 145 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCDL--------KPG---------------DDVQITGPVGKTMLLPEDPNATLIMIATGT 145 (286)
T ss_pred EEEEecCCCCceeccchHHHHhhC--------CCC---------------CEEEEEeecCCcccCCCCCCCCEEEEecCc
Confidence 87 6678877763 134 789999999987532 22346899999999
Q ss_pred CHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHH
Q 002259 754 GATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMN 833 (946)
Q Consensus 754 GITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~ 833 (946)
||||++|++++++.+.... ....+++.|+|++|+.+++ .+.+.|+
T Consensus 146 GIaP~~s~l~~~~~~~~~~----------------------------------~~~~~~v~L~~g~r~~~d~-~~~~el~ 190 (286)
T cd06208 146 GIAPFRSFLRRLFREKHAD----------------------------------YKFTGLAWLFFGVPNSDSL-LYDDELE 190 (286)
T ss_pred cHHHHHHHHHHHHHhhhcc----------------------------------cCCCCCEEEEEEecCccch-hHHHHHH
Confidence 9999999999987652110 0113679999999999986 6778888
Q ss_pred HHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHH----HHhhcCCCc
Q 002259 834 EVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSK----LSSKHCNAR 909 (946)
Q Consensus 834 el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~----~~~~~~~~~ 909 (946)
++++... ..++++..+++...... |.. |+ +.+.+.+ +........
T Consensus 191 ~l~~~~~-~~~~~~~~~sr~~~~~~-----------------------g~~-----g~--v~~~i~~~~~~l~~~l~~~~ 239 (286)
T cd06208 191 KYPKQYP-DNFRIDYAFSREQKNAD-----------------------GGK-----MY--VQDRIAEYAEEIWNLLDKDN 239 (286)
T ss_pred HHHHhCC-CcEEEEEEEcCCCCCCC-----------------------CCc-----ee--hhhHHHHhHHHHHHHHhcCC
Confidence 8776432 24777766664311100 000 00 1122211 110111233
Q ss_pred EEEEEeCChhHHHHHHHHHHhhh
Q 002259 910 IGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 910 v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
..||+|||++|++.+++.+.++.
T Consensus 240 ~~vYiCGp~~m~~~v~~~L~~~~ 262 (286)
T cd06208 240 THVYICGLKGMEPGVDDALTSVA 262 (286)
T ss_pred cEEEEeCCchHHHHHHHHHHHHH
Confidence 56999999999999999998854
No 51
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.89 E-value=1.7e-21 Score=216.69 Aligned_cols=224 Identities=13% Similarity=0.167 Sum_probs=159.2
Q ss_pred eeeeeEEEEEEEEecCCEEEEEEECCC--CCccCCCcEEEEEcCCC---CCCccccceeccCCC-CCeEEEEEEEc--CC
Q 002259 619 SGFSTVRLLKVAIYPGNVLTLQMSRPP--QFRYKSGQYMFVQCPAV---SPFEWHPFSITSAPG-DDYLSVHIRQL--GD 690 (946)
Q Consensus 619 ~~~~~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~---s~~e~HPFTIas~p~-~~~l~l~Ir~~--G~ 690 (946)
.++..++|.+++.+++++.+++|..|. .+.++||||+.+.++.. ....++||||+|.|+ +++++|+||.. |.
T Consensus 50 ~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G~ 129 (325)
T PTZ00274 50 QRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGL 129 (325)
T ss_pred CceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCCc
Confidence 456788999999999999999998764 68899999999887632 123579999999996 57899999995 66
Q ss_pred chHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHh
Q 002259 691 WTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIV 770 (946)
Q Consensus 691 ~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~ 770 (946)
+|..|.++ .+| +.|.|.||+|....+....+++|||||||||||++|++++++.+..
T Consensus 130 ~S~~L~~l--------k~G---------------d~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~ 186 (325)
T PTZ00274 130 MTNHLFGM--------HVG---------------DKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPW 186 (325)
T ss_pred ccHHHhcC--------CCC---------------CEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhccc
Confidence 79888753 234 7899999988764333345789999999999999999999886521
Q ss_pred hhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEE
Q 002259 771 KQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYL 850 (946)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yv 850 (946)
.. .....++|+|+|++|+.+++ .|+++|+++++...+ .++++..+
T Consensus 187 ~~---------------------------------~~~~~~~v~Llyg~R~~~di-~~~~eL~~La~~~~~-~f~v~~~l 231 (325)
T PTZ00274 187 DS---------------------------------GEVDRTKLSFLFCNRTERHI-LLKGLFDDLARRYSN-RFKVYYTI 231 (325)
T ss_pred cc---------------------------------ccCCCCeEEEEEEcCCHHHh-hHHHHHHHHHHhCCC-cEEEEEEe
Confidence 10 01123589999999999997 788889888765432 57776666
Q ss_pred ecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHH
Q 002259 851 TSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKL 927 (946)
Q Consensus 851 T~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~ 927 (946)
++..+..+ .. .+.||.+- +++.+........+..||+|||++|++.+...
T Consensus 232 s~~~~~~~---------------------w~-----g~~G~V~~-~ll~~~~~~~~~~~~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 232 DQAVEPDK---------------------WN-----HFLGYVTK-EMVRRTMPAPEEKKKIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred CCCCcccC---------------------CC-----CCCCccCH-HHHHHhcCCCccCCcEEEEeCCHHHHHHhcCC
Confidence 53211100 01 12356553 23343322111123569999999999999654
No 52
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.88 E-value=1.7e-21 Score=224.79 Aligned_cols=230 Identities=16% Similarity=0.311 Sum_probs=163.1
Q ss_pred eeEEEEEEEEecCCEEEEEEECCC--CCccCCCcEEEEEcCCC-----------------------------CCCccccc
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPP--QFRYKSGQYMFVQCPAV-----------------------------SPFEWHPF 670 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~--~~~~~pGQ~v~l~~p~~-----------------------------s~~e~HPF 670 (946)
+.++|++++.+++++.++++..+. ++.|+||||+.|.+|.. ....+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 356788888899999999998763 46899999999999743 11356999
Q ss_pred eeccCCC-CCeEEEEEEEc-----------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCC
Q 002259 671 SITSAPG-DDYLSVHIRQL-----------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQ 738 (946)
Q Consensus 671 TIas~p~-~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~ 738 (946)
||+|.|. ++.++|+||.. |..|..|.++ .+| ..+.|.||||.+..
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l--------~~G---------------d~v~i~gP~G~f~l 266 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSL--------KPG---------------DKVTISGPFGEFFA 266 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcC--------CCc---------------CEEEEEeccCCCee
Confidence 9999996 46899999973 7888888653 234 78999999999864
Q ss_pred CCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEE
Q 002259 739 DYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWV 818 (946)
Q Consensus 739 ~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv 818 (946)
. ...+++||||||+||||++|++++++.+.. ..++++|+|.
T Consensus 267 ~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~--------------------------------------~~~~v~l~~g 307 (405)
T TIGR01941 267 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK--------------------------------------SKRKISFWYG 307 (405)
T ss_pred c-CCCCCEEEEecCcCcchHHHHHHHHHhcCC--------------------------------------CCCeEEEEEe
Confidence 3 355789999999999999999998765311 1367999999
Q ss_pred eCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHH
Q 002259 819 TREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVL 898 (946)
Q Consensus 819 ~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~ 898 (946)
+|+.+++ ++.++++++++... .+.++..+++..+. +. ..|. .|+.. +.+.
T Consensus 308 ~R~~~dl-~~~~el~~l~~~~~--~~~~~~~~s~~~~~-~~--------------------~~g~-----~G~v~-~~l~ 357 (405)
T TIGR01941 308 ARSLREM-FYQEDFDQLEAENP--NFVWHVALSDPQPE-DN--------------------WTGY-----TGFIH-NVLY 357 (405)
T ss_pred cCCHHHH-hHHHHHHHHHHhCC--CeEEEEEeCCCCcc-CC--------------------CCCc-----cceeC-HHHH
Confidence 9999886 67888887765432 46666655532111 10 0111 12221 1112
Q ss_pred HHHHhhcC-CCcEEEEEeCChhHHHHHHHHHHhhhcCCCccEEEEeecC
Q 002259 899 SKLSSKHC-NARIGVFYCGAPVLAKELSKLCYEFNQKGSTKFEFHKEHF 946 (946)
Q Consensus 899 ~~~~~~~~-~~~v~V~~CGP~~l~~~vr~~~~~~~~~~~~~~~fh~E~F 946 (946)
........ ..+..||+|||+.|++.+++.+.+. |.+.-.+|.|.|
T Consensus 358 ~~~l~~~~~~~~~~vylCGP~~m~~av~~~L~~~---Gv~~~~I~~E~F 403 (405)
T TIGR01941 358 ENYLKDHDAPEDCEFYMCGPPMMNAAVIKMLEDL---GVERENILLDDF 403 (405)
T ss_pred HhhhcccCCCCCeEEEEeCCHHHHHHHHHHHHHc---CCCHHHEEEecc
Confidence 22222111 1346799999999999999999884 445566888887
No 53
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.88 E-value=4.1e-21 Score=210.90 Aligned_cols=200 Identities=21% Similarity=0.348 Sum_probs=143.7
Q ss_pred EEEEEEEEecCCEEEEEEECCC-CCccCCCcEEEEEcCCCCCCccccceeccCC-CCCeEEEEEEEcCCchHHHHHHHhh
Q 002259 624 VRLLKVAIYPGNVLTLQMSRPP-QFRYKSGQYMFVQCPAVSPFEWHPFSITSAP-GDDYLSVHIRQLGDWTQELKRVFSE 701 (946)
Q Consensus 624 ~~i~~v~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p-~~~~l~l~Ir~~G~~T~~L~~~~~~ 701 (946)
++|++++.+++++..+++..|. ...++||||+.|+++... ++|||||++.| +++.++|+||..|..|+.|.++
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l--- 76 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQAVGKSTRKLAEL--- 76 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcC---
Confidence 3577888999999999998775 357999999999997532 57999999976 4678999999999999988643
Q ss_pred cCCCCCCCCCCcccccccccCCCCEE-EEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhccccc
Q 002259 702 ACEPPVAGKSGLLRADETTKKSLPKL-LIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVS 780 (946)
Q Consensus 702 ~~~~~~~G~~~~~~~~~~~~~~~~~v-~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~ 780 (946)
.+| ..+ .|.||||.+.. ...++++||||||+||||++++++++..+
T Consensus 77 -----~~G---------------d~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~------------ 123 (281)
T PRK06222 77 -----KEG---------------DSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEA------------ 123 (281)
T ss_pred -----CCC---------------CEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHC------------
Confidence 234 678 69999999763 34467999999999999999999987642
Q ss_pred ccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchh
Q 002259 781 DFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDAR 860 (946)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~ 860 (946)
..+++++|..|+.+++ .+.+++.+++. ++ +++.. |.
T Consensus 124 -----------------------------~~~v~l~~g~r~~~d~-~~~~el~~~~~-------~~--~v~~~----d~- 159 (281)
T PRK06222 124 -----------------------------GNKVITIIGARNKDLL-ILEDEMKAVSD-------EL--YVTTD----DG- 159 (281)
T ss_pred -----------------------------CCeEEEEEecCCHHHh-hcHHHHHhhCC-------eE--EEEcC----CC-
Confidence 2478999999999986 55555554432 11 22211 10
Q ss_pred HHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 861 SALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 861 ~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
..|. .|+ ..+.+.+...... ....||+|||+.|++.+.+.+++.+
T Consensus 160 -------------------~~g~-----~G~--v~~~l~~~~~~~~-~~~~vy~CGP~~M~~~v~~~l~~~g 204 (281)
T PRK06222 160 -------------------SYGR-----KGF--VTDVLKELLESGK-KVDRVVAIGPVIMMKFVAELTKPYG 204 (281)
T ss_pred -------------------CcCc-----ccc--hHHHHHHHhhcCC-CCcEEEEECCHHHHHHHHHHHHhcC
Confidence 0000 011 1234444332211 1246999999999999999998754
No 54
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.88 E-value=3.3e-21 Score=209.42 Aligned_cols=206 Identities=22% Similarity=0.315 Sum_probs=147.1
Q ss_pred eEEEEEEEEecCCEEEEEEECCCCCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEcCCchHHHHHHHhhc
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEA 702 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~G~~T~~L~~~~~~~ 702 (946)
.++|+++...+++++.++++.| +.|+||||+.|.+|.. ..|||||++. +++.++|+||..|+.|..|.++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~l---- 76 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI-GEGYIDLTIRRVGKVTDEVFTL---- 76 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC-CCCeEEEEEEeCchhhHHHHcC----
Confidence 5677888888899999999764 6799999999999864 3599999984 5688999999999999887542
Q ss_pred CCCCCCCCCCcccccccccCCCCEEEEeCccCCCC-CCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccc
Q 002259 703 CEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPA-QDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSD 781 (946)
Q Consensus 703 ~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~-~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~ 781 (946)
.+| ..+.|.||||... .+....+++||||||+||||+++++++++.+..
T Consensus 77 ----~~G---------------d~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~----------- 126 (261)
T TIGR02911 77 ----KEG---------------DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK----------- 126 (261)
T ss_pred ----CCC---------------CEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc-----------
Confidence 134 7899999999843 222356799999999999999999999875321
Q ss_pred cccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhH
Q 002259 782 FSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARS 861 (946)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~ 861 (946)
..++++|+|.+|+.+++ ++.++|+++++. ..++..+... +.+.
T Consensus 127 ---------------------------~~~~v~L~~~~r~~~~~-~~~~eL~~l~~~-----~~~~~~~~~~--~~~~-- 169 (261)
T TIGR02911 127 ---------------------------EIKSLNLILGFKTPDDI-LFKEDIAEWKGN-----INLTLTLDEA--EEDY-- 169 (261)
T ss_pred ---------------------------cCceEEEEEecCCHHHh-hHHHHHHHHHhc-----CcEEEEEcCC--CCCC--
Confidence 13689999999999987 778888887652 1233333211 1110
Q ss_pred HHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 862 ALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 862 ~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
.+ ..|+-+ +.+.+.... +..+..||+||||+|++++++.+++.+
T Consensus 170 -------------------~~-----~~g~v~--~~l~~~~~~-~~~~~~v~lCGp~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 170 -------------------KG-----NIGLVT--KYIPELTLK-DIEEVQAIVVGPPIMMKFTVQELLKKG 213 (261)
T ss_pred -------------------cC-----CeeccC--HhHHhccCC-CccceEEEEECCHHHHHHHHHHHHHcC
Confidence 00 112322 222221111 123457999999999999999998853
No 55
>PRK05802 hypothetical protein; Provisional
Probab=99.87 E-value=7.8e-21 Score=211.49 Aligned_cols=150 Identities=20% Similarity=0.304 Sum_probs=121.0
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCC---CccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEcCCchHHHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQ---FRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQLGDWTQELKR 697 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~G~~T~~L~~ 697 (946)
+.++|++++.+++++..+++..|.. ..++|||||+|+++..+.+..|||||+++|. ++.++|+||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 4678899999999999999998754 3479999999999865556779999999874 57899999999999998864
Q ss_pred HHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCC--CC-C--CCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhh
Q 002259 698 VFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAP--AQ-D--YRNYDVLLLVGLGIGATPFISILKDLLNNIVKQ 772 (946)
Q Consensus 698 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~--~~-~--~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~ 772 (946)
+ .+| ..+.|.||||.. .. + ....+++|+|||||||||+++++++++.+
T Consensus 145 l--------~~G---------------d~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~---- 197 (320)
T PRK05802 145 L--------NKG---------------DEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSN---- 197 (320)
T ss_pred C--------CCC---------------CEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHc----
Confidence 3 234 789999999753 21 1 12356899999999999999999998653
Q ss_pred hhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHH
Q 002259 773 EEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVA 836 (946)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~ 836 (946)
..+++++|..|+.+++ +++++++++.
T Consensus 198 -------------------------------------~~~v~li~g~r~~~~~-~~~~el~~~~ 223 (320)
T PRK05802 198 -------------------------------------GNKIIVIIDKGPFKNN-FIKEYLELYN 223 (320)
T ss_pred -------------------------------------CCcEEEEEeCCCHHHH-HHHHHHHHhh
Confidence 1369999999999987 6677776653
No 56
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.86 E-value=2.6e-20 Score=202.90 Aligned_cols=208 Identities=16% Similarity=0.270 Sum_probs=146.4
Q ss_pred cCCEEEEEEECC--CCCccCCCcEEEEEcCCCCCCccccceeccCCCC--CeEEEEEEEc-----------CCchHHHHH
Q 002259 633 PGNVLTLQMSRP--PQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD--DYLSVHIRQL-----------GDWTQELKR 697 (946)
Q Consensus 633 ~~~v~~l~l~~p--~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~--~~l~l~Ir~~-----------G~~T~~L~~ 697 (946)
+.++.+|+|..| ..++|+||||+.|.+|. ....|||||+|.|++ +.+.|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 457999999988 57889999999999875 346799999999864 7899999986 778888765
Q ss_pred HHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccC-CCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhc
Q 002259 698 VFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYG-APAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQA 776 (946)
Q Consensus 698 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~ 776 (946)
+ ..| ..+.|.||+| .+..+-...+++|||||||||||++|++++++....+
T Consensus 92 l--------k~G---------------d~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~----- 143 (267)
T cd06182 92 L--------QLG---------------AKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRAN----- 143 (267)
T ss_pred C--------CCC---------------CEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhc-----
Confidence 3 133 7899999999 6654334457899999999999999999998764211
Q ss_pred ccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCC-CchhhHHHHHHHHHhHcCCCeEEEEEEEecccC
Q 002259 777 DSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQ-GSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYE 855 (946)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~-~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~ 855 (946)
.....++.|+|.+|+. +++ .|.+.|.++++.. ..+.++..+++...
T Consensus 144 ------------------------------~~~~~~v~l~~g~r~~~~d~-~~~del~~~~~~~--~~~~~~~~~S~~~~ 190 (267)
T cd06182 144 ------------------------------GKARGPAWLFFGCRNFASDY-LYREELQEALKDG--ALTRLDVAFSREQA 190 (267)
T ss_pred ------------------------------cccCCCEEEEEeCCCCcccc-cHHHHHHHHHhCC--CcceEEEEEccCCC
Confidence 0114679999999999 776 6788888887732 34666666654211
Q ss_pred CCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChh-HHHHHHHHHHhhhc
Q 002259 856 EGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPV-LAKELSKLCYEFNQ 933 (946)
Q Consensus 856 ~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~-l~~~vr~~~~~~~~ 933 (946)
..... +.. ...-+ .+.+.+... .. ..||+|||+. |++.+.+.+.++..
T Consensus 191 ~~~~~-------------------v~~------~l~~~-~~~l~~~l~---~~-~~vyvCGp~~~m~~~v~~~L~~~~~ 239 (267)
T cd06182 191 EPKVY-------------------VQD------KLKEH-AEELRRLLN---EG-AHIYVCGDAKSMAKDVEDALVKIIA 239 (267)
T ss_pred CCcee-------------------hHH------HHHHh-HHHHHHHHh---cC-CEEEEECCcccchHHHHHHHHHHHH
Confidence 10000 000 00000 011111111 12 2799999999 99999999998743
No 57
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.86 E-value=4.3e-20 Score=207.64 Aligned_cols=215 Identities=17% Similarity=0.266 Sum_probs=146.8
Q ss_pred CCEEEEEEECCCCCccCCCcEEEEEcCCCC----CCccccceeccCCC-----CCeEEEEEEEc-----------CCchH
Q 002259 634 GNVLTLQMSRPPQFRYKSGQYMFVQCPAVS----PFEWHPFSITSAPG-----DDYLSVHIRQL-----------GDWTQ 693 (946)
Q Consensus 634 ~~v~~l~l~~p~~~~~~pGQ~v~l~~p~~s----~~e~HPFTIas~p~-----~~~l~l~Ir~~-----------G~~T~ 693 (946)
+++.+|+|..+..+.|+||||+.|.+|+.. +...+||||+|.|. +++++|+||.. |..|.
T Consensus 108 ~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~ 187 (367)
T PLN03115 108 GETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSN 187 (367)
T ss_pred CceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHh
Confidence 489999998877889999999999987532 23579999999983 35899999964 66788
Q ss_pred HHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCC-CCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhh
Q 002259 694 ELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQ-DYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQ 772 (946)
Q Consensus 694 ~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~-~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~ 772 (946)
.|.++ .+| ..|.|.||+|.+.. +.....++||||||+||||++|+|++++.....
T Consensus 188 ~L~~L--------k~G---------------d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~- 243 (367)
T PLN03115 188 FLCDL--------KPG---------------AEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHD- 243 (367)
T ss_pred hHhhC--------CCc---------------CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccc-
Confidence 88763 234 78999999998653 223445899999999999999999987653210
Q ss_pred hhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEec
Q 002259 773 EEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTS 852 (946)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~ 852 (946)
...-..++.|+|++|+.+++ +|.++|+++++..+ .+++++..+++
T Consensus 244 ---------------------------------~~~~~~~v~Lf~G~R~~~dl-ly~dELe~l~~~~p-~~f~v~~a~SR 288 (367)
T PLN03115 244 ---------------------------------DYKFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKAP-ENFRLDFAVSR 288 (367)
T ss_pred ---------------------------------cccCCCcEEEEEccCCHHHh-hHHHHHHHHHHhCC-CCEEEEEEEcC
Confidence 00013579999999999886 78888888776532 35777777764
Q ss_pred ccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 853 VYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 853 ~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
..+.. .|.+..++ .+ +.+...++.+.-......||+|||++|++.|.+++.++.
T Consensus 289 ~~~~~-----------------------~G~kgyVq-d~--i~e~~e~l~~~l~~~~~~vYiCGp~~M~~~V~~~l~~l~ 342 (367)
T PLN03115 289 EQTNA-----------------------KGEKMYIQ-TR--MAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLA 342 (367)
T ss_pred CCccc-----------------------CCcceeeh-hH--HHHHHHHHHhhcccCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 32211 01110110 00 011111111111123467999999999999999888765
Q ss_pred c
Q 002259 933 Q 933 (946)
Q Consensus 933 ~ 933 (946)
.
T Consensus 343 ~ 343 (367)
T PLN03115 343 A 343 (367)
T ss_pred H
Confidence 4
No 58
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.85 E-value=3.8e-20 Score=204.90 Aligned_cols=221 Identities=15% Similarity=0.240 Sum_probs=152.8
Q ss_pred eeeeeeEEEEEEEEecCCEEEEEEECCC---CCccCCCcEEEEEcCCCC----CCccccceeccCCC-CCeEEEEEEEc-
Q 002259 618 RSGFSTVRLLKVAIYPGNVLTLQMSRPP---QFRYKSGQYMFVQCPAVS----PFEWHPFSITSAPG-DDYLSVHIRQL- 688 (946)
Q Consensus 618 r~~~~~~~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~s----~~e~HPFTIas~p~-~~~l~l~Ir~~- 688 (946)
...+..+++++++.+++++..++++.+. .+.|+||||+.|+++.-. ....||||++|.|. ++.++|+||..
T Consensus 30 ~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~ 109 (300)
T PTZ00319 30 PDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYF 109 (300)
T ss_pred cCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEec
Confidence 3445567889999999999999997642 267999999999997532 13579999999885 57899999986
Q ss_pred ----------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCC---------------CCC
Q 002259 689 ----------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDY---------------RNY 743 (946)
Q Consensus 689 ----------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~---------------~~~ 743 (946)
|..|+.|.++ .+| +.+.|.||+|.+...- ...
T Consensus 110 ~~~~~~~~~~G~~S~~L~~l--------~~G---------------d~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~ 166 (300)
T PTZ00319 110 KGVHPSFPNGGRLSQHLYHM--------KLG---------------DKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHV 166 (300)
T ss_pred cCCCCCCCCCCChhhhhhcC--------CCC---------------CEEEEEccceeeEecCCcceeecccccccccccc
Confidence 8888888532 134 7899999999863210 123
Q ss_pred CEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCC
Q 002259 744 DVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQG 823 (946)
Q Consensus 744 ~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~ 823 (946)
++++|||||+||||+++++++++.+.. ..++++|+|++|+.+
T Consensus 167 ~~illIAgGtGIaP~~sml~~l~~~~~--------------------------------------~~~~i~liyg~r~~~ 208 (300)
T PTZ00319 167 DAFAMIAGGTGITPMLQIIHAIKKNKE--------------------------------------DRTKVFLVYANQTED 208 (300)
T ss_pred ceEEEEecCcccCHHHHHHHHHHhCCC--------------------------------------CCceEEEEEecCCHH
Confidence 589999999999999999999875411 135899999999999
Q ss_pred chhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHh
Q 002259 824 SFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSS 903 (946)
Q Consensus 824 ~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~ 903 (946)
++ .+.+.|.++++. ..+.++..+++... +. ..+ +.||-+- .++++...
T Consensus 209 dl-~~~~eL~~~~~~---~~~~~~~~~~~~~~--~~--------------------~~~-----~~G~v~~-~~l~~~~~ 256 (300)
T PTZ00319 209 DI-LLRKELDEAAKD---PRFHVWYTLDREAT--PE--------------------WKY-----GTGYVDE-EMLRAHLP 256 (300)
T ss_pred Hh-hHHHHHHHHhhC---CCEEEEEEECCCCC--CC--------------------ccc-----ccceeCH-HHHHhhcC
Confidence 87 566667664332 34776666554211 00 001 1144332 23333322
Q ss_pred hcC-----CCcEEEEEeCChhHHH-HHHHHHHhh
Q 002259 904 KHC-----NARIGVFYCGAPVLAK-ELSKLCYEF 931 (946)
Q Consensus 904 ~~~-----~~~v~V~~CGP~~l~~-~vr~~~~~~ 931 (946)
... ..+..||+|||++|++ .+++.+.+.
T Consensus 257 ~~~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 257 VPDPQNSGIKKVMALMCGPPPMLQMAVKPNLEKI 290 (300)
T ss_pred CccccccccCCeEEEEECCHHHHHHHHHHHHHHc
Confidence 110 0346799999999999 567777764
No 59
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.85 E-value=5.7e-20 Score=198.00 Aligned_cols=151 Identities=16% Similarity=0.237 Sum_probs=114.0
Q ss_pred CEEEEEEECC-CCCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEEcCC-------chHHHHHHHhhcCCCC
Q 002259 635 NVLTLQMSRP-PQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGD-------WTQELKRVFSEACEPP 706 (946)
Q Consensus 635 ~v~~l~l~~p-~~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~~G~-------~T~~L~~~~~~~~~~~ 706 (946)
++.+|++..+ ..+.|+||||+.|.++. ...+|||||+|.|.++.++|+||..++ .|..|.+.+.
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~------ 88 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHAP------ 88 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCCC------
Confidence 5899999887 57889999999999864 347799999999988899999998743 7887766421
Q ss_pred CCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCC
Q 002259 707 VAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRS 786 (946)
Q Consensus 707 ~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~ 786 (946)
+| .+|.|.||.|..........++||||||+||||++|+++++..+.
T Consensus 89 -~G---------------d~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~----------------- 135 (245)
T cd06200 89 -IG---------------ASVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG----------------- 135 (245)
T ss_pred -CC---------------CEEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-----------------
Confidence 23 789999987654322224578999999999999999999886431
Q ss_pred CCCCCCCCCCCCccCccccccCccceEEEEEEeCCCC-chhhHHHHHHHHHhHcCCCeEEEEEEEec
Q 002259 787 DNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQG-SFDWFKGVMNEVAELDQRGVIEMHNYLTS 852 (946)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~-~~~wf~~~L~el~e~~~~~~i~i~~yvT~ 852 (946)
.+++.+++++|+.+ ++ .|.+++.++++... ...++..+++
T Consensus 136 -----------------------~~~~~l~~g~r~~~~d~-~~~~el~~~~~~~~--~~~~~~~~s~ 176 (245)
T cd06200 136 -----------------------RHRNWLLFGERQAAHDF-FCREELEAWQAAGH--LARLDLAFSR 176 (245)
T ss_pred -----------------------CCCeEEEEecCCccccH-hHHHHHHHHHHCCC--cceEEEEEcc
Confidence 24678999999985 54 57788887766432 3445555553
No 60
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.85 E-value=7.4e-20 Score=196.07 Aligned_cols=223 Identities=15% Similarity=0.257 Sum_probs=172.6
Q ss_pred eeeeEEEEEEEEecCCEEEEEEECCC---CCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchH
Q 002259 620 GFSTVRLLKVAIYPGNVLTLQMSRPP---QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQ 693 (946)
Q Consensus 620 ~~~~~~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~ 693 (946)
.++.+++.+.+.++.|+..++|..|. .+....|||+++..|-....-.+|||..|.+.+ +++.|.||.. |..|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 35677888889999999888888774 467899999999999877778899999998876 7999999987 88999
Q ss_pred HHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhh
Q 002259 694 ELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQE 773 (946)
Q Consensus 694 ~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~ 773 (946)
.|.++ +.| +.|.+.||.|....+...++++.+||||+||||++.++++++.+..
T Consensus 130 ~l~~L--------kiG---------------d~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~--- 183 (286)
T KOG0534|consen 130 HLDSL--------KIG---------------DTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE--- 183 (286)
T ss_pred HHhcC--------CCC---------------CEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC---
Confidence 88765 233 7999999999976555568999999999999999999999986531
Q ss_pred hhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecc
Q 002259 774 EQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSV 853 (946)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~ 853 (946)
..+++++++.+++++++ |++++|+++++.... .+.++.+++..
T Consensus 184 -----------------------------------d~tki~lly~N~te~DI-Llr~eL~~la~~~p~-rf~~~y~v~~~ 226 (286)
T KOG0534|consen 184 -----------------------------------DTTKISLLYANKTEDDI-LLREELEELASKYPE-RFKVWYVVDQP 226 (286)
T ss_pred -----------------------------------CCcEEEEEEecCCcccc-chHHHHHHHHhhCcc-eEEEEEEEcCC
Confidence 15789999999999998 999999999987764 78998888765
Q ss_pred cCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHH-HHHHHHhhh
Q 002259 854 YEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKE-LSKLCYEFN 932 (946)
Q Consensus 854 ~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~-vr~~~~~~~ 932 (946)
.+..+. .-|+++-+ ++++..-....+.+-|++||||+|++. +..++.+++
T Consensus 227 ~~~w~~----------------------------~~g~It~~-~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~~le~Lg 277 (286)
T KOG0534|consen 227 PEIWDG----------------------------SVGFITKD-LIKEHLPPPKEGETLVLICGPPPMINGAAQGNLEKLG 277 (286)
T ss_pred cccccC----------------------------ccCccCHH-HHHhhCCCCCCCCeEEEEECCHHHHhHHHHHHHHhcC
Confidence 422221 12455543 344433222223689999999999985 444445454
Q ss_pred cC
Q 002259 933 QK 934 (946)
Q Consensus 933 ~~ 934 (946)
..
T Consensus 278 ~~ 279 (286)
T KOG0534|consen 278 YN 279 (286)
T ss_pred CC
Confidence 43
No 61
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.84 E-value=1.8e-19 Score=198.68 Aligned_cols=211 Identities=15% Similarity=0.252 Sum_probs=146.1
Q ss_pred eeeeEEEEEEEEec----CCEEEEEEECCC-------CCccCCCcEEEEEcCCCCCCccccceeccCCCCCeEEEEEEE-
Q 002259 620 GFSTVRLLKVAIYP----GNVLTLQMSRPP-------QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQ- 687 (946)
Q Consensus 620 ~~~~~~i~~v~~~~----~~v~~l~l~~p~-------~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~- 687 (946)
....+++++.+.++ +++..++|..|. ...|+||||+.|.+++. ...|||||+|.|+++.+.|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCCCCCeEEEEEEeC
Confidence 34567788888887 589999999876 46799999999987643 25699999999988899999998
Q ss_pred -cCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEe-CccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHH
Q 002259 688 -LGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLID-GPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDL 765 (946)
Q Consensus 688 -~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~id-GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l 765 (946)
.|..|..|.++ .+| ..+.+. +|+|.+..+ ...+++|||||||||||++|++++.
T Consensus 122 ~~G~~S~~L~~l--------~~G---------------d~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~ 177 (289)
T cd06201 122 PGGLCSGYLHGL--------KPG---------------DTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRAN 177 (289)
T ss_pred CCccchhhHhhC--------CCc---------------CEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhh
Confidence 58889888753 134 678777 478877542 4457899999999999999999764
Q ss_pred HHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEE
Q 002259 766 LNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIE 845 (946)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~ 845 (946)
. ..++++|+|++|+.++-..|+++|+++++... .+.
T Consensus 178 ~------------------------------------------~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~--~~~ 213 (289)
T cd06201 178 A------------------------------------------ARRPMHLYWGGRDPASDFLYEDELDQYLADGR--LTQ 213 (289)
T ss_pred h------------------------------------------ccCCEEEEEEecCcccchHHHHHHHHHHHcCC--Cce
Confidence 1 03579999999998532367888888766432 244
Q ss_pred EEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHH
Q 002259 846 MHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELS 925 (946)
Q Consensus 846 i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr 925 (946)
++..+++....+.. . ...|-+... +..... ....||+|||++|++.++
T Consensus 214 ~~~~~s~~~~~g~v---------------------~------~~l~~~~~~-l~~~~~----~~~~vyiCGp~~M~~~v~ 261 (289)
T cd06201 214 LHTAFSRTPDGAYV---------------------Q------DRLRADAER-LRRLIE----DGAQIMVCGSRAMAQGVA 261 (289)
T ss_pred EEEEECCCCCcccc---------------------h------hHHHHhHHH-HHHHHH----CCcEEEEECCHHHHHHHH
Confidence 44444322110000 0 000111111 111111 235699999999999999
Q ss_pred HHHHhhh
Q 002259 926 KLCYEFN 932 (946)
Q Consensus 926 ~~~~~~~ 932 (946)
+.+.++.
T Consensus 262 ~~L~~i~ 268 (289)
T cd06201 262 AVLEEIL 268 (289)
T ss_pred HHHHHHH
Confidence 9998864
No 62
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.84 E-value=2.1e-19 Score=193.97 Aligned_cols=202 Identities=23% Similarity=0.400 Sum_probs=148.1
Q ss_pred EEEEEEEEecCCEEEEEEECCCC-CccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEE--cCCchHHHHHHH
Q 002259 624 VRLLKVAIYPGNVLTLQMSRPPQ-FRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQ--LGDWTQELKRVF 699 (946)
Q Consensus 624 ~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~--~G~~T~~L~~~~ 699 (946)
.+|.+++.+++++..+++..|.. +.++||||+.|+.|. ....|||+++.|+ ++.+.|+|+. .|-.|+.+.++
T Consensus 10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~- 85 (252)
T COG0543 10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL- 85 (252)
T ss_pred cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc-
Confidence 67889999999999999987654 689999999999998 4789999999987 4556666555 79999988766
Q ss_pred hhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccc
Q 002259 700 SEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSV 779 (946)
Q Consensus 700 ~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~ 779 (946)
..| ..+.|.||||.+...-....++++||||+|++|++++++++..+.
T Consensus 86 -------k~g---------------d~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~---------- 133 (252)
T COG0543 86 -------KEG---------------DKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG---------- 133 (252)
T ss_pred -------cCC---------------CEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC----------
Confidence 123 679999999998753334445999999999999999999987642
Q ss_pred cccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCch
Q 002259 780 SDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDA 859 (946)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~ 859 (946)
...+|+++|..|+.+++ .+.+.+.++++. +++ ++|. +...
T Consensus 134 -----------------------------~~~~V~~~~G~~~~~dl-~~~~el~~~~~~------~~~-~~~~--~~~~- 173 (252)
T COG0543 134 -----------------------------DANKVTLLYGARTAKDL-LLLDELEELAEK------EVH-PVTD--DGWK- 173 (252)
T ss_pred -----------------------------CCceEEEEEeccChhhc-ccHHHHHHhhcC------cEE-EEEC--CCCC-
Confidence 24789999999999997 555666666542 222 2232 1100
Q ss_pred hHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 860 RSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 860 ~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
|.. |... .++++++... +...||+||||.|++.+++.+.+..
T Consensus 174 ----------------------G~~-----G~v~-~~~~~~~~~~---~~~~v~~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 174 ----------------------GRK-----GFVT-TDVLKELLDL---EVDDVYICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred ----------------------ccC-----ccee-HHHHhhhccc---cCCEEEEECCHHHHHHHHHHHHhcC
Confidence 100 1110 2344443322 3357999999999999999999876
No 63
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.83 E-value=3.4e-19 Score=204.99 Aligned_cols=156 Identities=13% Similarity=0.244 Sum_probs=119.1
Q ss_pred eeEEEEEEEEec-----CCEEEEEEECCC-CCccCCCcEEEEEcCCCC----CCccccceeccCCCC-----CeEEEEEE
Q 002259 622 STVRLLKVAIYP-----GNVLTLQMSRPP-QFRYKSGQYMFVQCPAVS----PFEWHPFSITSAPGD-----DYLSVHIR 686 (946)
Q Consensus 622 ~~~~i~~v~~~~-----~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~s----~~e~HPFTIas~p~~-----~~l~l~Ir 686 (946)
...+|+..+.+. +++.+|++..+. .+.|+||||+.|.+|... +..+|||||+|.|++ +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 346777888884 499999998876 688999999999998532 246799999998742 47999999
Q ss_pred Ec----------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCC-CCCCCCEEEEEEcCCCH
Q 002259 687 QL----------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQ-DYRNYDVLLLVGLGIGA 755 (946)
Q Consensus 687 ~~----------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~-~~~~~~~vvlIagGiGI 755 (946)
.. |..|..|.++ ++| ..|.|.||||.... +.....++|||||||||
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~l--------k~G---------------d~v~v~GP~G~~f~lp~~~~~~lllIagGtGI 279 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCDL--------KKG---------------DKVQVIGPFGSTFLMPNHPESSIMMICTGTGS 279 (411)
T ss_pred EEEecCCCCcCcccchhHHhcC--------CCc---------------CEEEEEeccCCcccCCCCCCCCEEEEecccCc
Confidence 86 6688888763 234 78999999998542 22234689999999999
Q ss_pred HHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHH
Q 002259 756 TPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEV 835 (946)
Q Consensus 756 TP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el 835 (946)
||++|+++++...... ....+++|+|.+|+.+++ .+.+.|+++
T Consensus 280 AP~~s~l~~~~~~~~~------------------------------------~~~~~v~L~~G~Rt~~dl-~y~~eL~~l 322 (411)
T TIGR03224 280 APMRAMTERRRRRRDH------------------------------------GEGGKLMLFFGARTKEEL-PYFGPLQKL 322 (411)
T ss_pred HHHHHHHHHHHHHhhc------------------------------------CCCCCEEEEEecCccccc-hHHHHHHHH
Confidence 9999999998764211 014689999999999987 555666666
Q ss_pred Hh
Q 002259 836 AE 837 (946)
Q Consensus 836 ~e 837 (946)
.+
T Consensus 323 ~~ 324 (411)
T TIGR03224 323 PK 324 (411)
T ss_pred Hh
Confidence 54
No 64
>PLN02252 nitrate reductase [NADPH]
Probab=99.82 E-value=4.6e-19 Score=218.87 Aligned_cols=223 Identities=14% Similarity=0.208 Sum_probs=162.0
Q ss_pred eeeeeEEEEEEEEecCCEEEEEEECCCC---CccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEc------
Q 002259 619 SGFSTVRLLKVAIYPGNVLTLQMSRPPQ---FRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQL------ 688 (946)
Q Consensus 619 ~~~~~~~i~~v~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~------ 688 (946)
..+..+++++++.+++++..++|..|.. +.++|||||+|+++..+....||||++|.++ ++++.|+||..
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 3456788999999999999999987753 5789999999998644444679999999986 47999999986
Q ss_pred -----CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCC--------C--CCCCCEEEEEEcCC
Q 002259 689 -----GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQ--------D--YRNYDVLLLVGLGI 753 (946)
Q Consensus 689 -----G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~--------~--~~~~~~vvlIagGi 753 (946)
|..|+.|.++ ..| ..|.|.||+|.+.. + ....++++|||||+
T Consensus 712 ~~p~gG~~S~~L~~L--------~vG---------------d~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGs 768 (888)
T PLN02252 712 KFPNGGLMSQYLDSL--------PIG---------------DTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGT 768 (888)
T ss_pred ccCCCCchhhHHhcC--------CCC---------------CEEEEecCccceeecccceeeeccccccCceEEEEecce
Confidence 6788877543 234 78999999998521 1 12357899999999
Q ss_pred CHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHH
Q 002259 754 GATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMN 833 (946)
Q Consensus 754 GITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~ 833 (946)
||||++++|++++.+.. ..++++|+|++|+.+++ .|+++|+
T Consensus 769 GITPi~silr~ll~~~~--------------------------------------d~t~i~Liyg~Rt~~Di-l~~eEL~ 809 (888)
T PLN02252 769 GITPMYQVIQAILRDPE--------------------------------------DKTEMSLVYANRTEDDI-LLREELD 809 (888)
T ss_pred ehhHHHHHHHHHHhccC--------------------------------------CCCcEEEEEEECCHHHh-hHHHHHH
Confidence 99999999999986421 13679999999999987 7888888
Q ss_pred HHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEE
Q 002259 834 EVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVF 913 (946)
Q Consensus 834 el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~ 913 (946)
++++... ..+.++..+++... +. ..| ..||.+- +++++..... .....||
T Consensus 810 ~la~~~p-~~~~v~~vls~~~~--~~--------------------w~g-----~~GrV~~-~ll~~~l~~~-~~~~~vy 859 (888)
T PLN02252 810 RWAAEHP-DRLKVWYVVSQVKR--EG--------------------WKY-----SVGRVTE-AMLREHLPEG-GDETLAL 859 (888)
T ss_pred HHHHhCC-CCEEEEEEecCCCc--CC--------------------CCC-----cCCcCCH-HHHHHhcccC-CCCeEEE
Confidence 8876542 35777766653210 00 111 1255552 3444443221 2346799
Q ss_pred EeCChhHHHH-HHHHHHhhhc
Q 002259 914 YCGAPVLAKE-LSKLCYEFNQ 933 (946)
Q Consensus 914 ~CGP~~l~~~-vr~~~~~~~~ 933 (946)
+|||++|++. ++..+.+.+.
T Consensus 860 iCGPp~Mi~~av~~~L~~~G~ 880 (888)
T PLN02252 860 MCGPPPMIEFACQPNLEKMGY 880 (888)
T ss_pred EeCCHHHHHHHHHHHHHHcCC
Confidence 9999999995 7778877543
No 65
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.80 E-value=3.2e-18 Score=183.31 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=94.2
Q ss_pred EEEEEEecCCEEEEEEECCCC---CccCCCcEEEEEcCCCC-------------------CCccccceeccCC-CCCeEE
Q 002259 626 LLKVAIYPGNVLTLQMSRPPQ---FRYKSGQYMFVQCPAVS-------------------PFEWHPFSITSAP-GDDYLS 682 (946)
Q Consensus 626 i~~v~~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~s-------------------~~e~HPFTIas~p-~~~~l~ 682 (946)
|++++.+++++.+|+|+.|.. ..|+||||+.|.+|... ....++|||++.+ ++++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 356788899999999998764 57899999999998643 4578999999986 578899
Q ss_pred EEEEEc---CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHH
Q 002259 683 VHIRQL---GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFI 759 (946)
Q Consensus 683 l~Ir~~---G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~l 759 (946)
|.|+.. |..|+.|.++ .+| ..|.|.||+|.+... ...+++||||||+||||++
T Consensus 81 ~~v~~~~~~G~~s~~l~~l--------~~G---------------d~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~ 136 (235)
T cd06193 81 IDFVLHGDEGPASRWAASA--------QPG---------------DTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIA 136 (235)
T ss_pred EEEEeCCCCCchHHHHhhC--------CCC---------------CEEEEECCCCCCCCC-CCcceEEEEeccchHHHHH
Confidence 999876 5577777543 234 799999999998753 3567899999999999999
Q ss_pred HHHHHH
Q 002259 760 SILKDL 765 (946)
Q Consensus 760 sil~~l 765 (946)
++++++
T Consensus 137 ~il~~~ 142 (235)
T cd06193 137 AILEEL 142 (235)
T ss_pred HHHHhC
Confidence 998865
No 66
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.78 E-value=1e-20 Score=176.30 Aligned_cols=100 Identities=37% Similarity=0.838 Sum_probs=7.2
Q ss_pred eeEEEEEEEEecCCEEEEEEECCCC-CccCCCcEEEEEcCCCC--CCccccceeccCCCCCeEEEEEEEcCCchHHHHHH
Q 002259 622 STVRLLKVAIYPGNVLTLQMSRPPQ-FRYKSGQYMFVQCPAVS--PFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRV 698 (946)
Q Consensus 622 ~~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~s--~~e~HPFTIas~p~~~~l~l~Ir~~G~~T~~L~~~ 698 (946)
.++++++++.+++++++|++++|.. ++|+||||+||++|.++ .||||||||+|+|+++.++|+||..||||++|++.
T Consensus 2 ~~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 2 FNVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHH
Confidence 3567889999999999999999986 99999999999999999 56999999999999999999999999999999988
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCC
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAP 736 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~ 736 (946)
+.+... ......++.||||||.+
T Consensus 82 ~~~~~~---------------~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESPS---------------KQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ------------------------------TTSTTSHH
T ss_pred Hhhhcc---------------cCCCceEEEEECCCCCC
Confidence 754210 01124789999999974
No 67
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.77 E-value=1e-17 Score=209.82 Aligned_cols=211 Identities=15% Similarity=0.252 Sum_probs=146.2
Q ss_pred eeeEEEEEEEEecCCEEEEEEECCCC-CccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEcCCchHHHHHH
Q 002259 621 FSTVRLLKVAIYPGNVLTLQMSRPPQ-FRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQLGDWTQELKRV 698 (946)
Q Consensus 621 ~~~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~G~~T~~L~~~ 698 (946)
+..++|++++.+++++..+++..|.. ..++||||+.|.++..+ +.|||||++.|. ++.++|+||..|..|..|.++
T Consensus 648 ~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~l 725 (944)
T PRK12779 648 QIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINRM 725 (944)
T ss_pred ceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhcC
Confidence 46778899999999999999988754 47999999999986443 569999999874 678999999999888766543
Q ss_pred HhhcCCCCCCCCCCcccccccccCCCCEEE-EeCccCCCCCC--CCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhh
Q 002259 699 FSEACEPPVAGKSGLLRADETTKKSLPKLL-IDGPYGAPAQD--YRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQ 775 (946)
Q Consensus 699 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~-idGPyG~~~~~--~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~ 775 (946)
.+| ..+. |.||+|.+... ....+++||||||+||||++++++++...
T Consensus 726 --------k~G---------------d~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~------- 775 (944)
T PRK12779 726 --------AIG---------------DAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRL------- 775 (944)
T ss_pred --------CCc---------------CEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHC-------
Confidence 234 6784 99999997521 12236899999999999999999987642
Q ss_pred cccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHH---HHhHcCCCeEEEEEEEec
Q 002259 776 ADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNE---VAELDQRGVIEMHNYLTS 852 (946)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~e---l~e~~~~~~i~i~~yvT~ 852 (946)
..+|+|+|..|+.+++ .+.+.+++ +++... ..+++ +++.
T Consensus 776 ----------------------------------g~~V~li~G~Rs~edl-~~~del~~L~~la~~~~-~~~~v--~~tt 817 (944)
T PRK12779 776 ----------------------------------GNHVTLISGFRAKEFL-FWTGDDERVGKLKAEFG-DQLDV--IYTT 817 (944)
T ss_pred ----------------------------------CCCEEEEEEeCCHHHh-hhHHHHHHHHHHHHHcC-CCeEE--EEEe
Confidence 2469999999999876 44444444 443322 22333 3332
Q ss_pred ccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcC---C-CcEEEEEeCChhHHHHHHHHH
Q 002259 853 VYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHC---N-ARIGVFYCGAPVLAKELSKLC 928 (946)
Q Consensus 853 ~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~---~-~~v~V~~CGP~~l~~~vr~~~ 928 (946)
. |.. .|. .|+.+ +.+.+...+.. + ....||+|||+.|++.+.+.+
T Consensus 818 d----dgs--------------------~G~-----~G~Vt--~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l 866 (944)
T PRK12779 818 N----DGS--------------------FGV-----KGFVT--GPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLT 866 (944)
T ss_pred c----CCC--------------------CCC-----ccccC--hHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHH
Confidence 1 100 010 12222 22333322221 0 124699999999999999999
Q ss_pred Hhhh
Q 002259 929 YEFN 932 (946)
Q Consensus 929 ~~~~ 932 (946)
.+.+
T Consensus 867 ~~~G 870 (944)
T PRK12779 867 KPYG 870 (944)
T ss_pred HHcC
Confidence 8754
No 68
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.77 E-value=1.5e-17 Score=206.46 Aligned_cols=199 Identities=21% Similarity=0.346 Sum_probs=143.5
Q ss_pred EEEEEEEecCCEEEEEEECCC-CCccCCCcEEEEEcCCCCCCccccceeccCCC-CCeEEEEEEEcCCchHHHHHHHhhc
Q 002259 625 RLLKVAIYPGNVLTLQMSRPP-QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG-DDYLSVHIRQLGDWTQELKRVFSEA 702 (946)
Q Consensus 625 ~i~~v~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~-~~~l~l~Ir~~G~~T~~L~~~~~~~ 702 (946)
+|++++.+++++..++|..|. ...++||||+.|+++... +.|||||++.|. ++.++|+||..|..|..|.++
T Consensus 3 ~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l---- 76 (752)
T PRK12778 3 KIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEVGLSTTKLCEL---- 76 (752)
T ss_pred EEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcC----
Confidence 567888899999999998775 357999999999997543 579999999874 678999999999999998753
Q ss_pred CCCCCCCCCCcccccccccCCCCEE-EEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccc
Q 002259 703 CEPPVAGKSGLLRADETTKKSLPKL-LIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSD 781 (946)
Q Consensus 703 ~~~~~~G~~~~~~~~~~~~~~~~~v-~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~ 781 (946)
.+| ..+ .|.||||.+.. ....++++|||||+||||++++++++..+
T Consensus 77 ----~~G---------------d~v~~v~GP~G~~~~-~~~~~~~llvaGG~GiaPl~~l~~~l~~~------------- 123 (752)
T PRK12778 77 ----NEG---------------DYITDVVGPLGNPSE-IENYGTVVCAGGGVGVAPMLPIVKALKAA------------- 123 (752)
T ss_pred ----CCC---------------CEeCeEeCCCCCCcc-CCCCCeEEEEECCEeHHHHHHHHHHHHHC-------------
Confidence 234 688 79999999874 33457999999999999999999988643
Q ss_pred cccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhH
Q 002259 782 FSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARS 861 (946)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~ 861 (946)
..+++++|..|+.+++ .|.+.|.+++. .+ +++.. |.
T Consensus 124 ----------------------------~~~v~l~~g~r~~~~l-~~~~el~~~~~-----~~----~~~t~----dg-- 159 (752)
T PRK12778 124 ----------------------------GNRVITILGGRSKELI-ILEDEMRESSD-----EV----IIMTD----DG-- 159 (752)
T ss_pred ----------------------------CCeEEEEeccCCHHHh-hhHHHHHhhcC-----eE----EEEEC----CC--
Confidence 1478999999999887 45555554432 11 22211 10
Q ss_pred HHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 862 ALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 862 ~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
..|. .|+ ..+++.+..... .....||+|||+.|++.+.+.+++.+
T Consensus 160 ------------------~~g~-----~G~--v~~~l~~~~~~~-~~~~~vy~CGP~~M~~~v~~~l~~~g 204 (752)
T PRK12778 160 ------------------SYGR-----KGL--VTDGLEEVIKRE-TKVDKVFAIGPAIMMKFVCLLTKKYG 204 (752)
T ss_pred ------------------CCCC-----ccc--HHHHHHHHhhcC-CCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 0010 011 123344433211 11235999999999999999987753
No 69
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-17 Score=167.82 Aligned_cols=147 Identities=21% Similarity=0.312 Sum_probs=127.1
Q ss_pred CChhhHHHHHHHHhccc---CCCcccHHHhhhhhCCCCCHHHHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHHhcCCChH
Q 002259 188 NGVDAWNEVQSNFNKLA---KGGFLYRADFAQCIGMRDSKEFALELFDALSRRRRLKVDK-ISREELYEYWSQITDQSFD 263 (946)
Q Consensus 188 ~~~~~~~~l~~~F~~ld---~dG~I~~~eF~~~l~~~~~~~~~~~lF~~l~d~d~d~~G~-Is~~Ef~~~l~~l~~~~~~ 263 (946)
.+..++..+..+|.+++ ++|.|+.+||..++....+ .+..++++.++ .+++ |. |+|+||+.+++.+......
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~N-p~~~rI~~~f~-~~~~--~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALN-PLADRIIDRFD-TDGN--GDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcC-cHHHHHHHHHh-ccCC--CCccCHHHHHHHHhhhcCCccH
Confidence 34567788999999999 6899999999999854444 78999999555 7766 55 9999999999998776555
Q ss_pred -HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCC
Q 002259 264 -SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDT 339 (946)
Q Consensus 264 -~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~ 339 (946)
+|++.+|++||.|+||+|+++|+.+++......+... .+++.+++++.+|+++|.|+||+|+++||..++.+.|.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 4999999999999999999999999998766654443 68899999999999999999999999999999999995
No 70
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.74 E-value=1.2e-16 Score=205.60 Aligned_cols=224 Identities=14% Similarity=0.185 Sum_probs=157.1
Q ss_pred eeeeeEEEEEEE---EecCCEEEEEEECCCC---CccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc-CC
Q 002259 619 SGFSTVRLLKVA---IYPGNVLTLQMSRPPQ---FRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL-GD 690 (946)
Q Consensus 619 ~~~~~~~i~~v~---~~~~~v~~l~l~~p~~---~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~-G~ 690 (946)
..|.++++.+++ ..++++..++|..|.. +.|+|||||.|+++..+.-..++||++|.|++ +.+.|+||.. |.
T Consensus 912 ~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~ 991 (1167)
T PTZ00306 912 DKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGT 991 (1167)
T ss_pred CceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCCh
Confidence 356678888876 4578988888887753 46999999999986433334699999999964 6799999974 77
Q ss_pred chHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCC----------CCCCCCCEEEEEEcCCCHHHHHH
Q 002259 691 WTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPA----------QDYRNYDVLLLVGLGIGATPFIS 760 (946)
Q Consensus 691 ~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~----------~~~~~~~~vvlIagGiGITP~ls 760 (946)
+|..|.++ .+| ..|.|.||+|... .+....+++|||||||||||++|
T Consensus 992 ~S~~L~~l--------~~G---------------d~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~s 1048 (1167)
T PTZ00306 992 LKEWISAL--------RPG---------------DSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQ 1048 (1167)
T ss_pred hHHHHhhC--------CCC---------------CEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHH
Confidence 88888543 234 7899999988421 11234578999999999999999
Q ss_pred HHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcC
Q 002259 761 ILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQ 840 (946)
Q Consensus 761 il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~ 840 (946)
++++++.+.. ....++++|+|++|+.+++ +|+++|.++++..+
T Consensus 1049 ml~~~l~~~~------------------------------------~~~~~~i~Llyg~r~~~dl-~~~~eL~~l~~~~~ 1091 (1167)
T PTZ00306 1049 IIRAALKKPY------------------------------------VDSIESIRLIYAAEDVSEL-TYRELLESYRKENP 1091 (1167)
T ss_pred HHHHHHhCcc------------------------------------cCCCceEEEEEEeCCHHHh-hHHHHHHHHHHHCC
Confidence 9999875410 0014689999999999997 78888888876432
Q ss_pred CCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhH
Q 002259 841 RGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVL 920 (946)
Q Consensus 841 ~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l 920 (946)
..+.++..+++..+ + ..+ ..||.+- .++++.... +.....||+|||+.|
T Consensus 1092 -~~f~~~~~ls~~~~--~---------------------w~~-----~~G~i~~-~~l~~~l~~-~~~~~~vyiCGP~~m 1140 (1167)
T PTZ00306 1092 -GKFKCHFVLNNPPE--G---------------------WTD-----GVGFVDR-ALLQSALQP-PSKDLLVAICGPPVM 1140 (1167)
T ss_pred -CCEEEEEEECCCCc--c---------------------cCC-----CCCCCCH-HHHHHhcCC-CCCCeEEEEeCCHHH
Confidence 35777766653211 0 001 1144432 234443221 223467999999999
Q ss_pred HHHHHHHHHhhhc
Q 002259 921 AKELSKLCYEFNQ 933 (946)
Q Consensus 921 ~~~vr~~~~~~~~ 933 (946)
++.+++.+++...
T Consensus 1141 v~~v~~~L~~~G~ 1153 (1167)
T PTZ00306 1141 QRAVKADLLALGY 1153 (1167)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999988543
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.71 E-value=3e-16 Score=198.31 Aligned_cols=198 Identities=15% Similarity=0.253 Sum_probs=141.9
Q ss_pred EEEEEEEecCCEEEEEEECCC-CCccCCCcEEEEEcCCCCCCccccceeccCC-CCCeEEEEEEEcCCchHHHHHHHhhc
Q 002259 625 RLLKVAIYPGNVLTLQMSRPP-QFRYKSGQYMFVQCPAVSPFEWHPFSITSAP-GDDYLSVHIRQLGDWTQELKRVFSEA 702 (946)
Q Consensus 625 ~i~~v~~~~~~v~~l~l~~p~-~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p-~~~~l~l~Ir~~G~~T~~L~~~~~~~ 702 (946)
+|++.+.+.+++..+++..|. ...++|||||.|+++... +.+||||++.+ ++++++|+||..|..|+.|...+
T Consensus 3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~l--- 77 (1006)
T PRK12775 3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQALGKTTREMMTKF--- 77 (1006)
T ss_pred EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcC---
Confidence 467788899999999999886 457999999999987533 57999999876 46789999999999999885432
Q ss_pred CCCCCCCCCCcccccccccCCCCEE-EEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccc
Q 002259 703 CEPPVAGKSGLLRADETTKKSLPKL-LIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSD 781 (946)
Q Consensus 703 ~~~~~~G~~~~~~~~~~~~~~~~~v-~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~ 781 (946)
.+| +.+ .+.||+|.+.. ...++++||||||+||||++|+++.+...
T Consensus 78 ----k~G---------------d~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~------------- 124 (1006)
T PRK12775 78 ----KAG---------------DTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEA------------- 124 (1006)
T ss_pred ----CCC---------------CEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhC-------------
Confidence 134 667 79999998763 34567999999999999999999987542
Q ss_pred cccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhH
Q 002259 782 FSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARS 861 (946)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~ 861 (946)
..+++++|..|+.+.+ .+.++|.++.. . ++++.. |. +
T Consensus 125 ----------------------------g~~v~li~g~R~~~~l-~~~del~~~~~-----~----~~v~td----dg-s 161 (1006)
T PRK12775 125 ----------------------------GARTTGIIGFRNKDLV-FWEDKFGKYCD-----D----LIVCTD----DG-S 161 (1006)
T ss_pred ----------------------------CCcEEEEEeCCChHHc-ccHHHHHhhcC-----c----EEEEEC----CC-C
Confidence 1458999999998876 44555543321 1 233311 10 0
Q ss_pred HHHHHHHhhhcccCCCccccCCccccccCC-CCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 862 ALITMVQALNHAKNGVDIVSGTRVRTHFAR-PNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 862 ~~~~~~~~l~~~~~~~d~~sg~~~~~~~gR-Pd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
+|+ ....+.+.++..... .-.||+|||+.|++.+.+.+++++
T Consensus 162 ---------------------------~G~~G~vt~~l~~~l~~~~--~d~vy~CGP~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 162 ---------------------------YGKPGFVTAALKEVCEKDK--PDLVVAIGPLPMMNACVETTRPFG 204 (1006)
T ss_pred ---------------------------CCCCCChHHHHHHHhccCC--CCEEEEECCHHHHHHHHHHHHHCC
Confidence 011 112234444432211 125999999999999999988754
No 72
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=155.51 Aligned_cols=139 Identities=18% Similarity=0.317 Sum_probs=118.5
Q ss_pred CChhhHHHHHHHHhccc--CCCcccHHHhhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-CCC
Q 002259 188 NGVDAWNEVQSNFNKLA--KGGFLYRADFAQCI---GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQIT-DQS 261 (946)
Q Consensus 188 ~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~-~~~ 261 (946)
.+..+.++++++|..+| ++|.|+..||..++ |...++.++.++|..++. ++ |.|+|.||+.+|.... ...
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~--~~--~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA--GN--ETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC--CC--CccCHHHHHHHHHHHhccCC
Confidence 45567788999999998 79999999998886 888888899999996653 44 9999999999998654 667
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 262 FDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 262 ~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
.+++++.+|+.||+|+||+|+.+|+..+++.. + ++..++.++.+++++|.|+||+|+|++|..++...|
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l--g------e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSL--G------ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhh--c------ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 79999999999999999999999999999732 1 233456678889999999999999999999988766
No 73
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.64 E-value=2.5e-15 Score=152.70 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=124.9
Q ss_pred CChhhHHHHHHHHhcccCCCcccHHHhhhhh----CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChH
Q 002259 188 NGVDAWNEVQSNFNKLAKGGFLYRADFAQCI----GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFD 263 (946)
Q Consensus 188 ~~~~~~~~l~~~F~~ld~dG~I~~~eF~~~l----~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~ 263 (946)
.+..++..+++.|..-...|.++.++|..++ ...+++.+++.+|+++ |.++| |.|+|.||+.+++.+..+..+
T Consensus 23 f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~f-D~~~d--g~i~F~Efi~als~~~rGt~e 99 (193)
T KOG0044|consen 23 FSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTF-DKNKD--GTIDFLEFICALSLTSRGTLE 99 (193)
T ss_pred CCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHh-cccCC--CCcCHHHHHHHHHHHcCCcHH
Confidence 4455667788888764489999999998886 3456778999999954 47777 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhccc---ccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCC
Q 002259 264 SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANK---LSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDT 339 (946)
Q Consensus 264 ~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~---l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~ 339 (946)
++++.+|++||.||||+||++|+..+++....... ....++..++.++.+|+++|.|+||.||++||...+...|.
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHH
Confidence 99999999999999999999999999975433222 11225568889999999999999999999999999999884
No 74
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-14 Score=145.21 Aligned_cols=134 Identities=19% Similarity=0.327 Sum_probs=99.3
Q ss_pred HHHHHHHHhccc--CCCcccHHHhhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCC-----h
Q 002259 193 WNEVQSNFNKLA--KGGFLYRADFAQCI---GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQS-----F 262 (946)
Q Consensus 193 ~~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~-----~ 262 (946)
..++.+.|..+| ++|+|+.+|+..++ |...++..+..+++.++ .|++ |.|+++||..++....... .
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D-~dg~--g~I~~~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEID-LDGD--GTIDFEEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCCC--CeEcHHHHHHHHHhhhccccccccc
Confidence 345666666666 66777777776665 44456566666666433 5555 8999999988887654322 3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 002259 263 DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQK 337 (946)
Q Consensus 263 ~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~ 337 (946)
.++++.+|++||+||||+||.+||+.+|..... +++ .+.++.+++++|.|+||.|+|+||..+|...
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~--~~~------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGE--KLT------DEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC--cCC------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 458999999999999999999999999975432 222 4556788999999999999999999998653
No 75
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.57 E-value=3.8e-14 Score=139.20 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=120.9
Q ss_pred CCcHHHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhcccCCCcccHHHhhhhhCC----CCC
Q 002259 148 FDSALAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLAKGGFLYRADFAQCIGM----RDS 223 (946)
Q Consensus 148 ~~~~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld~dG~I~~~eF~~~l~~----~~~ 223 (946)
.-+.-+..+++++|.++|+|++|.|+..++..+++.+|...+.+.+.++...++. +.+.|++.+|..+|+. .+.
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~--~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA--GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC--CCCccCHHHHHHHHHHHhccCCc
Confidence 4456677899999999999999999999999999988777777665555555543 7899999999999853 456
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 224 KEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 224 ~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
.+.+.++|+ ++|.|+| |+|+.+|++.+++.+++...+++++.+++.+|.|+||+|+++||.+.+.
T Consensus 91 ~Eel~~aF~-~fD~d~d--G~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 91 EEELREAFK-LFDKDHD--GYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHHHH-HhCCCCC--ceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 678888999 6668888 9999999999999999999999999999999999999999999999885
No 76
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.53 E-value=1e-13 Score=159.19 Aligned_cols=190 Identities=15% Similarity=0.216 Sum_probs=121.8
Q ss_pred cCCCcEEEEEcCCCCCCccccceeccCCC--CCeEEEEEEE------------cCCchHHHHHHHhhcCCCCCCCCCCcc
Q 002259 649 YKSGQYMFVQCPAVSPFEWHPFSITSAPG--DDYLSVHIRQ------------LGDWTQELKRVFSEACEPPVAGKSGLL 714 (946)
Q Consensus 649 ~~pGQ~v~l~~p~~s~~e~HPFTIas~p~--~~~l~l~Ir~------------~G~~T~~L~~~~~~~~~~~~~G~~~~~ 714 (946)
...||++-+. |. .+.|||||+|+|. .+.+.+.|+. .|..|..|.++ ..|
T Consensus 147 ~~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l--------~~G----- 209 (384)
T cd06206 147 LPLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSL--------RPG----- 209 (384)
T ss_pred CCHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhC--------CCC-----
Confidence 3458887776 43 3679999999985 3556666654 46678887543 123
Q ss_pred cccccccCCCCEEE--EeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCC
Q 002259 715 RADETTKKSLPKLL--IDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGS 792 (946)
Q Consensus 715 ~~~~~~~~~~~~v~--idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (946)
..+. +.||+|.+..+.....++||||||+||||++|++++.......
T Consensus 210 ----------d~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~--------------------- 258 (384)
T cd06206 210 ----------DSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQ--------------------- 258 (384)
T ss_pred ----------CeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhc---------------------
Confidence 3444 6799998865444567899999999999999999988654211
Q ss_pred CCCCCCccCccccccCccceEEEEEEeCCC-CchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhh
Q 002259 793 NDSNTNRVSPKRKKALKTTNAYFYWVTREQ-GSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALN 871 (946)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~-~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~ 871 (946)
.....++.|+|++|+. .++ .|.+++.++++. +.++++..+++..+....
T Consensus 259 --------------~~~~~~v~L~~G~R~~~~d~-ly~~el~~~~~~---~~~~l~~a~Sr~~~~~~~------------ 308 (384)
T cd06206 259 --------------GRKLAPALLFFGCRHPDHDD-LYRDELEEWEAA---GVVSVRRAYSRPPGGGCR------------ 308 (384)
T ss_pred --------------CCCcCCEEEEEeCCCCCccc-chHHHHHHHHHC---CCeEEEEEecccCCCCCE------------
Confidence 0113579999999998 555 678888888762 346666666542110000
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhhcC
Q 002259 872 HAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFNQK 934 (946)
Q Consensus 872 ~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~~~ 934 (946)
-+.+ .=+-+.+.+...+ . ....||+|||++|+++|++.+.+...+
T Consensus 309 -------yVq~------~i~~~~~~~~~~~-~----~~~~vyiCGp~~M~~~v~~~L~~i~~~ 353 (384)
T cd06206 309 -------YVQD------RLWAEREEVWELW-E----QGARVYVCGDGRMAPGVREVLKRIYAE 353 (384)
T ss_pred -------echh------hHHhhHHHHHHHH-H----CCcEEEEECCCchHHHHHHHHHHHHHH
Confidence 0000 0000111221111 1 235699999999999999999886543
No 77
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.53 E-value=7.6e-14 Score=158.65 Aligned_cols=189 Identities=14% Similarity=0.193 Sum_probs=124.0
Q ss_pred CCccCCCcEEEEEcCCCCCCccccceeccCCC--CCeEEEEEEEc----------CCchHHHHHHHhhcCCCCCCCCCCc
Q 002259 646 QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPG--DDYLSVHIRQL----------GDWTQELKRVFSEACEPPVAGKSGL 713 (946)
Q Consensus 646 ~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~G~~~~ 713 (946)
..++.||||+.+..|. ..++|||+|+|. .+.++++|+.. |-.|..|.++.. +|
T Consensus 129 ~~~~~~gq~l~l~~~~----~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~-------~G---- 193 (360)
T cd06199 129 PARLTAEELLDLLRPL----QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLK-------EG---- 193 (360)
T ss_pred CCCCCHHHHHHhCcCC----CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCC-------CC----
Confidence 3578899999887542 569999999995 46899998854 778887776531 23
Q ss_pred ccccccccCCCCEEEEeCccC-CCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCC
Q 002259 714 LRADETTKKSLPKLLIDGPYG-APAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGS 792 (946)
Q Consensus 714 ~~~~~~~~~~~~~v~idGPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (946)
..|.|.+|.| .+..+.....++||||||+||||++|++++.+...
T Consensus 194 -----------d~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~----------------------- 239 (360)
T cd06199 194 -----------DTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG----------------------- 239 (360)
T ss_pred -----------CEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-----------------------
Confidence 6789987554 55543344578999999999999999999876431
Q ss_pred CCCCCCccCccccccCccceEEEEEEeCCC-CchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhh
Q 002259 793 NDSNTNRVSPKRKKALKTTNAYFYWVTREQ-GSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALN 871 (946)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~-~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~ 871 (946)
...++.++|++|+. .++ .|.++++++++.. ..+.++..+++... ... ..|..-
T Consensus 240 ----------------~~~~~~L~~G~R~~~~D~-~y~~el~~~~~~~--~~~~~~~a~Sr~~~---~~~----yVq~~l 293 (360)
T cd06199 240 ----------------AKGKNWLFFGERHFATDF-LYQDELQQWLKDG--VLTRLDTAFSRDQA---EKV----YVQDRM 293 (360)
T ss_pred ----------------CCCcEEEEEcCCCCccch-hHHHHHHHHHHcC--CCeEEEEEEccCCC---CCc----cHHHHH
Confidence 13568999999997 455 6788888876532 23455555553211 000 000000
Q ss_pred cccCCCccccCCccccccCCCCHHHHHHHHHhhcCCCcEEEEEeCCh-hHHHHHHHHHHhhhc
Q 002259 872 HAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCNARIGVFYCGAP-VLAKELSKLCYEFNQ 933 (946)
Q Consensus 872 ~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~-~l~~~vr~~~~~~~~ 933 (946)
+-+..++.. ... +...||+|||+ .|+++|++++.++-.
T Consensus 294 -------------------~~~~~~~~~-~~~----~~~~vYvCG~~~~M~~~V~~~L~~i~~ 332 (360)
T cd06199 294 -------------------REQGAELWA-WLE----EGAHFYVCGDAKRMAKDVDAALLDIIA 332 (360)
T ss_pred -------------------HHhHHHHHH-HHh----CCCEEEEECCCccccHHHHHHHHHHHH
Confidence 000011111 111 12469999999 899999999887643
No 78
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.52 E-value=1.7e-13 Score=157.28 Aligned_cols=179 Identities=15% Similarity=0.221 Sum_probs=118.1
Q ss_pred CCccccceeccCCC--CCeEEEEEEEc-----------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEe
Q 002259 664 PFEWHPFSITSAPG--DDYLSVHIRQL-----------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLID 730 (946)
Q Consensus 664 ~~e~HPFTIas~p~--~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~id 730 (946)
..+.+||||+|+|. .+.++|+|+.. |-.|..|.++ ..| ..+.|.
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l--------~~G---------------d~v~v~ 217 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGL--------KVG---------------QRVTVF 217 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhc--------CCC---------------CEEEEE
Confidence 35779999999995 47899999865 6677777543 123 689999
Q ss_pred CccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCcc
Q 002259 731 GPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKT 810 (946)
Q Consensus 731 GPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (946)
||+|.+..+.....++||||||+|||||+|++++.....+. ....
T Consensus 218 ~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~-----------------------------------~~~~ 262 (382)
T cd06207 218 IKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQ-----------------------------------GPEI 262 (382)
T ss_pred EECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhc-----------------------------------CccC
Confidence 99998764434457899999999999999999987654211 0124
Q ss_pred ceEEEEEEeCCC-CchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCcccccc
Q 002259 811 TNAYFYWVTREQ-GSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHF 889 (946)
Q Consensus 811 ~~v~l~Wv~R~~-~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~ 889 (946)
.++.|+|++|+. .++ .|++++.++++.. ..+.++...++.... ... . .+.
T Consensus 263 ~~~~L~~G~R~~~~d~-~y~~el~~~~~~~--~~~~~~~a~Srd~~~---~~y----V-------------------q~~ 313 (382)
T cd06207 263 GPVLLYFGCRHEDKDY-LYKEELEEYEKSG--VLTTLGTAFSRDQPK---KVY----V-------------------QDL 313 (382)
T ss_pred CCEEEEECCCCCCccc-cHHHHHHHHHhCC--CCceEEEEecCCCCC---ceE----h-------------------HHH
Confidence 688999999998 665 7788888777632 234555554432110 000 0 000
Q ss_pred CCCCHHHHHHHHHhhcCCCcEEEEEeCChh-HHHHHHHHHHhhhc
Q 002259 890 ARPNWKKVLSKLSSKHCNARIGVFYCGAPV-LAKELSKLCYEFNQ 933 (946)
Q Consensus 890 gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~-l~~~vr~~~~~~~~ 933 (946)
.+-+.+.+.+.+. ++...||+|||+. |+++|++.+.+...
T Consensus 314 l~~~~~~~~~~l~----~~~~~vYvCG~~~~M~~~V~~~L~~~~~ 354 (382)
T cd06207 314 IRENSDLVYQLLE----EGAGVIYVCGSTWKMPPDVQEAFEEILK 354 (382)
T ss_pred HHHCHHHHHHHHh----cCCCEEEEECCcccccHHHHHHHHHHHH
Confidence 0111122222221 1224699999998 99999999988654
No 79
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=1.8e-13 Score=136.47 Aligned_cols=135 Identities=15% Similarity=0.155 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc--CCCcccHHHhhhhhCCC-------
Q 002259 151 ALAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA--KGGFLYRADFAQCIGMR------- 221 (946)
Q Consensus 151 ~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l~~~------- 221 (946)
..+..+++++|..||.+++|.++..++..+++.++..++..+ +...+...| +||.|+++||..++...
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~e---l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEE---LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHH---HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc
Confidence 345678899999999999999999999999999987766644 555555556 89999999999998432
Q ss_pred -CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 222 -DSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 222 -~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
...+.+.++|+ ++|.|++ |+||.+||+.++..++...++++++.+++.+|.|+||.|+++||.++|.
T Consensus 81 ~~~~~el~eaF~-~fD~d~~--G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 81 EASSEELKEAFR-VFDKDGD--GFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred cccHHHHHHHHH-HHccCCC--CcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 12347888999 5668887 9999999999999999999999999999999999999999999999985
No 80
>PTZ00183 centrin; Provisional
Probab=99.49 E-value=6.2e-13 Score=132.93 Aligned_cols=139 Identities=16% Similarity=0.266 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHhccc--CCCcccHHHhhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-cCCChH
Q 002259 190 VDAWNEVQSNFNKLA--KGGFLYRADFAQCI---GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQI-TDQSFD 263 (946)
Q Consensus 190 ~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l-~~~~~~ 263 (946)
..+..++.+.|..+| ++|.|+.+||..++ |.......+..+|.. .|.+++ |.|+++||+.++... .....+
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~-~d~~~~--g~i~~~eF~~~~~~~~~~~~~~ 89 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIAD-VDKDGS--GKIDFEEFLDIMTKKLGERDPR 89 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH-hCCCCC--CcEeHHHHHHHHHHHhcCCCcH
Confidence 345577888888877 78889999987766 444565677888884 446666 999999999987754 344567
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCC
Q 002259 264 SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDT 339 (946)
Q Consensus 264 ~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~ 339 (946)
+.++.+|+.+|.|++|.|+.+||..++.... ..++ + +.+..+|..+|.|++|.|+++||..++...|.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~--~~l~--~----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELG--ETIT--D----EELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--CCCC--H----HHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 7899999999999999999999999997432 2233 2 33556788999999999999999999998884
No 81
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.48 E-value=2.3e-13 Score=163.91 Aligned_cols=126 Identities=12% Similarity=0.193 Sum_probs=94.9
Q ss_pred CccCCCcEEEEEcCCCCCCccccceeccCCC--CCeEEEEEEEc----------CCchHHHHHHHhhcCCCCCCCCCCcc
Q 002259 647 FRYKSGQYMFVQCPAVSPFEWHPFSITSAPG--DDYLSVHIRQL----------GDWTQELKRVFSEACEPPVAGKSGLL 714 (946)
Q Consensus 647 ~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~G~~~~~ 714 (946)
.++.||||+.+..| .+.|||||+|+|. ++.+.|+|+.. |..|..|.+.+. +|
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~-------~G----- 430 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLK-------EG----- 430 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCC-------CC-----
Confidence 46899999988876 3679999999984 56899999864 888988876432 23
Q ss_pred cccccccCCCCEEEEeCccC-CCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCC
Q 002259 715 RADETTKKSLPKLLIDGPYG-APAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSN 793 (946)
Q Consensus 715 ~~~~~~~~~~~~v~idGPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (946)
..|.|.||.| .+..+.....++||||+|+|||||+++++++....
T Consensus 431 ----------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------------------------ 476 (597)
T TIGR01931 431 ----------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG------------------------ 476 (597)
T ss_pred ----------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc------------------------
Confidence 6788988655 55433344568999999999999999999876431
Q ss_pred CCCCCccCccccccCccceEEEEEEeCC-CCchhhHHHHHHHHHhH
Q 002259 794 DSNTNRVSPKRKKALKTTNAYFYWVTRE-QGSFDWFKGVMNEVAEL 838 (946)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~v~l~Wv~R~-~~~~~wf~~~L~el~e~ 838 (946)
...++.|+|++|+ ..++ .|.++|..+.+.
T Consensus 477 ---------------~~g~~~LffG~R~~~~D~-ly~~El~~~~~~ 506 (597)
T TIGR01931 477 ---------------AKGKNWLFFGNPHFTTDF-LYQVEWQNYLKK 506 (597)
T ss_pred ---------------CCCCEEEEECCCCCCcch-hHHHHHHHHHHc
Confidence 1356899999998 5565 567777766543
No 82
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.47 E-value=2.8e-13 Score=130.23 Aligned_cols=122 Identities=23% Similarity=0.370 Sum_probs=90.2
Q ss_pred hhhhhhHHHHHHHhhhhh-hhhhhcccccCccccCcchhhHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHh
Q 002259 426 AETLKFNMALILLPVCRN-TITWLRSTRLGFFVPFDDNINFHKTIAAAIVVGVILHVGNHLACDFPRLISSSESDYHRYL 504 (946)
Q Consensus 426 a~~~~~n~~lill~~~Rn-~l~~Lr~~~~~~~ip~d~~~~fHk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~~~~~~~l 504 (946)
|.+...|+++++++++|| .+.+++ ++|+|+.+.+|||+|+++++++++|+++|+..... ... ...
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~------~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~-~~~---~~~---- 67 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLT------GISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLR-FGG---WDW---- 67 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh---hch----
Confidence 556678999999999998 455454 47899999999999999999999999999842211 000 000
Q ss_pred hhhhCCCCCchhhhcccchhhHHHHHHHHHHHHHHHhhHHHHhhccCCCCCccccccchhHHHHHHHHHHHHHHH
Q 002259 505 SSSFGKHKPTYWDLVKGAEGITGILMVIFMAIAFILATRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIVYILL 579 (946)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~~ill 579 (946)
...+..........+|+++++++++++++|.+++||+. .||.|+++|++++++++++
T Consensus 68 -------~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~-----------~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 68 -------QEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRR-----------NYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred -------hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHH
Confidence 00011122233457999999999999999999999553 6999999999998887653
No 83
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=6.2e-13 Score=127.39 Aligned_cols=133 Identities=17% Similarity=0.314 Sum_probs=92.8
Q ss_pred HHHHHHHhccc--CCCcccHHHhhhh---hCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-HhcCCChHHHHH
Q 002259 194 NEVQSNFNKLA--KGGFLYRADFAQC---IGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWS-QITDQSFDSRLQ 267 (946)
Q Consensus 194 ~~l~~~F~~ld--~dG~I~~~eF~~~---l~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~-~l~~~~~~~~l~ 267 (946)
++++..|+.++ ++|+|+.+|+..+ +|....++.+. +++.|.|.++.|.|+|++|+..+. .++...+.++++
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~---kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEIL---KLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHH---HHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 44555555555 6667777777333 35555544433 444455555568999999988866 466777888899
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 002259 268 IFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQK 337 (946)
Q Consensus 268 ~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~ 337 (946)
.+|+.+|.|++|.|+..+|+.++... +. .+. ++.+..|++++|.|+||.|+-+||..+|..-
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeL-ge-nlt------D~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKEL-GE-NLT------DEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHh-Cc-ccc------HHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 99999999999999999998888642 21 222 3345567888999999999999998887653
No 84
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.44 E-value=7.7e-13 Score=123.98 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHhccc---------C----CCcccHHHhhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 002259 190 VDAWNEVQSNFNKLA---------K----GGFLYRADFAQCIGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQ 256 (946)
Q Consensus 190 ~~~~~~l~~~F~~ld---------~----dG~I~~~eF~~~l~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~ 256 (946)
...+.++.++|..+. + .-++.++...++..++++ ++.+++.+++. +||+ |.++|++|+.+++.
T Consensus 24 rKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELken-pfk~ri~e~FS-eDG~--GnlsfddFlDmfSV 99 (189)
T KOG0038|consen 24 RKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKEN-PFKRRICEVFS-EDGR--GNLSFDDFLDMFSV 99 (189)
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcC-hHHHHHHHHhc-cCCC--CcccHHHHHHHHHH
Confidence 345566777777765 1 125677777777666666 78888888554 8888 99999999999999
Q ss_pred hcCCCh-HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 257 ITDQSF-DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 257 l~~~~~-~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
+++..+ +-++.-+|+.||-|+|+.|..+++..++... ..+.++ +++.+-+++.+++|+|.|+||.+++.||+.++.
T Consensus 100 ~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l-Tr~eLs--~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 100 FSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL-TRDELS--DEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH-hhccCC--HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 887655 4478899999999999999999999999753 345666 778899999999999999999999999999999
Q ss_pred hCCCcc
Q 002259 336 QKDTYL 341 (946)
Q Consensus 336 ~~p~~~ 341 (946)
+.|.|+
T Consensus 177 raPDFl 182 (189)
T KOG0038|consen 177 RAPDFL 182 (189)
T ss_pred hCcchH
Confidence 999763
No 85
>PTZ00184 calmodulin; Provisional
Probab=99.41 E-value=4.5e-12 Score=125.12 Aligned_cols=136 Identities=15% Similarity=0.285 Sum_probs=107.0
Q ss_pred ChhhHHHHHHHHhccc--CCCcccHHHhhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-cCCCh
Q 002259 189 GVDAWNEVQSNFNKLA--KGGFLYRADFAQCI---GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQI-TDQSF 262 (946)
Q Consensus 189 ~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l-~~~~~ 262 (946)
...+.+++.+.|..+| ++|.|+.+||..++ +.....+.+..+|+. .|.+++ |.|+++||+.++... .....
T Consensus 6 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~d~~~~--g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE-VDADGN--GTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred CHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHh-cCcCCC--CcCcHHHHHHHHHHhccCCcH
Confidence 3455677888888888 89999999998775 445566678888884 446666 999999999988764 33456
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 263 DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 263 ~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
.+.++.+|+.||.|++|+|+.+||..++.... ..++ ++.++.+|+.+|.|++|.|+++||..++.
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLG--EKLT------DEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC--CCCC------HHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 67899999999999999999999999997531 1222 23455678899999999999999998875
No 86
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.4e-12 Score=123.41 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=116.7
Q ss_pred CcHHHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc--CCCcccHHHhhhhh----CCCC
Q 002259 149 DSALAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA--KGGFLYRADFAQCI----GMRD 222 (946)
Q Consensus 149 ~~~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l----~~~~ 222 (946)
.++.+.++.++.|..||.+++|.+.+.++--.++.+|--... .++.+.....| +.|.|++++|...+ +..+
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k---~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKK---EEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcch---HHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 345566889999999999999999999997777666533333 45666666666 78999999998875 6667
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 223 SKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 223 ~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
+.+.+..+|+ ++|.|.+ |+|++.+|+.++..|+++.+++++++|++.+|.|+||-|+.+||..+|+
T Consensus 104 t~eEi~~afr-l~D~D~~--Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFR-LFDDDKT--GKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHH-cccccCC--CCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 8899999999 6667777 9999999999999999999999999999999999999999999999986
No 87
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.41 E-value=7.6e-12 Score=144.19 Aligned_cols=135 Identities=18% Similarity=0.230 Sum_probs=93.2
Q ss_pred CCccccceeccCCCC--CeEEEEEEEc-----CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeC-ccCC
Q 002259 664 PFEWHPFSITSAPGD--DYLSVHIRQL-----GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDG-PYGA 735 (946)
Q Consensus 664 ~~e~HPFTIas~p~~--~~l~l~Ir~~-----G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idG-PyG~ 735 (946)
..+.|+|||+|+|.. +.++|+|+.. |-.|..|.++..... ..| ..+.+.| |.|.
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~---~~G---------------~~v~i~~~~~g~ 232 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSAS---SHG---------------VKVPFYLRSSSR 232 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhc---CCC---------------CEEEEEEecCCC
Confidence 347799999999964 7899988874 668888887643210 022 6788888 6776
Q ss_pred CCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEE
Q 002259 736 PAQDYR-NYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAY 814 (946)
Q Consensus 736 ~~~~~~-~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 814 (946)
+..+.. ...++||||+|+||||+++++++......+. ......++.
T Consensus 233 F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~---------------------------------~~~~~~~~~ 279 (398)
T cd06203 233 FRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESH---------------------------------TETVFGEAW 279 (398)
T ss_pred cCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhc---------------------------------ccCCCCCEE
Confidence 654333 4578999999999999999999876532110 011246789
Q ss_pred EEEEeCCC-CchhhHHHHHHHHHhHcCCCeEEEEEEEec
Q 002259 815 FYWVTREQ-GSFDWFKGVMNEVAELDQRGVIEMHNYLTS 852 (946)
Q Consensus 815 l~Wv~R~~-~~~~wf~~~L~el~e~~~~~~i~i~~yvT~ 852 (946)
|+|++|+. .++ .|.++++++++... ...++..+++
T Consensus 280 Lf~G~R~~~~d~-~y~~El~~~~~~~~--~~~~~~a~SR 315 (398)
T cd06203 280 LFFGCRHRDRDY-LFRDELEEFLEEGI--LTRLIVAFSR 315 (398)
T ss_pred EEEeCCCCCcch-hHHHHHHHHHHcCC--CceEEEEECC
Confidence 99999998 565 67888888776432 2344444443
No 88
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.38 E-value=6e-12 Score=130.66 Aligned_cols=217 Identities=17% Similarity=0.331 Sum_probs=140.1
Q ss_pred EEEEEEECCC--CCccCCCcEEEEEcCCCC--------------CC---------------ccccceeccCCCC-CeEEE
Q 002259 636 VLTLQMSRPP--QFRYKSGQYMFVQCPAVS--------------PF---------------EWHPFSITSAPGD-DYLSV 683 (946)
Q Consensus 636 v~~l~l~~p~--~~~~~pGQ~v~l~~p~~s--------------~~---------------e~HPFTIas~p~~-~~l~l 683 (946)
+.+|.+..|. ..+|+||-|+.|.+|.-. -| -.+.||++|-|++ +.+.|
T Consensus 149 IKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~giI~~ 228 (410)
T COG2871 149 IKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEKGIIKL 228 (410)
T ss_pred hhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhcCeEEE
Confidence 4456666554 578999999999998531 01 1256888888864 56778
Q ss_pred EEEEcCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHH
Q 002259 684 HIRQLGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILK 763 (946)
Q Consensus 684 ~Ir~~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~ 763 (946)
-||....--.. ...| +|.- ..=--+-+..++|.|.||||.+.. -+....+|+|+||.|.+|+.|.+-
T Consensus 229 NvRIAtPPp~~-------~~~P--pG~m---SSyi~sLKpGDKvtisGPfGEfFa-KdtdaemvFigGGAGmapmRSHIf 295 (410)
T COG2871 229 NVRIATPPPRN-------PDAP--PGQM---SSYIWSLKPGDKVTISGPFGEFFA-KDTDAEMVFIGGGAGMAPMRSHIF 295 (410)
T ss_pred EEEeccCCCCC-------CCCC--ccce---eeeEEeecCCCeEEEeccchhhhh-ccCCCceEEEecCcCcCchHHHHH
Confidence 88865210000 0000 1100 000001123589999999999863 345567999999999999999999
Q ss_pred HHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhhHHHHHHHHHhHcCCCe
Q 002259 764 DLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGV 843 (946)
Q Consensus 764 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~ 843 (946)
+++.+.+. .|++.|.|..|+.... .+.+..++|+... .+
T Consensus 296 DqL~rlhS--------------------------------------kRkis~WYGARS~rE~-fY~Ed~d~L~ae~--pN 334 (410)
T COG2871 296 DQLKRLHS--------------------------------------KRKISFWYGARSLREM-FYQEDFDQLQAEN--PN 334 (410)
T ss_pred HHHHhhcc--------------------------------------cceeeeeeccchHHHh-HHHHHHHHHHhhC--CC
Confidence 98876431 5899999999998875 5666777776654 35
Q ss_pred EEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHHHHhhcCC-CcEEEEEeCChhHHH
Q 002259 844 IEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSKLSSKHCN-ARIGVFYCGAPVLAK 922 (946)
Q Consensus 844 i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~~~~~~~~-~~v~V~~CGP~~l~~ 922 (946)
+.-|+-++....++. .+|..--+| ..+.....+.|+. ++...|+||||-|..
T Consensus 335 F~wH~aLSdplpEDn---------------------W~g~TgFih------nv~~en~Lk~h~aPEDceyYmCGPp~mNa 387 (410)
T COG2871 335 FHWHLALSDPLPEDN---------------------WDGYTGFIH------NVLYENYLKDHEAPEDCEYYMCGPPLMNA 387 (410)
T ss_pred cEEEEEecCCCCcCC---------------------cccchhHHH------HHHHhhhhhcCCCchheeEEeeCcchhhH
Confidence 777877765543321 112110111 1222333444543 678999999999999
Q ss_pred HHHHHHHhhhc
Q 002259 923 ELSKLCYEFNQ 933 (946)
Q Consensus 923 ~vr~~~~~~~~ 933 (946)
.|-+.+.+++.
T Consensus 388 svikmL~dlGV 398 (410)
T COG2871 388 SVIKMLKDLGV 398 (410)
T ss_pred HHHHHHHhcCc
Confidence 99999998754
No 89
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=99.36 E-value=7.3e-13 Score=117.12 Aligned_cols=99 Identities=65% Similarity=1.110 Sum_probs=74.5
Q ss_pred hhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhcccCCCcccHHHhhhhhCCCCCHHHHHHHHHHHHhhCCCCC
Q 002259 163 QLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLAKGGFLYRADFAQCIGMRDSKEFALELFDALSRRRRLKV 242 (946)
Q Consensus 163 ~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld~dG~I~~~eF~~~l~~~~~~~~~~~lF~~l~d~d~d~~ 242 (946)
++||.+||+..|+++++||.+.. .+.++|.+|+++|+++..||+|.+++|.+|+||+++++++.+||++|.++.+...
T Consensus 1 rldRt~S~A~~ALkGLrFIskt~--~~~~~W~~VE~RFd~La~dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~ 78 (100)
T PF08414_consen 1 RLDRTKSGAQRALKGLRFISKTT--GGADGWKEVEKRFDKLAKDGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKG 78 (100)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-BTTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--S
T ss_pred CCCcchhHHHHHHhcccceecCC--CCccCHHHHHHHHHHhCcCCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCcc
Confidence 47899999999999999999753 2345799999999999999999999999999999999999999999998887777
Q ss_pred CcccHHHHHHHHHHhcCCChH
Q 002259 243 DKISREELYEYWSQITDQSFD 263 (946)
Q Consensus 243 G~Is~~Ef~~~l~~l~~~~~~ 263 (946)
+.|+.+|+.++|.++.+++.|
T Consensus 79 ~~I~k~eL~efW~qisD~sFD 99 (100)
T PF08414_consen 79 DSITKDELKEFWEQISDQSFD 99 (100)
T ss_dssp SEE-HHHHHHHHHHHH---HH
T ss_pred CCcCHHHHHHHHHHhhccCCC
Confidence 899999999999999887754
No 90
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.34 E-value=2.5e-11 Score=140.67 Aligned_cols=196 Identities=17% Similarity=0.236 Sum_probs=117.0
Q ss_pred CCccccceeccCCC--CCeEEEEEEEc-----------CCchHHHHHHHhhcCC--CCCCCCCCcccccccccCCCCEEE
Q 002259 664 PFEWHPFSITSAPG--DDYLSVHIRQL-----------GDWTQELKRVFSEACE--PPVAGKSGLLRADETTKKSLPKLL 728 (946)
Q Consensus 664 ~~e~HPFTIas~p~--~~~l~l~Ir~~-----------G~~T~~L~~~~~~~~~--~~~~G~~~~~~~~~~~~~~~~~v~ 728 (946)
..+.++|||+|+|. .+.+++.|+.. |-.|..|.++...... .+.. . .+... ........|.
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~--~-~~~~~-~~~~~g~~v~ 250 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTP--Y-YLSGP-RKKGGGSKVP 250 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccc--c-ccccc-cccCCCCeEE
Confidence 34789999999995 46788877743 6677888776531100 0000 0 00000 0001236788
Q ss_pred EeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccC
Q 002259 729 IDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKAL 808 (946)
Q Consensus 729 idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (946)
+.+|.|.+..+.....++||||||+||||++|++++....... ..
T Consensus 251 v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~-----------------------------------~~ 295 (416)
T cd06204 251 VFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKES-----------------------------------GK 295 (416)
T ss_pred EEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhc-----------------------------------cC
Confidence 8889998764444457899999999999999999987643211 00
Q ss_pred ccceEEEEEEeCCC-CchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCcccc
Q 002259 809 KTTNAYFYWVTREQ-GSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRT 887 (946)
Q Consensus 809 ~~~~v~l~Wv~R~~-~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~ 887 (946)
...++.|+|++|+. .++ .|.++++++++.. ..+.++..+++... .... .|.. +
T Consensus 296 ~~~~v~L~~G~R~~~~d~-ly~~el~~~~~~~--~~~~l~~a~Sr~~~---~k~y----Vq~~---------i------- 349 (416)
T cd06204 296 KVGPTLLFFGCRHPDEDF-IYKDELEEYAKLG--GLLELVTAFSREQP---KKVY----VQHR---------L------- 349 (416)
T ss_pred ccCCEEEEEcCCCCCccc-chHHHHHHHHHcC--CceEEEEEECcCCC---CCcc----hHHH---------H-------
Confidence 13578999999998 565 5778888776632 34555555553211 0000 0000 0
Q ss_pred ccCCCCHHHHHHHHHhhcCCCcEEEEEeCChh-HHHHHHHHHHhhh
Q 002259 888 HFARPNWKKVLSKLSSKHCNARIGVFYCGAPV-LAKELSKLCYEFN 932 (946)
Q Consensus 888 ~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~-l~~~vr~~~~~~~ 932 (946)
+-+...+...+. +...||+|||+. |+++|++.+.+.-
T Consensus 350 ---~~~~~~~~~~l~-----~~~~vYvCGp~~~M~~~V~~~L~~i~ 387 (416)
T cd06204 350 ---AEHAEQVWELIN-----EGAYIYVCGDAKNMARDVEKTLLEIL 387 (416)
T ss_pred ---HHhHHHHHHHHH-----cCCEEEEECCcccchHHHHHHHHHHH
Confidence 001112222121 125699999998 9999999988764
No 91
>PRK06214 sulfite reductase; Provisional
Probab=99.34 E-value=2.5e-11 Score=142.76 Aligned_cols=126 Identities=16% Similarity=0.310 Sum_probs=85.3
Q ss_pred CCccccceeccCCC--CCeEEEEEEEc----------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeC
Q 002259 664 PFEWHPFSITSAPG--DDYLSVHIRQL----------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDG 731 (946)
Q Consensus 664 ~~e~HPFTIas~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idG 731 (946)
+.+.|||||+|+|. .+.++|+|+.. |..|..|.+.+. .|. ...+.+.+
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~-------~Gd-------------~V~v~i~~ 372 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLA-------PGT-------------RVRVYVQK 372 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCC-------CCC-------------EEEEEecC
Confidence 35789999999985 57899999864 667777764321 231 13444566
Q ss_pred ccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccc
Q 002259 732 PYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTT 811 (946)
Q Consensus 732 PyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (946)
|+| +..+.....++||||+|+|||||+|++++.+... ...
T Consensus 373 ~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~---------------------------------------~~g 412 (530)
T PRK06214 373 AHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATK---------------------------------------APG 412 (530)
T ss_pred CCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc---------------------------------------CCC
Confidence 777 5443344568999999999999999999765431 124
Q ss_pred eEEEEEEeCCCC-chhhHHHHHHHHHhHcCCCeEEEEEEEec
Q 002259 812 NAYFYWVTREQG-SFDWFKGVMNEVAELDQRGVIEMHNYLTS 852 (946)
Q Consensus 812 ~v~l~Wv~R~~~-~~~wf~~~L~el~e~~~~~~i~i~~yvT~ 852 (946)
++.|+|.+|... ++ .|.++|+++.+.. ....++...++
T Consensus 413 ~~~LffG~R~~~~D~-ly~dEL~~l~~~g--~l~~l~~afSR 451 (530)
T PRK06214 413 RNWLFFGHQRSATDF-FYEDELNGLKAAG--VLTRLSLAWSR 451 (530)
T ss_pred CeEEEEEecCChhhh-HHHHHHHHHHHhC--CceEEEEEEec
Confidence 678999997654 44 6788888887643 22334444443
No 92
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.32 E-value=3.3e-11 Score=139.20 Aligned_cols=182 Identities=16% Similarity=0.196 Sum_probs=109.2
Q ss_pred CccccceeccCCC--CCeEEEEEEEc-------------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEE
Q 002259 665 FEWHPFSITSAPG--DDYLSVHIRQL-------------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLI 729 (946)
Q Consensus 665 ~e~HPFTIas~p~--~~~l~l~Ir~~-------------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~i 729 (946)
.+.++|||+|+|. .+.+.+.|+.. |-.|..|.++ .+| ..|.|
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l--------~~G---------------d~v~v 231 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGL--------TPG---------------DTVPC 231 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhC--------CCC---------------CEEEE
Confidence 3679999999985 46677776652 6677777543 123 56777
Q ss_pred eCccC-CCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccC
Q 002259 730 DGPYG-APAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKAL 808 (946)
Q Consensus 730 dGPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (946)
.+|.| .+..+-....++||||+|+|||||+|++++.....+... ....
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~-------------------------------~~~~ 280 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSE-------------------------------DPGK 280 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcc-------------------------------cccC
Confidence 66543 343333345689999999999999999998654321000 0011
Q ss_pred ccceEEEEEEeCCC-CchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCcccc
Q 002259 809 KTTNAYFYWVTREQ-GSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRT 887 (946)
Q Consensus 809 ~~~~v~l~Wv~R~~-~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~ 887 (946)
...++.|++++|+. .++ .|+++++++.+.. ...+++..+++... ..+.- .|.. +
T Consensus 281 ~~g~v~L~~G~R~~~~d~-ly~~El~~~~~~~--~~~~~~~a~SR~~~--~~k~y----Vq~~---------l------- 335 (406)
T cd06202 281 KFGDMTLFFGCRNSTIDD-IYKEETEEAKNKG--VLTEVYTALSREPG--KPKTY----VQDL---------L------- 335 (406)
T ss_pred CCCCEEEEEcCCCCCccc-chHHHHHHHHHcC--CCceEEEEEcCCCC--CCCee----hhhH---------H-------
Confidence 24689999999998 555 6788888776532 23345555554211 00000 0000 0
Q ss_pred ccCCCCHHHHHHHHHhhcCCCcEEEEEeCChhHHHHHHHHHHhhh
Q 002259 888 HFARPNWKKVLSKLSSKHCNARIGVFYCGAPVLAKELSKLCYEFN 932 (946)
Q Consensus 888 ~~gRPd~~~v~~~~~~~~~~~~v~V~~CGP~~l~~~vr~~~~~~~ 932 (946)
+-+-+.+.+-+. .....||+|||+.|+++|++.+.+.-
T Consensus 336 ---~~~~~~v~~~l~----~~~~~iYvCG~~~M~~~V~~~L~~i~ 373 (406)
T cd06202 336 ---KEQAESVYDALV----REGGHIYVCGDVTMAEDVSQTIQRIL 373 (406)
T ss_pred ---HHhHHHHHHHHH----hCCCEEEEeCCCchHHHHHHHHHHHH
Confidence 000111111111 12356999999999999999887754
No 93
>PTZ00183 centrin; Provisional
Probab=99.30 E-value=7e-11 Score=118.09 Aligned_cols=137 Identities=21% Similarity=0.234 Sum_probs=113.1
Q ss_pred CcHHHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc--CCCcccHHHhhhhhC----CCC
Q 002259 149 DSALAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA--KGGFLYRADFAQCIG----MRD 222 (946)
Q Consensus 149 ~~~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l~----~~~ 222 (946)
-++.+..+..+.|..+|.+++|.++..++..++...+..... ..+...|..+| ++|.|+++||..++. ...
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~---~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKK---EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCH---HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 445666788999999999999999999999998876543333 34666666666 899999999988752 234
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 223 SKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 223 ~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
.++.++++|+. .|.+++ |.|+.+||..++..++....+++++.+|..+|.|++|.|+++||.+++.
T Consensus 88 ~~~~l~~~F~~-~D~~~~--G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 88 PREEILKAFRL-FDDDKT--GKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred cHHHHHHHHHH-hCCCCC--CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 55678889994 557777 9999999999999888888899999999999999999999999999885
No 94
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.26 E-value=2.5e-11 Score=113.71 Aligned_cols=107 Identities=23% Similarity=0.408 Sum_probs=71.4
Q ss_pred EEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeCCCCchhh
Q 002259 748 LVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTREQGSFDW 827 (946)
Q Consensus 748 lIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R~~~~~~w 827 (946)
|||||+||||++|++++++.+. ..++++|+|++|+.+++ .
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~---------------------------------------~~~~v~l~~~~r~~~~~-~ 40 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN---------------------------------------DNRKVTLFYGARTPEDL-L 40 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT---------------------------------------CTSEEEEEEEESSGGGS-T
T ss_pred CeecceeHHHHHHHHHHHHHhC---------------------------------------CCCCEEEEEEEcccccc-c
Confidence 7999999999999999998762 15799999999999997 7
Q ss_pred HHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHH-HHHHh-hc
Q 002259 828 FKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVL-SKLSS-KH 905 (946)
Q Consensus 828 f~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~-~~~~~-~~ 905 (946)
|.+++.++++.... .+.+ +.+.....+. .+ +.|| +.+.+ ++... ..
T Consensus 41 ~~~~l~~~~~~~~~-~~~~--~~~~~~~~~~----------------------~~-----~~g~--v~~~~~~~~~~~~~ 88 (109)
T PF00175_consen 41 FRDELEALAQEYPN-RFHV--VYVSSPDDGW----------------------DG-----FKGR--VTDLLLEDLLPEKI 88 (109)
T ss_dssp THHHHHHHHHHSTT-CEEE--EEETTTTSST----------------------TS-----EESS--HHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhccc-cccc--cccccccccc----------------------CC-----ceee--hhHHHHHhhccccc
Confidence 88889888876544 3333 2221111100 00 1112 22333 33332 22
Q ss_pred CCCcEEEEEeCChhHHHHHHH
Q 002259 906 CNARIGVFYCGAPVLAKELSK 926 (946)
Q Consensus 906 ~~~~v~V~~CGP~~l~~~vr~ 926 (946)
...+..||+|||++|++++++
T Consensus 89 ~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 89 DPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp CTTTEEEEEEEEHHHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHhcC
Confidence 245688999999999999975
No 95
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.23 E-value=8.4e-11 Score=141.20 Aligned_cols=125 Identities=10% Similarity=0.151 Sum_probs=90.3
Q ss_pred ccCCCcEEEEEcCCCCCCccccceeccCCC--CCeEEEEEEE----------cCCchHHHHHHHhhcCCCCCCCCCCccc
Q 002259 648 RYKSGQYMFVQCPAVSPFEWHPFSITSAPG--DDYLSVHIRQ----------LGDWTQELKRVFSEACEPPVAGKSGLLR 715 (946)
Q Consensus 648 ~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~--~~~l~l~Ir~----------~G~~T~~L~~~~~~~~~~~~~G~~~~~~ 715 (946)
++.||||+-+..|- +.++|||+|+|. ++.+.|.|+. .|..|..|.+.+ .+|
T Consensus 371 ~~~~~q~l~ll~~l----~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l-------~~G------ 433 (600)
T PRK10953 371 QLDAEQLIGLLRPL----TPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRL-------EEE------ 433 (600)
T ss_pred CCCHHHHHHhCCCC----CCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcC-------CCC------
Confidence 57899998888653 579999999984 4566666543 244566665432 123
Q ss_pred ccccccCCCCEEEEeCccC-CCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCC
Q 002259 716 ADETTKKSLPKLLIDGPYG-APAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSND 794 (946)
Q Consensus 716 ~~~~~~~~~~~v~idGPyG-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (946)
..|.|.||.| .+..+.....++||||+|+|||||++++++.....
T Consensus 434 ---------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------------------------- 479 (600)
T PRK10953 434 ---------GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG------------------------- 479 (600)
T ss_pred ---------CEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-------------------------
Confidence 6899999886 45443344578999999999999999999775431
Q ss_pred CCCCccCccccccCccceEEEEEEeCC-CCchhhHHHHHHHHHhH
Q 002259 795 SNTNRVSPKRKKALKTTNAYFYWVTRE-QGSFDWFKGVMNEVAEL 838 (946)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~v~l~Wv~R~-~~~~~wf~~~L~el~e~ 838 (946)
...++.|+|++|+ ..++ .|+++++++.+.
T Consensus 480 --------------~~~~~~LffG~R~~~~D~-lY~~El~~~~~~ 509 (600)
T PRK10953 480 --------------APGKNWLFFGNPHFTEDF-LYQVEWQRYVKE 509 (600)
T ss_pred --------------CCCCeEEEeeccCCccch-hHHHHHHHHHHc
Confidence 1356899999998 5555 788888877654
No 96
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.20 E-value=2.5e-10 Score=115.59 Aligned_cols=158 Identities=17% Similarity=0.168 Sum_probs=122.3
Q ss_pred HHHHHHHhhccCCCchhchhhHhhhhhccC-CCCChhhHHHHHHHHhcccCCCcccHHHhhhhhCCCCCHHHHHHHHHHH
Q 002259 156 ALRKQRAQLDRTRSGAQKALRGLRFISNSS-KTNGVDAWNEVQSNFNKLAKGGFLYRADFAQCIGMRDSKEFALELFDAL 234 (946)
Q Consensus 156 ~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~-~~~~~~~~~~l~~~F~~ld~dG~I~~~eF~~~l~~~~~~~~~~~lF~~l 234 (946)
.+...|...|+|++|.|++.|+...+...+ .....+...-+..+|+. +.+|+|.++||.++...- ..++.+|+.+
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~-~~~G~i~f~EF~~Lw~~i---~~Wr~vF~~~ 133 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDR-DNSGTIGFKEFKALWKYI---NQWRNVFRTY 133 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-CCCCccCHHHHHHHHHHH---HHHHHHHHhc
Confidence 567799999999999999999999887331 22333343444444442 189999999999987432 2367788843
Q ss_pred HhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Q 002259 235 SRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIM 314 (946)
Q Consensus 235 ~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if 314 (946)
|+|+. |.|+..||..++..++-..+++-.+.+++.||.-++|.|.+++|.+++... ... ...|
T Consensus 134 -D~D~S--G~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------------~~l-t~~F 196 (221)
T KOG0037|consen 134 -DRDRS--GTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------------QRL-TEAF 196 (221)
T ss_pred -ccCCC--CcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------------HHH-HHHH
Confidence 35554 999999999999999999999999999999998889999999998888521 111 2469
Q ss_pred HHcCCCCCCc--ccHHHHHHHH
Q 002259 315 EELDPEGLGY--IELWQLETLL 334 (946)
Q Consensus 315 ~e~D~d~dG~--Is~eEF~~ll 334 (946)
++.|.+.+|. |+|++|..+.
T Consensus 197 r~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 197 RRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred HHhccccceeEEEeHHHHHHHh
Confidence 9999999987 6788888764
No 97
>PTZ00184 calmodulin; Provisional
Probab=99.18 E-value=3.9e-10 Score=111.26 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc--CCCcccHHHhhhhhCC----CCCH
Q 002259 151 ALAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA--KGGFLYRADFAQCIGM----RDSK 224 (946)
Q Consensus 151 ~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l~~----~~~~ 224 (946)
+.+..+.++.|..+|.+++|.++..++..++...+..... ..+...|..++ ++|.|+++||..++.. ....
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~---~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTE---AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCH---HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHH
Confidence 4455678899999999999999999999988766543333 45667777666 8999999999987642 2334
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 225 EFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 225 ~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
+.+..+|+ ..|.+++ |.|+.+||..++..++....++.++.+|+.+|.|++|.|+++||..++.
T Consensus 84 ~~~~~~F~-~~D~~~~--g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFK-VFDRDGN--GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHH-hhCCCCC--CeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 56778888 4557776 9999999999999887777888999999999999999999999998774
No 98
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.07 E-value=3.6e-09 Score=101.01 Aligned_cols=130 Identities=15% Similarity=0.282 Sum_probs=106.4
Q ss_pred hhHHHHHHHHhccc--CCCcccHHHhhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-HhcCCChHH
Q 002259 191 DAWNEVQSNFNKLA--KGGFLYRADFAQCI---GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWS-QITDQSFDS 264 (946)
Q Consensus 191 ~~~~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~-~l~~~~~~~ 264 (946)
.++++++++|..+| +||.|+.+++...+ |...++++++.++. ... |.|+|.-|+.++- .|....+++
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~-----Ea~--gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK-----EAP--GPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH-----hCC--CCeeHHHHHHHHHHHhcCCCHHH
Confidence 45688999999888 89999999988775 66667667776665 233 9999999999876 566778889
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
.+..+|++||.+++|.|..+.|+++|.. .+++++ ++.++.|+..+=+|..|.|+|.+|..++.
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt--~gDr~~------~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTT--MGDRFT------DEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHH--hcccCC------HHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999975 334555 34466778889999999999999999987
No 99
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.06 E-value=4.1e-10 Score=103.79 Aligned_cols=91 Identities=25% Similarity=0.513 Sum_probs=73.9
Q ss_pred eEEEEEEEEecCCEEEEEEECCC---CCccCCCcEEEEEcCCCCCCccccceeccCCCC-CeEEEEEEEc--CCchHHHH
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPP---QFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGD-DYLSVHIRQL--GDWTQELK 696 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~---~~~~~pGQ~v~l~~p~~s~~e~HPFTIas~p~~-~~l~l~Ir~~--G~~T~~L~ 696 (946)
+++|++++.+++++..++|..|. .+.+.||||+.|+++..+...++||||++.|.+ +.++|+||.. |..|+.|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 36788999999999999998773 356999999999999444457899999999974 5999999998 77899886
Q ss_pred HHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCC
Q 002259 697 RVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAP 736 (946)
Q Consensus 697 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~ 736 (946)
++ ..| +.|.|.||+|.+
T Consensus 81 ~l--------~~G---------------d~v~i~gP~G~f 97 (99)
T PF00970_consen 81 QL--------KPG---------------DEVEIRGPYGNF 97 (99)
T ss_dssp TS--------CTT---------------SEEEEEEEESSE
T ss_pred hC--------CCC---------------CEEEEEEccccc
Confidence 53 234 799999999986
No 100
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.02 E-value=1e-09 Score=93.20 Aligned_cols=66 Identities=29% Similarity=0.477 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLL 334 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll 334 (946)
+++.+|+.+|+|+||+|+.+||+.++...... .. ++..++.++.+|+.+|.|+||.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~--~~--~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRD--MS--DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSH--ST--HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccc--cc--HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57899999999999999999999999754321 11 56788899999999999999999999999875
No 101
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.96 E-value=5.8e-09 Score=128.21 Aligned_cols=117 Identities=22% Similarity=0.317 Sum_probs=92.7
Q ss_pred eEEEEEEEEecCCEEEEEEECCCC-CccCCCcEEEEEcCCCC--CC-ccccceeccCC-CCCeEEEEEEEcCCchHHHHH
Q 002259 623 TVRLLKVAIYPGNVLTLQMSRPPQ-FRYKSGQYMFVQCPAVS--PF-EWHPFSITSAP-GDDYLSVHIRQLGDWTQELKR 697 (946)
Q Consensus 623 ~~~i~~v~~~~~~v~~l~l~~p~~-~~~~pGQ~v~l~~p~~s--~~-e~HPFTIas~p-~~~~l~l~Ir~~G~~T~~L~~ 697 (946)
..+|++++.+.+++..+++..|.- -.++||||+.|++++.+ .+ +..||||++.+ +.+.++|.++..|..|+.|.+
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHhc
Confidence 457888899999999999988753 35889999999986432 22 45689999876 457899999999999998876
Q ss_pred HHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHH
Q 002259 698 VFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLL 766 (946)
Q Consensus 698 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~ 766 (946)
+ .+| ..+.|.||+|.+.. ...++++|+||||+|++| +++.|.
T Consensus 872 l--------~~G---------------d~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk 913 (1028)
T PRK06567 872 L--------SEN---------------EKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLK 913 (1028)
T ss_pred C--------CCC---------------CEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHH
Confidence 5 234 67999999999864 444679999999999997 445543
No 102
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.90 E-value=1e-08 Score=112.20 Aligned_cols=130 Identities=23% Similarity=0.305 Sum_probs=94.6
Q ss_pred HHHHHHHhccc--CCCcccHHHhhhhh---CCC-CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHH
Q 002259 194 NEVQSNFNKLA--KGGFLYRADFAQCI---GMR-DSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQ 267 (946)
Q Consensus 194 ~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~-~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~ 267 (946)
.++...|+.+| +||.++..++.+.+ +.. ...+.+..+|...+ .|.| |.+||+||...+. ..+.++.
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d-~~~d--g~vDy~eF~~Y~~-----~~E~~l~ 85 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMD-ANRD--GRVDYSEFKRYLD-----NKELELY 85 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcc-cCcC--CcccHHHHHHHHH-----HhHHHHH
Confidence 45666777777 78888888887544 222 44466777777544 5555 8899999988874 3566788
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCC
Q 002259 268 IFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDT 339 (946)
Q Consensus 268 ~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~ 339 (946)
.+|+..|.|.||.|+.+|+.+.++.. +.+++ ++.++.+|+.+|+|+++.|+++||...+..+|.
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~--gi~l~------de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDL--GIQLS------DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHh--CCccC------HHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 88999999999999998888887642 23344 233456788889998999999999888888883
No 103
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.6e-08 Score=106.63 Aligned_cols=168 Identities=16% Similarity=0.194 Sum_probs=114.2
Q ss_pred HHHHHHHhhccCCCchhchhhHhhhhhccC-----CCCC------hhhHHHHHHHHhccc--CCCcccHHHhhhhhCCCC
Q 002259 156 ALRKQRAQLDRTRSGAQKALRGLRFISNSS-----KTNG------VDAWNEVQSNFNKLA--KGGFLYRADFAQCIGMRD 222 (946)
Q Consensus 156 ~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~-----~~~~------~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l~~~~ 222 (946)
+..+.+..+|++++|.++-.+.+...-..- .... .....+=+++|+..| +||.++++||...+...+
T Consensus 114 ~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe 193 (325)
T KOG4223|consen 114 EAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEE 193 (325)
T ss_pred HHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhh
Confidence 344566778888888877776655443210 0000 012234567888877 999999999999986554
Q ss_pred CHHHHH-HHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChH-----HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhc
Q 002259 223 SKEFAL-ELFDALSRRRRLKVDKISREELYEYWSQITDQSFD-----SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASA 296 (946)
Q Consensus 223 ~~~~~~-~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~-----~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~ 296 (946)
...... -+-..+.+.|.|++|+|+++||+.-|..-..+..+ .+-+.+|...|+|+||+++.+|++.-|.-
T Consensus 194 ~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P---- 269 (325)
T KOG4223|consen 194 HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILP---- 269 (325)
T ss_pred cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCC----
Confidence 321111 12344666777777999999999877644322221 24567899999999999999999977731
Q ss_pred ccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHH
Q 002259 297 NKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLE 331 (946)
Q Consensus 297 ~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~ 331 (946)
.. ...++..++.++-+.|.|+||.+|++|-.
T Consensus 270 ~~----~d~A~~EA~hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 270 SE----QDHAKAEARHLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred CC----ccHHHHHHHHHhhhhccCccccccHHHHh
Confidence 22 23567778899999999999999998643
No 104
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.84 E-value=2.3e-08 Score=109.49 Aligned_cols=168 Identities=15% Similarity=0.185 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc--CCCcccHHHhhhhhCCCCCHHHHHH
Q 002259 152 LAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA--KGGFLYRADFAQCIGMRDSKEFALE 229 (946)
Q Consensus 152 ~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l~~~~~~~~~~~ 229 (946)
....+.+..|+.||.+++|.++-.++.+-+.++... ....+.....|...| .||.++++||...+...+. .+-+
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~--~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~--~l~~ 86 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP--KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKEL--ELYR 86 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC--CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHH--HHHH
Confidence 345678899999999999999999998887777554 223355677788777 8999999999999854433 3445
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHH
Q 002259 230 LFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEY 309 (946)
Q Consensus 230 lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~ 309 (946)
+|+.++ .+.| |.|+.+|....+..++.+..+++++.+|+..|+||++.|+.+|++..+.+.. ++.++++
T Consensus 87 ~F~~iD-~~hd--G~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p--------~s~i~di 155 (463)
T KOG0036|consen 87 IFQSID-LEHD--GKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP--------ESDLEDI 155 (463)
T ss_pred HHhhhc-cccC--CccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC--------hhHHHHH
Confidence 777655 5555 9999999999999999999999999999999999999999999999986432 2233333
Q ss_pred HHHH--HHHcCCCCCCcccHHHHHHHHH
Q 002259 310 AALI--MEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 310 ~~~i--f~e~D~d~dG~Is~eEF~~ll~ 335 (946)
.+.- +.-+|...+..|. |+|.....
T Consensus 156 ~~~W~h~~~idigE~~~iP-dg~s~~e~ 182 (463)
T KOG0036|consen 156 YDFWRHVLLIDIGEDAVLP-DGDSKLEN 182 (463)
T ss_pred HHhhhhheEEEccccccCC-cchHHHHh
Confidence 2221 2236777777777 66655433
No 105
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.79 E-value=5.5e-08 Score=91.63 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=90.2
Q ss_pred cHHHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhcccC----CCcccHHHhhhhhCCCCCHH
Q 002259 150 SALAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLAK----GGFLYRADFAQCIGMRDSKE 225 (946)
Q Consensus 150 ~~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld~----dG~I~~~eF~~~l~~~~~~~ 225 (946)
++.+..+.+++|..||+.++|+|+..+...+++.+|..+++++ +.+...+... -.+|++++|.-+
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~ae---V~k~l~~~~~~~~~~~rl~FE~fLpm-------- 74 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAE---VLKVLGQPKRREMNVKRLDFEEFLPM-------- 74 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHH---HHHHHcCcccchhhhhhhhHHHHHHH--------
Confidence 4445566777777777777777777777777776666665544 4444443332 245555555332
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHH
Q 002259 226 FALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQ 305 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~ 305 (946)
++.+. ++. ...++++|++. .+.||++|+|.|...||+.++... +++++ +++
T Consensus 75 -----~q~va-knk---~q~t~edfveg----------------LrvFDkeg~G~i~~aeLRhvLttl--Gekl~--eeE 125 (152)
T KOG0030|consen 75 -----YQQVA-KNK---DQGTYEDFVEG----------------LRVFDKEGNGTIMGAELRHVLTTL--GEKLT--EEE 125 (152)
T ss_pred -----HHHHH-hcc---ccCcHHHHHHH----------------HHhhcccCCcceeHHHHHHHHHHH--Hhhcc--HHH
Confidence 22233 111 34566666654 467899999999999999999753 35666 445
Q ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 306 AEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 306 ~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
+++.+.. -.|.+|-|+|++|.+.+.
T Consensus 126 Ve~Llag-----~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 126 VEELLAG-----QEDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHcc-----ccccCCcCcHHHHHHHHh
Confidence 5554333 346789999999998764
No 106
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.79 E-value=9.8e-08 Score=97.08 Aligned_cols=128 Identities=17% Similarity=0.296 Sum_probs=102.0
Q ss_pred HHHHHHHhccc--CCCcccHHHhhhhhCCCC----CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHH
Q 002259 194 NEVQSNFNKLA--KGGFLYRADFAQCIGMRD----SKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQ 267 (946)
Q Consensus 194 ~~l~~~F~~ld--~dG~I~~~eF~~~l~~~~----~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~ 267 (946)
..+...|...| +.|+|+-+|+.+++.... +.+.++-|.. ++|.|++ |+|.|+||.++|..+. .=+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~-mfd~~~~--G~i~f~EF~~Lw~~i~------~Wr 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMIS-MFDRDNS--GTIGFKEFKALWKYIN------QWR 127 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHH-HhcCCCC--CccCHHHHHHHHHHHH------HHH
Confidence 56888888888 889999999999984221 3355666666 5557766 9999999999998763 467
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 268 IFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 268 ~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
.+|+.||+|+.|.|+..||++.+.... -.++ .+..+.+++++|..+.|.|.|++|...+..-.
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~G--y~Ls------pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLG--YRLS------PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcC--cCCC------HHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 899999999999999999999997532 2333 34566789999988899999999999887654
No 107
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.76 E-value=8.2e-08 Score=98.06 Aligned_cols=134 Identities=21% Similarity=0.180 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhhccC-CCchhchhhHhhhhhccCCCCChhhHHHHHHHHhcccCCCc-ccHHHhhhhhCC---CCCH-
Q 002259 151 ALAARALRKQRAQLDRT-RSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLAKGGF-LYRADFAQCIGM---RDSK- 224 (946)
Q Consensus 151 ~~~~r~~~~~f~~~D~d-~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld~dG~-I~~~eF~~~l~~---~~~~- 224 (946)
..+...+...|.++|++ ++|.++..|++...... .+.....+.+.|... ++|. |++++|...+.. ....
T Consensus 29 ~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~----~Np~~~rI~~~f~~~-~~~~~v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 29 ANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA----LNPLADRIIDRFDTD-GNGDPVDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred HHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh----cCcHHHHHHHHHhcc-CCCCccCHHHHHHHHhhhcCCccHH
Confidence 45567788899999999 99999999999887422 122235677777643 5555 999999998732 2222
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcC-CCh--H----HHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 225 EFALELFDALSRRRRLKVDKISREELYEYWSQITD-QSF--D----SRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 225 ~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~-~~~--~----~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
+-++-+|+ ++|.+++ |.|+.+|+..++..+.. +.. + +.++..|..+|.|+||+|+++|+..++..
T Consensus 104 ~Kl~faF~-vYD~~~~--G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 104 EKLRFAFR-VYDLDGD--GFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHH-HhcCCCC--CcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 24556788 6668887 99999999999987643 222 2 34778899999999999999999999963
No 108
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.76 E-value=8.5e-08 Score=91.80 Aligned_cols=134 Identities=16% Similarity=0.231 Sum_probs=112.8
Q ss_pred cHHHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhcccCCCcccHHHhhhhhCCC----CCHH
Q 002259 150 SALAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLAKGGFLYRADFAQCIGMR----DSKE 225 (946)
Q Consensus 150 ~~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld~dG~I~~~eF~~~l~~~----~~~~ 225 (946)
+..|..+.+++|..+|.|++|.|...++..++..+|+...++ ++...+.. ..|-|++--|..++|.+ +.++
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~---elDaM~~E--a~gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDE---ELDAMMKE--APGPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHH---HHHHHHHh--CCCCeeHHHHHHHHHHHhcCCCHHH
Confidence 466788999999999999999999999999999998775554 45555543 67899999998888643 4556
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 226 FALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
.+...|..|+ .++. |.|.-+.++++|...++...+++++.+|+.+=.|..|.|++.+|..+|+
T Consensus 102 ~I~~AF~~FD-~~~~--G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 102 VILNAFKTFD-DEGS--GKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcC-ccCC--CccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 6666777443 5555 9999999999999999999999999999999999999999999999996
No 109
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.71 E-value=1.1e-07 Score=89.68 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=63.5
Q ss_pred hHHHHHHHHhccc-CCCcccHHHhhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHH
Q 002259 192 AWNEVQSNFNKLA-KGGFLYRADFAQCIGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFF 270 (946)
Q Consensus 192 ~~~~l~~~F~~ld-~dG~I~~~eF~~~l~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F 270 (946)
.++.+--.++.++ +....+.++|.+.+ + .+|++++ |.|...|++.++..+++..++++...+.
T Consensus 67 ~FE~fLpm~q~vaknk~q~t~edfvegL-------------r-vFDkeg~--G~i~~aeLRhvLttlGekl~eeEVe~Ll 130 (152)
T KOG0030|consen 67 DFEEFLPMYQQVAKNKDQGTYEDFVEGL-------------R-VFDKEGN--GTIMGAELRHVLTTLGEKLTEEEVEELL 130 (152)
T ss_pred hHHHHHHHHHHHHhccccCcHHHHHHHH-------------H-hhcccCC--cceeHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455666676666 44456677776543 3 3447777 9999999999999999999999998887
Q ss_pred HHhcCCCCCcccHHHHHHHHH
Q 002259 271 DMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 271 ~~~D~dgdG~Is~eE~~~~l~ 291 (946)
.-. .|.+|.|.+|+|.+.+.
T Consensus 131 ag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 131 AGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred ccc-cccCCcCcHHHHHHHHh
Confidence 776 57889999999987764
No 110
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.67 E-value=2.3e-07 Score=96.42 Aligned_cols=125 Identities=16% Similarity=0.153 Sum_probs=84.3
Q ss_pred eeeEEEEEEEEecCCEEEEEEECCC----CCccCCCcEEEEEcCCCC--C--CccccceeccCCCCCeEEEEEEEc-CC-
Q 002259 621 FSTVRLLKVAIYPGNVLTLQMSRPP----QFRYKSGQYMFVQCPAVS--P--FEWHPFSITSAPGDDYLSVHIRQL-GD- 690 (946)
Q Consensus 621 ~~~~~i~~v~~~~~~v~~l~l~~p~----~~~~~pGQ~v~l~~p~~s--~--~e~HPFTIas~p~~~~l~l~Ir~~-G~- 690 (946)
+..++|......++|+..+++.+-. .....|||||.+.---++ . ..-.-+|..+....+.+.+.+|.. ||
T Consensus 149 ~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~G~ 228 (385)
T KOG3378|consen 149 EVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGGV 228 (385)
T ss_pred ccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhchh
Confidence 3456677788888999999986422 235789999988763332 1 111224444444467899999886 43
Q ss_pred chHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCC---CCCCCEEEEEEcCCCHHHHHHHHHHHHH
Q 002259 691 WTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQD---YRNYDVLLLVGLGIGATPFISILKDLLN 767 (946)
Q Consensus 691 ~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~---~~~~~~vvlIagGiGITP~lsil~~l~~ 767 (946)
.+..+++-+ .. .+.|-+.-|-|.+... ......++|+|||+||||+++|+..-+.
T Consensus 229 VS~~~H~~~-------KV---------------GD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 229 VSNFVHDNL-------KV---------------GDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL 286 (385)
T ss_pred hHHHhhccc-------cc---------------cceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh
Confidence 333333221 12 3789999999998622 2345789999999999999999987653
No 111
>PLN02964 phosphatidylserine decarboxylase
Probab=98.64 E-value=1.1e-07 Score=113.32 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=82.3
Q ss_pred hhHHHHHHHHhccc--CCCcccHHHhhhhhC-CCCCHH---HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHH
Q 002259 191 DAWNEVQSNFNKLA--KGGFLYRADFAQCIG-MRDSKE---FALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDS 264 (946)
Q Consensus 191 ~~~~~l~~~F~~ld--~dG~I~~~eF~~~l~-~~~~~~---~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~ 264 (946)
.+.+++++.|+.+| +||.+ +..+...+| ....++ +++++|+. .|.|++ |.|+++||..++..++....++
T Consensus 140 kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~-~D~Dgd--G~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAI-VDYDED--GQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHH-hCCCCC--CeEcHHHHHHHHHHhccCCCHH
Confidence 45688999999999 88987 666666667 354444 47889995 457777 9999999999999988778899
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
+++.+|+.||+|+||+|+.+||+++|..
T Consensus 216 EL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 216 KKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999999999999999975
No 112
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.6e-07 Score=100.75 Aligned_cols=173 Identities=18% Similarity=0.160 Sum_probs=122.8
Q ss_pred HHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc--CCCcccHHHhhhhhC-CC-------C-
Q 002259 154 ARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA--KGGFLYRADFAQCIG-MR-------D- 222 (946)
Q Consensus 154 ~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l~-~~-------~- 222 (946)
..++..++.++|.+++|.++..++...+.... ..-...+..++|...+ .||.|+++|....+. +. +
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~---k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQ---KKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHH---HHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 45677899999999999999999999887431 1223367788888888 899999999977763 21 1
Q ss_pred --CHH------HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-CCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 002259 223 --SKE------FALELFDALSRRRRLKVDKISREELYEYWSQIT-DQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLS 293 (946)
Q Consensus 223 --~~~------~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~-~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~ 293 (946)
.+. .-++-|+ .+|.|+| |.+|.+||-.++..-- +...+=-|+.-..-.|+||||+|+.+||..=|-..
T Consensus 153 e~~~~~~km~~rDe~rFk-~AD~d~d--g~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFK-AADQDGD--GSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred hhcHHHHHHHHHHHHHHh-hcccCCC--CcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 111 1234577 5667777 9999999999885321 12223347777888999999999999987666432
Q ss_pred hhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 294 ASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 294 ~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
-. +.-. .+++...-++.++..|.|+||+++-+|....+.
T Consensus 230 ~~-~~~e--peWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~ 268 (325)
T KOG4223|consen 230 EG-NEEE--PEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL 268 (325)
T ss_pred cC-CCCC--cccccccHHHHHHHhhcCCCCccCHHHHhcccC
Confidence 22 2111 233444445778899999999999999987664
No 113
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.59 E-value=1.2e-07 Score=85.39 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcC-CCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 002259 264 SRLQIFFDMVDK-NEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQK 337 (946)
Q Consensus 264 ~~l~~~F~~~D~-dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~ 337 (946)
..+..+|+.||+ |++|+|+.+||+.+|+..+. +.++ + . +.++.||+.+|.|+||.|+|+||..+|..-
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls--~-~--~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLK--D-V--EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhcc--C-H--HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 358899999999 99999999999999975332 2233 1 0 457788999999999999999999988653
No 114
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.51 E-value=2.5e-07 Score=84.31 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=53.2
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 264 SRLQIFFDMVD-KNEDG-RIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 264 ~~l~~~F~~~D-~dgdG-~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
..+..+|+.|| +|||| +|+.+||+++|...... .+.. ...+..++.||+++|.|+||.|+|+||..+|..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~-~~~~--~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTD-FLSS--QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHH-hccc--ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 35788899999 79998 59999999999653221 1110 012345677899999999999999999998864
No 115
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.49 E-value=9.2e-07 Score=105.16 Aligned_cols=128 Identities=15% Similarity=0.229 Sum_probs=78.1
Q ss_pred CCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccceEEEEEEeC
Q 002259 741 RNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTNAYFYWVTR 820 (946)
Q Consensus 741 ~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~Wv~R 820 (946)
+...+++|||-|+||+||.+++++........ ...... +.||+++|
T Consensus 489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~---------------------------------~~~~~~-~~Lf~GcR 534 (645)
T KOG1158|consen 489 DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQG---------------------------------PKFGGG-MWLFFGCR 534 (645)
T ss_pred CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcC---------------------------------ccCCcc-eEEEEeCC
Confidence 45568999999999999999999988765421 112234 89999999
Q ss_pred CCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCCCHHHHHHH
Q 002259 821 EQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVLSK 900 (946)
Q Consensus 821 ~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRPd~~~v~~~ 900 (946)
+++....+++++++..+.. ...++..-+++.-. ..+ .. .|. + -|-.-++|.+-
T Consensus 535 ~~~~d~LY~eE~~~~~~~~--~l~~l~~A~SReq~--~~k-~Y---VQd--------------~-----l~e~~d~v~~~ 587 (645)
T KOG1158|consen 535 NSDEDYLYREEWEEYKKAG--ILTRLDVAFSREQT--PKK-IY---VQD--------------R-----LREYADEVWEL 587 (645)
T ss_pred CchHHHHHHHHHHHHHhcC--cchhheeeeeccCC--CCc-ee---hhh--------------H-----HHHHHHHHHHH
Confidence 9999778888777763322 22233333333210 000 00 000 0 00011223332
Q ss_pred HHhhcCCCcEEEEEeCChh-HHHHHHHHHHhhhc
Q 002259 901 LSSKHCNARIGVFYCGAPV-LAKELSKLCYEFNQ 933 (946)
Q Consensus 901 ~~~~~~~~~v~V~~CGP~~-l~~~vr~~~~~~~~ 933 (946)
+.+ ....+|+||+.. |+++|.++..+...
T Consensus 588 L~~----~~g~iYvCGd~~~Ma~dV~~~L~~i~~ 617 (645)
T KOG1158|consen 588 LKK----EGGHIYVCGDAKGMAKDVQDALVRILA 617 (645)
T ss_pred Hhc----CCcEEEEecCCccchHHHHHHHHHHHH
Confidence 222 235799999998 99999999988644
No 116
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.47 E-value=5.2e-07 Score=81.19 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=52.9
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHHhhh---cccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 264 SRLQIFFDMVD-KNEDG-RIAEEEVKEIIMLSAS---ANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 264 ~~l~~~F~~~D-~dgdG-~Is~eE~~~~l~~~~~---~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
..++.+|+.|| +|||| .|+.+||+.+|+..+. +...+ ++.++.+|+++|.|+||.|+|+||..++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~------~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKE------QEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCC------HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35889999998 89999 6999999999985221 11112 234667888999999999999999998764
No 117
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.46 E-value=2.7e-07 Score=78.23 Aligned_cols=61 Identities=25% Similarity=0.311 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCC----hHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 002259 227 ALELFDALSRRRRLKVDKISREELYEYWSQITDQS----FDSRLQIFFDMVDKNEDGRIAEEEVKEII 290 (946)
Q Consensus 227 ~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~----~~~~l~~~F~~~D~dgdG~Is~eE~~~~l 290 (946)
++++|+. .|.|++ |+|+.+||..++..+.... .++.++.+|+.+|.|+||.|+++||.++|
T Consensus 2 l~~~F~~-~D~d~~--G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKK-FDKDGD--GYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHH-HSTTSS--SEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHH-HcCCcc--CCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4678994 557777 9999999999999887443 34567777999999999999999999875
No 118
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.41 E-value=4.7e-06 Score=91.72 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 264 SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 264 ~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
..|+.+|+..|.|+.|.|+.+||+.+.++..+-.+....++++.+ +-+.+|.|+||.|++.||...++-.+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~----la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILE----LARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHH----HHHhhccCCCCcccHHHHHHHHhhhc
Confidence 458999999999999999999999999865544333333444444 44558999999999999999876544
No 119
>PLN02964 phosphatidylserine decarboxylase
Probab=98.38 E-value=1.9e-06 Score=102.94 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=83.2
Q ss_pred CCcccHHHhhhhhCC-----C-CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-CCChHHH---HHHHHHHhcC
Q 002259 206 GGFLYRADFAQCIGM-----R-DSKEFALELFDALSRRRRLKVDKISREELYEYWSQIT-DQSFDSR---LQIFFDMVDK 275 (946)
Q Consensus 206 dG~I~~~eF~~~l~~-----~-~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~-~~~~~~~---l~~~F~~~D~ 275 (946)
...++.++....-.. . ...+...+.|+ ++|.|++ |.| +..++..++ ...++++ ++.+|+.+|.
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~-lfD~dgd--G~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~ 190 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFD-LLDPSSS--NKV----VGSIFVSCSIEDPVETERSFARRILAIVDY 190 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHH-HHCCCCC--CcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 345666666543322 1 11134566777 4446666 887 666677776 3455554 8999999999
Q ss_pred CCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 276 NEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 276 dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
|+||.|+++||..+|.... .... ++.+..+|+.+|.|++|+|+++||+.+|...+
T Consensus 191 DgdG~IdfdEFl~lL~~lg--~~~s------eEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 191 DEDGQLSFSEFSDLIKAFG--NLVA------ANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred CCCCeEcHHHHHHHHHHhc--cCCC------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 9999999999999997422 1111 33466789999999999999999999998865
No 120
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.37 E-value=2.1e-06 Score=87.87 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcC-CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccc
Q 002259 223 SKEFALELFDALSRRRRLKVDKISREELYEYWSQITD-QSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSR 301 (946)
Q Consensus 223 ~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~-~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~ 301 (946)
++..+.++++.+-..... |.++.++|+.++..+.. +....-.+.+|+.||.|+||.|+++||...+.....
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~--G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r------ 95 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPS--GRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR------ 95 (193)
T ss_pred CHHHHHHHHHHhcccCCC--CccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC------
Confidence 445667778766544444 99999999999998764 666677999999999999999999997766643322
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 302 LKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 302 ~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
..+++.++-.|+-+|.|+||+|+++|+..++..
T Consensus 96 --Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 96 --GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred --CcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 234555667799999999999999999998765
No 121
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1e-05 Score=96.55 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=106.2
Q ss_pred ccccceeccCCC--CCeEEEEEEEc----------CCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCcc
Q 002259 666 EWHPFSITSAPG--DDYLSVHIRQL----------GDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPY 733 (946)
Q Consensus 666 e~HPFTIas~p~--~~~l~l~Ir~~----------G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPy 733 (946)
..+-|||+|.|. .+.+.+.|... |..|..|.++.. .| ..+.|-..-
T Consensus 372 kPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~-------~g---------------~~i~v~v~~ 429 (587)
T COG0369 372 KPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLE-------EG---------------DTIPVFVQP 429 (587)
T ss_pred CCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhc-------CC---------------CeEEEEecc
Confidence 448899999986 35566666543 455666666532 12 355665555
Q ss_pred C-CCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHHhHhhhhhhcccccccccCCCCCCCCCCCCCCccCccccccCccce
Q 002259 734 G-APAQDYRNYDVLLLVGLGIGATPFISILKDLLNNIVKQEEQADSVSDFSRRSDNSVGSNDSNTNRVSPKRKKALKTTN 812 (946)
Q Consensus 734 G-~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (946)
+ .+..+-....++||||.|+||+||.++++.-..+.. ..+
T Consensus 430 n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~---------------------------------------~gk 470 (587)
T COG0369 430 NKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGA---------------------------------------EGK 470 (587)
T ss_pred CCccccCCCCCCceEEEcCCCCchhHHHHHHHHHhccc---------------------------------------cCc
Confidence 5 333333334789999999999999999998765421 127
Q ss_pred EEEEEEeCCCCchhhHHHHHHHHHhHcCCCeEEEEEEEecccCCCchhHHHHHHHHhhhcccCCCccccCCccccccCCC
Q 002259 813 AYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARP 892 (946)
Q Consensus 813 v~l~Wv~R~~~~~~wf~~~L~el~e~~~~~~i~i~~yvT~~~~~~d~~~~~~~~~~~l~~~~~~~d~~sg~~~~~~~gRP 892 (946)
+.|++++|+..+=..+++++++..+.. ....+....++..++ +.- .|. ++ |-
T Consensus 471 ~wLfFG~R~~~~DfLY~~Ewe~~~~~G--~~~~l~~AfSRdq~~---KiY----VQd--------------~l-----re 522 (587)
T COG0369 471 NWLFFGCRHFTEDFLYQEEWEEYLKDG--VLTRLDLAFSRDQEE---KIY----VQD--------------RL-----RE 522 (587)
T ss_pred eEEEecCCCCccchhhHHHHHHHHhcC--CceeEEEEEeecCCC---Ccc----HHH--------------HH-----HH
Confidence 899999999665336777776643321 245555555543211 000 010 00 11
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEeC-ChhHHHHHHHHHHhhhc
Q 002259 893 NWKKVLSKLSSKHCNARIGVFYCG-APVLAKELSKLCYEFNQ 933 (946)
Q Consensus 893 d~~~v~~~~~~~~~~~~v~V~~CG-P~~l~~~vr~~~~~~~~ 933 (946)
+- +.+.+..++ + ..+|+|| +..|.++|.+++.+.-.
T Consensus 523 ~~-del~~~l~~---g-a~~YVCGd~~~Ma~dV~~AL~~il~ 559 (587)
T COG0369 523 QA-DELWEWLEE---G-AHIYVCGDAKGMAKDVEEALLDILA 559 (587)
T ss_pred hH-HHHHHHHHC---C-CEEEEeCCCccchHHHHHHHHHHHH
Confidence 11 223333322 2 5799999 99999999999988644
No 122
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.36 E-value=1.9e-06 Score=96.20 Aligned_cols=178 Identities=16% Similarity=0.235 Sum_probs=128.9
Q ss_pred HHHHHHHHHhhccCCCchhchhhHhhh--hhccCCCCC------------hhhHHHHHHHHhccc--CCCcccHHHhhhh
Q 002259 154 ARALRKQRAQLDRTRSGAQKALRGLRF--ISNSSKTNG------------VDAWNEVQSNFNKLA--KGGFLYRADFAQC 217 (946)
Q Consensus 154 ~r~~~~~f~~~D~d~sG~~~a~e~l~~--i~~~~~~~~------------~~~~~~l~~~F~~ld--~dG~I~~~eF~~~ 217 (946)
.-...+.|-..|+.++|.++-.++++- +..+....+ -+....+.-.|-.+| .||.|+.+++...
T Consensus 224 ~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 224 ETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 345567888999999998888777653 111111111 122234555688888 8999999999887
Q ss_pred hCCCCCHHHHHHHHHHHHhh---CCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-
Q 002259 218 IGMRDSKEFALELFDALSRR---RRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLS- 293 (946)
Q Consensus 218 l~~~~~~~~~~~lF~~l~d~---d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~- 293 (946)
-....+.-+++++|+.+-+. ..+ |+++|++|+.++-.+.+..+.+-++-.|+..|.||||.|+.+|++-+....
T Consensus 304 ~d~tlt~~ivdRIFs~v~r~~~~~~e--GrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~ 381 (493)
T KOG2562|consen 304 GDHTLTERIVDRIFSQVPRGFTVKVE--GRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQL 381 (493)
T ss_pred hccchhhHHHHHHHhhccccceeeec--CcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHH
Confidence 65555667899999944322 234 999999999999888777778889999999999999999999998877521
Q ss_pred -----hhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCC
Q 002259 294 -----ASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDT 339 (946)
Q Consensus 294 -----~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~ 339 (946)
.....+. .++...+|+..+-+.+.+.||++||+. .+....
T Consensus 382 ~rm~~~~~e~l~-----fed~l~qi~DMvkP~~~~kItLqDlk~-skl~~~ 426 (493)
T KOG2562|consen 382 QRMECMGQEALP-----FEDALCQIRDMVKPEDENKITLQDLKG-SKLAGT 426 (493)
T ss_pred HHHHhcCCCccc-----HHHHHHHHHHHhCccCCCceeHHHHhh-ccccch
Confidence 1111222 466677788888888899999999998 555444
No 123
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.36 E-value=1.3e-06 Score=79.85 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcC-CC-CCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 264 SRLQIFFDMVDK-NE-DGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 264 ~~l~~~F~~~D~-dg-dG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
..++.+|+.||. || ||+|+.+||+.+|+..... .+. ....++.++.+|+++|.|++|.|+|+||..++....
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~-~lg--~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSE-FLK--NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHH-Hhh--ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 568999999997 97 6999999999999742211 010 001234567789999999999999999999987544
No 124
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.33 E-value=1.6e-06 Score=78.80 Aligned_cols=70 Identities=23% Similarity=0.371 Sum_probs=53.3
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 264 SRLQIFFDMVD-KNEDG-RIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 264 ~~l~~~F~~~D-~dgdG-~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
+.++.+|++|| +|++| .|+.+||+.+|+..+.. .+.. ...++.++.+|+++|.|++|.|+|+||..++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~-~~~~--~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSD-FLDA--QKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHH-HccC--CCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 56999999997 99999 59999999999642221 1110 011334667899999999999999999998865
No 125
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.32 E-value=1.5e-06 Score=82.08 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 262 FDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 262 ~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
...++..+|..+|.|+||.|+.+|+..++ . . ..+..+..+|+.+|.|+||+||++||...+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l--~---------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR-L--D---------PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH-c--c---------chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45679999999999999999999999876 1 1 1244556789999999999999999999983
No 126
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.28 E-value=1.2e-06 Score=93.06 Aligned_cols=124 Identities=14% Similarity=0.085 Sum_probs=102.2
Q ss_pred CCCcccHHHhhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcC-CChHHHHHHHHHHhcCCCCCcccH
Q 002259 205 KGGFLYRADFAQCIGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITD-QSFDSRLQIFFDMVDKNEDGRIAE 283 (946)
Q Consensus 205 ~dG~I~~~eF~~~l~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~-~~~~~~l~~~F~~~D~dgdG~Is~ 283 (946)
+.+.|-..||...+....+ +....+|. ++|+.++ |.+||.|....++-++. ..+.+-+|.+|++||.+.||.++.
T Consensus 240 kg~~igi~efa~~l~vpvs-d~l~~~f~-LFde~~t--g~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge 315 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLRVPVS-DKLAPTFM-LFDEGTT--GNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGE 315 (412)
T ss_pred cCCCcceeEeeeeeecchh-hhhhhhhh-eecCCCC--CcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccch
Confidence 6778888888888766656 55667898 7767777 99999999998887654 456778999999999999999999
Q ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCCcc
Q 002259 284 EEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDTYL 341 (946)
Q Consensus 284 eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~~~ 341 (946)
++|.-+++.......+. +..+|.+.|...||+|++++|..++..+|.+.
T Consensus 316 ~~ls~ilq~~lgv~~l~---------v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 316 HILSLILQVVLGVEVLR---------VPVLFPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred HHHHHHHHHhcCcceee---------ccccchhhhcccCcceeHHHHHHHHHhCchhh
Confidence 99999998766555444 23478899999999999999999999999743
No 127
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.24 E-value=2.3e-06 Score=77.05 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcC--CCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 264 SRLQIFFDMVDK--NEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 264 ~~l~~~F~~~D~--dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
++++.+|..||+ |++|.|+.+||..+++..... ..+ ....++.++.||..+|.|++|.|+|+||..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~-~~~--~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN-FLK--NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh-hcc--CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 468889999999 899999999999999742221 111 0012344677899999999999999999998864
No 128
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.24 E-value=3.2e-06 Score=76.10 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhh-CCCCCCcccHHHHHHHHHH-hcCCChH-HHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 226 FALELFDALSRR-RRLKVDKISREELYEYWSQ-ITDQSFD-SRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 226 ~~~~lF~~l~d~-d~d~~G~Is~~Ef~~~l~~-l~~~~~~-~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
.+.++|+.++ . +++ |+|+.+||+.++.. +++..++ ++++.+|+.+|.|+||.|+++||..+|..
T Consensus 9 ~l~~~F~~fd-~~~~~--g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 9 TLVSNFHKAS-VKGGK--ESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHh-CCCCC--CeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4667899554 5 555 99999999999998 8776666 88999999999999999999999999963
No 129
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.24 E-value=3.3e-06 Score=77.40 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 002259 264 SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQK 337 (946)
Q Consensus 264 ~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~ 337 (946)
++++.+|+.||.|++|.|+.+|+++++... +++ + +.++.||..+|.+++|.|+|+||..++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~--~----~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLP--Q----TLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCC--H----HHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 568999999999999999999999999751 232 2 235678889999999999999999988643
No 130
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.21 E-value=2.7e-06 Score=71.98 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=50.3
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 002259 267 QIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQK 337 (946)
Q Consensus 267 ~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~ 337 (946)
+.+|+.+|.|+||.|+.+|++.++... +.+ ++.++.+|+.+|.|++|.|+++||..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~------~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GLP------RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CCC------HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 568999999999999999999999642 122 2335678899999999999999999988653
No 131
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.20 E-value=5.3e-06 Score=84.90 Aligned_cols=178 Identities=14% Similarity=0.184 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc--CCCcccHHHhhhhh-CCCC--CH-
Q 002259 151 ALAARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA--KGGFLYRADFAQCI-GMRD--SK- 224 (946)
Q Consensus 151 ~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l-~~~~--~~- 224 (946)
....+++..+|.+-|.+.+|.++|.+..+.|.+.....-....++-+..|+..| +||.|+.+||.--+ .+++ .+
T Consensus 97 rrsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 97 RRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred hHHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHH
Confidence 344678899999999999999999999999875421111112234445677667 99999999995543 2211 00
Q ss_pred --------------HHHHHHHHHHHhhCCCCCCcccH---------HHHHHHHHH-hcCCChHHHHHHHHHHhcCCCCCc
Q 002259 225 --------------EFALELFDALSRRRRLKVDKISR---------EELYEYWSQ-ITDQSFDSRLQIFFDMVDKNEDGR 280 (946)
Q Consensus 225 --------------~~~~~lF~~l~d~d~d~~G~Is~---------~Ef~~~l~~-l~~~~~~~~l~~~F~~~D~dgdG~ 280 (946)
+..+++.+.+ +|.+ +..+- +||..++.. -+.+.....++.+.+.+|+|||..
T Consensus 177 vadairlneelkVDeEtqevlenl--kdRw--yqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkq 252 (362)
T KOG4251|consen 177 VADAIRLNEELKVDEETQEVLENL--KDRW--YQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQ 252 (362)
T ss_pred HHHHhhccCcccccHHHHHHHHhh--hhhh--ccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCee
Confidence 1222222322 2222 44444 888887753 344455566888899999999999
Q ss_pred ccHHHHHHHHHHhhhc---ccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 002259 281 IAEEEVKEIIMLSASA---NKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLL 334 (946)
Q Consensus 281 Is~eE~~~~l~~~~~~---~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll 334 (946)
++..||....--.... ..++ +-+.++-....=+.+|.|.||.+|++|++..+
T Consensus 253 lSvpeFislpvGTVenqqgqdid--dnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 253 LSVPEFISLPVGTVENQQGQDID--DNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred ecchhhhcCCCcchhhhhccchH--HHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 9999987765321111 1111 22344444554566899999999999999985
No 132
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.20 E-value=5.5e-06 Score=74.72 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=52.2
Q ss_pred HHHHHHHHH-hcCCCCC-cccHHHHHHHHHHhhh---cccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 264 SRLQIFFDM-VDKNEDG-RIAEEEVKEIIMLSAS---ANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 264 ~~l~~~F~~-~D~dgdG-~Is~eE~~~~l~~~~~---~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
..+..+|+. +|+|||| .|+.+||+.++..... .+..+ +..++.+|+++|.|+||.|+|+||..+|..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~------~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKD------PGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCC------HHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 357889999 7888987 9999999999975422 11111 344667899999999999999999998864
No 133
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.20 E-value=3.2e-06 Score=68.61 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHHhcCC-ChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 242 VDKISREELYEYWSQITDQ-SFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 242 ~G~Is~~Ef~~~l~~l~~~-~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
+|.|+.+||+.++..++.. .++++++.+|..+|.|+||+|+++||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 4999999999999888877 8889999999999999999999999999885
No 134
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.19 E-value=5.7e-06 Score=74.47 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhCCCCCC-cccHHHHHHHHHH-----hcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 226 FALELFDALSRRRRLKVD-KISREELYEYWSQ-----ITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G-~Is~~Ef~~~l~~-----l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
.+.++|+.++++|++ | .|+.+||+.+|.. ++...++++++.+++.+|.|+||.|+++||..++..
T Consensus 9 ~l~~aF~~fD~~dgd--G~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 9 ALIDVFHQYSGREGD--KHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHhcccCCC--cCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 467789966556777 9 6999999999998 777778889999999999999999999999988853
No 135
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.18 E-value=6.6e-06 Score=74.95 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhCCCCCC-cccHHHHHHHHHH-h----cCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 226 FALELFDALSRRRRLKVD-KISREELYEYWSQ-I----TDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G-~Is~~Ef~~~l~~-l----~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
.+.++|+.++|.|++ | +|+.+||..++.. + .....+++++.+++.+|.|+||.|+++||..+|..
T Consensus 11 ~~~~~F~~~dd~dgd--g~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 11 TLIRIFHNYSGKEGD--RYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHccCCC--CCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 456789977777887 8 5999999999975 2 33446678999999999999999999999999964
No 136
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.18 E-value=6e-06 Score=74.36 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=51.3
Q ss_pred HHHHHHHHhcC-CC-CCcccHHHHHHHHHHhh-hcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 265 RLQIFFDMVDK-NE-DGRIAEEEVKEIIMLSA-SANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 265 ~l~~~F~~~D~-dg-dG~Is~eE~~~~l~~~~-~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
.+-.+|..||. || +|+|+.+||+++|+... -+.+++ + +.++.+|+.+|.|++|.|+|+||..+|..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t--~----~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQ--D----AEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCC--H----HHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 36678999998 78 89999999999996311 123333 2 34566788999999999999999988753
No 137
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.06 E-value=4.6e-05 Score=79.55 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=82.3
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHhhhhhCCCCCchhhhcccchhhHHHHHHHHHHH
Q 002259 457 VPFDDNINFHKTIAAAIVVGVILHVGNHLACDFPRLISSSESDYHRYLSSSFGKHKPTYWDLVKGAEGITGILMVIFMAI 536 (946)
Q Consensus 457 ip~d~~~~fHk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i 536 (946)
.+.|+.+.+||++|..+++++++|.++++..+. . .++.....+.. .+| .-+.|.+++++++.
T Consensus 68 ~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~-----~--~~~~~~~~~i~--~~~---------~i~~G~ia~~lLl~ 129 (205)
T PRK05419 68 TGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDL-----G--LDWSLLGKEIV--KRP---------YITVGMAAFLILLP 129 (205)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c--ccHHHHHHHHH--hch---------HHHHHHHHHHHHHH
Confidence 345678999999999999999999998764221 0 01101011111 122 23568888888888
Q ss_pred HHHHhhHHHHhhccCCCCCccccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcccccceeeehhhhhhhhhhhcceeee
Q 002259 537 AFILATRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIVYILLIVHGILLFLVHKWYLKTTWMYLAVPVLAYAGERTLRF 616 (946)
Q Consensus 537 ~~~~s~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~~ill~~H~~~~~~~~~w~~~~~w~~~~~~~~l~~~dr~~R~ 616 (946)
+.++|..+.||+. +| .|...|.+.++++++.++|..+.. .... ....+|.++ ++++..-|+.+.
T Consensus 130 LaiTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~~--~~~~~y~~~-~~~ll~~R~~~~ 193 (205)
T PRK05419 130 LALTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSDS--PEPLIYAAI-VAVLLALRLKKL 193 (205)
T ss_pred HHHHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-cccc--ccHHHHHHH-HHHHHHHHHHHH
Confidence 8899999998874 68 799999999999888899955321 1111 233456544 344444566554
Q ss_pred e
Q 002259 617 F 617 (946)
Q Consensus 617 ~ 617 (946)
.
T Consensus 194 ~ 194 (205)
T PRK05419 194 R 194 (205)
T ss_pred H
Confidence 3
No 138
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.05 E-value=1.8e-05 Score=71.95 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhCCCCCC-cccHHHHHHHHHH-hcC----CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 225 EFALELFDALSRRRRLKVD-KISREELYEYWSQ-ITD----QSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 225 ~~~~~lF~~l~d~d~d~~G-~Is~~Ef~~~l~~-l~~----~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
+.+.++|+.++|.|++ | .|+.+|+..++.. ++. ..+++.++.+|+.+|.|++|.|+++||..++..
T Consensus 9 ~~l~~~F~~fDd~dg~--G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGD--KYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCC--CCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4577899966558877 9 5999999999975 433 346788999999999999999999999998864
No 139
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.02 E-value=6.1e-06 Score=57.90 Aligned_cols=28 Identities=39% Similarity=0.529 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
+++.+|+.||+|+||+|+++||..+|+.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4789999999999999999999999863
No 140
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.00 E-value=2.2e-05 Score=71.74 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-----hcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 226 FALELFDALSRRRR-LKVDKISREELYEYWSQ-----ITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 226 ~~~~lF~~l~d~d~-d~~G~Is~~Ef~~~l~~-----l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
.+.++|+.+++.|+ + |.|+.+|+..++.. ++...++++++.+|+.+|.|+||.|+++||..++.
T Consensus 9 ~l~~~F~~~D~~dg~d--G~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 9 SLILTFHRYAGKDGDK--NTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHhccCCCC--CeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45668886664465 5 99999999999875 34456778999999999999999999999999885
No 141
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.99 E-value=3e-05 Score=86.12 Aligned_cols=154 Identities=14% Similarity=0.237 Sum_probs=105.8
Q ss_pred HhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc-CC-CcccHHHhhhhh-CCC--CCH---HHHHHHHHH
Q 002259 162 AQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA-KG-GFLYRADFAQCI-GMR--DSK---EFALELFDA 233 (946)
Q Consensus 162 ~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld-~d-G~I~~~eF~~~l-~~~--~~~---~~~~~lF~~ 233 (946)
.-|-.++++.++..++++|+.++ +.+-++-.|..++ ++ |.|+..+|++++ ... ..+ ...+++-+.
T Consensus 293 yFFG~rg~~kLs~deF~~F~e~L-------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~k 365 (489)
T KOG2643|consen 293 YFFGKRGNGKLSIDEFLKFQENL-------QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEK 365 (489)
T ss_pred HhhccCCCccccHHHHHHHHHHH-------HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHh
Confidence 46778999999999999998865 2345666888888 54 899999999986 222 111 133444432
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHH
Q 002259 234 LSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALI 313 (946)
Q Consensus 234 l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~i 313 (946)
+. . .+-.||++||..+..-+..-. +.+.+...| ....+-|+..||+++.... .+-+|+ +.+++.+
T Consensus 366 f~---~-~~~gISl~Ef~~Ff~Fl~~l~---dfd~Al~fy-~~Ag~~i~~~~f~raa~~v-tGveLS------dhVvdvv 430 (489)
T KOG2643|consen 366 FK---D-DGKGISLQEFKAFFRFLNNLN---DFDIALRFY-HMAGASIDEKTFQRAAKVV-TGVELS------DHVVDVV 430 (489)
T ss_pred cc---C-CCCCcCHHHHHHHHHHHhhhh---HHHHHHHHH-HHcCCCCCHHHHHHHHHHh-cCcccc------cceeeeE
Confidence 22 2 126799999998876553322 233444444 2345679999999988643 223343 2356678
Q ss_pred HHHcCCCCCCcccHHHHHHHHHhC
Q 002259 314 MEELDPEGLGYIELWQLETLLLQK 337 (946)
Q Consensus 314 f~e~D~d~dG~Is~eEF~~ll~~~ 337 (946)
|.-+|.|+||.++.+||..+|.+.
T Consensus 431 F~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 431 FTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred EEEEccCCCCcccHHHHHHHHHHH
Confidence 999999999999999999999764
No 142
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.99 E-value=6.9e-05 Score=83.29 Aligned_cols=156 Identities=18% Similarity=0.263 Sum_probs=104.1
Q ss_pred hhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc--CCCcccHHHhhhhh---------CC--------CCC
Q 002259 163 QLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA--KGGFLYRADFAQCI---------GM--------RDS 223 (946)
Q Consensus 163 ~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l---------~~--------~~~ 223 (946)
-+|-+.+|-|+..|-.=++.-++. +. ..+.=.|..+| +||.|+.+||.... ++ ..+
T Consensus 207 F~~lg~~GLIsfSdYiFLlTlLS~--p~---~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s 281 (489)
T KOG2643|consen 207 FYKLGESGLISFSDYIFLLTLLSI--PE---RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNS 281 (489)
T ss_pred EEEcCCCCeeeHHHHHHHHHHHcc--Cc---ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccce
Confidence 345667788888776655443321 11 23555677777 99999999996654 11 000
Q ss_pred H--HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccc
Q 002259 224 K--EFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSR 301 (946)
Q Consensus 224 ~--~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~ 301 (946)
. +.-..+-.-|+-.|++ ++++++||++++..| .+|-++.=|..+|+...|.|++++|.++|-.....+.
T Consensus 282 ~~~~~nsaL~~yFFG~rg~--~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~--- 352 (489)
T KOG2643|consen 282 FKVEVNSALLTYFFGKRGN--GKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNS--- 352 (489)
T ss_pred ehhhhhhhHHHHhhccCCC--ccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccch---
Confidence 0 1111222225557777 999999999999876 4555677799999999999999999999964332222
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 302 LKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 302 ~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
+..+.+....-++++-+ +-.|+++||+....
T Consensus 353 --~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 353 --KKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred --HhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 12344566667778766 66699999998653
No 143
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.98 E-value=1.2e-05 Score=65.77 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=49.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 002259 266 LQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLL 334 (946)
Q Consensus 266 l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll 334 (946)
++.+|+.+|.|++|.|+.+|+..++..... .. .++.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~------~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE--GL------SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CC------CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 678899999999999999999999975321 11 23455668999999999999999998865
No 144
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.90 E-value=2.8e-05 Score=63.03 Aligned_cols=53 Identities=26% Similarity=0.495 Sum_probs=41.0
Q ss_pred CCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 277 EDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 277 gdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
.+|.|+.+||+.+|.. ...+.++ + +.++.+|..+|.|++|+|+|+||..+|..
T Consensus 1 ~~G~i~~~~~~~~l~~-~g~~~~s--~----~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSK-LGIKDLS--E----EEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHH-TTSSSSC--H----HHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH-hCCCCCC--H----HHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999943 2211144 2 23677899999999999999999999864
No 145
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.87 E-value=6.3e-05 Score=67.74 Aligned_cols=65 Identities=20% Similarity=0.328 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH---hcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 227 ALELFDALSRRRRLKVDKISREELYEYWSQ---ITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 227 ~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~---l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
+-++|+.++..++ ++|.|+.+||..++.. ++...++++++.+|+.+|.|+||.|+++||..+|..
T Consensus 12 ~i~~F~~y~~~~~-~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 12 LVAIFHKYSGREG-DKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHccCC-CCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4567886664455 2499999999999973 577788899999999999999999999999988863
No 146
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.85 E-value=6.9e-05 Score=67.63 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-----cCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 226 FALELFDALSRRRRLKVDKISREELYEYWSQI-----TDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l-----~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
.+..+|+..++.|++ ++.|+.+||..++..- .....++.++.+++.+|.|+||.|+++||.++|..
T Consensus 10 ~l~~~F~~y~~~dg~-~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 10 SLIAVFQKYAGKDGD-SYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHhccCCC-cCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 355678865666665 2499999999998864 33455678999999999999999999999998864
No 147
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.84 E-value=6.1e-05 Score=61.49 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 002259 227 ALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEII 290 (946)
Q Consensus 227 ~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l 290 (946)
+..+|+ ..|.+++ |.|+++||..++..++....++.++.+|+.+|.|++|.|+.+||..++
T Consensus 2 ~~~~f~-~~d~~~~--g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFR-LFDKDGD--GTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHH-HhCCCCC--CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 345777 4446666 999999999999999888889999999999999999999999998765
No 148
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.80 E-value=6.7e-05 Score=63.33 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=50.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 228 LELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 228 ~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
+++|+.+ |.+++ |.|+.+|+..++..++ ..++.++.+|+.+|.|++|.|+++||..++..
T Consensus 2 ~~~F~~~-D~~~~--G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSL-DPDGD--GLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHh-CCCCC--CcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 3578854 46766 9999999999998874 36778999999999999999999999988864
No 149
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.76 E-value=9.6e-05 Score=66.60 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCC--CCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 265 RLQIFFDMVDKN--EDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 265 ~l~~~F~~~D~d--gdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
.+-.+|..|+.+ .+|.|+.+||+.+|...+.. .++ ....++.++.+|+++|.|++|.|+|+||..++..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-~~t--~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-FLK--KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-hhc--cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 467789999866 47999999999999642221 111 0112456778899999999999999999998864
No 150
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.69 E-value=0.00014 Score=66.65 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 226 FALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
...++|+. .|.+++ |.|+++|+..++... +..+++++.+|..+|.|++|.|+++||..++..
T Consensus 11 ~l~~~F~~-~D~d~~--G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 11 KYEQIFRS-LDKNQD--GTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHH-hCCCCC--CeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 45667884 446666 999999999999875 356788999999999999999999999998863
No 151
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.61 E-value=0.00022 Score=64.16 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhh-CCCCCCcccHHHHHHHHHH-hcCC----ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 226 FALELFDALSRR-RRLKVDKISREELYEYWSQ-ITDQ----SFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 226 ~~~~lF~~l~d~-d~d~~G~Is~~Ef~~~l~~-l~~~----~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
.+.++|..++.. +++ |.|+.+||..++.. ++.. ..+++++.+|..+|.|++|.|+++||..++..
T Consensus 9 ~l~~~F~~~D~~~~~~--G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 9 TIIDVFHKYSGKEGDK--DTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHhhccCCC--CcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 456789965532 566 99999999999875 4332 34788999999999999999999999998864
No 152
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.58 E-value=0.00024 Score=64.02 Aligned_cols=66 Identities=18% Similarity=0.363 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH-HhcCCCh----HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 002259 227 ALELFDALSRRRRLKVDKISREELYEYWS-QITDQSF----DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLS 293 (946)
Q Consensus 227 ~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~-~l~~~~~----~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~ 293 (946)
+.++|...+..++ .+|.|+.+||..++. .+++..+ +++++.+|+.+|.|+||.|+++||..+|...
T Consensus 10 ~~~~f~~y~~~~~-~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 10 IINVFHQYSVRKG-HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHhccCC-CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4456775554433 359999999999996 4544444 7899999999999999999999999988643
No 153
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.56 E-value=0.00038 Score=79.54 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 260 QSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 260 ~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
....+.++.+|++||.||||.|+.+||.. ++.+|+.+|.|+||.|+++||...+..
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34567899999999999999999999831 235899999999999999999998754
No 154
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.51 E-value=0.00021 Score=68.09 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=70.7
Q ss_pred HHHHHHHhcccCCCcccHHHhhhhhC----CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCC-ChHHH---
Q 002259 194 NEVQSNFNKLAKGGFLYRADFAQCIG----MRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQ-SFDSR--- 265 (946)
Q Consensus 194 ~~l~~~F~~ld~dG~I~~~eF~~~l~----~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~-~~~~~--- 265 (946)
+++-+.|.. ||+|.+++++|..++. +.+-+.-+.-.|+ +.|.|+| +.|--+++...+..+..+ .++++
T Consensus 74 ~ri~e~FSe-DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFk-IYDfd~D--~~i~~~DL~~~l~~lTr~eLs~eEv~~ 149 (189)
T KOG0038|consen 74 RRICEVFSE-DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFK-IYDFDGD--EFIGHDDLEKTLTSLTRDELSDEEVEL 149 (189)
T ss_pred HHHHHHhcc-CCCCcccHHHHHHHHHHHHhhChHHhhhhheeE-EeecCCC--CcccHHHHHHHHHHHhhccCCHHHHHH
Confidence 566677763 4999999999988872 3333233444566 5667887 999999999988877543 33333
Q ss_pred -HHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 266 -LQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 266 -l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
++.+.+..|.||||+|++.||..|+.
T Consensus 150 i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 150 ICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 67788899999999999999999985
No 155
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.51 E-value=0.00031 Score=66.47 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 002259 225 EFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEII 290 (946)
Q Consensus 225 ~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l 290 (946)
..+.-+|..+ |.|+| |.|+.+|+..+. + ...+..+..+|+.+|.|+||.||.+||..++
T Consensus 48 ~~l~w~F~~l-D~d~D--G~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQL-DGNYD--GKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHH-CCCCC--CcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4566778854 46766 999999999765 2 3446678899999999999999999999988
No 156
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.49 E-value=0.00065 Score=76.34 Aligned_cols=128 Identities=17% Similarity=0.290 Sum_probs=77.4
Q ss_pred CCcccHHHhhhhh----CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcc
Q 002259 206 GGFLYRADFAQCI----GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRI 281 (946)
Q Consensus 206 dG~I~~~eF~~~l----~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~I 281 (946)
....+.++|..-. +....++...++...++|.-.| |.|||+||+.+=..++ ..|..-+.+|+.||+.++|.+
T Consensus 50 e~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKD--glisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~v 125 (694)
T KOG0751|consen 50 ESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKD--GLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEV 125 (694)
T ss_pred ccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhccc--ccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCce
Confidence 3456677775532 2222333444555556665555 7777777776544443 235566777777777777777
Q ss_pred cHHHHHHHHHHhhhccccc---------------------------chHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Q 002259 282 AEEEVKEIIMLSASANKLS---------------------------RLKEQAEEYAALIMEELDPEGLGYIELWQLETLL 334 (946)
Q Consensus 282 s~eE~~~~l~~~~~~~~l~---------------------------~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll 334 (946)
|.+++.+++....-.+... ...+-.+|...+.|++-|..++|.|+--+|+..|
T Consensus 126 s~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~im 205 (694)
T KOG0751|consen 126 SFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIM 205 (694)
T ss_pred ehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhh
Confidence 7777777774211000000 0012233445677888999999999999999887
Q ss_pred HhC
Q 002259 335 LQK 337 (946)
Q Consensus 335 ~~~ 337 (946)
...
T Consensus 206 vt~ 208 (694)
T KOG0751|consen 206 VTI 208 (694)
T ss_pred hhh
Confidence 654
No 157
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.46 E-value=0.001 Score=68.62 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=84.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHhhhhhCCCCCchhhhcccchhhHHHHHHHHHHHHHHHh
Q 002259 462 NINFHKTIAAAIVVGVILHVGNHLACDFPRLISSSESDYHRYLSSSFGKHKPTYWDLVKGAEGITGILMVIFMAIAFILA 541 (946)
Q Consensus 462 ~~~fHk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s 541 (946)
.+.+-|.+|.++++.+++|...|+..+. ++ + +...+. +.........|++++++|..+.++|
T Consensus 73 l~~~Rr~LGl~af~~~~lH~~~Y~~~~l---------~~-~-~~~~~~-------d~~~rpyitiG~iaflll~pLalTS 134 (209)
T COG2717 73 LIRIRRALGLWAFFYALLHFTAYLVLDL---------GL-D-LALLGL-------DLLKRPYITIGMIAFLLLIPLALTS 134 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hc-c-HHHhhH-------HHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999975321 11 0 111111 1222334578999999999999999
Q ss_pred hHHHHhhccCCCCCccccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcccccceeeehhhhhhhhhhhcceeeee
Q 002259 542 TRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIVYILLIVHGILLFLVHKWYLKTTWMYLAVPVLAYAGERTLRFF 617 (946)
Q Consensus 542 ~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~~ill~~H~~~~~~~~~w~~~~~w~~~~~~~~l~~~dr~~R~~ 617 (946)
..++||+. + ..|...|.+.++++++..+|-.+.. ... ....++|.++ .+.+.+.|+.+..
T Consensus 135 ~k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~--K~~-~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 135 FKWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSV--KID-MPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred hHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhc--Ccc-chHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999985 5 7788999999999999999976421 111 1233456554 4566667766553
No 158
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.45 E-value=0.00013 Score=49.28 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q 002259 266 LQIFFDMVDKNEDGRIAEEEVKEII 290 (946)
Q Consensus 266 l~~~F~~~D~dgdG~Is~eE~~~~l 290 (946)
|+.+|+.+|.|+||.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999999864
No 159
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.44 E-value=0.00013 Score=51.23 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=24.1
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 310 AALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 310 ~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
++.+|+.+|.|+||+|+++||..+|..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 356899999999999999999999864
No 160
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.42 E-value=0.00027 Score=70.96 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 264 SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 264 ~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
+....+|+.||.|.||+|+..|++.||...... |-.--+..||++.|-|.||.|+|-||.-+....-
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap--------QTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP--------QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCc--------hhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 347789999999999999999999999642211 2223345689999999999999999998887654
No 161
>PF14658 EF-hand_9: EF-hand domain
Probab=97.40 E-value=0.00027 Score=59.21 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=50.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCC-CcccHHHHHHHHHh
Q 002259 268 IFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGL-GYIELWQLETLLLQ 336 (946)
Q Consensus 268 ~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~d-G~Is~eEF~~ll~~ 336 (946)
.+|++||.++.|.|...++..+|+.+...+ .. + +-++.+..++|+++. |.|++++|..+|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~-p~--e----~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRS-PE--E----SELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCC-Cc--H----HHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 379999999999999999999998765421 11 2 234556778999998 99999999999975
No 162
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.38 E-value=0.00019 Score=51.24 Aligned_cols=27 Identities=44% Similarity=0.631 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
+++.+|+.||.|+||+|+.+||+.+|+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999997
No 163
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=97.28 E-value=0.0024 Score=72.48 Aligned_cols=88 Identities=23% Similarity=0.354 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCCccccceeccCCCCCeEEEEEEE-----------cCCchHHHHHHHhhcCCCCCCCCCCcccccccccC
Q 002259 654 YMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQ-----------LGDWTQELKRVFSEACEPPVAGKSGLLRADETTKK 722 (946)
Q Consensus 654 ~v~l~~p~~s~~e~HPFTIas~p~~~~l~l~Ir~-----------~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~ 722 (946)
|++=.+|.+ ..+.|||+|.|....+++.|-. +|=.+..|..+- +|.
T Consensus 358 yl~d~~P~I---rPR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~--------~g~------------ 414 (574)
T KOG1159|consen 358 YLLDLLPVI---RPRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASLK--------PGD------------ 414 (574)
T ss_pred HHHHhcccc---ccceeeeccCCCCCceeEEEEEEEEeeeccccccchhHHHHhhcC--------CCC------------
Confidence 333344555 4599999999988777766543 255666666651 231
Q ss_pred CCCEEEEeCccCCCCCCCCCCCEEEEEEcCCCHHHHHHHHHHHHH
Q 002259 723 SLPKLLIDGPYGAPAQDYRNYDVLLLVGLGIGATPFISILKDLLN 767 (946)
Q Consensus 723 ~~~~v~idGPyG~~~~~~~~~~~vvlIagGiGITP~lsil~~l~~ 767 (946)
..++.|. -|....+.....+++|||-|+||||+.+++++-+.
T Consensus 415 -~i~~~v~--~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~ 456 (574)
T KOG1159|consen 415 -EIPIKVR--PGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIY 456 (574)
T ss_pred -eEEEEEe--cCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHh
Confidence 1333333 24433333445689999999999999999987765
No 164
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.21 E-value=0.0009 Score=60.08 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 266 LQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 266 l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
+-..|..|--| +|.+++.||+++|...+.. -+.. ..-.+.++.+|+.+|.|+||.|+|+||..++..
T Consensus 10 lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~-~l~~--~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 10 MMLTFHKFAGE-KNYLNRDDLQKLMEKEFSE-FLKN--QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHcCC-CCcCCHHHHHHHHHHHhHH-HHcC--CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 55678888633 4689999999999754431 1111 112456788999999999999999999998764
No 165
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.03 E-value=0.00092 Score=68.88 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=88.7
Q ss_pred HHHHHHHhccc--CCCcccHHHhhhhhCCC------CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCC----
Q 002259 194 NEVQSNFNKLA--KGGFLYRADFAQCIGMR------DSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQS---- 261 (946)
Q Consensus 194 ~~l~~~F~~ld--~dG~I~~~eF~~~l~~~------~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~---- 261 (946)
..+...|.+.| .||+|+-.|+++.+-.+ .+.+.-+--|++++ .|+| |.|+.+||.--+......+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVD-pdgD--GhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVD-PDGD--GHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeC-CCCC--CceehhhhhhHHHhhcCcchHHH
Confidence 67888999988 89999999998876222 12223344566443 6776 9999999966443322111
Q ss_pred ----------hHHHHHHHHHHhcCCCCCcccH---------HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCC
Q 002259 262 ----------FDSRLQIFFDMVDKNEDGRIAE---------EEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGL 322 (946)
Q Consensus 262 ----------~~~~l~~~F~~~D~dgdG~Is~---------eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~d 322 (946)
.-++-..+|..-|+|.+|..+. +||..++.-..+ ...+..++..|+..+|.|+|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhS-------rgmLrfmVkeivrdlDqdgD 250 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHS-------RGMLRFMVKEIVRDLDQDGD 250 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhh-------hhhHHHHHHHHHHHhccCCC
Confidence 1112233455556777776655 888888743222 33466778888999999999
Q ss_pred CcccHHHHHHHHH
Q 002259 323 GYIELWQLETLLL 335 (946)
Q Consensus 323 G~Is~eEF~~ll~ 335 (946)
..++..||..+.-
T Consensus 251 kqlSvpeFislpv 263 (362)
T KOG4251|consen 251 KQLSVPEFISLPV 263 (362)
T ss_pred eeecchhhhcCCC
Confidence 9999999988643
No 166
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.96 E-value=0.0039 Score=62.85 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHH
Q 002259 226 FALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQ 305 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~ 305 (946)
.+..+|. ..|.|.| |+|++.|+..+|..++...+.=-++.|+..+|.|.||+||+.||.-+...... ..|.. ++.
T Consensus 100 ~~~~~Fk-~yDe~rD--gfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa-gEL~~-ds~ 174 (244)
T KOG0041|consen 100 DAESMFK-QYDEDRD--GFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA-GELQE-DSG 174 (244)
T ss_pred HHHHHHH-Hhccccc--ccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc-ccccc-chH
Confidence 3556888 4557777 99999999999999988777778999999999999999999999988865443 23332 222
Q ss_pred HHHHHHHHHHHcCCCCCCcccHHHHH
Q 002259 306 AEEYAALIMEELDPEGLGYIELWQLE 331 (946)
Q Consensus 306 ~~~~~~~if~e~D~d~dG~Is~eEF~ 331 (946)
...++ =..+.|....|.-.-..|-
T Consensus 175 ~~~LA--r~~eVDVskeGV~GAknFF 198 (244)
T KOG0041|consen 175 LLRLA--RLSEVDVSKEGVSGAKNFF 198 (244)
T ss_pred HHHHH--HhcccchhhhhhhhHHHHH
Confidence 22222 1467898888876665544
No 167
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.86 E-value=0.0032 Score=49.88 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 244 KISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 244 ~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
+++|+|.+.++..+.-...++-+..+|+.+|++++|++..+||.++.+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4789999999999988888899999999999999999999999998863
No 168
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.85 E-value=0.0026 Score=72.82 Aligned_cols=58 Identities=31% Similarity=0.348 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 219 GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 219 ~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
|....+..+..+|+ +.|.++| |.|+.+||.. ++.+|+.+|.|+||.|+++||.+.+..
T Consensus 328 ~~~~~~~~l~~aF~-~~D~dgd--G~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFR-LYDLDGD--GFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHH-HhCCCCC--CcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 44455567888999 5668887 9999999942 578999999999999999999999864
No 169
>PF14658 EF-hand_9: EF-hand domain
Probab=96.83 E-value=0.0032 Score=52.83 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=52.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhcC-CChHHHHHHHHHHhcCCCC-CcccHHHHHHHHH
Q 002259 230 LFDALSRRRRLKVDKISREELYEYWSQITD-QSFDSRLQIFFDMVDKNED-GRIAEEEVKEIIM 291 (946)
Q Consensus 230 lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~-~~~~~~l~~~F~~~D~dgd-G~Is~eE~~~~l~ 291 (946)
+|+ ++|.++. |.|.-.++..+|+.++. ...+++|+.+.+.+|.+|. |.|++++|..+|+
T Consensus 3 ~F~-~fD~~~t--G~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFD-AFDTQKT--GRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chh-hcCCcCC--ceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 577 4556666 99999999999999988 7888999999999999988 9999999999996
No 170
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.71 E-value=0.013 Score=73.57 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=94.1
Q ss_pred CChhhHHHHHHHHhccc--CCCcccHHHhhhhh---CCC-------CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002259 188 NGVDAWNEVQSNFNKLA--KGGFLYRADFAQCI---GMR-------DSKEFALELFDALSRRRRLKVDKISREELYEYWS 255 (946)
Q Consensus 188 ~~~~~~~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~-------~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~ 255 (946)
.+...+.++.-+|+.|| .+|.++.++|..|+ |.. ..++..+++.+.++ ...+ |+|+..||..+|.
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vD-P~r~--G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVD-PNRD--GYVSLQDYMAFMI 2323 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcC-CCCc--CcccHHHHHHHHH
Confidence 34467788888999999 89999999999997 211 22346677777433 5555 9999999999886
Q ss_pred Hh-cCC-ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCC---C-CCcccHHH
Q 002259 256 QI-TDQ-SFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPE---G-LGYIELWQ 329 (946)
Q Consensus 256 ~l-~~~-~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d---~-dG~Is~eE 329 (946)
.- ..+ ..+++++.+|+.+|. |.-+|+.+|+..-|. .++++=.+..|-..+|+. . -+.++|.+
T Consensus 2324 ~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt-----------reqaefc~s~m~~~~e~~~~~s~q~~l~y~d 2391 (2399)
T KOG0040|consen 2324 SKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLT-----------REQAEFCMSKMKPYAETSSGRSDQVALDYKD 2391 (2399)
T ss_pred hcccccccchHHHHHHHHHhhc-CCccccHHHHHhcCC-----------HHHHHHHHHHhhhhcccccCCCccccccHHH
Confidence 42 122 334589999999998 788999998765542 455666666766667774 2 26788888
Q ss_pred HHHHH
Q 002259 330 LETLL 334 (946)
Q Consensus 330 F~~ll 334 (946)
|.+-+
T Consensus 2392 fv~sl 2396 (2399)
T KOG0040|consen 2392 FVNSL 2396 (2399)
T ss_pred HHHHH
Confidence 88754
No 171
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.26 Score=53.14 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=85.3
Q ss_pred eeeEEEEEEEEecCCEEEEEEECCCCCc----cCCCcEEEEEcCCCCC--------------------CccccceeccC-
Q 002259 621 FSTVRLLKVAIYPGNVLTLQMSRPPQFR----YKSGQYMFVQCPAVSP--------------------FEWHPFSITSA- 675 (946)
Q Consensus 621 ~~~~~i~~v~~~~~~v~~l~l~~p~~~~----~~pGQ~v~l~~p~~s~--------------------~e~HPFTIas~- 675 (946)
.+.++++.++.+++++++++|..+.... ...+||+.|.+|.... .-.++|||.+.
T Consensus 17 ~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d 96 (265)
T COG2375 17 LHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVD 96 (265)
T ss_pred ceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeec
Confidence 3567889999999999999999886433 3344599999986431 12688999755
Q ss_pred CCCCe--EEEEEE-EcCCchHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCCCCCCCCCCEEEEEEcC
Q 002259 676 PGDDY--LSVHIR-QLGDWTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRNYDVLLLVGLG 752 (946)
Q Consensus 676 p~~~~--l~l~Ir-~~G~~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~~~~~~~~~~vvlIagG 752 (946)
++.+. +.|++- ..|.-+..-.+. ++| +.+.|-||-|... +...++..+|||==
T Consensus 97 ~~~~e~~vDfVlH~~~gpas~WA~~a--------~~G---------------D~l~i~GP~g~~~-p~~~~~~~lLigDe 152 (265)
T COG2375 97 AAAGELDVDFVLHGEGGPASRWARTA--------QPG---------------DTLTIMGPRGSLV-PPEAADWYLLIGDE 152 (265)
T ss_pred ccccEEEEEEEEcCCCCcchhhHhhC--------CCC---------------CEEEEeCCCCCCC-CCCCcceEEEeccc
Confidence 33333 344444 334333332221 234 7999999999954 45678999999999
Q ss_pred CCHHHHHHHHHHHH
Q 002259 753 IGATPFISILKDLL 766 (946)
Q Consensus 753 iGITP~lsil~~l~ 766 (946)
+++..+..||.++-
T Consensus 153 tAlPAIa~iLE~lp 166 (265)
T COG2375 153 TALPAIARILETLP 166 (265)
T ss_pred cchHHHHHHHHhCC
Confidence 99999999888763
No 172
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.58 E-value=0.0023 Score=43.24 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.4
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHH
Q 002259 311 ALIMEELDPEGLGYIELWQLETLL 334 (946)
Q Consensus 311 ~~if~e~D~d~dG~Is~eEF~~ll 334 (946)
+.+|+.+|.|+||.|+++||..++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 357999999999999999999865
No 173
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0055 Score=56.25 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=55.4
Q ss_pred ChHHHHHH-HHHHhcCCCCCcccHHHHHHHHHHhhh----cc---cccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q 002259 261 SFDSRLQI-FFDMVDKNEDGRIAEEEVKEIIMLSAS----AN---KLSRLKEQAEEYAALIMEELDPEGLGYIELWQLET 332 (946)
Q Consensus 261 ~~~~~l~~-~F~~~D~dgdG~Is~eE~~~~l~~~~~----~~---~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ 332 (946)
.+.+++++ .|+|.|.|+||.|+--|+...+.-.-. +. .+. ++.+++.+++.+++.-|.|+||+|+|-||.+
T Consensus 63 mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~-sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 63 MTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLS-SEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred CCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCC-CHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 34455554 699999999999999999888863221 11 121 3667889999999999999999999999976
Q ss_pred H
Q 002259 333 L 333 (946)
Q Consensus 333 l 333 (946)
-
T Consensus 142 ~ 142 (144)
T KOG4065|consen 142 R 142 (144)
T ss_pred h
Confidence 3
No 174
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.26 E-value=0.013 Score=52.66 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHHH-----hcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 243 DKISREELYEYWSQ-----ITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 243 G~Is~~Ef~~~l~~-----l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
+.++..||...+.. +......+.++.+|+..|.|+||.|+++||..++..
T Consensus 22 ~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 22 NYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred CcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 67777777777652 344455667888888889999999999888888853
No 175
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.24 E-value=0.04 Score=62.47 Aligned_cols=134 Identities=15% Similarity=0.128 Sum_probs=80.5
Q ss_pred HHHHHHH---hhccCCCchhchhhHhhhhhcc-CCCCChhhHHHHHHHHhcccCCCcccHHHhhhhhCCCCC-HHHHHHH
Q 002259 156 ALRKQRA---QLDRTRSGAQKALRGLRFISNS-SKTNGVDAWNEVQSNFNKLAKGGFLYRADFAQCIGMRDS-KEFALEL 230 (946)
Q Consensus 156 ~~~~~f~---~~D~d~sG~~~a~e~l~~i~~~-~~~~~~~~~~~l~~~F~~ld~dG~I~~~eF~~~l~~~~~-~~~~~~l 230 (946)
++|..|- ..+.++..-.++.++.+..-.+ +.........++..-.....+||.|+++||+..=..... +..-..+
T Consensus 34 eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~~a 113 (694)
T KOG0751|consen 34 ELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFEVA 113 (694)
T ss_pred HHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHHHH
Confidence 4455554 3345555566777766653322 111112222333333332228888888888765433322 2234457
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhcC-----------------------------------CChHHHHHHHHHHhcC
Q 002259 231 FDALSRRRRLKVDKISREELYEYWSQITD-----------------------------------QSFDSRLQIFFDMVDK 275 (946)
Q Consensus 231 F~~l~d~d~d~~G~Is~~Ef~~~l~~l~~-----------------------------------~~~~~~l~~~F~~~D~ 275 (946)
|+ ++|+.++ |.+|++++.++..+... .-.+|..+++|+..|+
T Consensus 114 Fq-lFDr~~~--~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~ 190 (694)
T KOG0751|consen 114 FQ-LFDRLGN--GEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDK 190 (694)
T ss_pred HH-HhcccCC--CceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77 5556666 88888888887764310 0113457789999999
Q ss_pred CCCCcccHHHHHHHHHH
Q 002259 276 NEDGRIAEEEVKEIIML 292 (946)
Q Consensus 276 dgdG~Is~eE~~~~l~~ 292 (946)
.++|.||.=+|+.+|..
T Consensus 191 ~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 191 AKNGFISVLDFQDIMVT 207 (694)
T ss_pred cCCCeeeeechHhhhhh
Confidence 99999999999999853
No 176
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.98 E-value=0.02 Score=53.25 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=38.0
Q ss_pred CCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 002259 242 VDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLS 293 (946)
Q Consensus 242 ~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~ 293 (946)
+|.|+-++-..++..- +...+.|..++++.|.|+||+++++||.-+|.+.
T Consensus 23 ~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 23 DGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp TTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3888888888776643 5667788888888888888888888888877643
No 177
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.98 E-value=0.079 Score=65.11 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=55.6
Q ss_pred CCCcccHHHhhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh---c-----CCChHHHHHHHHHHhcCC
Q 002259 205 KGGFLYRADFAQCIGMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQI---T-----DQSFDSRLQIFFDMVDKN 276 (946)
Q Consensus 205 ~dG~I~~~eF~~~l~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l---~-----~~~~~~~l~~~F~~~D~d 276 (946)
++| |+.+||. +.....++-.+-+|++.+ . .+ |.++-+|+.+++... . ....++....+++..|.+
T Consensus 1 ~~~-~~~~~~~--~~~~~~d~~l~~~f~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 1 GEG-ISFQELK--ITDCSYDDKLQTFFDMYD-K-GD--GKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CCC-cchhhhc--ccCCChhHHHHHHHHHHh-h-hc--CCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 367 8999998 333334445666777544 3 44 999999998876532 1 223345567789999999
Q ss_pred CCCcccHHHHHHHHH
Q 002259 277 EDGRIAEEEVKEIIM 291 (946)
Q Consensus 277 gdG~Is~eE~~~~l~ 291 (946)
..|++..+++.-++.
T Consensus 74 ~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 74 HKGYITNEDLEILLL 88 (646)
T ss_pred ccceeeecchhHHHH
Confidence 999999999888775
No 178
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.90 E-value=0.0043 Score=58.59 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q 002259 260 QSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLET 332 (946)
Q Consensus 260 ~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ 332 (946)
......+...|..+|.|+||.|+..|++.+.... .. .+..+...++.-|.|+||.|++.|+..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~-------~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MP-------PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---ST-------TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hh-------hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4455679999999999999999999998776422 11 122345678999999999999999864
No 179
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.80 E-value=0.031 Score=51.95 Aligned_cols=63 Identities=19% Similarity=0.364 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 263 DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 263 ~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
.++-+.+|+..| +++|+|+-++.+.++.. .++. . +.+..|..-.|.|+||+++++||...|.-
T Consensus 9 ~~~y~~~F~~l~-~~~g~isg~~a~~~f~~----S~L~--~----~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 9 KQKYDQIFQSLD-PQDGKISGDQAREFFMK----SGLP--R----DVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHCTS-SSTTEEEHHHHHHHHHH----TTSS--H----HHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCCeEeHHHHHHHHHH----cCCC--H----HHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 456778899988 46899999999998853 2444 2 34556677799999999999999987753
No 180
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=95.73 E-value=0.023 Score=63.46 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=96.6
Q ss_pred HHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhcccCCCcccHHHhhhhhCCCC-------------
Q 002259 156 ALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLAKGGFLYRADFAQCIGMRD------------- 222 (946)
Q Consensus 156 ~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld~dG~I~~~eF~~~l~~~~------------- 222 (946)
++.+.|+++|.+++|.++..+...++.+... -..-|..+.......+.||.+...+-.+.+....
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~--L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITG--LNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhc--CCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 4577899999999999999999888876521 1234666666665545788887766544442110
Q ss_pred --CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcC----CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 223 --SKEFALELFDALSRRRRLKVDKISREELYEYWSQITD----QSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 223 --~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~----~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
.+..++-+|+.++ .|+. |.|+.+||..++..++. ...++.+-++=++.|.|+||.|+..||.+...+
T Consensus 543 Yr~ks~LetiF~~iD-~D~S--G~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 543 YRNKSSLETIFNIID-ADNS--GEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HhchhhHHHHHHHhc-cCCC--CceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 1124567888443 6655 99999999999987653 456778888889999999999999999988864
No 181
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.64 E-value=0.034 Score=63.09 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=88.4
Q ss_pred HHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhc----cc--CCCcccHHHhhhhh---CCCCCHHHHHHH
Q 002259 160 QRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNK----LA--KGGFLYRADFAQCI---GMRDSKEFALEL 230 (946)
Q Consensus 160 ~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~----ld--~dG~I~~~eF~~~l---~~~~~~~~~~~l 230 (946)
.|..+|.|.+|.++..++.++-.. +.. ..-+.+.|.+ .. .+|++++++|.-.+ ..+.+.+-++-.
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~---tlt---~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDH---TLT---ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred HHhhhccccccccCHHHHHHHhcc---chh---hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 377999999999999999887542 222 2446677772 22 89999999998764 333344567778
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHH----hc-----CCChHHHHHHHHHHhcCCCCCcccHHHHHH
Q 002259 231 FDALSRRRRLKVDKISREELYEYWSQ----IT-----DQSFDSRLQIFFDMVDKNEDGRIAEEEVKE 288 (946)
Q Consensus 231 F~~l~d~d~d~~G~Is~~Ef~~~l~~----l~-----~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~ 288 (946)
|+.+| .|++ |.|+.+|+.-+... +. ....++-+-++++|+-....|+||.+||+.
T Consensus 357 FrclD-ld~~--G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 357 FRCLD-LDGD--GILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeee-ccCC--CcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 99544 8888 99999998766542 21 235577888999999877789999999886
No 182
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.58 E-value=0.013 Score=41.67 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 311 ALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 311 ~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
..+|+.+|.|+||+|+.+||..+|.+
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45899999999999999999999874
No 183
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.24 E-value=0.05 Score=43.26 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 280 RIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 280 ~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
++++.|++.+++..- + +.-++|+..+|++.|.+++|.++-+||+.+..
T Consensus 1 kmsf~Evk~lLk~~N----I----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN----I----EMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----c----CcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 478999999997421 1 23467899999999999999999999998764
No 184
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.94 E-value=0.026 Score=37.89 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 266 LQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 266 l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
++.+|+.+|.|++|.|+.+||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 67899999999999999999998885
No 185
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.74 E-value=0.092 Score=60.30 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
.++..|...| |++|+|+..|+..++....... .-..++.++.++.+.+.|.+|.|+||||..++..
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-----g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-----GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-----cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 3677888999 9999999999998886322111 1234566777888899999999999999986654
No 186
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.96 E-value=0.086 Score=56.51 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=63.7
Q ss_pred ccHHHHHHHHHHhcCCChH-HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhc-----ccccc---hHHHHHHHHHHHHH
Q 002259 245 ISREELYEYWSQITDQSFD-SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASA-----NKLSR---LKEQAEEYAALIME 315 (946)
Q Consensus 245 Is~~Ef~~~l~~l~~~~~~-~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~-----~~l~~---~~e~~~~~~~~if~ 315 (946)
=|.+.+.++|.....-... -.-+.+|.+.|.|+||+++..|+..+....+.. |.-+. .++..-.+-+.+|+
T Consensus 224 GSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk 303 (442)
T KOG3866|consen 224 GSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMK 303 (442)
T ss_pred CcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3678888888754321111 124678999999999999999999988643321 11111 12222334477899
Q ss_pred HcCCCCCCcccHHHHHHHHHhC
Q 002259 316 ELDPEGLGYIELWQLETLLLQK 337 (946)
Q Consensus 316 e~D~d~dG~Is~eEF~~ll~~~ 337 (946)
+.|.|.|..||++||.+--.+.
T Consensus 304 ~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 304 QVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hcccchhhhhhHHHHHhhhhhc
Confidence 9999999999999999865543
No 187
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.58 E-value=0.25 Score=62.71 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=68.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhcCC-------ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccch
Q 002259 230 LFDALSRRRRLKVDKISREELYEYWSQITDQ-------SFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRL 302 (946)
Q Consensus 230 lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~-------~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~ 302 (946)
+|+ -+|++.+ |.+++++|...++.++.. .++.+++.+.+.+|.+.||+|+..|...+|-..-+.|-++
T Consensus 2258 ~fk-hFDkek~--G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s-- 2332 (2399)
T KOG0040|consen 2258 MFK-HFDKEKN--GRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS-- 2332 (2399)
T ss_pred HHH-Hhchhhc--cCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc--
Confidence 555 3445555 999999999999887654 3445899999999999999999999998886544444333
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q 002259 303 KEQAEEYAALIMEELDPEGLGYIELWQLET 332 (946)
Q Consensus 303 ~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ 332 (946)
.+.++..|+.+|. +.-||+-++...
T Consensus 2333 ----~~eIE~AfraL~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2333 ----SEEIEDAFRALDA-GKPYVTKEELYQ 2357 (2399)
T ss_pred ----hHHHHHHHHHhhc-CCccccHHHHHh
Confidence 2245566888998 677888777643
No 188
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.06 E-value=0.12 Score=34.42 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.0
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 311 ALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 311 ~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
..+|+.+|.|++|.|+++||..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45799999999999999999998864
No 189
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=92.81 E-value=0.053 Score=51.27 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHH
Q 002259 226 FALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKE 288 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~ 288 (946)
.+.=.|..|| .++| |.++..|+..+...+ ...+.-++.+|+.+|.|+||.||..|+..
T Consensus 55 ~~~W~F~~LD-~n~d--~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 55 VVHWKFCQLD-RNKD--GVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHH---T-S--SEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhHhhhc-CCCC--CccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3444555444 4444 777777776654433 22233467778888888888888887653
No 190
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=91.59 E-value=0.38 Score=57.06 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHH
Q 002259 223 SKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEV 286 (946)
Q Consensus 223 ~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~ 286 (946)
+..++.++|+ +.|..++ |.|+|.+++..+..+..+..-+++..+|+++|.++| ..+.||+
T Consensus 553 s~~~~~rlF~-l~D~s~~--g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFR-LLDDSMT--GLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHH-hcccCCc--ceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 3457888999 5546666 999999999999999888888999999999999999 9999997
No 191
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=91.30 E-value=1.1 Score=42.68 Aligned_cols=89 Identities=13% Similarity=0.226 Sum_probs=50.7
Q ss_pred EEEEEEEecCCEEEEEEECCC--CCc-cCCCcEEEEEcCCCCCC---------------------ccccceeccC-CCCC
Q 002259 625 RLLKVAIYPGNVLTLQMSRPP--QFR-YKSGQYMFVQCPAVSPF---------------------EWHPFSITSA-PGDD 679 (946)
Q Consensus 625 ~i~~v~~~~~~v~~l~l~~p~--~~~-~~pGQ~v~l~~p~~s~~---------------------e~HPFTIas~-p~~~ 679 (946)
+|+.++.+++++++|++..+. .+. ..||||+.|.+|....- ..+.|||-+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 467889999999999999875 233 57999999999875321 3577999776 4556
Q ss_pred eEEEEEEEcCC---chHHHHHHHhhcCCCCCCCCCCcccccccccCCCCEEEEeCccCCC
Q 002259 680 YLSVHIRQLGD---WTQELKRVFSEACEPPVAGKSGLLRADETTKKSLPKLLIDGPYGAP 736 (946)
Q Consensus 680 ~l~l~Ir~~G~---~T~~L~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~idGPyG~~ 736 (946)
.+.|-+-..|+ -+...... ++| +.+.|-||-|.+
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~A--------~pG---------------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARSA--------RPG---------------DRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH----------TT----------------EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhhC--------CCC---------------CEEEEeCCCCCC
Confidence 77765555553 44444332 234 789999998763
No 192
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=91.24 E-value=1.9 Score=52.44 Aligned_cols=130 Identities=15% Similarity=0.267 Sum_probs=91.3
Q ss_pred HHHHHHHhccc--CCCcccHHHhhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHH
Q 002259 194 NEVQSNFNKLA--KGGFLYRADFAQCI---GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQI 268 (946)
Q Consensus 194 ~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~ 268 (946)
.++...|+..| ++|.+++++-..++ ........+..+|+.. +...+ +++..+++..+...+.... ++..
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~-~~~~~--~k~~~~~~~~~~~~~~~rp---ev~~ 209 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKES-DNSQT--GKLEEEEFVKFRKELTKRP---EVYF 209 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHH-Hhhcc--ceehHHHHHHHHHhhccCc---hHHH
Confidence 57888888888 89999999887775 3334445677788755 34444 9999999999877665443 6888
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCC----CCCcccHHHHHHHHHh
Q 002259 269 FFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPE----GLGYIELWQLETLLLQ 336 (946)
Q Consensus 269 ~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d----~dG~Is~eEF~~ll~~ 336 (946)
+|..+- ++.++++.+++.+++...-.+.... . +.++.|++++... ..+.++++.|...|..
T Consensus 210 ~f~~~s-~~~~~ls~~~L~~Fl~~~q~e~~~~--~----~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 210 LFVQYS-HGKEYLSTDDLLRFLEEEQGEDGAT--L----DEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHh-CCCCccCHHHHHHHHHHhccccccc--H----HHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 888884 4488999999999998653333333 2 3344445444332 3466999999998864
No 193
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.21 E-value=2.2 Score=51.45 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
+-+.+|+..|+...|++|-..-+.+|.. .+|. +.+ +..|.--.|.|+||.++-|||.-.|.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~q----S~Lp--q~~----LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQ----SGLP--QNQ----LAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHh----cCCc--hhh----HhhheeeeccCCCCcccHHHHHHHHH
Confidence 5688999999999999999888887753 2333 222 33455568999999999999986554
No 194
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.74 E-value=2.4 Score=50.21 Aligned_cols=174 Identities=14% Similarity=0.111 Sum_probs=94.0
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCCchhchhhHhhhhhcc-CCCCChhhHHHHHHHHhcccC----CCcccHHHhhhhh
Q 002259 144 NGNGFDSALAARALRKQRAQLDRTRSGAQKALRGLRFISNS-SKTNGVDAWNEVQSNFNKLAK----GGFLYRADFAQCI 218 (946)
Q Consensus 144 ~~~~~~~~~~~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~-~~~~~~~~~~~l~~~F~~ld~----dG~I~~~eF~~~l 218 (946)
+......+...+.+.++|..-|.|.+|+++-.|+..+-.+- +........+.+....++... +..++..-|.-+.
T Consensus 184 a~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~ 263 (625)
T KOG1707|consen 184 AEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLN 263 (625)
T ss_pred cccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHH
Confidence 33445556667888999999999999999999998875543 333444444555555554333 3344555553332
Q ss_pred ------CCCCCHHHHHHHHHHHHhhCCCCCCcccHHH-HHHHHHHhcC-------CChHHHHHHHHHHhcCCCCCcccHH
Q 002259 219 ------GMRDSKEFALELFDALSRRRRLKVDKISREE-LYEYWSQITD-------QSFDSRLQIFFDMVDKNEDGRIAEE 284 (946)
Q Consensus 219 ------~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~E-f~~~l~~l~~-------~~~~~~l~~~F~~~D~dgdG~Is~e 284 (946)
|..+..-...+-|. . + ..+...+ ++.-...... ..-.+.+..+|..||.|+||.++.+
T Consensus 264 ~lfiergr~EttW~iLR~fg----Y--~--DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~ 335 (625)
T KOG1707|consen 264 TLFIERGRHETTWTILRKFG----Y--T--DSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPE 335 (625)
T ss_pred HHHHHhccccchhhhhhhcC----C--c--chhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHH
Confidence 11111111111111 0 0 1111111 1110000000 0113468999999999999999999
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 285 EVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 285 E~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
|+..+...+....-.....+ +..-.+..|.++++-|.....
T Consensus 336 El~~LF~~~P~~pW~~~~~~----------~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 336 ELKDLFSTAPGSPWTSSPYK----------DSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHhhhCCCCCCCCCccc----------ccceecccceeehhhHHHHHH
Confidence 99998875433221110000 001123579999998876543
No 195
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=89.41 E-value=0.98 Score=39.93 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
+++.+|+.|-. +.+.||.++|.++|...=....++ .+++.++++..-..-.....+.+++++|...|.-..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~--~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLT--DEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSS--HHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCc--HHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46788888844 678899999999986432222222 444444443311111112469999999999886544
No 196
>PLN02952 phosphoinositide phospholipase C
Probab=87.10 E-value=3.4 Score=49.98 Aligned_cols=91 Identities=8% Similarity=0.080 Sum_probs=61.8
Q ss_pred CcccHHHHHHHHHHhcC--CChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcC--
Q 002259 243 DKISREELYEYWSQITD--QSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELD-- 318 (946)
Q Consensus 243 G~Is~~Ef~~~l~~l~~--~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D-- 318 (946)
|.++|+||..+.+.+.. .....+++.+|..|-. +++.++.+||..+|...=.+...+ .+.++++++.+++...
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~--~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCT--LAEAQRIVEEVINRRHHV 91 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCC--HHHHHHHHHHHHhhcccc
Confidence 89999999998887743 3467889999999954 446899999999997432222222 3445555555443322
Q ss_pred -CCCCCcccHHHHHHHHHh
Q 002259 319 -PEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 319 -~d~dG~Is~eEF~~ll~~ 336 (946)
..+.+.++++.|...|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 123356899999998874
No 197
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=86.46 E-value=3.5 Score=48.88 Aligned_cols=147 Identities=8% Similarity=0.099 Sum_probs=95.0
Q ss_pred hhHHHHHHHHhccc--CCCcccHHHh----hhhhCCCCCHHHHHHHHHHHHhhC--CCCCCcccHHHHHHHHHHhcCCCh
Q 002259 191 DAWNEVQSNFNKLA--KGGFLYRADF----AQCIGMRDSKEFALELFDALSRRR--RLKVDKISREELYEYWSQITDQSF 262 (946)
Q Consensus 191 ~~~~~l~~~F~~ld--~dG~I~~~eF----~~~l~~~~~~~~~~~lF~~l~d~d--~d~~G~Is~~Ef~~~l~~l~~~~~ 262 (946)
.....+.+.|..-| .||.++=.|+ ..|++......+++.+-..+.+.- +-..+.++...|+.....+-+...
T Consensus 192 ~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr 271 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGR 271 (625)
T ss_pred HHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcc
Confidence 44567888888777 8899987776 456776655555665655554332 222366788888777665544444
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCC
Q 002259 263 DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDT 339 (946)
Q Consensus 263 ~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~ 339 (946)
.+-.-.+-+.|-.+.+=.++.+=+..-+. .......++....-+.+..+|+++|.|+||-++=+|+..+....|.
T Consensus 272 ~EttW~iLR~fgY~DsleL~~~~l~p~~~--~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 272 HETTWTILRKFGYTDSLELTDEYLPPRLK--VPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred ccchhhhhhhcCCcchhhhhhhhcCcccc--CCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 44455566666556555555443332222 1112222233456677788999999999999999999999998884
No 198
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=86.12 E-value=1.6 Score=47.62 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=71.6
Q ss_pred HHHHHHHhccc--CCCcccHHHhhhhh----CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHH
Q 002259 194 NEVQSNFNKLA--KGGFLYRADFAQCI----GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQ 267 (946)
Q Consensus 194 ~~l~~~F~~ld--~dG~I~~~eF~~~l----~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~ 267 (946)
..+.+.|..+| ++|.+++.|....+ +.....+.++-.|+ +++.+.| |.+.-.+|..++... .+..+=++-
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk-~f~v~eD--g~~ge~~ls~ilq~~-lgv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFK-RFSVAED--GISGEHILSLILQVV-LGVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHH-hcccccc--cccchHHHHHHHHHh-cCcceeecc
Confidence 56788888888 89999988876554 44445566777788 4557777 899988887777542 233333567
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 268 IFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 268 ~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
.+|...|...||+|+++||+.++..
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHh
Confidence 7899999999999999999999863
No 199
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=85.69 E-value=2.4 Score=49.16 Aligned_cols=24 Identities=33% Similarity=0.489 Sum_probs=17.3
Q ss_pred hcccchhhHHHHHHHHHHHHHHHH
Q 002259 378 LQENWRRLWVLSLWILIMIGLFTW 401 (946)
Q Consensus 378 ~~~~~~~~~~i~~~~~~~i~l~~~ 401 (946)
+.+-+.++++=++|-+|-++||+-
T Consensus 215 l~eGrphLVLGLiwQiIkigllad 238 (627)
T KOG0046|consen 215 LAEGRPHLVLGLIWQIIKIGLLAD 238 (627)
T ss_pred hhcCCceeeHHHHHHHHHHHHhhh
Confidence 455666776667888888888863
No 200
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=84.79 E-value=5.2 Score=40.35 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcc-cccchHHHHHHHHH-HHHHHcCCCCCCcccHHHHHHH
Q 002259 263 DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASAN-KLSRLKEQAEEYAA-LIMEELDPEGLGYIELWQLETL 333 (946)
Q Consensus 263 ~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~-~l~~~~e~~~~~~~-~if~e~D~d~dG~Is~eEF~~l 333 (946)
.++.+++|..|++.+.+.+|..|+.+|++...... -.. .....++ .+.-.+-.|.||.+.-|+.+.+
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~G----W~a~~~EW~~~y~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFG----WFAAFFEWGALYILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcch----hhhhhhHHHHHHHHHcCcCCcEeHHHHhhh
Confidence 46899999999999889999999999997422111 111 1111111 0112234577899988877665
No 201
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.67 E-value=2.8 Score=39.05 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=39.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhcC----------CChHHHHHHHHH----HhcCCCCCcccHHHHHH
Q 002259 230 LFDALSRRRRLKVDKISREELYEYWSQITD----------QSFDSRLQIFFD----MVDKNEDGRIAEEEVKE 288 (946)
Q Consensus 230 lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~----------~~~~~~l~~~F~----~~D~dgdG~Is~eE~~~ 288 (946)
.|. +-|.|+| +.|+=-|+..++...-+ -.++.++..+.+ --|.|+||+|++.||..
T Consensus 72 YF~-MHDldkn--n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 72 YFS-MHDLDKN--NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhh-hhccCcC--CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 566 4556766 89998899888775432 134556665555 45889999999999764
No 202
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=82.61 E-value=2.5 Score=37.32 Aligned_cols=62 Identities=13% Similarity=0.277 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcC--CChHHHHHHHHHHhcCC----CCCcccHHHHHHHHHH
Q 002259 227 ALELFDALSRRRRLKVDKISREELYEYWSQITD--QSFDSRLQIFFDMVDKN----EDGRIAEEEVKEIIML 292 (946)
Q Consensus 227 ~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~--~~~~~~l~~~F~~~D~d----gdG~Is~eE~~~~l~~ 292 (946)
+..+|+.+.. +. +.+|.++|..+|..-.. ..+++.++.+|+.|..+ ..+.+|.++|...|..
T Consensus 2 i~~if~~ys~--~~--~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS--DK--EYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT--TS--SSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC--CC--CcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 4667886642 23 89999999999985433 34688899999999665 4799999999999963
No 203
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=82.07 E-value=1 Score=49.16 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
-+..-|..+|+|.++.|.+.|++-+=.......+ .......+++.-|.|+|-.|+++|+...+...+
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~-------~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK-------PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhcc-------HHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 3677899999999999999998776654444322 345567789999999999999999999988776
No 204
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=80.82 E-value=1.5 Score=48.11 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhC
Q 002259 263 DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQK 337 (946)
Q Consensus 263 ~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~ 337 (946)
.+.+..||..+|.|.||.++..|+..+-. + +-+..+..+|..-|...||.|+-.|+...+.+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l--------d----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL--------D----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc--------c----CchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 56799999999999999999999887652 1 234455668888999999999999999877653
No 205
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=77.59 E-value=18 Score=45.40 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=59.0
Q ss_pred HHHHHHHhccc--CCCcccHHHhhhhh---CCCC--CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hcCCChHHH
Q 002259 194 NEVQSNFNKLA--KGGFLYRADFAQCI---GMRD--SKEFALELFDALSRRRRLKVDKISREELYEYWSQ-ITDQSFDSR 265 (946)
Q Consensus 194 ~~l~~~F~~ld--~dG~I~~~eF~~~l---~~~~--~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~-l~~~~~~~~ 265 (946)
.++...|+.++ ..|.++.++|..|+ |..- .++...+.|.++...|.+.-|.+++.||...|.. ....+.+.+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r 826 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELR 826 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHH
Confidence 45666666666 45568888887775 2221 1234556777666555544477888888877764 334455667
Q ss_pred HHHHHHHhcCCCCCcccHHHHHH
Q 002259 266 LQIFFDMVDKNEDGRIAEEEVKE 288 (946)
Q Consensus 266 l~~~F~~~D~dgdG~Is~eE~~~ 288 (946)
+...|+.+=++.. +|..|||..
T Consensus 827 ~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 827 AILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHcchh-HHHHHHHHh
Confidence 7777777755544 677777665
No 206
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=73.36 E-value=14 Score=45.26 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 002259 226 FALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIML 292 (946)
Q Consensus 226 ~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~ 292 (946)
.+..+|+ -.|++.+ |.+++.|-..++..+.-...+.+++..|+..|..++|++..+|+.++-..
T Consensus 137 wi~~~~~-~ad~~~~--~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 137 WIHSIFQ-EADKNKN--GHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHH-HHccccc--cccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 3444555 3335555 99999999999999988888899999999999999999999999887753
No 207
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=72.53 E-value=25 Score=31.86 Aligned_cols=70 Identities=9% Similarity=0.164 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhh-------cccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 263 DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSAS-------ANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 263 ~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~-------~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
++|.+.+|+.+ .|.+|.++..-|..++..++. ..... .++..++..|+.. ...-.|+.++|...|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg----~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFG----YIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT------HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCcccccc----CcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 57899999999 788999999999888853221 11222 2566777788876 2456799999999998
Q ss_pred hCCC
Q 002259 336 QKDT 339 (946)
Q Consensus 336 ~~p~ 339 (946)
..|-
T Consensus 75 ~ePq 78 (90)
T PF09069_consen 75 SEPQ 78 (90)
T ss_dssp T--T
T ss_pred hCCC
Confidence 8773
No 208
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=69.94 E-value=2.7 Score=46.00 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=44.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhcCCC-hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 002259 230 LFDALSRRRRLKVDKISREELYEYWSQITDQS-FDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLS 293 (946)
Q Consensus 230 lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~-~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~ 293 (946)
-|..|+ .+.+ +.|+..|+.-+-..+.+.. ...-.+.+|+.+|.|+|-.||.+|++..|...
T Consensus 338 ~F~qLd-kN~n--n~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 338 YFNQLD-KNSN--NDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeec-cccc--CccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 355333 4444 8999999877655544433 33457889999999999999999999998643
No 209
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=69.49 E-value=28 Score=34.85 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh---cCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh
Q 002259 228 LELFDALSRRRRLKVDKISREELYEYWSQI---TDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSA 294 (946)
Q Consensus 228 ~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l---~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~ 294 (946)
+++|..+...-..+...++-..|..++... ....+...+..+|..+-..+..+|++++|.++|....
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 456665543222223678888888888743 3345667788888887666667799999888886433
No 210
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=64.73 E-value=19 Score=40.06 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=11.8
Q ss_pred HHHHHHHHhhccCCCchhchhhHhh
Q 002259 155 RALRKQRAQLDRTRSGAQKALRGLR 179 (946)
Q Consensus 155 r~~~~~f~~~D~d~sG~~~a~e~l~ 179 (946)
.+++..|..+=.+.++...+..+.+
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~ 235 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHS 235 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcc
Confidence 3444555555455554444444333
No 211
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=63.82 E-value=32 Score=34.86 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=70.4
Q ss_pred HHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhccc-----CCCcccH-------HHhhhhh-CCC---
Q 002259 158 RKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLA-----KGGFLYR-------ADFAQCI-GMR--- 221 (946)
Q Consensus 158 ~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld-----~dG~I~~-------~eF~~~l-~~~--- 221 (946)
++--.-||+|+||.|.+.|--.-++.+|-..-- .-+...+-... ..+.+.- +.+-++. |..
T Consensus 10 QqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~---s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 10 QQHVAFFDRDKDGIIYPWDTYQGFRALGFGILL---SLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred hhhhceeCCCCCeeECHHHHHHHHHHhCCCHHH---HHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 556678999999999999887766665421111 11111111111 2232221 2222221 111
Q ss_pred -CC-----HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcC-------CChHHHHHHHHHHhcCCCCCcccHHHHHH
Q 002259 222 -DS-----KEFALELFDALSRRRRLKVDKISREELYEYWSQITD-------QSFDSRLQIFFDMVDKNEDGRIAEEEVKE 288 (946)
Q Consensus 222 -~~-----~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~-------~~~~~~l~~~F~~~D~dgdG~Is~eE~~~ 288 (946)
+. .+-.++||...+ +.+. +.+|+.|+.+++..=.+ ....-+-..++-+. +|.||++.+|+++.
T Consensus 87 YD~eGrFvp~kFe~iF~kya-~~~~--d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYA-KTGP--DALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRG 162 (174)
T ss_pred cccCCcCCHHHHHHHHHHhC-CCCC--CCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhh
Confidence 11 124556777443 3333 89999999998874111 11123445566666 67889999999998
Q ss_pred HHH
Q 002259 289 IIM 291 (946)
Q Consensus 289 ~l~ 291 (946)
+..
T Consensus 163 vYD 165 (174)
T PF05042_consen 163 VYD 165 (174)
T ss_pred hcc
Confidence 874
No 212
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.12 E-value=14 Score=44.95 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhccCCCchhchhhHhhhhhccCCCCChhhHHHHHHHHhcccCCCcccHHHhhhhh
Q 002259 154 ARALRKQRAQLDRTRSGAQKALRGLRFISNSSKTNGVDAWNEVQSNFNKLAKGGFLYRADFAQCI 218 (946)
Q Consensus 154 ~r~~~~~f~~~D~d~sG~~~a~e~l~~i~~~~~~~~~~~~~~l~~~F~~ld~dG~I~~~eF~~~l 218 (946)
.++++.+|+.+|+..+|.++.......+...+ .....+..++..-+ .|+||+++.+||.-+|
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsD-vd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSD-VDGDGKLSADEFILAM 255 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeec-cCCCCcccHHHHHHHH
Confidence 57899999999999999999998888776432 44444444444332 2399999999997665
No 213
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=61.04 E-value=19 Score=45.95 Aligned_cols=59 Identities=7% Similarity=0.148 Sum_probs=42.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 269 FFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 269 ~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
-|+.||.||.|.|++.||...|... .... + ..++.++.-+..|.+...+|+||..-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~---k~yt--q----se~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH---KHYT--Q----SEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc---ccch--h----HHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 4888999999999999999999631 1122 1 22344555567777888999999886643
No 214
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=57.72 E-value=3.2 Score=35.54 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 261 SFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 261 ~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
.+.+++..+|+.+ .++.++||.+||++.+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 3457899999999 88899999999998763
No 215
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=54.50 E-value=1.2e+02 Score=31.97 Aligned_cols=23 Identities=17% Similarity=0.259 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHH-HHHHhh
Q 002259 562 FNAFWYSHHLFVIVYIL-LIVHGI 584 (946)
Q Consensus 562 Ye~F~~~H~l~~i~~il-l~~H~~ 584 (946)
.+.....|.+.++++++ +++|..
T Consensus 146 ~~~~~~~H~~~a~~~i~~iivHiy 169 (211)
T PRK10639 146 IRFALMLHSFAAVALIVVIMVHIY 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999887665 467754
No 216
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=51.47 E-value=1.5e+02 Score=37.44 Aligned_cols=126 Identities=13% Similarity=0.189 Sum_probs=80.6
Q ss_pred CCCcccHHHhhhhhCCCCCHHHHHHHHHHHHhhC--CCCCCcc-----cHHHHHHHHHHhcCCChHHHHHHHHHHhcCCC
Q 002259 205 KGGFLYRADFAQCIGMRDSKEFALELFDALSRRR--RLKVDKI-----SREELYEYWSQITDQSFDSRLQIFFDMVDKNE 277 (946)
Q Consensus 205 ~dG~I~~~eF~~~l~~~~~~~~~~~lF~~l~d~d--~d~~G~I-----s~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dg 277 (946)
..|+|..+.+.+.+...-. + +++..++...- .+.+..| +++.|..++..++ ...+++.+|..+--|+
T Consensus 161 ~~grip~knI~k~F~~~k~-~--KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc---pR~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 161 FEGRIPVKNIIKTFSADKK-E--KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC---PRPEIEEIFRKISGKK 234 (1189)
T ss_pred ccccccHHHHHHHhhcCCc-h--hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC---CchhHHHHHHHhccCC
Confidence 6799999999888854322 1 45556554321 1111334 4555566666554 3457999999998888
Q ss_pred CCcccHHHHHHHHHHhhhcccccchH--HHHHHHHHHHHHHcCCCCC----CcccHHHHHHHHHh
Q 002259 278 DGRIAEEEVKEIIMLSASANKLSRLK--EQAEEYAALIMEELDPEGL----GYIELWQLETLLLQ 336 (946)
Q Consensus 278 dG~Is~eE~~~~l~~~~~~~~l~~~~--e~~~~~~~~if~e~D~d~d----G~Is~eEF~~ll~~ 336 (946)
.-++|.++|..+|...-....|..+- ---.+-+..+++++.+|++ |.|+-+-|...+..
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 88999999999996432222222110 0012234567888888776 89999999987765
No 217
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.26 E-value=13 Score=47.31 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 264 SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 264 ~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
.+...+|...|.+.||.|+..+...+++. .++.. +.+..+-...|.++.|.+++++|.-.|....
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~~------~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLSK------PRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc----CCCCh------hhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 34566899999999999999998888853 34441 2234556678999999999998877665443
No 218
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=50.64 E-value=20 Score=43.17 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHhcCC-ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCC
Q 002259 245 ISREELYEYWSQITDQ-SFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLG 323 (946)
Q Consensus 245 Is~~Ef~~~l~~l~~~-~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG 323 (946)
|+++.|..+...+... .+..-++.+|+.+|.+++|.||+.++..-+.....+ .+.+.+..+|+-+|++.|
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~--------~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG--------DALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh--------hHHHHHHHHHhhccCCcc-
Confidence 4455555554443332 233458889999999999999999988877643332 233445577888999988
Q ss_pred cccHHHH
Q 002259 324 YIELWQL 330 (946)
Q Consensus 324 ~Is~eEF 330 (946)
..+.+|-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 7777665
No 219
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=50.52 E-value=34 Score=43.11 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCC
Q 002259 263 DSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDT 339 (946)
Q Consensus 263 ~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~ 339 (946)
.++++..|+.+|+...|.++.+|+...++.... +... +++..+....++.+.|.+.-|.+++.+|...|.+...
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~--~~e~-ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGY--NTEE-EEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc--ccch-hHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 357999999999999999999999999874322 2221 4667777778888999999999999999998876543
No 220
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=46.65 E-value=1.9e+02 Score=27.89 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=59.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH--hc-----CCChHHHHHHHHHHhcCCC--CCcccHHHHHHHHHHhhh----
Q 002259 229 ELFDALSRRRRLKVDKISREELYEYWSQ--IT-----DQSFDSRLQIFFDMVDKNE--DGRIAEEEVKEIIMLSAS---- 295 (946)
Q Consensus 229 ~lF~~l~d~d~d~~G~Is~~Ef~~~l~~--l~-----~~~~~~~l~~~F~~~D~dg--dG~Is~eE~~~~l~~~~~---- 295 (946)
++++.+.+. +.|-|.-|+.+++- +. +...-..+.++|+....++ |..|+..|+..++.....
T Consensus 4 ~l~~~l~~~-----n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~ 78 (127)
T PF09068_consen 4 ELMQELQDF-----NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNK 78 (127)
T ss_dssp HHHHHGGGG-----TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 456655332 35778888877651 11 2223345777888876654 578999999999964431
Q ss_pred -cccccch-----HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHH
Q 002259 296 -ANKLSRL-----KEQAEEYAALIMEELDPEGLGYIELWQLETLLL 335 (946)
Q Consensus 296 -~~~l~~~-----~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~ 335 (946)
......+ +.-.+-.+..++.-+|+++.|.|..-.|+..+.
T Consensus 79 ~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 79 RLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 1111211 133455667788899999999999999987663
No 221
>PLN02952 phosphoinositide phospholipase C
Probab=45.45 E-value=79 Score=38.65 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=54.8
Q ss_pred CCCcccHHHhhhhh---CCCC--CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCC--ChHHHHHHHHHHhc---
Q 002259 205 KGGFLYRADFAQCI---GMRD--SKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQ--SFDSRLQIFFDMVD--- 274 (946)
Q Consensus 205 ~dG~I~~~eF~~~l---~~~~--~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~--~~~~~l~~~F~~~D--- 274 (946)
+.|.+++++|..+. .... ..+++.++|..+. .++ +.++.++|..++...... ...+.++.+|+.+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~--~~~--~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFS--VGG--GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHh--CCC--CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhc
Confidence 56899999997553 2221 3467888888665 222 689999999999876432 34556666665441
Q ss_pred ----CCCCCcccHHHHHHHHH
Q 002259 275 ----KNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 275 ----~dgdG~Is~eE~~~~l~ 291 (946)
..+.+.++.++|...|.
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccccCcCHHHHHHHHc
Confidence 12334588888888885
No 222
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=44.35 E-value=1.3e+02 Score=30.28 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=22.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhc
Q 002259 461 DNINFHKTIAAAIVVGVILHVGNHLA 486 (946)
Q Consensus 461 ~~~~fHk~ig~~~~v~~~lH~~~~l~ 486 (946)
....+|+++|.+.++..+++.+..+.
T Consensus 45 ~~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 45 LLRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999987764
No 223
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=43.98 E-value=68 Score=32.05 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=42.6
Q ss_pred HHHHHHHh---cCCCCCcccHHHHHHHHHHhhhc-ccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 266 LQIFFDMV---DKNEDGRIAEEEVKEIIMLSASA-NKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 266 l~~~F~~~---D~dgdG~Is~eE~~~~l~~~~~~-~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
|+.+|..| -..+...++-.-|..+++-+--. .++. ...++.||.++-..+...|+|++|+.+|..
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t------~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLT------STDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-------HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCc------hHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 45566666 23444578999999999865322 2333 334667888876666677999999998875
No 224
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=43.81 E-value=2.1e+02 Score=28.71 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhh
Q 002259 463 INFHKTIAAAIVVGVILHVGNH 484 (946)
Q Consensus 463 ~~fHk~ig~~~~v~~~lH~~~~ 484 (946)
..+|.++|.++++..+++....
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888887755
No 225
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=41.46 E-value=73 Score=31.29 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=37.1
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCC-------CCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 002259 243 DKISREELYEYWSQITDQSFDSRLQIFFDMVDKNE-------DGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIME 315 (946)
Q Consensus 243 G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dg-------dG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~ 315 (946)
+.||.+||.+.-..+. .+ ..+++.+.+.|..|| ++.|++|.|+.+|+.-+..+ + -++.+..+|.
T Consensus 6 ~~lsp~eF~qLq~y~e-ys-~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d-~------P~~lc~hLF~ 76 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-YS-TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD-L------PEDLCQHLFL 76 (138)
T ss_dssp S-S-HHHHHHHHHHHH-H-----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S---------HHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH-HH-HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC-C------CHHHHHHHHH
Confidence 6788888877544332 21 235666666664333 46899999999998755543 3 3566777777
Q ss_pred HcCCC
Q 002259 316 ELDPE 320 (946)
Q Consensus 316 e~D~d 320 (946)
.+-..
T Consensus 77 sF~~~ 81 (138)
T PF14513_consen 77 SFQKK 81 (138)
T ss_dssp HS---
T ss_pred HHhCc
Confidence 66543
No 226
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=38.32 E-value=3.4e+02 Score=25.46 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccchhhhhcceeeecchhhhhhhhHHHHHHHhhhhhhhhhhcccccCccccCcchhhH
Q 002259 386 WVLSLWILIMIGLFTWKFFQYKHKDAFHVMGYCLLTAKGAAETLKFNMALILLPVCRNTITWLRSTRLGFFVPFDDNINF 465 (946)
Q Consensus 386 ~~i~~~~~~~i~l~~~~~~~y~~~~~~~~~g~~~~~ar~~a~~~~~n~~lill~~~Rn~l~~Lr~~~~~~~ip~d~~~~f 465 (946)
+.++.|+++.+.+..|....-.+. . ..+....+..-.||++.. -.-+++. ..=
T Consensus 3 lal~~~~aLi~l~~~w~~~~~p~~-~----------~~~~~~l~l~~lPLLl~l-----~Gll~g~-----------~~t 55 (109)
T PF09842_consen 3 LALASYFALILLLLLWELWLAPPE-L----------RPGGSWLALKLLPLLLPL-----PGLLRGR-----------PYT 55 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcc-c----------CcHHHHHHHHHHHHHHHH-----HHHHcCC-----------HHH
Confidence 456677777777777766533311 0 111222223445554432 1223432 456
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHhhhhhCCCCCchhhhcccchhhHHHHHHHHHHHHHHHhhHHH
Q 002259 466 HKTIAAAIVVGVILHVGNHLACDFPRLISSSESDYHRYLSSSFGKHKPTYWDLVKGAEGITGILMVIFMAIAFILATRWF 545 (946)
Q Consensus 466 Hk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s~~~~ 545 (946)
|.|.+.++.+.. +|++.... . .|. .-+.|++.+++.+++|+.++-++
T Consensus 56 ~~W~sfv~L~YF-~~gv~~a~--------~----------------~~~--------~~~~a~~e~~ls~~lF~~~~~y~ 102 (109)
T PF09842_consen 56 YAWASFVILLYF-IHGVTRAW--------S----------------DPG--------ERWLAWLELLLSVLLFVGAMLYA 102 (109)
T ss_pred HHHHHHHHHHHH-HHHHHHHh--------c----------------Ccc--------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888776 78876542 0 110 01356777777777788888888
Q ss_pred Hhh
Q 002259 546 RRN 548 (946)
Q Consensus 546 Rr~ 548 (946)
|-|
T Consensus 103 R~r 105 (109)
T PF09842_consen 103 RWR 105 (109)
T ss_pred HHH
Confidence 865
No 227
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=37.20 E-value=1.9e+02 Score=27.87 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=44.4
Q ss_pred HHHHHHHhccc----CCCcccHHHhhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHH--HHHHHHHHhcCCChHHHHH
Q 002259 194 NEVQSNFNKLA----KGGFLYRADFAQCIGMRDSKEFALELFDALSRRRRLKVDKISRE--ELYEYWSQITDQSFDSRLQ 267 (946)
Q Consensus 194 ~~l~~~F~~ld----~dG~I~~~eF~~~l~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~--Ef~~~l~~l~~~~~~~~l~ 267 (946)
..+.+.|+... .|..|+..|+..++ ..+|+.+..+.+ +..+.. ..... .+=-+.
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L---------~~iy~~l~~~~p---~~~~i~~~~v~~a--------~~L~ln 100 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLL---------SSIYEFLNKRLP---TLHQIPSRPVDLA--------VDLLLN 100 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHH---------HHHHHHHHHHST---TS--HH-----HH--------HHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHH---------HHHHHHHHHHCC---CCCCCCchhHHHH--------HHHHHH
Confidence 44566666554 36677777777664 457765553333 222221 11111 112378
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHH
Q 002259 268 IFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 268 ~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
++..+||.+++|+|+.-+++..+.
T Consensus 101 ~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 101 WLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHhCCCCCCeeehhHHHHHHH
Confidence 899999999999999999988774
No 228
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.77 E-value=49 Score=38.46 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=23.3
Q ss_pred CCCcccHHHhhhhhC-CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002259 205 KGGFLYRADFAQCIG-MRDSKEFALELFDALSRRRRLKVDKISREELYEYWS 255 (946)
Q Consensus 205 ~dG~I~~~eF~~~l~-~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~ 255 (946)
-.|.|+=.--++++. .+..-+++..||+ |.|.|.| |.+++.||..++.
T Consensus 244 p~gfisGsaAknFFtKSklpi~ELshIWe-LsD~d~D--GALtL~EFcAAfH 292 (737)
T KOG1955|consen 244 PHGFISGSAAKNFFTKSKLPIEELSHIWE-LSDVDRD--GALTLSEFCAAFH 292 (737)
T ss_pred cccccccHHHHhhhhhccCchHHHHHHHh-hcccCcc--ccccHHHHHhhHh
Confidence 345555444333331 1222234455555 5555555 6666666665554
No 229
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=36.47 E-value=41 Score=21.93 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=11.9
Q ss_pred cCCCCCcccHHHHHHHH
Q 002259 274 DKNEDGRIAEEEVKEII 290 (946)
Q Consensus 274 D~dgdG~Is~eE~~~~l 290 (946)
|.|+||.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 67888988877766443
No 230
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=35.88 E-value=1.2e+02 Score=27.89 Aligned_cols=63 Identities=22% Similarity=0.188 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 264 SRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 264 ~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
.+++.=|+.+-. ||++.+++|-++|-+. .++|-+.++.+.+-..=... ...|+.+|+..+..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIGM~-------dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIGMK-------DSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT---------S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcCCc-------ccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHH
Confidence 356677888765 7899999999988431 22444445544444433433 567999999887765
No 231
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=35.85 E-value=2.3e+02 Score=28.99 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhcccccccccCCchhhHHHhhhhhCCCCCchhhhcccchhhHHHHHHHHHHHHHHHh
Q 002259 462 NINFHKTIAAAIVVGVILHVGNHLACDFPRLISSSESDYHRYLSSSFGKHKPTYWDLVKGAEGITGILMVIFMAIAFILA 541 (946)
Q Consensus 462 ~~~fHk~ig~~~~v~~~lH~~~~l~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~tGii~lv~l~i~~~~s 541 (946)
....|..+|.+++.+..+=..+-.. +.| ..-.+.| ..|.+ ++|++++.+|++...++
T Consensus 79 ~r~~H~~~g~~ll~~~~L~~lGG~~-----------~~~-~~~~~lf--~spH~---------~~Gl~~~~L~~~s~al~ 135 (175)
T PF13301_consen 79 ARDRHYRLGFALLAFMGLGALGGQL-----------GTY-RQNGKLF--WSPHL---------WAGLAVVGLMAFSAALV 135 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcchH-----------HHH-HcCCCCc--cCchH---------HHHHHHHHHHHHHHHHH
Confidence 3578999998888776654443321 111 0001111 12333 57888888887765444
Q ss_pred hHHHHhhccCCCCCccccccchhHHHHHHHHHHH-HHHHHHHhh
Q 002259 542 TRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIV-YILLIVHGI 584 (946)
Q Consensus 542 ~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~-~ill~~H~~ 584 (946)
....+.+ -......|..+..+ ++++..|+.
T Consensus 136 ~~i~~g~-------------~~~~R~lHi~lN~~~l~Lf~~q~i 166 (175)
T PF13301_consen 136 PQIQKGN-------------RPWARRLHIYLNSLALLLFAWQAI 166 (175)
T ss_pred HHHccCC-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333311 23677899988665 445677765
No 232
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=34.14 E-value=52 Score=39.21 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 002259 265 RLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQ 336 (946)
Q Consensus 265 ~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~ 336 (946)
..+.-|..+|.|..|+++.+++.++|+... .+.+ ++. .+.+..++|.+-.|+++.+||.+++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d--~~~----~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWD--EDR----LHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCC--HHH----HHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 345679999999999999999999997533 1333 333 344566688888999999998887754
No 233
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.87 E-value=60 Score=37.79 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh-hhccccc
Q 002259 225 EFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLS-ASANKLS 300 (946)
Q Consensus 225 ~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~-~~~~~l~ 300 (946)
++...-|+.+- .|-. |.|+=.--+.++.+ ....-++|..+.++.|.|.||-++.+||...+.+. +..|+..
T Consensus 231 eYYvnQFrtvQ-pDp~--gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaRkNgyp 302 (737)
T KOG1955|consen 231 EYYVNQFRTVQ-PDPH--GFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVARKNGYP 302 (737)
T ss_pred HHHHhhhhccc-CCcc--cccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhheeecccCCC
Confidence 34444566443 4544 88876655555543 23456789999999999999999999999998643 2344444
No 234
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=31.03 E-value=1.2e+02 Score=28.32 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhccCCCCCccccccchhHHHHHHHHHHH-HHHHHHHhhh
Q 002259 527 GILMVIFMAIAFILATRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIV-YILLIVHGIL 585 (946)
Q Consensus 527 Gii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~-~ill~~H~~~ 585 (946)
|+++++.+.+.++++ .|++.+. .....+++.+...|..++.+ +++..+|+..
T Consensus 2 G~~a~~~l~~~~~l~---~R~~~l~----~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~ 54 (125)
T PF01794_consen 2 GILAFALLPLVFLLG---LRNSPLA----RLTGISFDRLLRFHRWLGRLAFFLALLHGVL 54 (125)
T ss_pred HHHHHHHHHHHHHHH---HhhhHHH----HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555554 2332211 01123688999999988775 4456899864
No 235
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=29.40 E-value=6.4e+02 Score=29.31 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=47.6
Q ss_pred CCCcccHHHhhhhhCCCC-------CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hcCCChHHHHHHHHHHhcCC
Q 002259 205 KGGFLYRADFAQCIGMRD-------SKEFALELFDALSRRRRLKVDKISREELYEYWSQ-ITDQSFDSRLQIFFDMVDKN 276 (946)
Q Consensus 205 ~dG~I~~~eF~~~l~~~~-------~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~-l~~~~~~~~l~~~F~~~D~d 276 (946)
||-..+..||+++..... +-+.+..|-+.++ .| .+|.|+.+|=-.+++. +.......+=++.|.-
T Consensus 41 gds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmD-DD--~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~---- 113 (575)
T KOG4403|consen 41 GDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMD-DD--HNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG---- 113 (575)
T ss_pred CCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcc-cc--cCCCcccccchHHHHHHhhcccchhhhhhhccC----
Confidence 565667777766542211 1133444555444 33 3499999987777763 3333333444445544
Q ss_pred CCCcccHHHHHHHHHHh
Q 002259 277 EDGRIAEEEVKEIIMLS 293 (946)
Q Consensus 277 gdG~Is~eE~~~~l~~~ 293 (946)
.|-.||.+|+-+.-...
T Consensus 114 dD~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 114 DDKHITVEDLWEAWKES 130 (575)
T ss_pred CccceeHHHHHHHHHhh
Confidence 35689999998887643
No 236
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=29.01 E-value=1.5e+02 Score=27.05 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCcccHHHhhhhh-----CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhc-CCChHHHHHHHHHHhcCCCCC
Q 002259 206 GGFLYRADFAQCI-----GMRDSKEFALELFDALSRRRRLKVDKISREELYEYWSQIT-DQSFDSRLQIFFDMVDKNEDG 279 (946)
Q Consensus 206 dG~I~~~eF~~~l-----~~~~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~-~~~~~~~l~~~F~~~D~dgdG 279 (946)
||.++.+|...+- -+..+.+...++.. .+....+ ...++.+|...+.... ......-++.++++ ...||
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~v--A~ADG 87 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLA-EAEALEE--EAPDLYEFTSLIKEHFDYEERLELVEALWEV--AYADG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHH-HHHHHHH--hCCCHHHHHHHHHHhCCHHHHHHHHHHHHHH--HHhcC
Q ss_pred cccHHHHHHHHH
Q 002259 280 RIAEEEVKEIIM 291 (946)
Q Consensus 280 ~Is~eE~~~~l~ 291 (946)
.++..|-.-+-+
T Consensus 88 ~~~~~E~~~l~~ 99 (104)
T cd07313 88 ELDEYEEHLIRR 99 (104)
T ss_pred CCCHHHHHHHHH
No 237
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=28.18 E-value=60 Score=27.10 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhh
Q 002259 461 DNINFHKTIAAAIVVGVILHVGNH 484 (946)
Q Consensus 461 ~~~~fHk~ig~~~~v~~~lH~~~~ 484 (946)
....+|.|.|.++++++++|.+.|
T Consensus 40 ~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 40 FWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999999999865
No 238
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.49 E-value=6.6e+02 Score=33.81 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002259 465 FHKTIAAAIVVGVILHVG 482 (946)
Q Consensus 465 fHk~ig~~~~v~~~lH~~ 482 (946)
.-|++|.+++++++.+..
T Consensus 113 ~lRliGlLLLLLas~gLa 130 (1355)
T PRK10263 113 SLRIIGVLALILTSCGLA 130 (1355)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346677776665555443
No 239
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=26.69 E-value=2.1e+02 Score=28.29 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCCCc
Q 002259 303 KEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDTY 340 (946)
Q Consensus 303 ~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p~~ 340 (946)
++|+.+.++.|++-+..++ ++=|+++.++.+.|.|
T Consensus 130 k~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY 164 (175)
T PF04876_consen 130 KDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAY 164 (175)
T ss_pred HHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHH
Confidence 5566677777777665442 4668899999999975
No 240
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=26.37 E-value=74 Score=27.79 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=18.1
Q ss_pred CCCCCCCcCCeEEEEEeecCCCeEEE
Q 002259 28 PGTESNSAEEYVEVTIDLQDDDTIVL 53 (946)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (946)
-|+.|.+-..++||.+|-+ +|++.+
T Consensus 32 KGetSG~~q~v~~i~~DCD-~D~ll~ 56 (75)
T PF01502_consen 32 KGETSGNTQKVVEIRLDCD-GDALLF 56 (75)
T ss_dssp TTTTTS--EEEEEEEE-TT-SSEEEE
T ss_pred EECCCCCEEEEEEEEecCC-CCeEEE
Confidence 3677888899999999999 898544
No 241
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=25.55 E-value=73 Score=27.96 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcc---cHHHHHHHHHH
Q 002259 244 KISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRI---AEEEVKEIIML 292 (946)
Q Consensus 244 ~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~I---s~eE~~~~l~~ 292 (946)
.++|.+.+.+..+..... --.+|+.=|.||| +| |-||++.||.+
T Consensus 22 ~L~F~DvL~~I~~vlp~a----T~tAFeYEDE~gD-RITVRSDeEm~AMlsy 68 (91)
T cd06395 22 QLLFRDVLDVIGQVLPEA----TTTAFEYEDEDGD-RITVRSDEEMKAMLSY 68 (91)
T ss_pred cccHHHHHHHHHHhcccc----cccceeeccccCC-eeEecchHHHHHHHHH
Confidence 499999999888754332 2357888899988 46 56799988864
No 242
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=25.10 E-value=58 Score=31.99 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=35.4
Q ss_pred CcccHHHhhhhhCCC-CCHHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHHhcC-CChHHHHHHHHHHhcCCC
Q 002259 207 GFLYRADFAQCIGMR-DSKEFALELFDALSRRRR-----LKVDKISREELYEYWSQITD-QSFDSRLQIFFDMVDKNE 277 (946)
Q Consensus 207 G~I~~~eF~~~l~~~-~~~~~~~~lF~~l~d~d~-----d~~G~Is~~Ef~~~l~~l~~-~~~~~~l~~~F~~~D~dg 277 (946)
+.|+.+||.++=... -+..-++.+...|. .+| +..+.|+|+.|+.+|...-+ ..+++-++.+|..|=+..
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~-~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFH-GDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH--HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 568888887763211 01112333333232 121 12368999999999986543 466778999999995543
No 243
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=24.86 E-value=1.6e+02 Score=33.71 Aligned_cols=57 Identities=25% Similarity=0.458 Sum_probs=37.6
Q ss_pred cchhhHHHHHHHHHHHHHHHhhHHHHhhccCCCCCccccccchhHHHHHHHHHHH-HHHHHHHhhh
Q 002259 521 GAEGITGILMVIFMAIAFILATRWFRRNLIKLPKPFDRLTGFNAFWYSHHLFVIV-YILLIVHGIL 585 (946)
Q Consensus 521 ~~~g~tGii~lv~l~i~~~~s~~~~Rr~~~~~~~~~~r~~~Ye~F~~~H~l~~i~-~ill~~H~~~ 585 (946)
...-.+|++++++|.+++.++++..+-- ++++ +-+.-|..|...+++ ++++++|...
T Consensus 39 ~~~qf~g~iaL~~msl~~~LA~R~~~iE-----~~~~---GlD~~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 39 EFSQFLGFIALALMSLIFLLATRLPLIE-----AWFN---GLDKIYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHh-----hhhh---hhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3345788999999998888886654421 1111 346667889988775 4556888763
No 244
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=24.74 E-value=1.9e+02 Score=30.29 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 002259 464 NFHKTIAAAIVVGVILHVGNH 484 (946)
Q Consensus 464 ~fHk~ig~~~~v~~~lH~~~~ 484 (946)
.+-||.....++.+.+|.+.-
T Consensus 54 ~L~~w~l~Wl~vsGlih~v~e 74 (229)
T KOG4826|consen 54 VLDKWVLCWLAVSGLIHLVLE 74 (229)
T ss_pred CCcchhhHHHHhhCeeeeEEE
Confidence 345777788888888998743
No 245
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=23.71 E-value=88 Score=23.25 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 002259 462 NINFHKTIAAAIVVGVIL 479 (946)
Q Consensus 462 ~~~fHk~ig~~~~v~~~l 479 (946)
....|+|+|.++.++..+
T Consensus 4 ~~~~H~W~Gl~~g~~l~~ 21 (37)
T PF13706_consen 4 LRKLHRWLGLILGLLLFV 21 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357899999987765543
No 246
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=23.35 E-value=1.5e+02 Score=27.59 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhh----hcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 002259 271 DMVDKNEDGRIAEEEVKEIIMLSA----SANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKD 338 (946)
Q Consensus 271 ~~~D~dgdG~Is~eE~~~~l~~~~----~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ll~~~p 338 (946)
++||.+..-+||.++++++++..- ..++.. ++.-..++.+|+-|-...+...++.+-+..+++-+-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg--eDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG--DDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC--chhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 468999999999999999996321 112222 333445555666665566777788777777777654
No 247
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=23.34 E-value=1.7e+02 Score=25.22 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=31.7
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhh
Q 002259 243 DKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSA 294 (946)
Q Consensus 243 G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~ 294 (946)
-.++|..+..+++..... +++..+...|+.=..+.|+++||.+.|+.-.
T Consensus 7 p~~~F~~L~~~l~~~l~~---~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPP---SKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred CcccHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 457777777766654433 3444444444444678999999999987543
No 248
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=22.17 E-value=2.1e+02 Score=32.50 Aligned_cols=63 Identities=19% Similarity=0.388 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 002259 227 ALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIM 291 (946)
Q Consensus 227 ~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~ 291 (946)
...+|+.+-.+..+ ..++++.+.........+..+++.+.+..+.|.+|+|......+.+.|.
T Consensus 59 ~q~~f~~vk~~~q~--~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~ 121 (427)
T KOG2557|consen 59 GQRMFDMVKQRRQD--DKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLV 121 (427)
T ss_pred cceEeeeccCccCC--ccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 34456644323332 5788888777666556667778888999999999999999998888885
No 249
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=22.05 E-value=8.8e+02 Score=24.96 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhh
Q 002259 462 NINFHKTIAAAIVVGVILHVGNHL 485 (946)
Q Consensus 462 ~~~fHk~ig~~~~v~~~lH~~~~l 485 (946)
...+|+++|.++++..++..+..+
T Consensus 48 ~~~~H~~~G~~~~~l~l~rl~~~~ 71 (211)
T TIGR02125 48 IRFVHFAAGFVLIAVLLFRVYLAF 71 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999998888887776544
No 250
>COG4485 Predicted membrane protein [Function unknown]
Probab=21.35 E-value=2.2e+02 Score=35.19 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhhcccccceee--ehhhhhhhhhhhcceeeeee
Q 002259 562 FNAFWYSHHLFVIVYILLIVHGILLFLVHKWYLKTTW--MYLAVPVLAYAGERTLRFFR 618 (946)
Q Consensus 562 Ye~F~~~H~l~~i~~ill~~H~~~~~~~~~w~~~~~w--~~~~~~~~l~~~dr~~R~~r 618 (946)
|..|-+.|.+-+..+..++.-+...... .+| .+++.|+++++++|+++--+
T Consensus 128 ~~~~~~ll~~~~st~~almsf~~Sqlei------~~WlDvfilLPLiIlGl~rli~ErK 180 (858)
T COG4485 128 FQKFSILLKLRISTFYALMSFGVSQLEI------YTWLDVFILLPLIILGLERLITERK 180 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheEEe------ehHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5666666665555555444333321111 133 24556888888888887543
No 251
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=21.31 E-value=4.4e+02 Score=33.16 Aligned_cols=138 Identities=13% Similarity=0.179 Sum_probs=68.6
Q ss_pred HHHHHHHhccc--CCCcccHHHhhhhhCCC----CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhcCCChHHHHH
Q 002259 194 NEVQSNFNKLA--KGGFLYRADFAQCIGMR----DSKEFALELFDALSRRRRLKVDKISREELYEYWSQITDQSFDSRLQ 267 (946)
Q Consensus 194 ~~l~~~F~~ld--~dG~I~~~eF~~~l~~~----~~~~~~~~lF~~l~d~d~d~~G~Is~~Ef~~~l~~l~~~~~~~~l~ 267 (946)
..+++.+-..+ ....|+..++...+... .+..+..+-|. .|+.+++.++|++|..+...+.-......+.
T Consensus 144 ~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~t----ed~~~k~dlsf~~f~~ly~~lmfs~~~a~l~ 219 (1267)
T KOG1264|consen 144 RWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFT----EDGARKDDLSFEQFHLLYKKLMFSQQKAILL 219 (1267)
T ss_pred HHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHh----HhhhccccccHHHHHHHHHHHhhccchhhhh
Confidence 45667777666 44568888888876321 12223333333 3444458999999988876543221111111
Q ss_pred H---HHHH--hcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHHh
Q 002259 268 I---FFDM--VDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPE-GLGYIELWQLETLLLQ 336 (946)
Q Consensus 268 ~---~F~~--~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d-~dG~Is~eEF~~ll~~ 336 (946)
. .|-. =|.-.--.++..||++++...-...-.+. ...+++......+..-.| ..-+++++||...+-.
T Consensus 220 e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asd-r~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 220 EFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASD-RNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred cccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhH-HHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhh
Confidence 1 1111 11111257899999999952111000000 011222222212111111 2357999999997743
No 252
>cd03497 SQR_TypeB_1_TM Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers,
Probab=20.39 E-value=8.3e+02 Score=25.62 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.5
Q ss_pred hHHHHHHHH-HHHHHHHhhhhhh
Q 002259 464 NFHKTIAAA-IVVGVILHVGNHL 485 (946)
Q Consensus 464 ~fHk~ig~~-~~v~~~lH~~~~l 485 (946)
..|-..|.+ .+++.+.|..+-+
T Consensus 8 ~~~slTGl~pL~lFl~~Hl~gN~ 30 (207)
T cd03497 8 RLHSLLGVVPIGLFLIEHLLTNS 30 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999 9999999998765
No 253
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.13 E-value=70 Score=36.12 Aligned_cols=65 Identities=26% Similarity=0.370 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHHHH
Q 002259 261 SFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQLET 332 (946)
Q Consensus 261 ~~~~~l~~~F~~~D~dgdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF~~ 332 (946)
...+.++..|+.+|..++|+|+-+-++.+|+.. |.+- .| .+++..+=..+|+.+-|.|-.++|..
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~---N~~v--se--~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL---NRLV--SE--PAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHh---cccc--cC--HHHHHHhcCccChhhcceEEeccccc
Confidence 346789999999999999999999999998642 2111 11 23444545568888888887777544
No 254
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=20.01 E-value=43 Score=34.46 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHhcCC-CCCcccHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHcCCCCCCcccHHHH
Q 002259 270 FDMVDKN-EDGRIAEEEVKEIIMLSASANKLSRLKEQAEEYAALIMEELDPEGLGYIELWQL 330 (946)
Q Consensus 270 F~~~D~d-gdG~Is~eE~~~~l~~~~~~~~l~~~~e~~~~~~~~if~e~D~d~dG~Is~eEF 330 (946)
|-.+|.. -||++|-.|+.-+-.-.+. .+......|+.-|.|+||+|.++|+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~ip----------me~c~~~f~e~cd~~nd~~ial~ew 244 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLIP----------MEHCTTRFFETCDLDNDKYIALDEW 244 (259)
T ss_pred eccccCCCccccccccccccccCCccc----------HHhhchhhhhcccCCCCCceeHHHh
Done!